Query 012929
Match_columns 453
No_of_seqs 441 out of 2296
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 1.8E-94 4E-99 692.2 36.7 440 1-451 1-453 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 7.1E-90 1.5E-94 697.1 42.3 382 58-448 2-410 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 2E-78 4.3E-83 627.9 45.7 383 57-447 5-414 (445)
4 PRK14327 (dimethylallyl)adenos 100.0 9.5E-78 2.1E-82 627.5 47.0 384 56-448 64-478 (509)
5 PRK14332 (dimethylallyl)adenos 100.0 1.7E-77 3.6E-82 621.2 46.4 380 58-446 10-416 (449)
6 PRK14329 (dimethylallyl)adenos 100.0 6.6E-77 1.4E-81 620.5 46.9 387 53-447 18-439 (467)
7 PRK14335 (dimethylallyl)adenos 100.0 6.1E-77 1.3E-81 619.4 45.4 385 59-448 1-424 (455)
8 PRK14330 (dimethylallyl)adenos 100.0 8.3E-77 1.8E-81 616.4 46.0 380 59-448 1-405 (434)
9 PRK14331 (dimethylallyl)adenos 100.0 8E-76 1.7E-80 609.2 45.1 381 59-448 1-409 (437)
10 PRK14326 (dimethylallyl)adenos 100.0 2.1E-75 4.7E-80 612.6 46.5 384 55-447 10-425 (502)
11 PRK14333 (dimethylallyl)adenos 100.0 1.4E-75 3E-80 608.8 44.7 380 59-448 7-421 (448)
12 PRK14337 (dimethylallyl)adenos 100.0 5.5E-75 1.2E-79 603.7 45.9 379 58-445 3-415 (446)
13 PRK14325 (dimethylallyl)adenos 100.0 1.2E-74 2.6E-79 602.1 45.6 383 58-448 3-414 (444)
14 PRK14336 (dimethylallyl)adenos 100.0 2.1E-74 4.5E-79 594.4 44.8 362 58-448 1-388 (418)
15 TIGR01578 MiaB-like-B MiaB-lik 100.0 1.9E-74 4.2E-79 595.7 44.0 378 60-447 1-394 (420)
16 PRK14328 (dimethylallyl)adenos 100.0 5E-74 1.1E-78 596.1 45.4 382 59-448 2-413 (439)
17 TIGR01574 miaB-methiolase tRNA 100.0 4.6E-74 1E-78 596.2 44.4 381 60-448 1-413 (438)
18 TIGR01579 MiaB-like-C MiaB-lik 100.0 5.7E-74 1.2E-78 592.5 43.6 375 63-448 1-401 (414)
19 TIGR00089 RNA modification enz 100.0 5.9E-74 1.3E-78 595.0 43.8 378 60-447 1-404 (429)
20 TIGR01125 MiaB-like tRNA modif 100.0 2E-73 4.4E-78 590.7 44.7 379 60-448 1-406 (430)
21 PRK14862 rimO ribosomal protei 100.0 4.8E-73 1E-77 587.8 43.0 372 58-447 7-413 (440)
22 PRK14338 (dimethylallyl)adenos 100.0 1.9E-72 4E-77 586.3 45.9 379 52-448 14-422 (459)
23 PRK14334 (dimethylallyl)adenos 100.0 2E-72 4.2E-77 584.0 45.4 378 59-448 1-402 (440)
24 PRK14339 (dimethylallyl)adenos 100.0 5.1E-72 1.1E-76 576.9 43.6 367 70-448 1-394 (420)
25 KOG2492 CDK5 activator-binding 100.0 1.4E-58 3E-63 447.7 29.4 380 58-446 72-508 (552)
26 TIGR02026 BchE magnesium-proto 100.0 1.8E-38 3.8E-43 334.6 33.3 306 71-393 21-384 (497)
27 TIGR03471 HpnJ hopanoid biosyn 100.0 5.5E-37 1.2E-41 322.1 29.8 280 94-394 67-385 (472)
28 PRK00955 hypothetical protein; 100.0 5.2E-36 1.1E-40 314.9 30.0 195 192-393 292-525 (620)
29 PRK01254 hypothetical protein; 100.0 1.1E-34 2.3E-39 302.5 25.7 196 192-393 372-607 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 1.3E-29 2.9E-34 248.8 23.5 202 190-404 51-259 (289)
31 COG1032 Fe-S oxidoreductase [E 100.0 2.5E-27 5.4E-32 249.3 27.4 289 95-393 72-402 (490)
32 PF00919 UPF0004: Uncharacteri 99.9 5E-27 1.1E-31 192.9 10.2 92 60-151 1-98 (98)
33 PRK07094 biotin synthase; Prov 99.9 1.1E-25 2.3E-30 225.6 20.5 186 192-393 39-226 (323)
34 TIGR00510 lipA lipoate synthas 99.9 2.9E-24 6.2E-29 211.1 23.5 191 190-393 61-255 (302)
35 PRK12928 lipoyl synthase; Prov 99.9 2.1E-24 4.6E-29 211.5 22.3 192 190-393 58-252 (290)
36 PRK08599 coproporphyrinogen II 99.9 3.2E-24 6.9E-29 219.3 19.2 190 193-393 3-198 (377)
37 PRK05904 coproporphyrinogen II 99.9 2.8E-24 6.1E-29 217.0 18.5 180 202-393 16-201 (353)
38 PRK09058 coproporphyrinogen II 99.9 2.6E-23 5.6E-28 216.7 20.7 192 192-394 62-262 (449)
39 PRK05628 coproporphyrinogen II 99.9 4.8E-23 1E-27 210.5 21.6 188 195-393 6-206 (375)
40 TIGR01212 radical SAM protein, 99.9 4.1E-23 8.9E-28 204.5 20.3 190 194-394 20-225 (302)
41 PRK05799 coproporphyrinogen II 99.9 2.8E-23 6E-28 212.3 19.5 188 194-393 6-197 (374)
42 PRK08446 coproporphyrinogen II 99.9 1.6E-23 3.4E-28 211.9 17.5 181 202-394 10-197 (350)
43 TIGR01210 conserved hypothetic 99.9 9E-23 1.9E-27 202.8 20.4 189 192-393 15-219 (313)
44 PRK07379 coproporphyrinogen II 99.9 6.5E-23 1.4E-27 210.8 19.4 182 202-393 20-213 (400)
45 PRK08207 coproporphyrinogen II 99.9 1.3E-22 2.8E-27 212.3 21.1 193 191-393 163-367 (488)
46 COG1031 Uncharacterized Fe-S o 99.9 1E-21 2.2E-26 194.7 26.2 200 191-393 182-412 (560)
47 PRK09057 coproporphyrinogen II 99.9 4E-22 8.8E-27 203.8 18.9 182 202-393 14-201 (380)
48 TIGR00539 hemN_rel putative ox 99.9 3.8E-22 8.3E-27 202.7 18.0 182 202-393 10-198 (360)
49 PRK08898 coproporphyrinogen II 99.9 9E-22 1.9E-26 202.1 18.7 182 202-393 29-219 (394)
50 PRK08208 coproporphyrinogen II 99.9 1.1E-21 2.5E-26 203.5 19.4 192 191-393 39-239 (430)
51 PRK06256 biotin synthase; Vali 99.9 1.3E-21 2.9E-26 197.1 18.7 179 199-393 65-247 (336)
52 PRK06294 coproporphyrinogen II 99.9 1E-21 2.2E-26 200.0 17.9 180 202-395 16-203 (370)
53 PRK06582 coproporphyrinogen II 99.9 3E-21 6.5E-26 197.5 19.0 182 202-393 21-208 (390)
54 PRK05660 HemN family oxidoredu 99.9 1E-20 2.2E-25 193.2 20.4 189 194-393 9-205 (378)
55 PLN02428 lipoic acid synthase 99.9 1.7E-20 3.7E-25 186.5 21.3 181 192-385 102-285 (349)
56 smart00729 Elp3 Elongator prot 99.9 1.5E-20 3.3E-25 174.9 19.7 191 193-393 2-198 (216)
57 TIGR00433 bioB biotin syntheta 99.9 1.5E-20 3.2E-25 186.1 20.6 185 193-393 29-218 (296)
58 PRK08629 coproporphyrinogen II 99.9 1.6E-20 3.4E-25 194.5 20.1 187 193-393 54-245 (433)
59 PRK06245 cofG FO synthase subu 99.9 6.5E-21 1.4E-25 192.0 16.4 189 193-393 13-218 (336)
60 TIGR00538 hemN oxygen-independ 99.9 4.3E-20 9.4E-25 193.2 21.4 186 194-390 52-246 (455)
61 PRK13347 coproporphyrinogen II 99.8 7.6E-20 1.7E-24 191.1 21.0 188 192-390 51-247 (453)
62 PRK09249 coproporphyrinogen II 99.8 6.8E-20 1.5E-24 191.5 19.4 185 195-390 53-246 (453)
63 TIGR01211 ELP3 histone acetylt 99.8 6.5E-19 1.4E-23 184.7 21.4 184 200-393 76-306 (522)
64 TIGR00423 radical SAM domain p 99.8 1.9E-19 4.2E-24 179.2 16.1 186 194-391 7-207 (309)
65 TIGR03551 F420_cofH 7,8-dideme 99.8 1.6E-19 3.4E-24 182.4 15.5 188 194-393 41-243 (343)
66 TIGR03550 F420_cofG 7,8-dideme 99.8 4E-19 8.8E-24 177.7 16.7 186 193-393 5-214 (322)
67 cd01335 Radical_SAM Radical SA 99.8 2.1E-18 4.6E-23 158.3 16.8 183 196-393 1-187 (204)
68 COG1242 Predicted Fe-S oxidore 99.8 1.1E-17 2.4E-22 157.3 21.1 188 195-393 27-229 (312)
69 PRK06267 hypothetical protein; 99.8 2.5E-18 5.4E-23 173.7 17.5 179 192-393 27-213 (350)
70 PRK08445 hypothetical protein; 99.8 1.4E-18 3E-23 175.1 14.9 188 195-393 45-246 (348)
71 COG0635 HemN Coproporphyrinoge 99.8 3.8E-18 8.3E-23 175.5 18.1 182 202-393 44-235 (416)
72 PF04055 Radical_SAM: Radical 99.8 4.4E-18 9.6E-23 151.8 15.1 162 196-371 1-166 (166)
73 PRK08508 biotin synthase; Prov 99.8 1.5E-17 3.2E-22 163.2 18.2 181 198-393 13-197 (279)
74 TIGR03700 mena_SCO4494 putativ 99.8 7.2E-18 1.6E-22 170.7 14.5 183 195-393 51-252 (351)
75 TIGR03699 mena_SCO4550 menaqui 99.8 6.4E-18 1.4E-22 170.6 13.1 187 195-393 44-245 (340)
76 PLN02389 biotin synthase 99.7 1.6E-16 3.4E-21 161.4 20.2 186 192-393 82-275 (379)
77 PRK09240 thiH thiamine biosynt 99.7 1.7E-15 3.6E-20 154.3 17.1 183 193-393 75-268 (371)
78 PRK15108 biotin synthase; Prov 99.6 9.3E-15 2E-19 147.3 19.6 184 193-393 43-233 (345)
79 COG1243 ELP3 Histone acetyltra 99.6 2.7E-14 5.8E-19 142.9 17.8 195 192-393 67-298 (515)
80 TIGR02351 thiH thiazole biosyn 99.6 2.9E-14 6.3E-19 145.1 16.3 183 193-393 74-267 (366)
81 PRK07360 FO synthase subunit 2 99.6 2.7E-14 5.9E-19 145.6 14.8 185 195-393 63-265 (371)
82 COG0502 BioB Biotin synthase a 99.6 6.9E-14 1.5E-18 137.7 16.2 185 192-393 50-240 (335)
83 PRK05926 hypothetical protein; 99.6 1.1E-13 2.5E-18 140.2 17.5 182 196-393 72-271 (370)
84 PRK00164 moaA molybdenum cofac 99.6 4.2E-13 9.2E-18 135.0 21.5 183 193-393 18-204 (331)
85 PRK08444 hypothetical protein; 99.5 1E-13 2.3E-18 139.7 15.2 184 195-393 52-253 (353)
86 TIGR03822 AblA_like_2 lysine-2 99.5 8.6E-13 1.9E-17 131.9 20.6 193 189-402 85-288 (321)
87 PRK09613 thiH thiamine biosynt 99.5 3.8E-13 8.2E-18 139.7 18.2 189 192-393 84-286 (469)
88 PRK13361 molybdenum cofactor b 99.5 1.6E-12 3.5E-17 130.6 21.6 180 193-390 15-197 (329)
89 TIGR02666 moaA molybdenum cofa 99.5 3.4E-12 7.3E-17 128.6 21.7 183 193-393 11-199 (334)
90 TIGR02668 moaA_archaeal probab 99.5 3.7E-12 8E-17 126.5 21.3 178 193-389 11-190 (302)
91 PTZ00413 lipoate synthase; Pro 99.5 3E-12 6.6E-17 127.2 20.0 181 192-385 149-333 (398)
92 PRK05927 hypothetical protein; 99.5 4.2E-13 9.1E-18 135.3 12.9 188 195-393 48-249 (350)
93 PRK09234 fbiC FO synthase; Rev 99.4 1.9E-12 4.2E-17 143.0 15.8 184 195-393 529-730 (843)
94 PLN02951 Molybderin biosynthes 99.4 5.5E-11 1.2E-15 121.3 23.1 183 193-393 59-245 (373)
95 PRK14463 ribosomal RNA large s 99.4 1.9E-10 4.2E-15 115.9 23.6 193 191-401 102-307 (349)
96 PRK09234 fbiC FO synthase; Rev 99.3 2.1E-11 4.5E-16 135.0 15.9 185 194-393 73-283 (843)
97 TIGR02493 PFLA pyruvate format 99.3 1.2E-10 2.6E-15 111.4 19.2 172 194-386 17-199 (235)
98 PRK14455 ribosomal RNA large s 99.3 2.6E-10 5.6E-15 115.4 22.1 188 191-393 108-308 (356)
99 PRK14466 ribosomal RNA large s 99.3 5.9E-10 1.3E-14 111.4 23.4 195 191-402 102-308 (345)
100 PRK14456 ribosomal RNA large s 99.3 8.4E-10 1.8E-14 111.8 22.4 197 191-402 120-336 (368)
101 TIGR00238 KamA family protein. 99.3 3E-10 6.6E-15 114.0 18.7 191 189-401 110-310 (331)
102 PRK05301 pyrroloquinoline quin 99.2 1.6E-09 3.5E-14 111.1 22.9 178 190-386 14-193 (378)
103 TIGR02495 NrdG2 anaerobic ribo 99.2 3E-09 6.5E-14 98.4 21.1 162 193-375 17-183 (191)
104 TIGR02109 PQQ_syn_pqqE coenzym 99.2 2.3E-09 5.1E-14 109.0 21.8 175 191-384 6-182 (358)
105 COG0320 LipA Lipoate synthase 99.2 1.1E-09 2.4E-14 103.5 16.6 181 191-385 69-251 (306)
106 PRK14457 ribosomal RNA large s 99.2 7.5E-09 1.6E-13 104.2 22.6 196 191-401 100-312 (345)
107 PRK14470 ribosomal RNA large s 99.1 1.1E-08 2.4E-13 102.5 23.4 184 191-389 96-288 (336)
108 PRK14459 ribosomal RNA large s 99.1 5.2E-09 1.1E-13 105.8 21.1 189 191-393 120-330 (373)
109 PRK14467 ribosomal RNA large s 99.1 6.8E-09 1.5E-13 104.5 21.7 194 191-401 98-311 (348)
110 TIGR01290 nifB nitrogenase cof 99.1 1.2E-08 2.5E-13 106.3 24.0 185 192-392 24-235 (442)
111 PRK14461 ribosomal RNA large s 99.1 1E-08 2.3E-13 102.8 22.4 195 191-401 106-334 (371)
112 PRK14453 chloramphenicol/florf 99.1 7.6E-09 1.7E-13 104.2 21.2 185 192-391 100-297 (347)
113 PRK11145 pflA pyruvate formate 99.1 2.5E-09 5.4E-14 103.1 16.3 178 193-391 21-209 (246)
114 PRK14460 ribosomal RNA large s 99.1 1.8E-08 3.8E-13 102.0 23.1 192 191-401 101-314 (354)
115 TIGR00048 radical SAM enzyme, 99.1 1.8E-08 4E-13 101.9 22.5 187 191-393 104-304 (355)
116 COG1060 ThiH Thiamine biosynth 99.1 1.4E-09 3E-14 110.0 13.9 188 194-393 61-265 (370)
117 PRK14468 ribosomal RNA large s 99.1 3.4E-08 7.4E-13 99.5 23.8 195 191-401 92-303 (343)
118 COG2896 MoaA Molybdenum cofact 99.1 1.1E-08 2.4E-13 100.8 19.5 179 194-393 13-197 (322)
119 PRK11194 ribosomal RNA large s 99.1 3.1E-08 6.8E-13 100.4 22.7 195 191-401 102-319 (372)
120 PRK14464 ribosomal RNA large s 99.1 1.1E-08 2.5E-13 102.3 19.2 192 193-402 97-300 (344)
121 TIGR03470 HpnH hopanoid biosyn 99.0 2.5E-08 5.3E-13 99.9 20.4 178 191-391 27-207 (318)
122 PRK14469 ribosomal RNA large s 99.0 3.2E-08 6.9E-13 100.0 20.2 184 191-389 100-293 (343)
123 TIGR03821 AblA_like_1 lysine-2 99.0 2.7E-08 5.9E-13 99.5 18.6 187 193-402 97-294 (321)
124 PRK14462 ribosomal RNA large s 99.0 1E-07 2.2E-12 96.1 22.7 195 191-401 109-320 (356)
125 TIGR03820 lys_2_3_AblA lysine- 99.0 4.1E-08 8.9E-13 100.4 20.0 191 189-402 105-306 (417)
126 COG1244 Predicted Fe-S oxidore 98.9 4.3E-08 9.4E-13 94.9 17.4 189 194-393 49-254 (358)
127 PRK14465 ribosomal RNA large s 98.9 1.4E-07 2.9E-12 94.7 21.7 192 192-401 105-311 (342)
128 COG0820 Predicted Fe-S-cluster 98.9 1.4E-07 3.1E-12 93.4 20.3 188 190-392 99-300 (349)
129 PRK14454 ribosomal RNA large s 98.9 2.5E-07 5.3E-12 93.3 21.8 196 191-401 100-308 (342)
130 COG1856 Uncharacterized homolo 98.9 9E-08 2E-12 88.0 15.1 181 197-393 16-197 (275)
131 KOG2672 Lipoate synthase [Coen 98.8 7.5E-08 1.6E-12 91.0 14.1 177 195-386 114-295 (360)
132 COG2100 Predicted Fe-S oxidore 98.7 5.1E-07 1.1E-11 87.4 16.9 194 195-404 110-325 (414)
133 COG0731 Fe-S oxidoreductases [ 98.7 9.8E-07 2.1E-11 86.0 18.3 173 201-393 33-220 (296)
134 PRK13762 tRNA-modifying enzyme 98.7 6.1E-07 1.3E-11 89.8 17.2 172 198-390 64-265 (322)
135 COG2516 Biotin synthase-relate 98.7 4.1E-07 8.8E-12 88.2 14.9 199 190-404 27-249 (339)
136 COG4277 Predicted DNA-binding 98.6 1.1E-06 2.4E-11 84.1 13.2 200 199-409 61-288 (404)
137 KOG2900 Biotin synthase [Coenz 98.5 1.5E-07 3.3E-12 87.8 6.4 176 199-393 91-276 (380)
138 COG1509 KamA Lysine 2,3-aminom 98.4 2.1E-05 4.5E-10 77.9 19.1 192 189-402 108-310 (369)
139 COG1533 SplB DNA repair photol 98.4 1.4E-05 3E-10 78.9 17.9 188 195-390 32-227 (297)
140 COG0535 Predicted Fe-S oxidore 98.4 2.6E-05 5.6E-10 78.4 20.4 179 191-387 18-198 (347)
141 TIGR03278 methan_mark_10 putat 98.3 5.7E-05 1.2E-09 77.7 18.7 165 204-385 37-206 (404)
142 TIGR03365 Bsubt_queE 7-cyano-7 98.3 4.2E-05 9E-10 73.5 16.4 146 195-375 26-176 (238)
143 PRK13745 anaerobic sulfatase-m 98.2 6E-05 1.3E-09 78.3 18.2 180 192-387 13-206 (412)
144 TIGR02494 PFLE_PFLC glycyl-rad 98.2 8.3E-05 1.8E-09 73.6 17.4 154 220-392 105-264 (295)
145 cd02068 radical_SAM_B12_BD B12 98.0 2.4E-05 5.3E-10 67.4 8.9 72 94-169 38-114 (127)
146 COG1180 PflA Pyruvate-formate 98.0 0.00022 4.8E-09 69.3 16.4 181 193-393 36-228 (260)
147 PRK13758 anaerobic sulfatase-m 98.0 0.0003 6.5E-09 71.9 18.1 174 195-383 8-193 (370)
148 PF02310 B12-binding: B12 bind 97.9 6.9E-05 1.5E-09 63.7 8.9 99 61-162 3-121 (121)
149 COG1625 Fe-S oxidoreductase, r 97.8 0.00025 5.5E-09 71.6 12.9 171 202-386 37-215 (414)
150 COG0641 AslB Arylsulfatase reg 97.8 0.00055 1.2E-08 69.9 15.3 174 202-391 18-199 (378)
151 KOG2535 RNA polymerase II elon 97.5 0.0023 4.9E-08 62.9 13.8 166 218-393 147-336 (554)
152 TIGR00640 acid_CoA_mut_C methy 97.5 0.0015 3.3E-08 56.8 11.2 102 59-164 3-122 (132)
153 PRK10076 pyruvate formate lyas 97.3 0.019 4E-07 54.2 16.5 149 219-386 17-169 (213)
154 COG1313 PflX Uncharacterized F 97.2 0.0073 1.6E-07 58.4 12.9 166 200-386 126-298 (335)
155 COG0602 NrdG Organic radical a 97.0 0.0011 2.3E-08 62.5 5.7 63 200-268 30-97 (212)
156 cd02065 B12-binding_like B12 b 96.9 0.0022 4.7E-08 54.6 5.8 82 76-163 17-116 (125)
157 TIGR02826 RNR_activ_nrdG3 anae 96.8 0.0025 5.5E-08 56.5 6.2 68 194-268 17-86 (147)
158 TIGR01501 MthylAspMutase methy 96.8 0.028 6.1E-07 48.9 12.4 103 60-164 3-130 (134)
159 cd02072 Glm_B12_BD B12 binding 96.8 0.0081 1.7E-07 51.8 9.0 86 75-164 16-125 (128)
160 COG5014 Predicted Fe-S oxidore 96.8 0.064 1.4E-06 48.1 14.4 140 199-357 48-197 (228)
161 cd02067 B12-binding B12 bindin 96.8 0.0066 1.4E-07 51.5 8.1 77 76-154 17-111 (119)
162 PRK02261 methylaspartate mutas 96.7 0.028 6.1E-07 49.2 11.6 105 59-165 4-133 (137)
163 PF13353 Fer4_12: 4Fe-4S singl 96.6 0.0072 1.6E-07 52.4 7.4 70 197-269 10-82 (139)
164 TIGR03279 cyano_FeS_chp putati 96.5 0.095 2.1E-06 54.2 15.9 67 305-374 139-206 (433)
165 COG2108 Uncharacterized conser 96.4 0.043 9.4E-07 53.9 11.9 162 195-383 31-200 (353)
166 PF01938 TRAM: TRAM domain; I 96.4 0.0073 1.6E-07 44.9 5.3 35 412-448 2-36 (61)
167 PF13394 Fer4_14: 4Fe-4S singl 96.3 0.009 1.9E-07 50.5 6.1 53 198-250 4-60 (119)
168 COG2185 Sbm Methylmalonyl-CoA 96.1 0.061 1.3E-06 47.0 10.0 103 58-164 12-132 (143)
169 cd03174 DRE_TIM_metallolyase D 95.8 0.67 1.5E-05 44.7 17.4 150 218-382 13-166 (265)
170 cd02071 MM_CoA_mut_B12_BD meth 95.7 0.15 3.2E-06 43.5 10.9 77 76-154 17-111 (122)
171 KOG2876 Molybdenum cofactor bi 95.1 0.048 1E-06 52.1 6.1 180 195-393 14-198 (323)
172 PRK09426 methylmalonyl-CoA mut 94.9 0.25 5.4E-06 54.8 11.8 103 58-164 582-702 (714)
173 TIGR02491 NrdG anaerobic ribon 94.9 0.098 2.1E-06 46.7 7.2 67 199-269 22-93 (154)
174 PLN02746 hydroxymethylglutaryl 94.0 2.5 5.3E-05 42.9 15.8 145 218-381 62-216 (347)
175 cd02070 corrinoid_protein_B12- 94.0 0.16 3.6E-06 47.3 7.0 73 75-150 99-189 (201)
176 KOG2492 CDK5 activator-binding 93.8 0.033 7.2E-07 56.1 2.0 51 50-109 386-437 (552)
177 PRK11121 nrdG anaerobic ribonu 93.3 0.42 9.1E-06 42.6 8.0 66 200-270 24-96 (154)
178 PRK05692 hydroxymethylglutaryl 92.6 4.6 0.0001 39.8 15.0 147 218-381 20-174 (287)
179 cd07948 DRE_TIM_HCS Saccharomy 92.6 5.5 0.00012 38.8 15.3 142 218-381 16-160 (262)
180 PRK14818 NADH dehydrogenase su 92.2 0.46 1E-05 42.8 6.6 75 59-138 31-112 (173)
181 PRK14816 NADH dehydrogenase su 92.1 0.4 8.8E-06 43.6 6.2 74 60-138 42-123 (182)
182 TIGR02370 pyl_corrinoid methyl 92.0 0.93 2E-05 42.1 8.9 85 59-147 85-188 (197)
183 cd07938 DRE_TIM_HMGL 3-hydroxy 91.5 6.5 0.00014 38.5 14.6 147 217-381 13-168 (274)
184 TIGR01957 nuoB_fam NADH-quinon 90.7 0.64 1.4E-05 41.0 5.9 73 60-137 18-98 (145)
185 cd07939 DRE_TIM_NifV Streptomy 90.6 9 0.00019 37.1 14.5 141 219-381 15-158 (259)
186 cd02069 methionine_synthase_B1 90.5 0.69 1.5E-05 43.6 6.4 76 59-136 89-180 (213)
187 PRK14813 NADH dehydrogenase su 89.4 0.29 6.3E-06 44.7 2.8 71 61-136 30-107 (189)
188 PF08821 CGGC: CGGC domain; I 88.2 1.5 3.3E-05 36.5 6.1 61 60-131 40-105 (107)
189 PRK06411 NADH dehydrogenase su 88.0 1.1 2.5E-05 40.9 5.6 75 60-137 36-115 (183)
190 TIGR03217 4OH_2_O_val_ald 4-hy 87.9 32 0.0007 34.7 16.7 139 219-381 19-162 (333)
191 PRK14819 NADH dehydrogenase su 87.5 1.5 3.3E-05 41.9 6.4 75 59-138 31-113 (264)
192 PRK11858 aksA trans-homoaconit 86.4 34 0.00073 35.1 16.1 142 219-382 21-165 (378)
193 PRK14815 NADH dehydrogenase su 85.8 2.1 4.6E-05 39.0 6.1 74 59-137 33-114 (183)
194 TIGR02660 nifV_homocitr homoci 84.8 23 0.0005 36.2 13.9 141 218-381 17-161 (365)
195 PF00682 HMGL-like: HMGL-like 84.7 6.1 0.00013 37.5 9.2 144 220-382 10-157 (237)
196 CHL00023 ndhK NADH dehydrogena 84.7 1.8 3.8E-05 40.7 5.1 75 60-137 33-112 (225)
197 cd07940 DRE_TIM_IPMS 2-isoprop 84.5 33 0.00072 33.2 14.4 143 219-381 15-162 (268)
198 COG3260 Ni,Fe-hydrogenase III 84.1 2.3 5.1E-05 36.7 5.2 65 62-136 23-89 (148)
199 TIGR02090 LEU1_arch isopropylm 83.8 34 0.00073 35.0 14.6 144 218-383 16-162 (363)
200 PRK00915 2-isopropylmalate syn 82.3 35 0.00075 36.6 14.5 147 218-381 20-168 (513)
201 PF04016 DUF364: Domain of unk 81.9 2 4.4E-05 37.9 4.3 55 94-152 61-116 (147)
202 cd07944 DRE_TIM_HOA_like 4-hyd 81.9 53 0.0011 31.9 18.1 140 219-381 15-157 (266)
203 PRK14814 NADH dehydrogenase su 80.9 3.1 6.8E-05 38.1 5.1 55 82-137 59-114 (186)
204 PRK07535 methyltetrahydrofolat 80.3 16 0.00034 35.6 10.2 144 217-374 18-183 (261)
205 cd07945 DRE_TIM_CMS Leptospira 79.8 53 0.0012 32.2 13.9 147 218-381 13-166 (280)
206 TIGR02082 metH 5-methyltetrahy 78.6 3.9 8.4E-05 48.1 6.2 76 59-136 733-824 (1178)
207 PRK09389 (R)-citramalate synth 78.3 63 0.0014 34.5 14.8 142 218-381 18-162 (488)
208 PRK14820 NADH dehydrogenase su 76.9 7.8 0.00017 35.4 6.4 66 65-137 41-114 (180)
209 PRK08195 4-hyroxy-2-oxovalerat 76.0 93 0.002 31.4 17.9 139 219-381 20-163 (337)
210 cd00423 Pterin_binding Pterin 75.9 6.7 0.00014 38.0 6.2 141 218-374 18-194 (258)
211 COG0685 MetF 5,10-methylenetet 75.7 47 0.001 32.8 12.2 118 219-356 87-210 (291)
212 cd07941 DRE_TIM_LeuA3 Desulfob 74.7 87 0.0019 30.5 16.0 148 219-380 15-169 (273)
213 cd07937 DRE_TIM_PC_TC_5S Pyruv 74.4 89 0.0019 30.5 16.5 145 219-382 16-169 (275)
214 PRK09490 metH B12-dependent me 73.6 6.3 0.00014 46.5 6.2 76 59-136 752-843 (1229)
215 COG3473 Maleate cis-trans isom 73.4 6.7 0.00015 36.6 5.1 32 58-92 118-149 (238)
216 TIGR00973 leuA_bact 2-isopropy 72.6 89 0.0019 33.4 14.1 146 218-381 17-165 (494)
217 PRK09432 metF 5,10-methylenete 71.8 66 0.0014 31.9 12.2 49 219-267 92-140 (296)
218 COG5561 Predicted metal-bindin 71.4 25 0.00053 28.2 7.1 64 59-132 29-97 (101)
219 PRK08091 ribulose-phosphate 3- 70.6 1E+02 0.0022 29.4 15.1 136 219-393 20-158 (228)
220 PRK13292 trifunctional NADH de 70.6 7.5 0.00016 43.7 5.7 75 59-138 22-104 (788)
221 cd02072 Glm_B12_BD B12 binding 70.1 33 0.00071 29.6 8.3 57 327-392 62-119 (128)
222 PRK14817 NADH dehydrogenase su 68.3 9 0.0002 35.0 4.7 73 60-137 36-116 (181)
223 cd00739 DHPS DHPS subgroup of 67.9 1.1E+02 0.0023 29.7 12.5 28 219-246 19-46 (257)
224 PRK12344 putative alpha-isopro 67.6 1.8E+02 0.004 31.3 15.3 150 218-380 21-176 (524)
225 cd07943 DRE_TIM_HOA 4-hydroxy- 66.1 1.3E+02 0.0028 29.0 18.0 139 219-381 17-160 (263)
226 COG5012 Predicted cobalamin bi 65.7 9.8 0.00021 35.9 4.5 53 72-126 118-184 (227)
227 TIGR00642 mmCoA_mut_beta methy 65.4 41 0.00089 36.9 9.9 101 58-161 494-612 (619)
228 TIGR02990 ectoine_eutA ectoine 65.3 27 0.00059 33.5 7.7 94 58-163 120-222 (239)
229 PF08902 DUF1848: Domain of un 64.9 1.3E+02 0.0027 29.5 12.1 100 220-324 55-166 (266)
230 COG2014 Uncharacterized conser 64.6 9.7 0.00021 35.6 4.2 58 94-155 163-221 (250)
231 TIGR01496 DHPS dihydropteroate 63.8 1.4E+02 0.0029 29.0 12.3 29 217-245 16-44 (257)
232 PF13552 DUF4127: Protein of u 63.1 23 0.0005 37.8 7.4 58 75-132 280-352 (497)
233 PRK14040 oxaloacetate decarbox 62.5 2.4E+02 0.0053 30.9 16.9 141 220-381 23-174 (593)
234 PRK00366 ispG 4-hydroxy-3-meth 62.1 1.6E+02 0.0035 29.9 12.5 137 219-374 37-199 (360)
235 PRK14041 oxaloacetate decarbox 59.2 2.4E+02 0.0053 29.9 17.8 142 219-381 20-172 (467)
236 TIGR01754 flav_RNR ribonucleot 58.6 32 0.00069 29.7 6.4 61 75-135 18-91 (140)
237 COG2875 CobM Precorrin-4 methy 58.6 1.1E+02 0.0025 29.2 10.1 127 218-356 56-229 (254)
238 COG1618 Predicted nucleotide k 58.5 1E+02 0.0022 28.0 9.3 75 94-168 99-177 (179)
239 COG1679 Predicted aconitase [G 58.5 18 0.0004 36.6 5.2 70 60-136 289-359 (403)
240 PRK09271 flavodoxin; Provision 57.1 35 0.00077 30.2 6.5 60 75-134 18-94 (160)
241 COG1941 FrhG Coenzyme F420-red 55.5 26 0.00056 33.4 5.4 68 66-137 15-90 (247)
242 KOG3799 Rab3 effector RIM1 and 55.4 4.6 0.0001 34.7 0.4 17 197-213 75-91 (169)
243 PF03698 UPF0180: Uncharacteri 54.0 13 0.00028 29.3 2.7 25 77-101 12-41 (80)
244 TIGR01501 MthylAspMutase methy 53.6 82 0.0018 27.4 7.9 59 326-393 63-122 (134)
245 PRK09282 pyruvate carboxylase 52.4 3.5E+02 0.0076 29.6 16.4 142 220-381 22-173 (592)
246 PF00834 Ribul_P_3_epim: Ribul 51.6 1.8E+02 0.0038 27.1 10.4 131 220-390 8-140 (201)
247 PRK15452 putative protease; Pr 50.5 94 0.002 32.7 9.3 75 303-383 22-97 (443)
248 cd03315 MLE_like Muconate lact 50.3 2.4E+02 0.0051 27.1 11.9 93 222-325 85-177 (265)
249 PF10649 DUF2478: Protein of u 50.3 32 0.0007 30.8 5.0 62 63-130 67-128 (159)
250 TIGR00612 ispG_gcpE 1-hydroxy- 49.6 2.9E+02 0.0064 27.9 13.1 141 219-374 29-190 (346)
251 PF05818 TraT: Enterobacterial 49.6 33 0.00071 32.3 5.1 49 50-100 13-64 (215)
252 cd01301 rDP_like renal dipepti 49.0 2.7E+02 0.0059 27.7 11.9 134 227-382 116-262 (309)
253 TIGR03127 RuMP_HxlB 6-phospho 48.1 96 0.0021 27.7 8.0 72 59-135 31-110 (179)
254 KOG2368 Hydroxymethylglutaryl- 47.5 66 0.0014 30.5 6.7 64 191-271 149-212 (316)
255 TIGR00676 fadh2 5,10-methylene 45.8 2.1E+02 0.0045 27.8 10.4 115 219-357 68-193 (272)
256 cd03409 Chelatase_Class_II Cla 45.3 1.1E+02 0.0023 24.3 7.1 61 329-393 16-76 (101)
257 cd00537 MTHFR Methylenetetrahy 45.2 2.4E+02 0.0053 27.2 10.9 120 219-359 68-198 (274)
258 COG1964 Predicted Fe-S oxidore 44.8 4E+02 0.0086 28.1 13.4 146 209-374 78-228 (475)
259 cd04731 HisF The cyclase subun 44.6 2.8E+02 0.006 26.2 12.4 137 223-386 26-173 (243)
260 PLN02746 hydroxymethylglutaryl 44.1 3.6E+02 0.0078 27.4 13.5 63 192-271 178-240 (347)
261 cd05014 SIS_Kpsf KpsF-like pro 43.9 1.1E+02 0.0023 25.5 7.2 65 63-130 3-79 (128)
262 PF01261 AP_endonuc_2: Xylose 43.7 2.4E+02 0.0052 25.2 11.9 72 304-384 8-93 (213)
263 PLN02321 2-isopropylmalate syn 43.5 4.9E+02 0.011 28.8 14.2 145 218-381 102-259 (632)
264 PLN03228 methylthioalkylmalate 43.5 4.5E+02 0.0097 28.2 14.3 149 218-381 100-258 (503)
265 TIGR00696 wecB_tagA_cpsF bacte 43.3 1.4E+02 0.0031 27.1 8.2 52 328-383 57-108 (177)
266 PF06283 ThuA: Trehalose utili 42.7 53 0.0011 30.6 5.6 55 74-129 20-85 (217)
267 COG0826 Collagenase and relate 42.5 1.4E+02 0.003 30.4 8.8 74 305-383 27-100 (347)
268 COG0119 LeuA Isopropylmalate/h 42.3 4.2E+02 0.0091 27.6 13.4 144 218-381 18-165 (409)
269 PF08392 FAE1_CUT1_RppA: FAE1/ 42.3 32 0.00069 33.9 4.0 57 78-139 91-151 (290)
270 PLN02540 methylenetetrahydrofo 41.7 2.4E+02 0.0051 30.7 10.7 51 219-269 68-124 (565)
271 COG1625 Fe-S oxidoreductase, r 41.4 1.9E+02 0.0041 30.0 9.4 145 202-361 85-261 (414)
272 PF06180 CbiK: Cobalt chelatas 41.3 2.2E+02 0.0048 27.7 9.6 149 222-393 56-214 (262)
273 COG1152 CdhA CO dehydrogenase/ 41.2 44 0.00095 36.0 5.0 57 82-139 487-543 (772)
274 PRK12330 oxaloacetate decarbox 41.0 4.8E+02 0.01 28.0 15.7 143 220-381 23-174 (499)
275 cd04723 HisA_HisF Phosphoribos 40.5 2.1E+02 0.0046 27.0 9.4 132 224-385 35-168 (233)
276 TIGR03278 methan_mark_10 putat 40.3 15 0.00033 38.1 1.5 17 199-215 6-22 (404)
277 cd05013 SIS_RpiR RpiR-like pro 40.1 1.6E+02 0.0034 24.4 7.8 70 59-133 14-96 (139)
278 PF04412 DUF521: Protein of un 40.1 44 0.00095 34.6 4.8 73 56-137 285-360 (400)
279 PRK02261 methylaspartate mutas 40.1 1.2E+02 0.0026 26.3 6.9 57 327-393 66-124 (137)
280 TIGR01227 hutG formimidoylglut 39.5 3.9E+02 0.0084 26.4 13.4 157 223-389 97-289 (307)
281 PRK11104 hemG protoporphyrinog 39.3 1.3E+02 0.0028 27.2 7.3 63 71-134 13-87 (177)
282 cd01836 FeeA_FeeB_like SGNH_hy 38.9 1.2E+02 0.0026 27.0 7.2 67 60-134 40-115 (191)
283 PF04481 DUF561: Protein of un 38.8 3.5E+02 0.0076 25.7 13.4 130 219-381 22-151 (242)
284 COG3925 N-terminal domain of t 38.8 47 0.001 26.9 3.7 47 76-133 21-67 (103)
285 TIGR03572 WbuZ glycosyl amidat 38.6 3.3E+02 0.0073 25.4 12.6 135 225-386 31-177 (232)
286 PRK10812 putative DNAse; Provi 38.5 1.6E+02 0.0034 28.6 8.3 132 222-384 21-157 (265)
287 PLN02495 oxidoreductase, actin 38.3 1.1E+02 0.0025 31.5 7.5 58 327-387 95-152 (385)
288 PRK11613 folP dihydropteroate 37.6 4.1E+02 0.0089 26.1 14.8 139 218-374 32-207 (282)
289 COG1410 MetH Methionine syntha 37.4 30 0.00066 38.3 3.3 71 59-136 408-498 (842)
290 COG2355 Zn-dependent dipeptida 37.4 4.4E+02 0.0095 26.4 11.7 139 221-381 105-258 (313)
291 PF03808 Glyco_tran_WecB: Glyc 35.9 1.5E+02 0.0032 26.7 7.1 53 328-383 57-109 (172)
292 TIGR01108 oadA oxaloacetate de 35.6 6.3E+02 0.014 27.7 17.8 142 220-381 17-168 (582)
293 PRK07308 flavodoxin; Validated 35.2 2.6E+02 0.0056 24.0 8.5 77 58-134 1-91 (146)
294 cd00452 KDPG_aldolase KDPG and 35.0 3.5E+02 0.0075 24.5 14.1 120 218-387 10-129 (190)
295 PRK05568 flavodoxin; Provision 34.8 1.1E+02 0.0025 26.0 6.0 62 76-137 20-94 (142)
296 PRK06703 flavodoxin; Provision 34.3 1E+02 0.0022 26.8 5.7 62 76-137 20-94 (151)
297 TIGR03217 4OH_2_O_val_ald 4-hy 34.2 1.7E+02 0.0036 29.5 7.9 48 220-271 139-186 (333)
298 COG0821 gcpE 1-hydroxy-2-methy 34.1 5.1E+02 0.011 26.2 13.2 136 219-374 31-192 (361)
299 PRK08195 4-hyroxy-2-oxovalerat 33.9 1.8E+02 0.0039 29.4 8.1 55 221-281 141-195 (337)
300 PRK08883 ribulose-phosphate 3- 33.8 2.7E+02 0.0058 26.3 8.8 135 220-393 8-144 (220)
301 cd00635 PLPDE_III_YBL036c_like 33.6 2.2E+02 0.0048 26.5 8.3 63 306-374 117-184 (222)
302 PF03016 Exostosin: Exostosin 33.4 51 0.0011 32.0 4.0 34 68-102 32-66 (302)
303 PRK06242 flavodoxin; Provision 33.0 54 0.0012 28.3 3.7 46 93-138 41-87 (150)
304 TIGR00695 uxuA mannonate dehyd 32.8 1.1E+02 0.0024 31.7 6.3 133 220-358 39-183 (394)
305 PRK13585 1-(5-phosphoribosyl)- 32.7 4.2E+02 0.0091 24.8 12.2 134 225-385 33-172 (241)
306 PRK09856 fructoselysine 3-epim 32.7 4.4E+02 0.0096 25.1 12.2 44 330-375 129-172 (275)
307 cd05005 SIS_PHI Hexulose-6-pho 32.6 2.3E+02 0.005 25.3 8.0 75 59-138 34-116 (179)
308 PRK13146 hisH imidazole glycer 32.3 2.1E+02 0.0046 26.5 7.8 42 58-103 1-49 (209)
309 PRK03501 ppnK inorganic polyph 32.2 2.2E+02 0.0047 27.7 8.0 60 58-123 2-61 (264)
310 cd01822 Lysophospholipase_L1_l 31.9 2.5E+02 0.0055 24.4 8.0 66 60-133 36-109 (177)
311 cd03063 TRX_Fd_FDH_beta TRX-li 31.7 1.3E+02 0.0028 24.3 5.4 68 99-167 5-79 (92)
312 PF04551 GcpE: GcpE protein; 31.7 2.2E+02 0.0047 29.0 8.0 134 219-373 26-198 (359)
313 cd03412 CbiK_N Anaerobic cobal 31.5 1.9E+02 0.0042 24.6 6.8 62 330-391 17-85 (127)
314 COG1832 Predicted CoA-binding 31.5 1.7E+02 0.0038 25.5 6.3 68 59-134 17-106 (140)
315 PRK09282 pyruvate carboxylase 30.7 5.8E+02 0.013 28.0 11.8 123 221-374 151-273 (592)
316 PRK06756 flavodoxin; Provision 30.6 3.5E+02 0.0075 23.2 8.9 79 58-136 1-94 (148)
317 TIGR00284 dihydropteroate synt 30.5 4.8E+02 0.01 28.0 10.9 125 224-372 165-304 (499)
318 cd06556 ICL_KPHMT Members of t 30.4 1.6E+02 0.0034 28.3 6.6 54 327-381 55-108 (240)
319 PRK05474 xylose isomerase; Pro 29.8 3.9E+02 0.0085 28.0 9.6 153 233-389 88-268 (437)
320 PRK10494 hypothetical protein; 29.6 1.3E+02 0.0029 29.1 6.1 60 74-134 58-130 (259)
321 COG0159 TrpA Tryptophan syntha 29.5 5.4E+02 0.012 25.1 12.3 27 319-345 68-94 (265)
322 PF00296 Bac_luciferase: Lucif 29.4 5.3E+02 0.011 24.9 13.1 110 222-343 21-140 (307)
323 PF13714 PEP_mutase: Phosphoen 29.2 1.5E+02 0.0032 28.4 6.2 65 327-393 52-117 (238)
324 cd04795 SIS SIS domain. SIS (S 28.2 2.6E+02 0.0057 21.0 6.7 33 94-129 46-78 (87)
325 PRK12331 oxaloacetate decarbox 28.1 6.7E+02 0.014 26.4 11.4 102 221-342 151-252 (448)
326 PRK11557 putative DNA-binding 28.1 2.4E+02 0.0052 27.1 7.7 71 59-134 129-212 (278)
327 PRK13774 formimidoylglutamase; 28.0 6.1E+02 0.013 25.2 11.3 157 223-389 106-293 (311)
328 COG0036 Rpe Pentose-5-phosphat 27.9 5.3E+02 0.011 24.4 11.4 117 225-356 72-203 (220)
329 PRK00923 sirohydrochlorin coba 27.6 3E+02 0.0065 23.0 7.4 59 329-392 17-76 (126)
330 PRK13731 conjugal transfer sur 27.5 53 0.0012 31.4 2.8 43 58-101 50-95 (243)
331 cd06533 Glyco_transf_WecG_TagA 27.1 2.1E+02 0.0045 25.7 6.6 53 328-383 55-107 (171)
332 PRK12331 oxaloacetate decarbox 26.8 7.7E+02 0.017 26.0 18.0 142 220-381 22-173 (448)
333 PLN02932 3-ketoacyl-CoA syntha 26.7 77 0.0017 33.7 4.1 56 79-139 157-216 (478)
334 TIGR01753 flav_short flavodoxi 26.6 1.8E+02 0.0038 24.4 5.8 62 76-137 17-92 (140)
335 PRK13143 hisH imidazole glycer 26.5 2.7E+02 0.0059 25.5 7.4 71 59-134 1-79 (200)
336 PRK12330 oxaloacetate decarbox 26.4 8.3E+02 0.018 26.2 14.4 85 221-315 152-236 (499)
337 cd07942 DRE_TIM_LeuA Mycobacte 26.3 6.3E+02 0.014 24.8 15.6 141 218-374 17-168 (284)
338 cd01744 GATase1_CPSase Small c 26.2 1.7E+02 0.0036 26.3 5.8 23 61-89 1-23 (178)
339 PRK09529 bifunctional acetyl-C 26.2 1.8E+02 0.004 32.1 6.8 57 80-140 121-177 (711)
340 TIGR00977 LeuA_rel 2-isopropyl 26.0 8.5E+02 0.019 26.2 16.8 151 218-382 17-174 (526)
341 PF00490 ALAD: Delta-aminolevu 26.0 1.8E+02 0.0038 29.2 6.1 58 213-271 47-111 (324)
342 cd03142 GATase1_ThuA Type 1 gl 25.9 1.9E+02 0.0041 27.3 6.2 32 75-106 25-69 (215)
343 TIGR00334 5S_RNA_mat_M5 ribonu 25.8 4.1E+02 0.0089 24.2 8.0 25 223-249 34-59 (174)
344 cd05006 SIS_GmhA Phosphoheptos 25.6 2.9E+02 0.0062 24.6 7.3 38 94-134 100-138 (177)
345 PRK03767 NAD(P)H:quinone oxido 25.5 2.5E+02 0.0055 25.7 7.0 28 94-121 68-95 (200)
346 COG0648 Nfo Endonuclease IV [D 25.4 6.2E+02 0.013 24.9 9.8 129 218-386 81-215 (280)
347 TIGR00393 kpsF KpsF/GutQ famil 25.3 3.2E+02 0.0068 26.0 8.0 68 64-134 4-84 (268)
348 PRK14024 phosphoribosyl isomer 25.2 5.9E+02 0.013 24.1 13.2 131 225-385 33-169 (241)
349 PRK02271 methylenetetrahydrome 25.1 6.8E+02 0.015 24.8 12.2 105 222-343 12-125 (325)
350 PRK00694 4-hydroxy-3-methylbut 25.0 9.3E+02 0.02 26.3 11.7 71 294-373 149-225 (606)
351 PF00682 HMGL-like: HMGL-like 24.8 4.4E+02 0.0095 24.6 8.7 55 220-281 133-187 (237)
352 PRK14057 epimerase; Provisiona 24.8 6.5E+02 0.014 24.4 15.6 136 219-393 27-172 (254)
353 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.6 3.1E+02 0.0066 22.5 6.9 66 65-133 4-82 (126)
354 PF05226 CHASE2: CHASE2 domain 24.4 2.4E+02 0.0052 27.6 7.0 59 315-375 48-109 (310)
355 PF13590 DUF4136: Domain of un 24.3 79 0.0017 27.2 3.2 42 58-101 17-65 (151)
356 cd03321 mandelate_racemase Man 24.0 5.6E+02 0.012 25.8 9.8 136 222-377 141-290 (355)
357 TIGR03294 FrhG coenzyme F420 h 24.0 68 0.0015 30.5 2.9 40 94-135 49-89 (228)
358 TIGR03168 1-PFK hexose kinase, 24.0 3.9E+02 0.0084 25.8 8.4 66 59-131 98-163 (303)
359 PRK11543 gutQ D-arabinose 5-ph 24.0 3.3E+02 0.0071 26.8 8.0 71 59-134 43-126 (321)
360 cd00950 DHDPS Dihydrodipicolin 23.9 4.8E+02 0.01 25.2 9.0 51 328-381 51-101 (284)
361 PRK03094 hypothetical protein; 23.9 61 0.0013 25.5 2.0 24 78-101 13-41 (80)
362 PRK11337 DNA-binding transcrip 23.7 2.5E+02 0.0055 27.2 7.0 73 59-136 141-226 (292)
363 PRK10892 D-arabinose 5-phospha 23.7 3.6E+02 0.0078 26.6 8.2 72 59-135 48-132 (326)
364 TIGR00288 conserved hypothetic 23.6 2.6E+02 0.0056 25.1 6.3 53 75-133 68-137 (160)
365 cd04823 ALAD_PBGS_aspartate_ri 23.4 3.4E+02 0.0074 27.1 7.6 59 212-271 43-108 (320)
366 PF03851 UvdE: UV-endonuclease 23.1 3.2E+02 0.007 26.8 7.4 62 221-287 42-109 (275)
367 TIGR00035 asp_race aspartate r 23.0 53 0.0012 31.0 2.0 72 58-134 117-196 (229)
368 PF00809 Pterin_bind: Pterin b 23.0 2.8E+02 0.0061 25.8 6.8 65 219-286 14-83 (210)
369 cd04506 SGNH_hydrolase_YpmR_li 22.9 3.4E+02 0.0074 24.4 7.4 71 59-134 36-130 (204)
370 PF01261 AP_endonuc_2: Xylose 22.9 3.6E+02 0.0078 24.0 7.5 51 329-381 111-161 (213)
371 PF06906 DUF1272: Protein of u 22.7 24 0.00051 25.7 -0.4 10 202-211 25-34 (57)
372 PRK05569 flavodoxin; Provision 22.6 2E+02 0.0042 24.5 5.3 62 76-137 20-95 (141)
373 COG0377 NuoB NADH:ubiquinone o 22.5 1.3E+02 0.0027 27.6 4.0 54 82-138 62-117 (194)
374 cd00384 ALAD_PBGS Porphobilino 22.4 4E+02 0.0086 26.6 7.8 56 212-271 40-103 (314)
375 PRK04296 thymidine kinase; Pro 22.3 2.4E+02 0.0052 25.6 6.1 44 93-138 76-119 (190)
376 KOG1687 NADH-ubiquinone oxidor 22.3 99 0.0021 26.8 3.2 75 59-135 32-110 (168)
377 PF10087 DUF2325: Uncharacteri 22.3 3.1E+02 0.0068 21.8 6.2 35 94-131 47-81 (97)
378 TIGR00695 uxuA mannonate dehyd 22.2 1.7E+02 0.0036 30.3 5.4 50 326-377 39-98 (394)
379 PF02110 HK: Hydroxyethylthiaz 22.1 2.7E+02 0.0059 26.8 6.5 70 70-139 15-95 (246)
380 PF04495 GRASP55_65: GRASP55/6 22.1 36 0.00077 29.7 0.5 41 345-385 60-100 (138)
381 cd06167 LabA_like LabA_like pr 22.0 2E+02 0.0043 24.6 5.3 63 67-141 77-139 (149)
382 cd03328 MR_like_3 Mandelate ra 22.0 7.7E+02 0.017 24.8 10.3 94 221-326 137-231 (352)
383 PRK03170 dihydrodipicolinate s 21.7 5.5E+02 0.012 25.0 8.9 14 329-342 82-95 (292)
384 cd04824 eu_ALAD_PBGS_cysteine_ 21.6 4.2E+02 0.0092 26.5 7.8 59 212-271 40-106 (320)
385 COG1121 ZnuC ABC-type Mn/Zn tr 21.5 2.5E+02 0.0053 27.3 6.1 61 70-130 112-194 (254)
386 PRK14041 oxaloacetate decarbox 21.5 4.7E+02 0.01 27.8 8.8 46 221-270 150-195 (467)
387 PF09370 TIM-br_sig_trns: TIM- 21.4 2.5E+02 0.0055 27.4 6.1 82 62-159 150-253 (268)
388 PF01207 Dus: Dihydrouridine s 21.2 8E+02 0.017 24.2 10.1 84 303-388 78-164 (309)
389 cd01164 FruK_PfkB_like 1-phosp 21.1 4.6E+02 0.0099 25.1 8.2 64 60-130 100-163 (289)
390 PRK07116 flavodoxin; Provision 21.1 5.6E+02 0.012 22.4 9.8 41 94-134 75-115 (160)
391 PF05853 DUF849: Prokaryotic p 21.1 7.7E+02 0.017 23.9 10.4 52 218-271 20-74 (272)
392 PRK09267 flavodoxin FldA; Vali 21.0 5E+02 0.011 22.8 7.9 40 95-134 46-89 (169)
393 PF02784 Orn_Arg_deC_N: Pyrido 20.9 4.4E+02 0.0095 24.9 7.9 134 227-382 51-203 (251)
394 cd07944 DRE_TIM_HOA_like 4-hyd 20.8 7.6E+02 0.017 23.8 11.5 46 221-270 135-180 (266)
395 PF04028 DUF374: Domain of unk 20.8 2.8E+02 0.0061 21.4 5.2 47 72-131 19-65 (74)
396 cd03416 CbiX_SirB_N Sirohydroc 20.8 4.3E+02 0.0093 20.9 7.5 61 329-393 15-75 (101)
397 PLN02615 arginase 20.8 8.7E+02 0.019 24.5 13.9 155 223-389 132-315 (338)
398 TIGR00007 phosphoribosylformim 20.8 6.8E+02 0.015 23.2 13.0 135 225-386 29-169 (230)
399 PF01058 Oxidored_q6: NADH ubi 20.7 16 0.00034 31.5 -2.0 42 94-137 44-86 (131)
400 TIGR00441 gmhA phosphoheptose 20.6 2.3E+02 0.0049 24.8 5.4 37 94-133 78-115 (154)
401 PRK13384 delta-aminolevulinic 20.5 4.5E+02 0.0097 26.4 7.7 56 212-271 50-113 (322)
402 cd06808 PLPDE_III Type III Pyr 20.5 6.3E+02 0.014 22.7 13.4 46 307-358 108-155 (211)
403 cd07945 DRE_TIM_CMS Leptospira 20.4 7.6E+02 0.016 24.1 9.5 46 222-271 145-190 (280)
404 cd03413 CbiK_C Anaerobic cobal 20.4 4.6E+02 0.01 21.4 6.8 59 329-393 15-73 (103)
405 PRK13111 trpA tryptophan synth 20.3 7.8E+02 0.017 23.7 10.7 38 361-404 128-165 (258)
406 cd03414 CbiX_SirB_C Sirohydroc 20.3 4.5E+02 0.0096 21.4 6.9 59 329-391 16-74 (117)
407 COG4252 Predicted transmembran 20.2 3E+02 0.0065 28.6 6.8 44 314-359 66-111 (400)
408 PRK12581 oxaloacetate decarbox 20.2 1.1E+03 0.023 25.2 14.8 142 221-381 32-182 (468)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-94 Score=692.21 Aligned_cols=440 Identities=61% Similarity=0.991 Sum_probs=413.4
Q ss_pred CCchhHHhhcCCCCCCCCCCCCCCCCcccccccCCCCC-CccCCcccccCCCCCCCCCCceEEEEeeCCCcChhHHHHHH
Q 012929 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKP-RLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMA 79 (453)
Q Consensus 1 ~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~t~GC~~N~~dse~~~ 79 (453)
|||||||+++ +|++|++|++.++ .|+||.||+.. +..+.+..+. ..+|.|||++||||+||||++|++|||+|+
T Consensus 1 ~ddiedl~s~---~d~kp~~r~~~~k-~v~pk~~kr~~~k~~q~ee~~~-ps~s~ipgtqki~iktwgcshnnsdseyma 75 (547)
T KOG4355|consen 1 MDDIEDLLSG---GDAKPGFRLPLNK-VVNPKTNKRISSKPDQIEESNR-PSSSKIPGTQKIYIKTWGCSHNNSDSEYMA 75 (547)
T ss_pred CccHHHHhhC---CCCCCcccccccc-ccccccccccccCchhhhhcCC-CccccCCCccEEEEEeecccCCCchhHHHh
Confidence 7999999976 7999999998555 59999988643 2222333233 448999999999999999999999999999
Q ss_pred HHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhhhcCCccEEEcCCChhHHH
Q 012929 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159 (453)
Q Consensus 80 ~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvG~~~~~~l~ 159 (453)
++|.+.||.++. +++||+|++|||||.++++..++..|.+.++.++++|++||.+|..|++..+.+.+|+|.+++++++
T Consensus 76 gqlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvv 154 (547)
T KOG4355|consen 76 GQLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVV 154 (547)
T ss_pred hhHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHH
Confidence 999999999998 9999999999999999999999999999998889999999999999998899999999999999999
Q ss_pred HHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCc
Q 012929 160 EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239 (453)
Q Consensus 160 ~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~ 239 (453)
|++++.++|+.++++.....+++++|+.|+++...+|.|+.||.+.|+||..++++|..-++|++++++.++...+.|+.
T Consensus 155 evveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~ 234 (547)
T KOG4355|consen 155 EVVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVC 234 (547)
T ss_pred HHHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcE
Confidence 99999999999999887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHH
Q 012929 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319 (453)
Q Consensus 240 eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~v 319 (453)
+||+++.|+++||+|++.+++.||+++.+.+| ..+.+|+++++|..+.+++.+++..++++.++.++|+|+|||||.+
T Consensus 235 eIwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsv 312 (547)
T KOG4355|consen 235 EIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSV 312 (547)
T ss_pred EEEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhH
Confidence 99999999999999999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH------
Q 012929 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL------ 393 (453)
Q Consensus 320 Lk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~------ 393 (453)
|..|+|.|...++..+++.+++.+|||.+.+|+|+||||||+|||++|++++++++|..+++++|+|+||||++
T Consensus 313 l~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 313 LTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHHHH--HHhhhhhcccCCeEEEEEEeeeeCCCCeeEEecCCCeEEEEcCCCCC
Q 012929 394 ----NLDSTELLSLL--FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDES 451 (453)
Q Consensus 394 ----~~R~~~l~~~~--~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~~~~y~~v~~~~~~~~ 451 (453)
++|.+.|.+++ +..|. .++ |+.++|||++.+.|+-+++|||+.|.+|+++.++.+
T Consensus 393 a~~vkkRTk~ls~lF~sy~pYt--d~i-ge~~rVlVTEva~Dklh~VgHnksYeQVLvp~~~~~ 453 (547)
T KOG4355|consen 393 AVEVKKRTKALSELFRSYTPYT--DEI-GELHRVLVTEVAADKLHYVGHNKSYEQVLVPLEYCK 453 (547)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc--ccc-ccEEEEEEEEeeccceeeeccccceeEEEeecchhh
Confidence 89999999999 88888 887 999999999998887799999999999999887643
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-90 Score=697.11 Aligned_cols=382 Identities=33% Similarity=0.572 Sum_probs=339.8
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCC-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~-~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~ 134 (453)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||++|||||+|++.|++++++.|+++++.+ .+|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 689999999999999999999999999999 69999999999999999999999999999999988765 579999999
Q ss_pred cCCchh-hhcCC-ccEEEcCCChhHHHHHHHHHhcCCcee--eccccCCCC-CCCccccccceEEEEEeCCCCCCCcccc
Q 012929 135 PQGSRD-LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYC 209 (453)
Q Consensus 135 a~~~~e-~~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~--~~~~~~~~~-~~~p~~~~~~~~~~i~isrGC~~~CsFC 209 (453)
||..++ ++.++ .|.|+|++++++++++|++...+.... .....+... ..+|..+....+|+|+|+.||+++||||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfC 161 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFC 161 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCee
Confidence 999966 45666 467999999999999999886553322 111100111 1223235668899999999999999999
Q ss_pred ccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEEEecCCc
Q 012929 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (453)
Q Consensus 210 ~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~ 286 (453)
++|++||+.||||+++|++|++.|+++|++||+|+|||+++||.|.+ .+|.+||+++.+ ++ |+.|+|++|++|.
T Consensus 162 iiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~P~ 238 (437)
T COG0621 162 IIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSHPL 238 (437)
T ss_pred eeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCCch
Confidence 99999999999999999999999999999999999999999999975 789999999987 77 8999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHH
Q 012929 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (453)
Q Consensus 287 ~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~ 366 (453)
.+++++ +..++..+++|+|||||+|||||++||+|+|+||.+++++.++++|+.+|++.++|||||||||||+|||++
T Consensus 239 ~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~ 316 (437)
T COG0621 239 EFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEE 316 (437)
T ss_pred hcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHH
Confidence 999887 666666689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeee-CCC
Q 012929 367 TVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLD-DQR 430 (453)
Q Consensus 367 tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~-~~~ 430 (453)
|++|+++++|+++|+|+|||+||||++ ++|+++|++++ .+.+. +++ |++++||||+.. +++
T Consensus 317 tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~--~~v-G~~~~VLVe~~~~~~~ 393 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQ--KLV-GKTLEVLVEEGGSKKG 393 (437)
T ss_pred HHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEEEEeccCcCC
Confidence 999999999999999999999999999 89999999999 33344 777 999999999632 333
Q ss_pred CeeEEecCCCeEEEEcCC
Q 012929 431 NVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 431 ~~~~g~~~~y~~v~~~~~ 448 (453)
.+.|||++|.+|.+...
T Consensus 394 -~~~Grt~~~~~v~~~~~ 410 (437)
T COG0621 394 -ELIGRTENYRPVVFGGV 410 (437)
T ss_pred -ceEEEcCCCCEEEecCc
Confidence 68999999999999764
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2e-78 Score=627.93 Aligned_cols=383 Identities=26% Similarity=0.450 Sum_probs=326.4
Q ss_pred CCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHH---HhhCCC--CEEEE
Q 012929 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSAKK--PLVVA 131 (453)
Q Consensus 57 ~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~---~~~~~~--~vVvg 131 (453)
.++||||+||||++|++|||.|++.|.+.||++++++++||++|||||+||+.|++++++.++. +++.++ +||||
T Consensus 5 ~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~ 84 (445)
T PRK14340 5 MGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVL 84 (445)
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 3468999999999999999999999999999999999999999999999999999999998764 445554 59999
Q ss_pred ccccCCchh-h-hcCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCC-CCccccccceEEEEEeCCCCCCCcc
Q 012929 132 GCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (453)
Q Consensus 132 Gc~a~~~~e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~~~~~~~~i~isrGC~~~Cs 207 (453)
||+|+..++ + +.++ .|.|+|.+++..|++++.....+.....+...+.+.+ .+|..+.....++|++|||||++|+
T Consensus 85 GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~Cs 164 (445)
T PRK14340 85 GCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMCA 164 (445)
T ss_pred CcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCCC
Confidence 999999996 4 3455 4679999999999999987655532222221111111 1222223346789999999999999
Q ss_pred ccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHHHHhCCCCCCceEEEEecCCc
Q 012929 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (453)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~ 286 (453)
||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.|+.+. ..++.+||+++.+. . +..++|+++.+|.
T Consensus 165 FC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~-~--~~~rir~~~~~p~ 241 (445)
T PRK14340 165 FCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA-A--PEMRIRFTTSHPK 241 (445)
T ss_pred CCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-C--CCcEEEEccCChh
Confidence 999999999999999999999999999999999999999999998653 35689999998753 3 4568999999999
Q ss_pred ChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHH
Q 012929 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366 (453)
Q Consensus 287 ~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~ 366 (453)
.+++++ +..|++.+.+|+++|+|+||+|+++|+.|||+++.+++.++++.+++.+||+.+.+|||+||||||++||++
T Consensus 242 ~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~ 319 (445)
T PRK14340 242 DISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRA 319 (445)
T ss_pred hcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHH
Confidence 888876 555666667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCC
Q 012929 367 TVNLIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQR 430 (453)
Q Consensus 367 tl~~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~ 430 (453)
|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||+.++++
T Consensus 320 tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~--~~v-G~~~~vlve~~~~~~ 396 (445)
T PRK14340 320 TLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQ--RAV-GSVVEVLAESESRRS 396 (445)
T ss_pred HHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEecccCC
Confidence 999999999999999999999999998 78999999999 33334 777 999999999754332
Q ss_pred -CeeEEecCCCeEEEEcC
Q 012929 431 -NVLFGMTKQFHLYLVVT 447 (453)
Q Consensus 431 -~~~~g~~~~y~~v~~~~ 447 (453)
+.++|||++|.+|.++.
T Consensus 397 ~~~~~grt~~~~~v~~~~ 414 (445)
T PRK14340 397 SEQLMGRTDGNRVVVFDR 414 (445)
T ss_pred CCeEEEECCCCeEEEECC
Confidence 36889999999999864
No 4
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.5e-78 Score=627.50 Aligned_cols=384 Identities=30% Similarity=0.476 Sum_probs=329.4
Q ss_pred CCCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhCC--CCEEE
Q 012929 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK--KPLVV 130 (453)
Q Consensus 56 ~~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~~--~~vVv 130 (453)
..++++||+||||+||++|||.|++.|.+.||++++++++||+||||||||++.|+++++..| +++++.+ .+|+|
T Consensus 64 ~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~v 143 (509)
T PRK14327 64 GNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIGV 143 (509)
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999998 4555554 45899
Q ss_pred EccccCCch---hh-hcCC-ccEEEcCCChhHHHHHHHHHhcCCce--eeccccCCCCCCCccccccceEEEEEeCCCCC
Q 012929 131 AGCVPQGSR---DL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203 (453)
Q Consensus 131 gGc~a~~~~---e~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~--~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~ 203 (453)
+||+||..+ ++ +.++ .|.|+|++++..+++++...+.+... ..+........++|..+.....++|+|++|||
T Consensus 144 ~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~v~I~~GC~ 223 (509)
T PRK14327 144 CGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCD 223 (509)
T ss_pred EcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccccccccccccccCCCeEEEEEecCCCC
Confidence 999999998 43 4565 56799999999999999876544321 11111000011245444456789999999999
Q ss_pred CCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEE
Q 012929 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRI 280 (453)
Q Consensus 204 ~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~ 280 (453)
++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+|++.|.+ + +..|+|+
T Consensus 224 ~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~-~---~i~~ir~ 299 (509)
T PRK14327 224 KFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK-I---DIPRVRF 299 (509)
T ss_pred CCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh-C---CCceEEE
Confidence 99999999999999999999999999999999999999999999999997642 357899999875 3 5679999
Q ss_pred EecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCC
Q 012929 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360 (453)
Q Consensus 281 ~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET 360 (453)
++++|..+++++ +..+.+.+.+|+++|+|+||||+++|+.|+|+|+.+++.++++.+++++|++.+++|||+||||||
T Consensus 300 ~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET 377 (509)
T PRK14327 300 TTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPNET 377 (509)
T ss_pred eecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCC
Confidence 989999998877 665666667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEee
Q 012929 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFS 425 (453)
Q Consensus 361 ~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~ 425 (453)
++||++|++|+++++++.+++|.|+|+||||++ ++|.++|.+++ .+.+. +++ |++++||||+
T Consensus 378 ~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~--~~~-G~~~~VLve~ 454 (509)
T PRK14327 378 DEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMK--RYE-GQTVEVLVEG 454 (509)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEe
Confidence 999999999999999999999999999999999 68999999999 23333 777 9999999998
Q ss_pred eeCC-CCeeEEecCCCeEEEEcCC
Q 012929 426 LDDQ-RNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 426 ~~~~-~~~~~g~~~~y~~v~~~~~ 448 (453)
.+++ ++.+.|||++|.+|.|+.+
T Consensus 455 ~~~~~~~~~~Grt~~~~~V~~~~~ 478 (509)
T PRK14327 455 ESKKNPEVLAGYTRKNKLVNFKGP 478 (509)
T ss_pred cccCCCceEEEECCCCcEEEECCC
Confidence 6543 2368899999999999754
No 5
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.7e-77 Score=621.16 Aligned_cols=380 Identities=23% Similarity=0.431 Sum_probs=324.9
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHH---HhhC--CCCEEEEc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSA--KKPLVVAG 132 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~---~~~~--~~~vVvgG 132 (453)
++||||+||||+||++|||.|.+.|.+.||++++++++||+|+||||||+++|++++++.+.. +|+. +.+|||||
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 89 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVLG 89 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 578999999999999999999999999999999999999999999999999999999887554 3443 35699999
Q ss_pred cccCCchh-h-h-cCCccEEEcCCChhHHHHHHHHHhcCCceeeccc-cCCCCC-CCccccccceEEEEEeCCCCCCCcc
Q 012929 133 CVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (453)
Q Consensus 133 c~a~~~~e-~-~-~~~~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~-~~~~~~-~~p~~~~~~~~~~i~isrGC~~~Cs 207 (453)
||||..|+ + . ..+.|.|+|..++..++++++....|........ .....+ ++|......+.++|+|+||||++|+
T Consensus 90 C~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~Cs 169 (449)
T PRK14332 90 CMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCT 169 (449)
T ss_pred cccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCC
Confidence 99999996 3 2 3456789999999999999988765543211111 000011 1222122346789999999999999
Q ss_pred ccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcC
Q 012929 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (453)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (453)
||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+ ...|.+||+++.+ +. +..|+|+++.+|..
T Consensus 170 FC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 245 (449)
T PRK14332 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLD-ET--TIERIRFTSPHPKD 245 (449)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhc-CC--CcceEEEECCCccc
Confidence 99999999999999999999999999999999999999999999875 3468999998865 33 67899999999999
Q ss_pred hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHH
Q 012929 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (453)
Q Consensus 288 i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~t 367 (453)
+++++ +..|++.+++|+++|+|+||+|+++|+.|||+++.+++.++++.+++++|++.+.+|||+||||||++||++|
T Consensus 246 ~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~t 323 (449)
T PRK14332 246 FPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDT 323 (449)
T ss_pred CCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHH
Confidence 88876 5556666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCC-
Q 012929 368 VNLIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQR- 430 (453)
Q Consensus 368 l~~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~- 430 (453)
++|+++++++.+++|.|||+||||++ ++|.++|+++| .+.+. +++ |++++||||+.++++
T Consensus 324 l~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~--~~v-G~~~~vlve~~~~~~~ 400 (449)
T PRK14332 324 LAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNR--ARI-GRVYSILIENTSRKSE 400 (449)
T ss_pred HHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEEEEeccCCCC
Confidence 99999999999999999999999997 79999999999 33344 777 999999999865433
Q ss_pred CeeEEecCCCeEEEEc
Q 012929 431 NVLFGMTKQFHLYLVV 446 (453)
Q Consensus 431 ~~~~g~~~~y~~v~~~ 446 (453)
+.++|||++|.+|+|+
T Consensus 401 ~~~~gr~~~~~~v~~~ 416 (449)
T PRK14332 401 KQLCGRTPCGRMTVFP 416 (449)
T ss_pred CeEEEECCCCeEEEEe
Confidence 3689999999999887
No 6
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.6e-77 Score=620.50 Aligned_cols=387 Identities=26% Similarity=0.445 Sum_probs=327.0
Q ss_pred CCCCCCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhC--CCC
Q 012929 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKP 127 (453)
Q Consensus 53 ~~~~~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~--~~~ 127 (453)
...|+++||||+||||++|++|||.|++.|.+.||++++++++||+|+||||||++.|++++++.+ +++|+. +.+
T Consensus 18 ~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ 97 (467)
T PRK14329 18 AKPKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLI 97 (467)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcE
Confidence 446788999999999999999999999999999999999999999999999999999999999998 555554 457
Q ss_pred EEEEccccCCchh-h-hcCC-ccEEEcCCChhHHHHHHHHHhcCCceeecc---ccCCCCCCCccccccceEEEEEeCCC
Q 012929 128 LVVAGCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPKVRRNKFVEILPINVG 201 (453)
Q Consensus 128 vVvgGc~a~~~~e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~---~~~~~~~~~p~~~~~~~~~~i~isrG 201 (453)
||||||||+..|+ + ...+ .|.|+|...+..|+++++....|....... ...+.....+.......+++|+||||
T Consensus 98 ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrG 177 (467)
T PRK14329 98 VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNGVSAFVSIMRG 177 (467)
T ss_pred EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCCcEEEEEeccC
Confidence 9999999999986 3 3445 678888888899999998766554321111 01111110011112346789999999
Q ss_pred CCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCCCCC
Q 012929 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPDG 274 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-------~~l~~Ll~~l~~~i~~~~ 274 (453)
||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+.+.+.. +
T Consensus 178 Cp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~---~ 254 (467)
T PRK14329 178 CDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV---P 254 (467)
T ss_pred cccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---C
Confidence 9999999999999999999999999999999999999999999999999986532 36889999887643 3
Q ss_pred CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Q 012929 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (453)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv 354 (453)
..++|+++.+|..+++++ +..|.+.+++|+++|+|+||+|+++|+.|||+++.+++.++++.+++..|++.+.+|||+
T Consensus 255 ~~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~Iv 332 (467)
T PRK14329 255 DMRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIA 332 (467)
T ss_pred CcEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEE
Confidence 468999989999888766 555556566899999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH----HHhhhhhcccCCeE
Q 012929 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL----FSNYKFTVMLISIL 418 (453)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~----~~~~~~~~~~~G~~ 418 (453)
||||||++||++|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++
T Consensus 333 GfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~--~~~-G~~ 409 (467)
T PRK14329 333 GFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERNQ--RDI-GKT 409 (467)
T ss_pred eCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCE
Confidence 999999999999999999999999999999999999999 78999999999 33334 777 999
Q ss_pred EEEEEeeeeCC-CCeeEEecCCCeEEEEcC
Q 012929 419 VKLHYFSLDDQ-RNVLFGMTKQFHLYLVVT 447 (453)
Q Consensus 419 ~~vlve~~~~~-~~~~~g~~~~y~~v~~~~ 447 (453)
++||||+..++ ++.+.|||++|.+|.++.
T Consensus 410 ~~vlve~~~~~~~~~~~g~t~~~~~v~~~~ 439 (467)
T PRK14329 410 FEVLIEGVSKRSREQLFGRNSQNKVVVFPK 439 (467)
T ss_pred EEEEEEecccCCCCeEEEECCCCeEEEECC
Confidence 99999975332 236889999999999864
No 7
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.1e-77 Score=619.37 Aligned_cols=385 Identities=26% Similarity=0.449 Sum_probs=321.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHH---HhhC-CCCEEEEccc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSA-KKPLVVAGCV 134 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~---~~~~-~~~vVvgGc~ 134 (453)
|||||+||||+||++|||.|++.|.+.||++++++++||+|||||||||+.|+++++..+.. +|+. +++|||||||
T Consensus 1 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~ 80 (455)
T PRK14335 1 MTYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCM 80 (455)
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEeccc
Confidence 48999999999999999999999999999999999999999999999999999998875443 3332 3569999999
Q ss_pred cCCchh-h-hcCC-ccEEEcCCChhHHHHHHHHHhcC---Cce--e----eccccCCCCCCC-cc-ccccceEEEEEeCC
Q 012929 135 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKG---HEV--R----LLHRKKLPALDL-PK-VRRNKFVEILPINV 200 (453)
Q Consensus 135 a~~~~e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g---~~~--~----~~~~~~~~~~~~-p~-~~~~~~~~~i~isr 200 (453)
|+..|+ + +.++ .|.|+|++++..|++++++...+ ... . .++..++|...+ |. ++....+++|+|+|
T Consensus 81 a~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~r 160 (455)
T PRK14335 81 AERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMN 160 (455)
T ss_pred ccchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhc
Confidence 999996 4 4465 56799999999999988765321 110 0 011112222221 21 12235678999999
Q ss_pred CCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----CCCHHHHHHHHHHhCC-CCCC
Q 012929 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELP-PDGS 275 (453)
Q Consensus 201 GC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~----~~~l~~Ll~~l~~~i~-~~~~ 275 (453)
|||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||++|.+... ..+.
T Consensus 161 GC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 240 (455)
T PRK14335 161 GCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQI 240 (455)
T ss_pred CCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCc
Confidence 9999999999999999999999999999999999999999999999999996431 1368999999853211 0157
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEe
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG 355 (453)
.|+|+.+++|..+++++ +..|++.+.+|+++|+|+||+|+++|+.|||+++.+++.++++.+++.+||+.+.+|||+|
T Consensus 241 ~~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvG 318 (455)
T PRK14335 241 RWIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIG 318 (455)
T ss_pred eEEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 89999999999988877 6656665679999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEE
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVK 420 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~ 420 (453)
|||||+++|++|++|+++++++.+++|.|+|+||||+| ++|.++|++++ .+.+. +++ |++.+
T Consensus 319 fPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~--~~~-G~~~~ 395 (455)
T PRK14335 319 FPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMK--ARV-GKTLP 395 (455)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEE
Confidence 99999999999999999999999999999999999999 89999999999 33333 777 99999
Q ss_pred EEEeeeeCC-CCeeEEecCCCeEEEEcCC
Q 012929 421 LHYFSLDDQ-RNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 421 vlve~~~~~-~~~~~g~~~~y~~v~~~~~ 448 (453)
||||+..++ ++.++|||++|.+|.++.+
T Consensus 396 vlve~~~~~~~~~~~g~t~~~~~v~~~~~ 424 (455)
T PRK14335 396 VLVESRSRNNPEELFGHTELGEMTVLEGK 424 (455)
T ss_pred EEEeccccCCCCeeEEECCCCeEEEEcCC
Confidence 999974332 2368899999999998743
No 8
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.3e-77 Score=616.40 Aligned_cols=380 Identities=31% Similarity=0.518 Sum_probs=326.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH----hhCCCCEEEEccc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC----KSAKKPLVVAGCV 134 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~----~~~~~~vVvgGc~ 134 (453)
+||||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|++.|+++++++++++ |+++++|||||||
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~ 80 (434)
T PRK14330 1 MKFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCV 80 (434)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECcc
Confidence 489999999999999999999999999999999999999999999999999999999999998 6668899999999
Q ss_pred cCCchh-hhcCCccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCC--CCccccccceEEEEEeCCCCCCCcccccc
Q 012929 135 PQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKT 211 (453)
Q Consensus 135 a~~~~e-~~~~~~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~i~isrGC~~~CsFC~~ 211 (453)
|+..|+ +.+..+|.|+|..++..|++++++...|....... ...+.. ..|..+....+++|+++||||++|+||++
T Consensus 81 a~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~i 159 (434)
T PRK14330 81 AEKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKVALFE-DKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIV 159 (434)
T ss_pred ccCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCceEeec-ccccccccccccccCCCcEEEEEcccCCCCCCCCCce
Confidence 999997 44445567999998899999999887665321111 111111 11222223467899999999999999999
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChh
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~ 289 (453)
|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.+.+ ++ +..++|+.+.+|..++
T Consensus 160 p~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~ 236 (434)
T PRK14330 160 PYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFS 236 (434)
T ss_pred ECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcC
Confidence 99999999999999999999999999999999999999998764 3578999988865 44 6678888888998888
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~ 369 (453)
+++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++..||+.+.+|||+||||||+++|++|++
T Consensus 237 ~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~ 314 (434)
T PRK14330 237 DEL--IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVD 314 (434)
T ss_pred HHH--HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHH
Confidence 766 554555566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCCee
Q 012929 370 LIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRNVL 433 (453)
Q Consensus 370 ~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~~~ 433 (453)
|+++++++++++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||+..++ +.+
T Consensus 315 fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~~~-~~~ 390 (434)
T PRK14330 315 LVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNE--RYL-GKTVEIIVEAKAKN-GLF 390 (434)
T ss_pred HHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEEccCC-CeE
Confidence 999999999999999999999998 68899999999 33333 777 99999999975333 368
Q ss_pred EEecCCCeEEEEcCC
Q 012929 434 FGMTKQFHLYLVVTH 448 (453)
Q Consensus 434 ~g~~~~y~~v~~~~~ 448 (453)
.|||++|.+|.++.+
T Consensus 391 ~g~t~~~~~v~~~~~ 405 (434)
T PRK14330 391 YGRDIRNKIIAFEGE 405 (434)
T ss_pred EEECCCCEEEEECCC
Confidence 899999999998643
No 9
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8e-76 Score=609.20 Aligned_cols=381 Identities=32% Similarity=0.536 Sum_probs=325.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhC--CCCEEEEcc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGC 133 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~--~~~vVvgGc 133 (453)
|||||+||||++|++|||.|++.|.+.||++++++++||+++|||||||+.|++++++.| +++|+. +.+||||||
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc 80 (437)
T PRK14331 1 MKYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGC 80 (437)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 489999999999999999999999999999999999999999999999999999999888 566654 457999999
Q ss_pred ccCCchh-h-hcCC-ccEEEcCCChhHHHHHHHHHhcCCce-eecccc--CCCCCC-CccccccceEEEEEeCCCCCCCc
Q 012929 134 VPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEV-RLLHRK--KLPALD-LPKVRRNKFVEILPINVGCLGAC 206 (453)
Q Consensus 134 ~a~~~~e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~-~~~~~~--~~~~~~-~p~~~~~~~~~~i~isrGC~~~C 206 (453)
||+..|+ + +..+ .|.|+|...+..++++++....+... ...... ..+.++ +|..+.....++++++||||++|
T Consensus 81 ~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~C 160 (437)
T PRK14331 81 LAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKC 160 (437)
T ss_pred hhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCC
Confidence 9999995 3 4565 46799999989999999876554321 111110 011111 23333334678999999999999
Q ss_pred cccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEEEecCC
Q 012929 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (453)
Q Consensus 207 sFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p 285 (453)
+||.+|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.+.. ..+.+|++++.+ ++ +..|+++++.+|
T Consensus 161 sFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p 237 (437)
T PRK14331 161 TYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHP 237 (437)
T ss_pred ccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCc
Confidence 99999999999999999999999999999999999999999999987743 578999999876 34 567899998899
Q ss_pred cChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHH
Q 012929 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365 (453)
Q Consensus 286 ~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~ 365 (453)
..+++++ +..|++.+.+|+++|+|+||||+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||+
T Consensus 238 ~~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~ 315 (437)
T PRK14331 238 RDLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFE 315 (437)
T ss_pred ccCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHH
Confidence 8888876 55565655689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCC
Q 012929 366 QTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQR 430 (453)
Q Consensus 366 ~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~ 430 (453)
+|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||+... +
T Consensus 316 ~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-g~~~~vlve~~~~-~ 391 (437)
T PRK14331 316 ETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKAL--SYE-GTVQEVLVEEEKE-G 391 (437)
T ss_pred HHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEEecC-C
Confidence 9999999999999999999999999999 78999999999 33333 777 9999999997532 3
Q ss_pred CeeEEecCCCeEEEEcCC
Q 012929 431 NVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 431 ~~~~g~~~~y~~v~~~~~ 448 (453)
+.++|||++|.+|.++.+
T Consensus 392 ~~~~g~t~~~~~v~~~~~ 409 (437)
T PRK14331 392 NKLIGRTRTNKWVSIEGS 409 (437)
T ss_pred CcEEEECCCCCEEEECCC
Confidence 368899999999999743
No 10
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.1e-75 Score=612.64 Aligned_cols=384 Identities=28% Similarity=0.493 Sum_probs=324.9
Q ss_pred CCCCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHH---HHHHhhC--CCCEE
Q 012929 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSA--KKPLV 129 (453)
Q Consensus 55 ~~~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~---i~~~~~~--~~~vV 129 (453)
.++.+|+||+||||+||++|||.|++.|.+.||++++++++||+|+||||||++.|+++++.. ++++|+. +.+||
T Consensus 10 ~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~Vv 89 (502)
T PRK14326 10 ARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQIA 89 (502)
T ss_pred CCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 455678999999999999999999999999999999999999999999999999999999944 4555553 56899
Q ss_pred EEccccCCchh-hh-cCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccc---cCCCCCCCccccccceEEEEEeCCCCC
Q 012929 130 VAGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHR---KKLPALDLPKVRRNKFVEILPINVGCL 203 (453)
Q Consensus 130 vgGc~a~~~~e-~~-~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~---~~~~~~~~p~~~~~~~~~~i~isrGC~ 203 (453)
||||||+..|+ +. ..+ .|.|+|+.++..|++++.+...+........ ..+|. .+|..+...+.++|+||||||
T Consensus 90 vgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isrGCp 168 (502)
T PRK14326 90 VGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISVGCN 168 (502)
T ss_pred EECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEccCCC
Confidence 99999999997 33 444 5679999999999999988765543211111 11121 123222334568999999999
Q ss_pred CCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEE
Q 012929 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIG 281 (453)
Q Consensus 204 ~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~ 281 (453)
++|+||++|.++|+.|+||+++|++|++.+++.|+++|+|+|+|++.||.+.. ..|.+|++.+.. +. +..|+|++
T Consensus 169 ~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~ir~~ 245 (502)
T PRK14326 169 NTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERVRFT 245 (502)
T ss_pred CCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEEEEe
Confidence 99999999999999999999999999999999999999999999999987642 357889988865 44 66789999
Q ss_pred ecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCH
Q 012929 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361 (453)
Q Consensus 282 ~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ 361 (453)
+.+|..+++++ +..|.+.+.+|++||+|+||+|+++|+.|||+++.+++.++++.+++..||+.+.+|||+||||||+
T Consensus 246 ~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~ 323 (502)
T PRK14326 246 SPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETE 323 (502)
T ss_pred ccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCH
Confidence 99999888776 6556565667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeee
Q 012929 362 EDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSL 426 (453)
Q Consensus 362 ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~ 426 (453)
+||++|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||+.
T Consensus 324 edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~--~~v-g~~~~vLve~~ 400 (502)
T PRK14326 324 EDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENR--KLV-GRTVELLVATG 400 (502)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEec
Confidence 99999999999999999999999999999999 67999999998 44455 787 99999999852
Q ss_pred -eCCC---CeeEEecCCCeEEEEcC
Q 012929 427 -DDQR---NVLFGMTKQFHLYLVVT 447 (453)
Q Consensus 427 -~~~~---~~~~g~~~~y~~v~~~~ 447 (453)
+.++ ..+.||+++|..|.|+.
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~V~~~~ 425 (502)
T PRK14326 401 EGRKDAATHRMSGRARDGRLVHFTV 425 (502)
T ss_pred ccccCCcCceeEEECCCCCEEEEcc
Confidence 1111 35789999999999864
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-75 Score=608.83 Aligned_cols=380 Identities=30% Similarity=0.530 Sum_probs=325.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEcc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAGC 133 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~---~~~--~~~vVvgGc 133 (453)
+||||+||||++|++|||.|.+.|.+.||++++++++||++|||||+||+.|++++++.|+++ ++. +.+||||||
T Consensus 7 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~Gc 86 (448)
T PRK14333 7 RSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAGC 86 (448)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 699999999999999999999999999999999999999999999999999999998888765 343 457999999
Q ss_pred ccCCchh-hh-cCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCC-CCcccc-ccceEEEEEeCCCCCCCccc
Q 012929 134 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTY 208 (453)
Q Consensus 134 ~a~~~~e-~~-~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~i~isrGC~~~CsF 208 (453)
|||..|+ +. .++ .|.|+|++++..|++++++...|... +.....+.+ ++|..+ .....++|++++|||++|+|
T Consensus 87 ~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~CsF 164 (448)
T PRK14333 87 VAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQV--VATEEIHILEDITKPRRDSSITAWVNVIYGCNERCTY 164 (448)
T ss_pred cCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCce--eecccccccccccccccCCCeeEEEEhhcCCCCCCCC
Confidence 9999997 43 455 57899999999999999887655422 111111111 222211 12357899999999999999
Q ss_pred cccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---------CCHHHHHHHHHHhCCCCCCceEE
Q 012929 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTMLR 279 (453)
Q Consensus 209 C~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~---------~~l~~Ll~~l~~~i~~~~~~~ir 279 (453)
|.+|.++|+.|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.+ ..|.+||+.+.+ ++ +..|++
T Consensus 165 C~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~rir 241 (448)
T PRK14333 165 CVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERIR 241 (448)
T ss_pred CceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEEE
Confidence 999999999999999999999999999999999999999999986632 278999999876 45 677899
Q ss_pred EEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCC
Q 012929 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (453)
Q Consensus 280 ~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgE 359 (453)
+++++|..+++++ +..++..+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++|++.+.+|||+|||||
T Consensus 242 ~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgE 319 (448)
T PRK14333 242 FATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPGE 319 (448)
T ss_pred ECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCCC
Confidence 9888999888876 55555666789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEe
Q 012929 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYF 424 (453)
Q Consensus 360 T~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve 424 (453)
|+++|++|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||
T Consensus 320 T~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve 396 (448)
T PRK14333 320 TEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQ--RYL-GRIEEVLVE 396 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEE
Confidence 9999999999999999999999999999999998 89999999999 33334 777 999999999
Q ss_pred eeeCC-CCeeEEecCCCeEEEEcCC
Q 012929 425 SLDDQ-RNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 425 ~~~~~-~~~~~g~~~~y~~v~~~~~ 448 (453)
+...+ ++.++|||++|.+|.++.+
T Consensus 397 ~~~~~~~~~~~g~t~~~~~v~~~~~ 421 (448)
T PRK14333 397 GINPKDPSQVMGRTRTNRLTFFEGD 421 (448)
T ss_pred ecccCCCceEEEECCCCcEEEEcCC
Confidence 74332 2468899999999998643
No 12
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.5e-75 Score=603.67 Aligned_cols=379 Identities=26% Similarity=0.434 Sum_probs=320.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hhC--CCCEEEEc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~---~~~--~~~vVvgG 132 (453)
.+||||+||||++|++|||.|++.|.+.||++++. ++||+++|||||||+.|++++++.++++ |+. +.+|||||
T Consensus 3 ~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~G 81 (446)
T PRK14337 3 DRTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGG 81 (446)
T ss_pred CcEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 35899999999999999999999999999999885 7899999999999999999999986655 554 45799999
Q ss_pred cccCCchh-h-hcCC-ccEEEcCCChhHHHHHHHHHhcCCceee-c-cc-cCCCCCCC-ccccccceEEEEEeCCCCCCC
Q 012929 133 CVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRL-L-HR-KKLPALDL-PKVRRNKFVEILPINVGCLGA 205 (453)
Q Consensus 133 c~a~~~~e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~-~-~~-~~~~~~~~-p~~~~~~~~~~i~isrGC~~~ 205 (453)
|+||..++ + ..++ .|.|+|..++..++++++....++.... + +. ..++.... +........++|+|+||||++
T Consensus 82 C~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~ 161 (446)
T PRK14337 82 CVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNF 161 (446)
T ss_pred CccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCC
Confidence 99999886 3 3665 4679999999999999887654322111 1 10 11122111 122223567899999999999
Q ss_pred ccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCCCCCCceEEEEe
Q 012929 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGM 282 (453)
Q Consensus 206 CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~ 282 (453)
|+||++|..+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|. ...+.+|++++.+ ++ +..++|+++
T Consensus 162 CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~ 238 (446)
T PRK14337 162 CAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTT 238 (446)
T ss_pred CcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEcc
Confidence 99999999999999999999999999999999999999999999998764 2478999999876 44 667899998
Q ss_pred cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHH
Q 012929 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 362 (453)
Q Consensus 283 ~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~e 362 (453)
.+|..+++++ +..+...+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++..|++.+.+|||+||||||++
T Consensus 239 ~~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~e 316 (446)
T PRK14337 239 PHPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEE 316 (446)
T ss_pred CCcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHH
Confidence 9999998776 55555556789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeee
Q 012929 363 DFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLD 427 (453)
Q Consensus 363 d~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~ 427 (453)
||++|++|+++++++.+++|.|||+||||++ ++|.++|++++ .+.+. +++ |++++||||+..
T Consensus 317 d~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~--~~v-G~~~~vlve~~~ 393 (446)
T PRK14337 317 DFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQ--ARV-GRKTTVLLEGPS 393 (446)
T ss_pred HHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEecc
Confidence 9999999999999999999999999999999 79999999999 33333 777 999999999743
Q ss_pred CC----CCeeEEecCCCeEEEE
Q 012929 428 DQ----RNVLFGMTKQFHLYLV 445 (453)
Q Consensus 428 ~~----~~~~~g~~~~y~~v~~ 445 (453)
.+ +..+.|+|.+|.+|.+
T Consensus 394 ~~~~~~~~~~~g~~~~~~~v~v 415 (446)
T PRK14337 394 RKPGEGGDSWQGRDPGGRVVNV 415 (446)
T ss_pred ccCCCCCceEEEECCCCeEEEE
Confidence 22 1357899999998755
No 13
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.2e-74 Score=602.15 Aligned_cols=383 Identities=30% Similarity=0.482 Sum_probs=322.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hh--CCCCEEEEc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KS--AKKPLVVAG 132 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~---~~--~~~~vVvgG 132 (453)
|+||+|+||||++|++|||.|++.|.+.||+++++.++||+++||||||++.|++++++.++++ |+ ++.+|||||
T Consensus 3 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999988875544 55 356899999
Q ss_pred cccCCchh-hh-cCC-ccEEEcCCChhHHHHHHHHHh-cCCceeeccccCCCCCC-CccccccceEEEEEeCCCCCCCcc
Q 012929 133 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (453)
Q Consensus 133 c~a~~~~e-~~-~~~-~d~vvG~~~~~~l~~~l~~~~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~i~isrGC~~~Cs 207 (453)
|||+..|+ +. ..+ .|.|+|+.++..|++++++.. .|...........+.++ +|..+.....++++|+||||++|+
T Consensus 83 c~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~Cs 162 (444)
T PRK14325 83 CVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCT 162 (444)
T ss_pred chhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCCC
Confidence 99999997 33 354 578999988899999998764 44322111111111221 232222346789999999999999
Q ss_pred ccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCCceEEEEec
Q 012929 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 283 (453)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~-d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~~ 283 (453)
||++|..+|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...+.+|++++.+ ++ +..++|+++.
T Consensus 163 FC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 239 (444)
T PRK14325 163 FCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTTS 239 (444)
T ss_pred ccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEccC
Confidence 9999999999999999999999999999999999999999999943 21 2368999999875 44 6678999888
Q ss_pred CCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHH
Q 012929 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (453)
Q Consensus 284 ~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed 363 (453)
+|..+++++ +..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.++++.||+.+.+|||+||||||+++
T Consensus 240 ~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed 317 (444)
T PRK14325 240 HPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDED 317 (444)
T ss_pred CcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHH
Confidence 999888776 555556566899999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeC
Q 012929 364 FNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDD 428 (453)
Q Consensus 364 ~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~ 428 (453)
|++|++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++.+||||+..+
T Consensus 318 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-g~~~~vlve~~~~ 394 (444)
T PRK14325 318 FEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSR--SMV-GTVQRVLVEGPSR 394 (444)
T ss_pred HHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEEEEEeec
Confidence 999999999999999999999999999999 78999999999 33333 777 9999999997543
Q ss_pred CCCeeEEecCCCeEEEEcCC
Q 012929 429 QRNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 429 ~~~~~~g~~~~y~~v~~~~~ 448 (453)
+++.++|||++|.+|.|+.+
T Consensus 395 ~~~~~~g~t~~~~~v~~~~~ 414 (444)
T PRK14325 395 KDGQLIGRTENNRVVNFEGD 414 (444)
T ss_pred CCCeEEEECCCCcEEEECCC
Confidence 32368899999999999753
No 14
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.1e-74 Score=594.38 Aligned_cols=362 Identities=27% Similarity=0.462 Sum_probs=314.5
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhC--CCCEEEEc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAG 132 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~--~~~vVvgG 132 (453)
|++|||+||||++|++|||.|++.|.+.||++++++++||+++||||+|++.|++++++.+ +++++. +++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999999544 445554 45799999
Q ss_pred cccCCchh-hh-cCCc-cEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCcccc
Q 012929 133 CVPQGSRD-LK-ELEG-VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209 (453)
Q Consensus 133 c~a~~~~e-~~-~~~~-d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC 209 (453)
|+|+..++ +. .++. |.|+|+++...+.+.+... .+|. .....++|+|+||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 99999996 44 5664 6799998866666554311 0111 134678999999999999999
Q ss_pred ccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcC
Q 012929 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (453)
Q Consensus 210 ~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (453)
++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+++.+ ++ +..++|+.+.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999975 45 66799999899998
Q ss_pred hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHH
Q 012929 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (453)
Q Consensus 288 i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~t 367 (453)
+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||+++|++|
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~t 296 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQS 296 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHH
Confidence 88776 5555566678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCC
Q 012929 368 VNLIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRN 431 (453)
Q Consensus 368 l~~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~ 431 (453)
++|+++++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++.+||||+.. ++
T Consensus 297 l~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~--~~ 371 (418)
T PRK14336 297 YKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANA--ALM-DTFAEVLVEGLQ--KN 371 (418)
T ss_pred HHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEEcC--CC
Confidence 99999999999999999999999999 78999999999 33333 776 999999999742 23
Q ss_pred eeEEecCCCeEEEEcCC
Q 012929 432 VLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 432 ~~~g~~~~y~~v~~~~~ 448 (453)
.+.|||.+|.+|.++.+
T Consensus 372 ~~~g~~~~~~~v~~~~~ 388 (418)
T PRK14336 372 KWQGRTLGGKLVFLESD 388 (418)
T ss_pred eEEEECCCCeEEEECCC
Confidence 57899999999998753
No 15
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=1.9e-74 Score=595.67 Aligned_cols=378 Identities=44% Similarity=0.766 Sum_probs=321.4
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCch
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (453)
|+||+||||++|++|||+|++.|.+.||++++++++||+++||||||++.|++++++.|+++++.+++|||||||||..|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 68999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred h-hhcC-CccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCccccccccccCc
Q 012929 140 D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217 (453)
Q Consensus 140 e-~~~~-~~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~ 217 (453)
+ +... +.+.++|+.++..+++++.......... .. ......+.|..+.....++|+||||||++|+||.+|..+|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 7 4433 4567889999999998887654321110 00 00111122333334578999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
+|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.+..+.+|++.+.+ ++ +..++|+++++|..+....+++.+
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l~~ 235 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDELAN 235 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHHHH
Confidence 999999999999999999999999999999999998765679999988865 54 567899999998754433344555
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
++..+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|+++++++
T Consensus 236 ~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~ 315 (420)
T TIGR01578 236 VYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPE 315 (420)
T ss_pred HHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 55566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCHhH----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCCeeEEecCCCeEE
Q 012929 378 QVHISQFYPRPGIQFL----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLY 443 (453)
Q Consensus 378 ~i~i~~~sp~pGT~~~----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~~~~y~~v 443 (453)
.+++|+|+|+||||++ ++|.++|++++ .+.+. +++ |++.+||||+.+. ++.+.|++ +|.+|
T Consensus 316 ~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~~-~~~~~~~~-~~~~v 390 (420)
T TIGR01578 316 KINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRD--NLI-GTRVHVLVTKEGK-GDSLDDED-AYRQV 390 (420)
T ss_pred EEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEecCC-CCeeeeCC-CCcEE
Confidence 9999999999999999 78999999999 23333 777 9999999997433 33566765 99988
Q ss_pred EEcC
Q 012929 444 LVVT 447 (453)
Q Consensus 444 ~~~~ 447 (453)
.+..
T Consensus 391 ~~~~ 394 (420)
T TIGR01578 391 VIRS 394 (420)
T ss_pred EEcC
Confidence 8864
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5e-74 Score=596.10 Aligned_cols=382 Identities=29% Similarity=0.487 Sum_probs=322.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHH---HHHHHHhhCC--CCEEEEcc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD---TLIAKCKSAK--KPLVVAGC 133 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~---~~i~~~~~~~--~~vVvgGc 133 (453)
+||||+||||++||+|||.|++.|.+.||+++++.++||+++|||||||+.|+++++ ..++++++.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 579999999999999999999999999999999999999999999999999999998 4455555544 46999999
Q ss_pred ccCC--chh-hh-cCC-ccEEEcCCChhHHHHHHHHHhcCC-ceeeccccCCCCC-CCccccccceEEEEEeCCCCCCCc
Q 012929 134 VPQG--SRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (453)
Q Consensus 134 ~a~~--~~e-~~-~~~-~d~vvG~~~~~~l~~~l~~~~~g~-~~~~~~~~~~~~~-~~p~~~~~~~~~~i~isrGC~~~C 206 (453)
+||. .|+ +. .++ .|.|+|..++..+++++.....+. ..........+.+ .+|..+.....++|+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 665 43 565 467999999999999998766432 2211111111111 223222245678999999999999
Q ss_pred cccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecC
Q 012929 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (453)
Q Consensus 207 sFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~ 284 (453)
+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.+.+ ++ +..++|+.+++
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999987643 468999999875 44 67789998889
Q ss_pred CcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHH
Q 012929 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364 (453)
Q Consensus 285 p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~ 364 (453)
|..+++++ +..|...+.+|+++|+|+||+|+++|+.|||+++.+++.++++.+++++|++.+.+|||+||||||++||
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~ 316 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDF 316 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHH
Confidence 99888876 5556565668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCC
Q 012929 365 NQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQ 429 (453)
Q Consensus 365 ~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~ 429 (453)
++|++|+++++++.+++|.|+|+||||++ ++|.++|.+++ .+.+. +++ |++++||+|+...+
T Consensus 317 ~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-g~~~~vl~e~~~~~ 393 (439)
T PRK14328 317 EETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNK--EYE-GKIVEVLVEGPSKN 393 (439)
T ss_pred HHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEecccC
Confidence 99999999999999999999999999999 78899999999 23333 777 99999999975332
Q ss_pred C-CeeEEecCCCeEEEEcCC
Q 012929 430 R-NVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 430 ~-~~~~g~~~~y~~v~~~~~ 448 (453)
+ +.+.|||++|.+|.++.+
T Consensus 394 ~~~~~~g~~~~~~~v~~~~~ 413 (439)
T PRK14328 394 DENKLTGRTRTNKLVNFIGD 413 (439)
T ss_pred CCceEEEECCCCeEEEECCC
Confidence 2 368899999999998743
No 17
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=4.6e-74 Score=596.16 Aligned_cols=381 Identities=28% Similarity=0.450 Sum_probs=324.0
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHc-CCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhhC--CCCEEEEcc
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGC 133 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~-g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~--~~~vVvgGc 133 (453)
||+|+||||++|++|||.|++.|.+. ||+++++.++||+++|||||||+.|++++++.| +++++. +++||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 68999999999999999999999999 999999999999999999999999999999988 556554 356999999
Q ss_pred ccCCchh-hh-cCC-ccEEEcCCChhHHHHHHHHHhcCCc-eeeccccCCCCC-CCccccc-cceEEEEEeCCCCCCCcc
Q 012929 134 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 207 (453)
Q Consensus 134 ~a~~~~e-~~-~~~-~d~vvG~~~~~~l~~~l~~~~~g~~-~~~~~~~~~~~~-~~p~~~~-~~~~~~i~isrGC~~~Cs 207 (453)
+||..|+ +. .++ .|.|+|++++..+++++.....+.. ...+.....+.. .+|.... ...+++|+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 9999996 43 355 4679999999999999987654432 111111111111 1233222 346789999999999999
Q ss_pred ccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcC---CCHHHHHHHHHHhCCCCCCceEEEEec
Q 012929 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 283 (453)
Q Consensus 208 FC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y-g~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~ 283 (453)
||.+|..+|+.|++|+++|++|++.+++.|+++|+|+|+|++.| |.+.. ..|.+||+.+.+ .+ +..|+|++++
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 77642 368999999975 34 6789999999
Q ss_pred CCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHH
Q 012929 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 363 (453)
Q Consensus 284 ~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed 363 (453)
+|..+++++ +..|.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.+|||+||||||++|
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed 315 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEED 315 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHH
Confidence 998888876 655656556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeC
Q 012929 364 FNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDD 428 (453)
Q Consensus 364 ~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~ 428 (453)
|++|++|+++++++.+++|.|+|+||||++ ++|.++|.+++ .+.+. +++ |++.+||||+...
T Consensus 316 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~~ 392 (438)
T TIGR01574 316 FEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMR--KQE-GKTFKVLVEGLSR 392 (438)
T ss_pred HHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEeccC
Confidence 999999999999999999999999999999 78999999999 33334 777 9999999997533
Q ss_pred CC-CeeEEecCCCeEEEEcCC
Q 012929 429 QR-NVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 429 ~~-~~~~g~~~~y~~v~~~~~ 448 (453)
++ ..+.|||++|.+|.|+.+
T Consensus 393 ~~~~~~~g~t~~~~~v~~~~~ 413 (438)
T TIGR01574 393 NNPEELAGRTENNFLVNFEGS 413 (438)
T ss_pred CCCceEEEECCCCCEEEECCC
Confidence 33 257899999999999753
No 18
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=5.7e-74 Score=592.51 Aligned_cols=375 Identities=30% Similarity=0.516 Sum_probs=320.8
Q ss_pred EEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccCCchh
Q 012929 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 140 (453)
Q Consensus 63 i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~a~~~~e 140 (453)
|+||||++|++|||.|++.|.+.||+.++++++||+|+||||||+..|+++++++++++|+.+ ++||||||||+..|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 589999999999999999999999999999999999999999999999999999999998877 569999999999997
Q ss_pred -hhcCC-ccEEEcCCChhHHHHHHHHHhcCCceeec-----cccCCCCCCCccccccceEEEEEeCCCCCCCcccccccc
Q 012929 141 -LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (453)
Q Consensus 141 -~~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~-----~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~ 213 (453)
+...+ .|.|+|..++..|+++++....+...... ....+|.+++... .....++|++|||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAF-EGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccccc-CCCeEEEEEeccCcCCCCCCCceee
Confidence 44555 46788888888999999765433221111 1111222221111 1245689999999999999999999
Q ss_pred ccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHH
Q 012929 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (453)
Q Consensus 214 ~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~ 291 (453)
.+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.+. ...+.+|++++.+ ++ +..|+|+++++|..++++
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999998764 3578999999875 44 678999999999888877
Q ss_pred HHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHH
Q 012929 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (453)
Q Consensus 292 l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i 371 (453)
+ +..|.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++..||+.+.+|||+||||||+|+|++|++|+
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 6 55555555679999999999999999999999999999999999999777999999999999999999999999999
Q ss_pred HhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCCeeEEe
Q 012929 372 KEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRNVLFGM 436 (453)
Q Consensus 372 ~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~ 436 (453)
++++++.+++|+|+|+||||++ ++|.++|++++ .+.+. +++ |++++||||+.. ++ .++||
T Consensus 315 ~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-g~~~~vlve~~~-~~-~~~g~ 389 (414)
T TIGR01579 315 KEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFLK--KNI-GKELEVLVEKEK-AG-VLTGY 389 (414)
T ss_pred HhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEEEEeCC-CC-eeEEE
Confidence 9999999999999999999999 89999999999 33333 777 999999999742 23 67899
Q ss_pred cCCCeEEEEcCC
Q 012929 437 TKQFHLYLVVTH 448 (453)
Q Consensus 437 ~~~y~~v~~~~~ 448 (453)
|++|.+|.|+.+
T Consensus 390 ~~~~~~v~~~~~ 401 (414)
T TIGR01579 390 SEYYLKVKVESD 401 (414)
T ss_pred CCCCcEEEeCCC
Confidence 999999999754
No 19
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=5.9e-74 Score=594.99 Aligned_cols=378 Identities=33% Similarity=0.580 Sum_probs=325.5
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC---CEEEEccccC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK---PLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~---~vVvgGc~a~ 136 (453)
||||+||||++|++|||.|.+.|.+.||++++++++||+|+||||||++.|+++++++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999988776 8999999999
Q ss_pred Cchhh--hcCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCC-CCcccc-ccceEEEEEeCCCCCCCcccccc
Q 012929 137 GSRDL--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 211 (453)
Q Consensus 137 ~~~e~--~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~i~isrGC~~~CsFC~~ 211 (453)
..|+. ..++ +|.|+|++++..|++++++.. +.....+... .+.+ .+|..+ ....+++|+++||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNIS-KDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceecccc-ccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99963 3454 678999999899999998865 3322222111 1111 123322 23467899999999999999999
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChh
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~ 289 (453)
|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.+.. ..+.+|++++.+ ++ +..|+++++++|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999987643 568999999875 44 6789999989998888
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~ 369 (453)
+++ +..|.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++
T Consensus 236 ~el--l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~ 313 (429)
T TIGR00089 236 DDL--IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLD 313 (429)
T ss_pred HHH--HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHH
Confidence 776 555555555899999999999999999999999999999999999999777999999999999999999999999
Q ss_pred HHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeee-CCCCee
Q 012929 370 LIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLD-DQRNVL 433 (453)
Q Consensus 370 ~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~-~~~~~~ 433 (453)
|+++++++.+++|.|+|+||||++ ++|.++|.+++ .+.+. +++ |++.+||||+.+ .+++.+
T Consensus 314 ~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~~~~~~~~ 390 (429)
T TIGR00089 314 LVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNK--KYV-GKTLEVLVEGEEGKKEGEL 390 (429)
T ss_pred HHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEecccCCCCeE
Confidence 999999999999999999999999 78999999988 33333 777 999999999732 233478
Q ss_pred EEecCCCeEEEEcC
Q 012929 434 FGMTKQFHLYLVVT 447 (453)
Q Consensus 434 ~g~~~~y~~v~~~~ 447 (453)
+||+++|.+|.++.
T Consensus 391 ~g~~~~~~~v~~~~ 404 (429)
T TIGR00089 391 TGRTENYKPVVFEG 404 (429)
T ss_pred EEECCCCeEEEECC
Confidence 89999999999975
No 20
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=2e-73 Score=590.69 Aligned_cols=379 Identities=25% Similarity=0.439 Sum_probs=319.6
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCch
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (453)
++||+||||++||+|||.|++.|.+.||+++++.++||+|+||||+||+.|+++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred h-h-hcCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCcccc-ccceEEEEEeCCCCCCCcccccccccc
Q 012929 140 D-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 215 (453)
Q Consensus 140 e-~-~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~i~isrGC~~~CsFC~~~~~r 215 (453)
+ + ..++ .|.|+|+..+..+.+.+.....+....... ..+....|... ....+++|++|||||++|+||.+|..+
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFKS--EIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCccccc--ccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 7 3 3454 567999988776666665433221110000 01000112211 224678999999999999999999999
Q ss_pred CccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH
Q 012929 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (453)
Q Consensus 216 g~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~ 293 (453)
|++|+||+++|++|++.+++.|+++|+|+|+|++.||.+. ...+.+|++.|.+ ++ +..|+|+.+++|..+++++
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998763 2578999999976 33 4679999999999888776
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
+..|.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++|+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~ 313 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEE 313 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHh
Confidence 5555555567999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCC-CCeeEEec
Q 012929 374 YKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQ-RNVLFGMT 437 (453)
Q Consensus 374 l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~-~~~~~g~~ 437 (453)
++++.+++|.|+|+|||+++ ++|.++|.+++ .+.+. +++ |++.+||||+.+++ ++.+.|||
T Consensus 314 ~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-g~~~~vl~e~~~~~~~~~~~g~~ 390 (430)
T TIGR01125 314 GQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQ--EFV-GKKIEVLIDGYEPETNLLLIGRT 390 (430)
T ss_pred cCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEeccCCCCCcEEEEC
Confidence 99999999999999999998 78999999988 33333 776 99999999975433 23678999
Q ss_pred CCCeE-----EEEcCC
Q 012929 438 KQFHL-----YLVVTH 448 (453)
Q Consensus 438 ~~y~~-----v~~~~~ 448 (453)
++|.+ |.|+.+
T Consensus 391 ~~~~~~~~~~v~~~~~ 406 (430)
T TIGR01125 391 YGQAPEVDGVVYVNGA 406 (430)
T ss_pred ccCCcccCceEEEcCC
Confidence 99998 787643
No 21
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=4.8e-73 Score=587.80 Aligned_cols=372 Identities=23% Similarity=0.378 Sum_probs=313.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCC
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (453)
.+||||+||||++|++|||.|++.|.+.||++++++++||+++||||+|++.|++++++.|+++++.+.+|||+||+|+.
T Consensus 7 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~a~~ 86 (440)
T PRK14862 7 APKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCLGAK 86 (440)
T ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECCcccC
Confidence 36899999999999999999999999999999999999999999999999999999999999987777779999999995
Q ss_pred chh-hhc-CC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCccccccccc
Q 012929 138 SRD-LKE-LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214 (453)
Q Consensus 138 ~~e-~~~-~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~ 214 (453)
++ +.+ ++ .|.|+|+.++..+++++.......... ......+... ......+++|++|||||++|+||++|.+
T Consensus 87 -~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~a~v~isrGCp~~CsFC~ip~~ 161 (440)
T PRK14862 87 -EDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDP-FVDLVPPQGV---KLTPRHYAYLKISEGCNHRCTFCIIPSM 161 (440)
T ss_pred -HHHHHhhCCCceEEECCCCHHHHHHHHHHhhcccccc-ccccCcchhc---ccCCCcEEEEEeccCCCCCCccCCcccc
Confidence 54 444 45 456999999999999887653211100 0000000000 0123567899999999999999999999
Q ss_pred cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC------------CCHHHHHHHHHHhCCCCCCceEEEEe
Q 012929 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTMLRIGM 282 (453)
Q Consensus 215 rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~------------~~l~~Ll~~l~~~i~~~~~~~ir~~~ 282 (453)
+|++|+||+++|++|++.+.+.|+++|+|+++|++.||.|.. ..+.+|+++|.+. +. |+|+.+
T Consensus 162 ~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~----~~-~~r~~~ 236 (440)
T PRK14862 162 RGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL----GA-WVRLHY 236 (440)
T ss_pred cCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhc----CC-EEEEec
Confidence 999999999999999999999999999999999999986631 3688999988763 44 899998
Q ss_pred cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHH
Q 012929 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 362 (453)
Q Consensus 283 ~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~e 362 (453)
++|..+.+++ +. +++.++.|+++|||+||+|+++|+.|||+++.+++.++++.+++..|++.+.++||+||||||++
T Consensus 237 ~~p~~~~del--l~-~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~e 313 (440)
T PRK14862 237 VYPYPHVDEV--IP-LMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEE 313 (440)
T ss_pred CCCCcCCHHH--HH-HHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHH
Confidence 8887766654 44 44446667799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeee
Q 012929 363 DFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLD 427 (453)
Q Consensus 363 d~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~ 427 (453)
+|++|++|+++++++.+++|.|+|+||||++ ++|.++|.+++ .+.+. +++ |++++||||+..
T Consensus 314 df~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-G~~~~vlie~~~ 390 (440)
T PRK14862 314 DFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARLQ--RKV-GRTLQVLIDEVD 390 (440)
T ss_pred HHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEEEEEcC
Confidence 9999999999999999999999999999997 88999999998 33333 777 999999999754
Q ss_pred CCCCeeEEecCCCeE-----EEEcC
Q 012929 428 DQRNVLFGMTKQFHL-----YLVVT 447 (453)
Q Consensus 428 ~~~~~~~g~~~~y~~-----v~~~~ 447 (453)
+++ ++|||++|.+ |.++.
T Consensus 391 ~~~--~~Gr~~~~~~~v~~~v~~~~ 413 (440)
T PRK14862 391 EEG--AIGRSKADAPEIDGVVYLNG 413 (440)
T ss_pred CCC--eEEECcccCccCCCceeccC
Confidence 333 6899999998 77753
No 22
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.9e-72 Score=586.29 Aligned_cols=379 Identities=29% Similarity=0.501 Sum_probs=323.3
Q ss_pred CCCCCCCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHH---HHHHhhCC--C
Q 012929 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSAK--K 126 (453)
Q Consensus 52 ~~~~~~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~---i~~~~~~~--~ 126 (453)
.+..|.++|+||+||||+||++|||.|++.|.+.||++++++++||+||||||+||+.|++++++. ++++|+.+ +
T Consensus 14 ~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~ 93 (459)
T PRK14338 14 RDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRPDT 93 (459)
T ss_pred cccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCCCC
Confidence 466777889999999999999999999999999999999999999999999999999999999977 45555554 5
Q ss_pred CEEEEccccCCchh-h--hcCC-ccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCC
Q 012929 127 PLVVAGCVPQGSRD-L--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 202 (453)
Q Consensus 127 ~vVvgGc~a~~~~e-~--~~~~-~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC 202 (453)
+|||+||+|+..++ + +.++ .|.|+|+.++..+++++...... .. .|.++.+..+.....++++|+|||
T Consensus 94 ~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~i~I~rGC 165 (459)
T PRK14338 94 RIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIYQ-----LD---EPALPVADWSHPPVTVHVPIIYGC 165 (459)
T ss_pred EEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhccc-----cc---cccccccccCCCceEEEEEcccCC
Confidence 79999999999996 4 4565 56799999999999887532110 01 122111111233567899999999
Q ss_pred CCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEE
Q 012929 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRI 280 (453)
Q Consensus 203 ~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~ 280 (453)
|++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|++++.||.+.. ..+.+|++.+.+ ++ +..++++
T Consensus 166 ~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~-~~--gi~~ir~ 242 (459)
T PRK14338 166 NMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE-IP--GLERLRF 242 (459)
T ss_pred CCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-cC--CcceEEE
Confidence 999999999999999999999999999999999999999999999999997642 458899999876 33 5668898
Q ss_pred EecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCC
Q 012929 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360 (453)
Q Consensus 281 ~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET 360 (453)
.+.+|..+++++ +..+.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||
T Consensus 243 ~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET 320 (459)
T PRK14338 243 LTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGET 320 (459)
T ss_pred EecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCC
Confidence 888999898876 555555556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---------------HHHHHHHHHHH----HHhhhhhcccCCeEEEE
Q 012929 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---------------NLDSTELLSLL----FSNYKFTVMLISILVKL 421 (453)
Q Consensus 361 ~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---------------~~R~~~l~~~~----~~~~~~~~~~~G~~~~v 421 (453)
++||++|++++++++++.++++.|+|+|||+++ ++|.++|++++ .+.+. .++ |++.+|
T Consensus 321 ~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~--~~~-G~~~~v 397 (459)
T PRK14338 321 EEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNA--RFL-GQTVEV 397 (459)
T ss_pred HHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEE
Confidence 999999999999999999999999999999999 45888999998 33333 776 999999
Q ss_pred EEeeeeCCCCeeEEecCCCeEEEEcCC
Q 012929 422 HYFSLDDQRNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 422 lve~~~~~~~~~~g~~~~y~~v~~~~~ 448 (453)
|||+.. ++.+.|||++|.+|.++.+
T Consensus 398 lve~~~--~~~~~g~~~~~~~v~~~~~ 422 (459)
T PRK14338 398 LVEGEA--KGKWRGRTRGNKLVFFSAP 422 (459)
T ss_pred EEEEcC--CCeEEEECCCCeEEEECCC
Confidence 999742 3367899999999999753
No 23
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2e-72 Score=583.98 Aligned_cols=378 Identities=26% Similarity=0.425 Sum_probs=319.2
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEEccc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCV 134 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~----~~vVvgGc~ 134 (453)
+||||+||||++|++|||.|++.|.+.||++++++++||++||||||||+.|++++++.|+++++.+ .+|+|+||+
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~ 80 (440)
T PRK14334 1 MKAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCL 80 (440)
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcch
Confidence 3899999999999999999999999999999999999999999999999999999999998886543 348899999
Q ss_pred cCCch-h-hhcC-CccEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCcccccc
Q 012929 135 PQGSR-D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211 (453)
Q Consensus 135 a~~~~-e-~~~~-~~d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~ 211 (453)
|+..+ + +... ..|.|+|++++..+++++..... ........... ..+|........++|+|++|||++|+||.+
T Consensus 81 a~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~isrGC~~~CsfC~~ 157 (440)
T PRK14334 81 AQLEEGQQMARKFGVDVLLGPGALTDIGKALEANER--FWGLQFKDELH-DHIPPPPQGKLSAHLTIMRGCNHHCTYCIV 157 (440)
T ss_pred hccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhcc--ccccccccccc-cccccccCCCeEEEEEeccCCCCCCcCCCc
Confidence 99985 3 4444 45679999999888888754311 00000001010 012222234578899999999999999999
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChh
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~ 289 (453)
|..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. .++.+|++.+.+ + +..++++.+.+|..++
T Consensus 158 p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~ 233 (440)
T PRK14334 158 PTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFT 233 (440)
T ss_pred chhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCC
Confidence 999999999999999999999999999999999999999987643 468899998864 3 5568999888999888
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 369 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~ 369 (453)
+++ +..|.+.+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.|++.+++|||+||||||++||++|++
T Consensus 234 ~el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~ 311 (440)
T PRK14334 234 DDV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLS 311 (440)
T ss_pred HHH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHH
Confidence 876 665656667899999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCCeeE
Q 012929 370 LIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRNVLF 434 (453)
Q Consensus 370 ~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~~~~ 434 (453)
|+.+++++.+++|.|+|+||||++ ++|.++|++++ .+.+. +++ |++.+||||+.+++++.++
T Consensus 312 ~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~--~~~-G~~~~vlve~~~~~~~~~~ 388 (440)
T PRK14334 312 LYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNA--RWV-GRTQEVLVRGDAKDAGFLE 388 (440)
T ss_pred HHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEeccCCCCeEE
Confidence 999999999999999999999998 79999999999 33333 777 9999999997543334688
Q ss_pred EecCCCeEEEEcCC
Q 012929 435 GMTKQFHLYLVVTH 448 (453)
Q Consensus 435 g~~~~y~~v~~~~~ 448 (453)
|||++|.+|.++.+
T Consensus 389 g~t~~~~~v~~~~~ 402 (440)
T PRK14334 389 GHTRGNHPVLVPAS 402 (440)
T ss_pred EECCCCcEEEEcCC
Confidence 99999999998743
No 24
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.1e-72 Score=576.91 Aligned_cols=367 Identities=26% Similarity=0.451 Sum_probs=313.0
Q ss_pred cChhHHHHHHHHHH-HcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhh---CCCCEEEEccccCCchh-h-hc
Q 012929 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQGSRD-L-KE 143 (453)
Q Consensus 70 ~N~~dse~~~~~L~-~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~---~~~~vVvgGc~a~~~~e-~-~~ 143 (453)
||++|||.|++.|. +.||++++++++||+++|||||||+.|++++++.|+++++ ++++|||+||+|+..++ + +.
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 5899999999999999999999999999999999998754 35679999999999885 4 36
Q ss_pred CCc-cEEEcCCChhHHHHHHHHHhcCCceeeccccCCCCCCCccccccceEEEEEeCCCCCCCccccccccccCccccCC
Q 012929 144 LEG-VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (453)
Q Consensus 144 ~~~-d~vvG~~~~~~l~~~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~ 222 (453)
++. |.|+|++++..+++++.... ..... .... ...+..+..+....+++|+||||||++|+||++|..+|+.|++|
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPK-AVEVD-IDYD-ESTYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhc-cccee-cccc-ccccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 664 57999999999999886531 11110 0000 00111112223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-----~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
+++|++|++.+++.|+++|+|+|+|++.||.+. ...|.+||+.+.+ ++ +..|+|+++++|..+++++ +..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 999999999999999999999999999998764 1358999999875 44 7789999989998888876 666
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
|++.+.+|+++|+|+||||+++|+.|||+++.+++.++++.+++..|++.+.+|||+||||||++||++|++|+++++++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 66666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCHhH-----------HHHHHHHHHHH----HHhhhhhcccCCeEEEEEEeeeeCCCCeeEEecCCCeE
Q 012929 378 QVHISQFYPRPGIQFL-----------NLDSTELLSLL----FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHL 442 (453)
Q Consensus 378 ~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~----~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~~~~y~~ 442 (453)
.+++|.|+|+||||++ ++|.++|.+++ .+.++ +++ |++.+||||+...+ +.+.|||++|.+
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~--~~v-G~~~~vlve~~~~~-~~~~g~t~~~~~ 388 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAK--KEV-GKTHVVLFEELRAN-GGVAGRSDNNKL 388 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhC-CCEEEEEEEEecCC-CeEEEECCCCeE
Confidence 9999999999999999 89999999999 33334 777 99999999975333 368899999999
Q ss_pred EEEcCC
Q 012929 443 YLVVTH 448 (453)
Q Consensus 443 v~~~~~ 448 (453)
|.++.+
T Consensus 389 v~~~~~ 394 (420)
T PRK14339 389 VQVKGS 394 (420)
T ss_pred EEECCC
Confidence 999753
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-58 Score=447.72 Aligned_cols=380 Identities=23% Similarity=0.388 Sum_probs=323.9
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhC----C----CCEE
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----K----KPLV 129 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~----~----~~vV 129 (453)
..|||++||||+||..|+|.+..+|.+.||-.++++++||+|+++||++++.||+++.+.++.+|+. + .+|.
T Consensus 72 gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rpl~v~ 151 (552)
T KOG2492|consen 72 GRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRPLRVG 151 (552)
T ss_pred CcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCCceEE
Confidence 4789999999999999999999999999999999999999999999999999999999988765432 1 2588
Q ss_pred EEccccCCchh-h-h-cCCccEEEcCCChhHHHHHHHHHhcCCcee---eccccCCCCCCCcc-ccccceEEEEEeCCCC
Q 012929 130 VAGCVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVR---LLHRKKLPALDLPK-VRRNKFVEILPINVGC 202 (453)
Q Consensus 130 vgGc~a~~~~e-~-~-~~~~d~vvG~~~~~~l~~~l~~~~~g~~~~---~~~~~~~~~~~~p~-~~~~~~~~~i~isrGC 202 (453)
|-||||+...+ + . +--.|.|.|+..+..+|.+|.-...|.... +.-.+.+.+.. |. .......|||.|+|||
T Consensus 152 vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~-pvr~~~~s~tAFvSiMRGC 230 (552)
T KOG2492|consen 152 VLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQ-PVRVSSSSTTAFVSIMRGC 230 (552)
T ss_pred eehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccc-eeeccCccchhHHHHHhcc
Confidence 89999998886 2 2 223567889999999999987666554321 11111122211 22 2345678899999999
Q ss_pred CCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------------------------CC
Q 012929 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------------------------GV 257 (453)
Q Consensus 203 ~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-------------------------~~ 257 (453)
++-|+||++|+.+|+.|+||++.|++|++.|.++|++++.|+|||+++|..+. +.
T Consensus 231 dNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~gGl 310 (552)
T KOG2492|consen 231 DNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQGGL 310 (552)
T ss_pred ccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCCCc
Confidence 99999999999999999999999999999999999999999999999995421 23
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHH
Q 012929 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337 (453)
Q Consensus 258 ~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~ 337 (453)
.|+.||+.+....| ..++||.+-||.++.+++ |..+...+..|+.+|+|.||||.++|+.|.|+|+.+.|.+.+.
T Consensus 311 ~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdev--l~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~ 385 (552)
T KOG2492|consen 311 RFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEV--LELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVA 385 (552)
T ss_pred cHHHHHHHHhhhCc---ceEEEecCCCCCCChHHH--HHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhHHH
Confidence 79999999988764 568888888999999887 5556677889999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH------------HHHHHHHHHHH-
Q 012929 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL------------NLDSTELLSLL- 404 (453)
Q Consensus 338 ~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~------------~~R~~~l~~~~- 404 (453)
.++..+||+.+..|||.||-|||++|++.|+.++++.+.+.+..|.|+-+.+|.+| .+|..+|..++
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li~~Fr 465 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITFFR 465 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 67777888777
Q ss_pred ---HHhhhhhcccCCeEEEEEEeeeeCCCC-eeEEecCCCeEEEEc
Q 012929 405 ---FSNYKFTVMLISILVKLHYFSLDDQRN-VLFGMTKQFHLYLVV 446 (453)
Q Consensus 405 ---~~~~~~~~~~~G~~~~vlve~~~~~~~-~~~g~~~~y~~v~~~ 446 (453)
...+. .++ |.++.||+|++++... .+.|+++.|..|.|+
T Consensus 466 e~A~~~~d--~lv-gc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~ 508 (552)
T KOG2492|consen 466 EEAIKFND--GLV-GCTQLVLVEGKSKRSATDLCGRNDGNLKVIFP 508 (552)
T ss_pred HHHHHHhc--cCc-cccceeeeechhhhhHHHHhcccCCCeEEEec
Confidence 33444 777 9999999999864322 578999999999987
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=1.8e-38 Score=334.62 Aligned_cols=306 Identities=18% Similarity=0.230 Sum_probs=227.5
Q ss_pred ChhHHHHHHHHHHHcC-Cee--eCC---------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEE
Q 012929 71 NQSDSEYMAGQLSAFG-YAL--TDN---------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVV 130 (453)
Q Consensus 71 N~~dse~~~~~L~~~g-~~~--~~~---------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vVv 130 (453)
--.--.++++.|++.| +++ +|. ...+|+|+| ||.. +....++++++.+|+. +.+||+
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgi-s~~t--~~~~~a~~~~~~~k~~~P~~~iV~ 97 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLI-TAIT--PAIYIACETLKFARERLPNAIIVL 97 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEE-ecCc--ccHHHHHHHHHHHHHHCCCCEEEE
Confidence 3445678899999999 443 221 135899999 4442 2334567777777765 678999
Q ss_pred EccccCCchh--hhcCC-ccE-EEcCCChhHHHHHHHHHhcCC---cee-----ec-------cccC---CCCCC-C-cc
Q 012929 131 AGCVPQGSRD--LKELE-GVS-IVGVQQIDRVVEVVEETLKGH---EVR-----LL-------HRKK---LPALD-L-PK 186 (453)
Q Consensus 131 gGc~a~~~~e--~~~~~-~d~-vvG~~~~~~l~~~l~~~~~g~---~~~-----~~-------~~~~---~~~~~-~-p~ 186 (453)
||+|++..|+ +...+ .|. |+|++| ..++++++....|. ... .+ ...+ ...++ + |.
T Consensus 98 GG~h~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~ 176 (497)
T TIGR02026 98 GGIHPTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPD 176 (497)
T ss_pred cCCCcCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCC
Confidence 9999999986 33444 575 779988 58999998876664 110 00 0000 11111 1 11
Q ss_pred --------cc--c-cceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCC
Q 012929 187 --------VR--R-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRD 254 (453)
Q Consensus 187 --------~~--~-~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~-~G~~eI~l~~~d~~~yg~d 254 (453)
+. . ....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|++.|.|.|++++.. .
T Consensus 177 ~~l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~-~- 254 (497)
T TIGR02026 177 WELVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTIN-R- 254 (497)
T ss_pred cccCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccC-H-
Confidence 00 0 1234568999999999999999887788999999999999999986 5999999999887653 1
Q ss_pred cCCCHHHHHHHHHHhCCCCCCceEEEEecCCcCh--hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHH
Q 012929 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332 (453)
Q Consensus 255 ~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i--~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~ 332 (453)
..+.+++++|.+.-+ .+..|. .++.++.+ ++++ +. +++. .+|.++.+|+||+|+++|+.|+|+++.+++
T Consensus 255 --~~~~~l~~~l~~~~~-l~i~w~--~~~r~~~i~~d~el--l~-~l~~-aG~~~v~iGiES~~~~~L~~~~K~~t~~~~ 325 (497)
T TIGR02026 255 --KKFQEFCEEIIARNP-ISVTWG--INTRVTDIVRDADI--LH-LYRR-AGLVHISLGTEAAAQATLDHFRKGTTTSTN 325 (497)
T ss_pred --HHHHHHHHHHHhcCC-CCeEEE--EecccccccCCHHH--HH-HHHH-hCCcEEEEccccCCHHHHHHhcCCCCHHHH
Confidence 356788888876411 022222 23444444 3333 33 4432 578999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 333 ~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.++++.++++ ||.+.++||+|+||||.+++++|++++.+++++.++++.++|+||||++
T Consensus 326 ~~ai~~l~~~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~ 384 (497)
T TIGR02026 326 KEAIRLLRQH--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLF 384 (497)
T ss_pred HHHHHHHHHC--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=5.5e-37 Score=322.07 Aligned_cols=280 Identities=19% Similarity=0.236 Sum_probs=205.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEccccCCchh--hhcCC-ccE-EEcCCChhHHHHHHHHHh-
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKELE-GVS-IVGVQQIDRVVEVVEETL- 166 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vVvgGc~a~~~~e--~~~~~-~d~-vvG~~~~~~l~~~l~~~~- 166 (453)
.++|+|+|+|+|.... .+.++++.+|+. +.+||+||+|++..|+ +...+ .|. |.|+++. .++++++...
T Consensus 67 ~~~Dlv~is~~t~~~~---~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~-~l~~l~~g~~~ 142 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFP---SDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDY-TIKEVAEGKPL 142 (472)
T ss_pred cCCCEEEEECCCcchH---HHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHH-HHHHHHcCCCh
Confidence 3689999987766543 456667777765 5789999999999997 33333 565 6788874 6887765311
Q ss_pred ---c--------CCcee--------eccccCCCC----CCCcc--cc---ccceEEEEEeCCCCCCCcccccccccc-C-
Q 012929 167 ---K--------GHEVR--------LLHRKKLPA----LDLPK--VR---RNKFVEILPINVGCLGACTYCKTKHAR-G- 216 (453)
Q Consensus 167 ---~--------g~~~~--------~~~~~~~~~----~~~p~--~~---~~~~~~~i~isrGC~~~CsFC~~~~~r-g- 216 (453)
. |.... .++..++|+ .+++. +. .....+.|++|||||++|+||.++... |
T Consensus 143 ~~i~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~ 222 (472)
T TIGR03471 143 AEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 (472)
T ss_pred hcCCceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCC
Confidence 0 10000 000111110 00100 00 012345789999999999999987543 4
Q ss_pred ccccCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHH
Q 012929 217 HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (453)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~--G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~ 294 (453)
++|.++++.|++||+.+.+. |++.|.|.|++++.. . ..+.+|++.+.+ . +..|.... .. .+++++
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-~---~~~~~l~~~l~~-~---~i~~~~~~--~~-~~~~e~-- 289 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-K---PRAEEIARKLGP-L---GVTWSCNA--RA-NVDYET-- 289 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-H---HHHHHHHHHHhh-c---CceEEEEe--cC-CCCHHH--
Confidence 58999999999999999876 889999988776532 1 345677777754 2 44443222 22 345544
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+..|.+ .+|.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.++
T Consensus 290 l~~l~~--aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 290 LKVMKE--NGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHH--cCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 444444 5789999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCCHhHH
Q 012929 375 KFPQVHISQFYPRPGIQFLN 394 (453)
Q Consensus 375 ~~~~i~i~~~sp~pGT~~~~ 394 (453)
+++.++++.++|+|||++++
T Consensus 366 ~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 366 NPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred CCCceeeeecccCCCcHHHH
Confidence 99999999999999999984
No 28
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-36 Score=314.91 Aligned_cols=195 Identities=19% Similarity=0.318 Sum_probs=158.6
Q ss_pred eEEEEEeCCCCCCCccccccccccCcc-ccCCHHHHHHHHHHHHHC-CCcEEE--EeecCCCCCCCCc------------
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRDI------------ 255 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~-rsr~~e~Iv~Ei~~l~~~-G~~eI~--l~~~d~~~yg~d~------------ 255 (453)
...+|+|+|||+++|+||+++..+|+. +|||+++|++|++.+.+. |+++++ +.|++.+.||.+-
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 457899999999999999999999985 999999999999999988 888875 5678899997420
Q ss_pred --------------CCCHHHHHHHHHHhCCCCCCceEEEEe-cCCcCh----hHHHHHHHHHHhCCCCceeeecccCCCC
Q 012929 256 --------------GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGS 316 (453)
Q Consensus 256 --------------~~~l~~Ll~~l~~~i~~~~~~~ir~~~-~~p~~i----~~~l~~l~~l~~~~~~~~~l~iglESgs 316 (453)
...+.+||++|.+ ++ ++.|+++++ +..+.+ .+.+ +.++..+ .++.+|+||+||+|
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~--l~eL~~~-~vsg~L~IapESgS 445 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEF--FEELCEH-HVSGQLKVAPEHIS 445 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHH--HHHHHHH-hcCCCceeCcCCCC
Confidence 1258899999975 66 777877776 344332 1112 3344443 45678999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhCCC----cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 317 DAVLSAMNREYTLSDFRTVVDTLIELVPG----MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 317 ~~vLk~m~R~~t~e~~~~~i~~lr~~~pg----i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
+++|+.|+|+ +.+.+.+.++.+++..+. ..+.++||+||||||++||++|++|+++++++.++++.|+|+|||++
T Consensus 446 d~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~A 524 (620)
T PRK00955 446 DRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLS 524 (620)
T ss_pred hHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcch
Confidence 9999999998 667777776666555443 35999999999999999999999999999999999999999999999
Q ss_pred H
Q 012929 393 L 393 (453)
Q Consensus 393 ~ 393 (453)
+
T Consensus 525 t 525 (620)
T PRK00955 525 T 525 (620)
T ss_pred h
Confidence 8
No 29
>PRK01254 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=302.50 Aligned_cols=196 Identities=20% Similarity=0.343 Sum_probs=174.9
Q ss_pred eEEEEEeCCCCCCCccccccccccCc-cccCCHHHHHHHHHHHHHC--CCcEEE--EeecCCCCCCC---C---------
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 254 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~Ei~~l~~~--G~~eI~--l~~~d~~~yg~---d--------- 254 (453)
..++|+|+|||+++|+||+++..+|+ ++|||+++|++|++.+.+. |+++++ ++|+|.+.||. +
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 34789999999999999999999999 7999999999999999974 999999 99999999996 2
Q ss_pred -----------cC---CCHHHHHHHHHHhCCCCCCceEEEEecCCcChh---HHHHHHHHHHhCCCCceeeecccCCCCH
Q 012929 255 -----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL---EHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (453)
Q Consensus 255 -----------~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~---~~l~~l~~l~~~~~~~~~l~iglESgs~ 317 (453)
.. ..+.+||++|.+ ++ ++.++++.+..+..+. +++ +..+.+ ..++.+|+||+||+|+
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~el--Ieel~~-~hV~g~LkVppEH~Sd 525 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRY--VKELVT-HHVGGYLKIAPEHTEE 525 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHH--HHHHHH-hCCccccccccccCCH
Confidence 11 258999999975 66 8889999998887764 333 444545 4788899999999999
Q ss_pred HHHHhhcCC--CCHHHHHHHHHHHHHhCC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCC---CCH
Q 012929 318 AVLSAMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQ 391 (453)
Q Consensus 318 ~vLk~m~R~--~t~e~~~~~i~~lr~~~p-gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~p---GT~ 391 (453)
++|+.|+|+ ++.+++.+.++++++..| ++.+.++||+||||||++||+++++|++++++..-++..|+|.| ||.
T Consensus 526 ~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~ 605 (707)
T PRK01254 526 GPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATT 605 (707)
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchH
Confidence 999999998 789999999999999987 69999999999999999999999999999999999999999999 888
Q ss_pred hH
Q 012929 392 FL 393 (453)
Q Consensus 392 ~~ 393 (453)
||
T Consensus 606 MY 607 (707)
T PRK01254 606 MY 607 (707)
T ss_pred HH
Confidence 88
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=99.97 E-value=1.3e-29 Score=248.83 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=163.2
Q ss_pred cceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
....+||.+|+||+++|+||+++..+| +++++++|+++++.+.+.|+++|+|+++|.+.+.......+.+|++.|.+.
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~ 128 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIREL 128 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhh
Confidence 356789999999999999999998765 789999999999999999999999999986543210113688999999875
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~ 349 (453)
++ +. ++++.+.++....+. +..+++. ++..+....++ ++++|+.|+|+++.+++.++++.+++.+||+.+.
T Consensus 129 ~p--~i-rI~~l~~~~~~~~e~---L~~l~~a--g~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~ 199 (289)
T PRK05481 129 NP--GT-TIEVLIPDFRGRMDA---LLTVLDA--RPDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPTK 199 (289)
T ss_pred CC--Cc-EEEEEccCCCCCHHH---HHHHHhc--CcceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 54 33 455554444433444 4444442 33445555666 5899999999999999999999999999999999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC---HhH----HHHHHHHHHHH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QFL----NLDSTELLSLL 404 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT---~~~----~~R~~~l~~~~ 404 (453)
++||+|| |||+|||.+|++++++++++.+++|+|+| |.- +.- ++|.++|++++
T Consensus 200 t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~-pa~k~~~v~~~~k~~r~~~l~~~~ 259 (289)
T PRK05481 200 SGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ-PSRKHLPVERYVTPEEFDEYKEIA 259 (289)
T ss_pred eeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC-CccccCCCCCcCCHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999 333 222 89999999998
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.96 E-value=2.5e-27 Score=249.32 Aligned_cols=289 Identities=22% Similarity=0.325 Sum_probs=201.9
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEccccCCchh-hhc-CCccE-EEcCCChhHHHHHHHHHhcCC
Q 012929 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD-LKE-LEGVS-IVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 95 ~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vVvgGc~a~~~~e-~~~-~~~d~-vvG~~~~~~l~~~l~~~~~g~ 169 (453)
.++.+.+..+.- .. .......+...+.. ++.|++||.+++..++ +.. .+.|. ++|+++. .++++++....+.
T Consensus 72 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~GG~~~t~~~~~~~~~~~~D~iv~GeGE~-~~~~~~~~~~~~~ 148 (490)
T COG1032 72 RADLIGVSDPLG-GL-RPDALKLVAKARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGEE-TLPELLEALEEGE 148 (490)
T ss_pred cceeEEEecccc-hh-chhhhHHHHHHhcccCCCeEEecCCCcCCCcHHHHhhcCCCEEEEcCchH-HHHHHHHHHhccc
Confidence 455666643332 11 12334444444433 2458999999999885 433 33464 8899884 7888888766543
Q ss_pred ce--------e----e-c----cccCCCCCCC---------ccccc-cceEEEEEeCCCCCCCccccccccccCccccCC
Q 012929 170 EV--------R----L-L----HRKKLPALDL---------PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (453)
Q Consensus 170 ~~--------~----~-~----~~~~~~~~~~---------p~~~~-~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~ 222 (453)
.. + . . +..+.+..++ |.... ......|+++||||++|+||.++... ++|+++
T Consensus 149 ~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~ 227 (490)
T COG1032 149 DDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRR 227 (490)
T ss_pred cccccCccccCChhhcccccccccCCccceeecccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCC
Confidence 21 0 0 0 1111222211 21111 23357899999999999999998766 799999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCCCCCCceEEEE--ecCCcChhHHHHHHHH
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIG--MTNPPFILEHLKEIAE 297 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~--~~~p~~i~~~l~~l~~ 297 (453)
++++++|++.+++.|.+.+.+..+|.+.|+... ...+..+...+.+... .+...+.+. .+.++.+++. ++..
T Consensus 228 ~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~~--~~~~ 304 (490)
T COG1032 228 PERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERGL-RKGCRVHISAPSLRADTVTDE--ELLK 304 (490)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHhc-ccCceeeeeccccCchhcCHH--HHHH
Confidence 999999999999999999887777888887752 2233333333433211 022233333 2455556522 2444
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHH-HHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHH---HHHHHh
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT-VVDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKE 373 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~-~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~t---l~~i~~ 373 (453)
+++. .++..+.+|+||||+++|+.|+|+++.++..+ +++.++++ ++.+..++|+|+||||.+|+.+| ++++++
T Consensus 305 ~~~~-~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~ 381 (490)
T COG1032 305 LLRE-AGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKK 381 (490)
T ss_pred HHhh-CCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4443 44789999999999999999999999999995 99999999 99999999999999999999999 788888
Q ss_pred cCCC-eEEEEecccCCCCHhH
Q 012929 374 YKFP-QVHISQFYPRPGIQFL 393 (453)
Q Consensus 374 l~~~-~i~i~~~sp~pGT~~~ 393 (453)
++.. .+.++.|+|.|||+++
T Consensus 382 ~~~~~~~~~~~~~p~p~t~~~ 402 (490)
T COG1032 382 LGPKLYVSPSPFVPLPGTPLQ 402 (490)
T ss_pred hCccceEEEeeeeCCCCCchh
Confidence 8885 8999999999999999
No 32
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.94 E-value=5e-27 Score=192.94 Aligned_cols=92 Identities=42% Similarity=0.683 Sum_probs=83.9
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccccC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a~ 136 (453)
||||+||||++|++|||.|++.|.+.||++++++++||+++||||+|+++|++++++.|+++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 799999999999999999999999999999999999999999999999999999999999887755 78999999999
Q ss_pred Cchh-hh-cCC-ccEEEc
Q 012929 137 GSRD-LK-ELE-GVSIVG 151 (453)
Q Consensus 137 ~~~e-~~-~~~-~d~vvG 151 (453)
..++ +. ..+ .|.|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 9996 44 445 466877
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.94 E-value=1.1e-25 Score=225.64 Aligned_cols=186 Identities=15% Similarity=0.269 Sum_probs=152.3
Q ss_pred eEEEEEeCCCCCCCccccccccccCc-ccc-CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~-~rs-r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
..+.|++|+||+++|+||..+...+. .+. .++++|+++++.+.+.|++.|.|++.+...+.. ..+.++++.+.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc
Confidence 35689999999999999999876554 343 499999999999999999999999765333322 3567777777653
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~ 349 (453)
. + ..+.++ ...++++. +..+.+ .++..+.+|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 -~--~-l~i~~~---~g~~~~e~--l~~Lk~--aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 -L--D-VAITLS---LGERSYEE--YKAWKE--AGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred -C--C-ceEEEe---cCCCCHHH--HHHHHH--cCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 1 2 223332 22334433 444444 4678999999999999999999999999999999999999 99999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||++
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~ 226 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLK 226 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcc
Confidence 99999999999999999999999999999999999999999998
No 34
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.93 E-value=2.9e-24 Score=211.06 Aligned_cols=191 Identities=20% Similarity=0.304 Sum_probs=156.1
Q ss_pred cceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~ 268 (453)
....+|+.+++||+.+|+||+++..+|+.++ ++++++++++.+.+.|+++|+|+++|...+. |.+ ..+.+++++|.+
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 4567899999999999999999988887766 5799999999999999999999998776553 222 468999999977
Q ss_pred hCCCCCCceEEEEecCCcCh-hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 269 ELPPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
..+ + ..+++ +.|+.. ... .+..++. .++..+...+|+. +++++.|+|+++.++++++++.+++..||+.
T Consensus 139 ~~p--~-i~Iev--l~~d~~g~~e--~l~~l~~--aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~ 208 (302)
T TIGR00510 139 KLP--N-IKIET--LVPDFRGNIA--ALDILLD--APPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLP 208 (302)
T ss_pred cCC--C-CEEEE--eCCcccCCHH--HHHHHHH--cCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 544 2 23444 444321 222 2444444 3456677889977 8899999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecc-c-CCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-P-RPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~s-p-~pGT~~~ 393 (453)
+.++||+|| |||+||+.++++++++++++.+.+++|. | .+++|+.
T Consensus 209 ~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~ 255 (302)
T TIGR00510 209 TKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVK 255 (302)
T ss_pred ecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccc
Confidence 999999999 9999999999999999999999999987 5 6788886
No 35
>PRK12928 lipoyl synthase; Provisional
Probab=99.93 E-value=2.1e-24 Score=211.54 Aligned_cols=192 Identities=18% Similarity=0.262 Sum_probs=152.6
Q ss_pred cceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~ 268 (453)
....+|+.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|++++.+...+. +.+ ..+.+++++|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 356789999999999999999987 6677899999999999999999999999987653321 111 357899999876
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
..+ .+++..+.|+.+....+.+..+... ++..+..++|| ++++++.|+|+++.++++++++.+++..|++.+
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~A--g~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAA--KPDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHc--CchhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 433 3355556665432111225555543 23445555786 699999999999999999999999999777999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc--CCCCHhH
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGIQFL 393 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp--~pGT~~~ 393 (453)
.++||+|| |||++|+.++++++++++++.+++|+|++ ....|..
T Consensus 207 ~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~ 252 (290)
T PRK12928 207 KSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQ 252 (290)
T ss_pred cccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCcee
Confidence 99999999 99999999999999999999999999987 5555554
No 36
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=3.2e-24 Score=219.34 Aligned_cols=190 Identities=20% Similarity=0.328 Sum_probs=153.6
Q ss_pred EEEEEeCCCCCCCccccccccc--cCccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
..||.|.- |+.+|+||.++.. .+..+.+.++.+++|++.+... +++.|.|.|.+.+.... ..+.++++.+.
T Consensus 3 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~---~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSA---EQLERLLTAIH 78 (377)
T ss_pred eEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCH---HHHHHHHHHHH
Confidence 35777776 9999999998753 4455677899999999776554 46667776655443322 36788888887
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
+.++..+...+.+. ++|..++++. +..+.+ .+++++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.
T Consensus 79 ~~~~~~~~~eit~e-~~p~~l~~e~--l~~l~~--~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~~ 151 (377)
T PRK08599 79 RNLPLSGLEEFTFE-ANPGDLTKEK--LQVLKD--SGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GFD 151 (377)
T ss_pred HhCCCCCCCEEEEE-eCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCC
Confidence 75431122345554 7999888765 554444 4679999999999999999999999999999999999999 876
Q ss_pred -EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 -v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
++.|+|+|+||||.+++.++++++.+++++++.+++++|.|||+++
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 152 NISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred cEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 8899999999999999999999999999999999999999999998
No 37
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=2.8e-24 Score=217.00 Aligned_cols=180 Identities=19% Similarity=0.298 Sum_probs=145.6
Q ss_pred CCCCccccccccccC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCc
Q 012929 202 CLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (453)
Q Consensus 202 C~~~CsFC~~~~~rg-----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~ 276 (453)
|+.+|.||.+....+ ++..+..+++..|++.+....++.|.|.|.+.+.... ..+.+|++.+.+.++ ...
T Consensus 16 C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~---~~l~~ll~~i~~~~~--~~~ 90 (353)
T PRK05904 16 CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLND---QLLDILLSTIKPYVD--NNC 90 (353)
T ss_pred ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCH---HHHHHHHHHHHHhcC--CCC
Confidence 999999999875422 2334455666666665433457788887766655432 356778887776554 445
Q ss_pred eEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EEEEEEEe
Q 012929 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIICG 355 (453)
Q Consensus 277 ~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~~~~IvG 355 (453)
.+.+. ++|..++++. +..+.+ .++++|++|+||+++++|+.|+|+++.+++.++++.++++ |+. ++.|||+|
T Consensus 91 eitiE-~nP~~lt~e~--l~~lk~--~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~~~v~~dlI~G 163 (353)
T PRK05904 91 EFTIE-CNPELITQSQ--INLLKK--NKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYNISCDFLYC 163 (353)
T ss_pred eEEEE-eccCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEEEEEeec
Confidence 67776 7999998765 554444 3689999999999999999999999999999999999999 876 99999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+||||.++++++++++.+++++++.++.|+++|||+++
T Consensus 164 lPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~ 201 (353)
T PRK05904 164 LPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILK 201 (353)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHh
Confidence 99999999999999999999999999999999999998
No 38
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=2.6e-23 Score=216.70 Aligned_cols=192 Identities=16% Similarity=0.244 Sum_probs=155.7
Q ss_pred eEEEEEeCCCCCCCccccccccc--cCccccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~Ei~~l~~~------G~~eI~l~~~d~~~yg~d~~~~l~~Ll 263 (453)
...||.|-- |+++|+||.+... .+..+.+.++.+++||+...+. .++.|.|.|.+.+.... ..+.+|+
T Consensus 62 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~ll 137 (449)
T PRK09058 62 RLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARLI 137 (449)
T ss_pred eEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHHH
Confidence 345666655 9999999997643 2335667899999999986642 46677777766554432 3677888
Q ss_pred HHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
+.+.+.++......+.+. .+|..++++. +..+.+ .+|++|+||+||+++++|+.|+|.++.+++.++++.+++.
T Consensus 138 ~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~~l~~--aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~- 211 (449)
T PRK09058 138 TALREYLPLAPDCEITLE-GRINGFDDEK--ADAALD--AGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR- 211 (449)
T ss_pred HHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HHHHHH--cCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC-
Confidence 888776542234456666 7898888765 554444 5789999999999999999999999999999999999999
Q ss_pred CC-cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhHH
Q 012929 344 PG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394 (453)
Q Consensus 344 pg-i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~~ 394 (453)
| +.++.|+|+|+||||.++++++++++.+++++++.++.|+++|||++++
T Consensus 212 -g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~ 262 (449)
T PRK09058 212 -DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAK 262 (449)
T ss_pred -CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHH
Confidence 8 7899999999999999999999999999999999999999999999983
No 39
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.91 E-value=4.8e-23 Score=210.48 Aligned_cols=188 Identities=19% Similarity=0.305 Sum_probs=148.2
Q ss_pred EEEeCCCCCCCccccccccccC-ccc-cCC----HHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHARG-HLG-SYT----VESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 262 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg-~~r-sr~----~e~Iv~Ei~~l~~~------G~~eI~l~~~d~~~yg~d~~~~l~~L 262 (453)
||.|- =|+.+|+||.++...+ +.+ +.+ ++.+.+||+...+. .++.|.|.|.+.+.... ..+.+|
T Consensus 6 YiHiP-FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~l 81 (375)
T PRK05628 6 YVHVP-FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLARV 81 (375)
T ss_pred EEEeC-CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHHHH
Confidence 44443 2999999999865432 322 233 78888999876543 36778887766655433 367888
Q ss_pred HHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 012929 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 263 l~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~ 342 (453)
++.+.+.+.......+.+. ++|..++++. +..+.+ .+|++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 82 l~~i~~~~~~~~~~e~t~e-~~p~~i~~e~--l~~l~~--~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~ 156 (375)
T PRK05628 82 LDAVRDTFGLAPGAEVTTE-ANPESTSPEF--FAALRA--AGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA 156 (375)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 8888765421122334443 7899888765 554444 4689999999999999999999999999999999999999
Q ss_pred CCCcE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 343 ~pgi~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+. ++.|||+|+||||.++|.+|++++.+++++++.++.+++.|||+++
T Consensus 157 --g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 157 --GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred --CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 987 9999999999999999999999999999999999999999999998
No 40
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.91 E-value=4.1e-23 Score=204.51 Aligned_cols=190 Identities=15% Similarity=0.304 Sum_probs=144.3
Q ss_pred EEEEeCCCCCCC--------ccccccccccCccc---cCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCC
Q 012929 194 EILPINVGCLGA--------CTYCKTKHARGHLG---SYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVN 258 (453)
Q Consensus 194 ~~i~isrGC~~~--------CsFC~~~~~rg~~r---sr~~e~Iv~Ei~~l~~~----G~~eI~l~~~d~~~yg~d~~~~ 258 (453)
..|...-+||++ |+||.... .++++ .+|.++|.++++...+. +...+.|.|.+ ++|... ..
T Consensus 20 ~~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt-~t~l~~--~~ 95 (302)
T TIGR01212 20 ITLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT-NTYAPV--EV 95 (302)
T ss_pred eecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-cCCCCH--HH
Confidence 345667789994 99998743 34555 45666676666655443 22225555544 333221 35
Q ss_pred HHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCc-eeeecccCCCCHHHHHhhcCCCCHHHHHHHHH
Q 012929 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337 (453)
Q Consensus 259 l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~-~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~ 337 (453)
+.++++.+.+ .+ ....+.++ ++|+.++++..++.+.+. ..++ .++++|+||+++++|+.|+|+++.+++.++++
T Consensus 96 L~~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~-~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~ 170 (302)
T TIGR01212 96 LKEMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYV-ERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVK 170 (302)
T ss_pred HHHHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhh-hCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHH
Confidence 6777777765 44 44556665 689988876522222222 2356 68999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhHH
Q 012929 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394 (453)
Q Consensus 338 ~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~~ 394 (453)
.++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++|+|.|||++++
T Consensus 171 ~l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~ 225 (302)
T TIGR01212 171 RARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAK 225 (302)
T ss_pred HHHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHH
Confidence 99999 99999999999999999999999999999999999999999999999993
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=2.8e-23 Score=212.26 Aligned_cols=188 Identities=20% Similarity=0.307 Sum_probs=147.3
Q ss_pred EEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.||.|-- |+++|+||.++...++ .+...++.|++|++.+... +++.|.|.|.+.+.... ..+..|++.+.. +
T Consensus 6 lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~-~ 80 (374)
T PRK05799 6 LYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK-L 80 (374)
T ss_pred EEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh-C
Confidence 3455544 9999999999876554 3344689999999876433 57778877755443322 234456666643 3
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EE
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~ 349 (453)
.......+.+. ++|..++++. +..+.+ .+++++++|+||+++++|+.|+|+++.+++.++++.++++ |+. ++
T Consensus 81 ~~~~~~eitie-~~p~~~t~e~--l~~l~~--~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~v~ 153 (374)
T PRK05799 81 NKKEDLEFTVE-GNPGTFTEEK--LKILKS--MGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNNIN 153 (374)
T ss_pred CCCCCCEEEEE-eCCCcCCHHH--HHHHHH--cCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEE
Confidence 21122344444 7899888765 554444 3579999999999999999999999999999999999999 885 89
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.|+|+|+||||.+++.++++++.+++++++.++.++|.||||++
T Consensus 154 ~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 197 (374)
T PRK05799 154 VDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFY 197 (374)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHH
Confidence 99999999999999999999999999999999999999999998
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=1.6e-23 Score=211.90 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=148.9
Q ss_pred CCCCcccccccccc-C-ccccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC
Q 012929 202 CLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (453)
Q Consensus 202 C~~~CsFC~~~~~r-g-~~rsr~~e~Iv~Ei~~l~~----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (453)
|+.+|.||.++... + ..+.+.++.+++||+...+ .+++.|.|.|.+.+.... ..+.+|++.+.+.+. ..
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~--~~ 84 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLS--KD 84 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcC--CC
Confidence 99999999987542 2 2455688999999997643 267888888766655432 346777777765433 34
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EEEEEEE
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDIIC 354 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~~~~Iv 354 (453)
..+.+. ++|..++++. +..+.+ .++++|++|+||+++++|+.|+|.++.+++.++++.++++ |+. ++.|+|+
T Consensus 85 ~eitiE-~nP~~~~~e~--l~~l~~--~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~v~iDli~ 157 (350)
T PRK08446 85 CEITTE-ANPNSATKAW--LKGMKN--LGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFENISIDLIY 157 (350)
T ss_pred ceEEEE-eCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCEEEEEeec
Confidence 556665 7899888765 554444 4679999999999999999999999999999999999999 984 8999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhHH
Q 012929 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394 (453)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~~ 394 (453)
|+||||.+++.++++++.+++++++.++.|++.||||+++
T Consensus 158 GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~ 197 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFE 197 (350)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHH
Confidence 9999999999999999999999999999999999999994
No 43
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.90 E-value=9e-23 Score=202.85 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=145.1
Q ss_pred eEEEEEeCCCCCC----CccccccccccCccccCCHHHHHHHHHHHHHC-CCcE----E-EEeecCCCCCCCCcCCCHHH
Q 012929 192 FVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLPI 261 (453)
Q Consensus 192 ~~~~i~isrGC~~----~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~e----I-~l~~~d~~~yg~d~~~~l~~ 261 (453)
....|..|||||+ +|+||.... +.++.++++.|+++++.+.+. +.+. + .|++..+.....-....+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~ 92 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNY 92 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHH
Confidence 4456899999999 599997653 345678999999999998865 4331 2 24443332211000123456
Q ss_pred HHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCce-eeecccCCCCHHHHH-hhcCCCCHHHHHHHHHHH
Q 012929 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDTL 339 (453)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~-~l~iglESgs~~vLk-~m~R~~t~e~~~~~i~~l 339 (453)
+++.+.+ .+ ...++.+. ++|+.++++. |..+.+ .+|+ .|.+|+||+|+++|+ .|||+++.+++.++++.+
T Consensus 93 i~~~l~~-~~--~~~~i~~e-srpd~i~~e~--L~~l~~--aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~ 164 (313)
T TIGR01210 93 IFEKIAQ-RD--NLKEVVVE-SRPEFIDEEK--LEELRK--IGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELA 164 (313)
T ss_pred HHHHHHh-cC--CcceEEEE-eCCCcCCHHH--HHHHHH--cCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 7777755 22 24466665 6898888765 655554 3677 799999999999995 899999999999999999
Q ss_pred HHhCCCcEEEEEEEEeCCC----CCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 340 IELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 340 r~~~pgi~v~~~~IvG~Pg----ET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+++ |+.+.++||+|+|+ |+.+++.+|++++..++ +++.+++++|.|||+++
T Consensus 165 ~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 165 RKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVE 219 (313)
T ss_pred HHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHH
Confidence 999 99999999999996 56688889999999999 99999999999999887
No 44
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=6.5e-23 Score=210.78 Aligned_cols=182 Identities=17% Similarity=0.247 Sum_probs=146.7
Q ss_pred CCCCccccccccc-cCc-ccc-------CCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 202 CLGACTYCKTKHA-RGH-LGS-------YTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 202 C~~~CsFC~~~~~-rg~-~rs-------r~~e~Iv~Ei~~l~~~--G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
|+.+|.||.++.. .|+ .+. .-.+.+++||+..... +++.|.|.|.+.+.... ..+.++++.+.+.+
T Consensus 20 C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~~ll~~i~~~~ 96 (400)
T PRK07379 20 CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLERILTTLDQRF 96 (400)
T ss_pred ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhC
Confidence 9999999999743 121 211 1356788888865432 57888887766655432 36778888887655
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EE
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~ 349 (453)
+......+++. ++|..++++. +..+.+ .++++|++|+||+++++|+.|+|+++.+++.++++.++++ |+. ++
T Consensus 97 ~~~~~~eit~E-~~P~~lt~e~--l~~l~~--~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--G~~~v~ 169 (400)
T PRK07379 97 GIAPDAEISLE-IDPGTFDLEQ--LQGYRS--LGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA--GIENFS 169 (400)
T ss_pred CCCCCCEEEEE-eCCCcCCHHH--HHHHHH--CCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCCeEE
Confidence 32233466766 7999888765 554444 4679999999999999999999999999999999999999 987 99
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.|+|+|+||||.+++.+|++++.+++++++.++.|+|.|||+++
T Consensus 170 ~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~ 213 (400)
T PRK07379 170 LDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFG 213 (400)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhH
Confidence 99999999999999999999999999999999999999999998
No 45
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.3e-22 Score=212.27 Aligned_cols=193 Identities=19% Similarity=0.286 Sum_probs=152.4
Q ss_pred ceEEEEEeCCCCCCCccccccccc--cC-c-cccCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcCCCHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHA--RG-H-LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~--rg-~-~rsr~~e~Iv~Ei~~l~~------~G~~eI~l~~~d~~~yg~d~~~~l~ 260 (453)
....||.|- -||.+|.||.++.. .+ + .....++.+++|++.+.+ .++..|.|.|.+.+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 344456654 49999999998754 12 1 222357888999987642 156678887766554432 3578
Q ss_pred HHHHHHHHhCCC-CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 012929 261 ILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (453)
Q Consensus 261 ~Ll~~l~~~i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~l 339 (453)
+|++.+.+.++. .+...+.+...+|+.++++. +..+.+ .+++++++|+||+++++|+.|+|+++.+++.++++.+
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~~Lk~--~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LEVLKK--YGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HHHHHh--cCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 888888765531 12335566656899898766 555544 3578999999999999999999999999999999999
Q ss_pred HHhCCCc-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 340 IELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 340 r~~~pgi-~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+++ |+ .+++|||+|+||||.+++.+|++++.+++++++.++.+++.|||+++
T Consensus 315 r~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~ 367 (488)
T PRK08207 315 REM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLT 367 (488)
T ss_pred HhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHH
Confidence 999 98 89999999999999999999999999999999999999999999999
No 46
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.90 E-value=1e-21 Score=194.66 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=160.8
Q ss_pred ceEEEEEeCCCCCCC----ccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCc---------C
Q 012929 191 KFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI---------G 256 (453)
Q Consensus 191 ~~~~~i~isrGC~~~----CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~-d~~~yg~d~---------~ 256 (453)
..++-|+++|||++. ||||..|.. |...+||+|+|++|++.|.+.|++++.+--| |+++|+.+. +
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 456789999999987 999999975 9999999999999999999999999998743 677786552 1
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH---HHHH-HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHH
Q 012929 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK---EIAE-VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332 (453)
Q Consensus 257 ~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~---~l~~-l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~ 332 (453)
..+.+|.+.+...-| +...+.+...||..+.++-+ ++.+ +.+..---+-..+|+||+++++.+.-|=..|.|+.
T Consensus 261 ealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEv 338 (560)
T COG1031 261 EALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEV 338 (560)
T ss_pred HHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHH
Confidence 246667777766555 67778888888876654332 3332 22222112678899999999999999889999999
Q ss_pred HHHHHHHHHhC--------CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc-----CCCeEEEEecccCCCCHhH
Q 012929 333 RTVVDTLIELV--------PGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 333 ~~~i~~lr~~~--------pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l-----~~~~i~i~~~sp~pGT~~~ 393 (453)
.++|+.+.+.- |-+....+||+|+||||.|.|+.+.+|++++ -+.++++-+..++||||+|
T Consensus 339 l~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~ 412 (560)
T COG1031 339 LEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMW 412 (560)
T ss_pred HHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchh
Confidence 99999999862 2356778999999999999999999999988 2568999999999999999
No 47
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=4e-22 Score=203.76 Aligned_cols=182 Identities=17% Similarity=0.251 Sum_probs=148.4
Q ss_pred CCCCccccccccccCc-c-ccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC
Q 012929 202 CLGACTYCKTKHARGH-L-GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~-~-rsr~~e~Iv~Ei~~l~~~----G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (453)
|..+|+||.+...... . ..+..+.+.+||+...+. .++.|.|.|.+.+.... ..+.+|++.+.+.++....
T Consensus 14 C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~L~~ll~~i~~~f~~~~~ 90 (380)
T PRK09057 14 CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQP---ETVAALLDAIARLWPVADD 90 (380)
T ss_pred cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCH---HHHHHHHHHHHHhCCCCCC
Confidence 9999999998754321 1 123678899999865542 46788887766655432 3577888888776642233
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEe
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG 355 (453)
..+.+. ++|..++.+. +..+.+ .++++|++|+||+++++|+.|||+++.+++.++++.++++ +..++.|+|+|
T Consensus 91 ~eit~E-~~P~~i~~e~--L~~l~~--~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~~v~~dli~G 163 (380)
T PRK09057 91 IEITLE-ANPTSVEAGR--FRGYRA--AGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FPRVSFDLIYA 163 (380)
T ss_pred ccEEEE-ECcCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CccEEEEeecC
Confidence 456665 7999888754 555544 4679999999999999999999999999999999999999 88999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+||+|.+++.++++.+.+++++++.++++++.|||+++
T Consensus 164 lPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~ 201 (380)
T PRK09057 164 RPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFY 201 (380)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHH
Confidence 99999999999999999999999999999999999999
No 48
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.89 E-value=3.8e-22 Score=202.71 Aligned_cols=182 Identities=16% Similarity=0.292 Sum_probs=144.3
Q ss_pred CCCCccccccccccCc--cccCCHHHHHHHHHHHHH-CC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC
Q 012929 202 CLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~-~G---~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (453)
|+.+|.||.+.....+ ....-.+.+++|++...+ .| ++.|.|.|.+.+.... ..+.++++.+.+.+.....
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~~~~~~~~ 86 (360)
T TIGR00539 10 CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQHASLSDD 86 (360)
T ss_pred CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHHhCCCCCC
Confidence 9999999998654221 112245677778776443 24 6788888766655432 3567777777655431133
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc-EEEEEEEE
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDIIC 354 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~v~~~~Iv 354 (453)
..+.+. ++|..++++. +..+.+ .+++++++|+||+++++|+.|+|.++.+++.++++.++++ |+ .++.|+|+
T Consensus 87 ~eitie-~np~~lt~e~--l~~l~~--~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~~v~~dli~ 159 (360)
T TIGR00539 87 CEITTE-ANPELITAEW--CKGLKG--AGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIENISLDLMY 159 (360)
T ss_pred CEEEEE-eCCCCCCHHH--HHHHHH--cCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCCeEEEeccC
Confidence 456665 7999998765 555544 3679999999999999999999999999999999999999 98 58999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+||||.+++.++++++.+++++++.++.|+|.|||+++
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~ 198 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFE 198 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhh
Confidence 999999999999999999999999999999999999998
No 49
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=9e-22 Score=202.06 Aligned_cols=182 Identities=19% Similarity=0.282 Sum_probs=148.3
Q ss_pred CCCCccccccccccCc-----cccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 202 CLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~-----~rsr~~e~Iv~Ei~~l~~----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
|+.+|.||.++..... ...+-.+.+.+||+.... ..++.|.|.|.+.+.... ..+.+|++.+.+.++.
T Consensus 29 C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~ll~~i~~~~~~ 105 (394)
T PRK08898 29 CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDRLLSDVRALLPL 105 (394)
T ss_pred ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHHHHHHHHHhCCC
Confidence 9999999998754221 113457888888886542 246778887777666533 3678888888877653
Q ss_pred CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Q 012929 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~ 352 (453)
.....+.+. ++|..++.+. +..+.+ .+++++++|+||+++++|+.|+|.++.+++.++++.+++. +..++.|+
T Consensus 106 ~~~~eit~E-~~p~~~~~e~--L~~l~~--~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dl 178 (394)
T PRK08898 106 DPDAEITLE-ANPGTFEAEK--FAQFRA--SGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH--FDNFNLDL 178 (394)
T ss_pred CCCCeEEEE-ECCCCCCHHH--HHHHHH--cCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh--CCceEEEE
Confidence 233567776 7899888654 655554 4679999999999999999999999999999999999998 77899999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+|+||+|.+++.++++++.+++++++.++.|++.|||+++
T Consensus 179 I~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~ 219 (394)
T PRK08898 179 MYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFA 219 (394)
T ss_pred EcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhh
Confidence 99999999999999999999999999999999999999997
No 50
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=1.1e-21 Score=203.47 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=151.0
Q ss_pred ceEEEEEeCCCCCCCccccccccccCc---cccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~Ei~~l~~~----G~~eI~l~~~d~~~yg~d~~~~l~~Ll 263 (453)
+...||.|-. |+.+|+||.++...+. .....++.+++||+.+.+. .+..|.|.|.+.+.... ..+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 4456777765 9999999998765432 3345679999999977643 25566665544333322 3567788
Q ss_pred HHHHHhCCCCC-CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 012929 264 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 264 ~~l~~~i~~~~-~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~ 342 (453)
+.+.+.++... ...+.+. ++|..++++. +..+.+ .++++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l~~l~~--~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--LALLAA--RGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 88766543111 2345555 7898888765 554444 4679999999999999999999999999999999999999
Q ss_pred CCCcE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 343 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 343 ~pgi~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+. ++.|||+|+||||.++++++++++.+++++++.++++++.|||+++
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~ 239 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLG 239 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccc
Confidence 986 6899999999999999999999999999999999999999999998
No 51
>PRK06256 biotin synthase; Validated
Probab=99.88 E-value=1.3e-21 Score=197.08 Aligned_cols=179 Identities=18% Similarity=0.266 Sum_probs=142.2
Q ss_pred CCCCCCCccccccccccC----ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 012929 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (453)
Q Consensus 199 srGC~~~CsFC~~~~~rg----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (453)
|+||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ -..+.++++.+.+. . +
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~-~--~ 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEE-T--D 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhc-C--C
Confidence 899999999999986543 36788999999999999999999988875322211110 02455666666543 1 2
Q ss_pred CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Q 012929 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (453)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv 354 (453)
+.+. ++...++++. +..+.+ .++..+++++|| |+++++.|+++++.+++.++++.++++ |+.+.+++|+
T Consensus 141 ---i~~~-~~~g~l~~e~--l~~Lke--aG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~~~~I~ 209 (336)
T PRK06256 141 ---LEIC-ACLGLLTEEQ--AERLKE--AGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPCSGGII 209 (336)
T ss_pred ---CcEE-ecCCcCCHHH--HHHHHH--hCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeeccCeEE
Confidence 2222 2233355544 444444 456899999999 999999999999999999999999999 9999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+ |||.+|+.++++++++++++.+.++.|.|+||||++
T Consensus 210 Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~ 247 (336)
T PRK06256 210 GM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLE 247 (336)
T ss_pred eC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCC
Confidence 98 999999999999999999999999999999999998
No 52
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1e-21 Score=200.03 Aligned_cols=180 Identities=17% Similarity=0.257 Sum_probs=138.3
Q ss_pred CCCCccccccccccCc-c-ccCCHHHHHHH-HHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 012929 202 CLGACTYCKTKHARGH-L-GSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~-~-rsr~~e~Iv~E-i~~l~~----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (453)
|+.+|.||.+...... . ...-++.+++| ++.... ..++.|.|.|.+.+.... ..+.+|++.+.+. .
T Consensus 16 C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~~i~~~----~ 88 (370)
T PRK06294 16 CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILKTLEAP----H 88 (370)
T ss_pred ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHhC----C
Confidence 9999999987653211 1 11124556666 443332 235667776655443321 2566677666432 3
Q ss_pred CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EEEEEE
Q 012929 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDII 353 (453)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~~~~I 353 (453)
...+.+. ++|..++++. +..+.+ .+++++++|+||+++++|+.|+|+++.+++.++++.+++. |+. ++.|+|
T Consensus 89 ~~eit~E-~~P~~~~~~~--l~~l~~--~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~--g~~~v~~Dli 161 (370)
T PRK06294 89 ATEITLE-ANPENLSESY--IRALAL--TGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH--GFSNLSIDLI 161 (370)
T ss_pred CCeEEEE-eCCCCCCHHH--HHHHHH--CCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCeEEEEee
Confidence 4567775 8999988765 554444 4679999999999999999999999999999999999999 984 999999
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhHHH
Q 012929 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395 (453)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~~~ 395 (453)
+|+||||.++|.++++++.+++++++.++.++|.||||+++.
T Consensus 162 ~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 162 YGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred cCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHH
Confidence 999999999999999999999999999999999999999943
No 53
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=3e-21 Score=197.54 Aligned_cols=182 Identities=15% Similarity=0.199 Sum_probs=145.2
Q ss_pred CCCCccccccccccCc--cccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC
Q 012929 202 CLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (453)
|..+|.||.+...... ....-.+.+.+|++.... ..++.|.|.|.+.+.... ..+.++++.+.+.+.....
T Consensus 21 C~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~~i~~~~~~~~~ 97 (390)
T PRK06582 21 CLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIINKISNLAIIDNQ 97 (390)
T ss_pred CcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhCCCCCC
Confidence 9999999998654321 112245677888886543 246778887766554432 3556677777664321144
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEe
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG 355 (453)
..+.+. ++|..++++. +..+.. .++++|++|+||+++++|+.|+|.++.++..++++.+++. +..++.|+|+|
T Consensus 98 ~eitiE-~nP~~~~~e~--l~~l~~--~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~--~~~v~~DlI~G 170 (390)
T PRK06582 98 TEITLE-TNPTSFETEK--FKAFKL--AGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI--FPRVSFDLIYA 170 (390)
T ss_pred CEEEEE-eCCCcCCHHH--HHHHHH--CCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CCcEEEEeecC
Confidence 567776 7999888754 555544 4579999999999999999999999999999999999998 88999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+||+|.+++.++++.+.+++++++.++.+++.|||+++
T Consensus 171 lPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~ 208 (390)
T PRK06582 171 RSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFY 208 (390)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHH
Confidence 99999999999999999999999999999999999999
No 54
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.86 E-value=1e-20 Score=193.24 Aligned_cols=189 Identities=17% Similarity=0.266 Sum_probs=149.1
Q ss_pred EEEEeCCCCCCCccccccccccCc--cc-cCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 194 EILPINVGCLGACTYCKTKHARGH--LG-SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~--~r-sr~~e~Iv~Ei~~l~~----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
.||.|-. |+.+|.||.+.....+ .. ..-.+.+++||+.... .+++.|.|.|.+.+.... ..+.++++.+
T Consensus 9 lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~~l 84 (378)
T PRK05660 9 LYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLDGV 84 (378)
T ss_pred EEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHHHH
Confidence 3455544 9999999998643221 11 1125667788875322 468889888877665532 3677888888
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi 346 (453)
.+.++......+.+. ++|..++++. +..+.+ .++++|++|+||+++++|+.|+|.++.++..++++.++++ |+
T Consensus 85 ~~~~~~~~~~eit~e-~np~~l~~e~--l~~Lk~--~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~--G~ 157 (378)
T PRK05660 85 RARLPFAPDAEITME-ANPGTVEADR--FVGYQR--AGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL--GL 157 (378)
T ss_pred HHhCCCCCCcEEEEE-eCcCcCCHHH--HHHHHH--cCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CC
Confidence 776542223466666 7899888755 555544 4679999999999999999999999999999999999999 98
Q ss_pred E-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 347 Q-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 347 ~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
. ++.|+|+|+||+|.+++.++++++.+++++++.++++++.|||+++
T Consensus 158 ~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~ 205 (378)
T PRK05660 158 RSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFG 205 (378)
T ss_pred CeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCccc
Confidence 5 7999999999999999999999999999999999999999999998
No 55
>PLN02428 lipoic acid synthase
Probab=99.86 E-value=1.7e-20 Score=186.53 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=148.8
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i 270 (453)
...++.+++||+++|.||.++..+++.+.+ ++++.+.++.+.+.|+++++|++.+...+ .|.+ ..+.++++.|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 455789999999999999999877766665 67788888888888999999999876554 2222 46788888887643
Q ss_pred CCCCCceEEEEecCCcCh-hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCcEE
Q 012929 271 PPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~-R~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
.++++..+.|+.+ ++++ +..++. .++..++.++|+ ++++++.|+ ++.+.++++++++.+++..||+.+
T Consensus 180 -----P~i~Ie~L~pdf~~d~el--L~~L~e--AG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~t 249 (349)
T PLN02428 180 -----PEILVEALVPDFRGDLGA--VETVAT--SGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLT 249 (349)
T ss_pred -----CCcEEEEeCccccCCHHH--HHHHHH--cCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 3567777777654 3333 555544 456789999997 899999999 688999999999999999999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecc
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~s 385 (453)
.++||+|+ |||++|+.++++++++++++.+.+.+|.
T Consensus 250 kSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL 285 (349)
T PLN02428 250 KTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL 285 (349)
T ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc
Confidence 99999999 9999999999999999999999998885
No 56
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.86 E-value=1.5e-20 Score=174.87 Aligned_cols=191 Identities=35% Similarity=0.530 Sum_probs=152.4
Q ss_pred EEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G-----~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| ++.+.|.|.+...... ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 357899999999999999987655577788999999999997664 3566776655444321 13677888887
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-c
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 346 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg-i 346 (453)
+.........+.+. +++..+++.. +..+.+. ++..+.++++|+++++++.++++.+.+++.+.++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~~--~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKEA--GVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHHc--CCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 64320002334443 5655566554 5555543 345899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 347 ~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+.+.+|+|+|+++.+++.++++++.+++++.+.++.|.|.|||+++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~ 198 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHH
Confidence 99999999999999999999999999999999999999999999998
No 57
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.86 E-value=1.5e-20 Score=186.12 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=144.4
Q ss_pred EEEEEe-CCCCCCCcccccccccc---C-ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 193 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 193 ~~~i~i-srGC~~~CsFC~~~~~r---g-~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
.+.+.+ |+||+++|.||..+... + ..+.+++++|+++++.+.+.|++.+.+++...... ...+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHH
Confidence 345565 99999999999987643 2 36789999999999999989999987765322111 123345666555
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
+.....+. .+. ++...++++. +..+.+ .++..+.+|+| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~i---~~~-~~~g~~~~e~--l~~Lk~--aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMGL---KTC-ATLGLLDPEQ--AKRLKD--AGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCCC---eEE-ecCCCCCHHH--HHHHHH--cCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 43221122 222 3334455544 444444 46789999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+|+|+ +||.+++.++++++.+++++.+.++.|.|.|||+++
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~ 218 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLA 218 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccC
Confidence 999999998 999999999999999999999999999999999998
No 58
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.6e-20 Score=194.50 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=140.1
Q ss_pred EEEEEeCCCCCCCccccccccc-cCccc-cCCHHHHHHHHHHHHHCC--CcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHA-RGHLG-SYTVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~-rg~~r-sr~~e~Iv~Ei~~l~~~G--~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
..||.+-- |+++|+||.++.. .++.+ ...++.+.+|++.+.+.| +..|.|.|.+.+.. ...+.++++.+.+
T Consensus 54 ~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l----~~~L~~ll~~i~~ 128 (433)
T PRK08629 54 MLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL----EDELAKTLELAKK 128 (433)
T ss_pred EEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC----HHHHHHHHHHHHH
Confidence 33444443 9999999998754 22222 224799999999877654 45566666544432 1356777777766
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC-CcE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-GMQ 347 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~p-gi~ 347 (453)
.+ ....+.+. ++|+.++++. +..+.. . |+++++|+||+++++|+.|+|.++.++..++++.++++.. ...
T Consensus 129 ~f---~i~eis~E-~~P~~lt~e~--L~~l~~--~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~ 199 (433)
T PRK08629 129 LF---SIKEVSCE-SDPNHLDPPK--LKQLKG--L-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPI 199 (433)
T ss_pred hC---CCceEEEE-eCcccCCHHH--HHHHHH--h-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCe
Confidence 54 34466665 7999998765 544433 3 7999999999999999999999987666666665555421 456
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
++.|+|+|+||||.+++.++++++.++++++++++++++.|||...
T Consensus 200 v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 200 INVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 8999999999999999999999999999999999999999999855
No 59
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.86 E-value=6.5e-21 Score=192.01 Aligned_cols=189 Identities=18% Similarity=0.253 Sum_probs=148.1
Q ss_pred EEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---------CCCHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILL 263 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---------~~~l~~Ll 263 (453)
..+|.+|+||+.+|+||.++...|..+++++|+|+++++.+.+.|++++.|++.+...+..+. ...+.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 357899999999999999998888888999999999999999999999999986654443111 02345566
Q ss_pred HHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC---CCCHHHHHHHHHHHH
Q 012929 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLI 340 (453)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R---~~t~e~~~~~i~~lr 340 (453)
+++.+.+. . +-.+..+++..++++. +..+.+.. ..+++++||+++.+++.|++ +.+.++..+.++.++
T Consensus 93 ~~i~~~~~--~--~g~~~~~~~~~lt~e~--i~~Lk~ag---~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 93 YDLCELAL--E--EGLLPHTNAGILTREE--MEKLKEVN---ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHh--h--cCCCccccCCCCCHHH--HHHHHHhC---CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 66654321 1 1112246777777655 55554432 35678899999999998865 445788899999999
Q ss_pred HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEecccCCCCHhH
Q 012929 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~i~i~~~sp~pGT~~~ 393 (453)
+. |+.+.+++|+|+ |||.+++.+++.++++++ +..+.+++|+|.||||+.
T Consensus 164 ~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~ 218 (336)
T PRK06245 164 KL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPME 218 (336)
T ss_pred Hc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcc
Confidence 98 999999999999 999999999999999985 577889999999999986
No 60
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.85 E-value=4.3e-20 Score=193.20 Aligned_cols=186 Identities=19% Similarity=0.286 Sum_probs=148.9
Q ss_pred EEEEeCCCCCCCccccccccccCc---cccCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 012929 194 EILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~Ei~~l~~-----~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (453)
.||.|-. |+++|.||..+...+. .+...++.+++|++.+.. .+++.|.|.|.+.+.... ..+.+|++.
T Consensus 52 lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll~~ 127 (455)
T TIGR00538 52 LYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLMKL 127 (455)
T ss_pred EEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHHHH
Confidence 3555544 9999999998765432 333468999999998743 378889998876654432 367788888
Q ss_pred HHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 012929 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 266 l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg 345 (453)
+.+.++......+.+. ++|..++++. +..+.+ .++++|+||+||+++++|+.|+|.++.+++.++++.++++ |
T Consensus 128 i~~~~~~~~~~eitie-~np~~l~~e~--l~~lk~--~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~--G 200 (455)
T TIGR00538 128 IRENFPFNADAEISIE-IDPRYITKDV--IDALRD--EGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA--G 200 (455)
T ss_pred HHHhCCCCCCCeEEEE-eccCcCCHHH--HHHHHH--cCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--C
Confidence 8765432123456665 7898888765 555544 3679999999999999999999999999999999999999 9
Q ss_pred cE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 346 MQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 346 i~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
+. +..|+|+|+||||.+++.++++++.+++++++.++.|++.|++
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 201 FTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWV 246 (455)
T ss_pred CCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccch
Confidence 85 8999999999999999999999999999999999999988875
No 61
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.84 E-value=7.6e-20 Score=191.08 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=148.0
Q ss_pred eEEEEEeCCCCCCCccccccccccC-c--cccCCHHHHHHHHHHHHHC-----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg-~--~rsr~~e~Iv~Ei~~l~~~-----G~~eI~l~~~d~~~yg~d~~~~l~~Ll 263 (453)
...||.|-. |+++|.||....... + .....++.+++||+...+. ++..|.|.|.+.+.... ..+.+|+
T Consensus 51 ~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~ll 126 (453)
T PRK13347 51 VSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERLM 126 (453)
T ss_pred eEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHHH
Confidence 345777777 999999998764321 1 1122368999999876543 56788888876665533 3678888
Q ss_pred HHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
+.+.+.++......+.+. ++|..++++. +..+.+ .++++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l~~L~~--~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~- 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTVTAEM--LQALAA--LGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA- 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccCCHHH--HHHHHH--cCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-
Confidence 888775532122455665 7899888765 554444 4679999999999999999999999999999999999999
Q ss_pred CCcE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 344 pgi~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
|+. ++.|+|+|+||||.+++.+|++++.+++++++.++.|+..|++
T Consensus 201 -G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~ 247 (453)
T PRK13347 201 -GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSR 247 (453)
T ss_pred -CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccch
Confidence 985 9999999999999999999999999999999999999866654
No 62
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.84 E-value=6.8e-20 Score=191.54 Aligned_cols=185 Identities=19% Similarity=0.254 Sum_probs=146.8
Q ss_pred EEEeCCCCCCCccccccccccCc---cccCCHHHHHHHHHHHHHC-----CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~---~rsr~~e~Iv~Ei~~l~~~-----G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
||.|-. |+++|+||..+...+. ...+.++.|++|++.+.+. ++..|.|.|.+.+.... ..+.+|++.+
T Consensus 53 YvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~---~~l~~ll~~l 128 (453)
T PRK09249 53 YVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSP---EQLRRLMALL 128 (453)
T ss_pred EEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCH---HHHHHHHHHH
Confidence 444433 9999999998754332 2334678999999976542 57788887766554422 3678888888
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi 346 (453)
.+.++......+.+. ++|..++++. +..+.+ .+|++|+||+||+++++|+.|+|.++.+++.++++.++++ |+
T Consensus 129 ~~~~~~~~~~e~tie-~np~~lt~e~--l~~l~~--aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~--G~ 201 (453)
T PRK09249 129 REHFNFAPDAEISIE-IDPRELDLEM--LDALRE--LGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL--GF 201 (453)
T ss_pred HHhCCCCCCCEEEEE-ecCCcCCHHH--HHHHHH--cCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CC
Confidence 765431123456665 7899888765 555544 4689999999999999999999999999999999999999 98
Q ss_pred -EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 347 -QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 347 -~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
.+.+|+|+|+||||.++++++++++.+++++++.++.|++.|++
T Consensus 202 ~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 202 TSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWL 246 (453)
T ss_pred CcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhh
Confidence 89999999999999999999999999999999999999977765
No 63
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.82 E-value=6.5e-19 Score=184.73 Aligned_cols=184 Identities=21% Similarity=0.271 Sum_probs=145.9
Q ss_pred CCCCC-Ccccccc-------ccc---------cC-ccccCCHHHHHHHHHHHHHCC--C--cEEEEeecCCCCCCCCcCC
Q 012929 200 VGCLG-ACTYCKT-------KHA---------RG-HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 257 (453)
Q Consensus 200 rGC~~-~CsFC~~-------~~~---------rg-~~rsr~~e~Iv~Ei~~l~~~G--~--~eI~l~~~d~~~yg~d~~~ 257 (453)
.-||+ .|.||-- |.. |+ +.+..|..++.++++++...| + -|+.|.|.+++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 34995 7999964 211 11 357789999999999999865 3 25588898998885542
Q ss_pred CHHHHHHHHHHhCCC----------------------CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCC
Q 012929 258 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (453)
Q Consensus 258 ~l~~Ll~~l~~~i~~----------------------~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESg 315 (453)
...+++.+.+.++. .....++++ ++|+.++++. +..|.+ .+|+++.+|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~~--~G~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRMLK--LGATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHHH--cCCCEEEEECccC
Confidence 23344444333320 012345555 6899998765 655554 4679999999999
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh---cCCCeEEEEecccCCCCHh
Q 012929 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 316 s~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~---l~~~~i~i~~~sp~pGT~~ 392 (453)
++++|+.|||+++.+++.++++.++++ |+.+.++||+|+||+|.+++.+|++.+.+ ++++.+.++++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999984 8999999999999999999
Q ss_pred H
Q 012929 393 L 393 (453)
Q Consensus 393 ~ 393 (453)
+
T Consensus 306 ~ 306 (522)
T TIGR01211 306 Y 306 (522)
T ss_pred H
Confidence 9
No 64
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.82 E-value=1.9e-19 Score=179.19 Aligned_cols=186 Identities=16% Similarity=0.259 Sum_probs=140.4
Q ss_pred EEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
.+|.+|+||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|.+...... ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 36889999999999999876444 3567899999999999999999999999754433221 246788888877543
Q ss_pred CCCCceEEEEec-------CCcChhHHHHHHHHHHhCCCCceee-ecccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 012929 272 PDGSTMLRIGMT-------NPPFILEHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 272 ~~~~~~ir~~~~-------~p~~i~~~l~~l~~l~~~~~~~~~l-~iglESgs~~vLk~m-~R~~t~e~~~~~i~~lr~~ 342 (453)
...+..++-. ......++. +..|.+ .++..+ +.|+|++++++++.+ +++.+.+++.++++.+++.
T Consensus 84 --~i~~~~~s~~e~~~~~~~~g~~~~e~--l~~Lke--AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 84 --DVHIHAFSPMEVYFLAKNEGLSIEEV--LKRLKK--AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHHHH--HHHHHH--cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 2333222110 001112222 444444 455667 479999999999888 6677999999999999999
Q ss_pred CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC----CCCH
Q 012929 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGIQ 391 (453)
Q Consensus 343 ~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~----pGT~ 391 (453)
|+.+.+++|+|+| ||.+|+.+++.++++++.+..++..|.|. +|||
T Consensus 158 --Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~ 207 (309)
T TIGR00423 158 --GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNP 207 (309)
T ss_pred --CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCCh
Confidence 9999999999986 89999999999999999887777666664 5888
No 65
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.82 E-value=1.6e-19 Score=182.36 Aligned_cols=188 Identities=16% Similarity=0.297 Sum_probs=145.6
Q ss_pred EEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
..|.+|+||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|.+...+.. ..+.++++.|.+..+
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~ 117 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP 117 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 35788999999999999875443 2234799999999999999999999999765433322 245788888876544
Q ss_pred CCCCceEEEE-------ecCCcChhHHHHHHHHHHhCCCCceeee-cccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 012929 272 PDGSTMLRIG-------MTNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 342 (453)
Q Consensus 272 ~~~~~~ir~~-------~~~p~~i~~~l~~l~~l~~~~~~~~~l~-iglESgs~~vLk~m~R~-~t~e~~~~~i~~lr~~ 342 (453)
+..|..++ .......+++. +..|.+ .++..++ .+.|+.++++++.+.++ .+.+++.++++.++++
T Consensus 118 --~i~~~~~t~~ei~~~~~~~g~~~~e~--l~~Lke--AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 118 --GMHIHAFSPMEVYYGARNSGLSVEEA--LKRLKE--AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL 191 (343)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHHHH--HHHHHH--hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc
Confidence 33332221 00122233332 455554 3566776 57899999999999986 5999999999999999
Q ss_pred CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCC----CCHhH
Q 012929 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GIQFL 393 (453)
Q Consensus 343 ~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~p----GT~~~ 393 (453)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|+| |||++
T Consensus 192 --Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~ 243 (343)
T TIGR03551 192 --GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLY 243 (343)
T ss_pred --CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccc
Confidence 9999999999986 999999999999999999999999999977 99997
No 66
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.81 E-value=4e-19 Score=177.70 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=141.1
Q ss_pred EEEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CC
Q 012929 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 257 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg------------~d~-~~ 257 (453)
..+|++|+||+++|+||.++...|. .+.+++|+|+++++.+.+.|++++.+++..-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 3578999999999999999887775 55899999999999999999999998853211111 000 01
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCC----CHHHHH
Q 012929 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 333 (453)
Q Consensus 258 ~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~----t~e~~~ 333 (453)
.+.++++.+.++. + + +..+++..++++. +..+.+.+ . .+++.+|+.++.+++.|++.+ +.++..
T Consensus 85 ~~~~~~~~i~~e~---~---~-~~~~~~g~lt~e~--l~~Lk~aG--~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEET---G---L-LPHTNPGVMSRDE--LARLKPVN--A-SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhc---C---C-ccccCCCCCCHHH--HHHHHhhC--C-CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 3445555554321 1 1 2235666666654 55454432 2 457889999999888787654 467899
Q ss_pred HHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEecccCCCCHhH
Q 012929 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 334 ~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~i~i~~~sp~pGT~~~ 393 (453)
+.++.+++. |+.+.+++|+|+ |||++|+.+++.++++++ +..+.+++|.|.||||+.
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~ 214 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPME 214 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCcc
Confidence 999999999 999999999997 999999999999999997 667777999999999987
No 67
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.79 E-value=2.1e-18 Score=158.31 Aligned_cols=183 Identities=23% Similarity=0.380 Sum_probs=146.0
Q ss_pred EEeCCCCCCCccccccccccCccccCCH--HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 012929 196 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (453)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg~~rsr~~--e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (453)
+.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.+++.+.... ..+.++++.+.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~-----~~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLY-----PELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCcc-----HhHHHHHHHHHhhCC--
Confidence 3678999999999999877654433333 3566666666667889999988776554 257888888876432
Q ss_pred CCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCcEEEEEE
Q 012929 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 274 ~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~-R~~t~e~~~~~i~~lr~~~pgi~v~~~~ 352 (453)
...+++. ++...+++.. +..++.. ++..+.++++|.++..++.++ ++.+.+++.+.++.+++. |+.+.+.+
T Consensus 74 -~~~~~i~-T~~~~~~~~~--~~~l~~~--g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 145 (204)
T cd01335 74 -GFEISIE-TNGTLLTEEL--LKELKEL--GLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTL 145 (204)
T ss_pred -CceEEEE-cCcccCCHHH--HHHHHhC--CCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEE
Confidence 3455554 4554444433 4555443 567999999999999999998 788999999999999999 99999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEecccCCCCHhH
Q 012929 353 ICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~-~~~i~i~~~sp~pGT~~~ 393 (453)
|+|.|+++.+++.++++.+.++. ++.+++++|+|.|||+++
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999999999999999999998 899999999999999987
No 68
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=157.29 Aligned_cols=188 Identities=19% Similarity=0.343 Sum_probs=136.3
Q ss_pred EEEeCCCCCCC--------ccccccccccCc---cccCCH-HHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHH
Q 012929 195 ILPINVGCLGA--------CTYCKTKHARGH---LGSYTV-ESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLP 260 (453)
Q Consensus 195 ~i~isrGC~~~--------CsFC~~~~~rg~---~rsr~~-e~Iv~Ei~~l~~~--G~~eI~l~~~d~~~yg~d~~~~l~ 260 (453)
.|-.+-.||++ |+||..... |. -+..|+ +++-++++.+.+. +.+.|...-.=++.|.. .
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~-~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------v 99 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGS-GDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------V 99 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCC-CccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------H
Confidence 34455568875 999987532 22 233344 3455555545443 33444332223334422 3
Q ss_pred HHHHHHHHh-CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 012929 261 ILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339 (453)
Q Consensus 261 ~Ll~~l~~~-i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~l 339 (453)
+.|+++.+. +...++..+.++ +.|+-++++.-++.+-... ...-++.+|+||.++++|+.+||+|+.+.|.+++.++
T Consensus 100 evLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~-r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~ 177 (312)
T COG1242 100 EVLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNK-RYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRL 177 (312)
T ss_pred HHHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhh-heEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHH
Confidence 444444332 221266777777 7898888766333332232 2567999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 340 r~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+. ||.+.+.+|+|+||||.+++.+|++.+..++++-+.++++....|||+.
T Consensus 178 rkr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~ 229 (312)
T COG1242 178 RKR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPME 229 (312)
T ss_pred HHc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHH
Confidence 999 9999999999999999999999999999999999999999999999999
No 69
>PRK06267 hypothetical protein; Provisional
Probab=99.79 E-value=2.5e-18 Score=173.69 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=139.2
Q ss_pred eEEEEEeCCCCC--CCccccccccccC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 012929 192 FVEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (453)
Q Consensus 192 ~~~~i~isrGC~--~~CsFC~~~~~rg-----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~ 264 (453)
..+.|..|.+|+ ++|+||..+...+ .++.+++|+|++|++.+.+.|++.+.++|... +. ...+.++++
T Consensus 27 l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~---~~el~~i~e 101 (350)
T PRK06267 27 LERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YT---TEEINDIAE 101 (350)
T ss_pred EEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CC---HHHHHHHHH
Confidence 345677899999 9999999876433 35688999999999999999999777766432 21 134666777
Q ss_pred HHHHhCCCCCC-ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 265 AIVAELPPDGS-TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 265 ~l~~~i~~~~~-~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
.+.. +. +. .++.++.++. .. +.. ... ..+..++||.++++++.++++.+.+++.++++.++++
T Consensus 102 ~I~~-~~--~~~~~~s~G~~d~-----~~--~~~-~~l----~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a- 165 (350)
T PRK06267 102 MIAY-IQ--GCKQYLNVGIIDF-----LN--INL-NEI----EGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL- 165 (350)
T ss_pred HHHH-hh--CCceEeecccCCH-----HH--Hhh-ccc----cCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc-
Confidence 7654 22 21 3444332221 11 111 111 2245689999999999999999999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 344 pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+.+.+.+|+|+ |||.+|+.++++++.+++++.+.++.|+|.||||+.
T Consensus 166 -Gi~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~ 213 (350)
T PRK06267 166 -GLKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFE 213 (350)
T ss_pred -CCeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCC
Confidence 999999999996 999999999999999999999999999999999988
No 70
>PRK08445 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=175.15 Aligned_cols=188 Identities=13% Similarity=0.149 Sum_probs=140.3
Q ss_pred EEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.|.+|.||+++|+||......+ .....++++|++.++...+.|.++|++.|.+...+.. ..+.++++.|.+.++
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4788999999999999976432 2235599999999999999999999998755444322 356788888888765
Q ss_pred CCCceEEEEecCCcChhH-----HHHHHHHHHhCCCCceee-ecccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCC
Q 012929 273 DGSTMLRIGMTNPPFILE-----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~-----~l~~l~~l~~~~~~~~~l-~iglESgs~~vLk~m-~R~~t~e~~~~~i~~lr~~~pg 345 (453)
...+..++..+.+.+.. ..+.+..+.+ .++.++ ++|+||+++++++.+ +++.+.+++.++++.++++ |
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~e~L~~Lke--AGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--G 195 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIKEVLERLQA--KGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--G 195 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHH--cCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--C
Confidence 33333222111111110 0122444444 344566 599999999999999 7789999999999999999 9
Q ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCe-----EEEEecccCCCCHhH
Q 012929 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ-----VHISQFYPRPGIQFL 393 (453)
Q Consensus 346 i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~-----i~i~~~sp~pGT~~~ 393 (453)
+.+.+.+|+|+ +||.+++.+.+.++++++.+. +-+..|.| ||||++
T Consensus 196 i~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~ 246 (348)
T PRK08445 196 MKSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLK 246 (348)
T ss_pred CeeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccc
Confidence 99999999997 699999999999999997654 33344555 999986
No 71
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.78 E-value=3.8e-18 Score=175.47 Aligned_cols=182 Identities=22% Similarity=0.334 Sum_probs=146.6
Q ss_pred CCCCccccccccccCc---cccCCHHHHHHHHHHHHHC-C----CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC-C
Q 012929 202 CLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD-G----VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP-P 272 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~---~rsr~~e~Iv~Ei~~l~~~-G----~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~-~ 272 (453)
|...|.||.+.....+ ....-.+.+.+|++..... | ++.|.|.|.+.+.... ..+..|+..|.+.++ .
T Consensus 44 C~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~ll~~l~~~~~~~ 120 (416)
T COG0635 44 CVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERLLKALRELFNDL 120 (416)
T ss_pred ccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHHHHHHHHhcccC
Confidence 9999999998754322 2222356778888887765 2 5667777755544432 467788888877662 2
Q ss_pred CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc-EEEEE
Q 012929 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATD 351 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~v~~~ 351 (453)
.....+.+. ++|..++.+. +..+.. .+.+++++||||.++++||.++|.++.++..++++.+++. |+ .++.|
T Consensus 121 ~~~~EitiE-~nP~~~~~e~--~~~l~~--~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~--g~~~in~D 193 (416)
T COG0635 121 DPDAEITIE-ANPGTVEAEK--FKALKE--AGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKA--GFTSINID 193 (416)
T ss_pred CCCceEEEE-eCCCCCCHHH--HHHHHH--cCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHc--CCCcEEEE
Confidence 234778888 6999888765 554444 4568999999999999999999999999999999999998 75 49999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+|+|+|++|.+++.++++.+.+++++++.++.|+-.|+|+++
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~ 235 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFA 235 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhh
Confidence 999999999999999999999999999999999999999999
No 72
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.78 E-value=4.4e-18 Score=151.78 Aligned_cols=162 Identities=21% Similarity=0.389 Sum_probs=127.4
Q ss_pred EEeCCCCCCCcccccccc--ccCccccCCHHHHHHHHHHH-HHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 196 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 196 i~isrGC~~~CsFC~~~~--~rg~~rsr~~e~Iv~Ei~~l-~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
|++++||+++|.||..+. ..+..+.+++++++++++.+ .+.|...+.+.+.+...+ .++.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 45668899999999999999 588888888887666554 356777777765421
Q ss_pred CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHH-HHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEE
Q 012929 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~-vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~ 351 (453)
....+.+. +++....++. +..+.+.. +.++.+++||.+++ +++.|+++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~~~--l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDEEL--LDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCHHH--HHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhHHH--HHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 23444444 4444443333 55555543 67999999999999 999999999999999999999999 8876889
Q ss_pred EEEeCCCCCHHHHHHHHHHH
Q 012929 352 IICGFPGETDEDFNQTVNLI 371 (453)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i 371 (453)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 73
>PRK08508 biotin synthase; Provisional
Probab=99.77 E-value=1.5e-17 Score=163.18 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=138.8
Q ss_pred eCCCCCCCcccccccccc-C---ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 012929 198 INVGCLGACTYCKTKHAR-G---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (453)
Q Consensus 198 isrGC~~~CsFC~~~~~r-g---~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (453)
.++||+++|.||+.+... + .++.+++|+|+++++...+.|+++|.+++...+ +....-..+.++++.+.+..+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCC--
Confidence 488999999999997643 2 356689999999999999999999988643222 111111234566667665433
Q ss_pred CCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Q 012929 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353 (453)
Q Consensus 274 ~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I 353 (453)
+.. +... ...++++. +..+.. .++..+++++|+ ++++++.+.++++.++..+.++.+++. |+.+.+.+|
T Consensus 90 ~l~---i~~s-~G~~~~e~--l~~Lk~--aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~I 158 (279)
T PRK08508 90 GLH---LIAC-NGTASVEQ--LKELKK--AGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGGI 158 (279)
T ss_pred CcE---EEec-CCCCCHHH--HHHHHH--cCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeecceeE
Confidence 222 2111 12233332 455544 467899999999 578888888889999999999999999 999999999
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+|+ |||.||..+++.++++++++.+-++.|.|.||||+.
T Consensus 159 ~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~ 197 (279)
T PRK08508 159 FGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLK 197 (279)
T ss_pred Eec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCC
Confidence 997 999999999999999999999999999999999985
No 74
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.76 E-value=7.2e-18 Score=170.65 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=142.4
Q ss_pred EEEeCCCCCCCccccccccccC---ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg---~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
+|..|.||+++|+||.+....+ .++ +++|+|+++++...+.|++++.+++.+...+. ...+.++++.|.+.+|
T Consensus 51 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 51 HLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYP 126 (351)
T ss_pred CcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCC
Confidence 5788999999999999976544 233 69999999999999999999999875433221 1356788888877654
Q ss_pred CCCCceEEEEecCCc----------ChhHHHHHHHHHHhCCCCceeee-cccCCCCHHHHHhhcCC-CCHHHHHHHHHHH
Q 012929 272 PDGSTMLRIGMTNPP----------FILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTL 339 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~----------~i~~~l~~l~~l~~~~~~~~~l~-iglESgs~~vLk~m~R~-~t~e~~~~~i~~l 339 (453)
. +.+....|. ..+++. +..+.+ .++..++ .|+||+++++++.+.++ .+.+++.++++.+
T Consensus 127 --~---i~i~~~~~~ei~~~~~~~g~~~~e~--l~~Lke--AGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a 197 (351)
T TIGR03700 127 --D---LHVKAFTAVEIHHFSKISGLPTEEV--LDELKE--AGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTA 197 (351)
T ss_pred --C---ceEEeCCHHHHHHHHHHcCCCHHHH--HHHHHH--cCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 2 233322221 122222 444444 3455665 79999999999999986 5789999999999
Q ss_pred HHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC----CCCHhH
Q 012929 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGIQFL 393 (453)
Q Consensus 340 r~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~----pGT~~~ 393 (453)
+++ |+.+.+.+|+|+ |||.++..+.+..+++++.+..++..|.|. +|||+.
T Consensus 198 ~~~--Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~ 252 (351)
T TIGR03700 198 HEL--GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLN 252 (351)
T ss_pred HHc--CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCccc
Confidence 999 999999999998 999999999999999999988888899998 499986
No 75
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.75 E-value=6.4e-18 Score=170.57 Aligned_cols=187 Identities=18% Similarity=0.230 Sum_probs=137.2
Q ss_pred EEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.+.+|.||+++|+||.+....+. ...+++++|+++++.+.+.|+++|.|+|........ ..+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGL---DYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 46679999999999987654442 446899999999999999999999998754322211 235678888876432
Q ss_pred CCCceEEEEec------CCcChh-HHHHHHHHHHhCCCCceeee-cccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 012929 273 DGSTMLRIGMT------NPPFIL-EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 273 ~~~~~ir~~~~------~p~~i~-~~l~~l~~l~~~~~~~~~l~-iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~ 343 (453)
+..+..++.. ....+. ++. +..+.+ .++.+++ .|+|+.++++++.+.+ +.+.+++.++++.++++
T Consensus 120 -~i~~~~~s~~ei~~~~~~~g~~~~e~--l~~Lk~--aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~- 193 (340)
T TIGR03699 120 -HIHIHSFSPVEIVYIAKKEGLSLREV--LERLKE--AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL- 193 (340)
T ss_pred -CcCCCCCCHHHHHHHhccCCCCHHHH--HHHHHH--cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 2222111100 001111 222 444443 3456666 6899999999999965 57999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC----CCCHhH
Q 012929 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGIQFL 393 (453)
Q Consensus 344 pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~----pGT~~~ 393 (453)
|+.+.+++|+|+ |||.++..+++.++++++.+...+..|.|. +|||++
T Consensus 194 -Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~ 245 (340)
T TIGR03699 194 -GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELG 245 (340)
T ss_pred -CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCccc
Confidence 999999999996 999999999999999999887776666664 799987
No 76
>PLN02389 biotin synthase
Probab=99.74 E-value=1.6e-16 Score=161.44 Aligned_cols=186 Identities=15% Similarity=0.251 Sum_probs=141.0
Q ss_pred eEEEEEe-CCCCCCCcccccccccc--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHH
Q 012929 192 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNA 265 (453)
Q Consensus 192 ~~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~ 265 (453)
+.+.+.+ +.||+.+|.||...... + ++...++|+|+++++.+.+.|+++|.++..-.+..+.+.. ..+.++++.
T Consensus 82 ~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ 161 (379)
T PLN02389 82 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKE 161 (379)
T ss_pred EEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHH
Confidence 3455666 89999999999986432 2 2556899999999999999999999876321112222111 234455555
Q ss_pred HHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 012929 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 266 l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg 345 (453)
+.+ . + +.+. .....++++. +..+.. .++.++++.+++ +++..+.+..+.+.+++.+.++.+++. |
T Consensus 162 ik~-~---~---l~i~-~s~G~l~~E~--l~~Lke--AGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--G 226 (379)
T PLN02389 162 IRG-M---G---MEVC-CTLGMLEKEQ--AAQLKE--AGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--G 226 (379)
T ss_pred Hhc-C---C---cEEE-ECCCCCCHHH--HHHHHH--cCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--C
Confidence 542 1 2 2233 2333445443 555544 466889999999 788899998888999999999999999 9
Q ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEecccCCCCHhH
Q 012929 346 MQIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 346 i~v~~~~IvG~PgET~ed~~~tl~~i~~l--~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+.+|+|+ |||.+|..+++.+++++ .++.+.++.|.|.||||++
T Consensus 227 i~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~ 275 (379)
T PLN02389 227 ISVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLE 275 (379)
T ss_pred CeEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCC
Confidence 99999999999 99999999999999999 5789999999999999998
No 77
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.66 E-value=1.7e-15 Score=154.32 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=138.2
Q ss_pred EEEEEeCCCCCCCccccccccccC-ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
.+.|.+|.+|+++|.||..+...+ +.+..++++|+++++.+.+.|+++|.|++...... .+ ...+.++++.+.+.++
T Consensus 75 ~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p 152 (371)
T PRK09240 75 YTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS 152 (371)
T ss_pred EeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 445678999999999999875433 24678999999999999999999999987443221 11 1245666666655432
Q ss_pred CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCcE-
Q 012929 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~~lr~~~pgi~- 347 (453)
.+.+. ..| ++.+. +..+.+ .++.++++++||.+++.++.+. +.++.++..+.++.++++ |+.
T Consensus 153 -----~i~i~-~g~--lt~e~--l~~Lk~--aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 218 (371)
T PRK09240 153 -----SVSIE-VQP--LSEEE--YAELVE--LGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRK 218 (371)
T ss_pred -----Cceec-cCC--CCHHH--HHHHHH--cCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 12232 222 33332 454544 4568999999999999999995 578999999999999999 996
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCC------eEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~------~i~i~~~sp~pGT~~~ 393 (453)
+++++|+|+ ||+.+|..+++..+++++.. .+.+..|.|.|| |+.
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~ 268 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIE 268 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCC
Confidence 999999999 67999998888888888653 577788999999 765
No 78
>PRK15108 biotin synthase; Provisional
Probab=99.64 E-value=9.3e-15 Score=147.32 Aligned_cols=184 Identities=16% Similarity=0.230 Sum_probs=138.2
Q ss_pred EEEEEe-CCCCCCCcccccccccc--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 193 ~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
...+.+ |.+|+++|.||...... + +.+..++|+|++.++.+.+.|+++|.+.+.-......+ -..+.++++.+.
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik 121 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVK 121 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHH
Confidence 345566 99999999999986422 2 24557999999999999999999997753211111000 123456666665
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
+ . +.. +.++ ...++++. +.++.+ .++.++++.++| ++.....+..+++.++..+.++.+++. |+.
T Consensus 122 ~-~---~i~-v~~s---~G~ls~e~--l~~Lke--AGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~ 186 (345)
T PRK15108 122 A-M---GLE-TCMT---LGTLSESQ--AQRLAN--AGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIK 186 (345)
T ss_pred h-C---CCE-EEEe---CCcCCHHH--HHHHHH--cCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCc
Confidence 3 2 322 2222 22344333 455544 456899999999 899999888888999999999999999 999
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l--~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+.
T Consensus 187 v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~ 233 (345)
T PRK15108 187 VCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLA 233 (345)
T ss_pred eeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCC
Confidence 999999998 99999999999999999 6778899999999999987
No 79
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.61 E-value=2.7e-14 Score=142.91 Aligned_cols=195 Identities=20% Similarity=0.236 Sum_probs=143.5
Q ss_pred eEEEEEeCCCCCC-Cccccccc------ccc-C---------ccccCCHHHHHHHHHHHHHCCCc----EEEEeecCCCC
Q 012929 192 FVEILPINVGCLG-ACTYCKTK------HAR-G---------HLGSYTVESLVGRVRTVIADGVK----EVWLSSEDTGA 250 (453)
Q Consensus 192 ~~~~i~isrGC~~-~CsFC~~~------~~r-g---------~~rsr~~e~Iv~Ei~~l~~~G~~----eI~l~~~d~~~ 250 (453)
.+|...--.|||+ +|.||--. ... | +.+.-|..++...+++|...|-. |+.|.|.+|++
T Consensus 67 VVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta 146 (515)
T COG1243 67 VVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTA 146 (515)
T ss_pred EEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccC
Confidence 3444555689998 99999754 222 1 24566888999999999887642 67788888877
Q ss_pred CCCCcCCCHH-HHHHHHH----------HhCC--CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCH
Q 012929 251 YGRDIGVNLP-ILLNAIV----------AELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (453)
Q Consensus 251 yg~d~~~~l~-~Ll~~l~----------~~i~--~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~ 317 (453)
...+....|. ..++++. ..-. ......++++ +.|+.+.+.. +..|++. ++..+.+|+||..+
T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlky--G~TrVELGVQSiyd 221 (515)
T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKY--GVTRVELGVQSIYD 221 (515)
T ss_pred CCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhc--CCcEEEEeeeeHHH
Confidence 6443221221 2222222 1000 0012346776 8899988765 6777764 67899999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEecccCCCCHhH
Q 012929 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 318 ~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~---~~~i~i~~~sp~pGT~~~ 393 (453)
++|++++|+||.++..++.+.++++ |..+...+|.|+||-+.+--.+++..+-+.+ +|.+.+++-.-.+||+++
T Consensus 222 ~Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly 298 (515)
T COG1243 222 DVLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELY 298 (515)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHH
Confidence 9999999999999999999999999 9999999999999987765555555554444 999999999999999999
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.59 E-value=2.9e-14 Score=145.06 Aligned_cols=183 Identities=12% Similarity=0.159 Sum_probs=134.3
Q ss_pred EEEEEeCCCCCCCccccccccccC-ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
.+.+..|.+|+++|.||......+ +....++++|+++++.+.+.|+++|.+++...... .+ ...+.++++.+.+.++
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA-AG-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 445678999999999999864322 22456999999999999999999999986332221 10 1246667777765432
Q ss_pred CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCcE-
Q 012929 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 347 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~~lr~~~pgi~- 347 (453)
.+.+. +.| ++.+. +..+.. .+..++++++||.+++.++.|+ +.++.++..+.++.++++ |+.
T Consensus 152 -----~i~Ie-i~~--lt~e~--~~~Lk~--aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 217 (366)
T TIGR02351 152 -----SLAIE-VQP--LNEEE--YKKLVE--AGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRK 217 (366)
T ss_pred -----ccccc-ccc--CCHHH--HHHHHH--cCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 12222 222 34332 455544 3568999999999999999987 678999999999999999 997
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCC------CeEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~------~~i~i~~~sp~pGT~~~ 393 (453)
+++++|+|++ |+.++...+...++.+.. ..+.+..+.|.+| |+.
T Consensus 218 v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~ 267 (366)
T TIGR02351 218 IGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLK 267 (366)
T ss_pred eceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCC
Confidence 8999999995 577777777777666644 4677788999999 765
No 81
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.57 E-value=2.7e-14 Score=145.57 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=136.2
Q ss_pred EEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.|++|.+|+.+|.||.+....+ +....++|+|++.++.+.+.|++++.|++..-.... + ...+.++++.+.+.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 4677999999999999875432 222479999999999999999999999974322211 0 1235677777765443
Q ss_pred CCCceEEEEecCC----------cChhHHHHHHHHHHhCCCCceeee-cccCCCCHHHHHhhcCC-CCHHHHHHHHHHHH
Q 012929 273 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 340 (453)
Q Consensus 273 ~~~~~ir~~~~~p----------~~i~~~l~~l~~l~~~~~~~~~l~-iglESgs~~vLk~m~R~-~t~e~~~~~i~~lr 340 (453)
.+.+..+.+ ....++ .+..+.+ ++...++ .+-+..++++.+.+..+ .+.+++.++++.++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~e--~l~~Lke--AGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~ 211 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYEE--VLKALKD--AGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAH 211 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHHH--HHHHHHH--cCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 223322111 222222 2444444 3334554 45677788888888764 58999999999999
Q ss_pred HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCC----CCHhH
Q 012929 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GIQFL 393 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~p----GT~~~ 393 (453)
+. |+.+.+.+|+|+ |||.+|..+.+.++++++.+..++..|.|.| |||+.
T Consensus 212 ~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~ 265 (371)
T PRK07360 212 KL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLY 265 (371)
T ss_pred Hc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccc
Confidence 99 999999999998 9999999999999999999998888888865 99986
No 82
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.56 E-value=6.9e-14 Score=137.65 Aligned_cols=185 Identities=21% Similarity=0.330 Sum_probs=139.4
Q ss_pred eEEEEEeCCCC-CCCcccccccccc--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 192 FVEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 192 ~~~~i~isrGC-~~~CsFC~~~~~r--g--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
....|.+..|| |-+|.||...... | ++..+++++|+++++...+.|...+.++..--+ ++.+ ...+.+.++.+
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~-~~~i~~~v~~V 127 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD-MEEVVEAIKAV 127 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc-HHHHHHHHHHH
Confidence 34567777775 9999999987432 2 367789999999999999999666655542111 1211 13445555555
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi 346 (453)
.+.. + +.+. ++...++++. +.++.. .+..+....+|+ |++..+.+.-.+|.++-.+.++.++++ |+
T Consensus 128 k~~~---~---le~c-~slG~l~~eq--~~~L~~--aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi 193 (335)
T COG0502 128 KEEL---G---LEVC-ASLGMLTEEQ--AEKLAD--AGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GI 193 (335)
T ss_pred HHhc---C---cHHh-hccCCCCHHH--HHHHHH--cChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CC
Confidence 5333 2 2221 2222344433 444444 455788889999 999999999999999999999999999 99
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEecccCCCCHhH
Q 012929 347 QIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 347 ~v~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~i~i~~~sp~pGT~~~ 393 (453)
.+.+..|+|+ |||.+|-.+.+.++.++. ++.+-++.|.|.||||+.
T Consensus 194 ~vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle 240 (335)
T COG0502 194 EVCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLE 240 (335)
T ss_pred ccccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccc
Confidence 9999999999 999999999999999998 999999999999999999
No 83
>PRK05926 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=140.25 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=136.6
Q ss_pred EEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 012929 196 LPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (453)
Q Consensus 196 i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (453)
+..|..|+.+|.||++....+ .....++|+|+++++.. +.|+++|.+++.....+ + ...+.++++.|.+.+|
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~-~e~~~e~i~~Ik~~~p-- 145 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--N-LAYYEELFSKIKQNFP-- 145 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--C-HHHHHHHHHHHHHhCC--
Confidence 345999999999999765443 24567899999999998 68999999997433221 1 1346778888877654
Q ss_pred CCceEEEEecCCc----------ChhHHHHHHHHHHhCCCCceeeec-ccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHH
Q 012929 274 GSTMLRIGMTNPP----------FILEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIE 341 (453)
Q Consensus 274 ~~~~ir~~~~~p~----------~i~~~l~~l~~l~~~~~~~~~l~i-glESgs~~vLk~m~R-~~t~e~~~~~i~~lr~ 341 (453)
.+.+..+.+. ...++. +..+.+ .++..++. |.|+.++++.+.+.. +.+.+++.++++.+++
T Consensus 146 ---~i~i~a~s~~Ei~~~~~~~~~~~~e~--l~~Lke--AGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~ 218 (370)
T PRK05926 146 ---DLHIKALTAIEYAYLSKLDNLPVKEV--LQTLKI--AGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS 218 (370)
T ss_pred ---CeeEEECCHHHHHHHHhhcCCCHHHH--HHHHHH--cCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 3333322221 112221 444443 34456664 799999999998864 6688999999999999
Q ss_pred hCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc----CCCCHhH
Q 012929 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGIQFL 393 (453)
Q Consensus 342 ~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp----~pGT~~~ 393 (453)
+ |+.+++.+|+|+ |||.+|..+.+..+++++.+...+..|.| -++||+.
T Consensus 219 ~--Gi~~~sgmi~G~-gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~ 271 (370)
T PRK05926 219 L--GIPSNATMLCYH-RETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALG 271 (370)
T ss_pred c--CCcccCceEEeC-CCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCccc
Confidence 9 999999988885 99999999999999999999999999998 6677753
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.56 E-value=4.2e-13 Score=135.00 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=141.8
Q ss_pred EEEEEeCCCCCCCccccccccc---cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 193 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~---rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
+..|.++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|.+...+ .++.++++.+.+.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHhc
Confidence 4568999999999999987642 2456778999999999999888999999998766543 4678888887653
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc-EE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~v 348 (453)
. +...+.+. ++...+.+. +..+.. .++..|.++++|.+++..+.++++.+.+++.+.++.+++. |+ .+
T Consensus 93 -~--~~~~i~it-TNG~ll~~~---~~~L~~--agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 93 -P--GIRDLALT-TNGYLLARR---AAALKD--AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred -C--CCceEEEE-cCchhHHHH---HHHHHH--cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 2 33455554 555444433 333333 3457899999999999999999999999999999999998 76 66
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
...++ .+||.+++++.+.+++++++++ .+.+..|+|.++...+
T Consensus 162 ~i~~v-v~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~~ 204 (331)
T PRK00164 162 KVNAV-LMKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNEW 204 (331)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcch
Confidence 65554 4689999999999999999987 5788889998776443
No 85
>PRK08444 hypothetical protein; Provisional
Probab=99.54 E-value=1e-13 Score=139.71 Aligned_cols=184 Identities=14% Similarity=0.165 Sum_probs=139.4
Q ss_pred EEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
+|..|.-|..+|.||++....+ .....++|+|++.++...+.|+++|.+++..-..+. ...+.++++.|.+.+|
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCC-
Confidence 4677899999999999975433 113479999999999999999999999974322221 1246788888876554
Q ss_pred CCCceEEEEecCCcC---------h-hHHHHHHHHHHhCCCCceeeec-ccCCCCHHHHHhhcCCC-CHHHHHHHHHHHH
Q 012929 273 DGSTMLRIGMTNPPF---------I-LEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNREY-TLSDFRTVVDTLI 340 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~---------i-~~~l~~l~~l~~~~~~~~~l~i-glESgs~~vLk~m~R~~-t~e~~~~~i~~lr 340 (453)
.+.+....|.. + .++. +..|.+ . +...++- |.|..++++.+.+.... +.+++.++++.++
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~--l~~Lke-A-Gl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~ 199 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEV--LEDMLE-Y-GVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWH 199 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHH--HHHHHH-h-CcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHH
Confidence 23343222221 1 1111 343433 2 3344544 68999999999998754 6799999999999
Q ss_pred HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC----CCCHhH
Q 012929 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGIQFL 393 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~----pGT~~~ 393 (453)
++ |+.+++.+|+|+ |||.+|..+.+..+++++.+...+..|.|. +|||+.
T Consensus 200 ~~--Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~ 253 (353)
T PRK08444 200 KK--GKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLK 253 (353)
T ss_pred Hc--CCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCC
Confidence 99 999999999999 599999999999999999999999999999 999987
No 86
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.53 E-value=8.6e-13 Score=131.94 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=144.9
Q ss_pred ccceEEEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 012929 189 RNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (453)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (453)
+.+..+.+.+++||+.+|.||..+...|. ....+.+++.+-++.+.+. |+++|.|+|.|...... ..+.++++.
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~~ 161 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMAR 161 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHHH
Confidence 44567788999999999999998765453 2344667777777777755 99999999988776522 367888888
Q ss_pred HHHhCCCCCCceEEEEe----cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 012929 266 IVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341 (453)
Q Consensus 266 l~~~i~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~ 341 (453)
+.+ ++ ....+|+++ .+|..+++++ +..+.+. + + .+.+++++.+++-+ .++..++++.+++
T Consensus 162 l~~-i~--~v~~iri~Tr~~v~~p~rit~el--l~~L~~~-g-~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~ 225 (321)
T TIGR03822 162 LAA-ID--HVKIVRFHTRVPVADPARVTPAL--IAALKTS-G-K-TVYVALHANHAREL--------TAEARAACARLID 225 (321)
T ss_pred HHh-CC--CccEEEEeCCCcccChhhcCHHH--HHHHHHc-C-C-cEEEEecCCChhhc--------CHHHHHHHHHHHH
Confidence 875 44 456678875 2566677655 4444443 2 2 47799999876543 3789999999999
Q ss_pred hCCCcEEEE-EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 342 LVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 342 ~~pgi~v~~-~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
+ |+.+.. .+++.-.+++.+++.+.++++.++++...+++.+.|.+||..+ .++..++.+
T Consensus 226 ~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 226 A--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVR 288 (321)
T ss_pred c--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHH
Confidence 9 988766 4455556999999999999999999999999999999999777 444444433
No 87
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.52 E-value=3.8e-13 Score=139.73 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=136.4
Q ss_pred eEEEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCC-CCCCCCcCCCHHHHHHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~-~~yg~d~~~~l~~Ll~~l~~ 268 (453)
..+.|.+|..|+++|.||.+....+. ....++|+|+++++.+.+.|++++.+++... ..+.. ..+.++++.|.+
T Consensus 84 lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~ 160 (469)
T PRK09613 84 LFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYS 160 (469)
T ss_pred EEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHH
Confidence 34567789999999999999754432 3466999999999999999999999875332 22211 245667777765
Q ss_pred hCCCCC-CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCC
Q 012929 269 ELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVP 344 (453)
Q Consensus 269 ~i~~~~-~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R---~~t~e~~~~~i~~lr~~~p 344 (453)
.....+ ...+.+. ...++.+ ++..|.. .+..++++-.||.+.++++.++. +++.++-.+++++++++
T Consensus 161 ~~~~~g~i~~v~in---ig~lt~e--ey~~Lke--aGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a-- 231 (469)
T PRK09613 161 TKHGNGEIRRVNVN---IAPTTVE--NYKKLKE--AGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA-- 231 (469)
T ss_pred hccccCcceeeEEE---eecCCHH--HHHHHHH--cCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--
Confidence 321001 1223332 2224432 2555554 34578999999999999999865 57899999999999999
Q ss_pred CcE-EEEEEEEeCCCCCHHHHHHHHHHHHhc------CCCeEEEEecccCCCCHhH
Q 012929 345 GMQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 345 gi~-v~~~~IvG~PgET~ed~~~tl~~i~~l------~~~~i~i~~~sp~pGT~~~ 393 (453)
|+. +.+.+|+|++ |+.+|...++..++.| ++..+.+..|.|.+|||+.
T Consensus 232 Gi~~Vg~G~L~GLg-e~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~ 286 (469)
T PRK09613 232 GIDDVGIGVLFGLY-DYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLE 286 (469)
T ss_pred CCCeeCeEEEEcCC-CCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcc
Confidence 997 9999999995 5666666666666666 5667888899999999984
No 88
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.51 E-value=1.6e-12 Score=130.61 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=137.8
Q ss_pred EEEEEeCCCCCCCccccccccc--cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
+..|.++.+|+++|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|.....+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4467899999999999985421 1234567899999988888889999999998665443 467888888865 2
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc-EEE
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 349 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~v~ 349 (453)
. +...+.+. +|...+.+. +..+.. .+..++.++++|.+++..+.++++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~---~~~L~~--aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARF---AAELAD--AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHH---HHHHHH--cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 33355554 565545432 333333 3458999999999999999999988999999999999999 87 565
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
..+++ ++|++.+++.+.++++.+++++ +.+..|+|..+.
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~ 197 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEI 197 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCc
Confidence 55543 5899999999999999999986 557778997653
No 89
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.49 E-value=3.4e-12 Score=128.63 Aligned_cols=183 Identities=17% Similarity=0.259 Sum_probs=141.5
Q ss_pred EEEEEeCCCCCCCccccccccc----cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~----rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
+..|.++.+|+++|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|.+.... .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 4568899999999999987641 1234567899999999999889999999998666543 468888888765
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
.+ +...+.+. +|...+.+. +..+.+ .+..++.++++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~---~~~L~~--~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARH---AKDLKE--AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHH---HHHHHH--cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 32 44356664 466545443 333433 34578999999999999999985 56999999999999999 876
Q ss_pred -EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 348 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 -v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+...+++ .+|.+.+++.+.++++.++++. +.+..|+|..++..+
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGW 199 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccc
Confidence 6666544 4789999999999999999985 788889999887554
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.48 E-value=3.7e-12 Score=126.53 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=136.2
Q ss_pred EEEEEeCCCCCCCccccccccccCc-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
+..|.++.+|+.+|.||..+..... .+..+.+++.+.++.+...|++.|.|+|...+.. .++.++++.+.+.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~~-- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKDY-- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHhC--
Confidence 4578999999999999987643222 3568999998888888888999999998766543 4578888887542
Q ss_pred CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EEE
Q 012929 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 350 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~~ 350 (453)
+...+.+. +|...+.+. +..+.. .++.++.++++|.+++..+.++++.+.+++.+.++.++++ |+. +..
T Consensus 84 --g~~~v~i~-TNG~ll~~~---~~~l~~--~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 84 --GIKDVSMT-TNGILLEKL---AKKLKE--AGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred --CCceEEEE-cCchHHHHH---HHHHHH--CCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 33345554 455434332 333433 3457899999999999999999988999999999999999 875 655
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCC
Q 012929 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (453)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pG 389 (453)
.++ .+||++.+++.+.++++.+++++ +++..|+|...
T Consensus 154 ~~v-~~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~ 190 (302)
T TIGR02668 154 NMV-VLKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGE 190 (302)
T ss_pred EEE-EeCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCC
Confidence 544 46899999999999999999985 78888888654
No 91
>PTZ00413 lipoate synthase; Provisional
Probab=99.48 E-value=3e-12 Score=127.24 Aligned_cols=181 Identities=17% Similarity=0.233 Sum_probs=136.8
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i 270 (453)
...|+..+..|+.+|.||.+.... +.-..+++++++-++...+.|++.+++++.+-... .|.+ ..+.+.+++|.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccC
Confidence 344666788999999999997533 24566899999999999999999988887532111 1111 35666777775432
Q ss_pred CCCCCceEEEEecCCcCh-hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHh-CCCcE
Q 012929 271 PPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQ 347 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~-~pgi~ 347 (453)
..+.+..+-|+.. +. +.+..++. .+...++-.||| +++.+..++. +++.++.+++|+.+++. .+|+.
T Consensus 227 -----p~~~IevligDf~g~~--e~l~~L~e--AG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~ 296 (398)
T PTZ00413 227 -----PELLLEALVGDFHGDL--KSVEKLAN--SPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAML 296 (398)
T ss_pred -----CCCeEEEcCCccccCH--HHHHHHHh--cCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCce
Confidence 2345554555432 22 22555544 455789999999 9999999996 68999999999999988 47899
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecc
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~s 385 (453)
+.+.+|+| +|||++|+.++++.+.+++++.+.+.+|-
T Consensus 297 tcSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 297 TKSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred EeeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 99999999 59999999999999999999999996664
No 92
>PRK05927 hypothetical protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=135.29 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=135.0
Q ss_pred EEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.|.+|.-|+.+|.||.+....+. ....++++|++.++...+.|++++.|++..-..++. ..+.++++.|.+..+
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 35678999999999999753332 226799999999999999999999998654332221 245677888776554
Q ss_pred CCCceEEE-----E--ecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCC
Q 012929 273 DGSTMLRI-----G--MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVP 344 (453)
Q Consensus 273 ~~~~~ir~-----~--~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~p 344 (453)
+..---+ . ........++. +..+.+ .+.-...+.++|+.++.+-+.+.. +++.+++.+.++.+++.
T Consensus 124 -~l~~~~~s~~ei~~~~~~~G~~~~e~--l~~Lk~-aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l-- 197 (350)
T PRK05927 124 -SLHPHFFSAVEIAHAAQVSGISTEQA--LERLWD-AGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL-- 197 (350)
T ss_pred -CCcccCCCHHHHHHHHHhcCCCHHHH--HHHHHH-cCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc--
Confidence 2210000 0 00112223322 444444 333233445899999999988877 44789999999999999
Q ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC----CCCHhH
Q 012929 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGIQFL 393 (453)
Q Consensus 345 gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~----pGT~~~ 393 (453)
|+.+++.+|+|+ |||.+|..+.+..+++++-+..++..|.|. +|||+.
T Consensus 198 Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~ 249 (350)
T PRK05927 198 GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALG 249 (350)
T ss_pred CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccc
Confidence 999999999999 999999999999999998666677667776 678875
No 93
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.43 E-value=1.9e-12 Score=143.05 Aligned_cols=184 Identities=13% Similarity=0.255 Sum_probs=133.2
Q ss_pred EEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.|..|.+|+.+|.||++....+ ....+++|+|+++++...+.|+++|.+++..-..+. ...+.++++.|.+..+
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p- 604 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVP- 604 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCC-
Confidence 4667999999999999975432 244579999999999999999999999864222111 1356778888877654
Q ss_pred CCCceEEEEecCCcC----------hhHHHHHHHHHHhCCCCceeeec-ccCCCCHHHHHhhcC-CCCHHHHHHHHHHHH
Q 012929 273 DGSTMLRIGMTNPPF----------ILEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNR-EYTLSDFRTVVDTLI 340 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~----------i~~~l~~l~~l~~~~~~~~~l~i-glESgs~~vLk~m~R-~~t~e~~~~~i~~lr 340 (453)
+. .+....|.. ..++. +..+.+ .++..++- +-|-.++++.+.+.+ +.+.+++.++++.++
T Consensus 605 -~i---~i~afsp~Ei~~~a~~~Gl~~~e~--l~~Lke--AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah 676 (843)
T PRK09234 605 -SM---HVHAFSPMEIVNGAARLGLSIREW--LTALRE--AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAH 676 (843)
T ss_pred -Ce---eEEecChHHHHHHHHHcCCCHHHH--HHHHHH--hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence 32 332122211 11222 344443 33455543 455566666656654 458899999999999
Q ss_pred HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc----CCCCHhH
Q 012929 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGIQFL 393 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp----~pGT~~~ 393 (453)
+. |+.+++.+|+|+ +||.+++.+.+.++++++.+..++..|.| -|+||++
T Consensus 677 ~l--Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 677 EV--GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred Hc--CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 99 999999999998 79999999999999999998888888888 6778774
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.40 E-value=5.5e-11 Score=121.28 Aligned_cols=183 Identities=17% Similarity=0.258 Sum_probs=137.0
Q ss_pred EEEEEeCCCCCCCcccccccccc---CccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 193 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~r---g~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
+..|.++.+|+.+|.||..+... .+....+.+++.+.++.+.+.|++.|.|+|.....+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 44688999999999999764211 123457889999999888888999999998554433 357888888765
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc-EE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 348 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~v 348 (453)
++ +...+.+. +|...+.+. +.++.. .+...+.+.++|.+++..+.+.++...+++.+.|+.+++. |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~---~~~L~~--aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRK---LPRLKE--AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHH---HHHHHh--CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 33 44445553 455444443 334443 3457899999999999999998877789999999999998 75 34
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
...+ +-++|.+.+++.+.++++++.++ .+.+..|+|..|++..
T Consensus 203 kin~-vv~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~ 245 (373)
T PLN02951 203 KVNC-VVMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWN 245 (373)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccc
Confidence 4333 44578899999999999999885 5888999999999643
No 95
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.35 E-value=1.9e-10 Score=115.93 Aligned_cols=193 Identities=20% Similarity=0.299 Sum_probs=133.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
....+|.++.||+.+|.||.... .|..|..++++|++++..+... ++++|+|+| .|.+. .++.++++.+..
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG-----~GEPl-~n~~~vi~~l~~- 173 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMG-----MGEPL-ANLDNVIPALQI- 173 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEec-----CCcch-hcHHHHHHHHHH-
Confidence 35678999999999999998764 3557889999999999887654 789999987 23332 244455544432
Q ss_pred CCC-CC----CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 012929 270 LPP-DG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (453)
Q Consensus 270 i~~-~~----~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~~lr~ 341 (453)
+.. .+ ...++++ ++. +.+. +.+++... -..+.+.+.|.+++..+.+ +|+++.+++.+++.....
T Consensus 174 l~~~~gl~~s~r~itVs-TnG--l~~~---i~~l~~~~--~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~ 245 (349)
T PRK14463 174 LTDPDGLQFSTRKVTVS-TSG--LVPE---MEELGREV--TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPL 245 (349)
T ss_pred hhcccccCcCCceEEEE-CCC--chHH---HHHHhhcc--CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 210 01 1345554 222 3333 34444322 2367789999999999987 889999999998887776
Q ss_pred hC-CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 342 LV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 342 ~~-pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
.. ..+.+..- +++-.+++++++.+..++++.++. .+++-+|.|.+|.... +++...+.
T Consensus 246 ~~~~~v~ieyv-LI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~~~~~ps~e~i~~f~ 307 (349)
T PRK14463 246 PGRRKITIEYV-MIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGCDFRSPTQEAIDRFH 307 (349)
T ss_pred hcCCeEEEEEE-EeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCCCCCCCCHHHHHHHH
Confidence 52 12445544 444469999999999999999875 8999999999886443 45544443
No 96
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.33 E-value=2.1e-11 Score=134.97 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=132.3
Q ss_pred EEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CCC
Q 012929 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 258 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg------------~d~-~~~ 258 (453)
.+|..|..|..+|.||.+....+ .....++|+|++.++...+.|++++.|++.+-.... .+. -..
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 36778999999999999975444 355679999999999999999999988865433211 100 013
Q ss_pred HHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---c---CCCCHHHH
Q 012929 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---N---REYTLSDF 332 (453)
Q Consensus 259 l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~---R~~t~e~~ 332 (453)
+.++++.+.+... -... +++..++.. ++..+.... . .+++.+|+.+++..+.. + .+...++.
T Consensus 153 ~~~~~~~ik~~~g--l~p~-----i~~G~ls~~--E~~~Lk~~g--~-s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETG--LLPH-----LNPGVMSWS--ELARLKPVA--P-SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcC--CCce-----eeeCCCCHH--HHHHHHHhc--C-cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 4445555544321 0112 233334442 245444432 1 24577888888775432 2 23356788
Q ss_pred HHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc-----CCCeEEEEecccCCCCHhH
Q 012929 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 333 ~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l-----~~~~i~i~~~sp~pGT~~~ 393 (453)
++.++.+++. |+.+++.+|+|+ |||.+|..+.+..++++ ++..+-+..|.|.||||+.
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~ 283 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMA 283 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCC
Confidence 9999999999 999999999999 99999999999999999 5778889999999999987
No 97
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.32 E-value=1.2e-10 Score=111.40 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=119.8
Q ss_pred EEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCC---CcEEEEeecCCCCCCCCcCCC-HHHHHHHHH
Q 012929 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVN-LPILLNAIV 267 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G---~~eI~l~~~d~~~yg~d~~~~-l~~Ll~~l~ 267 (453)
..+-++.|||++|.||..+..+. ..+..+++++++++..+...+ ...|.|+|.+.+.+ .+ +.++++.+.
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~-----~~~~~~li~~~~ 91 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQ-----PEFLSELFKACK 91 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccC-----HHHHHHHHHHHH
Confidence 34567889999999998764332 245689999999999876542 25788888666554 22 346666665
Q ss_pred HhCCCCCCceEEEEecCCcC--hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 012929 268 AELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~--i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg 345 (453)
+. +. .+.+. ++... +.+. +.+++.. ...+.+++++.+++..+.+++. +.+.+.+.++.+++. |
T Consensus 92 ~~----g~-~~~i~-TNG~~~~~~~~---~~~ll~~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g 156 (235)
T TIGR02493 92 EL----GI-HTCLD-TSGFLGGCTEA---ADELLEY---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--N 156 (235)
T ss_pred HC----CC-CEEEE-cCCCCCccHHH---HHHHHHh---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--C
Confidence 42 32 23443 33321 2333 3333332 3568899999999998887655 788999999999998 8
Q ss_pred cEEEEEEEEeCCC--CCHHHHHHHHHHHHhcC-CCeEEEEeccc
Q 012929 346 MQIATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYP 386 (453)
Q Consensus 346 i~v~~~~IvG~Pg--ET~ed~~~tl~~i~~l~-~~~i~i~~~sp 386 (453)
+.+...+++. || ++.+++++.++++.+++ ...+++.+|.|
T Consensus 157 ~~~~v~~vv~-~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~ 199 (235)
T TIGR02493 157 KPIWIRYVLV-PGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQ 199 (235)
T ss_pred CcEEEEEeee-CCcCCCHHHHHHHHHHHHhCCCCceEEecCCCc
Confidence 7776665553 65 67899999999999998 56777777776
No 98
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.32 E-value=2.6e-10 Score=115.36 Aligned_cols=188 Identities=19% Similarity=0.279 Sum_probs=128.8
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHH---H---CCCcEEEEeecCCCCCCCCcC--CCHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI---A---DGVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~---~---~G~~eI~l~~~d~~~yg~d~~--~~l~~L 262 (453)
....+|.++.||+.+|.||..+.. |..|..++++|++++.... . .|+..|+|.| .|...- ..+.++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~G-----mGEPLln~~~v~~~ 181 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMG-----IGEPFDNYDNVMDF 181 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEec-----cccccCCHHHHHHH
Confidence 345789999999999999999864 5588999999999998642 1 3678888887 233221 245566
Q ss_pred HHHHHHhCC-CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHh---hcCCCCHHHHHHHHHH
Q 012929 263 LNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDT 338 (453)
Q Consensus 263 l~~l~~~i~-~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~---m~R~~t~e~~~~~i~~ 338 (453)
++.+.+... ..+...+.+++ + .+.+. +..++..... ..|.+.+.+.+++..+. ++|+++.+++.+.++.
T Consensus 182 l~~l~~~~g~~~s~r~itvsT-~--G~~~~---i~~l~d~~l~-~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~ 254 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVST-S--GIAPK---IYDFADEGLQ-INLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEY 254 (356)
T ss_pred HHHHhcccCcccCCCceEEEe-c--CchHh---HHHHHhcccC-eeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 666643210 00112444542 1 12232 3334433222 34679999999999975 5788999999999998
Q ss_pred HHHhC-CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 339 LIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 339 lr~~~-pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.. ..+.+. +++++-.+++++++++..+|++.++ ..+++-+|.|.++.+..
T Consensus 255 ~~~~~~~~v~ie-y~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky~ 308 (356)
T PRK14455 255 YIEKTNRRVTFE-YILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDYV 308 (356)
T ss_pred HHHhcCCeEEEE-EEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCCc
Confidence 87641 224444 4555546999999999999999987 57999999999987544
No 99
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.30 E-value=5.9e-10 Score=111.36 Aligned_cols=195 Identities=14% Similarity=0.267 Sum_probs=137.5
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
....+|.++-||+.+|.||..+.. |..|..++++|++++..+.+. ++..|+|+| .|... .++.++++.+...
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmG-----mGEPL-~N~d~vi~al~~l 174 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMG-----MGEPL-DNLDEVLKALEIL 174 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEee-----eCcCc-ccHHHHHHHHHHH
Confidence 456789999999999999998764 656789999999999987543 689999987 23332 2445555555431
Q ss_pred CCCCC----CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHh
Q 012929 270 LPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 270 i~~~~----~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~~lr~~ 342 (453)
....+ ...+.+++.- +.+.+ .+++.... ..+.+.+-|.+++..+.+. +.|+.+++.++++...+.
T Consensus 175 ~~~~g~~~s~r~ItVsT~G---~~~~i---~~l~~~~~--~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~ 246 (345)
T PRK14466 175 TAPYGYGWSPKRITVSTVG---LKKGL---KRFLEESE--CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFS 246 (345)
T ss_pred hhccccCcCCceEEEEcCC---CchHH---HHHhhccC--cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHh
Confidence 10001 2355555322 33322 22222222 3677899999999997775 468899999999987765
Q ss_pred CCC-cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 343 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 343 ~pg-i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
..+ +.+..-+|=|+ .++.++..+..++++.++ .++++-+|.|.||.+.. .++...+.+
T Consensus 247 ~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~~~~~s~~~~~~F~~ 308 (345)
T PRK14466 247 KQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVDLEGSDMARMEAFRD 308 (345)
T ss_pred hCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCCCcCCCHHHHHHHHH
Confidence 333 77888888887 999999999999999887 68999999999997544 555544443
No 100
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.26 E-value=8.4e-10 Score=111.85 Aligned_cols=197 Identities=14% Similarity=0.239 Sum_probs=134.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHH--------HHCCCcEEEEeecCCCCCCCCcC--CCHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSSEDTGAYGRDIG--VNLP 260 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l--------~~~G~~eI~l~~~d~~~yg~d~~--~~l~ 260 (453)
...+.|.++-||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|.| +|...- .++.
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v~ 193 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNVF 193 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHHH
Confidence 456789999999999999998753 556788999999998543 134789999987 243321 2366
Q ss_pred HHHHHHHHhCCCC--CCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh----cCCCCHHHHHH
Q 012929 261 ILLNAIVAELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----NREYTLSDFRT 334 (453)
Q Consensus 261 ~Ll~~l~~~i~~~--~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m----~R~~t~e~~~~ 334 (453)
++++.+.+.-... +...+.+++ + .+.+. +.+++.. +.-..|.+.+.|.+++..+.+ +++++.+++.+
T Consensus 194 ~~i~~l~~~~~~~~is~r~ItisT-~--Gl~~~---i~~L~~~-gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~ 266 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITIST-V--GITPE---IDRLATS-GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELRE 266 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEEC-C--CChHH---HHHHHHc-CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHH
Confidence 6666665420000 123455542 2 24443 3444443 221379999999999999866 35889999999
Q ss_pred HHHH-HHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 335 VVDT-LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 335 ~i~~-lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
+++. +++....+.+..-+|-|+ .++++++.+..+|++.+. -.+++-+|.|.++.+.. +++...+.+
T Consensus 267 ~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~~~ps~e~i~~F~~ 336 (368)
T PRK14456 267 ALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKFEPVCSSTRERFRD 336 (368)
T ss_pred HHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCCCCCCHHHHHHHHH
Confidence 9985 444411256777777776 799999999999999985 46888888888777654 555554443
No 101
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.26 E-value=3e-10 Score=114.01 Aligned_cols=191 Identities=15% Similarity=0.224 Sum_probs=134.6
Q ss_pred ccceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
+.+.++.+.++.||+.+|+||..+...+.....+.+++.+.++.+.+. |+++|.|+|.|...... ..+.++++.+.
T Consensus 110 ky~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~ 186 (331)
T TIGR00238 110 RYVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLE 186 (331)
T ss_pred ecCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHH
Confidence 345567899999999999999986544332333367777777777654 89999999988765421 23778888887
Q ss_pred HhCCCCCCceEEEEecC----CcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 268 AELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~----p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
+ ++ ....+|+++.. |..+++++ .++++.. ++..+.+..-...+++ .++..++++.++++
T Consensus 187 ~-i~--~~~~IRi~tr~~~~~P~rit~el---~~~L~~~-~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a- 249 (331)
T TIGR00238 187 E-IP--HLVRLRIGTRLPVVIPQRITDEL---CELLASF-ELQLMLVTHINHCNEI---------TEEFAEAMKKLRTV- 249 (331)
T ss_pred h-cC--CccEEEeecCCCccCchhcCHHH---HHHHHhc-CCcEEEEccCCChHhC---------CHHHHHHHHHHHHc-
Confidence 5 55 66788988643 44466655 3333332 2344445544433332 27788999999999
Q ss_pred CCcE--EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 344 PGMQ--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 344 pgi~--v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
|+. +.+-++-|. .++.+++.+..+.+.++++...+++.+.|..|+.-+ .++...+.
T Consensus 250 -Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~~~~~~~i~ 310 (331)
T TIGR00238 250 -NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVPDAEAAQIV 310 (331)
T ss_pred -CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCCHHHHHHHH
Confidence 865 556777776 788999999999999999999999999999998655 55555554
No 102
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.23 E-value=1.6e-09 Score=111.05 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=134.8
Q ss_pred cceEEEEEeCCCCCCCcccccccccc-CccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~r-g~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
.+....+.++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|.+.+.+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 35667899999999999999865322 234567888888888888888999999998766554 457788887764
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCcE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~-~t~e~~~~~i~~lr~~~pgi~ 347 (453)
. + ..+.+ .+|...++++. +..+... +...+.+++++.++++.+.+++. .+.+...+.++.+++. |+.
T Consensus 89 ~----g-~~~~i-~TNG~ll~~~~--~~~L~~~--g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~ 156 (378)
T PRK05301 89 L----G-LYTNL-ITSGVGLTEAR--LAALKDA--GLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYP 156 (378)
T ss_pred c----C-CcEEE-ECCCccCCHHH--HHHHHHc--CCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCc
Confidence 2 3 23334 36766677654 4444442 34689999999999999888665 4899999999999999 877
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp 386 (453)
+...+ .++..+.+++.+.++++.+++++.+.+..+.+
T Consensus 157 v~i~~--vv~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 157 LTLNA--VIHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred eEEEE--EeecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 65544 44688999999999999999999888766544
No 103
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.20 E-value=3e-09 Score=98.44 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=112.8
Q ss_pred EEEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 193 VEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.+++.+++|||++|.||..+...+ .....++++++++++... ..++.|.|+|.+...+ .++.++++.+.+.
T Consensus 17 ~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~-----~~l~~li~~~~~~- 89 (191)
T TIGR02495 17 LAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQ-----AGLPDFLRKVREL- 89 (191)
T ss_pred eEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECCcccCc-----HhHHHHHHHHHHC-
Confidence 456788999999999999874322 245689999999998752 3467888988666554 3478888888652
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHH-HHHHHHHHHHHhCCCc--E
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM--Q 347 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e-~~~~~i~~lr~~~pgi--~ 347 (453)
+ ..+.+. ++.. .+.. +.+++.. +...++.+++++.++...+.++++...+ ++.+.++.+++. |+ .
T Consensus 90 ---g-~~v~i~-TNg~--~~~~--l~~l~~~-g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~~~ 157 (191)
T TIGR02495 90 ---G-FEVKLD-TNGS--NPRV--LEELLEE-GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIPFE 157 (191)
T ss_pred ---C-CeEEEE-eCCC--CHHH--HHHHHhc-CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCCEE
Confidence 3 344444 3332 2222 4445443 3347899999986666667777665554 899999999998 65 4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
+.+.++-|+.. ++++.+..+++.+++
T Consensus 158 i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 158 LRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 55555556543 678999999999887
No 104
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.20 E-value=2.3e-09 Score=109.03 Aligned_cols=175 Identities=12% Similarity=0.139 Sum_probs=130.7
Q ss_pred ceEEEEEeCCCCCCCccccccccccC-ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
+....+.++..|+.+|.||..+.... +....+.+++.+-++.+.+.|+..|.|+|.+.+.+ .++.++++.+.+.
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~~ 80 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARRL 80 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHHc
Confidence 35568999999999999998753222 23456888888878888788999999998766653 4678888887652
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCcEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~-~t~e~~~~~i~~lr~~~pgi~v 348 (453)
+ ..+.+. +|...++++. +..+.. .++..|.+++++.++++.+.+++. .+.+.+.+.++.+++. |+.+
T Consensus 81 ----g-~~~~l~-TNG~ll~~e~--~~~L~~--~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 81 ----G-LYTNLI-TSGVGLTEAR--LDALAD--AGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred ----C-CeEEEE-eCCccCCHHH--HHHHHh--CCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 3 234443 5666666654 444444 345689999999999999888653 4688999999999998 8776
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~ 384 (453)
...+ -+..++.+++.+.++++.+++++.+.+...
T Consensus 149 ~v~~--vv~~~N~~~l~~~~~~~~~lg~~~i~~~~~ 182 (358)
T TIGR02109 149 TLNF--VIHRHNIDQIPEIIELAIELGADRVELATT 182 (358)
T ss_pred EEEE--EeccCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 5444 446889999999999999999998877543
No 105
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-09 Score=103.49 Aligned_cols=181 Identities=19% Similarity=0.274 Sum_probs=134.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHh
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAE 269 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~ 269 (453)
....|+..+.=|..+|.||.+.. |+.-..++++-.+-++.....|.+++++++.|-... .|.+ ..|.+.+++|.+.
T Consensus 69 ~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL-~DGGA~hfa~~i~~Ire~ 145 (306)
T COG0320 69 GTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL-PDGGAQHFAECIRAIREL 145 (306)
T ss_pred CceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccc-cccchHHHHHHHHHHHhh
Confidence 44456667888999999999976 555556666666666666677999999997543222 1112 5789999999875
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhC-CCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~-~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
.| .+.+..+-|+..- ..+.+..++.. +.+ +.-.+|+. +++....+++.+.+.-+++++.+++..|.+..
T Consensus 146 ~P-----~t~iEvL~PDF~G-~~~al~~v~~~~pdV---~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T 215 (306)
T COG0320 146 NP-----QTTIEVLTPDFRG-NDDALEIVADAGPDV---FNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPT 215 (306)
T ss_pred CC-----CceEEEeCccccC-CHHHHHHHHhcCcch---hhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCccc
Confidence 43 3456656666432 22334444443 333 33456664 45667788899999999999999999888999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecc
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~s 385 (453)
.+.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.
T Consensus 216 KSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 216 KSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred ccceeeec-CCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 99999999 9999999999999999999999999986
No 106
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.15 E-value=7.5e-09 Score=104.15 Aligned_cols=196 Identities=15% Similarity=0.272 Sum_probs=132.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (453)
....+|.++-||+.+|.||..+.. |..|..++++|++++..+.+. ++..|+|.| .|...- ..+.+.++.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmG-----mGEPlln~~~v~~~i~~ 173 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMG-----MGEPLLNIDEVLAAIRC 173 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 456789999999999999988653 556778999999999877543 578899987 233221 123344444
Q ss_pred HHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCC-----CCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHH
Q 012929 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP-----CVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (453)
Q Consensus 266 l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~-----~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~ 337 (453)
+.+.+. .+...+.++++- +.+..+++ +... ..-..+.+.+-+.+++..+.+ ++.++.+++.+.+.
T Consensus 174 l~~~~~-i~~r~itvST~G---~~~~i~~L---~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~ 246 (345)
T PRK14457 174 LNQDLG-IGQRRITVSTVG---VPKTIPQL---AELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCR 246 (345)
T ss_pred HhcccC-CccCceEEECCC---chhhHHHH---HhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHH
Confidence 432111 022356665432 22222223 2221 011257788999999999877 45788888887776
Q ss_pred H-HHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 338 T-LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 338 ~-lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
. +.+.-..+.+..-+|=|+ .+++|++++..+|++.++. ++++-+|-|.++.+.. +++...+.
T Consensus 247 ~y~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~~~ps~e~i~~f~ 312 (345)
T PRK14457 247 HYVAITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEFQRPSPKRIQAFQ 312 (345)
T ss_pred HHHHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 5 444422388888899888 8999999999999999964 8999999999887654 44444433
No 107
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=1.1e-08 Score=102.52 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (453)
+....|.++.||+.+|.||..... |-.|..++++|++++....+. .++.|+|.| .|...- ..+.++++.
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-----mGEPllN~d~v~~~i~~ 169 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMG-----QGEPFLNYDEVLRAAYA 169 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 456789999999999999998753 446778999999999876543 578899988 243321 134455555
Q ss_pred HHHhCC-CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 012929 266 IVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (453)
Q Consensus 266 l~~~i~-~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~~lr~ 341 (453)
+..... ..+...+.+++ +. +.+. +.+++..... ..|.+.+.+.+++..+.+ +++++.+++.+.++.+.+
T Consensus 170 l~~~~~~~~~~~~ItVsT-nG--~~p~---i~~l~~~~~~-~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~ 242 (336)
T PRK14470 170 LCDPAGARIDGRRISIST-AG--VVPM---IRRYTAEGHK-FRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAA 242 (336)
T ss_pred HhCccccccCCCceEEEe-cC--ChHH---HHHHHhcCCC-ceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHH
Confidence 432100 00134555553 22 2233 3344443322 469999999999999887 446889999999999988
Q ss_pred hCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCC
Q 012929 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (453)
Q Consensus 342 ~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pG 389 (453)
....+.+..-+|-|+ .+++++.++..++++.+.. ++++-+|.|.+|
T Consensus 243 ~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 243 LRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred hCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 733377778888888 6899999999999998754 788889999666
No 108
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=5.2e-09 Score=105.79 Aligned_cols=189 Identities=15% Similarity=0.242 Sum_probs=129.5
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH---C------C--CcEEEEeecCCCCCCCCcC--C
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG--V 257 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~---~------G--~~eI~l~~~d~~~yg~d~~--~ 257 (453)
.....|.++-||+.+|.||..+. .|..|..++++|++++..+.+ . | ++.|+|.| .|.... .
T Consensus 120 ~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d 193 (373)
T PRK14459 120 RATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYK 193 (373)
T ss_pred CceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHH
Confidence 35578999999999999999764 355789999999999987653 1 1 67799977 233221 2
Q ss_pred CHHHHHHHHHHhCCC-CCC--ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHH
Q 012929 258 NLPILLNAIVAELPP-DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSD 331 (453)
Q Consensus 258 ~l~~Ll~~l~~~i~~-~~~--~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~ 331 (453)
.+.+.++.+.+..+. .++ ..+.+++. .+.+. +.+++....- ..|.+.+-|.+++..+.+ +|.|+.++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~---Gl~~~---i~~la~~~l~-~~LavSLha~d~e~R~~l~p~n~~~~l~~ 266 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTV---GLVPA---IRKLADEGLP-VTLAVSLHAPDDELRDELVPVNTRWKVDE 266 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECc---CchhH---HHHHHHhcCC-eEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 344555555431010 122 24444432 23333 2334333211 258899999999999655 36799999
Q ss_pred HHHHHHHHH-HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEecccCCCCHhH
Q 012929 332 FRTVVDTLI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 332 ~~~~i~~lr-~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~--~~~i~i~~~sp~pGT~~~ 393 (453)
+.+++.... +.--.+.+..-+|=|+ .+++++..+..++++.++ ..++++-+|.|.+|.+..
T Consensus 267 ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~ 330 (373)
T PRK14459 267 VLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT 330 (373)
T ss_pred HHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc
Confidence 999977666 4411266777777787 899999999999999985 468999999999998665
No 109
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=6.8e-09 Score=104.51 Aligned_cols=194 Identities=16% Similarity=0.279 Sum_probs=130.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcC--CCHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~----~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~ 264 (453)
....+|.++.||+.+|.||..+. .|..|..+.++|++++..... .++..|+|.| +|.... ..+.++++
T Consensus 98 ~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l~ 171 (348)
T PRK14467 98 HLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAVQ 171 (348)
T ss_pred CcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHHH
Confidence 45679999999999999999874 355689999999999987654 2578898887 343321 23344455
Q ss_pred HHHHhCCCCCC----ceEEEEecCCcChhHHHHHHHHHHhCC--CCceeeecccCCCCHHHHHhhc---CCCCHHHHHHH
Q 012929 265 AIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHP--CVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTV 335 (453)
Q Consensus 265 ~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~--~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~ 335 (453)
.+.+. .+. ..+++++.- +.+.+ .+++... ..+ .+.+.+-+.+++..+.+- +.++.+++.++
T Consensus 172 ~l~~~---~gl~~~~r~itvsT~G---~~~~i---~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~ 241 (348)
T PRK14467 172 IMTSP---WGLDLSKRRITISTSG---IIHQI---KRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEV 241 (348)
T ss_pred HHcCh---hccCcCCCcEEEECCC---ChhHH---HHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHH
Confidence 44321 022 256665332 22222 2222211 122 456899999999997664 45788888888
Q ss_pred HHHHHH-hCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 336 VDTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 336 i~~lr~-~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
++.... ....+.+..-+|=|+ .+++++.++..+|++.++ ..++++-+|-|+|+.+.- +++...+.
T Consensus 242 ~~~~~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~ 311 (348)
T PRK14467 242 LKQYPLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQ 311 (348)
T ss_pred HHHHHHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 876553 323477777777776 799999999999999985 568999999999997655 44444433
No 110
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.14 E-value=1.2e-08 Score=106.30 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=128.0
Q ss_pred eEEEEEeCCCCCCCccccccccc-----c-C-ccccCCHHHHHHHHHHHHHC--CCcEEEEee-cCCCCCCCCcCCCHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHA-----R-G-HLGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLPI 261 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~-----r-g-~~rsr~~e~Iv~Ei~~l~~~--G~~eI~l~~-~d~~~yg~d~~~~l~~ 261 (453)
-+..+.++.||+.+|.||...+. + | ..+..+++++++.++.+.+. +...|.|.| .+...+. ....+
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~----e~~~~ 99 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI----GKTFQ 99 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc----cccHH
Confidence 34578999999999999986532 1 2 23567999999999988764 566788877 4433321 23456
Q ss_pred HHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh-------cCCCC------
Q 012929 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT------ 328 (453)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m-------~R~~t------ 328 (453)
+++.+.+..+ + ..+.++ ++...+.+. +.+++.. +..+|.+.+-+.++++.+.+ +|.++
T Consensus 100 ~l~~~~~~~~--~-i~i~ls-TNG~~l~e~---i~~L~~~--gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 100 TLELVARQLP--D-VKLCLS-TNGLMLPEH---VDRLVDL--GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred HHHHHHHhcC--C-CeEEEE-CCCCCCHHH---HHHHHHC--CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHH
Confidence 7777766543 2 344554 454333333 3444443 35789999999999999775 23343
Q ss_pred --HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCC--CCHh
Q 012929 329 --LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GIQF 392 (453)
Q Consensus 329 --~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~p--GT~~ 392 (453)
.+..++.++.+.+. |+.+...+++ +||.+++++.+..+++++++...+++.+|.|.| ||+.
T Consensus 171 il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~ 235 (442)
T TIGR01290 171 LLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVY 235 (442)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCcc
Confidence 34556788888888 7665444332 267788999999999999998889999999888 8875
No 111
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.13 E-value=1e-08 Score=102.75 Aligned_cols=195 Identities=17% Similarity=0.281 Sum_probs=138.5
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-----------------CCcEEEEeecCCCCCCC
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-----------------GVKEVWLSSEDTGAYGR 253 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-----------------G~~eI~l~~~d~~~yg~ 253 (453)
....+|.++-||+.+|+||.+.. -|-.|..++.+|++++..+.+. .++.|+|.| .|.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCC
Confidence 45679999999999999998864 3668999999999999876431 267788876 344
Q ss_pred CcCCCHHHHHHHHHHhCCC-----CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cC
Q 012929 254 DIGVNLPILLNAIVAELPP-----DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NR 325 (453)
Q Consensus 254 d~~~~l~~Ll~~l~~~i~~-----~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R 325 (453)
.. .++..+++.+.- +.. .+...+.++++- +.+. +.+++... .-..|-+.+-+.+++..+.+ ||
T Consensus 180 PL-~NydnV~~ai~i-l~d~~g~~is~R~ITVST~G---ivp~---I~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~ 250 (371)
T PRK14461 180 PF-ANYDRWWQAVER-LHDPQGFNLGARSMTVSTVG---LVKG---IRRLANER-LPINLAISLHAPDDALRSELMPVNR 250 (371)
T ss_pred ch-hhHHHHHHHHHH-hcCccccCcCCCceEEEeec---chhH---HHHHHhcc-cCceEEEEeCCCCHHHHHHhcCccc
Confidence 32 245556666543 211 012355555432 3333 34444432 22478899999999998654 68
Q ss_pred CCCHHHHHHHHHHHHHhCC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEecccCCCCHhH---HHH
Q 012929 326 EYTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGIQFL---NLD 396 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~p-gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~i~i~~~sp~pGT~~~---~~R 396 (453)
.|..+++.++++...+.-. -+.+..-+|=|. .++.++..+..++++.++ .-++++-+|-|.||+++. .++
T Consensus 251 ~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~ 329 (371)
T PRK14461 251 RYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERER 329 (371)
T ss_pred CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHH
Confidence 9999999999988866522 277777777777 999999999999999883 358999999999999876 444
Q ss_pred HHHHH
Q 012929 397 STELL 401 (453)
Q Consensus 397 ~~~l~ 401 (453)
...+.
T Consensus 330 i~~F~ 334 (371)
T PRK14461 330 VTTFQ 334 (371)
T ss_pred HHHHH
Confidence 44333
No 112
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.12 E-value=7.6e-09 Score=104.18 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=128.3
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCC--CcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G--~~eI~l~~-~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
....|.++.||+.+|.||..+.. |..|..+.++|++++..+...| +..|+|.| .....+ .++.+.++.+.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-----~~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-----PELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-----HHHHHHHHHHhc
Confidence 46789999999999999998853 6688999999999999776554 88899998 443332 234455544433
Q ss_pred hCCCC--CCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHh-
Q 012929 269 ELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIEL- 342 (453)
Q Consensus 269 ~i~~~--~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~~lr~~- 342 (453)
. ... +...+.+++.- +.+.++.+..... . ..+.+.+-+.+++..+.+ ++.+..+++.++++...+.
T Consensus 174 ~-~~~~~~~r~itVsT~G---~~~~i~~l~~~~~--~--v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~ 245 (347)
T PRK14453 174 P-NLFGLSQRRITISTIG---IIPGIQRLTQEFP--Q--VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHT 245 (347)
T ss_pred c-cccCCCCCcEEEECCC---CchhHHHHHhhcc--C--cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhc
Confidence 1 101 12345555332 2222222333221 1 245568889988887544 4567888888777666553
Q ss_pred CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC----CCeEEEEecccCCCCH
Q 012929 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGIQ 391 (453)
Q Consensus 343 ~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~----~~~i~i~~~sp~pGT~ 391 (453)
-..+.+..-+|=|+ .++++++++..+|++.++ ...+++-+|.|.++.+
T Consensus 246 ~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~ 297 (347)
T PRK14453 246 GRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP 297 (347)
T ss_pred CCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC
Confidence 22488889999998 899999999999999884 5689999999998864
No 113
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.11 E-value=2.5e-09 Score=103.13 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCCCcccccccccc--CccccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCC-HHHHHHHH
Q 012929 193 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAI 266 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~r--g~~rsr~~e~Iv~Ei~~l~~---~G~~eI~l~~~d~~~yg~d~~~~-l~~Ll~~l 266 (453)
...+....||+++|.||..+... ...+..++++|++++..... .....|.|+|.+.+.+ .+ +.++++.+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~~~~l~~~~ 95 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRAC 95 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-----HHHHHHHHHHH
Confidence 34667899999999999976432 22456799999999987643 2335688877555432 23 24666766
Q ss_pred HHhCCCCCCceEEEEecCCcC--hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 012929 267 VAELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~--i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~p 344 (453)
.+. +. .+.+. ++... ..+. +..++. .+..+.+++.+.+++..+.+.. .+.+...+.++.+++.
T Consensus 96 k~~----g~-~i~l~-TNG~~~~~~~~---~~~ll~---~~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~-- 160 (246)
T PRK11145 96 KKE----GI-HTCLD-TNGFVRRYDPV---IDELLD---VTDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKR-- 160 (246)
T ss_pred HHc----CC-CEEEE-CCCCCCcchHH---HHHHHH---hCCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhC--
Confidence 542 33 34443 23221 1232 333332 2357889999999998887754 3557788888888888
Q ss_pred CcE--EEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEecccCCCCH
Q 012929 345 GMQ--IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGIQ 391 (453)
Q Consensus 345 gi~--v~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~i~i~~~sp~pGT~ 391 (453)
|+. +.+-+|-|+ .++++++++..+|+++++ +..+++.+|-|.++.+
T Consensus 161 g~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 161 NQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred CCcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 654 555555444 566789999999999985 5678888888876643
No 114
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.11 E-value=1.8e-08 Score=101.98 Aligned_cols=192 Identities=16% Similarity=0.294 Sum_probs=128.3
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHH---HHH-C--C---CcEEEEeecCCCCCCCCcC--CCH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT---VIA-D--G---VKEVWLSSEDTGAYGRDIG--VNL 259 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~---l~~-~--G---~~eI~l~~~d~~~yg~d~~--~~l 259 (453)
.....+.++.||+.+|.||..+.. |..|..++++|++++.. ... . | ++.|+|.| .|...- ..+
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmG-----mGEPLln~~~v 174 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMG-----MGEPLLNLDEV 174 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEec-----CCcccCCHHHH
Confidence 355689999999999999987643 45678999999999943 332 2 3 67888887 233221 123
Q ss_pred HHHHHHHHHhCCCCCC----ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC---CCCHHHH
Q 012929 260 PILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDF 332 (453)
Q Consensus 260 ~~Ll~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R---~~t~e~~ 332 (453)
.+.++.+.+.. +. ..+.+++ +. +.+. +..+... .. ..+.+.+.|.+++..+.+.+ .++.+++
T Consensus 175 ~~~l~~l~~~~---Gl~~~~r~itvsT-~G--~~~~---i~~L~~~-~l-~~L~iSLha~~~e~r~~i~p~~~~~~l~~l 243 (354)
T PRK14460 175 MRSLRTLNNEK---GLNFSPRRITVST-CG--IEKG---LRELGES-GL-AFLAVSLHAPNQELRERIMPKAARWPLDDL 243 (354)
T ss_pred HHHHHHHhhhh---ccCCCCCeEEEEC-CC--ChHH---HHHHHhC-CC-cEEEEeCCCCCHHHHHHhcCccccCCHHHH
Confidence 34444443210 22 2455553 22 2333 3334433 33 58999999999999977744 4788888
Q ss_pred HHHHHHHHHh-CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 333 RTVVDTLIEL-VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 333 ~~~i~~lr~~-~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
.+++...... ...+.+..-+|=| .+++++++++..+|++.++. .+++-+|.|.+|.+.. +++...+.
T Consensus 244 l~al~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y~~p~~e~v~~f~ 314 (354)
T PRK14460 244 IAALKSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPYSAPTEERILAFE 314 (354)
T ss_pred HHHHHHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 8877755433 1236666666666 49999999999999999875 7999999999998754 44444433
No 115
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.09 E-value=1.8e-08 Score=101.93 Aligned_cols=187 Identities=17% Similarity=0.299 Sum_probs=126.8
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcC--CCHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~------~G~~eI~l~~~d~~~yg~d~~--~~l~~L 262 (453)
....+|..+.||+.+|+||..+.. |..|..++++|++++..+.. .++..|+|.|. |...- ..+.++
T Consensus 104 ~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~ 177 (355)
T TIGR00048 104 RATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKA 177 (355)
T ss_pred CcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHH
Confidence 455789999999999999998653 55688999999999876532 24777888772 33221 123344
Q ss_pred HHHHHHhCCCCCC--ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHH
Q 012929 263 LNAIVAELPPDGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (453)
Q Consensus 263 l~~l~~~i~~~~~--~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~ 337 (453)
++.+.+... .++ ..+.+++ +. +.+. +.+++....- ..|.+.+-+.+++..+.+ +|.++.+++.+.+.
T Consensus 178 l~~l~~~~g-~~i~~~~itisT-~G--~~~~---i~~l~~~~l~-~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~ 249 (355)
T TIGR00048 178 MEIMNDDFG-LGISKRRITIST-SG--VVPK---IDILADKMLQ-VALAISLHAPNDELRSSLMPINKKYNIETLLAAVR 249 (355)
T ss_pred HHHhhcccc-cCcCCCeEEEEC-CC--chHH---HHHHHHhCCC-cEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHH
Confidence 444432110 012 3455542 22 2333 3444432211 257799999999999775 67788999998887
Q ss_pred HHH-HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 338 TLI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 338 ~lr-~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
... +.-..+.+..-+|=|+ .++++++.+..++++.++. ++++-+|.|.++....
T Consensus 250 ~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 250 RYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADYE 304 (355)
T ss_pred HHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCCC
Confidence 554 4412377777788787 8999999999999999874 7899999999987653
No 116
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=110.02 Aligned_cols=188 Identities=16% Similarity=0.244 Sum_probs=129.2
Q ss_pred EEEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
.+|..+.=|.++|+||.+....+ +-...++|+|.++++.+.+.|++++.|++.....++.+ .+.++++.+.+..+
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~---y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE---YYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH---HHHHHHHHHHHhCc
Confidence 45678888999999999976543 23577999999999999999999999998654444322 45677777776554
Q ss_pred CCCCceEEEEe-----c-CCcCh-hHHHHHHHHHHhCCCCceeee-cccCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHh
Q 012929 272 PDGSTMLRIGM-----T-NPPFI-LEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 272 ~~~~~~ir~~~-----~-~p~~i-~~~l~~l~~l~~~~~~~~~l~-iglESgs~~vLk~m~-R~~t~e~~~~~i~~lr~~ 342 (453)
...-..++. . ....+ .++ .+..+.+ .++..+- .|-|=.++++.+.+. .+.+.+.++++++.+++.
T Consensus 138 --~~~i~a~s~~ei~~~~~~~~~s~~E--~l~~Lk~--aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l 211 (370)
T COG1060 138 --DLHIHALSAGEILFLAREGGLSYEE--VLKRLKE--AGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL 211 (370)
T ss_pred --chhhcccCHHHhHHHHhccCCCHHH--HHHHHHH--cCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 222212211 0 11111 111 1444443 2333332 233334566665554 356899999999999999
Q ss_pred CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-----CCeEEEEecccCCCC-HhH
Q 012929 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGI-QFL 393 (453)
Q Consensus 343 ~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~-----~~~i~i~~~sp~pGT-~~~ 393 (453)
||...+.+++|. +||.+|...++.-++++. +..+.+-.|.|.+++ ++.
T Consensus 212 --GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~ 265 (370)
T COG1060 212 --GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAE 265 (370)
T ss_pred --CCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCcccc
Confidence 999999999999 999999999999998883 445555678888887 444
No 117
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=3.4e-08 Score=99.52 Aligned_cols=195 Identities=16% Similarity=0.282 Sum_probs=131.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-C-----CcEEEEeecCCCCCCCCcCCCHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSSEDTGAYGRDIGVNLPILLN 264 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G-----~~eI~l~~~d~~~yg~d~~~~l~~Ll~ 264 (453)
....+|.++.||+.+|.||..+.. |..|..++++|++++...... | ++.|+|.| +|... .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccc-cCHHHHHH
Confidence 345689999999999999987643 567889999999999876543 2 56788886 23322 13345555
Q ss_pred HHHHhCCCCCC----ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHH
Q 012929 265 AIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVD 337 (453)
Q Consensus 265 ~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~ 337 (453)
.+.......+. ..+.+++.- +.+. +.+++...-. ..|.+.+-+.+++..+.+. +.++.+++.+.++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvST~G---~~~~---i~~L~~~~l~-~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLSTVG---IPKG---IRRLAEEDLG-VRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHhcccccccccCceEEEECCC---ChHH---HHHHHHhCcC-cEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 54321110011 245554222 2333 3334432222 2588999999999998774 6789999999998
Q ss_pred HHHHhCC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 338 TLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 338 ~lr~~~p-gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
...+... .+.+..-+|=|+ .+++++..+..++++.+. ..+++-+|.|.++.... +++...+.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~~~~~ps~e~i~~f~ 303 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGSPFQSSPRAQILAFA 303 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 6655522 377777777777 899999999999999986 48999999998875443 44444433
No 118
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.08 E-value=1.1e-08 Score=100.77 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=134.4
Q ss_pred EEEEeCCCCCCCcccccccc--ccCc-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 194 EILPINVGCLGACTYCKTKH--ARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~--~rg~-~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.-|.++.-|+++|.||.... ...+ .-..++|+|..=++.+.+.|++.|.|+|..... ..++.++++.+.+.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc-
Confidence 35788999999999998653 1111 235579999999999988999999999854322 25788888888653
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc---E
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM---Q 347 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi---~ 347 (453)
+...+.++ +|-..+.... .++.. ++...|++.+.|.+++.++.+.+....+++.+-|+.+.++ |+ .
T Consensus 87 ---~~~~islT-TNG~~L~~~a---~~Lk~--AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVK 155 (322)
T COG2896 87 ---GIRDLSLT-TNGVLLARRA---ADLKE--AGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVK 155 (322)
T ss_pred ---ccceEEEe-cchhhHHHHH---HHHHH--cCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceE
Confidence 34555554 4544344332 22222 5679999999999999999998877799999999999999 75 4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+++.+| +|-+++++.+.++|+...++ .+.+--|+|.-....+
T Consensus 156 lN~Vv~---kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~ 197 (322)
T COG2896 156 LNTVLM---KGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSW 197 (322)
T ss_pred EEEEEe---cCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccch
Confidence 666665 55699999999999999987 6888888887764444
No 119
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=3.1e-08 Score=100.44 Aligned_cols=195 Identities=14% Similarity=0.283 Sum_probs=132.1
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC----------CCcEEEEeecCCCCCCCCcC--CC
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD----------GVKEVWLSSEDTGAYGRDIG--VN 258 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~----------G~~eI~l~~~d~~~yg~d~~--~~ 258 (453)
.....|.++-||+.+|.||..+. .|-.|..+.++|++++..+... +++.|+|.| .|.... ..
T Consensus 102 ~~t~CvSsQvGC~~~C~FC~t~~-~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-----mGEPL~N~d~ 175 (372)
T PRK11194 102 RATLCVSSQVGCALECKFCSTAQ-QGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-----MGEPLLNLNN 175 (372)
T ss_pred CeeEEEecCCCCCCcCCCCCCCC-CCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-----CCccccCHHH
Confidence 45678999999999999999884 3556889999999999765421 278888876 243321 12
Q ss_pred HHHHHHHHHHhCC-CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHH
Q 012929 259 LPILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRT 334 (453)
Q Consensus 259 l~~Ll~~l~~~i~-~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~ 334 (453)
+.+.++.+.+... ..+...+.+++.- +.+. +.+++.... ..|.+.+-+.+++..+.+ ++.+..+++.+
T Consensus 176 v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~---i~~l~~~~d--~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~ 247 (372)
T PRK11194 176 VVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPA---LDKLGDMID--VALAISLHAPNDELRDEIVPINKKYNIETFLA 247 (372)
T ss_pred HHHHHHHHhhhhccCcCCCeEEEECCC---CchH---HHHHHhccC--eEEEeeccCCCHHHHHHhcCCcccccHHHHHH
Confidence 2344555543210 0012356665332 2333 333443322 256677889999988654 35678888887
Q ss_pred HHHHHHHhC----CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 335 VVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 335 ~i~~lr~~~----pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
++....+.. ..+.+..-+|=|+ .++++++++..+|++.++. .+++-+|-|++|.+.. +++...+.
T Consensus 248 a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~~~ps~e~v~~f~ 319 (372)
T PRK11194 248 AVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPYGRSSNSRIDRFS 319 (372)
T ss_pred HHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 766665543 2488999999998 8999999999999999874 8999999999987543 45544443
No 120
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=1.1e-08 Score=102.26 Aligned_cols=192 Identities=17% Similarity=0.234 Sum_probs=133.9
Q ss_pred EEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
..+|.++-||+.+|.||..... |-.|..+.++|++++..+.+. .+++|+|.| .|... .++.++++.+.. +.
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~-g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmG-----mGEPl-~N~d~vl~ai~~-l~ 168 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRS-GLLRQLGSAEIVAQVVLARRRRAVKKVVFMG-----MGEPA-HNLDNVLEAIDL-LG 168 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEec-----cCccc-CCHHHHHHHHHH-hh
Confidence 5789999999999999987643 567888999999999988765 689999987 24332 244555555322 11
Q ss_pred ---CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCC
Q 012929 272 ---PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 272 ---~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~~lr~~~pg 345 (453)
..+...+.++.+- +.+.. .++... .+-..|.+.+.+.+++..+.+. +.++.+++.+++....+.. |
T Consensus 169 ~~~~i~~r~itiST~G---~~~~i---~rL~~~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-g 240 (344)
T PRK14464 169 TEGGIGHKNLVFSTVG---DPRVF---ERLPQQ-RVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-G 240 (344)
T ss_pred chhcCCCceEEEeccc---CchHH---HHHHHh-cCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-C
Confidence 0123445554332 22222 222221 2223566789999999986654 5789999999888887653 4
Q ss_pred --cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 346 --MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 346 --i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
+.+..-+|=|. .++.++..+..++++.+.. ++++-+|-|.+|++.. .++...+.+
T Consensus 241 rri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 241 YPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CEEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCccCCCHHHHHHHHH
Confidence 55666666676 8999999999999998754 7899999999998776 555554444
No 121
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.04 E-value=2.5e-08 Score=99.87 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=124.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
+....++++.+|+.+|.||........ .+..+++++++.++ +.|+..|.|+|.+...+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 456678999999999999986432211 23568888876655 35888899988666554 467888888765
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m-~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
. + ..+.+. +|...+++. +..+...+ ...+.+.+.+.. +....+ +++.+.+...+.|+.++++ |+.
T Consensus 99 ~----g-~~v~l~-TNG~ll~~~---~~~l~~~~--~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 R----K-KFVYLC-TNALLLEKK---LDKFEPSP--YLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred c----C-CeEEEe-cCceehHHH---HHHHHhCC--CcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 2 3 234443 566555544 34444432 246788888754 445444 5566899999999999999 877
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|+..++
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~ 207 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP 207 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccc
Confidence 6655433 367899999999999999999999998877765443
No 122
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=3.2e-08 Score=100.01 Aligned_cols=184 Identities=18% Similarity=0.275 Sum_probs=124.6
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~---~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (453)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|.| .|...- ..+.++++.
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-----mGEPLln~d~v~~~i~~ 173 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-----MGEPLLNYENVIKSIKI 173 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEc-----cChhhhhHHHHHHHHHH
Confidence 45678999999999999998754 244577899999999976532 3678899887 233321 124455555
Q ss_pred HHHhC-CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 012929 266 IVAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 341 (453)
Q Consensus 266 l~~~i-~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~~lr~ 341 (453)
+.+.- ...+...+.++ ++. +.+. +.+++.. ..-..+.+.+.+.+++..+.+ +++++.+++.+.++.+.+
T Consensus 174 l~~~~~~~~g~~~itis-TnG--~~~~---i~~L~~~-~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~ 246 (343)
T PRK14469 174 LNHKKMKNIGIRRITIS-TVG--IPEK---IIQLAEE-GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQK 246 (343)
T ss_pred HhchhcccCCCCeEEEE-CCC--ChHH---HHHHHhh-CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHH
Confidence 43210 00122355554 332 2333 3444443 221269999999999987653 678899999999887665
Q ss_pred h-CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCC
Q 012929 342 L-VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (453)
Q Consensus 342 ~-~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pG 389 (453)
. ...+.+..-+|-|+ .++.+++++..++++.++. .+++-+|.|.++
T Consensus 247 ~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 247 KTGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred HhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 4 22466666666665 7899999999999999864 689999999876
No 123
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.99 E-value=2.7e-08 Score=99.50 Aligned_cols=187 Identities=17% Similarity=0.248 Sum_probs=121.9
Q ss_pred EEEEEeCCCCCCCccccccccccCccc-cCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~r-sr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.+.+.++.||+.+|.||...... ..+ ..+.+++.+-+..+.+. |+++|.|+|.+..... + ..+.++++.+.. +
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i 171 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFP-YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-I 171 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-C
Confidence 35677999999999999875432 122 12233333334444444 8999999997766541 1 247888888864 5
Q ss_pred CCCCCceEEEEe----cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 012929 271 PPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 271 ~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi 346 (453)
+ ....+|+++ +.|..+++++ .++++..+.-..+.+.+.+.. ++ .+++.++++.++++ |+
T Consensus 172 ~--~~~~iri~tr~~~~~p~rit~el---~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~--Gi 234 (321)
T TIGR03821 172 P--HLKRLRIHTRLPVVIPDRITSGL---CDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNA--GI 234 (321)
T ss_pred C--CCcEEEEecCcceeeHHHhhHHH---HHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHc--CC
Confidence 5 566788875 4455565544 333332222122234555542 32 15588899999999 97
Q ss_pred EEE--EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 347 QIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 347 ~v~--~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
.+. +-++-|. .++.+++.+..+.+.++++...++|.+.|-.|+.-+ .++..++.+
T Consensus 235 ~v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~ 294 (321)
T TIGR03821 235 TLLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMA 294 (321)
T ss_pred EEEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHH
Confidence 654 3444455 689999999999999999999999999999997655 455554443
No 124
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.99 E-value=1e-07 Score=96.05 Aligned_cols=195 Identities=16% Similarity=0.278 Sum_probs=132.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcC--CCHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~------G~~eI~l~~~d~~~yg~d~~--~~l~~L 262 (453)
.....|.++.|||.+|.||..+. .|..|..++++|++++..+... ....|+|.| .|.... ..+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----mGEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----MGEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----CcccccCHHHHHHH
Confidence 35578999999999999998874 3567899999999999866542 134666664 233221 233455
Q ss_pred HHHHHHh--CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHH
Q 012929 263 LNAIVAE--LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVD 337 (453)
Q Consensus 263 l~~l~~~--i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~ 337 (453)
++.+.+. +. .+...+.++++- +.+. +.+++... .-..+.+.+-+.+++..+.+ ++.|..+++.+.++
T Consensus 183 l~~l~~~~Gl~-~~~r~itVsTsG---~~~~---i~~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~ 254 (356)
T PRK14462 183 IKIFSENDGLA-ISPRRQTISTSG---LASK---IKKLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVR 254 (356)
T ss_pred HHHhcCccCCC-cCCCceEEECCC---ChHH---HHHHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHH
Confidence 5555432 10 011244555322 2233 33444332 21357778999999999765 56788899999887
Q ss_pred HHH-HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 338 TLI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 338 ~lr-~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
... +.-..+.+..-+|=|+ .+++|+.++..++++.++ .++++-+|-|+++.+.. +++...+.
T Consensus 255 ~y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~~~ps~e~i~~f~ 320 (356)
T PRK14462 255 KFPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKFERPSLEDMIKFQ 320 (356)
T ss_pred HHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCCCCCCHHHHHHHH
Confidence 444 4423488888889898 899999999999999986 58999999999997655 45444443
No 125
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.98 E-value=4.1e-08 Score=100.41 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=137.7
Q ss_pred ccceEEEEEeCCCCCCCccccccccccC-ccccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 189 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
+.+-++.+.++.+|+.+|.||.-....| .....+.+++.+-++.+.+. ++++|.|+|.|...... ..|..+++.+
T Consensus 105 rYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L 181 (417)
T TIGR03820 105 RYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTEL 181 (417)
T ss_pred ccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHH
Confidence 4456778899999999999998765434 24566788888888888875 99999999988776522 2355567777
Q ss_pred HHhCCCCCCceEEEEec----CCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 012929 267 VAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~----~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~ 342 (453)
.+ ++ ....+|+++- .|..+++++ +..+.+. + .+.++++..+++- ..++..+++++++++
T Consensus 182 ~~-Ip--hV~~IRI~TR~pvv~P~RIT~el--l~~Lk~~-~---~~~v~~h~nhp~E--------it~~a~~Al~~L~~a 244 (417)
T TIGR03820 182 RA-IP--HVEVIRIGTRVPVVLPQRITDEL--VAILKKH-H---PVWLNTHFNHPRE--------ITASSKKALAKLADA 244 (417)
T ss_pred hh-cC--CCceEEEeeccccccccccCHHH--HHHHHhc-C---CeEEEEeCCChHh--------ChHHHHHHHHHHHHc
Confidence 65 66 6777898742 266677654 3333333 2 2344444444432 258899999999999
Q ss_pred CCCcEEE--EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 343 ~pgi~v~--~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
||.+. +-++-|. .++.+.+.+..+-+.++++.--++|..-+.+||.-| -.+..+|++
T Consensus 245 --GI~l~nQsVLLkGV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~ 306 (417)
T TIGR03820 245 --GIPLGNQSVLLAGV-NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIE 306 (417)
T ss_pred --CCEEEeeceEECCc-CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHH
Confidence 97644 6677775 899999999999999999888888999999999777 444444433
No 126
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.95 E-value=4.3e-08 Score=94.87 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=132.4
Q ss_pred EEEEeCCCCCCC----ccccccccccCccccCCHHHHHHHHHHHHHC-C--CcE--E-EEeecCCCCCCCCcC-CCHHHH
Q 012929 194 EILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G--VKE--V-WLSSEDTGAYGRDIG-VNLPIL 262 (453)
Q Consensus 194 ~~i~isrGC~~~----CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G--~~e--I-~l~~~d~~~yg~d~~-~~l~~L 262 (453)
..|--++||.|. |.+|..+.-. .....+.++++.++.+..++ . ..+ | +|++.-|.. ..+.+ .....+
T Consensus 49 ~vILrT~GC~w~~~~gC~MCgY~~d~-~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~I 126 (358)
T COG1244 49 TVILRTRGCRWYREGGCYMCGYPADS-AGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYI 126 (358)
T ss_pred EEEEecCCcceeccCCcceecccccc-CCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHH
Confidence 355668999864 9999987642 25677899999999887754 1 223 3 344433221 11111 123456
Q ss_pred HHHHHHhCCCCCCceEEEEecCCcChhHHH-HHHHHHHhCCCCceeeecccCCCCHHHH-HhhcCCCCHHHHHHHHHHHH
Q 012929 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLI 340 (453)
Q Consensus 263 l~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~~~~~~~~~l~iglESgs~~vL-k~m~R~~t~e~~~~~i~~lr 340 (453)
++.+.+ .+ ....+-+. +.|+.++++- .++.+++. +.--.+.||+||.+|++. ..|||+.|.++|.++++.++
T Consensus 127 l~~is~-~~--~v~~vvvE-SRpE~I~eE~l~e~~~il~--gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir 200 (358)
T COG1244 127 LERISE-ND--NVKEVVVE-SRPEFIREERLEEITEILE--GKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIR 200 (358)
T ss_pred HHHHhh-cc--ceeEEEee-cCchhcCHHHHHHHHHhhC--CceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHH
Confidence 666654 22 35666666 6888888654 33344333 334589999999999999 89999999999999999999
Q ss_pred HhCCCcEEEEEEEEeCCCCCH----HHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 341 ELVPGMQIATDIICGFPGETD----EDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~----ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+ |+.+.+++++=.|-=|+ +|...++. ..+-.-+.+.+.+-+...||-+-
T Consensus 201 ~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE 254 (358)
T COG1244 201 NY--GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVE 254 (358)
T ss_pred Hc--CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHH
Confidence 99 99999999999987555 44455555 33445688999999999999765
No 127
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.95 E-value=1.4e-07 Score=94.71 Aligned_cols=192 Identities=13% Similarity=0.210 Sum_probs=130.4
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~---~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
....|.++-||+.+|+||.... .|-.|..+..+|++++..+.+ ..+.+|+|.| +|... .++..+++.+.
T Consensus 105 ~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~- 176 (342)
T PRK14465 105 KTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS- 176 (342)
T ss_pred eEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH-
Confidence 5578999999999999999865 355688999999999987654 3578888887 45442 23344444442
Q ss_pred hCCC-----CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHHHHHH
Q 012929 269 ELPP-----DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLI 340 (453)
Q Consensus 269 ~i~~-----~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i~~lr 340 (453)
.+.. .+...+++++ + .+.+.+ .+++..... ..|.+.+-+.+++....+ ++.++.+++.+++..+.
T Consensus 177 ~l~~~~~~~~~~r~itvST-~--G~~~~i---~~l~~~~~~-~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~ 249 (342)
T PRK14465 177 ILHDPDAFNLGAKRITIST-S--GVVNGI---RRFIENKEP-YNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFT 249 (342)
T ss_pred HHhChhhhcCCCCeEEEeC-C--CchHHH---HHHHhhccC-ceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHH
Confidence 2211 0123555542 2 233333 334432221 278889999999999666 68899999999999776
Q ss_pred HhCC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 341 ELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 341 ~~~p-gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
+... -+.+..-+|=|+ .+++|+.++..++++.++ ..+++-+|.| ++.... +++...+.
T Consensus 250 ~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~-~~~~~~~ps~e~i~~F~ 311 (342)
T PRK14465 250 RELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT-EFFGWRRPTDDEVAEFI 311 (342)
T ss_pred HHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC-CCCCCCCCCHHHHHHHH
Confidence 5422 256666666676 699999999999999987 5788999998 354333 45444433
No 128
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.92 E-value=1.4e-07 Score=93.41 Aligned_cols=188 Identities=18% Similarity=0.329 Sum_probs=131.3
Q ss_pred cceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC-C------CcEEEEeecCCCCCCCCcCCCHHHH
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPIL 262 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G------~~eI~l~~~d~~~yg~d~~~~l~~L 262 (453)
......|.++-||+-.|+||.+.. .|..|-.+..+|++++..+.+. | +..|+|.| .|... .++..+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl-~N~dnV 171 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPL-LNLDNV 171 (349)
T ss_pred CCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchh-hhHHHH
Confidence 345678999999999999999864 3678999999999999987643 2 45677776 34432 244445
Q ss_pred HHHHHHhCC-C--CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh---cCCCCHHHHHHHH
Q 012929 263 LNAIVAELP-P--DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVV 336 (453)
Q Consensus 263 l~~l~~~i~-~--~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m---~R~~t~e~~~~~i 336 (453)
+..+. .+. . .+...-++ ++.+..+.+.+.+ ++.. .+-..+.+.+.+.+++..+.+ ||.|+.++..+++
T Consensus 172 ~~a~~-i~~~~~G~~ls~R~i-TvSTsGi~~~I~~---l~~~-~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~ 245 (349)
T COG0820 172 VKALE-IINDDEGLGLSKRRI-TVSTSGIVPRIRK---LADE-QLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAI 245 (349)
T ss_pred HHHHH-hhcCcccccccceEE-EEecCCCchhHHH---HHhh-cCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHH
Confidence 44443 222 1 11211122 2334445555433 4322 222478899999999987654 7889999999999
Q ss_pred HHHHHhCCC-cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 337 DTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 337 ~~lr~~~pg-i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
+.-.+.-.. +++..-++=|. .+..++..+.++++..++- ++++-+|-|.||+..
T Consensus 246 r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~y 300 (349)
T COG0820 246 RYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSDY 300 (349)
T ss_pred HhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCCc
Confidence 888776333 66777777776 7779999999999888765 899999999999993
No 129
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.90 E-value=2.5e-07 Score=93.27 Aligned_cols=196 Identities=14% Similarity=0.234 Sum_probs=128.0
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcC--CCHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (453)
...++|.++-|||.+|.||..+. -|..|..++++|++++...... .+..+++.| .|...- ..+.++++.
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----gGEPLln~d~v~~~l~~ 173 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----SGEPLDNYENVMKFLKI 173 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----CchhhcCHHHHHHHHHH
Confidence 45679999999999999998863 3557889999999999876542 244555543 233221 134555555
Q ss_pred HHHhCC-CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHHHHHHHHH-HH
Q 012929 266 IVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDT-LI 340 (453)
Q Consensus 266 l~~~i~-~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~~~~~i~~-lr 340 (453)
+.+... ..+...+.+++.- +.+. +.+++.....+ .+.+.+-+.+++..+.+- +.+..+++.+++.. +.
T Consensus 174 l~~~~gi~~~~r~itvsTsG---~~p~---i~~l~~~~~~~-~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~ 246 (342)
T PRK14454 174 VNSPYGLNIGQRHITLSTCG---IVPK---IYELADENLQI-TLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYIN 246 (342)
T ss_pred HhcccccCcCCCceEEECcC---ChhH---HHHHHhhcccc-eEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 543110 0011245565321 2222 23333332222 377899999999987653 56778888777765 44
Q ss_pred HhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHH
Q 012929 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELL 401 (453)
Q Consensus 341 ~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~ 401 (453)
+.-..+.+..-+|=|+ .++++++++..++++.+. ..+++-+|-|.++.... +++...+.
T Consensus 247 ~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~~~~ps~e~l~~f~ 308 (342)
T PRK14454 247 KTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENGFKKSSKEKIKKFK 308 (342)
T ss_pred HhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCCCCCCCHHHHHHHH
Confidence 4422377888888887 899999999999999874 58999999998887554 44444443
No 130
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.86 E-value=9e-08 Score=87.95 Aligned_cols=181 Identities=17% Similarity=0.238 Sum_probs=130.8
Q ss_pred EeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCc
Q 012929 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (453)
Q Consensus 197 ~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~ 276 (453)
-+++-|..+|..|.-...++.. .-+-++++.++..+.+.|+..+.+.|.-. +.|.=--..+.+.|+++.+.. +
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~-srg~VPl~kf~d~lK~lke~~---~-- 88 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMD-SRGKVPLWKFKDELKALKERT---G-- 88 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcC-CCCCccHHHHHHHHHHHHHhh---C--
Confidence 3677799999999987766543 33338899999999999999998877322 222111146777888877652 2
Q ss_pred eEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEEEEEEEe
Q 012929 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (453)
Q Consensus 277 ~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG 355 (453)
+.+. .|...+.+.. +..+... +..-+.+-+= |++++++++-+ +.++++|.+.+..+++. |+.+...+++|
T Consensus 89 -l~in-aHvGfvdE~~--~eklk~~--~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 89 -LLIN-AHVGFVDESD--LEKLKEE--LVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred -eEEE-EEeeeccHHH--HHHHHHh--cCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 2221 2333334332 4444432 2344555554 56677766644 67999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+-...-=.++++.+.+..+|.+-+..+.|.|||.+.
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~ 197 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMG 197 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhcc
Confidence 98877776678999999999999999999999999998
No 131
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.83 E-value=7.5e-08 Score=90.98 Aligned_cols=177 Identities=21% Similarity=0.342 Sum_probs=122.3
Q ss_pred EEEeCCCCCCCccccccccccC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCC
Q 012929 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~ 271 (453)
++-.++-|...|.||++...|. +.-...|+...+- +.+-|+..|+|++.|-... .|.+ ..+++-++.|.+.-
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeA---IasWgl~YiVlTSVDRDDl-pDgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEA---IASWGLDYIVLTSVDRDDL-PDGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHH---HHHcCCCeEEEEecccccC-cCcchHHHHHHHHHHHhhC-
Confidence 4445788999999999987774 3444455555443 4456999999997653322 1111 46788888886532
Q ss_pred CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHhCCCcEEE
Q 012929 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM--NREYTLSDFRTVVDTLIELVPGMQIA 349 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m--~R~~t~e~~~~~i~~lr~~~pgi~v~ 349 (453)
..+-+..+.|+ +...++.+..++.. +..-+--.+|+.-. |.-. .|..+..+-+.+++.+++..|++...
T Consensus 189 ----p~ilvE~L~pD-F~Gd~~~Ve~va~S--GLDV~AHNvETVe~--Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litk 259 (360)
T KOG2672|consen 189 ----PEILVECLTPD-FRGDLKAVEKVAKS--GLDVYAHNVETVEE--LTPFVRDPRANYRQSLSVLKHAKEVKPGLITK 259 (360)
T ss_pred ----cccchhhcCcc-ccCchHHHHHHHhc--CccceecchhhHHh--cchhhcCcccchHHhHHHHHHHHhhCCCceeh
Confidence 34555556665 44444445555543 22333334554322 2222 34567888999999999999998888
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp 386 (453)
+.||+|+ |||+|.+.+|++.++....+.+.+.+|++
T Consensus 260 tsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 260 TSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred hhhhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 9999998 99999999999999999999999888874
No 132
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.74 E-value=5.1e-07 Score=87.37 Aligned_cols=194 Identities=17% Similarity=0.272 Sum_probs=129.4
Q ss_pred EEEeCCCCCCCcccccccc---ccCc--cccCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCc-CCCHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKH---ARGH--LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDI-GVNLPILLNAI 266 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~---~rg~--~rsr~~e~Iv~Ei~~l~~~--G~~eI~l~~~d~~~yg~d~-~~~l~~Ll~~l 266 (453)
.+.-+.||+.+|-||++.. .|.+ -....+|.+++.++..++. +--|..+=|+ |... .+.+.+|++++
T Consensus 110 qVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGq-----GEP~lYP~l~~lVqal 184 (414)
T COG2100 110 QVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQ-----GEPLLYPHLVDLVQAL 184 (414)
T ss_pred EecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCC-----CCCccchhHHHHHHHH
Confidence 4556899999999999853 2211 2234688999988887764 2334554332 3221 25788999998
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh-c-CCCCHHHHHHHHHHHHHhCC
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-N-REYTLSDFRTVVDTLIELVP 344 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m-~-R~~t~e~~~~~i~~lr~~~p 344 (453)
.+ ++ +...+.+. +|...+++.+ +.++.+ ++..++++.+.|.+++.-|.| + +-|+++..++.++.+...
T Consensus 185 k~-~~--~v~vVSmQ-Tng~~L~~~l--v~eLee--AGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a-- 254 (414)
T COG2100 185 KE-HK--GVEVVSMQ-TNGVLLSKKL--VDELEE--AGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA-- 254 (414)
T ss_pred hc-CC--CceEEEEe-eCceeccHHH--HHHHHH--hCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--
Confidence 75 55 66655554 5666677665 555544 456899999999999988766 3 368999999999999998
Q ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC----CeEEEEeccc-----CC--CCHhH-HHHHHHHHHHH
Q 012929 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYP-----RP--GIQFL-NLDSTELLSLL 404 (453)
Q Consensus 345 gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~----~~i~i~~~sp-----~p--GT~~~-~~R~~~l~~~~ 404 (453)
+|.+-..= +=+||=+++++...++|+.+++. ..+.+..|.| .| ..++- ++-++.|.++.
T Consensus 255 ~idvlIaP-v~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 255 GIDVLIAP-VWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred CCCEEEee-eecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHH
Confidence 86543211 12478899999999999999953 2344444444 34 22222 44455555544
No 133
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.72 E-value=9.8e-07 Score=86.01 Aligned_cols=173 Identities=17% Similarity=0.280 Sum_probs=124.7
Q ss_pred CCCCCcccccccccc----CccccCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCC-cCCCHHHHHHHHHHh
Q 012929 201 GCLGACTYCKTKHAR----GHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAE 269 (453)
Q Consensus 201 GC~~~CsFC~~~~~r----g~~rsr~~e~Iv~Ei~~l~~~------G~~eI~l~~~d~~~yg~d-~~~~l~~Ll~~l~~~ 269 (453)
-|.++|.||...... ++....+.+.|.++++.+... .++.+.|.+. |.. ...+|.+|++.+.+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHhc
Confidence 499999999873221 245667889999999998876 3566666542 332 236889999998764
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCC---CHHHHHHHHHHHHHh-CCC
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 345 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~---t~e~~~~~i~~lr~~-~pg 345 (453)
+... .+--+|.. + ++. +.++. ....+.+.+.+.+.+.+++++|++ ..+.+.+.++.+++. ...
T Consensus 108 ----g~~~-tflvTNgs-l-pdv--~~~L~----~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 108 ----GKKT-TFLVTNGS-L-PDV--LEELK----LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred ----CCce-EEEEeCCC-h-HHH--HHHhc----cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 3222 22223443 2 222 22222 235788999999999999999986 578888888888886 334
Q ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 346 i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+.++=|+ ..+.+++++..++++++.++.+.+..|+ +||..-+
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~ 220 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRY 220 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhh
Confidence 77889999998 6788889999999999999999999888 5555443
No 134
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.71 E-value=6.1e-07 Score=89.85 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=115.2
Q ss_pred eCCCCCCCccccccccccC------ccccCCHHHHHHHHHHHHH---C---C--------------CcEEEEeecCCCCC
Q 012929 198 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---D---G--------------VKEVWLSSEDTGAY 251 (453)
Q Consensus 198 isrGC~~~CsFC~~~~~rg------~~rsr~~e~Iv~Ei~~l~~---~---G--------------~~eI~l~~~d~~~y 251 (453)
+..||+.+|.||..+.... ..+.-++++|++++..... . | .+.+.|.+ .
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl-----~ 138 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL-----S 138 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC-----C
Confidence 5678999999999875432 1456789999999976532 1 2 23455442 1
Q ss_pred CCCc-CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCC---C
Q 012929 252 GRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 327 (453)
Q Consensus 252 g~d~-~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~---~ 327 (453)
|... ...+.+|++.+.+. +. .+.+. +|.. +.+. +..+ . .....+.+.+.+.+++..+.+.|+ .
T Consensus 139 GEPlL~p~l~eli~~~k~~----Gi-~~~L~-TNG~-~~e~---l~~L-~--~~~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKR----GF-TTFLV-TNGT-RPDV---LEKL-E--EEPTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred ccccchhhHHHHHHHHHHc----CC-CEEEE-CCCC-CHHH---HHHH-H--hcCCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 3322 13678888887653 43 34443 4442 2322 3333 2 233678899999999999999874 5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
+.+.+.+.++.+++..-.+.+.+.++ ||.+..+..+..+++++++++.+.+.+|.+....
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~ 265 (322)
T PRK13762 206 AWERILETLELLPSKKTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYS 265 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCc
Confidence 78999999999999811244555555 4445555558899999999999999888876654
No 135
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.70 E-value=4.1e-07 Score=88.17 Aligned_cols=199 Identities=18% Similarity=0.311 Sum_probs=131.0
Q ss_pred cceEEEEEeC--CCCCCCccccccccc-----------cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC
Q 012929 190 NKFVEILPIN--VGCLGACTYCKTKHA-----------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256 (453)
Q Consensus 190 ~~~~~~i~is--rGC~~~CsFC~~~~~-----------rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~ 256 (453)
+...+++.+. .||...|+||..... |+.+-..+.+++++-+..-.. ..+.|.+.-. +|+.. .
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i---~~p~~-~ 101 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQI---AYPRA-L 101 (339)
T ss_pred ccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceee---ccccc-c
Confidence 3456777777 899999999976431 111223344555444433221 2344443221 23222 1
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEE-ecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC----CCCHHH
Q 012929 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSD 331 (453)
Q Consensus 257 ~~l~~Ll~~l~~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R----~~t~e~ 331 (453)
.++...++++.-.. + ..+.++ .+.+....+++ ....+ .+..++.++++..+.++++++.| +++.+.
T Consensus 102 ~d~~~i~~~~~~~~---~-~~itiseci~~~~~~~~l---~e~~k--lg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~ 172 (339)
T COG2516 102 NDLKLILERLHIRL---G-DPITISECITAVSLKEEL---EEYRK--LGADYLGVAEDAANEELFEKVRKTSGSPHSWER 172 (339)
T ss_pred chhhhhhhhhhhcc---C-CceehhhhhhcccchHHH---HHHHh--cchhhhhHHHHhcCHHHHHHHHhccCCCCcHHH
Confidence 24455666665222 1 223332 12333333333 33333 23468899999999999988855 478999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH------HHHHHHHHHHH
Q 012929 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL------NLDSTELLSLL 404 (453)
Q Consensus 332 ~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~------~~R~~~l~~~~ 404 (453)
+.+.++++.++++.-.+...+|+|+ |||+.++.+++-.+...+. .+++|.|.|..||.+- -+|+++.+...
T Consensus 173 ~~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~ 249 (339)
T COG2516 173 YWEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKPPPVERYRKIQVAR 249 (339)
T ss_pred HHHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCCCcHHHHHHHHHHH
Confidence 9999999999998788999999995 9999999999999999875 7999999999999998 56666655554
No 136
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=84.15 Aligned_cols=200 Identities=19% Similarity=0.239 Sum_probs=127.7
Q ss_pred CCCCCCCccccccccccCc-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCc-
Q 012929 199 NVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST- 276 (453)
Q Consensus 199 srGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~- 276 (453)
+.-|-+.|.||+....... -...++++|++---.+.+..+-|=.|++.-+... .| ....++++-+ ..+.-....
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~D--yTmE~mi~va-r~LRle~~f~ 136 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-PD--YTMEEMIEVA-RILRLEHKFR 136 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccC-cc--hHHHHHHHHH-HHHhhccccC
Confidence 4559999999998654433 3566899999887777766544433443222221 12 1223333222 222100211
Q ss_pred -eEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC------------
Q 012929 277 -MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV------------ 343 (453)
Q Consensus 277 -~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~------------ 343 (453)
.|.+- +-|.. .+.+ +.+ .+-.+.++++.+|...++.|+.+--.-+.-++.+...+++..+
T Consensus 137 GYIHlK-~IPga-s~~l--i~e---aglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~ 209 (404)
T COG4277 137 GYIHLK-IIPGA-SPDL--IKE---AGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRH 209 (404)
T ss_pred cEEEEE-ecCCC-CHHH--HHH---HhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhcc
Confidence 22222 22332 2222 222 2235689999999999999999977666778888887777621
Q ss_pred -CCc---EEEEEEEEeCCCCCHHHHHHHHHHH-HhcCCCeEEEEecccCCCCHhH------HHHHHHHHHHH--HHhhh
Q 012929 344 -PGM---QIATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGIQFL------NLDSTELLSLL--FSNYK 409 (453)
Q Consensus 344 -pgi---~v~~~~IvG~PgET~ed~~~tl~~i-~~l~~~~i~i~~~sp~pGT~~~------~~R~~~l~~~~--~~~~~ 409 (453)
|.+ .-+|-+|+|-.|||++++...-+.+ .+..+.+++++.|+|.|+||+- --|..+|.+.. .+.|.
T Consensus 210 tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQADwLlrfYg 288 (404)
T COG4277 210 TPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQADWLLRFYG 288 (404)
T ss_pred CccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcccCCchhHHHHHHHHHHHHHHhC
Confidence 222 2568999999999999988776655 5678899999999999999887 45666676666 55555
No 137
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.53 E-value=1.5e-07 Score=87.77 Aligned_cols=176 Identities=18% Similarity=0.312 Sum_probs=115.4
Q ss_pred CCCCCCCccccccccc--cC--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCC
Q 012929 199 NVGCLGACTYCKTKHA--RG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELP 271 (453)
Q Consensus 199 srGC~~~CsFC~~~~~--rg--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---~~~l~~Ll~~l~~~i~ 271 (453)
+-||.-.|.||....- .| -.+....++|+++.+...+.|...+.+.. +| +|. ...|..+++.+.+ +.
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGa----AW-RD~~GRk~~fk~IlE~ike-vr 164 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGA----AW-RDMKGRKSAFKRILEMIKE-VR 164 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecch----hh-hhhccchhHHHHHHHHHHH-HH
Confidence 5689999999987532 23 25778999999999999999998887643 22 221 2456666666654 32
Q ss_pred CCCC-ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEE
Q 012929 272 PDGS-TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350 (453)
Q Consensus 272 ~~~~-~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~ 350 (453)
..+. .-+.+++++.. . ..++.. .+.....-.+.+ |.+-...+--.-+.++-++.|+.++++ ||.+.+
T Consensus 165 ~MgmEvCvTLGMv~~q-----Q--AkeLKd--AGLTAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~a--GikvCs 232 (380)
T KOG2900|consen 165 DMGMEVCVTLGMVDQQ-----Q--AKELKD--AGLTAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREA--GIKVCS 232 (380)
T ss_pred cCCceeeeeeccccHH-----H--HHHHHh--ccceecccCccc-hhhhhcccceecchHHHHHHHHHHHHh--cceecc
Confidence 1011 12344444422 1 222222 222222333433 223333332334678999999999999 999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhc--CCCeEEEEecccCCCCHhH
Q 012929 351 DIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l--~~~~i~i~~~sp~pGT~~~ 393 (453)
.=|+|+ ||.++|..-.+-.+..+ .+..+-++.+.+.+|||+.
T Consensus 233 GGIlGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~ 276 (380)
T KOG2900|consen 233 GGILGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMA 276 (380)
T ss_pred cccccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccc
Confidence 999999 99999976665555555 3678889999999999999
No 138
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.44 E-value=2.1e-05 Score=77.92 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=139.6
Q ss_pred ccceEEEEEeCCCCCCCccccccccccCcc-ccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 189 RNKFVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 189 ~~~~~~~i~isrGC~~~CsFC~~~~~rg~~-rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
+.+.++.+.++.+|+-.|.||.-..+.|.. ...+.+++-.-+.++.+. -+++|.|+|.|..... + ..+..|+++|
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls-~--~~L~~ll~~L 184 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLS-D--KKLEWLLKRL 184 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccC-H--HHHHHHHHHH
Confidence 446677899999999999999877665542 235888988888888877 7899999998877652 2 4678899998
Q ss_pred HHhCCCCCCceEEEEe----cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 012929 267 VAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~ 342 (453)
.+ ++ ....+||++ ..|..+++++ .+++.....-.++..=+.|..+ -..+..+++++++++
T Consensus 185 ~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~L---~~~l~~~~~~v~~~tH~NHp~E----------it~e~~~A~~~L~~a 248 (369)
T COG1509 185 RA-IP--HVKIIRIGTRLPVVLPQRITDEL---CEILGKSRKPVWLVTHFNHPNE----------ITPEAREACAKLRDA 248 (369)
T ss_pred hc-CC--ceeEEEeecccceechhhccHHH---HHHHhccCceEEEEcccCChhh----------cCHHHHHHHHHHHHc
Confidence 65 66 788999986 4566777665 3333331111233332333222 136788999999999
Q ss_pred CCCcEEE--EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHH
Q 012929 343 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLS 402 (453)
Q Consensus 343 ~pgi~v~--~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~ 402 (453)
|+.+. +=++-|. +++.+.+.+.++-+..+++---++|..-+.+|+.-+ -.+...+.+
T Consensus 249 --Gv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~ 310 (369)
T COG1509 249 --GVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVE 310 (369)
T ss_pred --Cceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHH
Confidence 97654 4566666 899999999999999999888889999999999887 444444443
No 139
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.4e-05 Score=78.93 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=126.1
Q ss_pred EEEeCCCCCCCccccccccccCcccc-----CCHHHHHHHHHHHHH-CCC-cEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHARGHLGS-----YTVESLVGRVRTVIA-DGV-KEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~~rs-----r~~e~Iv~Ei~~l~~-~G~-~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
.+..-+||.+.|.||....+.+.... ...+.+++.++.-.. .+. ...+.+|-++-.|.... .-..+.+.+.
T Consensus 32 ~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E--~~~~ltR~il 109 (297)
T COG1533 32 TLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIE--KEYRLTRKIL 109 (297)
T ss_pred ecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcch--HHHHHHHHHH
Confidence 57788999999999998766554322 233457777776554 233 33455566666775521 1133444444
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhCCCc
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~-t~e~~~~~i~~lr~~~pgi 346 (453)
+.+.+ ....+.+. +-...+..+++.+..+..... -.+.+.+-+.++++.+.+--+. +.++-.++++.+.++ |+
T Consensus 110 ei~~~-~~~~v~I~-TKS~lv~RDld~l~~~~~~~~--v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--Gi 183 (297)
T COG1533 110 EILLK-YGFPVSIV-TKSALVLRDLDLLLELAERGK--VRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--GI 183 (297)
T ss_pred HHHHH-cCCcEEEE-ECCcchhhhHHHHHhhhhccc--eEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--CC
Confidence 33211 23445555 333335556655665554332 3678888888888888887655 789999999999999 98
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 347 ~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
.+...+-==+|+.|++++++.++-+.+.+...+..+.+.-..++
T Consensus 184 ~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~~ 227 (297)
T COG1533 184 PVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLDI 227 (297)
T ss_pred eEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHHH
Confidence 88777766679999999999999999999888776666555554
No 140
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.43 E-value=2.6e-05 Score=78.43 Aligned_cols=179 Identities=12% Similarity=0.176 Sum_probs=124.9
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCC-CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G-~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
+....+.++.-|+.+|.||..........-.+.++..+.+..+.+.| ..-+.+.|.+.... .++.++++.+.+.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~~ 92 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARKK 92 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhhc
Confidence 45567889999999999998765433134556677766677777888 77777777555443 4667777777542
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHH-HHhhcCCCCHHHHHHHHHHHHHhCCCcEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~v-Lk~m~R~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
......+. ++...+++.. +..+.. .+..++.+.+++..++. ....++....+...+.++.+++. |+.
T Consensus 93 ----~~~~~~~~-TnG~~~~~~~--~~~l~~--~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~- 160 (347)
T COG0535 93 ----GGIRVSLS-TNGTLLTEEV--LEKLKE--AGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GIL- 160 (347)
T ss_pred ----CCeEEEEe-CCCccCCHHH--HHHHHh--cCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCe-
Confidence 12223332 3432244333 333333 35689999999999999 45555577889999999999988 876
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~ 387 (453)
..+.+-.+..+.+++.+.++++.+++.....++.+.|.
T Consensus 161 -~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~ 198 (347)
T COG0535 161 -VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPV 198 (347)
T ss_pred -eeEEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeec
Confidence 33444445789999999999999999888888887764
No 141
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.28 E-value=5.7e-05 Score=77.69 Aligned_cols=165 Identities=15% Similarity=0.160 Sum_probs=111.2
Q ss_pred CCccccccccccCccccCCHHHHHHHHHHHHHC---CCcEEEEeec-CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE
Q 012929 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (453)
Q Consensus 204 ~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~-d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir 279 (453)
+.|-||......-.-+..++++|+++++..... ....+.|.|. +...| ..+.+|++.+.+. +. .+.
T Consensus 37 ~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~~----gi-~ta 106 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSDL----GL-PIH 106 (404)
T ss_pred CCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHhC----CC-CEE
Confidence 367788654333345778999999999986542 3456777664 33333 4678888888653 33 245
Q ss_pred EEecCCc-ChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC
Q 012929 280 IGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (453)
Q Consensus 280 ~~~~~p~-~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg 358 (453)
+.+++.. ..+++. +.+++.. +...+.+.+.|.++++.+.|-..-..+.+.+.++.+.+. ..+.+..-+|=|+ .
T Consensus 107 I~~TnG~~l~~~e~--~~~L~~~--gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlIPGi-N 180 (404)
T TIGR03278 107 LGYTSGKGFDDPEI--AEFLIDN--GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVIIPGV-N 180 (404)
T ss_pred EeCCCCcccCCHHH--HHHHHHc--CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEeCCc-c
Confidence 5434533 223332 4555543 347899999999999998865544558899999999885 3355555555444 3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEecc
Q 012929 359 ETDEDFNQTVNLIKEYKFPQVHISQFY 385 (453)
Q Consensus 359 ET~ed~~~tl~~i~~l~~~~i~i~~~s 385 (453)
++ +++.++++++.++++..+++.+|-
T Consensus 181 D~-eel~~ti~~L~~lg~~~V~L~~y~ 206 (404)
T TIGR03278 181 DG-DVLWKTCADLESWGAKALILMRFA 206 (404)
T ss_pred Cc-HHHHHHHHHHHHCCCCEEEEEecc
Confidence 33 444799999999999999999996
No 142
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.26 E-value=4.2e-05 Score=73.46 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=89.6
Q ss_pred EEEeCCCCCCCcccccccccc-----CccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 195 ILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~r-----g~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
||.+ .||+.+|.||..+... +.++..+.+++++++..+...|++.|.|+|.+...+ ..+.+|++.+.+.
T Consensus 26 FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~~~ 99 (238)
T TIGR03365 26 FVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGKAK 99 (238)
T ss_pred EEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHHHC
Confidence 4554 5999999999987532 123457999999999988766889999998666554 3578888888652
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~ 349 (453)
+ ..+.+. +|.....+. +. . +.++.+.+-..+. +.....+...+.++.+++ +....
T Consensus 100 ----g-~~v~le-TNGtl~~~~---l~---~----~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~---~~~~~ 154 (238)
T TIGR03365 100 ----G-YRFALE-TQGSVWQDW---FR---D----LDDLTLSPKPPSS------GMETDWQALDDCIERLDD---GPQTS 154 (238)
T ss_pred ----C-CCEEEE-CCCCCcHHH---Hh---h----CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh---cCceE
Confidence 3 245554 454433321 11 1 2355666654433 112235666667777765 45666
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
.-|+++ ++.|++...++.....
T Consensus 155 vK~Vv~----~~~d~~~a~~~~~~~~ 176 (238)
T TIGR03365 155 LKVVVF----DDADYAYAKEVHARYP 176 (238)
T ss_pred EEEEEC----CcccHHHHHHHHHhcC
Confidence 677777 2333555555555443
No 143
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.24 E-value=6e-05 Score=78.26 Aligned_cols=180 Identities=11% Similarity=0.084 Sum_probs=113.1
Q ss_pred eEEEEE-eCCCCCCCccccccccccC-----ccccCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHHH
Q 012929 192 FVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPIL 262 (453)
Q Consensus 192 ~~~~i~-isrGC~~~CsFC~~~~~rg-----~~rsr~~e~Iv~Ei~~l~~~-G~~e--I~l~~~d~~~yg~d~~~~l~~L 262 (453)
....++ ++..|+.+|+||......+ .....+.+.+.+-|+.+.+. +... |.|.|......+.. .+.++
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~---~~~~~ 89 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLS---FYKKA 89 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHH---HHHHH
Confidence 344556 5578999999999743211 12346777777667776654 5444 45566555544221 12333
Q ss_pred HHHHHHhCCCCCCceEEEEe-cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC----CCCHHHHHHHHH
Q 012929 263 LNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVD 337 (453)
Q Consensus 263 l~~l~~~i~~~~~~~ir~~~-~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R----~~t~e~~~~~i~ 337 (453)
++-+.+.. ....+.+.. +|...++++. +..+.+. .+ .|.+.+.+. +++-+..++ ..+.+.+.+.++
T Consensus 90 ~~~~~~~~---~~~~i~~~i~TNG~ll~~e~--~~~l~~~-~~--~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~ 160 (412)
T PRK13745 90 LELQKKYA---RGRQIDNCIQTNGTLLTDEW--CEFFREN-NF--LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGIN 160 (412)
T ss_pred HHHHHHHc---CCCceEEEEeecCEeCCHHH--HHHHHHc-Ce--EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHH
Confidence 33222211 122344432 5776777654 3333333 33 788889875 566655543 248899999999
Q ss_pred HHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC
Q 012929 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (453)
Q Consensus 338 ~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~ 387 (453)
.++++ |+.+.+-..+. .++.+...+.++++.++++..+++.++.|.
T Consensus 161 ~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 161 LLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 99999 88766554444 567788889999999999999999888873
No 144
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.20 E-value=8.3e-05 Score=73.63 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 220 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~---~G~~eI~l~~~d~~~yg~d~~~~l-~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
..+.+++++++..... .+...|.|+|.+.+.+ .++ .++++.+.+. +. .+.+. ++.....+. +
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~l~~l~~~~k~~----g~-~~~i~-TnG~~~~~~---~ 170 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-----PEFALALLQACHER----GI-HTAVE-TSGFTPWET---I 170 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-----HHHHHHHHHHHHHc----CC-cEeee-CCCCCCHHH---H
Confidence 4578888888876432 2445688887554433 233 4666666542 32 33333 333222233 3
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
.+++.. ...+.+.+.+.+++..+.+.. .+.+.+.+.++.+.+....+.+.+-+|-|+ .++.+++.+.++++.+++
T Consensus 171 ~~ll~~---~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~ 245 (295)
T TIGR02494 171 EKVLPY---VDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLRKLE 245 (295)
T ss_pred HHHHhh---CCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHHHhc
Confidence 333331 346678899999988877644 467888999999999822244555566665 578899999999999998
Q ss_pred --CCeEEEEecccCCCCHh
Q 012929 376 --FPQVHISQFYPRPGIQF 392 (453)
Q Consensus 376 --~~~i~i~~~sp~pGT~~ 392 (453)
+..+++.+|.|.+..+.
T Consensus 246 ~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 246 PGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred cCCceEEecCCCchhHHHH
Confidence 67899999988776654
No 145
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=98.04 E-value=2.4e-05 Score=67.42 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEEEEccccCCchhh--hcCCccE-EEcCCChhHHHHHHHHHhcC
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRDL--KELEGVS-IVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~vVvgGc~a~~~~e~--~~~~~d~-vvG~~~~~~l~~~l~~~~~g 168 (453)
.++|+|++ ||.+++. ..+.++++.+|+.+ .+||+||.+++..|+. .....|. +.|+++ ..++++++....|
T Consensus 38 ~~pdiv~~-S~~~~~~--~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g 113 (127)
T cd02068 38 LKPDVVGI-SLMTSAI--YEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEG 113 (127)
T ss_pred cCCCEEEE-eeccccH--HHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcC
Confidence 57899999 6666543 25667777777654 7899999999999974 3335675 779887 5899999887665
Q ss_pred C
Q 012929 169 H 169 (453)
Q Consensus 169 ~ 169 (453)
.
T Consensus 114 ~ 114 (127)
T cd02068 114 E 114 (127)
T ss_pred C
Confidence 3
No 146
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00022 Score=69.29 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=109.5
Q ss_pred EEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHH-HHH--HCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TVI--ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~-~l~--~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
..++-...||+++|.||..+.....-+..+.+++..|+- ... ..+..-|.+++.+.+.. ..-+.++++...+.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q----~e~~~~~~~~ake~ 111 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQ----AEFALDLLRAAKER 111 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhh----HHHHHHHHHHHHHC
Confidence 456678899999999999886553223344444443332 221 22567788876444332 11234555555442
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc--E
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--Q 347 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi--~ 347 (453)
| -...+. ++ ..+.+.. +..++. .+..+.+-+=..+++..+..- +.+.+.+.+.++.+.+. |+ .
T Consensus 112 ----G-l~~~l~-Tn-G~~~~~~--~~~l~~---~~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~ve 176 (260)
T COG1180 112 ----G-LHVALD-TN-GFLPPEA--LEELLP---LLDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVHVE 176 (260)
T ss_pred ----C-CcEEEE-cC-CCCCHHH--HHHHHh---hcCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCeEE
Confidence 2 223332 22 2233332 222322 246788889999999665554 33449999999999997 64 4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEeccc------CCCCHhH
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYP------RPGIQFL 393 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~-~~~i~i~~~sp------~pGT~~~ 393 (453)
+++-+|=|+ ++.++++++..+|+.++. ...+++.+|.| .|.|+.+
T Consensus 177 ~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~ 228 (260)
T COG1180 177 IRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVE 228 (260)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHH
Confidence 556666555 578999999999999763 34566666654 4556654
No 147
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.03 E-value=0.0003 Score=71.94 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=105.7
Q ss_pred EEEeCCCCCCCccccccccccC-c----cccCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHARG-H----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg-~----~rsr~~e~Iv~Ei~~l~~~--G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
.++++.+|+.+|.||..+.... + ....+.+.+..-++.+.+. +...|.|+|........+ .+.++++.+.
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~---~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLE---FFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChH---HHHHHHHHHH
Confidence 4455689999999998764211 1 1234555444455555544 455678887554443111 1235555444
Q ss_pred HhCCCCCCceEEEE-ecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHh
Q 012929 268 AELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 268 ~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R----~~t~e~~~~~i~~lr~~ 342 (453)
+. .. ....+.++ .+|...++++. +..+.+ .. . .+.+.+.+. +++...+++ +.+.+.+.+.++.+++.
T Consensus 85 ~~-~~-~~~~~~~~i~TNG~ll~~~~--~~~l~~-~~-~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~ 156 (370)
T PRK13758 85 KH-NY-KNLKIYNSLQTNGTLIDESW--AKFLSE-NK-F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKY 156 (370)
T ss_pred Hh-cc-CCCeEEEEEEecCEecCHHH--HHHHHH-cC-c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHh
Confidence 32 10 11122222 25665666554 333333 22 2 788889886 566666653 45789999999999998
Q ss_pred CCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 343 ~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
|+.+..-+.+. ..+.+++.+.++++.++++..+.+..
T Consensus 157 --~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 157 --KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred --CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 77666666665 35678899999999999998776653
No 148
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.89 E-value=6.9e-05 Score=63.70 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--
Q 012929 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-- 124 (453)
Q Consensus 61 ~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-- 124 (453)
+-+.+.+=..-..-..++++.|++.||++... ...+|+|++ ||+.+. ....+.++++.+|+.
T Consensus 3 v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~i-S~~~~~-~~~~~~~l~~~~k~~~p 80 (121)
T PF02310_consen 3 VVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGI-SVSMTP-NLPEAKRLARAIKERNP 80 (121)
T ss_dssp EEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEE-EESSST-HHHHHHHHHHHHHTTCT
T ss_pred EEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEE-EccCcC-cHHHHHHHHHHHHhcCC
Confidence 33444444444455677888888888876421 347899999 443332 234567777877766
Q ss_pred CCCEEEEccccCCchhh--hc-CCccE-EEcCCChhHHHHHH
Q 012929 125 KKPLVVAGCVPQGSRDL--KE-LEGVS-IVGVQQIDRVVEVV 162 (453)
Q Consensus 125 ~~~vVvgGc~a~~~~e~--~~-~~~d~-vvG~~~~~~l~~~l 162 (453)
+.+||+||.+++..|+. .. ...|. ++|+++. .+++++
T Consensus 81 ~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE~-~~~~l~ 121 (121)
T PF02310_consen 81 NIPIVVGGPHATADPEEILREYPGIDYVVRGEGEE-AFPELL 121 (121)
T ss_dssp TSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTSS-HHHH--
T ss_pred CCEEEEECCchhcChHHHhccCcCcceecCCChHH-hhcccC
Confidence 45899999999999973 33 44464 8899984 676653
No 149
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.83 E-value=0.00025 Score=71.56 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=118.3
Q ss_pred CCCC---ccccccccccCccccCCHHHHHHHHHHHHHCCCc---EEE-EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 012929 202 CLGA---CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK---EVW-LSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (453)
Q Consensus 202 C~~~---CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~---eI~-l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (453)
|... |.||.....--.--..|+..|.+|...-.-.+.. .+. -.+.+++.| .++.++.++..... .
T Consensus 37 c~~~~~~C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~---~ 108 (414)
T COG1625 37 CIPYRFGCDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYY---K 108 (414)
T ss_pred CCCccccccceeeEEecccCCCCCHhHhhcccccccccccccccceeecCCCCcccC-----cchhhhhhHHHhhc---C
Confidence 5555 9999876432222566788888887531111111 111 122233333 46677777776643 3
Q ss_pred CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Q 012929 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354 (453)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv 354 (453)
+.|+|++++.-..+...- ....+.. .+..-+.+.++|.++++.+.|-|....++..+.+.++.++ .+.+.+++++
T Consensus 109 d~~~rL~~tsG~~~~lt~-~~~~i~~--~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl 183 (414)
T COG1625 109 DDDIRLSFTSGSGFTLTN-RAERIID--AGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVL 183 (414)
T ss_pred Cccceeeeeeccceeccc-hHHHHHH--cCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEE
Confidence 678899887655443211 1222333 3558899999999999999998999999999999999999 9999999887
Q ss_pred eCCCCC-HHHHHHHHHHHHhcCCCeEEEEeccc
Q 012929 355 GFPGET-DEDFNQTVNLIKEYKFPQVHISQFYP 386 (453)
Q Consensus 355 G~PgET-~ed~~~tl~~i~~l~~~~i~i~~~sp 386 (453)
= ||=+ -+++.+|++-+.+++...+.++.+.|
T Consensus 184 ~-PGvNdge~L~kT~~dL~~~g~~~~~~~~~~p 215 (414)
T COG1625 184 C-PGVNDGEELEKTLEDLEEWGAHEVILMRVVP 215 (414)
T ss_pred c-CCcCcHHHHHHHHHHHHHhCcCceeEEEeec
Confidence 5 8888 89999999999999988777775444
No 150
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.81 E-value=0.00055 Score=69.92 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=112.3
Q ss_pred CCCCccccccccccCccccCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceE
Q 012929 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~-G~~e--I~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~i 278 (453)
|+.+|.||..+......+..+.+.+.+-++.+.+. +.+. |.+.|......|. .+.+.+..+.+... ...++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~----~f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGL----DFYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchH----HHHHHHHHHHHHHh--cCCee
Confidence 99999999987543323346666666666666655 4455 4555544444332 34444444443333 24555
Q ss_pred EEEe-cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc----CCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Q 012929 279 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN----REYTLSDFRTVVDTLIELVPGMQIATDII 353 (453)
Q Consensus 279 r~~~-~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~----R~~t~e~~~~~i~~lr~~~pgi~v~~~~I 353 (453)
..++ +|...++++. .+.++...+ .|.+.|.. ..++-+..+ -.-|.+.+.+.++.+++. ++.+.+-+.
T Consensus 92 ~~siqTNg~LL~~e~---~e~l~~~~~--~IgISiDG-p~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v 163 (378)
T COG0641 92 SNALQTNGTLLNDEW---AEFLAEHDF--LIGISIDG-PEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV 163 (378)
T ss_pred EEEEEEcccccCHHH---HHHHHhcCc--eEEEeccC-chHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE
Confidence 5443 5666677664 344443333 56666653 345544443 234899999999999998 888776666
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
..-++.+...+.++++.+.+...+.+.+..+..++-
T Consensus 164 --v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~ 199 (378)
T COG0641 164 --VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRG 199 (378)
T ss_pred --EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCC
Confidence 668999999999999999998888887777666654
No 151
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.51 E-value=0.0023 Score=62.90 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=114.2
Q ss_pred cccCCHHHHHHHHHHHHHCCC----cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC---------------CC--CCc
Q 012929 218 LGSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP---------------PD--GST 276 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~----~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~---------------~~--~~~ 276 (453)
.|+-|.++--..+++|...|. .|+++.|..|-+...+.. ..+++.+...+. .+ .-.
T Consensus 147 aRYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YR---d~FI~nLHdALSGhts~~v~EAv~yse~s~tKCi 223 (554)
T KOG2535|consen 147 ARYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYR---DYFIRNLHDALSGHTSANVEEAVKYSERSLTKCI 223 (554)
T ss_pred HhcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHH---HHHHHHHHHHhcCCCccCHHHHHHhhhhccceee
Confidence 355677888888888877653 355666766655432211 011222211111 00 111
Q ss_pred eEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC
Q 012929 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (453)
Q Consensus 277 ~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~ 356 (453)
.+.+. +.|+.-...- +.+|+. -+|.++.||+||.-+++-+.-||++|+..+-+.+...+++ |..+.+.+|-.+
T Consensus 224 GiTIE-TRPDyC~~~H--l~~ML~--YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdL 296 (554)
T KOG2535|consen 224 GITIE-TRPDYCLKRH--LSDMLT--YGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDL 296 (554)
T ss_pred eEEee-cCcccchhhh--HHHHHh--cCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCC
Confidence 23343 5677544322 455555 5789999999999999999999999999999999999999 999999999999
Q ss_pred CCCC-HHHHHHHHHHHHhc--CCCeEEEEecccCCCCHhH
Q 012929 357 PGET-DEDFNQTVNLIKEY--KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 357 PgET-~ed~~~tl~~i~~l--~~~~i~i~~~sp~pGT~~~ 393 (453)
|+-. +.|+++..++.+.- +.|.+.+++--...||-+|
T Consensus 297 PNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLy 336 (554)
T KOG2535|consen 297 PNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLY 336 (554)
T ss_pred CCCchhhhHHHHHHHhcCcCcCCCcceecceEEEecccHH
Confidence 9855 45677777777654 4577888888889999888
No 152
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.49 E-value=0.0015 Score=56.81 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=74.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.||.+-|.|...-..-...++..|+..||++++. .++||+|+| |+........+..+++++++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhc
Confidence 5788889999888888899999999999999875 568999999 344433445577778888776
Q ss_pred C---CCEEEEccccCCch-hhhcCCccEEEcCCChhHHHHHHHH
Q 012929 125 K---KPLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 125 ~---~~vVvgGc~a~~~~-e~~~~~~d~vvG~~~~~~l~~~l~~ 164 (453)
+ .+|++||-.+...- ++.++..|.+++.+. .+.+++..
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~~ 122 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAIF 122 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHHH
Confidence 4 46889997665432 355666678888776 35555443
No 153
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.25 E-value=0.019 Score=54.19 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=101.0
Q ss_pred ccCCHHHHHHHHHHHH---HCCCcEEEEeecCCCCCCCCcCCC-HHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHH
Q 012929 219 GSYTVESLVGRVRTVI---ADGVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~---~~G~~eI~l~~~d~~~yg~d~~~~-l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~ 294 (453)
+..++++|++++.... +.+-.-|.|+|.+...+ .. +.++++.+.+. +. .+.+. ++- ..+...
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq-----~~fl~~l~~~~k~~----gi-~~~le-TnG-~~~~~~-- 82 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ-----AEFATRFLQRLRLW----GV-SCAIE-TAG-DAPASK-- 82 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC-----HHHHHHHHHHHHHc----CC-CEEEE-CCC-CCCHHH--
Confidence 4579999999988743 22334578877555443 22 35666666442 32 33443 222 122211
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+..++. .+..+.+-+=+.+++..+..- +.+.+.+.+.++.+.+....+.+.+-+|=|+ .+++|++++..+|+.++
T Consensus 83 ~~~l~~---~~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l 157 (213)
T PRK10076 83 LLPLAK---LCDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPL 157 (213)
T ss_pred HHHHHH---hcCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHc
Confidence 333332 345677888888888777764 3568899999999999833367888899777 68899999999999999
Q ss_pred CCCeEEEEeccc
Q 012929 375 KFPQVHISQFYP 386 (453)
Q Consensus 375 ~~~~i~i~~~sp 386 (453)
++..+++.+|-|
T Consensus 158 ~~~~~~llpyh~ 169 (213)
T PRK10076 158 GIKQIHLLPFHQ 169 (213)
T ss_pred CCceEEEecCCc
Confidence 888899888887
No 154
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.19 E-value=0.0073 Score=58.36 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=96.7
Q ss_pred CCCCCCccccccccc--cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCce
Q 012929 200 VGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277 (453)
Q Consensus 200 rGC~~~CsFC~~~~~--rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ 277 (453)
.||+++|-||+..-. .|--+...++++.+-+..+.+.|++.|.|++.|.+. .++.+++.+.-... .+..
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp-------~lp~Ile~l~~~~~--~iPv 196 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP-------HLPFILEALRYASE--NIPV 196 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC-------chHHHHHHHHHHhc--CCCE
Confidence 599999999987532 244567788998888888989999999999865443 34555555432211 2222
Q ss_pred EEEEecCCcChhHHHHHHHHHHhCCCCceeeec-ccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEEEEEEEe
Q 012929 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICG 355 (453)
Q Consensus 278 ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~i-glESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG 355 (453)
++-+. .+.+.+. .+++. ++. -+.+ -+-=|+++--.+.-+ +.-.+-..+.+..+.+...|+-+.-=+
T Consensus 197 vwNSn---mY~s~E~---l~lL~--gvV-DiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLV--- 264 (335)
T COG1313 197 VWNSN---MYMSEET---LKLLD--GVV-DIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLV--- 264 (335)
T ss_pred EEecC---CccCHHH---HHHhh--ccc-eeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEe---
Confidence 22221 1233332 22222 221 2222 244567776655544 333566667777777765556666444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEE---Eeccc
Q 012929 356 FPGETDEDFNQTVNLIKEYKFPQVHI---SQFYP 386 (453)
Q Consensus 356 ~PgET~ed~~~tl~~i~~l~~~~i~i---~~~sp 386 (453)
+||.-+.=-...++|+.+.-...+.+ ++|.|
T Consensus 265 lPghlecCTkpI~~wiae~~g~~~~vNiM~QY~P 298 (335)
T COG1313 265 LPGHLECCTKPILRWIAENLGNDVRVNIMFQYRP 298 (335)
T ss_pred cCCchhhccHHHHHHHHHhCCCCeeEEehhhccc
Confidence 46654443566788998876544444 44544
No 155
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0011 Score=62.53 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCCCCccccccccccC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 200 VGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 200 rGC~~~CsFC~~~~~rg-----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
-|||.+|.||..++++. .+...+.++|+++++.+. .+.+.|.|+|.+.... ..+.+|++.+.+
T Consensus 30 ~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~~ 97 (212)
T COG0602 30 AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLKR 97 (212)
T ss_pred CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHHh
Confidence 39999999999886653 467789999999998763 2345899998766322 357888888865
No 156
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=96.86 E-value=0.0022 Score=54.62 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh--C-CCCEEEEccccCCc
Q 012929 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A-KKPLVVAGCVPQGS 138 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~-~~~vVvgGc~a~~~ 138 (453)
-.++..|++.||++... ..++|+|.| ||+.+... ...+.+.++++ . +.+|++||.+++..
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~i-S~~~~~~~--~~~~~~~~~~~~~p~~~~ivvGG~~~t~~ 93 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEALKELGIDIPVVVGGAHPTAD 93 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEE-ecchHhHH--HHHHHHHHHHHhcCCCCeEEEeCCcCCcc
Confidence 44566677777776532 357899999 67766543 23443444433 2 57899999999999
Q ss_pred hhhhcCCccE-EEcCCChhHHHHHHH
Q 012929 139 RDLKELEGVS-IVGVQQIDRVVEVVE 163 (453)
Q Consensus 139 ~e~~~~~~d~-vvG~~~~~~l~~~l~ 163 (453)
|+. ...|. ++|+++. .++++++
T Consensus 94 ~~~--~~~d~~~~Ge~e~-~~~~l~~ 116 (125)
T cd02065 94 PEE--PKVDAVVIGEGEY-AGPALLE 116 (125)
T ss_pred ccc--cccceeeeCCeEE-Eccccch
Confidence 976 33464 7899884 5666553
No 157
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.85 E-value=0.0025 Score=56.46 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCccccccccccCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 012929 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg~--~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (453)
+.+-.-.|||.+|.||..+..... -...+.++++++|+.+. ..+..|.|+|.+ ..+ ..+.+|++.+.+
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 445566799999999999865332 34679999999998865 345779999877 221 346778877765
No 158
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.84 E-value=0.028 Score=48.90 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=63.7
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~ 125 (453)
+|-+=|.|=..--.--..++..|+++||++++. .++||+|.+++-. + .+...+.+.++++++.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~-~-~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY-G-HGEIDCKGLRQKCDEAG 80 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc-c-cCHHHHHHHHHHHHHCC
Confidence 333433333333334467888999999999875 5689999996543 3 33445677777777765
Q ss_pred ---CCEEEEccc--cCCc-h----hhhcCCccEEEcCCC-hhHHHHHHHH
Q 012929 126 ---KPLVVAGCV--PQGS-R----DLKELEGVSIVGVQQ-IDRVVEVVEE 164 (453)
Q Consensus 126 ---~~vVvgGc~--a~~~-~----e~~~~~~d~vvG~~~-~~~l~~~l~~ 164 (453)
++|++||-. +... + .+.++..+.|+|++. .+.+.+.|..
T Consensus 81 l~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 81 LEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred CCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 467799953 3222 2 144556677888765 3445555443
No 159
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.83 E-value=0.0081 Score=51.79 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEcccc--
Q 012929 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVP-- 135 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a-- 135 (453)
-..++..|+++||++++. .++||+|.+++ -.+. +...+.+.++.+++.| .+|++||-.+
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~-L~t~-~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~ 93 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSS-LYGH-GEIDCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec-cccC-CHHHHHHHHHHHHHCCCCCCeEEEECCCCCC
Confidence 356788999999999875 56899999954 3332 3345666666666654 5799999753
Q ss_pred C-Cch----hhhcCCccEEEcCCChhHHHHHHHH
Q 012929 136 Q-GSR----DLKELEGVSIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 136 ~-~~~----e~~~~~~d~vvG~~~~~~l~~~l~~ 164 (453)
. ..+ ++.++..+.++|++. .+.+++.+
T Consensus 94 ~~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 2 222 244556678999876 35555544
No 160
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.79 E-value=0.064 Score=48.07 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=86.3
Q ss_pred CCCCCCCccccccccccC----ccccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 012929 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (453)
Q Consensus 199 srGC~~~CsFC~~~~~rg----~~rsr~~e~Iv~Ei~~l~~-~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (453)
+-||+..|.||-...-+- .....+|++|.+.+..+.+ +|..-+.+.|..... ++ +-+.++++.++
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l-~~-------EHvlevIeLl~-- 117 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPIL-GR-------EHVLEVIELLV-- 117 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccc-cH-------HHHHHHHHhcc--
Confidence 569999999998632111 2456789999998877764 499988887744322 22 22233333222
Q ss_pred CCceEEEEecCCcCh--hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCCcEE
Q 012929 274 GSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 274 ~~~~ir~~~~~p~~i--~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R---~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
. ..+-+. +|...+ +..+ ..++.++..+ .+-+.+--.+++...++.- .+ ..-.+++++.+.+. |+.+
T Consensus 118 ~-~tFvlE-TNG~~~g~drsl--v~el~nr~nv--~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr~L~~~--g~rf 188 (228)
T COG5014 118 N-NTFVLE-TNGLMFGFDRSL--VDELVNRLNV--LVRVSVKGWDPESFEKITGASPEY-FRYQLKALRHLHGK--GHRF 188 (228)
T ss_pred C-ceEEEE-eCCeEEecCHHH--HHHHhcCCce--EEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHHHHHhc--Ccee
Confidence 1 112222 232222 4444 4455565555 5667788889988876642 22 45556777777777 9999
Q ss_pred EEEEEEeCC
Q 012929 349 ATDIICGFP 357 (453)
Q Consensus 349 ~~~~IvG~P 357 (453)
..-++.+|-
T Consensus 189 ~pA~~~~f~ 197 (228)
T COG5014 189 WPAVVYDFF 197 (228)
T ss_pred eehhhhccc
Confidence 999999984
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.78 E-value=0.0066 Score=51.52 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC---CCCEEEEccccCCc
Q 012929 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQGS 138 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~---~~~vVvgGc~a~~~ 138 (453)
-.++..|+..||+++.. ..++|+|+| ||+.+... ..+.++++.+|+. +.+|++||-+++..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~ 94 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL-SGLLTTHM-TLMKEVIEELKEAGLDDIPVLVGGAIVTRD 94 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHcCCCCCeEEEECCCCChh
Confidence 46777888889888653 467899999 66655543 4567777777665 35689999999887
Q ss_pred hh-hhcCCccEEEcCCC
Q 012929 139 RD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 139 ~e-~~~~~~d~vvG~~~ 154 (453)
|+ ..+...|.++..+.
T Consensus 95 ~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 95 FKFLKEIGVDAYFGPAT 111 (119)
T ss_pred HHHHHHcCCeEEECCHH
Confidence 76 44566777887655
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.70 E-value=0.028 Score=49.18 Aligned_cols=105 Identities=16% Similarity=0.266 Sum_probs=71.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
+++-+-|.|.-....--..++..|+++||+++.- ..+||+|.| ||..+. ....+.+.++++++.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~~-~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYGH-GEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCcccc-CHHHHHHHHHHHHhc
Confidence 4666666776666667778888999999999865 567999999 565553 345677778877776
Q ss_pred ---CCCEEEEccccCC--chh-----hhcCCccEEEcC-CChhHHHHHHHHH
Q 012929 125 ---KKPLVVAGCVPQG--SRD-----LKELEGVSIVGV-QQIDRVVEVVEET 165 (453)
Q Consensus 125 ---~~~vVvgGc~a~~--~~e-----~~~~~~d~vvG~-~~~~~l~~~l~~~ 165 (453)
+.+|++||-.+.. .+. +.++..+.|++. ...+.+.+.+...
T Consensus 82 ~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 82 GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 4579999976432 222 334555677764 4455666666543
No 163
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.62 E-value=0.0072 Score=52.44 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred EeCCCCCCCccccccccccCc-cccCCHHHHHHHHHHHH-HCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHh
Q 012929 197 PINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 197 ~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~Ei~~l~-~~G~~eI~l~~~d~~~y-g~d~~~~l~~Ll~~l~~~ 269 (453)
..+.||+.+|.||..+..... ....-..++++++.... +.++..|.|+|.+...+ . ...+.++++.+.+.
T Consensus 10 ~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~---~~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 10 LFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHEN---YDELLEILKYIKEK 82 (139)
T ss_dssp EEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHS---HHHHHHHHHHHHHT
T ss_pred EEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeecc---HhHHHHHHHHHHHh
Confidence 347789999999987655431 21222355556654444 56999999998665541 1 13567777777664
No 164
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.54 E-value=0.095 Score=54.17 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=59.4
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCH-HHHHHHHHHHHhc
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEY 374 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~-ed~~~tl~~i~~l 374 (453)
..-+.+.+.+.+++..+.|-+.-..++..+.++++.++ ||.+++.+++= ||=++ +++++|++.+.++
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVlc-PGiNDg~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVVC-PGINDGKHLERTLRDLAQF 206 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEEc-CCcCCHHHHHHHHHHHHhh
Confidence 35788999999999998887776899999999999999 99999887765 88777 7899999999998
No 165
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=96.43 E-value=0.043 Score=53.94 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=96.3
Q ss_pred EEEeCCCCCCCcccccccccc-Cc-------cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHAR-GH-------LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~r-g~-------~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
.|-++-=||.+|-||-+...+ |+ .--.+.++|+.|+...-+.|+ -++|.|...- -.+..+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTGGdPl~~----ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITGGDPLLE----IERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---cccCCChHHH----HHHHHHHHHHH
Confidence 456677799999999886443 33 112356788888776655554 3555332210 12445666777
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCc
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi 346 (453)
.+++. ....+.+ |++....+++. +..+...+-==.++|.+ ..+. ...+.+.+.+..+++. |+
T Consensus 104 K~efG--~~fHiHL-YT~g~~~~~e~--l~~L~eAGLDEIRfHp~--~~~~---------~~~e~~i~~l~~A~~~--g~ 165 (353)
T COG2108 104 KDEFG--EDFHIHL-YTTGILATEEA--LKALAEAGLDEIRFHPP--RPGS---------KSSEKYIENLKIAKKY--GM 165 (353)
T ss_pred HHhhc--cceeEEE-eeccccCCHHH--HHHHHhCCCCeEEecCC--Cccc---------cccHHHHHHHHHHHHh--Cc
Confidence 66552 2233433 45566666654 55555432212366665 1111 1346788899999998 77
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 347 ~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
.+..- |=..||+ ++.+.+.++++.+.+.+.++++-
T Consensus 166 dvG~E-iPaipg~-e~~i~e~~~~~~~~~~~FlNiNE 200 (353)
T COG2108 166 DVGVE-IPAIPGE-EEAILEFAKALDENGLDFLNINE 200 (353)
T ss_pred cceee-cCCCcch-HHHHHHHHHHHHhcccceeeeee
Confidence 66544 2344654 34566788899999988888864
No 166
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=96.42 E-value=0.0073 Score=44.93 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=27.0
Q ss_pred cccCCeEEEEEEeeeeCCCCeeEEecCCCeEEEEcCC
Q 012929 412 VMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTH 448 (453)
Q Consensus 412 ~~~~G~~~~vlve~~~~~~~~~~g~~~~y~~v~~~~~ 448 (453)
+++ |++++||||+.+ +++.++||+++|..|+|+..
T Consensus 2 ~~~-G~~~~VlVe~~~-~~g~~~gr~~~~~~V~v~~~ 36 (61)
T PF01938_consen 2 SYV-GKTLEVLVEELG-DEGQGIGRTDNGKVVFVPGG 36 (61)
T ss_dssp --T-TEEEEEEEEEE--TTSEEEEEET-TEEEEETT-
T ss_pred ccC-CcEEEEEEEEec-CCCEEEEEeCCCeEEEECCC
Confidence 466 999999999987 45589999999999999875
No 167
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.34 E-value=0.009 Score=50.47 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=30.1
Q ss_pred eCCCCCCCcccccccccc--CccccCCHHHHHHHHHHHHHCCC--cEEEEeecCCCC
Q 012929 198 INVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTGA 250 (453)
Q Consensus 198 isrGC~~~CsFC~~~~~r--g~~rsr~~e~Iv~Ei~~l~~~G~--~eI~l~~~d~~~ 250 (453)
++.+|+.+|.||...... ......+.+.+.+.++.+...+. ..|.|+|.+.+.
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll 60 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLL 60 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGG
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcc
Confidence 478999999999975432 33567788899899888877766 568998855543
No 168
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=96.10 E-value=0.061 Score=47.03 Aligned_cols=103 Identities=18% Similarity=0.347 Sum_probs=72.0
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|-+-++|=.---.-...++..|++.||+++.. .+++|+|+|+ +.-..-..-+-.+++.+|+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvS--sl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVS--SLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEE--eccchHHHHHHHHHHHHHH
Confidence 46888888885555555678999999999999765 5789999994 4433334556677778888
Q ss_pred CCC---CEEEEccccCCch-hhhcCCccEEEcCCChhHHHHHHHH
Q 012929 124 AKK---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 124 ~~~---~vVvgGc~a~~~~-e~~~~~~d~vvG~~~~~~l~~~l~~ 164 (453)
.|. .|++||-.+...- .++++..+.+++++- .+.+.+.+
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt--~~~~~~~~ 132 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGT--PIEEALSD 132 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCC--CHHHHHHH
Confidence 774 4678888876553 356666777888755 34444443
No 169
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.84 E-value=0.67 Score=44.69 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=101.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
....+.++.++-++.+.+.|+..|.+.+......- .......++++.+.+..+ ..++..+.+.. . +.+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~-----~~~~~~l~~~~-~---~~i~~ 82 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP-----NVKLQALVRNR-E---KGIER 82 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC-----CcEEEEEccCc-h---hhHHH
Confidence 45669999999999999999999998764433111 111356778888876432 23332222221 1 12343
Q ss_pred HHhCCCCceeeecccCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeCC-CCCHHHHHHHHHHHHh
Q 012929 298 VLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKE 373 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~-~vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~P-gET~ed~~~tl~~i~~ 373 (453)
+.+. +...+++.+- +|+ ......+|+. ..+...+.++.+++. |+.+..+++.-+. ..+.+.+.+.++.+.+
T Consensus 83 a~~~--g~~~i~i~~~-~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 83 ALEA--GVDEVRIFDS-ASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred HHhC--CcCEEEEEEe-cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 4443 3577888884 454 2334445543 678899999999999 9999999977663 4899999999999999
Q ss_pred cCCCeEEEE
Q 012929 374 YKFPQVHIS 382 (453)
Q Consensus 374 l~~~~i~i~ 382 (453)
++.+.+.+.
T Consensus 158 ~g~~~i~l~ 166 (265)
T cd03174 158 AGADEISLK 166 (265)
T ss_pred cCCCEEEec
Confidence 998877754
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.74 E-value=0.15 Score=43.52 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC---CCEEEEccccCCc
Q 012929 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQGS 138 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~---~~vVvgGc~a~~~ 138 (453)
..++..|+..||+++.. ..+||+|+| ||+-. .....+.++++.+++.+ .++++||-.+...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i-S~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL-SSLSG-GHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cccch-hhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 45566788889998764 467999999 44443 44556788888888774 4678888544322
Q ss_pred hh-hhcCCccEEEcCCC
Q 012929 139 RD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 139 ~e-~~~~~~d~vvG~~~ 154 (453)
.+ +.+...|.+++.+.
T Consensus 95 ~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 95 YELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHCCCCEEECCCC
Confidence 22 34556678887765
No 171
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=95.12 E-value=0.048 Score=52.10 Aligned_cols=180 Identities=17% Similarity=0.285 Sum_probs=116.3
Q ss_pred EEEeCCCCCCCcccccccccc---CccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 195 ILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~r---g~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
-|..+.-|+.+|.||.....+ .+-+....++++.-...+..+|++.+.|++.+.... .| ..+....+.. ++
T Consensus 14 rislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~d----i~~i~~g~~~-l~ 87 (323)
T KOG2876|consen 14 RISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QD----IVPIVAGLSS-LP 87 (323)
T ss_pred hhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-cc----ccchhhhhhc-cc
Confidence 345677899999999986533 235677788999877888888999999998766554 33 2333334432 33
Q ss_pred CCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh--CCCcEEE
Q 012929 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIA 349 (453)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~--~pgi~v~ 349 (453)
+...+.+. ++-..+... +..+ +..+...+.+.+++...+-...+-|..+...+...++...+. .| ..+.
T Consensus 88 --gLks~~IT-tng~vl~R~---lp~l--hkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn 158 (323)
T KOG2876|consen 88 --GLKSIGIT-TNGLVLARL---LPQL--HKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVN 158 (323)
T ss_pred --chhhhcee-ccchhhhhh---hhHH--HhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-ccee
Confidence 44444443 121111122 1221 224557888888888888787787888888899989888865 23 6778
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.-++=|+-+...=||.. +-+.++-.+.+-.|+|.-|-...
T Consensus 159 ~v~~k~~n~~ev~Dfv~----~tr~~p~DVrfIe~mpf~gn~~~ 198 (323)
T KOG2876|consen 159 CVVMKGLNEDEVFDFVL----LTRMRPLDVRFIEFMPFDGNKWN 198 (323)
T ss_pred eEEEeccCCCcccceee----ecCCCCcceEEEEecccCCCccc
Confidence 88888885543333321 23444555777789998887554
No 172
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.87 E-value=0.25 Score=54.80 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=71.6
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCC--------------CCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~--------------~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
.+||.+-|+|...-..-...+...|+..||++.... ++||+|+| |+......+.+..+++.+|+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHh
Confidence 358999999998766667788999999999986542 68999999 44443334457778888888
Q ss_pred CCC---CEEEEccccCCchh-hhcCCccEEEcCCChhHHHHHHHH
Q 012929 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvG~~~~~~l~~~l~~ 164 (453)
.|. +|++||-.+....+ +.+...|.+++.+. .+.++|+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~~ 702 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAID 702 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHHH
Confidence 763 57888875433222 45566677777665 34555443
No 173
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=94.87 E-value=0.098 Score=46.66 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCCCCCCccccccccccC--ccccCC---HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 199 NVGCLGACTYCKTKHARG--HLGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 199 srGC~~~CsFC~~~~~rg--~~rsr~---~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
..|||.+|.||..|..+. .-...+ +++|++++.... .+..|.|+|.+...... ...+.++++.+.+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 379999999999886542 124566 556666654331 35679998866654310 02456777776543
No 174
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.02 E-value=2.5 Score=42.92 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=90.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
-.+.|.++-++-++.|.+.|++.|....- ...... ..+..+.++.+.. .. + . ++..+.+ .. +++
T Consensus 62 g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~--~-~--~~~~l~~--n~---~di 127 (347)
T PLN02746 62 KNIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LE--G-A--RFPVLTP--NL---KGF 127 (347)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-cc--C-C--ceeEEcC--CH---HHH
Confidence 46789999999999999999999987531 111101 1233556666654 22 2 1 2222223 11 224
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHH-hhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEE--EEeCCCCC---HHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGET---DEDFNQT 367 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk-~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~--IvG~PgET---~ed~~~t 367 (453)
...+. .++..+++.+ |.|+.-++ .+|+. ...+.+.++++.+++. |+.+..+| .+|.|.++ .+.+.+.
T Consensus 128 e~A~~--~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~~ 202 (347)
T PLN02746 128 EAAIA--AGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAYV 202 (347)
T ss_pred HHHHH--cCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHHH
Confidence 44443 3557888888 88887664 34443 2445666799999999 98888766 57878764 4556666
Q ss_pred HHHHHhcCCCeEEE
Q 012929 368 VNLIKEYKFPQVHI 381 (453)
Q Consensus 368 l~~i~~l~~~~i~i 381 (453)
++.+.+++.+.+.+
T Consensus 203 ~~~~~~~Gad~I~l 216 (347)
T PLN02746 203 AKELYDMGCYEISL 216 (347)
T ss_pred HHHHHHcCCCEEEe
Confidence 66667778877654
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.99 E-value=0.16 Score=47.28 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEEEEccccC
Q 012929 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVPQ 136 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~----~~vVvgGc~a~ 136 (453)
...++..|+..||++++- ..++|+|.+ ||+.+... ..+.+.++.+|+.+ .+|++||...+
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l-S~~~~~~~-~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL-SALMTTTM-GGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 567788899999998753 468999999 67666553 45777777777664 47999998766
Q ss_pred CchhhhcCCccEEE
Q 012929 137 GSRDLKELEGVSIV 150 (453)
Q Consensus 137 ~~~e~~~~~~d~vv 150 (453)
... ...+..|...
T Consensus 177 ~~~-~~~~GaD~~~ 189 (201)
T cd02070 177 QEF-ADEIGADGYA 189 (201)
T ss_pred HHH-HHHcCCcEEE
Confidence 322 2344445433
No 176
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=93.84 E-value=0.033 Score=56.14 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=42.3
Q ss_pred CCCCCCCC-CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccc
Q 012929 50 SLSPKIPG-TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP 109 (453)
Q Consensus 50 ~~~~~~~~-~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~ 109 (453)
.-.|.+|| ..+..|.|+||..|..|++++.+.|++.||. ++.+-+-+++..
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYd---------v~~lFaysmR~k 437 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYD---------VVFLFAYSMREK 437 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccC---------eeeeEEeeeccc
Confidence 34688999 7899999999999999999999999999984 555546666543
No 177
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=93.27 E-value=0.42 Score=42.62 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCCCCccccccccccCc--cccCC---HHHHHHHHHHHHHCCC--cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 200 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 200 rGC~~~CsFC~~~~~rg~--~rsr~---~e~Iv~Ei~~l~~~G~--~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.|||++|.||..+..+.. -...+ .++|++++. ..+. ..|.|+|.+.... .. ...+.++++++.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHC
Confidence 899999999998765321 11123 334444433 2233 4678887655331 10 023456666665543
No 178
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.57 E-value=4.6 Score=39.84 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=90.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-...+.++.++-++.|.+.|++.|.+.+-....+... -.+-.+.++.+.+ .+ + .++..+.+. ..++..
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-~~d~~e~~~~l~~-~~--~---~~~~~l~~~-----~~~ie~ 87 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQ-MADAAEVMAGIQR-RP--G---VTYAALTPN-----LKGLEA 87 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccc-cccHHHHHHhhhc-cC--C---CeEEEEecC-----HHHHHH
Confidence 4577999999999999999999998752100000000 0123456666643 22 2 233223331 122333
Q ss_pred HHhCCCCceeeecccCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEE--eCCCC---CHHHHHHHHH
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVN 369 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vL-k~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~Iv--G~PgE---T~ed~~~tl~ 369 (453)
..+ .+...+++.+ |.|+..+ +.+++.. ..+.+.++++.+++. |+.+...+.+ |.|.+ +.+.+.+..+
T Consensus 88 A~~--~g~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 88 ALA--AGADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHH--cCCCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 333 3446777765 5555533 5555542 456688899999999 9888877775 55766 6778888888
Q ss_pred HHHhcCCCeEEE
Q 012929 370 LIKEYKFPQVHI 381 (453)
Q Consensus 370 ~i~~l~~~~i~i 381 (453)
.+.+++.+.+.+
T Consensus 163 ~~~~~G~d~i~l 174 (287)
T PRK05692 163 RLFALGCYEISL 174 (287)
T ss_pred HHHHcCCcEEEe
Confidence 888888887654
No 179
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.56 E-value=5.5 Score=38.77 Aligned_cols=142 Identities=12% Similarity=0.059 Sum_probs=92.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-...|.++.++-++.|.+.|++.|.+.. ...+ ....+.++.+.. .. ....+ ..++.+. . +++..
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~-~~--~~~~v-~~~~r~~--~---~di~~ 79 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAK-LG--LKAKI-LTHIRCH--M---DDARI 79 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHh-CC--CCCcE-EEEecCC--H---HHHHH
Confidence 4678999999999999999999999864 2222 234555666653 22 11222 2223332 1 22333
Q ss_pred HHhCCCCceeeecccCCCCHHHHH-hhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLS-AMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk-~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
... .+...+++.+ +.|+..++ .+++. ...+.+.+.++.+++. |+.+..++.-.| +-+.+.+.+.++.+.++
T Consensus 80 a~~--~g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVE--TGVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHH--cCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHc
Confidence 333 3456677666 56766554 34432 2456677788999998 999999998777 44578888888899999
Q ss_pred CCCeEEE
Q 012929 375 KFPQVHI 381 (453)
Q Consensus 375 ~~~~i~i 381 (453)
+.+.+.+
T Consensus 154 g~~~i~l 160 (262)
T cd07948 154 GVNRVGI 160 (262)
T ss_pred CCCEEEE
Confidence 8886654
No 180
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=92.21 E-value=0.46 Score=42.78 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=50.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHH-----HHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~-----~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVvg 131 (453)
..+++.++|+ |-.|.|.++. .++..|+..+..+..||+++| |=+||.+....+.++.++. +.+| |.+|
T Consensus 31 ~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlV-tG~vT~km~~~l~~~yeqm--PePK~VIA~G 105 (173)
T PRK14818 31 SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIV-AGTLTYKMAERARLLYDQM--PEPKYVISMG 105 (173)
T ss_pred CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEE-eCcCccccHHHHHHHHHhC--CCCCEEEEec
Confidence 4567777774 3378887654 356778988999999999999 6688876555555444443 3444 3477
Q ss_pred ccccCCc
Q 012929 132 GCVPQGS 138 (453)
Q Consensus 132 Gc~a~~~ 138 (453)
.|..+.-
T Consensus 106 ~CA~sGG 112 (173)
T PRK14818 106 SCSNCGG 112 (173)
T ss_pred cccccCC
Confidence 7866543
No 181
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=92.11 E-value=0.4 Score=43.61 Aligned_cols=74 Identities=23% Similarity=0.515 Sum_probs=45.9
Q ss_pred eEEEEee--CCCcChhHHHHHHHH-----HHHcCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 60 TIYMKTF--GCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 60 ~~~i~t~--GC~~N~~dse~~~~~-----L~~~g~~~~-~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.++..++ || .|.|.++.. ++..|+..+ ..+..||+++| |=+|+......+.++.+...+....|-+|
T Consensus 42 slw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllV-tG~VT~~m~~~l~~~~e~~p~pK~VIAvG 116 (182)
T PRK14816 42 SLWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMV-CGTITNKMAPVLKRLYDQMADPKYVIAVG 116 (182)
T ss_pred ccceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEE-ecCCcchhHHHHHHHHHhcCCCCEEEEec
Confidence 4555555 56 888887643 456787776 88999999999 66887764333333333322222224478
Q ss_pred ccccCCc
Q 012929 132 GCVPQGS 138 (453)
Q Consensus 132 Gc~a~~~ 138 (453)
-|..+.-
T Consensus 117 sCA~~GG 123 (182)
T PRK14816 117 GCAVSGG 123 (182)
T ss_pred cccccCC
Confidence 8877654
No 182
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=92.03 E-value=0.93 Score=42.13 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=56.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.++-+-|.+=-.-..--..++..|+.+||++++- ...+|+|.+ ||+.+... ..+.+.++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~l-S~~~~~~~-~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTG-SALMTTTM-YGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccccccCH-HHHHHHHHHHHHc
Confidence 4554444433333445567778889999999854 567999999 77777654 3578888888776
Q ss_pred C----CCEEEEccccCCchhh-hcCCcc
Q 012929 125 K----KPLVVAGCVPQGSRDL-KELEGV 147 (453)
Q Consensus 125 ~----~~vVvgGc~a~~~~e~-~~~~~d 147 (453)
+ .+|++||-.. .+++ +++..|
T Consensus 163 ~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 163 GYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred CCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 3 4799999665 3444 344444
No 183
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=91.54 E-value=6.5 Score=38.48 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=88.8
Q ss_pred ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHH
Q 012929 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (453)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~ 294 (453)
...+.|.++-++-++.|.+.|++.|.+.. +.+ ....+ .+..++++.+.. . . ..++..+.+. . ++
T Consensus 13 ~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs--~~~-~~~~p~~~d~~~~~~~l~~-~---~--~~~~~~~~~~--~---~d 78 (274)
T cd07938 13 EKTFIPTEDKIELIDALSAAGLRRIEVTS--FVS-PKWVPQMADAEEVLAGLPR-R---P--GVRYSALVPN--L---RG 78 (274)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCC--CCC-cccccccCCHHHHHhhccc-C---C--CCEEEEECCC--H---HH
Confidence 34678999999999999999999998853 111 11001 123344444432 1 1 2233322221 1 22
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEE--EeCCCC---CHHHHHHH
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQT 367 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~I--vG~PgE---T~ed~~~t 367 (453)
+....+ .+...+++.+-+.+....+.+++. ...+...+.++.+++. |+.+...+. +|.|.+ +.+.+.+.
T Consensus 79 v~~A~~--~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~ 154 (274)
T cd07938 79 AERALA--AGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEV 154 (274)
T ss_pred HHHHHH--cCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHH
Confidence 444443 345677777654444444666664 3457788889999999 988877776 444554 45667777
Q ss_pred HHHHHhcCCCeEEE
Q 012929 368 VNLIKEYKFPQVHI 381 (453)
Q Consensus 368 l~~i~~l~~~~i~i 381 (453)
++.+.+++.+.+.+
T Consensus 155 ~~~~~~~Ga~~i~l 168 (274)
T cd07938 155 AERLLDLGCDEISL 168 (274)
T ss_pred HHHHHHcCCCEEEE
Confidence 77778888877654
No 184
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=90.74 E-value=0.64 Score=40.98 Aligned_cols=73 Identities=26% Similarity=0.473 Sum_probs=41.9
Q ss_pred eEEEEeeC--CCcChhHHHHHHHH-----HHHcC-CeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 60 TIYMKTFG--CSHNQSDSEYMAGQ-----LSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 60 ~~~i~t~G--C~~N~~dse~~~~~-----L~~~g-~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.+++..+| | .|.|.++.. ++..| ...+..+..||+.+| |=+++.+..+.++++-++..+....|.+|
T Consensus 18 s~w~~~~~t~c----C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllV-tG~vt~~~~~~l~~~~e~~p~pk~VIA~G 92 (145)
T TIGR01957 18 SLWPLTFGLAC----CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIV-AGTVTKKMAPALRRLYDQMPEPKWVISMG 92 (145)
T ss_pred CceeeeeCccH----HHHHHHHccCccccHHHhCCceecCCCCcceEEEE-ecCCcHHHHHHHHHHHHhccCCceEEEec
Confidence 34444444 5 688877654 34456 556678899999999 66887764333333322221121223467
Q ss_pred ccccCC
Q 012929 132 GCVPQG 137 (453)
Q Consensus 132 Gc~a~~ 137 (453)
-|....
T Consensus 93 sCA~~G 98 (145)
T TIGR01957 93 ACANSG 98 (145)
T ss_pred ceeecC
Confidence 786554
No 185
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.60 E-value=9 Score=37.05 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=87.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
...+.++.++-++.|.+.|+..|.+.- ...+. .-.+.++.+.+..+ + .++....... .+ .+...
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~----~~~e~~~~l~~~~~--~---~~~~~~~r~~-~~---~v~~a 78 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMGE----EEREAIRAIVALGL--P---ARLIVWCRAV-KE---DIEAA 78 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH----HHHHHHHHHHhcCC--C---CEEEEeccCC-HH---HHHHH
Confidence 567999999999999999999998842 22221 12467777765322 2 2232222111 11 23333
Q ss_pred HhCCCCceeeecccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vL-k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
.. .+...+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++.+. .-+.+.+.+.++.+.+++
T Consensus 79 ~~--~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 152 (259)
T cd07939 79 LR--CGVTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEAG 152 (259)
T ss_pred Hh--CCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHCC
Confidence 33 3456777777 5666544 567653 3456677889999999 987765555443 235777888888888888
Q ss_pred CCeEEE
Q 012929 376 FPQVHI 381 (453)
Q Consensus 376 ~~~i~i 381 (453)
.+.+.+
T Consensus 153 ~~~i~l 158 (259)
T cd07939 153 ADRLRF 158 (259)
T ss_pred CCEEEe
Confidence 876544
No 186
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=90.52 E-value=0.69 Score=43.58 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=50.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.|+-+-|..=-.-.---..++..|+..||++++- ..+||+|.+ ||+.+.. ...+.+.++++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l-S~~~~~~-~~~~~~~i~~L~~~ 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL-SGLLVPS-LDEMVEVAEEMNRR 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccchhcc-HHHHHHHHHHHHhc
Confidence 4554333332223334566778889999999764 467999999 6676654 34677888888776
Q ss_pred C--CCEEEEccccC
Q 012929 125 K--KPLVVAGCVPQ 136 (453)
Q Consensus 125 ~--~~vVvgGc~a~ 136 (453)
+ .+|++||-..+
T Consensus 167 ~~~~~i~vGG~~~~ 180 (213)
T cd02069 167 GIKIPLLIGGAATS 180 (213)
T ss_pred CCCCeEEEEChhcC
Confidence 5 57999995433
No 187
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=89.43 E-value=0.29 Score=44.75 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=44.1
Q ss_pred EEEEeeCCCcChhHHHHHHH-----HHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEcc
Q 012929 61 IYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGC 133 (453)
Q Consensus 61 ~~i~t~GC~~N~~dse~~~~-----~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVvgGc 133 (453)
+++.++|+. -.|.|.++- .|+..|+..+..+..||+++| |=+|+......+.+..++. +.+| |.+|-|
T Consensus 30 lw~~~~~t~--cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllV-tG~Vt~km~~~l~~~y~qm--PePK~VIA~GaC 104 (189)
T PRK14813 30 LWPMGFGLA--CCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIV-AGTVTMKMAERVVRLYEQM--PEPRYVLSMGSC 104 (189)
T ss_pred CceeeeCcc--cHHHHHHHhcccCCCHHHcCCeecCCcccceEEEE-eccCchhhHHHHHHHHHhC--CCCCEEEEeccc
Confidence 444444432 246666543 356778888899999999999 5678776444444444433 2344 346778
Q ss_pred ccC
Q 012929 134 VPQ 136 (453)
Q Consensus 134 ~a~ 136 (453)
..+
T Consensus 105 A~s 107 (189)
T PRK14813 105 SNC 107 (189)
T ss_pred ccC
Confidence 755
No 188
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=88.25 E-value=1.5 Score=36.54 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=37.6
Q ss_pred eEEEEeeC-CCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccc---hHHHHHHHHHHHhhC-CCCEEEE
Q 012929 60 TIYMKTFG-CSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVA 131 (453)
Q Consensus 60 ~~~i~t~G-C~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~---a~~~~~~~i~~~~~~-~~~vVvg 131 (453)
=+.|.|=| |+ ..+....+..|.+.| +|+|-+.||.+... .=....++.+.+++. |.+||.|
T Consensus 40 lvgf~~CgGCp--g~~~~~~~~~l~~~~---------~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 40 LVGFFTCGGCP--GRKLVRRIKKLKKNG---------ADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEEEeeCCCCC--hhHHHHHHHHHHHCC---------CCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 45665555 99 555566666666554 78999999998732 101133344444444 7777765
No 189
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=87.95 E-value=1.1 Score=40.90 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=42.8
Q ss_pred eEEEEeeCCCcChhHHHHHHHHH-----HHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccc
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQL-----SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L-----~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (453)
.+++.++|+. =.|.|.++... +..|...+..+..||+++| |=+++......+.++.+...+....|.+|-|.
T Consensus 36 Slw~~~~~~~--CC~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV-~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA 112 (183)
T PRK06411 36 SLWPLTFGLA--CCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIV-AGTLTNKMAPALRRLYDQMPEPKWVISMGSCA 112 (183)
T ss_pred CccceeeCcc--HhHHHHHHccCccccHHHhCccccCCCCceeEEEE-EeCCCccchHHHHHHHHHcCcCCeEEEEeccc
Confidence 3444444432 18888876543 3456656778899999999 55787764333333322222222234478886
Q ss_pred cCC
Q 012929 135 PQG 137 (453)
Q Consensus 135 a~~ 137 (453)
...
T Consensus 113 ~~G 115 (183)
T PRK06411 113 NSG 115 (183)
T ss_pred ccC
Confidence 654
No 190
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.93 E-value=32 Score=34.68 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=88.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~-----d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~ 293 (453)
...+.+++++-++.|.+.|+..|.+.-. ....||..... =.+.++++.+..+ . ..+.. ++.|..-+. +
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~-~~e~i~~~~~~~~--~-~~~~~-ll~pg~~~~--~ 91 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT-DLEYIEAAADVVK--R-AKVAV-LLLPGIGTV--H 91 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC-hHHHHHHHHHhCC--C-CEEEE-EeccCccCH--H
Confidence 4568999999999999999999988521 12223322112 2466677766543 2 22221 344432121 2
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
++..... .+...+.+..- .++ .+...+.++.+++. |..+...++..+ .-+++.+.+..+.+.+
T Consensus 92 dl~~a~~--~gvd~iri~~~-~~e-----------~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 92 DLKAAYD--AGARTVRVATH-CTE-----------ADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHH--CCCCEEEEEec-cch-----------HHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHHh
Confidence 2443333 23456666552 221 24578999999999 999999888886 5688999999999999
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
.+.+.+.+
T Consensus 155 ~Ga~~i~i 162 (333)
T TIGR03217 155 YGADCVYI 162 (333)
T ss_pred cCCCEEEE
Confidence 99887654
No 191
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=87.54 E-value=1.5 Score=41.86 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=45.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHH-----HHcCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC-E-EE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-L-VV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L-----~~~g~~-~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~-v-Vv 130 (453)
..+++.++|| +-.|.|.++... ...|+. .+..+..||+.+| |=+|+......+.++.+.. ..++ | .+
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLV-tG~VT~km~~~L~rlyeqm--P~PK~VIAv 105 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIV-AGTVTKKMAPQVVRLYNQM--PEPRYVISM 105 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEE-ecCCchhhHHHHHHHHHhc--cCCCeEEEE
Confidence 4567777775 337888877553 345653 4677889999999 5677765433333333322 2333 3 37
Q ss_pred EccccCCc
Q 012929 131 AGCVPQGS 138 (453)
Q Consensus 131 gGc~a~~~ 138 (453)
|-|..+.-
T Consensus 106 GaCA~~GG 113 (264)
T PRK14819 106 GACATSGG 113 (264)
T ss_pred ccccccCC
Confidence 77866543
No 192
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=86.35 E-value=34 Score=35.15 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=88.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
...+.++.++-++.|.+.|+..|.+. +...+. .-.+.++.+.+. +. ..++...... ..+. +..+
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~----~~~e~i~~i~~~----~~-~~~i~~~~r~-~~~d---i~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSE----DEKEAIKAIAKL----GL-NASILALNRA-VKSD---IDAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcCh----HHHHHHHHHHhc----CC-CeEEEEEccc-CHHH---HHHH
Confidence 57799999999999999999999874 222222 124667777653 22 2333322221 1222 3333
Q ss_pred HhCCCCceeeecccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 299 LRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~-vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
.. .+...+++.+ +.|+. +...+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+.+.+.++.+.+.+
T Consensus 85 ~~--~g~~~i~i~~-~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 158 (378)
T PRK11858 85 ID--CGVDAVHIFI-ATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAG 158 (378)
T ss_pred Hh--CCcCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCC
Confidence 33 3456788877 44554 44566653 2456666788899998 988777655443 345777888888888888
Q ss_pred CCeEEEE
Q 012929 376 FPQVHIS 382 (453)
Q Consensus 376 ~~~i~i~ 382 (453)
.+.+.+.
T Consensus 159 a~~I~l~ 165 (378)
T PRK11858 159 ADRVRFC 165 (378)
T ss_pred CCEEEEe
Confidence 8876553
No 193
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=85.82 E-value=2.1 Score=39.00 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=43.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHH-----HHHcCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~-----L~~~g~~~~-~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVv 130 (453)
..+++.++||. =.|.|.++.. +...|+..+ ..+..||+++| |=+|+.+..+.+.++ .+.+ +.+| |-+
T Consensus 33 ~Slw~~~~~~s--CC~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillV-tG~VT~~m~~~l~r~-ye~~-p~pK~VIAv 107 (183)
T PRK14815 33 NSLWPMPMGLA--CCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIV-AGTVTYKMALAVRRI-YDQM-PEPKWVIAM 107 (183)
T ss_pred CCccceeEccc--hHHHHHHHhcCccccHHHhCcccCCCCCccccEEEE-eCcCchhhHHHHHHH-HHhC-CCCCEEEEe
Confidence 35566666553 2788876532 345676554 78899999999 667876533333222 2222 3344 336
Q ss_pred EccccCC
Q 012929 131 AGCVPQG 137 (453)
Q Consensus 131 gGc~a~~ 137 (453)
|.|..+.
T Consensus 108 GsCA~~G 114 (183)
T PRK14815 108 GACASSG 114 (183)
T ss_pred ccccccC
Confidence 7786553
No 194
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.79 E-value=23 Score=36.18 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=86.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE-ecCCcChhHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIA 296 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~ 296 (453)
-...+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+..+ + .++. +..+. .+ ++.
T Consensus 17 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~----~~~e~i~~i~~~~~--~---~~i~~~~r~~--~~---di~ 79 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDEAGVDELEVG---IPAMGE----EERAVIRAIVALGL--P---ARLMAWCRAR--DA---DIE 79 (365)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCH----HHHHHHHHHHHcCC--C---cEEEEEcCCC--HH---HHH
Confidence 356899999999999999999999874 222221 11467777765432 2 2222 22222 22 244
Q ss_pred HHHhCCCCceeeecccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vL-k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
.+.. .+...+++.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..++.-+. --+.+.+.+.++.+.+
T Consensus 80 ~a~~--~g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 80 AAAR--CGVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDAS-RADPDFLVELAEVAAE 153 (365)
T ss_pred HHHc--CCcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCC-CCCHHHHHHHHHHHHH
Confidence 3333 3445677766 5666555 455543 2345566888999998 887775555442 3346777777788888
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
.+.+.+.+
T Consensus 154 ~Ga~~i~l 161 (365)
T TIGR02660 154 AGADRFRF 161 (365)
T ss_pred cCcCEEEE
Confidence 88876653
No 195
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=84.74 E-value=6.1 Score=37.45 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHH-HHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE-IAEV 298 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~-l~~l 298 (453)
..+.++.++-++.|.+.|+..|.+. +...+. .-.+.++.+.+..+ ......+ ..+. ....+. +..+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~----~~~~~v~~~~~~~~--~~~~~~~--~~~~--~~~i~~~~~~~ 76 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASE----DDFEQVRRLREALP--NARLQAL--CRAN--EEDIERAVEAA 76 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSH----HHHHHHHHHHHHHH--SSEEEEE--EESC--HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCH----HHHHHhhhhhhhhc--cccccee--eeeh--HHHHHHHHHhh
Confidence 4788899999999999999999875 111221 12344555544433 2111112 2221 111222 2222
Q ss_pred HhCCCCceeeecccCCCCH-HHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 299 LRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~-~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
.. .+...+.+.+ +.|+ .....+++. ...+.+.+.++.+++. |..+...++-.. .-+.+.+.+..+.+.+++
T Consensus 77 ~~--~g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 77 KE--AGIDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAG 150 (237)
T ss_dssp HH--TTSSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT
T ss_pred Hh--ccCCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcC
Confidence 22 3446677655 4455 444555542 2467788889999999 988855554443 346788899999999999
Q ss_pred CCeEEEE
Q 012929 376 FPQVHIS 382 (453)
Q Consensus 376 ~~~i~i~ 382 (453)
++.+.+-
T Consensus 151 ~~~i~l~ 157 (237)
T PF00682_consen 151 ADIIYLA 157 (237)
T ss_dssp -SEEEEE
T ss_pred CeEEEee
Confidence 9877554
No 196
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=84.74 E-value=1.8 Score=40.72 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=45.4
Q ss_pred eEEEEeeCCCcChhHHHHHHHH-----HHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccc
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~-----L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (453)
.+++.++|+.= .|.|.++.. |+..|+..+..+..||+++| |=+|+......+.++-+...+....|.+|-|.
T Consensus 33 Slw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliV-tG~VT~km~~~L~rlyeqmPePK~VIA~GaCA 109 (225)
T CHL00023 33 SLWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT-AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT 109 (225)
T ss_pred CcccccCCcch--HHHHHHHhCCCccCHHHcCCeecCCcccceEEEE-ecCCccccHHHHHHHHHhcCCCCeEEEEcccc
Confidence 44555554322 788876642 45678888999999999999 66888764444333333322222223367786
Q ss_pred cCC
Q 012929 135 PQG 137 (453)
Q Consensus 135 a~~ 137 (453)
.+.
T Consensus 110 ~sG 112 (225)
T CHL00023 110 ITG 112 (225)
T ss_pred ccC
Confidence 554
No 197
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=84.50 E-value=33 Score=33.24 Aligned_cols=143 Identities=15% Similarity=0.067 Sum_probs=86.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
...+.++.++-++.|.+.|+..|.+.. ...+.+ . .+.++.+.+..+ + ..+. .++.+. ... +...
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~---~-~~~~~~l~~~~~--~-~~~~-~l~r~~--~~~---v~~a 78 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG---D-FEAVKRIAREVL--N-AEIC-GLARAV--KKD---IDAA 78 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH---H-HHHHHHHHHhCC--C-CEEE-EEccCC--Hhh---HHHH
Confidence 467899999999999999999998853 111111 1 366677765433 2 2222 122222 122 2222
Q ss_pred HhCC--CCceeeecccCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 299 LRHP--CVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 299 ~~~~--~~~~~l~iglESgs~~vL-k~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
.... .+...+.+-+ |.|+.-+ +.+++.. ..+.+.+.++.+++. |+.+....+.+. .-+.+.+.+.++.+.+
T Consensus 79 ~~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (268)
T cd07940 79 AEALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIE 154 (268)
T ss_pred HHhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHH
Confidence 2222 1245566655 5666654 5566532 457788899999998 887775444443 2467778888888888
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
++++.+.+
T Consensus 155 ~G~~~i~l 162 (268)
T cd07940 155 AGATTINI 162 (268)
T ss_pred cCCCEEEE
Confidence 88876654
No 198
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=84.13 E-value=2.3 Score=36.72 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=39.8
Q ss_pred EEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE--EEccccC
Q 012929 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV--VAGCVPQ 136 (453)
Q Consensus 62 ~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV--vgGc~a~ 136 (453)
-|+-+.|--.+||. ++.|..++.++..||++++ |-.||.+..+.+..+-++. +.+|+| +|-|.-+
T Consensus 23 dIEi~a~~sP~YDa-------ErfgI~~v~sPRhADiLlV-TG~vT~~~~e~lkk~Yea~--PePKiViA~GaCa~~ 89 (148)
T COG3260 23 DIEILAALSPRYDA-------ERFGIKVVNSPRHADILLV-TGAVTRQMREPLKKAYEAM--PEPKIVIAVGACALS 89 (148)
T ss_pred eEEEeeccCcccch-------HHheeEEeCCCccccEEEE-eccccHHHHHHHHHHHHhC--CCCcEEEEEcccccC
Confidence 34444555566774 4679999999999999999 6677765333333222222 334544 5667544
No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=83.82 E-value=34 Score=34.96 Aligned_cols=144 Identities=14% Similarity=0.028 Sum_probs=91.1
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-...+.++.++-++.|.+.|+..|.+.. ...+. .-.+.++.+.+.. ....+. .+..+. .+. +..
T Consensus 16 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~---~~~~v~-~~~r~~--~~d---i~~ 79 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDELGVDVIEAGF---PIASE----GEFEAIKKISQEG---LNAEIC-SLARAL--KKD---IDK 79 (363)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHhcC---CCcEEE-EEcccC--HHH---HHH
Confidence 3567999999999999999999998742 22221 2246666666532 112221 122221 222 343
Q ss_pred HHhCCCCceeeecccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vL-k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+... +...+++-+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+...+.-+. --+.+.+.+.++.+.++
T Consensus 80 a~~~--g~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDC--GVDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHc--CcCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 3332 345666655 4455444 455653 2467788899999999 998888877664 35688888888888899
Q ss_pred CCCeEEEEe
Q 012929 375 KFPQVHISQ 383 (453)
Q Consensus 375 ~~~~i~i~~ 383 (453)
+.+.+.+.-
T Consensus 154 g~~~i~l~D 162 (363)
T TIGR02090 154 GADRINIAD 162 (363)
T ss_pred CCCEEEEeC
Confidence 988766543
No 200
>PRK00915 2-isopropylmalate synthase; Validated
Probab=82.25 E-value=35 Score=36.64 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=83.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
..+.+.++-++-++.|.+.|++.|.+... ..+.+ + .+.++++.+..+ + ..+.. +.... .+.++...+
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~---d-~~~v~~i~~~~~--~-~~i~a-~~r~~--~~did~a~~ 86 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGFP---ASSPG---D-FEAVKRIARTVK--N-STVCG-LARAV--KKDIDAAAE 86 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCC---CCChH---H-HHHHHHHHhhCC--C-CEEEE-EccCC--HHHHHHHHH
Confidence 35789999999999999999999987421 11111 1 345566655432 2 22221 12221 222222222
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
... ..+...+++-+-+.+-.+...+++. ...+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.+
T Consensus 87 a~~-~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~G 162 (513)
T PRK00915 87 ALK-PAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDAG 162 (513)
T ss_pred Hhh-cCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHcC
Confidence 221 2334567776644333444555553 2345567888999998 8877655554432 23566777777788888
Q ss_pred CCeEEE
Q 012929 376 FPQVHI 381 (453)
Q Consensus 376 ~~~i~i 381 (453)
.+.+.+
T Consensus 163 a~~i~l 168 (513)
T PRK00915 163 ATTINI 168 (513)
T ss_pred CCEEEE
Confidence 776654
No 201
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=81.87 E-value=2 Score=37.91 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchh-hhcCCccEEEcC
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGV 152 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e-~~~~~~d~vvG~ 152 (453)
.+||+++|+..|+.+.+ +.++++..+ +++.+++-|+.++..|+ +.....+.+-|.
T Consensus 61 ~~aD~viiTGsTlvN~T---i~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGT---IDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGS 116 (147)
T ss_dssp GG-SEEEEECHHCCTTT---HHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEE
T ss_pred ccCCEEEEEeeeeecCC---HHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEE
Confidence 35899999999998875 444556554 56789999999999997 445555555554
No 202
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=81.86 E-value=53 Score=31.95 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=88.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCC-CCCCCc--CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~-~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
...+.++.++-++.|.+.|+..|.+.-.... .+.... -.+ .+.++++.+... ....+.. +..+...... .+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~~--~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK--GNTKIAV-MVDYGNDDID--LL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc--cCCEEEE-EECCCCCCHH--HH
Confidence 4678899999999998999999887521111 111000 011 456666655321 1223322 3455432221 23
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
..... .+...+++.+ +....+...+.++.+++. |+.+...++..+ +-+.+.+.+.++.+.+.+
T Consensus 89 ~~a~~--~gv~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 89 EPASG--SVVDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIK 151 (266)
T ss_pred HHHhc--CCcCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCC
Confidence 32222 3446666655 223688999999999999 999998888887 568899999999999999
Q ss_pred CCeEEE
Q 012929 376 FPQVHI 381 (453)
Q Consensus 376 ~~~i~i 381 (453)
.+.+.+
T Consensus 152 ~~~i~l 157 (266)
T cd07944 152 PDVFYI 157 (266)
T ss_pred CCEEEE
Confidence 887654
No 203
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=80.88 E-value=3.1 Score=38.09 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=32.0
Q ss_pred HHHcCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCC
Q 012929 82 LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (453)
Q Consensus 82 L~~~g~~-~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (453)
++..|.. .+..+..||+++| |=+||.+..+.+.++-+...+....|.+|-|..+.
T Consensus 59 ~eRfGi~~~~~sPR~ADvllV-tG~VT~~m~~~l~~~yeqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 59 IARFGAERPSFSPRQADMILV-LGTITYKMAPVLRQIYDQMAEPKFVISVGACASSG 114 (186)
T ss_pred HHHhCccccCCCcccceEEEE-eccCchhhHHHHHHHHHhcCCCCeEEEeccccccC
Confidence 3455664 4678899999999 66888764333333333322222224477786654
No 204
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=80.29 E-value=16 Score=35.62 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
-...++.+.++++++.+++.|..-|-+-++ .-+.+....+..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 18 ~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~---~~~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~~v~eaaL---- 86 (261)
T PRK07535 18 AIEAKDAAFIQKLALKQAEAGADYLDVNAG---TAVEEEPETMEWLVETVQEVV----DVPLCIDSPNPAAIEAGL---- 86 (261)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCC---CCchhHHHHHHHHHHHHHHhC----CCCEEEeCCCHHHHHHHH----
Confidence 357789999999999999999987766443 222221234566666665432 244666665554222111
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcC-------------CC--C----HHHHHHHHHHHHHhCCCc---EEEEEEEE
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNR-------------EY--T----LSDFRTVVDTLIELVPGM---QIATDIIC 354 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R-------------~~--t----~e~~~~~i~~lr~~~pgi---~v~~~~Iv 354 (453)
+......+.+.++..-+ -.++++..+.+ +. + .+.+.+.++.+.++ |+ .+..|=.+
T Consensus 87 ~~~~G~~iINsIs~~~~-~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi 163 (261)
T PRK07535 87 KVAKGPPLINSVSAEGE-KLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLV 163 (261)
T ss_pred HhCCCCCEEEeCCCCCc-cCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCC
Confidence 11011123333332111 13444432211 11 1 35567778888888 88 78899999
Q ss_pred eCCCCCHHHHHHHHHHHHhc
Q 012929 355 GFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 355 G~PgET~ed~~~tl~~i~~l 374 (453)
|+.+-+.+...++++.++.+
T Consensus 164 ~~~~~~~~~~~~~l~~i~~l 183 (261)
T PRK07535 164 LPLSAAQDAGPEVLETIRRI 183 (261)
T ss_pred CcccCChHHHHHHHHHHHHH
Confidence 97777777665555555544
No 205
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=79.82 E-value=53 Score=32.23 Aligned_cols=147 Identities=10% Similarity=0.111 Sum_probs=88.1
Q ss_pred cccCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-CceEEEEecCCcChhHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~-~~~ir~~~~~p~~i~~~l~~l 295 (453)
-...|.++-++-++.|.+. |+++|.+.. +..+.+ -.+.++++.+.-...+ ...+++...-+. .. .+
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~---~~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DK---SV 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HH---HH
Confidence 4577899999999987554 999998753 222221 1245555543110000 011233222222 12 23
Q ss_pred HHHHhCCCCceeeecccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCC-CCCHHHHHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNL 370 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vL-k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~P-gET~ed~~~tl~~ 370 (453)
..... .+...+++.+ |.|+.-. +.+|+. ...+++.+.++.+++. |+.+..++.- |-| .-+.+.+.+.++.
T Consensus 81 ~~A~~--~g~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 81 DWIKS--AGAKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHH--CCCCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 33333 3557788888 5555544 566653 3567788889999998 9888887774 223 3467888888888
Q ss_pred HHhcCCCeEEE
Q 012929 371 IKEYKFPQVHI 381 (453)
Q Consensus 371 i~~l~~~~i~i 381 (453)
+.+++.+.+.+
T Consensus 156 ~~~~G~~~i~l 166 (280)
T cd07945 156 LSDLPIKRIML 166 (280)
T ss_pred HHHcCCCEEEe
Confidence 88999887654
No 206
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=78.56 E-value=3.9 Score=48.08 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=54.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.||-+-|..=-...---..+.-.|+.+||++++. ...||+|.+ |+..+.. ...+.+.++.+++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgL-S~Lmt~t-~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGL-SGLITPS-LDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCccccc-HHHHHHHHHHHHhc
Confidence 4665555544444444566778899999999875 468999999 6666654 45688889988887
Q ss_pred C--CCEEEEccccC
Q 012929 125 K--KPLVVAGCVPQ 136 (453)
Q Consensus 125 ~--~~vVvgGc~a~ 136 (453)
| .+|+|||-..+
T Consensus 811 g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 811 GITIPLLIGGAATS 824 (1178)
T ss_pred CCCceEEEeccccc
Confidence 6 57999996543
No 207
>PRK09389 (R)-citramalate synthase; Provisional
Probab=78.34 E-value=63 Score=34.47 Aligned_cols=142 Identities=14% Similarity=0.051 Sum_probs=88.3
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-.+.+.++.++-++.|.+.|++.|.... ...+.+ =.+.++.+.+.- ....+. .+... ..+. +..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~~---~~~~i~-a~~r~--~~~d---i~~ 81 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDEG---LNAEIC-SFARA--VKVD---IDA 81 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhcC---CCcEEE-eeccc--CHHH---HHH
Confidence 4678999999999999999999998753 222211 145667776431 112221 12222 1222 333
Q ss_pred HHhCCCCceeeecccCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vL-k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+.. .+.+.+++.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+-+.+.++.+.+.
T Consensus 82 a~~--~g~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALE--CDVDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHh--CCcCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 333 3456788877 5555544 444442 2446677777888888 888888877654 34567777888888888
Q ss_pred CCCeEEE
Q 012929 375 KFPQVHI 381 (453)
Q Consensus 375 ~~~~i~i 381 (453)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 8887654
No 208
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=76.90 E-value=7.8 Score=35.37 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=39.2
Q ss_pred eeCCCcChhHHHHHHHHH-----HHcCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccC
Q 012929 65 TFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQ 136 (453)
Q Consensus 65 t~GC~~N~~dse~~~~~L-----~~~g~~-~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVvgGc~a~ 136 (453)
+.|| .|.|.++... ...|.. .+..+..||+++| |=+|+...... .+.+.+.. ..++ |.+|.|...
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillV-eG~VT~~m~~~-l~~~~e~~-p~pk~VIAvGaCA~~ 113 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMV-MGTIAKKMAPV-LKQVYLQM-AEPRWVVAVGACASS 113 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEE-EecCCcccHHH-HHHHHHhc-CCCCeEEEEeccccc
Confidence 4467 8989877543 344653 4567899999999 55777654322 22222221 2333 447888665
Q ss_pred C
Q 012929 137 G 137 (453)
Q Consensus 137 ~ 137 (453)
.
T Consensus 114 G 114 (180)
T PRK14820 114 G 114 (180)
T ss_pred C
Confidence 4
No 209
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=75.98 E-value=93 Score=31.43 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecC-----CCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSED-----TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d-----~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~ 293 (453)
...+.+++++-++.|.+.|+..|.+.-.+ ...||... ..-.+.++.+.+..+ + ..+.. ++.|..-+. +
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~--~-~~~~~-ll~pg~~~~--~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVK--Q-AKIAA-LLLPGIGTV--D 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCC--C-CEEEE-EeccCcccH--H
Confidence 45688999999999999999999875211 12223221 123567777765443 2 23322 234432121 2
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
++..... .+...+.+.. +.++ .+...+.++.+++. |..+...++... .-+++.+.+.++.+.+
T Consensus 93 dl~~a~~--~gvd~iri~~-~~~e-----------~~~~~~~i~~ak~~--G~~v~~~l~~a~-~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYD--AGVRVVRVAT-HCTE-----------ADVSEQHIGLAREL--GMDTVGFLMMSH-MAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHH--cCCCEEEEEE-ecch-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHHh
Confidence 2443333 2445666654 2222 34678999999999 999999888874 5688999999999999
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
++.+.+.+
T Consensus 156 ~Ga~~i~i 163 (337)
T PRK08195 156 YGAQCVYV 163 (337)
T ss_pred CCCCEEEe
Confidence 99887654
No 210
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.94 E-value=6.7 Score=38.00 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=77.1
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-----~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
.+..+++.+++.++.+.+.|..-|-+-++.+....... ..++..+++.+.+.. ...+.+.+.+|..+..
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~a-- 91 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAEA-- 91 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHHH--
Confidence 45678999999999999999998877554332211100 024555666665421 2446666655542221
Q ss_pred HHHHHHHhC-CCCceeeecccCCCCHHHHHhhcC-----------C----------C--C----HHHHHHHHHHHHHhCC
Q 012929 293 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-----------E----------Y--T----LSDFRTVVDTLIELVP 344 (453)
Q Consensus 293 ~~l~~l~~~-~~~~~~l~iglESgs~~vLk~m~R-----------~----------~--t----~e~~~~~i~~lr~~~p 344 (453)
.++. ..+.+. +.-+..++++++.+.+ + | . .+.+.+.++.+.++
T Consensus 92 -----aL~~g~~iINd--is~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 162 (258)
T cd00423 92 -----ALKAGADIIND--VSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA-- 162 (258)
T ss_pred -----HHHhCCCEEEe--CCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--
Confidence 1111 112222 2222223444432211 0 0 1 46677788888888
Q ss_pred Cc---EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 345 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 345 gi---~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
|+ .+..|-.+||.. +.++...+++.+..+
T Consensus 163 Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 163 GIPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 85 578899999887 555444455555443
No 211
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=75.73 E-value=47 Score=32.80 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-cC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhH---HH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d-~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~---~l 292 (453)
+-++..++.+.++.+.+.|+++|.++..|.. .|.. .+ ..-.+|++-+..... +...+... .+|..-.+ ..
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~ 162 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPP-AGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVK 162 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCC-CCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhH
Confidence 4558899999999999999999998877774 2211 11 345677777764322 22444443 56654322 11
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~ 356 (453)
.++..+.+. +++|-+.++.++ -++.+.+.+..++++++ |+ ..-|+.|+
T Consensus 163 ~d~~~lkrK----------v~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 163 EDIKRLKRK----------VDAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHHHH----------HhcchHHHHHHH--ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 223333321 446677777665 36889999999999998 64 33445544
No 212
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=74.74 E-value=87 Score=30.50 Aligned_cols=148 Identities=16% Similarity=0.056 Sum_probs=84.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChh-HHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 297 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~-~~l~~l~~ 297 (453)
...+.++.++-++.|.+.|++.|.+... ..+ ..-.+.++.+.+.-. .+....-+....+..+. +....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP---GSN----PKDTEFFARAKKLKL-KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC---cCC----HHHHHHHHHHHHcCC-CCcEEEEEecccccCCCccchHHHHH
Confidence 5678999999999999999999988331 111 122444555544210 01111111111111111 11112333
Q ss_pred HHhCCCCceeeecccCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CC--CCHHHHHHHHHHH
Q 012929 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGF-PG--ETDEDFNQTVNLI 371 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~-vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-Pg--ET~ed~~~tl~~i 371 (453)
+.. .+...+++.+ |.|+. ..+.+++. ...+.+.+.++.+++. |+.+..+.+ .| .+ .+.+.+.+.++.+
T Consensus 87 a~~--~g~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~-~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 87 LLE--AGTPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAE-HFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHh--CCCCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEE-eccccCCCCHHHHHHHHHHH
Confidence 333 3556677654 44544 44666664 4667888899999999 988877633 33 22 3566667777777
Q ss_pred HhcCCCeEE
Q 012929 372 KEYKFPQVH 380 (453)
Q Consensus 372 ~~l~~~~i~ 380 (453)
.+++.+.+.
T Consensus 161 ~~~g~~~i~ 169 (273)
T cd07941 161 AEAGADWLV 169 (273)
T ss_pred HhCCCCEEE
Confidence 888887654
No 213
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=74.39 E-value=89 Score=30.48 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=86.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCC-CceEEE----Ee-cCCcChhH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDG-STMLRI----GM-TNPPFILE 290 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~--yg~d~~~~l~~Ll~~l~~~i~~~~-~~~ir~----~~-~~p~~i~~ 290 (453)
...+.++.++-+..|.+.|+..|.+...-.+. ++. ...+-.+.++.+.+..+... ..|.|- ++ ..|..+.+
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHH
Confidence 35688888888999999999999876421100 100 01223566677765443101 112221 10 13333343
Q ss_pred HHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCCHHHHHHHHH
Q 012929 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVN 369 (453)
Q Consensus 291 ~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET~ed~~~tl~ 369 (453)
.. +..... .+...+++.. +.|+ .+...+.++.+++. |..+...+.+-+ +.-+++.+.+.++
T Consensus 95 ~d--i~~~~~--~g~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~ 156 (275)
T cd07937 95 LF--VEKAAK--NGIDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAK 156 (275)
T ss_pred HH--HHHHHH--cCCCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHH
Confidence 32 333333 2335566644 2233 57889999999999 988777665422 5567888899999
Q ss_pred HHHhcCCCeEEEE
Q 012929 370 LIKEYKFPQVHIS 382 (453)
Q Consensus 370 ~i~~l~~~~i~i~ 382 (453)
.+.+++.+.+.+-
T Consensus 157 ~~~~~Ga~~i~l~ 169 (275)
T cd07937 157 ELEDMGADSICIK 169 (275)
T ss_pred HHHHcCCCEEEEc
Confidence 9999998877653
No 214
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=73.55 E-value=6.3 Score=46.45 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.||-+-|..=-.-----..+.-.|+.+||++++. ...||+|++ |+..+.. ...+.+.++.+++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgL-S~L~t~s-~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGL-SGLITPS-LDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcchhh-HHHHHHHHHHHHhc
Confidence 4665555544444444566778899999999875 468999999 6666654 45688888888887
Q ss_pred C--CCEEEEccccC
Q 012929 125 K--KPLVVAGCVPQ 136 (453)
Q Consensus 125 ~--~~vVvgGc~a~ 136 (453)
+ .+|++||-..+
T Consensus 830 g~~v~v~vGGa~~s 843 (1229)
T PRK09490 830 GFTIPLLIGGATTS 843 (1229)
T ss_pred CCCCeEEEEeeccc
Confidence 6 57999996544
No 215
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.42 E-value=6.7 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=21.0
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~ 92 (453)
.+++.+.| |.-..=++.++..|+++||++++.
T Consensus 118 a~ri~vlT---PY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 118 AQRISVLT---PYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred cceEEEec---cchhhhhhHHHHHHHhCCeEEEEe
Confidence 46777665 222333455667789999999864
No 216
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=72.57 E-value=89 Score=33.39 Aligned_cols=146 Identities=12% Similarity=-0.034 Sum_probs=80.3
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE-EEecCCcChhHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEHLKEIA 296 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir-~~~~~p~~i~~~l~~l~ 296 (453)
-.+.+.++-++-++.|.+.|++.|.... ...+. .+ .+.++++.+..+ + ..+. +...+...+. ...
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s~---~d-~e~v~~i~~~~~--~-~~i~al~r~~~~did----~a~ 82 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAGF---PVSSP---GD-FEAVQRIARTVK--N-PRVCGLARCVEKDID----AAA 82 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEEC---CCCCH---HH-HHHHHHHHHhCC--C-CEEEEEcCCCHHhHH----HHH
Confidence 4578999999999999999999998632 22211 12 345566655432 2 2222 2111222222 111
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+... +.....+++-+=+.+-.+...+++. ...+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.
T Consensus 83 ~al~-~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r-~d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 83 EALK-PAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGR-TEIPFLARIVEAAINA 158 (494)
T ss_pred Hhcc-ccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCC-CCHHHHHHHHHHHHHc
Confidence 1111 1223566665544344444555542 2345566788888888 7765544444432 2356666777777777
Q ss_pred CCCeEEE
Q 012929 375 KFPQVHI 381 (453)
Q Consensus 375 ~~~~i~i 381 (453)
+.+.+.+
T Consensus 159 Ga~~i~l 165 (494)
T TIGR00973 159 GATTINI 165 (494)
T ss_pred CCCEEEe
Confidence 8776554
No 217
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=71.81 E-value=66 Score=31.88 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
|.++..++...+..+.+.|+++|..+..|...-+......-.+|++-+.
T Consensus 92 r~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~ 140 (296)
T PRK09432 92 IDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLK 140 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHH
Confidence 4558889999999999999999988876754432221122346666554
No 218
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=71.43 E-value=25 Score=28.20 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=36.4
Q ss_pred ceEEEEee-CCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc-ch--HHHHHHHHHH-HhhCCCCEEEEc
Q 012929 59 ETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PS--QSAMDTLIAK-CKSAKKPLVVAG 132 (453)
Q Consensus 59 ~~~~i~t~-GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~-~a--~~~~~~~i~~-~~~~~~~vVvgG 132 (453)
+-++|.|- ||+=-.+=-.. .+|. ++ +.||.|-+.||++.. +. -..+.++.++ ..+.+.+||+|-
T Consensus 29 ~viaf~tCGgCpGrlvpn~~--k~lk--~~------egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gT 97 (101)
T COG5561 29 RVIAFITCGGCPGRLVPNQI--KQLK--GK------EGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGT 97 (101)
T ss_pred EEEEEEEcCCCCcchhHHHH--HHHh--hc------cccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeec
Confidence 56788888 99874443222 2222 22 238999999999887 21 0111222232 234578888863
No 219
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=70.59 E-value=1e+02 Score=29.41 Aligned_cols=136 Identities=7% Similarity=0.093 Sum_probs=79.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l--~~~d~~~yg~d~~~~l-~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
-+.+.-.+-+|++.+.+.|+..+.+ .|.+ |-... .| +..++.+.+.+ ...+.+...+|... +
T Consensus 20 l~ad~~~l~~el~~l~~~g~d~lHiDVMDG~---FVPNi--tfGp~~i~~i~~~~----~~DvHLMv~~P~~~------i 84 (228)
T PRK08091 20 LASNWLKFNETLTTLSENQLRLLHFDIADGQ---FSPFF--TVGAIAIKQFPTHC----FKDVHLMVRDQFEV------A 84 (228)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCC---cCCcc--ccCHHHHHHhCCCC----CEEEEeccCCHHHH------H
Confidence 4556678899999999999877654 3332 22211 11 45566653221 13445544455422 2
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
..+.+ .++..+.+-+|+. .+..+.++.+|+. |+.+.+.+.+. |+-..+.++..++.
T Consensus 85 ~~~~~--aGad~It~H~Ea~--------------~~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~~----- 140 (228)
T PRK08091 85 KACVA--AGADIVTLQVEQT--------------HDLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLDQ----- 140 (228)
T ss_pred HHHHH--hCCCEEEEcccCc--------------ccHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHhh-----
Confidence 23333 3456777778864 2356788999999 88666677776 67677776555442
Q ss_pred CCeEEEEecccCCCCHhH
Q 012929 376 FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 376 ~~~i~i~~~sp~pGT~~~ 393 (453)
+|.+-+..-.|--|-..+
T Consensus 141 vD~VLiMtV~PGfgGQ~f 158 (228)
T PRK08091 141 IDLIQILTLDPRTGTKAP 158 (228)
T ss_pred cCEEEEEEECCCCCCccc
Confidence 566665555554334444
No 220
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=70.59 E-value=7.5 Score=43.74 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=46.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHH-----HHHcCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~-----L~~~g~~-~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVv 130 (453)
..+++.++||. =.|.|.++.. ++..|++ .+..+..||+++| |-+|+.+....+.++-++. +.+| |.+
T Consensus 22 ~s~w~~~~~~~--cc~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv-~G~vt~~~~~~l~~~~~~~--p~pk~via~ 96 (788)
T PRK13292 22 NSLWPMFFGLS--CCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVI-AGTVFKKMAPSILRLYEQM--AEPKWVISM 96 (788)
T ss_pred CCCcceecCCc--cHHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEE-ecCCcHhhHHHHHHHHHhC--CCCCEEEEe
Confidence 34566666652 2788876543 4567876 4788999999999 6688765444443333332 2344 447
Q ss_pred EccccCCc
Q 012929 131 AGCVPQGS 138 (453)
Q Consensus 131 gGc~a~~~ 138 (453)
|.|..+.-
T Consensus 97 G~Ca~~GG 104 (788)
T PRK13292 97 GSCANSGG 104 (788)
T ss_pred cccccCCC
Confidence 88977643
No 221
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=70.12 E-value=33 Score=29.61 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
.+.+.+.+.++.++++ |+.- .-+|+|= +.-..+++.+..+.+++++++.++ -|||+.
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4668889999999998 7632 4466665 345778888888999999998664 366654
No 222
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=68.27 E-value=9 Score=34.96 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=41.5
Q ss_pred eEEEEeeCCCcChhHHHHHHHH-----HHHcCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEE
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVA 131 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~-----L~~~g~~~~-~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVvg 131 (453)
.++..+||..= .|.|.++.. ++..|+..+ ..+..||+++| |=+|+.+... +.+.+.+.. ..+| |.+|
T Consensus 36 Slw~~~~~~~C--C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillV-eG~VT~~m~~-~l~~~~e~~-p~pK~VIAvG 110 (181)
T PRK14817 36 SLFTYPFVTAC--CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMV-VGTVNCKQAP-ILQRVYEQM-ADPKWVMAFG 110 (181)
T ss_pred Cccccccccch--HHHHHHHhcCccccHHHhceeeccCCCcceeEEEE-EecCCccchH-HHHHHHHHc-ccCCEEEEec
Confidence 34444444321 788876542 344566554 78999999999 6677765332 333333333 2333 3367
Q ss_pred ccccCC
Q 012929 132 GCVPQG 137 (453)
Q Consensus 132 Gc~a~~ 137 (453)
-|..+.
T Consensus 111 aCA~~G 116 (181)
T PRK14817 111 VCASSG 116 (181)
T ss_pred cccccC
Confidence 786543
No 223
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=67.88 E-value=1.1e+02 Score=29.68 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeec
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSE 246 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~ 246 (453)
+..+.+++++.+.++.+.|..-|-+-+.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~ 46 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGE 46 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4568999999999999999998877543
No 224
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=67.60 E-value=1.8e+02 Score=31.28 Aligned_cols=150 Identities=16% Similarity=0.021 Sum_probs=83.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCCceEEEEecCCcChhH-HHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILE-HLKEI 295 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~-i~~~~~~~ir~~~~~p~~i~~-~l~~l 295 (453)
-.+.+.++.++-++.|.+.|++.|..... ..+. .-.+.++++.+. +. +.....+.......+.. ....+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p---~as~----~d~~~~~~i~~~~l~--~~~i~~~~~~~~~~i~~~~d~~~ 91 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGWP---GSNP----KDTEFFKRAKELKLK--HAKLAAFGSTRRAGVSAEEDPNL 91 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCC---cCCh----hHHHHHHHHHHhCCC--CcEEEEEeeccccCCCcccHHHH
Confidence 36789999999999999999999987321 1111 114456666542 11 11222222222222211 00113
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCC--CCCHHHHHHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLI 371 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~P--gET~ed~~~tl~~i 371 (453)
..+.. .+...+|+-+-+.+-.+.+.+|+. ...+.+.+.++.+++. |..+..+.+.-+. -.+.+-+.+.++.+
T Consensus 92 e~~~~--~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLD--AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHh--CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 33333 344677776644333344566543 3567778888999998 8776543331111 13345556667777
Q ss_pred HhcCCCeEE
Q 012929 372 KEYKFPQVH 380 (453)
Q Consensus 372 ~~l~~~~i~ 380 (453)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 788888766
No 225
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=66.08 E-value=1.3e+02 Score=29.00 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=86.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~-----d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~ 293 (453)
...+.++.++-++.+.+.|+..|.+... ..+.++.. ...-.+.++.+.+..+ + ..+... +.+..... +
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~--~-~~~~~~-~~~~~~~~--~ 89 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALK--Q-AKLGVL-LLPGIGTV--D 89 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhcc--C-CEEEEE-ecCCccCH--H
Confidence 4668899999999999999999887621 11111111 1223567777765443 2 233222 22221111 2
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
++..... .++..+.+.+ +.|+ .....+.++.+++. |..+...++.... -+++.+.+.++.+.+
T Consensus 90 ~i~~a~~--~g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (263)
T cd07943 90 DLKMAAD--LGVDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSHM-ASPEELAEQAKLMES 152 (263)
T ss_pred HHHHHHH--cCCCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEeccC-CCHHHHHHHHHHHHH
Confidence 2443333 3446666644 3333 23678899999999 9999988877763 578888899999999
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
.+.+.+.+
T Consensus 153 ~G~d~i~l 160 (263)
T cd07943 153 YGADCVYV 160 (263)
T ss_pred cCCCEEEE
Confidence 99887654
No 226
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=65.69 E-value=9.8 Score=35.88 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 72 QSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
..--..+...|+.+||++++- ...||+|..+ -+.|+. -..+.+++.++++.|.
T Consensus 118 dIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~S-alMTtt-m~~~~~viE~L~eeGi 184 (227)
T COG5012 118 DIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMS-ALMTTT-MIGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEech-HHHHHH-HHHHHHHHHHHHHcCC
Confidence 334467888999999999875 4569999884 344443 3347788888888874
No 227
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=65.40 E-value=41 Score=36.94 Aligned_cols=101 Identities=11% Similarity=0.137 Sum_probs=65.0
Q ss_pred CceEEEEeeCCCcC-hhHHHHHHHHHHHcCCeeeCCC--------------CCCcEEEEeecccccchHHHHHHHHHHHh
Q 012929 58 TETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINTCTVKSPSQSAMDTLIAKCK 122 (453)
Q Consensus 58 ~~~~~i~t~GC~~N-~~dse~~~~~L~~~g~~~~~~~--------------~~AD~viinTCtv~~~a~~~~~~~i~~~~ 122 (453)
.++|++.|+|=-.- ..=+.--.+.|...||++++.. ..||+++| |+--....+.+-.+++.+|
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHHH
Confidence 46899999996432 3334455566777889987653 56899999 8876655566777788888
Q ss_pred hCCC-CEEEEccccCCchhhhcCCccE--EEcCCChhHHHHH
Q 012929 123 SAKK-PLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEV 161 (453)
Q Consensus 123 ~~~~-~vVvgGc~a~~~~e~~~~~~d~--vvG~~~~~~l~~~ 161 (453)
..|. +|++.|--+. ..++.....|. .+|..-...|..+
T Consensus 572 ~ag~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~ 612 (619)
T TIGR00642 572 AAGAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSST 612 (619)
T ss_pred hCCCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHH
Confidence 8775 6888887654 22233333454 4455444433333
No 228
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=65.26 E-value=27 Score=33.47 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=54.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCC-----CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS-----EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~-----~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgG 132 (453)
.+||++.| |....=++.+...|++.||+++... ++.++.-+ ..+.+++.++++...+.-.|+--
T Consensus 120 ~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i--------~p~~i~~~~~~~~~~~aDAifis 188 (239)
T TIGR02990 120 VRRISLLT---PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARI--------SPDCIVEAALAAFDPDADALFLS 188 (239)
T ss_pred CCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeec--------CHHHHHHHHHHhcCCCCCEEEEe
Confidence 36888877 5788888999999999999987641 11221111 23456666766655566555445
Q ss_pred cccCCchh-hhcCC---ccEEEcCCChhHHHHHHH
Q 012929 133 CVPQGSRD-LKELE---GVSIVGVQQIDRVVEVVE 163 (453)
Q Consensus 133 c~a~~~~e-~~~~~---~d~vvG~~~~~~l~~~l~ 163 (453)
|-.-.--+ +..++ +.-|+...+ ..++..++
T Consensus 189 CTnLrt~~vi~~lE~~lGkPVlsSNq-at~W~~Lr 222 (239)
T TIGR02990 189 CTALRAATCAQRIEQAIGKPVVTSNQ-ATAWRCLR 222 (239)
T ss_pred CCCchhHHHHHHHHHHHCCCEEEHHH-HHHHHHHH
Confidence 76543332 22332 223554434 35666664
No 229
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=64.93 E-value=1.3e+02 Score=29.47 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCC---C---HHHHHHHHHHhCCCCCCceEEEEe-----cCCcCh
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV---N---LPILLNAIVAELPPDGSTMLRIGM-----TNPPFI 288 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~---~---l~~Ll~~l~~~i~~~~~~~ir~~~-----~~p~~i 288 (453)
++.+.-++..+..|.+.|+...+.. +++.||.+.++ . ..+.+++|.+.+ |..++-+-| .+...+
T Consensus 55 TKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~i---G~~rViWRYDPIil~~~~~~ 129 (266)
T PF08902_consen 55 TKNPAPFLPYLDELDERGYPYYFQF--TITGYGKDLEPNVPPKDERIETFRELSERI---GPERVIWRYDPIILTDKYTV 129 (266)
T ss_pred cCCcHHHHhhHHHHHhCCCceEEEE--EeCCCCccccCCCCCHHHHHHHHHHHHHHH---CCCcEEEecCCEeECCCCCH
Confidence 5566667888888988898866554 46789988653 2 334445555555 323332221 222233
Q ss_pred hHHHHHHHHHHhC-CCCceeeecccCCCCHHHHHhhc
Q 012929 289 LEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMN 324 (453)
Q Consensus 289 ~~~l~~l~~l~~~-~~~~~~l~iglESgs~~vLk~m~ 324 (453)
.-+++.+..|++. .+....+.+++=..-.++-+.|.
T Consensus 130 ~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l~ 166 (266)
T PF08902_consen 130 DYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNLA 166 (266)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHHH
Confidence 3444444444422 23345555555444444444443
No 230
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=9.7 Score=35.58 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=38.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhh-hcCCccEEEcCCCh
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGVQQI 155 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~-~~~~~d~vvG~~~~ 155 (453)
.+.|+++++..|.-+.+-+ .++.++ +..+-||+.|+.+|..||. .....+++.|..=.
T Consensus 163 P~~Dvii~SaStlvN~T~d---~~Ld~a-k~ak~vvl~GPTa~l~pe~f~~~gvt~iag~kIi 221 (250)
T COG2014 163 PEVDVIIASASTLVNGTLD---MILDRA-KKAKLVVLTGPTAQLLPEFFKGTGVTHIAGTKII 221 (250)
T ss_pred ccccEEEEechhhhcCcHH---HHHhhh-ccCcEEEEeCCCcccchhHHhccCcceEEeeeec
Confidence 3579999987666665433 334433 2335688999999999984 45555677777543
No 231
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=63.81 E-value=1.4e+02 Score=28.97 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=24.1
Q ss_pred ccccCCHHHHHHHHHHHHHCCCcEEEEee
Q 012929 217 HLGSYTVESLVGRVRTVIADGVKEVWLSS 245 (453)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~ 245 (453)
..+..+++++++.++.+.+.|..-|-+-+
T Consensus 16 g~~~~~~~~~~~~a~~~~~~GA~iIDIG~ 44 (257)
T TIGR01496 16 GGRFLSVDKAVAHAERMLEEGADIIDVGG 44 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 34556889999999999999999888743
No 232
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=63.07 E-value=23 Score=37.81 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCeeeCCCCCCcEE-EEeeccccc--------------chHHHHHHHHHHHhhCCCCEEEEc
Q 012929 75 SEYMAGQLSAFGYALTDNSEEADIW-LINTCTVKS--------------PSQSAMDTLIAKCKSAKKPLVVAG 132 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~~~~~AD~v-iinTCtv~~--------------~a~~~~~~~i~~~~~~~~~vVvgG 132 (453)
.+.+...+...|..+++.+++||++ .|||..-.. ..-..+...|+.+.+.|++|.+.=
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaD 352 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIAD 352 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4567788889999999999999987 577764332 122445666777777788887643
No 233
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=62.45 E-value=2.4e+02 Score=30.89 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCCc---eEE----EEecC-CcChh
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGST---MLR----IGMTN-PPFIL 289 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~--yg~d~~~~l~~Ll~~l~~~i~~~~~~---~ir----~~~~~-p~~i~ 289 (453)
..+.++.+.-+..+.+.|+..|.+.|.-++. +.. ...+-.+.|+.+.+.++ ... .+| +++.+ |+++.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~-~~e~p~e~lr~l~~~~~--~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRF-LGEDPWERLRELKKAMP--NTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccc-cCCCHHHHHHHHHHhCC--CCeEEEEecCcceeccccCcHHHH
Confidence 4567777777777878899999887542222 110 11233677777777654 211 122 33332 44333
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCCCCCHHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTV 368 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~PgET~ed~~~tl 368 (453)
+.. +..... .+...+++.. +.|+ .+.+...++.++++ |..+...+-+ +-|-.|.+.+.+.+
T Consensus 100 ~~~--v~~a~~--~Gid~~rifd-~lnd-----------~~~~~~ai~~ak~~--G~~~~~~i~yt~~p~~~~~~~~~~a 161 (593)
T PRK14040 100 ERF--VERAVK--NGMDVFRVFD-AMND-----------PRNLETALKAVRKV--GAHAQGTLSYTTSPVHTLQTWVDLA 161 (593)
T ss_pred HHH--HHHHHh--cCCCEEEEee-eCCc-----------HHHHHHHHHHHHHc--CCeEEEEEEEeeCCccCHHHHHHHH
Confidence 322 332233 3345566552 3333 25678888888888 8765444322 35777888888888
Q ss_pred HHHHhcCCCeEEE
Q 012929 369 NLIKEYKFPQVHI 381 (453)
Q Consensus 369 ~~i~~l~~~~i~i 381 (453)
+.+.+++.+.+.+
T Consensus 162 ~~l~~~Gad~i~i 174 (593)
T PRK14040 162 KQLEDMGVDSLCI 174 (593)
T ss_pred HHHHHcCCCEEEE
Confidence 8888888776654
No 234
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.07 E-value=1.6e+02 Score=29.94 Aligned_cols=137 Identities=23% Similarity=0.322 Sum_probs=82.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC------------------CCCceEEE
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP------------------DGSTMLRI 280 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~------------------~~~~~ir~ 280 (453)
...+.+.-+++|.+|.+.|..-+.+.-+|.-. ++-+..|.+.++. .+...+|
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~---------a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iR- 106 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDMEA---------AAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALR- 106 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHHH---------HHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEE-
Confidence 46788999999999999999888776433211 2222222222110 0344455
Q ss_pred EecCCcCh---hHHHHHHHHHHhCCCCceeeecccCCCC--HHHHHhhcCCC---CHHHHHHHHHHHHHhCCCcEEEEEE
Q 012929 281 GMTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 281 ~~~~p~~i---~~~l~~l~~l~~~~~~~~~l~iglESgs--~~vLk~m~R~~---t~e~~~~~i~~lr~~~pgi~v~~~~ 352 (453)
+||.++ .+.+.++.+.++..+. -+-||+-||| .++|++.+.+. -++...+-++.+.+. |+ .||
T Consensus 107 --INPGNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~--~f---~~i 177 (360)
T PRK00366 107 --INPGNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEEL--GF---DDI 177 (360)
T ss_pred --ECCCCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHC--CC---CcE
Confidence 467766 3455566666665444 4668888776 66666664322 234455556666666 55 677
Q ss_pred EEeCCCCCHHHHHHHHHHHHhc
Q 012929 353 ICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l 374 (453)
++-+-.-+.-...+..+++.+.
T Consensus 178 viS~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 178 KISVKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred EEEEEcCCHHHHHHHHHHHHhc
Confidence 7777776666666666666543
No 235
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=59.24 E-value=2.4e+02 Score=29.88 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHhCCCCCCc---eEEE----Ee-cCCcChh
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGST---MLRI----GM-TNPPFIL 289 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y-g~d~~~~l~~Ll~~l~~~i~~~~~~---~ir~----~~-~~p~~i~ 289 (453)
...+.++.+.-++.+.+.|+..|.+.+...+.- .+-...+-.+.++.+.+.++ +.. +.|. ++ ..|+++.
T Consensus 20 ~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 20 TRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK--NTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC--CCEEEEEeccccccCcccccchhh
Confidence 356888888888889889999998865433210 00011234677888876543 211 1121 11 1233333
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE--EeCCCCCHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII--CGFPGETDEDFNQT 367 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I--vG~PgET~ed~~~t 367 (453)
+.. +....+ .+...+++.. +.|+ .+.+...++.+++. |..+...+- ++ |-.|.+.+.+.
T Consensus 98 ~~f--v~~A~~--~Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~-p~~t~e~~~~~ 158 (467)
T PRK14041 98 ELF--VKKVAE--YGLDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVS-PVHTLEYYLEF 158 (467)
T ss_pred HHH--HHHHHH--CCcCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccC-CCCCHHHHHHH
Confidence 322 232233 3445565544 4555 24567888999998 877665443 34 77788888888
Q ss_pred HHHHHhcCCCeEEE
Q 012929 368 VNLIKEYKFPQVHI 381 (453)
Q Consensus 368 l~~i~~l~~~~i~i 381 (453)
.+.+.+++.+.+.+
T Consensus 159 a~~l~~~Gad~I~i 172 (467)
T PRK14041 159 ARELVDMGVDSICI 172 (467)
T ss_pred HHHHHHcCCCEEEE
Confidence 88888888877655
No 236
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=58.58 E-value=32 Score=29.67 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCeee-----C-------CCCCCcEEEEeecccccc-hHHHHHHHHHHHhhCCCCEEEEcccc
Q 012929 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINTCTVKSP-SQSAMDTLIAKCKSAKKPLVVAGCVP 135 (453)
Q Consensus 75 se~~~~~L~~~g~~~~-----~-------~~~~AD~viinTCtv~~~-a~~~~~~~i~~~~~~~~~vVvgGc~a 135 (453)
.+.|+..|...|+++. . +..++|+++|-|.|.... ....+...++.+..+++++.+=|++-
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd 91 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGE 91 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCC
Confidence 3456666666787653 1 223578899977665322 23356777777766677776666653
No 237
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=58.57 E-value=1.1e+02 Score=29.16 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=76.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCce---------------EE---
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM---------------LR--- 279 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~---------------ir--- 279 (453)
.-+.+.|+|++.+....+.|-.-+.+.+.|...||. +.+-+++|.+. ++.+ ++
T Consensus 56 Sa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA-----~~EQm~~L~~~----gI~yevvPGVss~~AAAA~L~~EL 126 (254)
T COG2875 56 SASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA-----LAEQMRELEAL----GIPYEVVPGVSSFAAAAAALGIEL 126 (254)
T ss_pred cCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH-----HHHHHHHHHHc----CCCeEEeCCchHHHHHHHHhCcee
Confidence 347799999999999999998889999999999964 34444444331 1110 00
Q ss_pred --------EEecCCcC--hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHH-------------------
Q 012929 280 --------IGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS------------------- 330 (453)
Q Consensus 280 --------~~~~~p~~--i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e------------------- 330 (453)
+-.+.+.. ..++-+.+..++++..- --+++|++....-+=+.+.-+|..+
T Consensus 127 T~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~aT-m~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~G 205 (254)
T COG2875 127 TVPGVSQTVILTRPSGRTPVPEKESLAALAKHGAT-MVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRG 205 (254)
T ss_pred ecCCcceeEEEEccccCCCCCchhHHHHHHhcCce-eEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEe
Confidence 00112211 11233456777776543 4677888776544444443233211
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEEeC
Q 012929 331 DFRTVVDTLIELVPGMQIATDIICGF 356 (453)
Q Consensus 331 ~~~~~i~~lr~~~pgi~v~~~~IvG~ 356 (453)
.+.++.++.+++ ||.-++-+|+|-
T Consensus 206 TL~dIa~kv~~~--~i~rTAlIiVG~ 229 (254)
T COG2875 206 TLEDIAEKVKEA--GIRRTALIIVGD 229 (254)
T ss_pred eHHHHHHHHHhc--CceeEEEEEEcc
Confidence 156667777788 888888888884
No 238
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=58.47 E-value=1e+02 Score=28.00 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=49.4
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhh---hcCCccEE-EcCCChhHHHHHHHHHhcC
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---KELEGVSI-VGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~---~~~~~d~v-vG~~~~~~l~~~l~~~~~g 168 (453)
++||+++|.--+=.+-.-.++.+.++..-+.+++++++=..-+..|-+ .....+.+ +-+...+.++.-+-..+++
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVLKG 177 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHhcc
Confidence 349999997655444445677788888877788887776666777743 34455555 7776666666544444443
No 239
>COG1679 Predicted aconitase [General function prediction only]
Probab=58.46 E-value=18 Score=36.64 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=50.4
Q ss_pred eEEEEeeCCCcC-hhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccC
Q 012929 60 TIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N-~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (453)
.+-++++|||+- ..+-..++..|...+ .+.+.++||-.++.|...+.. .-.++.+++.|.++|-.=|+.-
T Consensus 289 epdli~iGcPHaS~~E~~~la~~l~~r~-----~~~~~~~~V~~sr~v~~~a~~--~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 289 EPDLIALGCPHASLEELRRLAELLKGRK-----RPAGVPLYVTTSRAVYAQARK--EGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhccC-----CCCCCCEEEEcCHHHHHHHhh--hhhHHHHHHcCCEEecCceeEE
Confidence 667999999995 455666777777665 235678999888888766532 3346677778888887778764
No 240
>PRK09271 flavodoxin; Provisional
Probab=57.11 E-value=35 Score=30.22 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCeee-------------CCCCCCcEEEEeecccccch-HHHHHHHHHHHhh---CCCCEEEEccc
Q 012929 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINTCTVKSPS-QSAMDTLIAKCKS---AKKPLVVAGCV 134 (453)
Q Consensus 75 se~~~~~L~~~g~~~~-------------~~~~~AD~viinTCtv~~~a-~~~~~~~i~~~~~---~~~~vVvgGc~ 134 (453)
.+.|+..|.+.|+++. .+..++|+++|-|.|.-... ...+...+..++. +++++.+=|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4566777788888751 12235799999887764321 2234444444433 45666555554
No 241
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=55.51 E-value=26 Score=33.40 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=41.6
Q ss_pred eCCCcChhHHH-HHHHHHHHcC--C--eeeCC--CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEccccCC
Q 012929 66 FGCSHNQSDSE-YMAGQLSAFG--Y--ALTDN--SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQG 137 (453)
Q Consensus 66 ~GC~~N~~dse-~~~~~L~~~g--~--~~~~~--~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~a~~ 137 (453)
.||.++..|.. .+...|...- | ..++. ..+.|+++| .=+|.+ +.-.+.++++|++-+.|| +|-|.++.
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPEvDValV-EGsV~~---ee~lE~v~ElRekakivVA~GsCA~~G 90 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPEVDVALV-EGSVCD---EEELELVKELREKAKIVVALGSCAVTG 90 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCcccEEEE-ecccCc---HHHHHHHHHHHHhCcEEEEEecchhcC
Confidence 38999888864 4445554331 1 11111 223899999 446653 345788888887755544 78887664
No 242
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.38 E-value=4.6 Score=34.66 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=14.8
Q ss_pred EeCCCCCCCcccccccc
Q 012929 197 PINVGCLGACTYCKTKH 213 (453)
Q Consensus 197 ~isrGC~~~CsFC~~~~ 213 (453)
+..+||-+.|+||.+..
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 57899999999999863
No 243
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=53.98 E-value=13 Score=29.30 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCeeeCCCCC-----CcEEEE
Q 012929 77 YMAGQLSAFGYALTDNSEE-----ADIWLI 101 (453)
Q Consensus 77 ~~~~~L~~~g~~~~~~~~~-----AD~vii 101 (453)
-+...|++.||++++...+ +|.++|
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVv 41 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVV 41 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEE
Confidence 4788999999999986544 555655
No 244
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.59 E-value=82 Score=27.37 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+.+.+.++.+++. |+.-.. +|+|= |.-.++|+.+..+.+++++++.++ -|||++.
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF------~pgt~~~ 122 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVF------APGTPPE 122 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEE------CcCCCHH
Confidence 45677889999999998 764222 56664 334567777667778899987654 4677664
No 245
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=52.39 E-value=3.5e+02 Score=29.64 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCCCCCC---ceEE----EEec-CCcChhH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGS---TMLR----IGMT-NPPFILE 290 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~-d~~~~l~~Ll~~l~~~i~~~~~---~~ir----~~~~-~p~~i~~ 290 (453)
..+.++.+.-+..+.+.|+..|.+.|..++.... -...+-.+.|+.+.+.++ +. .++| ++|. .|+++.+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~--~~~l~~l~Rg~N~~gy~~ypd~vv~ 99 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP--NTPLQMLLRGQNLVGYRHYPDDVVE 99 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC--CCEEEEEeccccccccccccchhhH
Confidence 4577788888888888899999887543321100 011234566677766543 21 1222 1121 2444443
Q ss_pred HHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCCCCCHHHHHHHHH
Q 012929 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVN 369 (453)
Q Consensus 291 ~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~PgET~ed~~~tl~ 369 (453)
.. +....+ .+...+.+.. +.|+- ..+...++.+++. |..+...+-+ +-|-.|.+.+.+.++
T Consensus 100 ~~--v~~A~~--~Gvd~irif~-~lnd~-----------~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~t~~~~~~~a~ 161 (592)
T PRK09282 100 KF--VEKAAE--NGIDIFRIFD-ALNDV-----------RNMEVAIKAAKKA--GAHVQGTISYTTSPVHTIEKYVELAK 161 (592)
T ss_pred HH--HHHHHH--CCCCEEEEEE-ecChH-----------HHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHH
Confidence 32 333333 2334454432 33442 4567777888888 7766655533 236677888888888
Q ss_pred HHHhcCCCeEEE
Q 012929 370 LIKEYKFPQVHI 381 (453)
Q Consensus 370 ~i~~l~~~~i~i 381 (453)
-+.+++.+.+.+
T Consensus 162 ~l~~~Gad~I~i 173 (592)
T PRK09282 162 ELEEMGCDSICI 173 (592)
T ss_pred HHHHcCCCEEEE
Confidence 888888776554
No 246
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=51.63 E-value=1.8e+02 Score=27.07 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~--l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
+-+.-.+-+|++.+.+.|+..+. +.|.++ -.... -=.++++.+.+... -...+.+...+|....+. +.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~f---vpn~~-~g~~~i~~i~~~~~--~~~DvHLMv~~P~~~i~~---~~- 77 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIMDGHF---VPNLT-FGPDIIKAIRKITD--LPLDVHLMVENPERYIEE---FA- 77 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEEBSSS---SSSB--B-HHHHHHHHTTSS--SEEEEEEESSSGGGHHHH---HH-
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeeccccc---CCccc-CCHHHHHHHhhcCC--CcEEEEeeeccHHHHHHH---HH-
Confidence 44566788999999999888655 445333 22211 11677888865421 123455655566543332 22
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
. .++.++.+-+|+.+ +..+.++.+|++ |+....-+ -|+...+.++. ++. .+|
T Consensus 78 --~--~g~~~i~~H~E~~~--------------~~~~~i~~ik~~--g~k~Gial---nP~T~~~~~~~---~l~--~vD 129 (201)
T PF00834_consen 78 --E--AGADYITFHAEATE--------------DPKETIKYIKEA--GIKAGIAL---NPETPVEELEP---YLD--QVD 129 (201)
T ss_dssp --H--HT-SEEEEEGGGTT--------------THHHHHHHHHHT--TSEEEEEE----TTS-GGGGTT---TGC--CSS
T ss_pred --h--cCCCEEEEcccchh--------------CHHHHHHHHHHh--CCCEEEEE---ECCCCchHHHH---Hhh--hcC
Confidence 2 23356777788544 245788999999 88775444 36544444432 222 366
Q ss_pred eEEEEecccCCCC
Q 012929 378 QVHISQFYPRPGI 390 (453)
Q Consensus 378 ~i~i~~~sp~pGT 390 (453)
.+.+..- .||.
T Consensus 130 ~VlvMsV--~PG~ 140 (201)
T PF00834_consen 130 MVLVMSV--EPGF 140 (201)
T ss_dssp EEEEESS---TTT
T ss_pred EEEEEEe--cCCC
Confidence 6665554 4554
No 247
>PRK15452 putative protease; Provisional
Probab=50.54 E-value=94 Score=32.72 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=52.8
Q ss_pred CCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCC-CHHHHHHHHHHHHhcCCCeEEE
Q 012929 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 303 ~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgE-T~ed~~~tl~~i~~l~~~~i~i 381 (453)
.+...|.+|.++.+-+. -.+.++.+++.++++.++++ |..+...+= -+|.+ ..+.+.+.++.+.++++|.+-+
T Consensus 22 ~GADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~n-~i~~e~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 22 YGADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVVN-IAPHNAKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred CCCCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEec-CcCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45678999999888653 34678899999999999999 855433211 23443 3456677777777888887766
Q ss_pred Ee
Q 012929 382 SQ 383 (453)
Q Consensus 382 ~~ 383 (453)
..
T Consensus 96 ~d 97 (443)
T PRK15452 96 SD 97 (443)
T ss_pred cC
Confidence 53
No 248
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=50.35 E-value=2.4e+02 Score=27.06 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
++++..++++.+.+.|++.+.+= ++ .+. ..-.+.++++.+.++ ....+++. .|...-.+...++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiK---vg---~~~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLK---VG---RDP-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe---cC---CCH-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHHh
Confidence 57889999999999999988773 11 110 122567778777664 34567776 3432212222233333332
Q ss_pred CCCceeeecccCCCCHHHHHhhcC
Q 012929 302 PCVYSFLHVPVQSGSDAVLSAMNR 325 (453)
Q Consensus 302 ~~~~~~l~iglESgs~~vLk~m~R 325 (453)
....++.-|+...+.+.++.+++
T Consensus 155 -~~i~~iEeP~~~~d~~~~~~l~~ 177 (265)
T cd03315 155 -LGLDYVEQPLPADDLEGRAALAR 177 (265)
T ss_pred -cCCCEEECCCCcccHHHHHHHHh
Confidence 23468888887666555555544
No 249
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=50.31 E-value=32 Score=30.80 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=40.4
Q ss_pred EEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 012929 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (453)
Q Consensus 63 i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv 130 (453)
=-+-||+++..--+.-...++.. ....+|++|||=.+-.+..=.-++..|..+-..|.+|++
T Consensus 67 ~gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 67 PGSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 34679999887766666666543 235699999996543332222356667767778888765
No 250
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=49.62 E-value=2.9e+02 Score=27.90 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=80.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC--------CC------CcCCCHHHHHHHHHHhCCCCCCceEEEEecC
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY--------GR------DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y--------g~------d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~ 284 (453)
...+.+.-++++.+|.+.|..-+.+.-.|.-.- +. |.-.+..--+..+.. +...+|+ |
T Consensus 29 ~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~-----g~dkiRI---N 100 (346)
T TIGR00612 29 DTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAK-----GVAKVRI---N 100 (346)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHh-----ccCeEEE---C
Confidence 356889999999999999988777764332110 00 000011112222222 3344554 6
Q ss_pred CcChh--HHHHHHHHHHhCCCCceeeecccCCCC--HHHHHhhcCCC---CHHHHHHHHHHHHHhCCCcEEEEEEEEeCC
Q 012929 285 PPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIICGFP 357 (453)
Q Consensus 285 p~~i~--~~l~~l~~l~~~~~~~~~l~iglESgs--~~vLk~m~R~~---t~e~~~~~i~~lr~~~pgi~v~~~~IvG~P 357 (453)
|.++- +.+.++.+.++..+. -+-||+-||| .+++++.+... -.+...+-++.+.+. |+. |+++-+-
T Consensus 101 PGNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~--~F~---diviS~K 173 (346)
T TIGR00612 101 PGNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKL--GFR---NVVLSMK 173 (346)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHC--CCC---cEEEEEE
Confidence 76654 344455555555444 4668888877 55555543322 235555666677777 654 7788887
Q ss_pred CCCHHHHHHHHHHHHhc
Q 012929 358 GETDEDFNQTVNLIKEY 374 (453)
Q Consensus 358 gET~ed~~~tl~~i~~l 374 (453)
.-+.-...+..+++.+.
T Consensus 174 sSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 174 ASDVAETVAAYRLLAER 190 (346)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666666666666543
No 251
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=49.61 E-value=33 Score=32.30 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=35.4
Q ss_pred CCCCCCCCCceEEEE---eeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEE
Q 012929 50 SLSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWL 100 (453)
Q Consensus 50 ~~~~~~~~~~~~~i~---t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~vi 100 (453)
-.+++-|..++||+- |-+..+|. -..|...|.+.||.++++|++|..|+
T Consensus 13 fLdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~l 64 (215)
T PF05818_consen 13 FLDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWL 64 (215)
T ss_pred EeCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEE
Confidence 345555667788874 45655532 23477889999999999999999764
No 252
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=49.01 E-value=2.7e+02 Score=27.73 Aligned_cols=134 Identities=16% Similarity=0.275 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCC----cCCCH----HHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 227 v~Ei~~l~~~G~~eI~l~~~d~~~yg~d----~~~~l----~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
++.++.+.+.|++.+.++--.-+.++.. ....| .++++++.+ + + ..+-++-++.. ...++.++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-l---G-miiDvSH~s~~----~~~dv~~~ 186 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-L---G-IIIDLSHLSER----TFWDVLDI 186 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-c---C-CEEEcCCCCHH----HHHHHHHh
Confidence 6788999999999999885444444421 11122 355555543 2 2 23333322222 12223344
Q ss_pred HhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC----CCCCHHHHHHHHHHHHhc
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF----PGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~----PgET~ed~~~tl~~i~~l 374 (453)
...|-+ +=+.+.+.+..-.|+.+-++++ .+.+. |-.+...+.-+| +.-|.+++.+-++.+.++
T Consensus 187 s~~Pvi-------aSHsn~ral~~h~RNltD~~i~----~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l 253 (309)
T cd01301 187 SNAPVI-------ASHSNARALCDHPRNLTDAQLK----AIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDL 253 (309)
T ss_pred cCCCEE-------EeccChHHhcCCCCCCCHHHHH----HHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 333423 2234555565556777655544 45565 655655555555 357889999999887765
Q ss_pred -CCCeEEEE
Q 012929 375 -KFPQVHIS 382 (453)
Q Consensus 375 -~~~~i~i~ 382 (453)
+.+++.+.
T Consensus 254 ~G~dhVgiG 262 (309)
T cd01301 254 IGIDHVGLG 262 (309)
T ss_pred cCCCeEEEC
Confidence 77877774
No 253
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.11 E-value=96 Score=27.75 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=46.1
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeee-------CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~-------~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
.+|++ +||..+..=.+++...|...|.... ....+-|++++=| +...+ ..+.+.++.+++.|.+|| +
T Consensus 31 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS--~sG~t-~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 31 KRIFV--AGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAIS--GSGET-ESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred CEEEE--EecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEe--CCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 46655 4555667777888888888886553 2233457777744 33222 346788888999998765 6
Q ss_pred Ecccc
Q 012929 131 AGCVP 135 (453)
Q Consensus 131 gGc~a 135 (453)
++-..
T Consensus 106 T~~~~ 110 (179)
T TIGR03127 106 TTNPE 110 (179)
T ss_pred ECCCC
Confidence 66443
No 254
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=47.54 E-value=66 Score=30.52 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
+.++|+...-|||+. | ...|+.|.+-++.|.+.|.-||.|-| .+ |...+..+..+|+.+.+.+
T Consensus 149 ~vRGYVScvvGCPye----------G---~v~P~kVa~V~k~ly~mGCyEiSLGD-TI---GvGTpgtm~~ML~~Vmk~v 211 (316)
T KOG2368|consen 149 RVRGYVSCVVGCPYE----------G---AVQPSKVAEVVKKLYEMGCYEISLGD-TI---GVGTPGTMKRMLDAVMKVV 211 (316)
T ss_pred ccceEEEEEecCCcc----------C---CcCHHHHHHHHHHHHhCCcEEEeccc-cc---ccCCchhHHHHHHHHHHhC
Confidence 456788888999873 3 45788888999999999999999843 44 3333456788898888877
Q ss_pred C
Q 012929 271 P 271 (453)
Q Consensus 271 ~ 271 (453)
|
T Consensus 212 P 212 (316)
T KOG2368|consen 212 P 212 (316)
T ss_pred C
Confidence 6
No 255
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=45.77 E-value=2.1e+02 Score=27.83 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=63.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCCceEEEEe-cCCc----C--
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGM-TNPP----F-- 287 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~-d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~-~~p~----~-- 287 (453)
|.++..++...+..+...|++.|..+..|....+. .. -..-.+|++.+.+.. +. ++++- .+|. .
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~---~~--f~ig~a~~Peghp~~~~ 142 (272)
T TIGR00676 68 IGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF---GD--FDIGVAAYPEKHPEAPN 142 (272)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc---CC--eeEEEEeCCCCCCCCCC
Confidence 44678899999999999999999855445554332 10 124567787775532 22 33332 3443 2
Q ss_pred hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCC
Q 012929 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357 (453)
Q Consensus 288 i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~P 357 (453)
...+++.|.+-.. .++.++. -| + -|+.+.+.+.++.+++. |+.+ =++.|+.
T Consensus 143 ~~~~~~~L~~K~~--aGA~f~i--TQ---------~--~fd~~~~~~~~~~~~~~--gi~~--PIi~Gi~ 193 (272)
T TIGR00676 143 LEEDIENLKRKVD--AGADYAI--TQ---------L--FFDNDDYYRFVDRCRAA--GIDV--PIIPGIM 193 (272)
T ss_pred HHHHHHHHHHHHH--cCCCeEe--ec---------c--ccCHHHHHHHHHHHHHc--CCCC--CEecccC
Confidence 2222222222112 2333211 11 1 35677788888888887 6543 4667764
No 256
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=45.33 E-value=1.1e+02 Score=24.33 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+.+.+..+.+++..|+..+..-+.-+ +.-++.+.++-+.+.+...+.+.++.+.+|.-..
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~ 76 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVF 76 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhhH
Confidence 356777777887776666565555555 1235667788888889999999999999887654
No 257
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=45.23 E-value=2.4e+02 Score=27.23 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=66.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC------CcCCCHHHHHHHHHHhCCCCCCceEEEE---ecCCcC--
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVAELPPDGSTMLRIG---MTNPPF-- 287 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~------d~~~~l~~Ll~~l~~~i~~~~~~~ir~~---~~~p~~-- 287 (453)
|.++..++.+++..+.+.|++.|.++..|....+. ....+-.+|++.+..... +...+... -.||..
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~--~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 68 RDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENG--GGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--CCCccccccCCCcCCCCCC
Confidence 34455889999999999999999988666665542 112356778877765311 11112211 123332
Q ss_pred hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCC
Q 012929 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359 (453)
Q Consensus 288 i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgE 359 (453)
...+++.|.+-.. .++.++. -|- -|+.+.+.+.++.+++. |+. .-+|.|+..=
T Consensus 146 ~~~~~~~L~~Ki~--aGA~f~i--TQ~-----------~fd~~~~~~~~~~~~~~--gi~--vPIi~GI~p~ 198 (274)
T cd00537 146 LEEDIKRLKRKVD--AGADFII--TQL-----------FFDNDAFLRFVDRCRAA--GIT--VPIIPGIMPL 198 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEe--ecc-----------cccHHHHHHHHHHHHHc--CCC--CCEEeecccc
Confidence 2222222222112 2333321 111 25667888888889988 763 4577777553
No 258
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=44.83 E-value=4e+02 Score=28.07 Aligned_cols=146 Identities=13% Similarity=0.172 Sum_probs=88.4
Q ss_pred ccccccc-CccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecC
Q 012929 209 CKTKHAR-GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284 (453)
Q Consensus 209 C~~~~~r-g~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~ 284 (453)
|-.+.-. |...--+.++|-+-++.+..+ +...|.|+|...+. ..+|.++++...+. +...+.+. +|
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e~----g~~hVqin-Tn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIAREE----GYDHVQLN-TN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhhc----CccEEEEc-cC
Confidence 5444333 333455678877777777765 56788888754332 24678888777653 44444443 33
Q ss_pred CcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-CCcEEEEEEEEeCCCCCHHH
Q 012929 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDED 363 (453)
Q Consensus 285 p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~-pgi~v~~~~IvG~PgET~ed 363 (453)
.-.+... .++.+-+++ ++.+.|.+.+...+++.+..+ .-++..+++.+++.- +.+.+-.+++=|. ++.+
T Consensus 148 GirlA~~-~~~~~~l~~-ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgv---Nd~~ 217 (475)
T COG1964 148 GIRLAFD-PEYVKKLRE-AGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGV---NDHE 217 (475)
T ss_pred ceeeccC-HHHHHHHHh-cCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhccc---ChHH
Confidence 2222211 122333333 345788898988888886655 334555999999982 1255666777554 6777
Q ss_pred HHHHHHHHHhc
Q 012929 364 FNQTVNLIKEY 374 (453)
Q Consensus 364 ~~~tl~~i~~l 374 (453)
...-++|..+.
T Consensus 218 lG~iirfa~~n 228 (475)
T COG1964 218 LGAIIRFALNN 228 (475)
T ss_pred HHHHHHHHHhc
Confidence 77888888753
No 259
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.62 E-value=2.8e+02 Score=26.19 Aligned_cols=137 Identities=10% Similarity=0.037 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCC
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~ 302 (453)
..+.++-++.+.+.|+.++.+++-+...++. + ...++++++.+.. +..-+--+-+. .. +++..+...
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~--~-~~~~~i~~i~~~~---~~pv~~~GGI~--s~----~d~~~~l~~- 92 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGR--E-TMLDVVERVAEEV---FIPLTVGGGIR--SL----EDARRLLRA- 92 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccC--c-ccHHHHHHHHHhC---CCCEEEeCCCC--CH----HHHHHHHHc-
Confidence 3356666677777899999999866432222 2 2357888887654 22211111111 11 223333332
Q ss_pred CCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEe-----------CCCCCHHHHHHHHHHH
Q 012929 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLI 371 (453)
Q Consensus 303 ~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG-----------~PgET~ed~~~tl~~i 371 (453)
++..+.+|-... .+.+.+.++++.+.+. .+.++.|+-.+ -+.+|..+..+.+..+
T Consensus 93 -G~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 93 -GADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred -CCceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 356666663221 1234444544444322 47777775533 3345666666667777
Q ss_pred HhcCCCeEEEEeccc
Q 012929 372 KEYKFPQVHISQFYP 386 (453)
Q Consensus 372 ~~l~~~~i~i~~~sp 386 (453)
.+.+++.+.++....
T Consensus 159 ~~~G~d~i~v~~i~~ 173 (243)
T cd04731 159 EELGAGEILLTSMDR 173 (243)
T ss_pred HHCCCCEEEEeccCC
Confidence 888999888877664
No 260
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.15 E-value=3.6e+02 Score=27.39 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
..++|..+-|||+.-. -+++.+++-++.+.+.|+..|.|.| .+ |.-.+..+.++++.+.+.++
T Consensus 178 v~~~is~~fg~p~~~r-------------~~~~~l~~~~~~~~~~Gad~I~l~D-T~---G~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 178 VRGYVSCVVGCPIEGP-------------VPPSKVAYVAKELYDMGCYEISLGD-TI---GVGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred EEEEEEeeecCCccCC-------------CCHHHHHHHHHHHHHcCCCEEEecC-Cc---CCcCHHHHHHHHHHHHHhCC
Confidence 3456677778865422 3789999999999999999999876 33 33234577889988877653
No 261
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.87 E-value=1.1e+02 Score=25.47 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEeeCCCcChhHHHHHHHHHHHcCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 012929 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (453)
Q Consensus 63 i~t~GC~~N~~dse~~~~~L~~~g~~~~~~------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv 130 (453)
|.-+||..+..=.+++...|...|...... ..+-|++++= +....+ ..+.+.++.+|++|.+||+
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i--S~sG~t-~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI--SNSGET-DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEE--eCCCCC-HHHHHHHHHHHHCCCeEEE
Confidence 344566677777788888888777554211 2334777763 333222 3578888999999988764
No 262
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.70 E-value=2.4e+02 Score=25.17 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=49.7
Q ss_pred CceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCC--------C------HHHHHHHHH
Q 012929 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVN 369 (453)
Q Consensus 304 ~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgE--------T------~ed~~~tl~ 369 (453)
++..+.+......+.... ..+..+..+.++++ |+.+.+--....... . .+.+.+.++
T Consensus 8 G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 8 GFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp THSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcccccc-------hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 456666665544443322 56778888888899 988665444444332 2 688899999
Q ss_pred HHHhcCCCeEEEEec
Q 012929 370 LIKEYKFPQVHISQF 384 (453)
Q Consensus 370 ~i~~l~~~~i~i~~~ 384 (453)
+++.++...+.+...
T Consensus 79 ~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHTBSEEEEECT
T ss_pred HHHHhCCCceeecCc
Confidence 999999998888855
No 263
>PLN02321 2-isopropylmalate synthase
Probab=43.52 E-value=4.9e+02 Score=28.78 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=76.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC---ce-EE---EEecCCcChhH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS---TM-LR---IGMTNPPFILE 290 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~---~~-ir---~~~~~p~~i~~ 290 (453)
-.+.+.++-++-++.|.+.|++.|.... ...+.+ + .+.++.|.+.+.. +. .+ .. ++..+...+..
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~---D-~e~vr~i~~~~~~-~v~~~~~v~~i~a~~ra~~~dId~ 173 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPD---D-LEAVKTIAKEVGN-EVDEDGYVPVICGLSRCNKKDIDA 173 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCcc---H-HHHHHHHHHhccc-CCCccccceeeeeehhccHHhHHH
Confidence 4678999999999999999999998742 112221 2 3346666543210 10 01 11 11122222221
Q ss_pred HHHHHHHHHhCCCCceeeecccCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCC---HHHH
Q 012929 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGET---DEDF 364 (453)
Q Consensus 291 ~l~~l~~l~~~~~~~~~l~iglESgs~~v-Lk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET---~ed~ 364 (453)
..+... ...-..+|+-+ +.|+.- .+.+++. ...+.+.+.++.+++. |.. ++.++.+..+ .+.+
T Consensus 174 ----A~~al~-~a~~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l 242 (632)
T PLN02321 174 ----AWEAVK-HAKRPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFL 242 (632)
T ss_pred ----HHHHhc-CCCCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHH
Confidence 111111 11113456655 445543 3555543 2456677778888887 653 4555665443 4445
Q ss_pred HHHHHHHHhcCCCeEEE
Q 012929 365 NQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 365 ~~tl~~i~~l~~~~i~i 381 (453)
.+.++.+.+.+.+.+++
T Consensus 243 ~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 243 YRILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 55666666777766554
No 264
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=43.46 E-value=4.5e+02 Score=28.24 Aligned_cols=149 Identities=13% Similarity=-0.008 Sum_probs=79.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCC----ceEEEEecCCcChhHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLK 293 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~ 293 (453)
-...+.++-++-++.|.+.|+..|.... ...+. ...+.++++.+.....+. ....+...... ..+.++
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~----~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId 171 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSE----EEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIE 171 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHH
Confidence 4678999999999999999999988743 22221 224446666543210000 01122111111 111221
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCH---HHHHHH
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD---EDFNQT 367 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~v-Lk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~---ed~~~t 367 (453)
...+... ......+++-+= .|+.- ...+++. ...+.+.+.++.+++. |.. .+.+|.+..+. +.+.+.
T Consensus 172 ~a~~a~~-~a~~~~V~i~i~-~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~ 244 (503)
T PLN03228 172 AAWEALK-YAKRPRILAFTS-TSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKI 244 (503)
T ss_pred HHHHhhc-ccCCCEEEEEec-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHH
Confidence 1111111 123356666553 44444 4555553 3456677888888888 764 35666665443 334566
Q ss_pred HHHHHhcCCCeEEE
Q 012929 368 VNLIKEYKFPQVHI 381 (453)
Q Consensus 368 l~~i~~l~~~~i~i 381 (453)
++.+.+.+.+.+.+
T Consensus 245 ~~~a~~~Gad~I~l 258 (503)
T PLN03228 245 LGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHhcCCCEEEE
Confidence 66667778877654
No 265
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.27 E-value=1.4e+02 Score=27.13 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
+.+...++.+.+++.+||+.+.+. .|+- ++++-++.++.+.+.+++.+.+..
T Consensus 57 ~~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 57 KPDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEc
Confidence 345567788899999999998765 5553 455567789999999999777654
No 266
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=42.73 E-value=53 Score=30.58 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHHHHHH-HcCCeee--CC--------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 74 DSEYMAGQLS-AFGYALT--DN--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 74 dse~~~~~L~-~~g~~~~--~~--------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
-.+.|+..|+ +.||+++ ++ .+++|++|+|+|.-..... ..++.++++-+.|..+|
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-~~~~al~~~v~~Ggglv 85 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-EQRAALRDYVENGGGLV 85 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-HHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-HHHHHHHHHHHcCCCEE
Confidence 4567777787 6788875 22 2579999999997211222 23445566656776665
No 267
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=1.4e+02 Score=30.39 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=52.5
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
...|.+|.+-.+ ++.-...++.+++.+.++.++++ |..+...+=.=+-.+..+.+.+.++.+.++++|.+-+.-
T Consensus 27 ADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 27 ADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred CCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 567889987333 33333568999999999999999 864433322223345567789999999999998776643
No 268
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=42.29 E-value=4.2e+02 Score=27.60 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=86.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHH-HHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK-EIA 296 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~-~l~ 296 (453)
-.+.++++-++-++.|-+.|+..|.......+. .-.+.++.+.... +. . .. .....+....+ .+.
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~---~~-~--~~-~~~~~~~~~~~~~~e 83 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKA---GL-F--IC-ALIAALARAIKRDIE 83 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhc---Cc-c--cc-hhhhhhHHhHHhhHH
Confidence 568899999999999999999999875432221 1255666665322 22 1 11 11111111111 344
Q ss_pred HHHhCCCCceeeecccCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vL-k~m~R--~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
.+... ....+|+=+ +.|+--+ ..+++ ....+.+.+.++.+++. |+.+..+..-.+ .-+.+.+.+.++.+..
T Consensus 84 a~~~a--~~~~i~if~-~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 84 ALLEA--GVDRIHIFI-ATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHHhC--CCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHH
Confidence 44443 234566644 3444433 34442 33567788888999999 888887777777 5566777777887777
Q ss_pred cCCCeEEE
Q 012929 374 YKFPQVHI 381 (453)
Q Consensus 374 l~~~~i~i 381 (453)
.+.+.+++
T Consensus 158 ~ga~~i~l 165 (409)
T COG0119 158 AGADRINL 165 (409)
T ss_pred cCCcEEEE
Confidence 77666654
No 269
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=42.29 E-value=32 Score=33.93 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCCEE-EE--ccccCCch
Q 012929 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPLV-VA--GCVPQGSR 139 (453)
Q Consensus 78 ~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-~~~vV-vg--Gc~a~~~~ 139 (453)
+...|.+.|.. +.+-|++|+|+|++.. +-.=..-++.+++=+ +.+.+ ++ ||.|....
T Consensus 91 v~~LL~ktgv~----p~dIdiLVvncs~f~p-tPSLsamIvnr~~mr~di~~~nLsGMGCsAglia 151 (290)
T PF08392_consen 91 VDDLLAKTGVK----PSDIDILVVNCSLFNP-TPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIA 151 (290)
T ss_pred HHHHHHHcCCC----HHHCCEEEEECcCCCc-CCcHHHHHHHHhCCCcCeeeecccCCcchhhHHH
Confidence 34556666743 5688999999999853 222234456666432 34433 33 68876544
No 270
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.65 E-value=2.4e+02 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----C--CCHHHHHHHHHHh
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----G--VNLPILLNAIVAE 269 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~----~--~~l~~Ll~~l~~~ 269 (453)
|.++.+.|.+.+..+.+.|++.|..+..|...-+... + ....+|++.+.+.
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~ 124 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSK 124 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHh
Confidence 4566778899999999999999976655555433211 1 2467888888764
No 271
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=41.45 E-value=1.9e+02 Score=30.02 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=73.3
Q ss_pred CCCCccccccccc-cCc----c---c-------cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------C---C
Q 012929 202 CLGACTYCKTKHA-RGH----L---G-------SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------G---V 257 (453)
Q Consensus 202 C~~~CsFC~~~~~-rg~----~---r-------sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~------~---~ 257 (453)
|.++|.||..... +++ + + +=+.-..-..++.+.+.|+.++.|+=..+ ..+. . .
T Consensus 85 ~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT---~p~lR~klm~n~~A~ 161 (414)
T COG1625 85 CGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTT---NPELRAKLMKNPNAE 161 (414)
T ss_pred cCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeC---CHHHHHHHhcCCcHH
Confidence 9999999986421 111 0 0 00111223445558889999998864222 1211 1 1
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEEecCC-----cChhHHHHHHHHHHhCCCCcee---eecccCCCCHHHHHhhcCCCCH
Q 012929 258 NLPILLNAIVAELPPDGSTMLRIGMTNP-----PFILEHLKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTL 329 (453)
Q Consensus 258 ~l~~Ll~~l~~~i~~~~~~~ir~~~~~p-----~~i~~~l~~l~~l~~~~~~~~~---l~iglESgs~~vLk~m~R~~t~ 329 (453)
.+.++|+...+. ......---+-| +.+.+.+.+|..+..+ .+.- +.+|+=.++...... -.+++.
T Consensus 162 ~~le~L~~f~~~----~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~--~~~~~~~~pvGlt~~n~~~i~~-~t~~~l 234 (414)
T COG1625 162 QLLELLRRFAER----CIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAH--EVILMRVVPVGLTRYNRPGIRP-PTPHEL 234 (414)
T ss_pred HHHHHHHHHHHh----hhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcC--ceeEEEeecceeeecCCCCCCC-CCHHHH
Confidence 344555555442 111111111223 2344444555554332 3333 377777766651111 123467
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCH
Q 012929 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETD 361 (453)
Q Consensus 330 e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ 361 (453)
+++.+..+.+.+.+++ ..++|-|-.++
T Consensus 235 ~~~k~i~re~~~E~~~-----~~V~g~Pl~~~ 261 (414)
T COG1625 235 EEFKEIVREFDRELGS-----IRVTGTPLPDA 261 (414)
T ss_pred HHHHHHHHHHHHhcCc-----eEEeCCCCCch
Confidence 7888888888887665 55667665443
No 272
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=41.28 E-value=2.2e+02 Score=27.71 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcCh-------hHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKE 294 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i-------~~~l~~ 294 (453)
.+..+.+-+..|.+.|+++|.+.+-++.. |. .+.+|.+.+...-. ....+.++ .|-.- .++.++
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-G~----Ey~~l~~~v~~~~~--~F~~i~~g--~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-GE----EYEKLRATVEAYKH--DFKKIVLG--RPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-SH----HHHHHHHHHHHHCC--CSSEEEEE----SCSS-----SHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-cH----hHHHHHHHHHHhhc--cCCeEEec--ccccccccccCChHHHHH
Confidence 34555666677788999999998865543 33 45566666544322 33456665 44322 233334
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCC--C-CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHH
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--Y-TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 371 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~-t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i 371 (453)
+.+.+... ++-.. .++.+=.|+-| + ...-|..+-..+++. +.-.+...-+=|+| ++++.+..+
T Consensus 127 va~aL~~~-------~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~-~~~~v~vgtvEG~P-----~~~~vi~~L 192 (262)
T PF06180_consen 127 VAEALAEE-------FPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKH-GYPNVFVGTVEGYP-----SLEDVIARL 192 (262)
T ss_dssp HHHHHHCC-------S-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCC-T-TTEEEEETTSSS-----BHHHHHHHH
T ss_pred HHHHHHHh-------ccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhC-CCCeEEEEEeCCCC-----CHHHHHHHH
Confidence 44433321 01000 11222222221 1 123344444444444 21334444455676 377788889
Q ss_pred HhcCCCeEEEEecccCCCCHhH
Q 012929 372 KEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 372 ~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
++.++..+.+.||+-..|.=+.
T Consensus 193 ~~~g~k~V~L~PlMlVAGdHa~ 214 (262)
T PF06180_consen 193 KKKGIKKVHLIPLMLVAGDHAK 214 (262)
T ss_dssp HHHT-SEEEEEEESSS--HHHH
T ss_pred HhcCCCeEEEEecccccchhhh
Confidence 9999999999999999998766
No 273
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=41.18 E-value=44 Score=35.99 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCch
Q 012929 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (453)
Q Consensus 82 L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (453)
+++.|--+|-- .-+-+|.+-.|.=.....+.++.+++.+.++|-.||++||+|....
T Consensus 487 IR~vG~PiV~G-~IPGIia~vgC~nyp~g~k~v~~iaeefl~RnyiVvttGC~Am~ig 543 (772)
T COG1152 487 IRNVGVPIVMG-TIPGIIAVIGCPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMDIG 543 (772)
T ss_pred HhhcCCceeec-CCCeEEEEecCCCCCcchhhHHHHHHHHHHcCeEEEecchhhhhcc
Confidence 34444444332 2234555558886555567789999999999999999999987544
No 274
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=41.04 E-value=4.8e+02 Score=27.95 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCC-ceEE----EEec-CCcChhHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGS-TMLR----IGMT-NPPFILEH 291 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~--yg~d~~~~l~~Ll~~l~~~i~~~~~-~~ir----~~~~-~p~~i~~~ 291 (453)
..+.++.+.-++.+.+.|+..|...|.-++. +.. ...+-.+.|+.+.+.++.... .++| ++|. .|+++.+.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rf-l~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRF-LNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 4466777777777777899888887543322 100 112335677777765541111 1222 1111 23333332
Q ss_pred HHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCCCCCHHHHHHHHHH
Q 012929 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNL 370 (453)
Q Consensus 292 l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~PgET~ed~~~tl~~ 370 (453)
. +.....+ +...+++.. +.|+- +....+++.++++ |......+-+ +-|-.|.+.+.+..+-
T Consensus 102 f--v~~a~~~--Gidi~RIfd-~lndv-----------~nl~~ai~~vk~a--g~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 102 F--VEKSAEN--GMDVFRVFD-ALNDP-----------RNLEHAMKAVKKV--GKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred H--HHHHHHc--CCCEEEEEe-cCChH-----------HHHHHHHHHHHHh--CCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 2 3333332 334444432 22321 5566667777777 6554333311 2366677777777777
Q ss_pred HHhcCCCeEEE
Q 012929 371 IKEYKFPQVHI 381 (453)
Q Consensus 371 i~~l~~~~i~i 381 (453)
+.+++.+.+.+
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 77777665544
No 275
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=40.47 E-value=2.1e+02 Score=27.01 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCC
Q 012929 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303 (453)
Q Consensus 224 e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~ 303 (453)
.+-++-++.+.+.|+++++++|-|-. .|.+ .-.++++++.+... ..+.++- . +.. .+++..++. .
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~----~~v~vgG-G---ir~-~edv~~~l~--~ 99 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP----LGLWVDG-G---IRS-LENAQEWLK--R 99 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC----CCEEEec-C---cCC-HHHHHHHHH--c
Confidence 35566777788889999999987643 2432 33678888876532 1233331 1 111 122444444 3
Q ss_pred CceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCC--CCCHHHHHHHHHHHHhcCCCeEEE
Q 012929 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 304 ~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~P--gET~ed~~~tl~~i~~l~~~~i~i 381 (453)
++.++.+|-++.+++.++ ++++.+.+. .+.++.|+-=|.- ..+..+..+.++.+.+. ++.+++
T Consensus 100 Ga~~viigt~~~~~~~~~------------~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~ 164 (233)
T cd04723 100 GASRVIVGTETLPSDDDE------------DRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIV 164 (233)
T ss_pred CCCeEEEcceeccchHHH------------HHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEE
Confidence 456788888887643222 222222111 3566666643310 13455667777778887 777777
Q ss_pred Eecc
Q 012929 382 SQFY 385 (453)
Q Consensus 382 ~~~s 385 (453)
....
T Consensus 165 ~di~ 168 (233)
T cd04723 165 LDID 168 (233)
T ss_pred EEcC
Confidence 6664
No 276
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=40.28 E-value=15 Score=38.11 Aligned_cols=17 Identities=35% Similarity=0.923 Sum_probs=14.5
Q ss_pred CCCCCCCcccccccccc
Q 012929 199 NVGCLGACTYCKTKHAR 215 (453)
Q Consensus 199 srGC~~~CsFC~~~~~r 215 (453)
+-||+..|.||..|..+
T Consensus 6 ~~gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCCCcCCCCCCCCCC
Confidence 56999999999998753
No 277
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.13 E-value=1.6e+02 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=44.1
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
.+|+ -+||..+..=...++..|...|...... ..+-|++++ ++..... ..+.+.++.++++|.
T Consensus 14 ~~i~--i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--iS~~g~~-~~~~~~~~~a~~~g~ 88 (139)
T cd05013 14 RRIY--IFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA--ISFSGET-KETVEAAEIAKERGA 88 (139)
T ss_pred CEEE--EEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEE--EeCCCCC-HHHHHHHHHHHHcCC
Confidence 4544 4577777778888888888888654311 233466666 3333333 346777888888888
Q ss_pred CEE-EEcc
Q 012929 127 PLV-VAGC 133 (453)
Q Consensus 127 ~vV-vgGc 133 (453)
++| +++-
T Consensus 89 ~iv~iT~~ 96 (139)
T cd05013 89 KVIAITDS 96 (139)
T ss_pred eEEEEcCC
Confidence 765 4554
No 278
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=40.12 E-value=44 Score=34.63 Aligned_cols=73 Identities=16% Similarity=0.367 Sum_probs=49.1
Q ss_pred CCCceEEEEeeCCCc-ChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHH--HHHHHhhCCCCEEEEc
Q 012929 56 PGTETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT--LIAKCKSAKKPLVVAG 132 (453)
Q Consensus 56 ~~~~~~~i~t~GC~~-N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~--~i~~~~~~~~~vVvgG 132 (453)
+...++-++.+|||+ ...+-..++..|+..+. ....++||..+=.+.. .+.+ +++++.+.|.+|+.+-
T Consensus 285 ~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~-----~~~~~~~i~t~~~v~~----~a~~~G~~~~le~~G~~iv~dT 355 (400)
T PF04412_consen 285 AGDEKVDLVALGCPHLSLEELREIAELLEGRKV-----HPNVPLWITTSRAVYE----LAERMGYVERLEKAGVQIVTDT 355 (400)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCceEEEECCHHHHH----HHHhCCHHHHHHHcCCEEEccc
Confidence 445688999999999 45566677777776551 2345677764433332 2333 6677888899999999
Q ss_pred cccCC
Q 012929 133 CVPQG 137 (453)
Q Consensus 133 c~a~~ 137 (453)
|+...
T Consensus 356 C~~v~ 360 (400)
T PF04412_consen 356 CMVVS 360 (400)
T ss_pred cceec
Confidence 98653
No 279
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.05 E-value=1.2e+02 Score=26.30 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHh-CCCcEEEEEEEEeC-CCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 327 YTLSDFRTVVDTLIEL-VPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~-~pgi~v~~~~IvG~-PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+...+.+.++.+++. .+++ -+++|- +.-..+++.+..+.+++++++.++ -|||++.
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf------~~~~~~~ 124 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF------PPGTDPE 124 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHHHHHHHHcCCCEEE------CcCCCHH
Confidence 4567788889999988 2333 345554 334556777788889999987654 3566654
No 280
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=39.54 E-value=3.9e+02 Score=26.43 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-CceEEEEecCCcChhHH------HHHH
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH------LKEI 295 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~-~~~ir~~~~~p~~i~~~------l~~l 295 (453)
.+.|-+.+..+.+.|..-|.|-|++..+|+ .++.+.+..+... ..-+.|. .|++.-++. ---+
T Consensus 97 ~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~---------~~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~ 166 (307)
T TIGR01227 97 QHEIAQTAAALLADHRVPVILGGGHSIAYA---------TFAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPF 166 (307)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCcchhHHH---------HHHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHH
Confidence 345555566677788888888887776663 3334443322001 2233333 222211110 0113
Q ss_pred HHHHhCCC--CceeeecccCCCC--HHHHHhhcCC----CCHHHHHH-----HHHHHHHh---CCC--cEEEEEEE----
Q 012929 296 AEVLRHPC--VYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIEL---VPG--MQIATDII---- 353 (453)
Q Consensus 296 ~~l~~~~~--~~~~l~iglESgs--~~vLk~m~R~----~t~e~~~~-----~i~~lr~~---~pg--i~v~~~~I---- 353 (453)
..++.... ..+.+++|+++.+ ++-.+.+++. ++.+++.+ +.+.++.. ... +++-.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~ 246 (307)
T TIGR01227 167 RQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAH 246 (307)
T ss_pred HHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhh
Confidence 34443221 2368999999984 4444444332 23444433 23333332 122 34445555
Q ss_pred ---EeCC---CCCHHHHHHHHHHHHh-cCCCeEEEEecccCCC
Q 012929 354 ---CGFP---GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPG 389 (453)
Q Consensus 354 ---vG~P---gET~ed~~~tl~~i~~-l~~~~i~i~~~sp~pG 389 (453)
+|.| |=|..++.+.++.+.. .++-.+.+.-|.|...
T Consensus 247 aPgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 247 APGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 5666 5678888888887744 3566678888888754
No 281
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=39.29 E-value=1.3e+02 Score=27.23 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred ChhH-HHHHHHHHHHcCCeee---------CCCCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCEEEEccc
Q 012929 71 NQSD-SEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLVVAGCV 134 (453)
Q Consensus 71 N~~d-se~~~~~L~~~g~~~~---------~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~vVvgGc~ 134 (453)
|..+ .+.|+..|.. |.++. .+..++|.|+|-+.+........+...+++... .+++|++=+|.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4444 5566677765 66542 123458999996665443334455566554322 35666665554
No 282
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.94 E-value=1.2e+02 Score=27.04 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEe-----eccccc--chHHHHHHHHHHHhh--CCCCEEE
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-----TCTVKS--PSQSAMDTLIAKCKS--AKKPLVV 130 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viin-----TCtv~~--~a~~~~~~~i~~~~~--~~~~vVv 130 (453)
.+.+..+|+. -..+..+...|.. -....+|+|+|+ .+..+. ...+.+.++++++++ .+.+|++
T Consensus 40 ~~~~~n~g~~--G~t~~~~~~~l~~------~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKT--GATSADLLRQLAP------LPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecC--CcCHHHHHHHHHh------cccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4567777774 4445667777765 123578999883 222221 124456677788877 5678888
Q ss_pred Eccc
Q 012929 131 AGCV 134 (453)
Q Consensus 131 gGc~ 134 (453)
.+..
T Consensus 112 ~~~p 115 (191)
T cd01836 112 TAVP 115 (191)
T ss_pred ECCC
Confidence 7753
No 283
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.82 E-value=3.5e+02 Score=25.70 Aligned_cols=130 Identities=12% Similarity=0.201 Sum_probs=84.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
-....+.|..-++..-..|...+.+.. | ++|++.+... ..-.++++.++|..+.+..
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIAa--------d-----p~LV~~~~~~----s~lPICVSaVep~~f~~aV------ 78 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIAA--------D-----PELVKLAKSL----SNLPICVSAVEPELFVAAV------ 78 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEecC--------C-----HHHHHHHHHh----CCCCeEeecCCHHHHHHHH------
Confidence 344667777666665555776554432 1 5666655432 2245788888886554332
Q ss_pred HhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCe
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~ 378 (453)
.. +... +|=||=+.+=.-+|.++.+++++..+..|+..|++.++.++=--+|-+ +=.+....+.+++.|.
T Consensus 79 -~A--GAdl----iEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld---~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 79 -KA--GADL----IEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLD---QQVQLAEDLVKAGADI 148 (242)
T ss_pred -Hh--CCCE----EEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHH---HHHHHHHHHHHhCCcE
Confidence 21 2233 455677777778899999999999999999999999988876666532 2233444566778887
Q ss_pred EEE
Q 012929 379 VHI 381 (453)
Q Consensus 379 i~i 381 (453)
++.
T Consensus 149 IQT 151 (242)
T PF04481_consen 149 IQT 151 (242)
T ss_pred EEc
Confidence 664
No 284
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=38.79 E-value=47 Score=26.86 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEcc
Q 012929 76 EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (453)
+.+-..-.+.|.++++.+.+||++|+-.-+.-+. .. + .|+||++|+-
T Consensus 21 ~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd--~~-------l--~GKkv~i~d~ 67 (103)
T COG3925 21 TVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPND--SA-------L--NGKKVWIGDI 67 (103)
T ss_pred HHHHHHHHHCCCeeeCCCCcccEEEEeccccCCC--cc-------c--cCceEEEecH
Confidence 3444455678999999999999999965554432 11 1 4788998885
No 285
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=38.57 E-value=3.3e+02 Score=25.40 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+.++-++.+.+.|++++.++|-+....+.. .+ .++++++.+... ..+.++ -.+..+.+ +..+.. .+
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~--~n-~~~~~~i~~~~~----~pv~~~-ggi~~~~d----~~~~~~--~G 96 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGRE--PL-FELISNLAEECF----MPLTVG-GGIRSLED----AKKLLS--LG 96 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCC--CC-HHHHHHHHHhCC----CCEEEE-CCCCCHHH----HHHHHH--cC
Confidence 344445555678999999998765433322 22 577788876532 233333 23333322 333333 24
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC------------CCHHHHHHHHHHHH
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG------------ETDEDFNQTVNLIK 372 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg------------ET~ed~~~tl~~i~ 372 (453)
+..+.+|-.. ++ +.+.+.++++...+. .+.++.|+--|+++ ++..+..+.+..+.
T Consensus 97 ~~~vilg~~~-----l~------~~~~~~~~~~~~~~~--~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 97 ADKVSINTAA-----LE------NPDLIEEAARRFGSQ--CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred CCEEEEChhH-----hc------CHHHHHHHHHHcCCc--eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 5677777222 11 123333333222111 25667776554221 23444556667777
Q ss_pred hcCCCeEEEEeccc
Q 012929 373 EYKFPQVHISQFYP 386 (453)
Q Consensus 373 ~l~~~~i~i~~~sp 386 (453)
+.+.+.+.++..++
T Consensus 164 ~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 164 QLGAGEILLNSIDR 177 (232)
T ss_pred HcCCCEEEEeCCCc
Confidence 88899888887665
No 286
>PRK10812 putative DNAse; Provisional
Probab=38.49 E-value=1.6e+02 Score=28.61 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChh--HHHHHHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL--EHLKEIAEVL 299 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~--~~l~~l~~l~ 299 (453)
..++++++++ +.|+..+..++.+... +...+ ++.+..+ + .+..++ ++|.... ..++.+..++
T Consensus 21 d~~~vl~~a~---~~gv~~~~~~~~~~~~--------~~~~~-~l~~~~~--~-v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKAA---ARDVKFCLAVATTLPG--------YRHMR-DLVGERD--N-VVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHHH---HcCCCEEEEeCCCHHH--------HHHHH-HHHhhCC--C-eEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 5566666654 6799888877644322 23332 3334333 2 445666 7887652 3444555555
Q ss_pred hCCCCceee-ecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC-
Q 012929 300 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP- 377 (453)
Q Consensus 300 ~~~~~~~~l-~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~- 377 (453)
..+. +..| .+|+.-.-+. -.+....+-+...++.+++. +..+....- +...++++.+++.+..
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~r--------~a~~~~l~iL~~~~~~~ 149 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVHTR--------DARADTLAILREEKVTD 149 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEee--------CchHHHHHHHHhhcCCC
Confidence 5443 3455 6777643100 00111234466677777777 655444421 1223566666654322
Q ss_pred -eEEEEec
Q 012929 378 -QVHISQF 384 (453)
Q Consensus 378 -~i~i~~~ 384 (453)
.+-++.|
T Consensus 150 ~~~v~H~f 157 (265)
T PRK10812 150 CGGVLHCF 157 (265)
T ss_pred CCEEEEee
Confidence 2335555
No 287
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=38.27 E-value=1.1e+02 Score=31.48 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~ 387 (453)
+..+.|.+.+..+++.+|++.+-+.++- +.+.+++.+.++.+++.+.+.+-++..+|-
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~---~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIME---EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccC---CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4578888888888877777666666552 258999999999999998999999888875
No 288
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=37.56 E-value=4.1e+02 Score=26.14 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=73.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCC---HHHHHHHHHHhCCCCCCceEEEEecCCcChhHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---~~~---l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~ 291 (453)
-++.+++.++++++.+.+.|..-|-+-++-+.. |.+. ... +...++.+.+.. ...+.+.+.+|..+
T Consensus 32 g~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-g~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~~~va--- 103 (282)
T PRK11613 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSKPEVI--- 103 (282)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCCHHHH---
Confidence 344689999999999999999888776544322 3221 112 333445554321 23456665444321
Q ss_pred HHHHHHHHhCC-CCceeeecccCCCCHHHHHhhcC-------------------CCC--------HHHHHHHHHHHHHhC
Q 012929 292 LKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNR-------------------EYT--------LSDFRTVVDTLIELV 343 (453)
Q Consensus 292 l~~l~~l~~~~-~~~~~l~iglESgs~~vLk~m~R-------------------~~t--------~e~~~~~i~~lr~~~ 343 (453)
.+.++.+ .+.+-+. |+. ++++++.+.+ ... .+.+.+.++.+.++
T Consensus 104 ----~~AL~~GadiINDI~-g~~--d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 175 (282)
T PRK11613 104 ----RESAKAGAHIINDIR-SLS--EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA- 175 (282)
T ss_pred ----HHHHHcCCCEEEECC-CCC--CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc-
Confidence 1112211 1222221 332 3343332211 000 14556777888888
Q ss_pred CCc---EEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 344 PGM---QIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 344 pgi---~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
|+ .+-.|=-+|| +.|.++-.+.++-+..+
T Consensus 176 -GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 176 -GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred -CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 87 6778888898 66666555555544443
No 289
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=37.39 E-value=30 Score=38.26 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=46.0
Q ss_pred ceEEEEeeCCC-----cChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHH
Q 012929 59 ETIYMKTFGCS-----HNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIA 119 (453)
Q Consensus 59 ~~~~i~t~GC~-----~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~ 119 (453)
-||-|-|.-=. +|.+| -.|..+||++++. .+.||+|.++. ...++-..+...++
T Consensus 408 GkiviATVKGDVHDIGKNiV~-----vvLs~NgyeVvdLGv~vp~~~Ile~a~~~~~D~IglSG--Lit~Sl~~M~~v~~ 480 (842)
T COG1410 408 GKIVIATVKGDVHDIGKNIVD-----VVLSCNGYEVVDLGVMVPAEKILEAAEEEKADIIGLSG--LITPSLDEMKEVLE 480 (842)
T ss_pred CcEEEEEecccHhhhccchhh-----eeeecCCeEeeeccCcCcHHHHHHHHHHhccceeeecc--cccccHHHHHHHHH
Confidence 35555554332 34444 5677778887765 46799999953 33444456777788
Q ss_pred HHhhCC-CCEEEEccccC
Q 012929 120 KCKSAK-KPLVVAGCVPQ 136 (453)
Q Consensus 120 ~~~~~~-~~vVvgGc~a~ 136 (453)
.+++.+ .+|++||-.-+
T Consensus 481 em~r~~~iPvliGGAt~s 498 (842)
T COG1410 481 EMNRGGFIPVLIGGATTS 498 (842)
T ss_pred HhhhcCccceeecccccc
Confidence 887754 48999996443
No 290
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.35 E-value=4.4e+02 Score=26.41 Aligned_cols=139 Identities=15% Similarity=0.204 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeec--CCCCCCCCcC-----CCH-HHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSE--DTGAYGRDIG-----VNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~--d~~~yg~d~~-----~~l-~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
-|.++-++-++.+.+.|++.+-++-- |....|.... +++ .+|++++.+ + + ..+-++-++...+.+
T Consensus 105 ~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~-L---g-IiiDlSH~s~kt~~D-- 177 (313)
T COG2355 105 EPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNE-L---G-IIIDLSHLSDKTFWD-- 177 (313)
T ss_pred ccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHh-c---C-CEEEecccCCccHHH--
Confidence 35666678899999999999877743 3333222111 222 456666644 3 3 234454444333332
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC----C--CHHHHHH
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG----E--TDEDFNQ 366 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg----E--T~ed~~~ 366 (453)
.+.+...|.+ .=+.|.+.|..-.|+.+-++ ++.+++. |=.|...++..|-. . |.+|+.+
T Consensus 178 --vl~~s~~Pvi-------aSHSN~~al~~h~RNl~D~q----lkaI~~~--gGvIgv~~~~~fl~~~~~~~atldd~v~ 242 (313)
T COG2355 178 --VLDLSKAPVV-------ASHSNARALVDHPRNLSDEQ----LKAIAET--GGVIGVNFIPAFLRPGGAARATLDDLVR 242 (313)
T ss_pred --HHhccCCceE-------EecCCchhccCCCCCCCHHH----HHHHHhc--CCEEEEEeehhhccCCCCCCCCHHHHHH
Confidence 3333343333 23567888888888887444 5566677 76777777777744 3 8999999
Q ss_pred HHHHHHhc-CCCeEEE
Q 012929 367 TVNLIKEY-KFPQVHI 381 (453)
Q Consensus 367 tl~~i~~l-~~~~i~i 381 (453)
.++.+.++ +.+++.+
T Consensus 243 hI~h~v~~~G~dhVgl 258 (313)
T COG2355 243 HIDHFVELVGIDHVGL 258 (313)
T ss_pred HHHHHHHhcCcceeEe
Confidence 99977655 7888877
No 291
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.85 E-value=1.5e+02 Score=26.68 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
+.+...++.+.+++.+||+.+....- | .-++++-++.++.+.+.+++.+.+..
T Consensus 57 ~~~~~~~~~~~l~~~yP~l~ivg~~~-g--~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 57 SEEVLEKAAANLRRRYPGLRIVGYHH-G--YFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC-C--CCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 34556677888999999987653322 1 12777888899999999998776654
No 292
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.55 E-value=6.3e+02 Score=27.67 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCc---eEE----EEec-CCcChhH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGST---MLR----IGMT-NPPFILE 290 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg-~d~~~~l~~Ll~~l~~~i~~~~~~---~ir----~~~~-~p~~i~~ 290 (453)
..+.++.+.-+..+.+.|+..|.+.|.-++.-. +-...+-.+.++.+.+..+ +.. ++| +++. .|+++.+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~--~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP--NTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC--CCEEEEEEccccccccccCchhhHH
Confidence 567888888888888889999988753322210 0011234677777766443 211 112 1111 2444333
Q ss_pred HHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCCCCCHHHHHHHHH
Q 012929 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVN 369 (453)
Q Consensus 291 ~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~PgET~ed~~~tl~ 369 (453)
.. +..... .++..+.+.. +.|+. +.+...++.++++ |..+...+-+ +-|--|.+.+.+.++
T Consensus 95 ~~--v~~a~~--~Gvd~irif~-~lnd~-----------~n~~~~i~~ak~~--G~~v~~~i~~t~~p~~~~~~~~~~~~ 156 (582)
T TIGR01108 95 RF--VKKAVE--NGMDVFRIFD-ALNDP-----------RNLQAAIQAAKKH--GAHAQGTISYTTSPVHTLETYLDLAE 156 (582)
T ss_pred HH--HHHHHH--CCCCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCEEEEEEEeccCCCCCHHHHHHHHH
Confidence 32 333333 2344555432 33431 4577788888888 8776665432 245567788888888
Q ss_pred HHHhcCCCeEEE
Q 012929 370 LIKEYKFPQVHI 381 (453)
Q Consensus 370 ~i~~l~~~~i~i 381 (453)
.+.+++.+.+.+
T Consensus 157 ~~~~~Gad~I~i 168 (582)
T TIGR01108 157 ELLEMGVDSICI 168 (582)
T ss_pred HHHHcCCCEEEE
Confidence 888888776544
No 293
>PRK07308 flavodoxin; Validated
Probab=35.22 E-value=2.6e+02 Score=23.99 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=39.4
Q ss_pred CceEEEEeeCCCcChhH-HHHHHHHHHHcCCeee--C-------CCCCCcEEEEeeccccc-chHHHHHHHHHHHhhC--
Q 012929 58 TETIYMKTFGCSHNQSD-SEYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCKSA-- 124 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~d-se~~~~~L~~~g~~~~--~-------~~~~AD~viinTCtv~~-~a~~~~~~~i~~~~~~-- 124 (453)
|+++.|+-.--.-|... .+.|+..|.+.|+++. + +..++|+|+|-|.|.-. .....+...++.++..
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l 80 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDL 80 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCC
Confidence 34555543222233333 4556677777786542 1 12467888886666542 2223455555555432
Q ss_pred -CCCEEEEccc
Q 012929 125 -KKPLVVAGCV 134 (453)
Q Consensus 125 -~~~vVvgGc~ 134 (453)
|+++.|-|..
T Consensus 81 ~~k~~~vfG~G 91 (146)
T PRK07308 81 SGKIYGVVGSG 91 (146)
T ss_pred CCCEEEEEeeC
Confidence 4555555653
No 294
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=35.02 E-value=3.5e+02 Score=24.54 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=72.1
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.|..++++.++-++.+.+.|++-+.+.-.+ ..-.+.++.+.+..+ ...+..+.+.. .+.+ ..
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~---~~~iGag~v~~---~~~~---~~ 71 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFP---EALIGAGTVLT---PEQA---DA 71 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCC---CCEEEEEeCCC---HHHH---HH
Confidence 456679999999999999999998886421 123567888876543 22233333321 2222 22
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
... .+..++|.|-. + .+.++..++. ++ .+|.|.- |.++..+. .+.+.+
T Consensus 72 a~~--~Ga~~i~~p~~--~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A----~~~Gad 119 (190)
T cd00452 72 AIA--AGAQFIVSPGL--D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQA----LELGAD 119 (190)
T ss_pred HHH--cCCCEEEcCCC--C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHH----HHCCCC
Confidence 222 34567776522 1 2455556665 54 3466764 66665543 457999
Q ss_pred eEEEEecccC
Q 012929 378 QVHISQFYPR 387 (453)
Q Consensus 378 ~i~i~~~sp~ 387 (453)
.+.+|+.++.
T Consensus 120 ~i~~~p~~~~ 129 (190)
T cd00452 120 IVKLFPAEAV 129 (190)
T ss_pred EEEEcCCccc
Confidence 9998876664
No 295
>PRK05568 flavodoxin; Provisional
Probab=34.78 E-value=1.1e+02 Score=25.97 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeeeC---------CCCCCcEEEEeecccccch--HHHHHHHHHHHhh--CCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKSPS--QSAMDTLIAKCKS--AKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~---------~~~~AD~viinTCtv~~~a--~~~~~~~i~~~~~--~~~~vVvgGc~a~~ 137 (453)
+.++..|.+.|+++.- +..++|.+++-|.+.-... ...+...++++.. +++++++-|++.+.
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~~ 94 (142)
T PRK05568 20 NLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWG 94 (142)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCCC
Confidence 4455555566765421 2357899999777653321 1234555555432 46777777776654
No 296
>PRK06703 flavodoxin; Provisional
Probab=34.28 E-value=1e+02 Score=26.77 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCeee--C-------CCCCCcEEEEeecccccc-hHHHHHHHHHHHh---hCCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSP-SQSAMDTLIAKCK---SAKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~--~-------~~~~AD~viinTCtv~~~-a~~~~~~~i~~~~---~~~~~vVvgGc~a~~ 137 (453)
+.++..|...|+++. + +..++|+++|-|.|.-.. ....+...+..++ -.++++.+=|+..+.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~ 94 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA 94 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC
Confidence 344455666677643 1 234678888866554321 1223444444443 235666666665544
No 297
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.17 E-value=1.7e+02 Score=29.54 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
..+++.+++.++.+.+.|+..|.+.| .. |.-.+..+.+++..+.+.++
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~D-T~---G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVD-SA---GAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcc-CC---CCCCHHHHHHHHHHHHHhCC
Confidence 35889999999999999999999886 33 33334577888888877653
No 298
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=34.13 E-value=5.1e+02 Score=26.23 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=80.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CCceEEE
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 280 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~------------------~~~~ir~ 280 (453)
...+++..+++|++|.+.|..-+.++-++.- -++.+.+|.+.++-+ +...+|
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e---------~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~R- 100 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDME---------AAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVR- 100 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCHH---------HHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEE-
Confidence 4558899999999999999888777653321 134444444332110 222333
Q ss_pred EecCCcChh--HHHHHHHHHHhCCCCceeeecccCCCC--HHHHHhhcCCCCHHH----HHHHHHHHHHhCCCcEEEEEE
Q 012929 281 GMTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYTLSD----FRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 281 ~~~~p~~i~--~~l~~l~~l~~~~~~~~~l~iglESgs--~~vLk~m~R~~t~e~----~~~~i~~lr~~~pgi~v~~~~ 352 (453)
+||.++- +.+.++.+.++..+. -+-||+-+|| .++|+++..+ +.|. ..+-++.+-+. |+. +|
T Consensus 101 --INPGNig~~~~v~~vVe~Ak~~g~--piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i 170 (361)
T COG0821 101 --INPGNIGFKDRVREVVEAAKDKGI--PIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DI 170 (361)
T ss_pred --ECCcccCcHHHHHHHHHHHHHcCC--CEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cE
Confidence 4666543 234455555554333 4667777776 6677777655 4433 33344455555 444 88
Q ss_pred EEeCCCCCHHHHHHHHHHHHhc
Q 012929 353 ICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l 374 (453)
++-.-.-+..+..+..+.+.+.
T Consensus 171 ~iS~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 171 KVSVKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEEEEcCCHHHHHHHHHHHHHh
Confidence 8888777777777777766543
No 299
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.88 E-value=1.8e+02 Score=29.35 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~ 281 (453)
.+++.+++.++.+.+.|+..|.+.| .+ |.-.+..+.++++.+.+.++ +...+.+.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~---G~~~P~~v~~~v~~l~~~l~--~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SA---GALLPEDVRDRVRALRAALK--PDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CC---CCCCHHHHHHHHHHHHHhcC--CCCeEEEE
Confidence 4889999999999999999999876 33 33334577888888877653 23345554
No 300
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.77 E-value=2.7e+02 Score=26.26 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~--l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
+.+.-.+-+|++.+.+.|+..+. +.|.+|-.. ...+ ++.++.+.+.... -...+.+...+|.... ..
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-~tfg---~~~i~~i~~~~~~-~~~dvHLMv~~p~~~i------~~ 76 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-LTFG---APICKALRDYGIT-APIDVHLMVKPVDRII------PD 76 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-cccC---HHHHHHHHHhCCC-CCEEEEeccCCHHHHH------HH
Confidence 44667888999999998877655 444333210 0112 4567777553110 1234455444554322 22
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
++. .++.++.+-+|+. .+..+.++.+|+. |+... +.+. |+-..+.+...+ .. +|
T Consensus 77 ~~~--~gad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~G--laln-P~Tp~~~i~~~l---~~--~D 130 (220)
T PRK08883 77 FAK--AGASMITFHVEAS--------------EHVDRTLQLIKEH--GCQAG--VVLN-PATPLHHLEYIM---DK--VD 130 (220)
T ss_pred HHH--hCCCEEEEcccCc--------------ccHHHHHHHHHHc--CCcEE--EEeC-CCCCHHHHHHHH---Hh--CC
Confidence 333 3456777778863 2366788899998 86543 3333 665556554433 33 34
Q ss_pred eEEEEecccCCCCHhH
Q 012929 378 QVHISQFYPRPGIQFL 393 (453)
Q Consensus 378 ~i~i~~~sp~pGT~~~ 393 (453)
.+-+ ++-.||+.-.
T Consensus 131 ~vlv--MtV~PGfgGq 144 (220)
T PRK08883 131 LILL--MSVNPGFGGQ 144 (220)
T ss_pred eEEE--EEecCCCCCc
Confidence 4444 4666776553
No 301
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=33.58 E-value=2.2e+02 Score=26.47 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=39.5
Q ss_pred eeeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHH----HHHHHHHHHhc
Q 012929 306 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 374 (453)
Q Consensus 306 ~~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed----~~~tl~~i~~l 374 (453)
..+++-+.+|. .|+| |.+.+++.+.++.+.+. |++.+.+-+..+--.++.+. ++..++++.++
T Consensus 117 ~~v~lkvdtG~-----~~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 117 LDVLVQVNIGG-----EESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred CcEEEEEecCC-----CCCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 35778888872 1578 67888888888888664 67766654444433455455 44455555554
No 302
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=33.45 E-value=51 Score=31.99 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=24.8
Q ss_pred CCcChhHHHHHH-HHHHHcCCeeeCCCCCCcEEEEe
Q 012929 68 CSHNQSDSEYMA-GQLSAFGYALTDNSEEADIWLIN 102 (453)
Q Consensus 68 C~~N~~dse~~~-~~L~~~g~~~~~~~~~AD~viin 102 (453)
|...++.+|... ..|.+.. -.|.++++||+++|=
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP 66 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVP 66 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEE
Confidence 777788887554 4444444 678899999999884
No 303
>PRK06242 flavodoxin; Provisional
Probab=33.03 E-value=54 Score=28.29 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=30.0
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhh-CCCCEEEEccccCCc
Q 012929 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKS-AKKPLVVAGCVPQGS 138 (453)
Q Consensus 93 ~~~AD~viinTCtv~~~a~~~~~~~i~~~~~-~~~~vVvgGc~a~~~ 138 (453)
..++|.|++-|.+........+...++++.. .++++++=|.+.+..
T Consensus 41 ~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~ 87 (150)
T PRK06242 41 LSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLPF 87 (150)
T ss_pred HhHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCCCc
Confidence 3578999997765544444456777776644 567777767666543
No 304
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=32.84 E-value=1.1e+02 Score=31.66 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCC---CCCCC-cC---CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTG---AYGRD-IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~---~yg~d-~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
--+.++|.+.-+.+.+.|.+--++-+.+.. -.|.. .. .++.+.|+.+.+. |+.-++..|+-.-.....-
T Consensus 39 vW~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~----GI~vicYNFMPv~dW~RT~ 114 (394)
T TIGR00695 39 VWEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQC----GIKTVCYNFMPVLDWTRTD 114 (394)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHc----CCCEEEEEecccccccccc
Confidence 346677766666666678664433221111 01111 11 2456777777663 7777777764322111100
Q ss_pred HHHHHHHhCCCCc-eeeecccCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHhCCC--cEEEEEEEEeCCC
Q 012929 293 KEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMN--REYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG 358 (453)
Q Consensus 293 ~~l~~l~~~~~~~-~~l~iglESgs~~vLk~m~--R~~t~e~~~~~i~~lr~~~pg--i~v~~~~IvG~Pg 358 (453)
+..-...+..+ .+=...++..+..+|++-+ ..|+.+...++.+.+....+. ..+..++|.|+||
T Consensus 115 --l~~~~~~Ga~al~fd~~~~~~~d~~~l~r~~~~~~~~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpG 183 (394)
T TIGR00695 115 --LFYPLPDGSKALRFDKIKFAAFELHILKRPDAEKTYNQEELIRAVEEASDMSEQDIAQLTRNIIAGLPG 183 (394)
T ss_pred --CcccCCCCceeEeeehhhhhccChHhhhcccccccCCHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCC
Confidence 11111112211 1222345556666676554 467888888888888865332 4588899999999
No 305
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.74 E-value=4.2e+02 Score=24.82 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+.++-++.+.+.|++++.+.+-+...-+. ....++++++.+... ..+.++ -....+ +++..+.. .+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~-GGi~~~----~~~~~~~~--~G 98 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLG-GGIRSA----EDAASLLD--LG 98 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEc-CCcCCH----HHHHHHHH--cC
Confidence 34555666777899999999765432222 234677777776532 223332 111111 12333333 35
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE------EeCCCCCHHHHHHHHHHHHhcCCCe
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQ 378 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I------vG~PgET~ed~~~tl~~i~~l~~~~ 378 (453)
+..+++|-....+ .+.+.++.+.+... .+.++.|+. -|.-.++..+..+..+.+.+.+++.
T Consensus 99 a~~v~iGs~~~~~-----------~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~ 165 (241)
T PRK13585 99 VDRVILGTAAVEN-----------PEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGS 165 (241)
T ss_pred CCEEEEChHHhhC-----------hHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCE
Confidence 6778887654321 22233333332111 244454532 2433333335666677778889998
Q ss_pred EEEEecc
Q 012929 379 VHISQFY 385 (453)
Q Consensus 379 i~i~~~s 385 (453)
+.+....
T Consensus 166 i~~~~~~ 172 (241)
T PRK13585 166 ILFTNVD 172 (241)
T ss_pred EEEEeec
Confidence 8877664
No 306
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.69 E-value=4.4e+02 Score=25.05 Aligned_cols=44 Identities=7% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 330 e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
+.+.++.+.+.+. |+.+..--+-.+.+.-..+..+.+++++.+.
T Consensus 129 ~~l~~l~~~a~~~--gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 129 ENLSELCEYAENI--GMDLILEPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHHHHHHHHHHHc--CCEEEEecCCCCcccccCCHHHHHHHHHHcC
Confidence 4566666677777 8877766542221111223445666666665
No 307
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.63 E-value=2.3e+02 Score=25.28 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=47.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~-------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++|++. ||..+..=.+++...|...|..+.- ...+-|++++=| +...+ ..+.+.++.+++.|.+|| +
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS--~sG~t-~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAIS--GSGET-SSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEc--CCCCc-HHHHHHHHHHHHCCCeEEEE
Confidence 566665 5556677778888888877865432 123457776633 33332 346778889999998765 7
Q ss_pred EccccCCc
Q 012929 131 AGCVPQGS 138 (453)
Q Consensus 131 gGc~a~~~ 138 (453)
++...+..
T Consensus 109 T~~~~s~l 116 (179)
T cd05005 109 TSNPDSPL 116 (179)
T ss_pred ECCCCCch
Confidence 77654433
No 308
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.30 E-value=2.1e+02 Score=26.51 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCC--ee--eCC---CCCCcEEEEee
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--AL--TDN---SEEADIWLINT 103 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~--~~--~~~---~~~AD~viinT 103 (453)
||||.|+-+||. +-..+...|++.|+ ++ +.+ .+++|.+||-.
T Consensus 1 ~~~~~iid~g~g----n~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MMTVAIIDYGSG----NLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPG 49 (209)
T ss_pred CCeEEEEECCCC----hHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECC
Confidence 689999999995 44556788889998 33 333 34789999943
No 309
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.20 E-value=2.2e+02 Score=27.74 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=39.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
|.++.|..-..+....=.+.+...|++.|+++..+..++|++++= -.+-.+.+.++++..
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~l------GGDGT~L~a~~~~~~ 61 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSI------GGDGTFLQAVRKTGF 61 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEE------CCcHHHHHHHHHhcc
Confidence 457778777766333334556777888999988766778988772 234456666666543
No 310
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=31.95 E-value=2.5e+02 Score=24.35 Aligned_cols=66 Identities=12% Similarity=0.264 Sum_probs=37.9
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc--------chHHHHHHHHHHHhhCCCCEEEE
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--------PSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~--------~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.+.++..|+.=.... .+...|... .. ...+|+|+|. ++.-+ ...+.+.++++++++.+++|++.
T Consensus 36 ~~~v~n~g~~G~~~~--~~~~~l~~~----~~-~~~pd~v~i~-~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 36 DVTVINAGVSGDTTA--GGLARLPAL----LA-QHKPDLVILE-LGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred CeEEEecCcCCcccH--HHHHHHHHH----HH-hcCCCEEEEe-ccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 467778887654433 233333321 01 1367999883 44321 12344567778888888888876
Q ss_pred cc
Q 012929 132 GC 133 (453)
Q Consensus 132 Gc 133 (453)
+.
T Consensus 108 ~~ 109 (177)
T cd01822 108 GM 109 (177)
T ss_pred ec
Confidence 64
No 311
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=31.73 E-value=1.3e+02 Score=24.28 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=41.1
Q ss_pred EEEeecccccchHHHHHHHHH-HHhhCCC--CEEEEccccCC--chhhhc-CCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 99 WLINTCTVKSPSQSAMDTLIA-KCKSAKK--PLVVAGCVPQG--SRDLKE-LEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 99 viinTCtv~~~a~~~~~~~i~-~~~~~~~--~vVvgGc~a~~--~~e~~~-~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
|-..||.+-..|. ++++.++ .++++|. .|+-+||+.-- .|-..- .+.. .+.+.-..+.++++++..+.
T Consensus 5 Vc~gT~ciAaGA~-~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 5 VPRDAAALALGAD-EVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred EeCChhhhhhCHH-HHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhh
Confidence 4456777766554 4555544 5666664 67789998753 342222 2434 45566566788998887554
No 312
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.71 E-value=2.2e+02 Score=29.04 Aligned_cols=134 Identities=24% Similarity=0.310 Sum_probs=73.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-----CCCC-----------------CCc
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-----LPPD-----------------GST 276 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~-----i~~~-----------------~~~ 276 (453)
..++.+..+++|.+|.+.|..-+.+.-+|.- -++-+.+|.+. .+.+ ...
T Consensus 26 ~t~Dv~atv~QI~~L~~aGceivRvavp~~~---------~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~ 96 (359)
T PF04551_consen 26 DTRDVEATVAQIKRLEEAGCEIVRVAVPDME---------AAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVD 96 (359)
T ss_dssp -TT-HHHHHHHHHHHHHCT-SEEEEEE-SHH---------HHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-S
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCCHH---------HHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhC
Confidence 4668889999999999999888887654321 12233333322 1000 112
Q ss_pred eEEEEecCCcCh-----------hHHHHHHHHHHhCCCCceeeecccCCCC--HHHHHhhcCCCC----HHHHHHHHHHH
Q 012929 277 MLRIGMTNPPFI-----------LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYT----LSDFRTVVDTL 339 (453)
Q Consensus 277 ~ir~~~~~p~~i-----------~~~l~~l~~l~~~~~~~~~l~iglESgs--~~vLk~m~R~~t----~e~~~~~i~~l 339 (453)
.+| +||.++ .+.+.++.+.++..+. -+-||+-||| .++++++ +.+ .+...+-++.+
T Consensus 97 kiR---INPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i--pIRIGvN~GSL~~~~~~ky--~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 97 KIR---INPGNIVDEFQEELGSIREKVKEVVEAAKERGI--PIRIGVNSGSLEKDILEKY--GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp EEE---E-TTTSS----SS-SS-HHHHHHHHHHHHHHT---EEEEEEEGGGS-HHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred eEE---ECCCcccccccccccchHHHHHHHHHHHHHCCC--CEEEecccccCcHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 344 467777 4555566655554444 4667777765 6677666 323 34455666677
Q ss_pred HHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q 012929 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373 (453)
Q Consensus 340 r~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~ 373 (453)
.+. |+ .++++-+-.-+.....+..+++.+
T Consensus 170 e~~--~f---~~iviSlKsSdv~~~i~ayr~la~ 198 (359)
T PF04551_consen 170 EEL--GF---DDIVISLKSSDVPETIEAYRLLAE 198 (359)
T ss_dssp HHC--T----GGEEEEEEBSSHHHHHHHHHHHHH
T ss_pred HHC--CC---CcEEEEEEeCChHHHHHHHHHHHH
Confidence 776 54 466666665565555555554443
No 313
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.54 E-value=1.9e+02 Score=24.55 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEeC-------CCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 330 SDFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 330 e~~~~~i~~lr~~~pgi~v~~~~IvG~-------PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
+.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.+..++-+.++...||-.
T Consensus 17 ~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e 85 (127)
T cd03412 17 KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE 85 (127)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH
Confidence 345555566666666666665555200 01122344556666666677777777777777743
No 314
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=31.46 E-value=1.7e+02 Score=25.54 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=46.5
Q ss_pred ceEEEEeeCCCcC-hhHHHHHHHHHHHcCCeeeCC---------------------CCCCcEEEEeecccccchHHHHHH
Q 012929 59 ETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDN---------------------SEEADIWLINTCTVKSPSQSAMDT 116 (453)
Q Consensus 59 ~~~~i~t~GC~~N-~~dse~~~~~L~~~g~~~~~~---------------------~~~AD~viinTCtv~~~a~~~~~~ 116 (453)
++|+++ |++-| .-+|-++...|.+.||++.+- ++.-|+|-| |+.+ +.+.+
T Consensus 17 K~IAvV--G~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdv----FR~~--e~~~~ 88 (140)
T COG1832 17 KTIAVV--GASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDV----FRRS--EAAPE 88 (140)
T ss_pred ceEEEE--ecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEE----ecCh--hhhHH
Confidence 455554 66655 346777888899999998653 456677777 5654 35677
Q ss_pred HHHHHhhCCCCEEEEccc
Q 012929 117 LIAKCKSAKKPLVVAGCV 134 (453)
Q Consensus 117 ~i~~~~~~~~~vVvgGc~ 134 (453)
+++++-+.+++++..=..
T Consensus 89 i~~eal~~~~kv~W~QlG 106 (140)
T COG1832 89 VAREALEKGAKVVWLQLG 106 (140)
T ss_pred HHHHHHhhCCCeEEEecC
Confidence 788877778888765433
No 315
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=30.71 E-value=5.8e+02 Score=27.98 Aligned_cols=123 Identities=11% Similarity=0.073 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHh
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (453)
.+++.+++-++.+.+.|+..|.|-| .. |.-.+....+|++++.+.++ ..+.+..-+-..+.- .......
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D-t~---G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gla~--An~laAv- 219 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD-MA---GLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGLAP--MTYLKAV- 219 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-cC---CCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCcHH--HHHHHHH-
Confidence 5899999999999999999999876 22 33334567888888877642 234444222222211 1122222
Q ss_pred CCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 301 ~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
..++.+++..+-. |..+.+.-....++..++.. |.. ++-..+.+.+.-+++.++
T Consensus 220 -~aGad~vD~ai~g--------~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~ 273 (592)
T PRK09282 220 -EAGVDIIDTAISP--------LAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREV 273 (592)
T ss_pred -HhCCCEEEeeccc--------cCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHH
Confidence 3567788777764 44555555566666666654 432 234456666666666555
No 316
>PRK06756 flavodoxin; Provisional
Probab=30.63 E-value=3.5e+02 Score=23.21 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=41.0
Q ss_pred CceEEEEeeCCCcChhH-HHHHHHHHHHcCCeee--C---C-----CCCCcEEEEeecccc-cchHHHHHHHHHHHhh--
Q 012929 58 TETIYMKTFGCSHNQSD-SEYMAGQLSAFGYALT--D---N-----SEEADIWLINTCTVK-SPSQSAMDTLIAKCKS-- 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~d-se~~~~~L~~~g~~~~--~---~-----~~~AD~viinTCtv~-~~a~~~~~~~i~~~~~-- 123 (453)
|+|+.|+-.-=.=|... .+.|+..|.+.|.++. + . ..++|.|++-|.|.- ......+...++.++.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~ 80 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSID 80 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC
Confidence 45555553322223322 3566777777787642 1 1 135799999765542 1122235666655532
Q ss_pred -CCCCEEEEccccC
Q 012929 124 -AKKPLVVAGCVPQ 136 (453)
Q Consensus 124 -~~~~vVvgGc~a~ 136 (453)
+|+++.+=|...+
T Consensus 81 l~~k~~~~fgt~~~ 94 (148)
T PRK06756 81 LTGKKAAVFGSCDS 94 (148)
T ss_pred CCCCEEEEEeCCCC
Confidence 3566666555433
No 317
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=30.53 E-value=4.8e+02 Score=27.96 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCC-
Q 012929 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP- 302 (453)
Q Consensus 224 e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~- 302 (453)
+.|+++++++.+.|..-|.+-+.-+ .+....+...++.+.+.. ...+.+.+.+|..+ .+.++.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~----~~pISIDT~~~~v~-------eaAL~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DDDPDVVKEKVKTALDAL----DSPVIADTPTLDEL-------YEALKAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhC----CCcEEEeCCCHHHH-------HHHHHcCC
Confidence 8899999999999998776644221 111123556666665431 24566666555322 2222221
Q ss_pred CCceeeecccCCCC-HHHHHhhcC------------CCCHHHHHHHHHHHHHhCCCc-EEEEEEEEeCCCCCHHHHHHHH
Q 012929 303 CVYSFLHVPVQSGS-DAVLSAMNR------------EYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTV 368 (453)
Q Consensus 303 ~~~~~l~iglESgs-~~vLk~m~R------------~~t~e~~~~~i~~lr~~~pgi-~v~~~~IvG~PgET~ed~~~tl 368 (453)
.+.+ .+..++ ++++..+.+ ....+.+.+.++.++++ |+ .+..|=++|+++. .+.+++
T Consensus 230 diIN----sVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL 300 (499)
T TIGR00284 230 SGVI----MPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESI 300 (499)
T ss_pred CEEE----ECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHH
Confidence 1212 221111 233221111 22347788999999999 98 7888999997432 356666
Q ss_pred HHHH
Q 012929 369 NLIK 372 (453)
Q Consensus 369 ~~i~ 372 (453)
+.++
T Consensus 301 ~~l~ 304 (499)
T TIGR00284 301 IRFR 304 (499)
T ss_pred HHHH
Confidence 6555
No 318
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=30.36 E-value=1.6e+02 Score=28.29 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i 381 (453)
.+.+++...++.+.+..+...+..|+=.|+ |++.++..++..-+.+.+.+-+++
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEE
Confidence 578888888888888766677888888888 557677777777666677766665
No 319
>PRK05474 xylose isomerase; Provisional
Probab=29.81 E-value=3.9e+02 Score=27.98 Aligned_cols=153 Identities=12% Similarity=0.166 Sum_probs=76.4
Q ss_pred HHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEEE---ecCCcChh-------HHH-------
Q 012929 233 VIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIG---MTNPPFIL-------EHL------- 292 (453)
Q Consensus 233 l~~~G~~eI~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~---~~~p~~i~-------~~l------- 292 (453)
+.+.|+..+.|.|.|+...|.... .+|.++++.+.+.....|+.-++.. +++|.... +..
T Consensus 88 ~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~Vra~A~~q 167 (437)
T PRK05474 88 FTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQ 167 (437)
T ss_pred HHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHHHHHHHHH
Confidence 566799999999999988876532 2455555555443322233222111 12222211 111
Q ss_pred --HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCC-----HHHH
Q 012929 293 --KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGET-----DEDF 364 (453)
Q Consensus 293 --~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET-----~ed~ 364 (453)
..+....+.++-.-.++.|-|-..-..-..|++ -.+.+.+.++.+.++.|++-....|.+=. |.|- .-|.
T Consensus 168 vk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~--e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hqyd~d~ 245 (437)
T PRK05474 168 VKTALDATKRLGGENYVFWGGREGYETLLNTDLKR--EREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQYDYDA 245 (437)
T ss_pred HHHHHHHHHHhCCCeEEECCCcccccchhhcCHHH--HHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCccccccH
Confidence 111111112222123344444333222234443 23667777777777766664444444443 4443 2466
Q ss_pred HHHHHHHHhcCCCeEEEEecccCCC
Q 012929 365 NQTVNLIKEYKFPQVHISQFYPRPG 389 (453)
Q Consensus 365 ~~tl~~i~~l~~~~i~i~~~sp~pG 389 (453)
.-++-|+++++.+. .+-+.|..+
T Consensus 246 at~l~fl~~~gl~~--~~gvNiE~~ 268 (437)
T PRK05474 246 ATVYGFLKQYGLEK--EFKLNIEAN 268 (437)
T ss_pred HHHHHHHHHhCCcc--ccccchhhh
Confidence 77888899888763 334444443
No 320
>PRK10494 hypothetical protein; Provisional
Probab=29.60 E-value=1.3e+02 Score=29.07 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccc------------hHHHHHHHHHHHhh-CCCCEEEEccc
Q 012929 74 DSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP------------SQSAMDTLIAKCKS-AKKPLVVAGCV 134 (453)
Q Consensus 74 dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~------------a~~~~~~~i~~~~~-~~~~vVvgGc~ 134 (453)
=+..+...|+. .|...+....+|.|||=+++.... +-.++.+.++.+++ ++.+||++|=.
T Consensus 58 ~~~~Ll~~LE~-~y~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~l~~~~~~Rl~~a~~L~r~~~~~~ii~SGg~ 130 (259)
T PRK10494 58 VADRLLRPIES-RYPTWNGSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLTEGIRLWRANPGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHhc-ccCCCCCCCCCCEEEEcCCCcCCCCCCCCcHhHhhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 45566677764 455434456789888877765421 11355555666665 35678877743
No 321
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.46 E-value=5.4e+02 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=19.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 012929 319 VLSAMNREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 319 vLk~m~R~~t~e~~~~~i~~lr~~~pg 345 (453)
.+++++.++|.++..+.++.+++..++
T Consensus 68 ~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 68 HLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 345667788888888888888866333
No 322
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=29.44 E-value=5.3e+02 Score=24.92 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEe--cC-----CcChhHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--TN-----PPFILEHLKE 294 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~--~~-----p~~i~~~l~~ 294 (453)
+++++++.++..-+.|+..+|+....++.++.. .+-.-++-.+.... .+++++. +. |-.+-+..
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~--~~p~~~~a~~a~~T-----~~i~lg~~v~~~~~~~P~~~A~~~-- 91 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHFTDYGSS--PDPFVLLAALAART-----KRIRLGTAVTPLPLRHPVRLAEQI-- 91 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTST--S-HHHHHHHHHHT------SSSEEEEEEEECSSS-HHHHHHHH--
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCccccc--hhHHHHHHHHhhcc-----CccceeeeeecccccchHHHHHHH--
Confidence 589999999988888999999987665555432 22234555555533 3344442 22 22222222
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhC
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELV 343 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vL-k~m~R~~--t~e~~~~~i~~lr~~~ 343 (453)
..+-...++ ++.+|+=+|+...- ..++... ..+.+.+.++.+++..
T Consensus 92 -atld~ls~G--R~~lgig~G~~~~~~~~~G~~~~~~~~~~~E~~~~i~~l~ 140 (307)
T PF00296_consen 92 -ATLDQLSGG--RFILGIGRGSSPDEFRAFGIPPDERYARMEEYLEVIRRLW 140 (307)
T ss_dssp -HHHHHHTTS---EEEEEESTSHHHHHHHCT-SHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhhcCCC--CceeEeeccCChhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 222222334 67788888887766 6665532 3455555666666554
No 323
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=29.21 E-value=1.5e+02 Score=28.41 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEec-ccCCCCHhH
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF-YPRPGIQFL 393 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~-sp~pGT~~~ 393 (453)
.+.+++.+.++.+.... ++.+..|+=-|| |.+...+.+|++-+.+.+..-+++--- .-.++.++.
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~ 117 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLV 117 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B-
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCcee
Confidence 47899999999999874 799999999999 889999999999999999998888665 112555554
No 324
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.23 E-value=2.6e+02 Score=21.03 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=21.2
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
.+-|++++-|.+=.. ..+.+.++.+|+.|.++|
T Consensus 46 ~~~d~~i~iS~sg~t---~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 46 RKGDVVIALSYSGRT---EELLAALEIAKELGIPVI 78 (87)
T ss_pred CCCCEEEEEECCCCC---HHHHHHHHHHHHcCCeEE
Confidence 345776665544332 346777888888888765
No 325
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.11 E-value=6.7e+02 Score=26.45 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHh
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (453)
.+++.+++-++.+.+.|+..|.+-| ..+. -.+....+|++++.+.+ + ..+.+..-+-..+.- .......
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D-t~G~---l~P~~v~~lv~alk~~~---~-~pi~~H~Hnt~GlA~--AN~laAi- 219 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD-MAGI---LTPYVAYELVKRIKEAV---T-VPLEVHTHATSGIAE--MTYLKAI- 219 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCCC---CCHHHHHHHHHHHHHhc---C-CeEEEEecCCCCcHH--HHHHHHH-
Confidence 6889999999999999999999875 3332 23356788888887764 2 334444222222211 1122222
Q ss_pred CCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 012929 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342 (453)
Q Consensus 301 ~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~ 342 (453)
..++..++..+-+ |..+...-...+++..++..
T Consensus 220 -eaGad~vD~sv~g--------lg~gaGN~~tE~lv~~L~~~ 252 (448)
T PRK12331 220 -EAGADIIDTAISP--------FAGGTSQPATESMVAALQDL 252 (448)
T ss_pred -HcCCCEEEeeccc--------cCCCcCCHhHHHHHHHHHhc
Confidence 3466777776663 44444444555555556554
No 326
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.11 E-value=2.4e+02 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=46.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
++|||...| .+..=.+++...|...|..... ...+-|++++ .++.... ..+.+.++.+|++|.
T Consensus 129 ~~I~i~G~G--~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~--iS~sg~~-~~~~~~~~~ak~~ga 203 (278)
T PRK11557 129 RRIILTGIG--ASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLA--ISYSGER-RELNLAADEALRVGA 203 (278)
T ss_pred CeEEEEecC--hhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEE--EcCCCCC-HHHHHHHHHHHHcCC
Confidence 577766555 5666678888888888866532 1334577666 3555443 346778889999998
Q ss_pred CEE-EEccc
Q 012929 127 PLV-VAGCV 134 (453)
Q Consensus 127 ~vV-vgGc~ 134 (453)
+|| +++-.
T Consensus 204 ~iI~IT~~~ 212 (278)
T PRK11557 204 KVLAITGFT 212 (278)
T ss_pred CEEEEcCCC
Confidence 766 55544
No 327
>PRK13774 formimidoylglutamase; Provisional
Probab=27.97 E-value=6.1e+02 Score=25.16 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChh----HHHHHHHHH
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL----EHLKEIAEV 298 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~----~~l~~l~~l 298 (453)
.+.|-+.+..+.+.|..-|.|-|++..+|| .++.+.+..+.....-+.|. .|.+.-+ ..---+..+
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g---------~~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~~~~i 175 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYA---------QYLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTSFRQI 175 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHH---------HHHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChHHHHH
Confidence 345555666677788888888887776664 23333332210011223332 1211100 000013333
Q ss_pred HhCCCCceeeecccCCCC--HHHHHhhcCC----CCHHHHHH--------HHHHHHHhCCCcEEE--EEEE-------Ee
Q 012929 299 LRHPCVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT--------VVDTLIELVPGMQIA--TDII-------CG 355 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs--~~vLk~m~R~----~t~e~~~~--------~i~~lr~~~pgi~v~--~~~I-------vG 355 (453)
+......+.+++|+++.. ++.++.+++. ++.+++.+ +++.+......+.++ .|.+ +|
T Consensus 176 ~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtg 255 (311)
T PRK13774 176 LEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVS 255 (311)
T ss_pred HhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCC
Confidence 333222468899999873 5555554432 24455433 444433211124444 4444 45
Q ss_pred CC---CCCHHHHHHHHHHHHh-cCCCeEEEEecccCCC
Q 012929 356 FP---GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPG 389 (453)
Q Consensus 356 ~P---gET~ed~~~tl~~i~~-l~~~~i~i~~~sp~pG 389 (453)
-| |=|..++.+.++.+.+ -++-.+.+.-|.|.-.
T Consensus 256 tP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 256 APAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 55 3566777666666533 3555667778888644
No 328
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.86 E-value=5.3e+02 Score=24.44 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
...+-++.+.+.|...|.|.-++. ..+.++++.|.+. | ....+. ++|..-.+.++.+...... -.
T Consensus 72 ~p~~~i~~fa~agad~It~H~E~~--------~~~~r~i~~Ik~~----G-~kaGv~-lnP~Tp~~~i~~~l~~vD~-Vl 136 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAEAT--------EHIHRTIQLIKEL----G-VKAGLV-LNPATPLEALEPVLDDVDL-VL 136 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEeccC--------cCHHHHHHHHHHc----C-CeEEEE-ECCCCCHHHHHHHHhhCCE-EE
Confidence 335666778888999999987621 3467788888653 2 333443 6776544443322221110 01
Q ss_pred ceee--ecccCCCCHHHHHhhcCC--CCH-----------HHHHHHHHHHHHhCCCcEEEEEEEEeC
Q 012929 305 YSFL--HVPVQSGSDAVLSAMNRE--YTL-----------SDFRTVVDTLIELVPGMQIATDIICGF 356 (453)
Q Consensus 305 ~~~l--~iglESgs~~vLk~m~R~--~t~-----------e~~~~~i~~lr~~~pgi~v~~~~IvG~ 356 (453)
.-.+ -+|=|+..+++|+++++- +-. ---.+.+..+.++..++.+.+..+++-
T Consensus 137 lMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 137 LMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred EEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 1111 257799999888766431 000 012345555555533455666666664
No 329
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=27.62 E-value=3e+02 Score=22.99 Aligned_cols=59 Identities=7% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEE-eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
.+.+.+..+.+++..++..+.+.|+= +.| ++.+.++-+.+.+...+.+.+|.-.+|--.
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~ 76 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHT 76 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCccc
Confidence 36777888888887667677776663 555 677888888888999999999998888644
No 330
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=27.46 E-value=53 Score=31.37 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=31.2
Q ss_pred CceEEEE---eeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEE
Q 012929 58 TETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (453)
Q Consensus 58 ~~~~~i~---t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~vii 101 (453)
.++||+. |-++.++... ..+...|...||.++++|++|-.|+=
T Consensus 50 ~ktVyv~vrNTSd~~~~~l~-~~i~~~L~~kGY~iv~~P~~A~Y~lQ 95 (243)
T PRK13731 50 ERTVFLQIKNTSDKDMSGLQ-GKIADAVKAKGYQVVTSPDKAYYWIQ 95 (243)
T ss_pred CceEEEEEeeCCCcchHHHH-HHHHHHHHhCCeEEecChhhceeeee
Confidence 5777774 4565444333 34667799999999999999988753
No 331
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.13 E-value=2.1e+02 Score=25.66 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
+.+...++.+.+++.+||+.+... --|+ -..++-.+.++.+.+.+++.+.+..
T Consensus 55 ~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 55 KPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEEC
Confidence 445566777899999999986543 2222 2334444589999999999877654
No 332
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.82 E-value=7.7e+02 Score=25.99 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCce---EE----EEec-CCcChhH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTM---LR----IGMT-NPPFILE 290 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg-~d~~~~l~~Ll~~l~~~i~~~~~~~---ir----~~~~-~p~~i~~ 290 (453)
..+.++.+.-+..+.+.|+..|.+.+...+... +-....-.+.++.+.+.++ +..- .| .++. .|+++.+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHH
Confidence 567788888888888889999998765432210 0011234677777766544 2111 11 1111 2444443
Q ss_pred HHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCCHHHHHHHHH
Q 012929 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVN 369 (453)
Q Consensus 291 ~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET~ed~~~tl~ 369 (453)
.. +....+ .++..+++.. +.|+. ..+.++++.+++. |..+...+-+-+ |--|.+-+.+..+
T Consensus 100 ~~--v~~A~~--~Gvd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~p~~~~~~~~~~a~ 161 (448)
T PRK12331 100 SF--VQKSVE--NGIDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTSPVHTIDYFVKLAK 161 (448)
T ss_pred HH--HHHHHH--CCCCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 32 333333 3445555544 33432 2366688888888 866544332222 6667788888888
Q ss_pred HHHhcCCCeEEE
Q 012929 370 LIKEYKFPQVHI 381 (453)
Q Consensus 370 ~i~~l~~~~i~i 381 (453)
.+.+++.+.+.+
T Consensus 162 ~l~~~Gad~I~i 173 (448)
T PRK12331 162 EMQEMGADSICI 173 (448)
T ss_pred HHHHcCCCEEEE
Confidence 888888876654
No 333
>PLN02932 3-ketoacyl-CoA synthase
Probab=26.68 E-value=77 Score=33.72 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCC-EEE--EccccCCch
Q 012929 79 AGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKP-LVV--AGCVPQGSR 139 (453)
Q Consensus 79 ~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-~~~-vVv--gGc~a~~~~ 139 (453)
...|++.|.. +++-|++|+|||+.. +.-.-...+++++.-+ +.+ .=+ .||.+....
T Consensus 157 ~~aL~~agi~----p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~a 216 (478)
T PLN02932 157 DNLFRNTGIS----PSDIGILVVNSSTFN-PTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIA 216 (478)
T ss_pred HHHHHHcCCC----HHHCCEEEEEccCCC-CCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHH
Confidence 3445666754 467899999999985 3333344556666543 433 324 389876655
No 334
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.57 E-value=1.8e+02 Score=24.43 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCeee--C-------CCCCCcEEEEeeccccc-chH-HHHHHHHHHHhh---CCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKS-PSQ-SAMDTLIAKCKS---AKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~--~-------~~~~AD~viinTCtv~~-~a~-~~~~~~i~~~~~---~~~~vVvgGc~a~~ 137 (453)
+.|+..|.+.|+++. + +..++|.+++-|.+.-. ..- ..+...++++.. +|+++++=|...+.
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~~ 92 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDWG 92 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCCC
Confidence 344555656676542 1 22458999997777432 121 345555555543 45666665655443
No 335
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.47 E-value=2.7e+02 Score=25.52 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----CCCCcEEEEeecccccch---HHHHHHHHHHHhhCCCCEEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----SEEADIWLINTCTVKSPS---QSAMDTLIAKCKSAKKPLVV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----~~~AD~viinTCtv~~~a---~~~~~~~i~~~~~~~~~vVv 130 (453)
+|+.|+-+|+. +...++..|++.|+++.-. .+++|.++|........+ .....+.++++.+.++ -++
T Consensus 1 ~~~~v~~~~~~----~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~-Pil 75 (200)
T PRK13143 1 MMIVIIDYGVG----NLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGK-PFL 75 (200)
T ss_pred CeEEEEECCCc----cHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEE
Confidence 57889999864 4467889999999876422 246799999553222111 1123455555555554 444
Q ss_pred Eccc
Q 012929 131 AGCV 134 (453)
Q Consensus 131 gGc~ 134 (453)
|=|.
T Consensus 76 gIC~ 79 (200)
T PRK13143 76 GICL 79 (200)
T ss_pred EECH
Confidence 4465
No 336
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.40 E-value=8.3e+02 Score=26.21 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHh
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (453)
.+++.+++-++.+.+.|+..|.+-| .. |.-.+....+|+++|.+.++ ....+.+.+-+...+.- ....+..
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD-ta---Gll~P~~~~~LV~~Lk~~~~--~~ipI~~H~Hnt~GlA~--An~laAi- 222 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD-MA---ALLKPQPAYDIVKGIKEACG--EDTRINLHCHSTTGVTL--VSLMKAI- 222 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-Cc---cCCCHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCcHH--HHHHHHH-
Confidence 3899999999999999999999875 33 33234567889999887653 13445554322222221 1122222
Q ss_pred CCCCceeeecccCCC
Q 012929 301 HPCVYSFLHVPVQSG 315 (453)
Q Consensus 301 ~~~~~~~l~iglESg 315 (453)
..++..++..+-+.
T Consensus 223 -eAGad~vDtai~Gl 236 (499)
T PRK12330 223 -EAGVDVVDTAISSM 236 (499)
T ss_pred -HcCCCEEEeecccc
Confidence 35677887777665
No 337
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=26.34 E-value=6.3e+02 Score=24.81 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=76.4
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-.+.|.++=++-++.|.+.|+++|.+. +...+.. -.+.++++.+... .....++..+.+. ...++ ..
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~--~~~~~~~~al~r~-~~~di---e~ 83 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDL--IPDDVTIQVLTQA-REDLI---ER 83 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccC--CCCCCEEEEEcCC-ChhhH---HH
Confidence 467899999999999999999999874 3343322 2467777754310 0011233222222 12212 22
Q ss_pred HHhCCCCce--eeecccCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhCCCcE-EEEEEEEeCCCC----C-HHHHHH
Q 012929 298 VLRHPCVYS--FLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQ-IATDIICGFPGE----T-DEDFNQ 366 (453)
Q Consensus 298 l~~~~~~~~--~l~iglESgs~~vL-k~m~R~~--t~e~~~~~i~~lr~~~pgi~-v~~~~IvG~PgE----T-~ed~~~ 366 (453)
.......+. .+++-+ |.|+.-+ +.+|+.. ..+.+.+.++.+++. |+. +++.|.+-|-+| + .+.+.+
T Consensus 84 a~~~~~~~~~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~EDasr~~~~~l~~ 160 (284)
T cd07942 84 TFEALRGAKKAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPESFSDTELDFALE 160 (284)
T ss_pred HHHHhCCCCCCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCccCCCCCHHHHHH
Confidence 222211222 566655 4455544 5666643 456677788888888 653 345555655553 3 344444
Q ss_pred HHHHHHhc
Q 012929 367 TVNLIKEY 374 (453)
Q Consensus 367 tl~~i~~l 374 (453)
.++.+.+.
T Consensus 161 ~~~~~~~~ 168 (284)
T cd07942 161 VCEAVIDV 168 (284)
T ss_pred HHHHHHHh
Confidence 45555444
No 338
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=26.23 E-value=1.7e+02 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=16.6
Q ss_pred EEEEeeCCCcChhHHHHHHHHHHHcCCee
Q 012929 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89 (453)
Q Consensus 61 ~~i~t~GC~~N~~dse~~~~~L~~~g~~~ 89 (453)
|.|.-+|++.|. ...|++.|+.+
T Consensus 1 i~i~d~g~~~~~------~~~l~~~G~~~ 23 (178)
T cd01744 1 VVVIDFGVKHNI------LRELLKRGCEV 23 (178)
T ss_pred CEEEecCcHHHH------HHHHHHCCCeE
Confidence 468889998764 56777778654
No 339
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=26.19 E-value=1.8e+02 Score=32.06 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchh
Q 012929 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD 140 (453)
Q Consensus 80 ~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e 140 (453)
..+++.|..+|+-.-..=+++| .|+ +..+.+..+++.+.++|.-|++.|.....+++
T Consensus 121 ~iiR~~GvplVdG~IPGvaaIv-G~a---pd~e~a~~Ia~Elq~r~~lvfl~G~l~EQl~e 177 (711)
T PRK09529 121 PILRKLGVELVDGTIPGFAVIV-GAA---PDSEKAKKIIKELQKKNLLTFLCGEVIEQLIE 177 (711)
T ss_pred HHHHhcCCceecCCCCeEEEEE-ecC---CChHHHHHHHHHHHHCCcEEEEcCcHHHHhhh
Confidence 3478888888876555445555 677 33367888999999999888888877766664
No 340
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=25.99 E-value=8.5e+02 Score=26.24 Aligned_cols=151 Identities=13% Similarity=0.017 Sum_probs=85.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE-EEec-CCcChhHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMT-NPPFILEHLKEI 295 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir-~~~~-~p~~i~~~l~~l 295 (453)
-.+.+.++-++-++.|.+.|+++|...- ...+. .-.+.++++.+.-. ....+. +... .++...+....+
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~s~----~d~~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~ 87 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGGW---PGANP----KDVQFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKML 87 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHH
Confidence 4678999999999999999999998731 11111 11455666654210 112221 2112 222111111113
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEE---EeCCCCCHHHHHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII---CGFPGETDEDFNQTVNL 370 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~I---vG~PgET~ed~~~tl~~ 370 (453)
..+.. .+...+|+-+=+-+-.+...+++. ...+.+.+.++.+++. |..+..+.. -|+- -+.+.+.+.++.
T Consensus 88 ea~~~--~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 88 QALIK--AETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHhc--CCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 33333 234567776644444444566653 3456677778899998 877654333 3432 356777788888
Q ss_pred HHhcCCCeEEEE
Q 012929 371 IKEYKFPQVHIS 382 (453)
Q Consensus 371 i~~l~~~~i~i~ 382 (453)
+.+.+.+.+.+.
T Consensus 163 a~~aGad~i~i~ 174 (526)
T TIGR00977 163 AQQAGADWLVLC 174 (526)
T ss_pred HHhCCCCeEEEe
Confidence 888888887664
No 341
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=25.98 E-value=1.8e+02 Score=29.22 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=36.4
Q ss_pred cccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------CCCHHHHHHHHHHhCC
Q 012929 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELP 271 (453)
Q Consensus 213 ~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-------~~~l~~Ll~~l~~~i~ 271 (453)
.+.|-+ ..+++.+++|++.+.+.|++.|.|.+.-........ ..-+...++.|.+.+|
T Consensus 47 smPg~~-r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 47 SMPGVY-RYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp TSTTEE-EEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred CCCCee-eeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 333434 458999999999999999999998875111111111 1235677888887776
No 342
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=25.88 E-value=1.9e+02 Score=27.29 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCeee----CC---------CCCCcEEEEeeccc
Q 012929 75 SEYMAGQLSAFGYALT----DN---------SEEADIWLINTCTV 106 (453)
Q Consensus 75 se~~~~~L~~~g~~~~----~~---------~~~AD~viinTCtv 106 (453)
++.|+..|++.||++. ++ ....|+||..+|+-
T Consensus 25 ~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~ 69 (215)
T cd03142 25 HGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIA 69 (215)
T ss_pred HHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCC
Confidence 5778999999999975 12 23789999865553
No 343
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.84 E-value=4.1e+02 Score=24.18 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEeecCCC
Q 012929 223 VESLVGRVRTVIAD-GVKEVWLSSEDTG 249 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~ 249 (453)
.+++++.++.+.+. |+ |+|+|.|+.
T Consensus 34 ~~~~i~~i~~~~~~rgV--IIfTDpD~~ 59 (174)
T TIGR00334 34 KDETINLIKKAQKKQGV--IILTDPDFP 59 (174)
T ss_pred CHHHHHHHHHHhhcCCE--EEEeCCCCc
Confidence 46677788776654 66 888887753
No 344
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.62 E-value=2.9e+02 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=24.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEccc
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCV 134 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~ 134 (453)
.+-|++++=|.+=.+ ..+.+.++.+|++|.+|| +++-.
T Consensus 100 ~~~Dv~I~iS~SG~t---~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSGNS---PNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCCCC---HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 445787764544332 357788899999998766 66653
No 345
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=25.47 E-value=2.5e+02 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=15.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHH
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKC 121 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~ 121 (453)
.+||.|++-|.+........+...++++
T Consensus 68 ~~aD~ii~gsPty~g~~~~~lk~fld~~ 95 (200)
T PRK03767 68 ADYDAIIFGTPTRFGNMAGQMRNFLDQT 95 (200)
T ss_pred HhCCEEEEEecccCCCchHHHHHHHHHh
Confidence 3577777766665444334455555554
No 346
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=25.40 E-value=6.2e+02 Score=24.93 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=77.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.+-++.+.+++|+++....|+..++|. .++|.... -.+-++++.+.+. +
T Consensus 81 ~~ekS~~~l~~e~~r~~~lG~~~lv~H---pG~~~~~~---~e~~l~~i~~~Ln-------------------------~ 129 (280)
T COG0648 81 KVEKSIERLIDEIDRCEQLGAKLLVFH---PGSYLGQG---KEEGLNRIAEALN-------------------------E 129 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEC---CccccCCC---HHHHHHHHHHHHH-------------------------H
Confidence 477889999999999999999999995 46665432 2334444433211 0
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-cEEEEEE----EEeCCCCCHHHHHHHHHHHH
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDI----ICGFPGETDEDFNQTVNLIK 372 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg-i~v~~~~----IvG~PgET~ed~~~tl~~i~ 372 (453)
+..... +.+.+|.... +-++++.+.+++.++++.+.+. . +.+..|+ -.|+.--|.++|.++++.+.
T Consensus 130 ~~~~~~----v~i~~e~~ag---egs~~g~~F~~L~eii~~~~~~--~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d 200 (280)
T COG0648 130 LLEEEG----VIILLENTAG---EGSGKGTQFGELAEIIDLIEEK--ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFD 200 (280)
T ss_pred HhhccC----CeEEEEEecc---ccCccccchhhHHHHHHhhccc--CceEEEEEchhhhhccCCcCcHHHHHHHHHHHH
Confidence 000000 1111111111 2355677888999999999887 4 6666554 44555566689999998776
Q ss_pred h-cCCCeEEEEeccc
Q 012929 373 E-YKFPQVHISQFYP 386 (453)
Q Consensus 373 ~-l~~~~i~i~~~sp 386 (453)
+ ++++++...-++-
T Consensus 201 ~~~G~~~~~~~Hlnd 215 (280)
T COG0648 201 KVLGLEYLKHIHLND 215 (280)
T ss_pred HHhChhhheeEeecC
Confidence 4 4665444444443
No 347
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=25.30 E-value=3.2e+02 Score=26.00 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred EeeCCCcChhHHHHHHHHHHHcCCeee--C----------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 64 KTFGCSHNQSDSEYMAGQLSAFGYALT--D----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 64 ~t~GC~~N~~dse~~~~~L~~~g~~~~--~----------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
.-+||-.+..=.+.+...|...|.... + ...+-|++++=| ....+ +.+.+.++.+|+.|.+|| +
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~a~~~g~~ii~i 80 (268)
T TIGR00393 4 VIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMIS--YSGES-LELLNLIPHLKRLSHKIIAF 80 (268)
T ss_pred EEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHcCCcEEEE
Confidence 345555777777888888888886652 1 223457776633 33333 357888899999998766 5
Q ss_pred Eccc
Q 012929 131 AGCV 134 (453)
Q Consensus 131 gGc~ 134 (453)
++-.
T Consensus 81 T~~~ 84 (268)
T TIGR00393 81 TGSP 84 (268)
T ss_pred ECCC
Confidence 5543
No 348
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.18 E-value=5.9e+02 Score=24.09 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+-++-++.+.+.|+++++++|-|.. .|.. .+ .++++++.+... ..+.++ -. +. .++++..++. .+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~--~n-~~~i~~i~~~~~----~pv~vg-GG---ir-s~edv~~~l~--~G 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRG--SN-RELLAEVVGKLD----VKVELS-GG---IR-DDESLEAALA--TG 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCC--cc-HHHHHHHHHHcC----CCEEEc-CC---CC-CHHHHHHHHH--CC
Confidence 5566777777899999999997743 3432 33 489999987531 223332 11 11 1122444444 34
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE------EEeCCCCCHHHHHHHHHHHHhcCCCe
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI------ICGFPGETDEDFNQTVNLIKEYKFPQ 378 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~------IvG~PgET~ed~~~tl~~i~~l~~~~ 378 (453)
+..+.+|-.... +.+-+.++++.+.+ .+.++.|+ +.|+- ++..+..+.++.+.+.+.+.
T Consensus 98 a~kvviGs~~l~-----------~p~l~~~i~~~~~~---~i~vsld~~~~~v~~~Gw~-~~~~~~~~~~~~l~~~G~~~ 162 (241)
T PRK14024 98 CARVNIGTAALE-----------NPEWCARVIAEHGD---RVAVGLDVRGHTLAARGWT-RDGGDLWEVLERLDSAGCSR 162 (241)
T ss_pred CCEEEECchHhC-----------CHHHHHHHHHHhhh---hEEEEEEEeccEeccCCee-ecCccHHHHHHHHHhcCCCE
Confidence 566666655432 22333344444433 23444444 12331 34445556666677888887
Q ss_pred EEEEecc
Q 012929 379 VHISQFY 385 (453)
Q Consensus 379 i~i~~~s 385 (453)
+-++.-+
T Consensus 163 iiv~~~~ 169 (241)
T PRK14024 163 YVVTDVT 169 (241)
T ss_pred EEEEeec
Confidence 7766544
No 349
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=25.10 E-value=6.8e+02 Score=24.77 Aligned_cols=105 Identities=16% Similarity=0.295 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEec--C-----CcChhHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--N-----PPFILEHLKE 294 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~--~-----p~~i~~~l~~ 294 (453)
+++++++.++..-+.|+..+|+.+ +.+.+ +-.-++-.+.... .++++++. . |-.+-.....
T Consensus 12 ~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~~------~~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~at 79 (325)
T PRK02271 12 PVKKIAYLAKLAEDNGFDYAWITD-HYNNR------DVYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIAT 79 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc-ccCCC------CHHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHHH
Confidence 678889998888788999998765 43221 2245556665532 45666541 2 2222222211
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 343 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~--t~e~~~~~i~~lr~~~ 343 (453)
|. ...++ ++.+|+=+|+...++.++.++ ....+.+.++.+++.+
T Consensus 80 Ld---~ls~G--R~~lG~G~G~~~~~~~~G~~~~~~~~~~~E~l~ilr~l~ 125 (325)
T PRK02271 80 LD---EISGG--RAVLGIGPGDKATLDALGIEWEKPLRTVKEAIEVIRKLW 125 (325)
T ss_pred HH---HHcCC--CEEEEecCCCHHHHHHcCCCcccHHHHHHHHHHHHHHHh
Confidence 22 22234 678888899888888887654 3566777777777653
No 350
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=25.02 E-value=9.3e+02 Score=26.33 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCceeeecccCCCC--HHHHHhhcCCCC----HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHH
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYT----LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs--~~vLk~m~R~~t----~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~t 367 (453)
.+.+.++..+. -+-||+-||| ++++.+.+ .+ ++...+-++.+.+. |. .||++-+-.-+.-...++
T Consensus 149 ~vV~~ake~~~--~IRIGvN~GSL~~~i~~~yG--~tpegmVeSAle~~~i~e~~--~f---~diviS~KsSnv~~mi~A 219 (606)
T PRK00694 149 PLVEKCKRLGK--AMRIGVNHGSLSERVMQRYG--DTIEGMVYSALEYIEVCEKL--DY---RDVVFSMKSSNPKVMVAA 219 (606)
T ss_pred HHHHHHHHCCC--CEEEecCCcCchHHHHHHhC--CCHHHHHHHHHHHHHHHHHC--CC---CcEEEEEEcCCHHHHHHH
Confidence 34444443333 4667888776 66766654 24 35556667777777 65 577777776666666666
Q ss_pred HHHHHh
Q 012929 368 VNLIKE 373 (453)
Q Consensus 368 l~~i~~ 373 (453)
.+++.+
T Consensus 220 yrlLa~ 225 (606)
T PRK00694 220 YRQLAK 225 (606)
T ss_pred HHHHHH
Confidence 666543
No 351
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.78 E-value=4.4e+02 Score=24.60 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~ 281 (453)
..+++.+.+-++.+.+.|+..|.|.| ..+.. .+..+.++++.+.+.++ . ..+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~D-t~G~~---~P~~v~~lv~~~~~~~~--~-~~l~~H 187 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLAD-TVGIM---TPEDVAELVRALREALP--D-IPLGFH 187 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEEE-TTS-S----HHHHHHHHHHHHHHST--T-SEEEEE
T ss_pred cccHHHHHHHHHHHHHcCCeEEEeeC-ccCCc---CHHHHHHHHHHHHHhcc--C-CeEEEE
Confidence 34788999999999888999999876 33332 34567899999988875 3 455554
No 352
>PRK14057 epimerase; Provisional
Probab=24.78 E-value=6.5e+02 Score=24.40 Aligned_cols=136 Identities=7% Similarity=0.025 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l--~~~d~~~yg~d~~~~l-~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
-+.+.-++-+|++.+.+.|+..+.+ .|.+| -... .| ++.++.+.+.+ ...+.+...+|....
T Consensus 27 l~aD~~~L~~el~~l~~~g~d~lHiDVMDG~F---VPNi--tfGp~~i~~i~~~~----p~DvHLMV~~P~~~i------ 91 (254)
T PRK14057 27 LAGQWIALHRYLQQLEALNQPLLHLDLMDGQF---CPQF--TVGPWAVGQLPQTF----IKDVHLMVADQWTAA------ 91 (254)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCcc---CCcc--ccCHHHHHHhccCC----CeeEEeeeCCHHHHH------
Confidence 4556678889999999989877654 33322 2211 11 45666664322 134555545554322
Q ss_pred HHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-------EEEEEEEeCCCCCHHHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-------IATDIICGFPGETDEDFNQTV 368 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-------v~~~~IvG~PgET~ed~~~tl 368 (453)
..+.+ .++..+.+=.|+. ....+.++.+|++ |+. +.+.+-+. |+-..+.++..+
T Consensus 92 ~~~~~--aGad~It~H~Ea~--------------~~~~~~l~~Ir~~--G~k~~~~~~~~kaGlAln-P~Tp~e~i~~~l 152 (254)
T PRK14057 92 QACVK--AGAHCITLQAEGD--------------IHLHHTLSWLGQQ--TVPVIGGEMPVIRGISLC-PATPLDVIIPIL 152 (254)
T ss_pred HHHHH--hCCCEEEEeeccc--------------cCHHHHHHHHHHc--CCCcccccccceeEEEEC-CCCCHHHHHHHH
Confidence 22333 2445666667753 2356788899998 763 34455555 777777766555
Q ss_pred HHHHhcCCCeEEEEecccCCCCHhH
Q 012929 369 NLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 369 ~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+ .+|.+-+..-.|--|-..+
T Consensus 153 ~-----~vD~VLvMtV~PGfgGQ~F 172 (254)
T PRK14057 153 S-----DVEVIQLLAVNPGYGSKMR 172 (254)
T ss_pred H-----hCCEEEEEEECCCCCchhc
Confidence 4 2455655554443333444
No 353
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.61 E-value=3.1e+02 Score=22.53 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred eeCCCcChhHHHHHHHHHHHcC-CeeeC-----------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EE
Q 012929 65 TFGCSHNQSDSEYMAGQLSAFG-YALTD-----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (453)
Q Consensus 65 t~GC~~N~~dse~~~~~L~~~g-~~~~~-----------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vg 131 (453)
-+||-.+..=...++..|...| ....- ...+-|++++=| ....+ ..+.+.++.++++|.+|| ++
T Consensus 4 i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS--~sG~t-~e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 4 IVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAIS--QSGET-ADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred EEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEe--CCcCC-HHHHHHHHHHHHcCCeEEEEE
Confidence 3466666666677777777765 33211 123456666633 33333 347888899999998766 56
Q ss_pred cc
Q 012929 132 GC 133 (453)
Q Consensus 132 Gc 133 (453)
+-
T Consensus 81 ~~ 82 (126)
T cd05008 81 NV 82 (126)
T ss_pred CC
Confidence 54
No 354
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=24.43 E-value=2.4e+02 Score=27.64 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=42.6
Q ss_pred CCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCC-cEEEEEEEEeCCCCC-HHHHHHHHHHHHhcC
Q 012929 315 GSDAVLSAMNR-EYTLSDFRTVVDTLIELVPG-MQIATDIICGFPGET-DEDFNQTVNLIKEYK 375 (453)
Q Consensus 315 gs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pg-i~v~~~~IvG~PgET-~ed~~~tl~~i~~l~ 375 (453)
.+++.++.+++ +++.+.+.++++.+.++ | -.+..|+++-.|+.+ +++-....+.+++.+
T Consensus 48 ID~~Sl~~~g~~Pw~R~~~A~ll~~L~~~--ga~~I~~Di~f~~~~~~~~~~D~~la~al~~~~ 109 (310)
T PF05226_consen 48 IDDESLAELGRWPWPRSVYARLLDRLAAA--GAKAIGFDILFDEPDPSNPEGDQALAEALRRAG 109 (310)
T ss_pred ECHHHHHHhCCCCCCHHHHHHHHHHHHhC--CCCEEEEEeeecCCCCCCchHHHHHHHHHHhCC
Confidence 36777888777 67889999999999998 6 458899999998532 233334444456654
No 355
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=24.30 E-value=79 Score=27.19 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=27.8
Q ss_pred CceEEEEee---CCCcChhHHHH----HHHHHHHcCCeeeCCCCCCcEEEE
Q 012929 58 TETIYMKTF---GCSHNQSDSEY----MAGQLSAFGYALTDNSEEADIWLI 101 (453)
Q Consensus 58 ~~~~~i~t~---GC~~N~~dse~----~~~~L~~~g~~~~~~~~~AD~vii 101 (453)
-+++.+..- -=..|..+-+. +...|.+.||..+ .+.||++|-
T Consensus 17 ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~--~~~aDl~V~ 65 (151)
T PF13590_consen 17 YKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRV--PENADLLVS 65 (151)
T ss_pred CCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeec--ccCCCEEEE
Confidence 456666665 23444444443 5566778999998 678999876
No 356
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.03 E-value=5.6e+02 Score=25.77 Aligned_cols=136 Identities=12% Similarity=0.129 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc-ChhHHHHHHHHHHh
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVLR 300 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l~~ 300 (453)
++++.+++++.+.++|++.+.+-- |.+....-.+.++++.+.+. ....+++.. |.. ...+.+ .+.+.+.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKv------g~~~~~~d~~~v~air~~~g--~~~~l~vDa-N~~~~~~~A~-~~~~~l~ 210 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKI------GYPTADEDLAVVRSIRQAVG--DGVGLMVDY-NQSLTVPEAI-ERGQALD 210 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhc------CCCChHhHHHHHHHHHHhhC--CCCEEEEeC-CCCcCHHHHH-HHHHHHH
Confidence 477888999999888988776631 11101122567778877664 345666663 322 222222 2222222
Q ss_pred CCCCceeeecccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCcE-EEEEEE-EeCCCCCHHHHHHH
Q 012929 301 HPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQ-IATDII-CGFPGETDEDFNQT 367 (453)
Q Consensus 301 ~~~~~~~l~iglESgs~~vLk~m~R~-----------~t~e~~~~~i~~lr~~~pgi~-v~~~~I-vG~PgET~ed~~~t 367 (453)
. ....++.=|+...+.+.++.+++. ++..++.+.++ .. .+. +..++. +| ....+.+.
T Consensus 211 ~-~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~---~~--~~d~i~~~~~~~G----Git~~~~i 280 (355)
T cd03321 211 Q-EGLTWIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALS---AG--ACDLVMPDLMKIG----GVTGWLRA 280 (355)
T ss_pred c-CCCCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHH---hC--CCCeEecCHhhhC----CHHHHHHH
Confidence 2 234688888888887777666553 23444444432 21 111 111211 12 23566777
Q ss_pred HHHHHhcCCC
Q 012929 368 VNLIKEYKFP 377 (453)
Q Consensus 368 l~~i~~l~~~ 377 (453)
.++++..++.
T Consensus 281 a~~A~~~gi~ 290 (355)
T cd03321 281 SALAEQAGIP 290 (355)
T ss_pred HHHHHHcCCe
Confidence 8888888765
No 357
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=24.00 E-value=68 Score=30.48 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEcccc
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVP 135 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~a 135 (453)
.++|+.+| +=+++... ....+.+++++++-+.|| +|=|..
T Consensus 49 ~~~dil~V-eG~i~~~~-~~~~~~~~~~~~~ak~vVA~GtCA~ 89 (228)
T TIGR03294 49 PEMDVALV-EGSVCLQD-EHSLEEIKELREKAKVVVALGACAA 89 (228)
T ss_pred CCccEEEE-eCCCCCCc-cHHHHHHHHHhccCCEEEEeecccc
Confidence 56999999 45665432 234566676655433333 555543
No 358
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=23.97 E-value=3.9e+02 Score=25.80 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=38.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.+..+...|+.++..+-+.+...+.+ ...++|+++|++..-.....+.+..+++.+++.|++|++-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D 163 (303)
T TIGR03168 98 EETELNEPGPEISEEELEQLLEKLRE-------LLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILD 163 (303)
T ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHH-------hccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34445556777666655544444432 1256899999654321122344667777788888877653
No 359
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=23.97 E-value=3.3e+02 Score=26.80 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=48.0
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
++|||...| .+..-.++++..|...|+.... ...+-|++++=| ....+ ..+.+.++.+|++|.
T Consensus 43 ~~I~i~G~G--~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g~ 117 (321)
T PRK11543 43 GKVVVSGIG--KSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS--YSGGA-KELDLIIPRLEDKSI 117 (321)
T ss_pred CcEEEEecC--hhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEe--CCCCc-HHHHHHHHHHHHcCC
Confidence 467776666 7777888899999988975431 123457777733 33333 357888899999998
Q ss_pred CEE-EEccc
Q 012929 127 PLV-VAGCV 134 (453)
Q Consensus 127 ~vV-vgGc~ 134 (453)
+|| ++|-.
T Consensus 118 ~vI~iT~~~ 126 (321)
T PRK11543 118 ALLAMTGKP 126 (321)
T ss_pred eEEEEECCC
Confidence 766 56643
No 360
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.89 E-value=4.8e+02 Score=25.19 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i 381 (453)
|.++..+.++.+.+...| ...+|+|.-+.+.++..+..+.+++++.+.+.+
T Consensus 51 t~~Er~~l~~~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~ 101 (284)
T cd00950 51 SDEEHEAVIEAVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKAGADAALV 101 (284)
T ss_pred CHHHHHHHHHHHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 444555555555544322 123445554444455555555555555554433
No 361
>PRK03094 hypothetical protein; Provisional
Probab=23.89 E-value=61 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHHHHHcCCeeeCCC-----CCCcEEEE
Q 012929 78 MAGQLSAFGYALTDNS-----EEADIWLI 101 (453)
Q Consensus 78 ~~~~L~~~g~~~~~~~-----~~AD~vii 101 (453)
+...|++.||++++.. ...|.++|
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~Vi 41 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVV 41 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEE
Confidence 8899999999998653 34677777
No 362
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.74 E-value=2.5e+02 Score=27.25 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=47.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
.+|+|. |+.-...=.+++...|...|..... ...+-|++++ .++...+ ..+.+.++.+++.|.
T Consensus 141 ~~I~i~--G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~--iS~sG~t-~~~~~~~~~ak~~g~ 215 (292)
T PRK11337 141 RQRDLY--GAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLV--VSHSGRT-SDVIEAVELAKKNGA 215 (292)
T ss_pred CeEEEE--EecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEE--EeCCCCC-HHHHHHHHHHHHCCC
Confidence 567764 5556677777888888888875531 1244577766 3444333 347788888999998
Q ss_pred CEE-EEccccC
Q 012929 127 PLV-VAGCVPQ 136 (453)
Q Consensus 127 ~vV-vgGc~a~ 136 (453)
+|| +++....
T Consensus 216 ~ii~IT~~~~s 226 (292)
T PRK11337 216 KIICITNSYHS 226 (292)
T ss_pred eEEEEeCCCCC
Confidence 765 6665543
No 363
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=23.72 E-value=3.6e+02 Score=26.65 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~ 126 (453)
++|+|...| .+..-.++++..|...|+.... ...+-|++++=|.+=. -+.+.+.++.++..|.
T Consensus 48 ~~I~i~G~G--~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~---t~~~~~~~~~ak~~g~ 122 (326)
T PRK10892 48 GKVVVMGMG--KSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGE---SSEILALIPVLKRLHV 122 (326)
T ss_pred CeEEEEeCc--HhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCC---CHHHHHHHHHHHHCCC
Confidence 477776555 7777778888889888876442 1234577776443322 2457888899999998
Q ss_pred CEE-EEcccc
Q 012929 127 PLV-VAGCVP 135 (453)
Q Consensus 127 ~vV-vgGc~a 135 (453)
+|| +++...
T Consensus 123 ~vi~iT~~~~ 132 (326)
T PRK10892 123 PLICITGRPE 132 (326)
T ss_pred cEEEEECCCC
Confidence 766 555443
No 364
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.62 E-value=2.6e+02 Score=25.13 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCeeeCC-----------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEcc
Q 012929 75 SEYMAGQLSAFGYALTDN-----------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~~-----------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc 133 (453)
...+...|...||+.+.. ....|.++| |+. +..+..++.++|+.|+.|++-|.
T Consensus 68 ~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vL----vSg--D~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 68 SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVAL----VTR--DADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEE----Eec--cHhHHHHHHHHHHCCCEEEEEeC
Confidence 445678888889886421 245566666 222 34577788889999998887774
No 365
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=23.45 E-value=3.4e+02 Score=27.15 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=38.4
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC----CCC---cCCCHHHHHHHHHHhCC
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GRD---IGVNLPILLNAIVAELP 271 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y----g~d---~~~~l~~Ll~~l~~~i~ 271 (453)
+.+.|- ...+++.+++|++.+.+.|++.|.|.+...... |.. ...-+..-++.+.+.+|
T Consensus 43 ~smPg~-~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 43 PSMPGV-FRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred CCCCCc-eeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 344443 455899999999999999999999987521111 111 11235667777776665
No 366
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=23.13 E-value=3.2e+02 Score=26.79 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC--cCC----CHHHHHHHHHHhCCCCCCceEEEEecCCcC
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD--IGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d--~~~----~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (453)
...+.+.+-+++..+.|++-+.+.++ +..+... ... .+.+.++++.+.+ ....+|++ ++|+.
T Consensus 42 ~Nl~~l~~~L~~n~~~~I~~yRisS~-liP~ashp~~~~~~~~~~~~~l~~iG~~~---~~~~iRls-~HP~q 109 (275)
T PF03851_consen 42 QNLEDLLRILEYNIAHGIRFYRISSD-LIPLASHPEVGWDWEEEFAEELAEIGDLA---KENGIRLS-MHPDQ 109 (275)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE--TT-SSTTTTSTT--S-HHHHHHHHHHHHHHHH---HHTT-EEE-E---T
T ss_pred HHHHHHHHHHHHHHHcCCCEEecCcc-cCCCCCCcccccchHHHHHHHHHHHHHHH---HHcCCeEE-ecCCc
Confidence 35566677777788889999999874 4443222 112 3444444444332 23467887 56553
No 367
>TIGR00035 asp_race aspartate racemase.
Probab=23.03 E-value=53 Score=30.99 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=44.6
Q ss_pred CceEEEE-eeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccc---c----cchHHHHHHHHHHHhhCCCCEE
Q 012929 58 TETIYMK-TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV---K----SPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 58 ~~~~~i~-t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv---~----~~a~~~~~~~i~~~~~~~~~vV 129 (453)
.++|.+. |-| ...+......|.+.|++++. +.....-.|..+-+ . ..+.+.+.+.++++.++|.-+|
T Consensus 117 ~~~VgvLaT~~----T~~s~~y~~~l~~~g~~v~~-p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~i 191 (229)
T TIGR00035 117 VKKAGLLGTKG----TMKDGVYEREMKKHGIEIVT-PDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGI 191 (229)
T ss_pred CCEEEEEecHH----HHHhHHHHHHHHHCCCEEEC-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEE
Confidence 3577776 443 45667788999999998875 33322111222211 1 2344456677777777788899
Q ss_pred EEccc
Q 012929 130 VAGCV 134 (453)
Q Consensus 130 vgGc~ 134 (453)
+-||-
T Consensus 192 ILgCT 196 (229)
T TIGR00035 192 ILGCT 196 (229)
T ss_pred EEeCc
Confidence 99995
No 368
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=22.96 E-value=2.8e+02 Score=25.75 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCCceEEEEecCCc
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-----~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~ 286 (453)
+..+.++.+++++++.+.|..-|-+-++-+..+..... ..+..+++.+.+.. ....+.+.+.+|.
T Consensus 14 ~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSIDT~~~~ 83 (210)
T PF00809_consen 14 RKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSIDTFNPE 83 (210)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEESSHH
T ss_pred cccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEEECCCHH
Confidence 34456888899999999999988776544332221111 24555555555311 2356777776664
No 369
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=22.91 E-value=3.4e+02 Score=24.36 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=40.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccc----------------------hHHHHHH
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP----------------------SQSAMDT 116 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~----------------------a~~~~~~ 116 (453)
..+.+.++||.=.... .+...+...... .....+|+|+|. ++.-.- ..+.+.+
T Consensus 36 ~~~~~~N~g~~G~t~~--~~~~r~~~~~~~--~~~~~~d~V~i~-~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (204)
T cd04506 36 KKVTVQNFGVSGDRSD--QLLKRLKTKKVQ--KELKKADVITIT-IGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKK 110 (204)
T ss_pred CceEEEeecccchhHH--HHHHHHhcchhh--hhcccCCEEEEE-ecchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 4688999999766553 344554433221 123478999883 232110 1234456
Q ss_pred HHHHHhhC--CCCEEEEccc
Q 012929 117 LIAKCKSA--KKPLVVAGCV 134 (453)
Q Consensus 117 ~i~~~~~~--~~~vVvgGc~ 134 (453)
++.++++. +++||+.|.+
T Consensus 111 ~i~~ir~~~p~~~Ivv~~~~ 130 (204)
T cd04506 111 IFKEIRKLNPDAPIFLVGLY 130 (204)
T ss_pred HHHHHHHHCCCCeEEEEecC
Confidence 67777765 4567777643
No 370
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.91 E-value=3.6e+02 Score=23.96 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i 381 (453)
.+.+.++.+.+.+. |+.+..--..+.+.++.-.+.+..+++++++.+.+.+
T Consensus 111 ~~~l~~l~~~a~~~--gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 161 (213)
T PF01261_consen 111 AENLRELAEIAEEY--GVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGI 161 (213)
T ss_dssp HHHHHHHHHHHHHH--TSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEE
T ss_pred HHHHHHHHhhhhhh--cceEEEecccCccccchhhHHHHHHHHhhcCCCcceE
Confidence 45677777788888 8888877666665555533466777778777655544
No 371
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.72 E-value=24 Score=25.73 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=8.8
Q ss_pred CCCCcccccc
Q 012929 202 CLGACTYCKT 211 (453)
Q Consensus 202 C~~~CsFC~~ 211 (453)
|.|-||||.-
T Consensus 25 CSfECTFC~~ 34 (57)
T PF06906_consen 25 CSFECTFCAD 34 (57)
T ss_pred EeEeCcccHH
Confidence 9999999973
No 372
>PRK05569 flavodoxin; Provisional
Probab=22.60 E-value=2e+02 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCeeeC---------CCCCCcEEEEeecccccc-h-HHHHHHHHHHHhh---CCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALTD---------NSEEADIWLINTCTVKSP-S-QSAMDTLIAKCKS---AKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~---------~~~~AD~viinTCtv~~~-a-~~~~~~~i~~~~~---~~~~vVvgGc~a~~ 137 (453)
+.++..|.+.|.++.- +..++|.++|-|.+.... . ...+...+++++. .|+++++-|.+.+.
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~ 95 (141)
T PRK05569 20 NTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWD 95 (141)
T ss_pred HHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCC
Confidence 4455555556865421 124689999977665432 1 1345566666542 46777776666554
No 373
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=22.47 E-value=1.3e+02 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEEEccccCCc
Q 012929 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVVAGCVPQGS 138 (453)
Q Consensus 82 L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVvgGc~a~~~ 138 (453)
+...|.-.-..+..||+.|| +-|++.+-...++.+-++. ..+| |-+|.|.-+.-
T Consensus 62 ~~RfG~~~r~SPRQaDvmIv-aGt~t~Kmap~lr~~YdQM--PePK~VIsMGsCa~~GG 117 (194)
T COG0377 62 LERFGEVPRASPRQADLMIV-AGTLTNKMAPALRRVYDQM--PEPKWVISMGSCANSGG 117 (194)
T ss_pred HHHhCcCCCCCcccccEEEE-eccchHHHHHHHHHHHHhC--CCCcEEEEecccccCCC
Confidence 33445333456789999999 6677764323332222222 2344 44788876543
No 374
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=22.43 E-value=4e+02 Score=26.64 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=38.0
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--------CCCHHHHHHHHHHhCC
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--------~~~l~~Ll~~l~~~i~ 271 (453)
+.+.|-+ ..+++.++++++.+.+.|++.|.|.+.. .. +|. ..-+..-++.+.+.+|
T Consensus 40 ~sMPG~~-r~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 40 SSMPGVY-RLSVDSLVEEAEELADLGIRAVILFGIP--EH-KDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred CCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEECCC--CC-CCCCcccccCCCChHHHHHHHHHHhCC
Confidence 3444444 4589999999999999999999998752 11 111 1134667777776665
No 375
>PRK04296 thymidine kinase; Provisional
Probab=22.34 E-value=2.4e+02 Score=25.61 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=32.8
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCc
Q 012929 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (453)
Q Consensus 93 ~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (453)
..+.|+|+|...-+.. ++.+.++++.++..|..||++|-..+..
T Consensus 76 ~~~~dvviIDEaq~l~--~~~v~~l~~~l~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 76 GEKIDCVLIDEAQFLD--KEQVVQLAEVLDDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCCCCEEEEEccccCC--HHHHHHHHHHHHHcCCeEEEEecCcccc
Confidence 3568999998875542 3447778888888999999999875543
No 376
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=22.29 E-value=99 Score=26.83 Aligned_cols=75 Identities=13% Similarity=0.329 Sum_probs=42.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHHH---HHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEccc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQ---LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCV 134 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~---L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~ 134 (453)
..++=.|||=+--.+|...+++. +...|...-..+.+||++++ .-|+|+.-....+.+-++.-+. +-|| +|-|.
T Consensus 32 ~SlWPltfGlaCCavEmmh~~a~RyD~DRyGvvfRaSPRQaD~iiv-AGTlTnKMAPalrkvYdQMPEp-r~VisMGsCa 109 (168)
T KOG1687|consen 32 GSLWPLTFGLACCAVEMMHLAAPRYDMDRYGVVFRASPRQADLIIV-AGTLTNKMAPALRKVYDQMPEP-RWVISMGSCA 109 (168)
T ss_pred cCccchhhhhHHHHHHHHHhccccccccccceeecCCCccccEEEE-eccchhhhcHHHHHHHhhCCCC-eeEEEecccc
Confidence 35666777754445555555443 33456555567889999999 5688876433444433333222 2244 66674
Q ss_pred c
Q 012929 135 P 135 (453)
Q Consensus 135 a 135 (453)
-
T Consensus 110 n 110 (168)
T KOG1687|consen 110 N 110 (168)
T ss_pred c
Confidence 3
No 377
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.27 E-value=3.1e+02 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=20.5
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
..||+||+-|=.+-..+ +..+-+.+++.+++++..
T Consensus 47 ~~aD~VIv~t~~vsH~~---~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNA---MWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CCCCEEEEEeCCcChHH---HHHHHHHHHHcCCcEEEE
Confidence 45799999664443322 222234456778887753
No 378
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.15 E-value=1.7e+02 Score=30.33 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEE--------EEEEeCCC--CCHHHHHHHHHHHHhcCCC
Q 012929 326 EYTLSDFRTVVDTLIELVPGMQIAT--------DIICGFPG--ETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~pgi~v~~--------~~IvG~Pg--ET~ed~~~tl~~i~~l~~~ 377 (453)
..+.+++.+.-+.+.++ |+.+.. +|..|.|+ +-.|.+.++++-+-+.++.
T Consensus 39 vW~~~~i~~~k~~ie~~--GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~ 98 (394)
T TIGR00695 39 VWEKEEIRKRKEYIESA--GLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIK 98 (394)
T ss_pred CCCHHHHHHHHHHHHHc--CCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 34555555555555555 555444 55555543 1223444455555555543
No 379
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=22.09 E-value=2.7e+02 Score=26.84 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=49.2
Q ss_pred cChhHHHHHHHHHHHcCCeee--CCCC-------CCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE--EccccCCc
Q 012929 70 HNQSDSEYMAGQLSAFGYALT--DNSE-------EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV--AGCVPQGS 138 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~--~~~~-------~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv--gGc~a~~~ 138 (453)
-|.+=....+..+.+.|-..+ +.++ -||.++||.=|.+....+.+...++.+.+.+++||+ -||.++..
T Consensus 15 TN~Vt~n~~AN~~LA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~ 94 (246)
T PF02110_consen 15 TNYVTANDVANALLAIGASPIMAEAPEEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKF 94 (246)
T ss_dssp --TTTHHHHHHHHHHCTSEEEE--STTTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHH
T ss_pred cccchhhhHHHHHHHcCCCccccCCHHHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHH
Confidence 366667778888888886543 3333 368999999988876666777778888889999886 48887765
Q ss_pred h
Q 012929 139 R 139 (453)
Q Consensus 139 ~ 139 (453)
.
T Consensus 95 R 95 (246)
T PF02110_consen 95 R 95 (246)
T ss_dssp H
T ss_pred H
Confidence 5
No 380
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=22.06 E-value=36 Score=29.74 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=26.8
Q ss_pred CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecc
Q 012929 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385 (453)
Q Consensus 345 gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~s 385 (453)
|+....|+|+|+++...++..+..++++...-..+.++.|.
T Consensus 60 GL~p~~DyIig~~~~~l~~~~~l~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 60 GLEPFFDYIIGIDGGLLDDEDDLFELVEANENKPLQLYVYN 100 (138)
T ss_dssp T--TTTEEEEEETTCE--STCHHHHHHHHTTTS-EEEEEEE
T ss_pred CccccccEEEEccceecCCHHHHHHHHHHcCCCcEEEEEEE
Confidence 77777899999998777766666777777655566666664
No 381
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.04 E-value=2e+02 Score=24.63 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=40.6
Q ss_pred CCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhh
Q 012929 67 GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL 141 (453)
Q Consensus 67 GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~ 141 (453)
|=..|.+|.......++..- + ...|.++|-| . +......++++++.|++|++.|......+++
T Consensus 77 ~~~~~~~D~~l~~d~~~~~~-~-----~~~d~ivLvS----g--D~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 77 GSGKKGVDVALAIDALELAY-K-----RRIDTIVLVS----G--DSDFVPLVERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred CCcccCccHHHHHHHHHHhh-h-----cCCCEEEEEE----C--CccHHHHHHHHHHcCCEEEEEccCccChHHH
Confidence 45678888887777665432 1 1456666622 2 2356777888989999998888763333444
No 382
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.97 E-value=7.7e+02 Score=24.78 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc-ChhHHHHHHHHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVL 299 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l~ 299 (453)
.++++.+++++.+++.|++.+.+- + |.+. ..-.+.++++.+.+. ....+++. .|-. ...+.+ ++.+.+
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~-~~~~~l 205 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQAL-ALARAF 205 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHH-HHHHHH
Confidence 378889999999999999988873 1 1111 122567777777664 34566666 3332 222222 222222
Q ss_pred hCCCCceeeecccCCCCHHHHHhhcCC
Q 012929 300 RHPCVYSFLHVPVQSGSDAVLSAMNRE 326 (453)
Q Consensus 300 ~~~~~~~~l~iglESgs~~vLk~m~R~ 326 (453)
.. -...++.=|+...+-+-++.+++.
T Consensus 206 ~~-~~~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 206 AD-EGVTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred HH-hCcchhhCCCChhhHHHHHHHHhh
Confidence 21 223466667766665666555544
No 383
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.65 E-value=5.5e+02 Score=24.97 Aligned_cols=14 Identities=0% Similarity=-0.142 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 012929 329 LSDFRTVVDTLIEL 342 (453)
Q Consensus 329 ~e~~~~~i~~lr~~ 342 (453)
.++..+..+.+.+.
T Consensus 82 ~~~~i~~a~~a~~~ 95 (292)
T PRK03170 82 TAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444444
No 384
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=21.57 E-value=4.2e+02 Score=26.49 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=38.6
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-----CCC---cCCCHHHHHHHHHHhCC
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD---IGVNLPILLNAIVAELP 271 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y-----g~d---~~~~l~~Ll~~l~~~i~ 271 (453)
+.+.|- ...+++.++++++.+.+.|++.|.|.+...... |.. ...-+.+-++.|.+.+|
T Consensus 40 ~smPG~-~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~p 106 (320)
T cd04824 40 DSLPGI-NRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFP 106 (320)
T ss_pred CCCCCc-eeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCC
Confidence 334443 455899999999999999999999987521111 111 11235677777777665
No 385
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.54 E-value=2.5e+02 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=45.1
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC--------------------CCCCcEEEEe--ecccccchHHHHHHHHHHHhhCCCC
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN--------------------SEEADIWLIN--TCTVKSPSQSAMDTLIAKCKSAKKP 127 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~--------------------~~~AD~viin--TCtv~~~a~~~~~~~i~~~~~~~~~ 127 (453)
.|..|-+.+...|+.-|..-..+ ..++|++++. +-+|-..++..++++++++++.|+.
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 37789999999999988543221 5789999985 2344445678899999999988776
Q ss_pred EEE
Q 012929 128 LVV 130 (453)
Q Consensus 128 vVv 130 (453)
|++
T Consensus 192 Il~ 194 (254)
T COG1121 192 VLM 194 (254)
T ss_pred EEE
Confidence 665
No 386
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.49 E-value=4.7e+02 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.+++.+++-++.+.+.|+..|.|-| ..+. -.+....+|++++.+.+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D-t~G~---l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD-MAGL---LTPKRAYELVKALKKKF 195 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-ccCC---cCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999875 3332 23456788888887764
No 387
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.40 E-value=2.5e+02 Score=27.37 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=41.3
Q ss_pred EEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc-------------chHHHHHHHHHHHhhCCCCE
Q 012929 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-------------PSQSAMDTLIAKCKSAKKPL 128 (453)
Q Consensus 62 ~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~-------------~a~~~~~~~i~~~~~~~~~v 128 (453)
-+.|.+--.|.-|++.|+ +.| ||+++++ +..|. .+.+.+.++.+.+++.++-|
T Consensus 150 gl~T~~yvf~~e~A~~M~----~AG---------aDiiv~H-~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~di 215 (268)
T PF09370_consen 150 GLFTTAYVFNEEQARAMA----EAG---------ADIIVAH-MGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDI 215 (268)
T ss_dssp T-EE--EE-SHHHHHHHH----HHT----------SEEEEE--SS----------S--HHHHHHHHHHHHHHHHCC-TT-
T ss_pred CCeeeeeecCHHHHHHHH----HcC---------CCEEEec-CCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCe
Confidence 345555556666766655 445 8999885 33321 12333444555556655533
Q ss_pred ---EEEccccCCchh-h----hcCC-ccEEEcCCChhHHH
Q 012929 129 ---VVAGCVPQGSRD-L----KELE-GVSIVGVQQIDRVV 159 (453)
Q Consensus 129 ---VvgGc~a~~~~e-~----~~~~-~d~vvG~~~~~~l~ 159 (453)
+-||+.++ |+ . +.-+ .+-++|....+++|
T Consensus 216 i~l~hGGPI~~--p~D~~~~l~~t~~~~Gf~G~Ss~ERlP 253 (268)
T PF09370_consen 216 IVLCHGGPIAT--PEDAQYVLRNTKGIHGFIGASSMERLP 253 (268)
T ss_dssp EEEEECTTB-S--HHHHHHHHHH-TTEEEEEESTTTTHHH
T ss_pred EEEEeCCCCCC--HHHHHHHHhcCCCCCEEecccchhhcc
Confidence 34777654 53 2 2334 34599998888888
No 388
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=21.21 E-value=8e+02 Score=24.23 Aligned_cols=84 Identities=8% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCceeeecccCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeE
Q 012929 303 CVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379 (453)
Q Consensus 303 ~~~~~l~iglESgs~~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i 379 (453)
.++..|.|.+=-..+.+.+. ++-. .+.+...++++.+++..+ +.++.-+=+|+. ++.+++.+.+..+.+.+.+.+
T Consensus 78 ~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g~~-~~~~~~~~~~~~l~~~G~~~i 155 (309)
T PF01207_consen 78 LGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLGWD-DSPEETIEFARILEDAGVSAI 155 (309)
T ss_dssp TT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESECT---CHHHHHHHHHHHHTT--EE
T ss_pred cCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccccc-cchhHHHHHHHHhhhcccceE
Confidence 34556666555556665532 1111 267889999999998744 888999999985 677788889999999999999
Q ss_pred EEEecccCC
Q 012929 380 HISQFYPRP 388 (453)
Q Consensus 380 ~i~~~sp~p 388 (453)
.++.=++..
T Consensus 156 ~vH~Rt~~q 164 (309)
T PF01207_consen 156 TVHGRTRKQ 164 (309)
T ss_dssp EEECS-TTC
T ss_pred EEecCchhh
Confidence 998876533
No 389
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=21.11 E-value=4.6e+02 Score=25.08 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=38.3
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv 130 (453)
+..+...|+.++..+.+.+...+.+. ..++|+++++.+.........+..+++.+++.+.+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (289)
T cd01164 100 ETEINEPGPEISEEELEALLEKLKAL-------LKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVIL 163 (289)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEE
Confidence 34445568777766666555544321 24699999976544222223455667777777777764
No 390
>PRK07116 flavodoxin; Provisional
Probab=21.09 E-value=5.6e+02 Score=22.36 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=22.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccc
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~ 134 (453)
.++|.|+|-+-+........+...+++..-.++++++-+|+
T Consensus 75 ~~~D~Iiig~Pv~~~~~p~~v~~fl~~~~l~~k~v~~f~T~ 115 (160)
T PRK07116 75 AEYDVIFLGFPIWWYVAPRIINTFLESYDFSGKTVIPFATS 115 (160)
T ss_pred HhCCEEEEECChhccccHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 45788888443333333344556666654456666655554
No 391
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=21.09 E-value=7.7e+02 Score=23.95 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=34.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCc--CCCHHHHHHHHHHhCC
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI--GVNLPILLNAIVAELP 271 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~-d~~~yg~d~--~~~l~~Ll~~l~~~i~ 271 (453)
.--.++++|++++....+.|..-+.+.-- +.. |... ...+.+.++.|.+..+
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~--G~~s~d~~~~~e~~~~IR~~~p 74 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDED--GRPSLDPELYAEVVEAIRAACP 74 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TTT--S-EE--HHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC--CCcCCCHHHHHHHHHHHHHHCC
Confidence 45668999999999999999998888764 221 2221 1356777788877643
No 392
>PRK09267 flavodoxin FldA; Validated
Probab=20.95 E-value=5e+02 Score=22.76 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCcEEEEeecccc-cchHHHHHHHHHHHhh---CCCCEEEEccc
Q 012929 95 EADIWLINTCTVK-SPSQSAMDTLIAKCKS---AKKPLVVAGCV 134 (453)
Q Consensus 95 ~AD~viinTCtv~-~~a~~~~~~~i~~~~~---~~~~vVvgGc~ 134 (453)
++|.++|-|++.- ......+...++.++. .|+++.+-||.
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence 4788888665542 2222234444444322 35667666765
No 393
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=20.93 E-value=4.4e+02 Score=24.90 Aligned_cols=134 Identities=17% Similarity=0.297 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCc--EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 227 v~Ei~~l~~~G~~--eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
..|++...+.|+. .|.|.+.. . . .+.|+...+. +...+-+. . .++++.+..+.....+
T Consensus 51 ~~El~~a~~~g~~~~~Ii~~gp~-----k----~-~~~l~~a~~~----~~~~i~vD-----s-~~el~~l~~~~~~~~v 110 (251)
T PF02784_consen 51 PGELELALKAGFPPDRIIFTGPG-----K----S-DEELEEAIEN----GVATINVD-----S-LEELERLAELAPEARV 110 (251)
T ss_dssp HHHHHHHHHTTTTGGGEEEECSS------------HHHHHHHHHH----TESEEEES-----S-HHHHHHHHHHHCTHEE
T ss_pred ccchHHHHhhhccccceeEecCc-----c----c-HHHHHHHHhC----CceEEEeC-----C-HHHHHHHhccCCCcee
Confidence 3678887778764 58887631 1 1 3444444442 33333332 1 2344455656554445
Q ss_pred ceeeecccCCCCHHHHHh---hcC-CCCHHH-HHHHHHHHHHhCCCcE-EEEEEEEeCCCCCHHHHHHHH----HHHHhc
Q 012929 305 YSFLHVPVQSGSDAVLSA---MNR-EYTLSD-FRTVVDTLIELVPGMQ-IATDIICGFPGETDEDFNQTV----NLIKEY 374 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~---m~R-~~t~e~-~~~~i~~lr~~~pgi~-v~~~~IvG~PgET~ed~~~tl----~~i~~l 374 (453)
.-++..++..++...+.. -.| |.+.++ +.++++.+++. ++. +...+-+|--..+.+.+.+.+ +++.++
T Consensus 111 ~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~~~~~~--~l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~ 188 (251)
T PF02784_consen 111 GLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALERAKEL--GLRLVGLHFHVGSQILDAEAFRQAIERLLDLAEEL 188 (251)
T ss_dssp EEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHHHHHHT--TEEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHHhhccc--eEEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhh
Confidence 567777766655544432 123 667788 99999999998 755 445777776445555554443 344433
Q ss_pred ----C---CCeEEEE
Q 012929 375 ----K---FPQVHIS 382 (453)
Q Consensus 375 ----~---~~~i~i~ 382 (453)
+ +..+.+-
T Consensus 189 ~~~~g~~~l~~idiG 203 (251)
T PF02784_consen 189 KEELGFEDLEFIDIG 203 (251)
T ss_dssp HHHTTTTT-SEEEEE
T ss_pred ccccccccccEEEee
Confidence 2 6677775
No 394
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.85 E-value=7.6e+02 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
.+++.+++-++.+.+.|+..|.+.| .+ |.-.+..+.++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~D-T~---G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVD-SF---GSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec-CC---CCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999876 33 3333457788888887655
No 395
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.84 E-value=2.8e+02 Score=21.38 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 72 QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.-|.|.++..++..|+..+--. + .....+.++++++.++ .|..++++
T Consensus 19 s~DGe~ia~~~~~~G~~~iRGS-----------s-~rgg~~Alr~~~~~lk-~G~~~~it 65 (74)
T PF04028_consen 19 SRDGELIARVLERFGFRTIRGS-----------S-SRGGARALREMLRALK-EGYSIAIT 65 (74)
T ss_pred CcCHHHHHHHHHHcCCCeEEeC-----------C-CCcHHHHHHHHHHHHH-CCCeEEEe
Confidence 3599999999999998755321 1 2224556788888876 56555544
No 396
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=20.82 E-value=4.3e+02 Score=20.91 Aligned_cols=61 Identities=8% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+.+.+..+.+++..|+..+..-++-+ +.-++.+.++-+.+.+.+.+.+.+|.-.+|.-..
T Consensus 15 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 75 (101)
T cd03416 15 AEALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVK 75 (101)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCcccc
Confidence 346777788888876666666666643 2346666788888888999999999999998664
No 397
>PLN02615 arginase
Probab=20.81 E-value=8.7e+02 Score=24.46 Aligned_cols=155 Identities=15% Similarity=0.245 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhH-------HHHH
Q 012929 223 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 294 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~-G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~-------~l~~ 294 (453)
.+.|-+-++.+.+. +..-|.|-|++..+|+ .++.+.+... ....-+.|. .|++.-++ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~---------~iral~~~~~-~~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISYP---------VVRAVSEKLG-GPVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhHH---------HHHHHHHHhC-CCeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 44444555555664 5556777676665552 4445543321 022334443 33322111 1111
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCCC----CHHH---HHHHHHHHHHh--CCCcEEEEEE--E-------EeC
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSD---FRTVVDTLIEL--VPGMQIATDI--I-------CGF 356 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~----t~e~---~~~~i~~lr~~--~pgi~v~~~~--I-------vG~ 356 (453)
+..+++....-+.+++|+++.+.+-.+.+++.. +..+ ..+.++.++.. .+.+.++.|+ + +|.
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 333443322347899999999877666554421 2222 34455555431 1224555443 3 344
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCeEEEEecccCCC
Q 012929 357 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389 (453)
Q Consensus 357 P---gET~ed~~~tl~~i~~l~~~~i~i~~~sp~pG 389 (453)
| |=|..++.+.++.+.. ++--+-+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 4 3566777666666644 555667788888755
No 398
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=20.80 E-value=6.8e+02 Score=23.18 Aligned_cols=135 Identities=9% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+.++-++.+.+.|++++.+++.+...-|.. .-.++++++.+... ..+.++ -..... +++..+.. .+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~---~~~~~i~~i~~~~~----~pi~~g-gGI~~~----ed~~~~~~--~G 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGP---VNLPVIKKIVRETG----VPVQVG-GGIRSL----EDVEKLLD--LG 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcHHHHHHHHHhcC----CCEEEe-CCcCCH----HHHHHHHH--cC
Confidence 344455556678999999998665433432 22567788776432 223332 111111 22444444 24
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEE------eCCCCCHHHHHHHHHHHHhcCCCe
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFPQ 378 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~Iv------G~PgET~ed~~~tl~~i~~l~~~~ 378 (453)
+..+-+|-.... +.+.+.++++.+... .+.++.|+-- |.-..+..+..+.++.+.+.+.+.
T Consensus 95 a~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ 161 (230)
T TIGR00007 95 VDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEG 161 (230)
T ss_pred CCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCE
Confidence 455555533322 124445554444321 3556666542 221122345556677778888888
Q ss_pred EEEEeccc
Q 012929 379 VHISQFYP 386 (453)
Q Consensus 379 i~i~~~sp 386 (453)
+.+...+.
T Consensus 162 ii~~~~~~ 169 (230)
T TIGR00007 162 IIYTDISR 169 (230)
T ss_pred EEEEeecC
Confidence 87776553
No 399
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=20.67 E-value=16 Score=31.54 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEccccCC
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQG 137 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc~a~~ 137 (453)
.++|+.+| +=+++... ....+.+++++++-+.|| +|-|....
T Consensus 44 ~~~diliV-eG~v~~~~-~~~~e~~~~~~~~a~~vIAvGtCA~~G 86 (131)
T PF01058_consen 44 EEADILIV-EGSVPRNM-EEALEWLKELRPKAKAVIAVGTCASFG 86 (131)
T ss_dssp TTTEEEEE-ESBEETGG-EEHHHHHHHHHGCSSEEEEEHHHHHH-
T ss_pred cCceEEEE-EeeccCCc-hHHHHHHHHHccCCceeEcCCCccccC
Confidence 48999999 55664433 335666777765544444 67776543
No 400
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.65 E-value=2.3e+02 Score=24.82 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-EEcc
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (453)
.+-|++++-|-+=.+ ..+.+.++.+|++|.++| +++.
T Consensus 78 ~~~D~~i~iS~sG~t---~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 78 QKGDVLLGISTSGNS---KNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCCEEEEEcCCCCC---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 344777775543322 356788888999997755 6664
No 401
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.50 E-value=4.5e+02 Score=26.36 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=38.2
Q ss_pred ccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--------CCCHHHHHHHHHHhCC
Q 012929 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (453)
Q Consensus 212 ~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--------~~~l~~Ll~~l~~~i~ 271 (453)
+.+-|- ...+++.++++++.+.+.|++.|.|.+.. .. +|. ..-+..-++.+.+.+|
T Consensus 50 ~smPg~-~r~sid~l~~~~~~~~~~Gi~~v~lFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 50 STLPGI-SRLPESALADEIERLYALGIRYVMPFGIS--HH-KDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred CCCCCc-ceECHHHHHHHHHHHHHcCCCEEEEeCCC--CC-CCCCcccccCCCChHHHHHHHHHHHCC
Confidence 344443 44589999999999999999999988752 11 221 1235667777777665
No 402
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=20.48 E-value=6.3e+02 Score=22.67 Aligned_cols=46 Identities=11% Similarity=0.280 Sum_probs=29.3
Q ss_pred eeecccCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEE-EEEEEeCCC
Q 012929 307 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPG 358 (453)
Q Consensus 307 ~l~iglESgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~-~~~IvG~Pg 358 (453)
.+++-+.++. .|+| |.+.+++.++++.+++. |++.+. ..+-+|...
T Consensus 108 ~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~-~~l~l~Gl~~H~~~~~ 155 (211)
T cd06808 108 RVLLRIDTGD-----ENGKFGVRPEELKALLERAKEL-PHLRLVGLHTHFGSAD 155 (211)
T ss_pred eEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEEEecCCCC
Confidence 4566666664 6777 67888888888888765 445543 344445433
No 403
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.45 E-value=7.6e+02 Score=24.10 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
+++.+++-++.+.+.|++.|.|.| .+ |.-.+..+.++++.+.+.++
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~D-T~---G~~~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPD-TL---GILSPFETYTYISDMVKRYP 190 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CC---CCCCHHHHHHHHHHHHhhCC
Confidence 678899999999999999999876 33 33234567888888876553
No 404
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.40 E-value=4.6e+02 Score=21.36 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
.+.+.+..+.+++..+ ..+.+.++=|.| ++.+.++.+.+-+...+.+.+|.-.+|.=+.
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE~~P-----~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~ 73 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVEGYP-----GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAH 73 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEehhheecccch
Confidence 4566777777776633 445555554544 5778888888889999999999988887555
No 405
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.32 E-value=7.8e+02 Score=23.74 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecccCCCCHhHHHHHHHHHHHH
Q 012929 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLL 404 (453)
Q Consensus 361 ~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~~~R~~~l~~~~ 404 (453)
.|+.++.++.+++++++.+.+. -|.|+ .+|.+.+.+..
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lv----ap~t~--~eri~~i~~~s 165 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLV----APTTT--DERLKKIASHA 165 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe----CCCCC--HHHHHHHHHhC
Confidence 3555566666666666655322 23343 35666666655
No 406
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=20.29 E-value=4.5e+02 Score=21.45 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
.+.+.+..+.+++..++..+.+-|+-. +.-++.+.++.+.+-+...+.+.+|.-.+|--
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAA----TRPSLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecC----CCCCHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 456777888887776656666666642 23367788888888889999999999999954
No 407
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=20.24 E-value=3e+02 Score=28.58 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCC-cEEEEEEEEeCCCC
Q 012929 314 SGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPG-MQIATDIICGFPGE 359 (453)
Q Consensus 314 Sgs~~vLk~m~R-~~t~e~~~~~i~~lr~~~pg-i~v~~~~IvG~PgE 359 (453)
..+++-++.+++ +.+...+.+++++++++ + -.|..|++..+|.+
T Consensus 66 ~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~--qp~aIgLDi~r~~P~~ 111 (400)
T COG4252 66 AIDEQDLESLGQWPWPRAALARLLDKLAAA--QPRAIGLDIYRDLPSS 111 (400)
T ss_pred EecHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCcEEEEEEeecCCCC
Confidence 357889999998 78999999999999999 6 46899999999975
No 408
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.20 E-value=1.1e+03 Score=25.19 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCCceE-E----EEec-CCcChhHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGSTML-R----IGMT-NPPFILEHL 292 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~--yg~d~~~~l~~Ll~~l~~~i~~~~~~~i-r----~~~~-~p~~i~~~l 292 (453)
...++++.-+..+-+.|+..|.+.|.-++. |+. ...+-.+.|+.+.+.++......+ | +++. .|+++.+..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 456666666666767788888887654333 221 112336677777776651111111 1 1222 244444333
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE-EeCCCCCHHHHHHHHHHH
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQTVNLI 371 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I-vG~PgET~ed~~~tl~~i 371 (453)
+....+ .+...+-+. . .+| ..+.....++.+++. |..+...+. .+-|-.|.+-+.+..+.+
T Consensus 111 --v~~a~~--~Gidi~Rif-d--------~ln---d~~n~~~ai~~ak~~--G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 111 --ISLSAQ--NGIDVFRIF-D--------ALN---DPRNIQQALRAVKKT--GKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred --HHHHHH--CCCCEEEEc-c--------cCC---CHHHHHHHHHHHHHc--CCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 222222 222222221 1 222 466777788888887 755432222 235667777777777777
Q ss_pred HhcCCCeEEE
Q 012929 372 KEYKFPQVHI 381 (453)
Q Consensus 372 ~~l~~~~i~i 381 (453)
.+++.+.+.+
T Consensus 173 ~~~Gad~I~I 182 (468)
T PRK12581 173 VEMGADSICI 182 (468)
T ss_pred HHcCCCEEEE
Confidence 7777766554
Done!