Query 012929
Match_columns 453
No_of_seqs 441 out of 2296
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 9.2E-46 3.1E-50 366.2 26.7 250 191-448 3-272 (304)
2 1olt_A Oxygen-independent copr 99.9 1.1E-24 3.8E-29 226.7 17.2 192 191-393 52-251 (457)
3 3t7v_A Methylornithine synthas 99.9 2.1E-22 7E-27 202.5 18.4 187 192-393 61-248 (350)
4 3iix_A Biotin synthetase, puta 99.9 1.6E-21 5.5E-26 195.6 20.5 185 192-393 53-239 (348)
5 1r30_A Biotin synthase; SAM ra 99.8 6.8E-20 2.3E-24 185.5 21.8 184 192-393 65-256 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 2.9E-15 9.8E-20 149.7 22.5 184 192-393 14-205 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 5.7E-14 1.9E-18 132.6 17.5 175 196-391 23-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.6 6E-14 2E-18 140.3 17.4 178 196-391 74-281 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.3 5E-12 1.7E-16 124.5 11.3 175 193-392 52-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.3 6.4E-11 2.2E-15 121.3 19.6 181 190-393 113-301 (416)
11 3rfa_A Ribosomal RNA large sub 99.2 3.7E-10 1.3E-14 114.5 15.7 195 191-404 114-334 (404)
12 4fhd_A Spore photoproduct lyas 97.9 9.2E-05 3.1E-09 73.8 12.2 164 195-373 110-282 (368)
13 2yxb_A Coenzyme B12-dependent 97.3 0.002 7E-08 56.7 11.7 106 58-165 18-142 (161)
14 3can_A Pyruvate-formate lyase- 97.1 0.0082 2.8E-07 53.3 13.5 131 240-391 6-141 (182)
15 1ccw_A Protein (glutamate muta 96.2 0.024 8.2E-07 48.3 9.4 94 59-154 4-121 (137)
16 1req_A Methylmalonyl-COA mutas 95.5 0.058 2E-06 58.1 10.7 95 58-154 596-708 (727)
17 2xij_A Methylmalonyl-COA mutas 95.2 0.086 2.9E-06 57.0 10.9 95 58-154 604-716 (762)
18 1y80_A Predicted cobalamin bin 94.4 0.17 5.7E-06 46.1 9.2 88 58-149 88-194 (210)
19 2i2x_B MTAC, methyltransferase 94.2 0.44 1.5E-05 44.8 12.0 103 58-166 123-242 (258)
20 1ydn_A Hydroxymethylglutaryl-C 93.6 1.3 4.3E-05 42.4 14.4 164 219-400 21-193 (295)
21 1xrs_B D-lysine 5,6-aminomutas 92.6 0.52 1.8E-05 44.5 9.5 94 58-154 120-243 (262)
22 2cw6_A Hydroxymethylglutaryl-C 92.3 1.5 5.2E-05 42.0 12.7 162 219-400 22-194 (298)
23 3kp1_A D-ornithine aminomutase 91.6 0.4 1.4E-05 50.4 8.0 93 59-154 603-720 (763)
24 2ftp_A Hydroxymethylglutaryl-C 91.4 9.2 0.00031 36.5 17.2 162 219-400 25-197 (302)
25 3ezx_A MMCP 1, monomethylamine 90.5 0.89 3.1E-05 41.5 8.5 77 58-136 92-188 (215)
26 1req_B Methylmalonyl-COA mutas 90.0 0.36 1.2E-05 51.3 6.1 101 58-164 509-628 (637)
27 1ydo_A HMG-COA lyase; TIM-barr 88.0 7.5 0.00026 37.3 13.5 156 218-393 22-187 (307)
28 3bul_A Methionine synthase; tr 87.8 1.5 5E-05 46.2 8.8 78 58-137 98-191 (579)
29 1eiw_A Hypothetical protein MT 87.1 7 0.00024 31.6 10.7 100 62-166 7-108 (111)
30 3ewb_X 2-isopropylmalate synth 82.7 9.6 0.00033 36.3 11.2 157 218-393 21-180 (293)
31 3ble_A Citramalate synthase fr 77.4 29 0.001 33.5 13.0 144 219-382 36-189 (337)
32 1nvm_A HOA, 4-hydroxy-2-oxoval 76.6 35 0.0012 33.0 13.3 140 219-383 25-170 (345)
33 3rmj_A 2-isopropylmalate synth 73.7 17 0.00059 35.8 10.3 147 218-382 28-177 (370)
34 3ivs_A Homocitrate synthase, m 73.6 21 0.00071 35.9 10.9 143 218-382 55-200 (423)
35 3eeg_A 2-isopropylmalate synth 69.4 14 0.00048 35.7 8.4 145 219-381 23-170 (325)
36 3l5o_A Uncharacterized protein 68.0 3.1 0.0001 39.3 3.2 54 94-151 185-238 (270)
37 2h1q_A Hypothetical protein; Z 65.2 5.3 0.00018 37.7 4.2 55 94-152 185-239 (270)
38 2yci_X 5-methyltetrahydrofolat 64.1 42 0.0014 31.4 10.3 142 218-375 28-193 (271)
39 3i9v_6 NADH-quinone oxidoreduc 63.7 1.8 6.2E-05 38.2 0.6 73 59-136 34-114 (181)
40 2ztj_A Homocitrate synthase; ( 62.1 70 0.0024 31.4 12.0 141 219-382 20-164 (382)
41 1rqb_A Transcarboxylase 5S sub 59.9 1.6E+02 0.0055 30.4 14.6 141 220-382 43-195 (539)
42 1aj0_A DHPS, dihydropteroate s 58.5 49 0.0017 31.2 9.7 139 218-374 32-207 (282)
43 3npg_A Uncharacterized DUF364 54.3 7.6 0.00026 36.1 3.2 64 95-162 164-230 (249)
44 1tx2_A DHPS, dihydropteroate s 53.8 53 0.0018 31.2 9.1 140 219-374 58-226 (297)
45 3inp_A D-ribulose-phosphate 3- 51.3 86 0.0029 28.8 9.9 131 218-390 34-169 (246)
46 3fst_A 5,10-methylenetetrahydr 50.1 78 0.0027 30.1 9.7 126 219-367 92-223 (304)
47 2nx9_A Oxaloacetate decarboxyl 48.7 2.3E+02 0.0077 28.6 15.0 140 220-382 26-178 (464)
48 1eye_A DHPS 1, dihydropteroate 46.0 1.4E+02 0.0049 27.8 10.7 138 219-374 24-199 (280)
49 3f6c_A Positive transcription 44.8 95 0.0033 24.0 8.3 96 70-169 9-121 (134)
50 3eod_A Protein HNR; response r 44.1 1.1E+02 0.0037 23.6 8.6 102 59-168 8-126 (130)
51 3rht_A (gatase1)-like protein; 42.7 35 0.0012 31.8 5.8 77 57-136 3-91 (259)
52 2qxy_A Response regulator; reg 42.1 1.2E+02 0.0042 23.7 8.9 94 70-169 12-122 (142)
53 3lpe_B DNA-directed RNA polyme 41.8 7.6 0.00026 27.7 0.8 29 195-224 9-37 (59)
54 4e38_A Keto-hydroxyglutarate-a 41.7 2E+02 0.0069 26.0 11.4 122 218-389 40-161 (232)
55 3lte_A Response regulator; str 41.5 1.2E+02 0.0041 23.3 8.4 103 59-169 7-126 (132)
56 1jeo_A MJ1247, hypothetical pr 41.2 84 0.0029 26.5 7.8 71 59-134 41-119 (180)
57 3snk_A Response regulator CHEY 39.5 93 0.0032 24.3 7.4 103 58-168 14-133 (135)
58 3ctl_A D-allulose-6-phosphate 39.1 2.2E+02 0.0074 25.7 12.1 130 219-386 8-139 (231)
59 1m3s_A Hypothetical protein YC 38.6 82 0.0028 26.8 7.3 70 59-133 38-115 (186)
60 3lmz_A Putative sugar isomeras 38.4 2.1E+02 0.0073 25.4 10.5 41 328-376 87-127 (257)
61 3kto_A Response regulator rece 38.2 1.2E+02 0.0041 23.6 7.9 104 59-168 7-126 (136)
62 1tqj_A Ribulose-phosphate 3-ep 37.7 2.2E+02 0.0076 25.4 10.5 132 220-387 13-146 (230)
63 3sho_A Transcriptional regulat 36.8 1E+02 0.0036 26.1 7.7 70 59-133 40-123 (187)
64 2fz5_A Flavodoxin; alpha/beta 36.4 32 0.0011 27.6 4.0 61 76-136 18-91 (137)
65 3oq0_A DBF4, protein DNA52; DD 36.2 48 0.0016 28.1 4.9 71 59-129 25-103 (151)
66 3ovp_A Ribulose-phosphate 3-ep 35.9 1.5E+02 0.005 26.7 8.8 104 218-353 11-120 (228)
67 2dqw_A Dihydropteroate synthas 35.7 1.3E+02 0.0044 28.4 8.6 138 219-374 47-219 (294)
68 5nul_A Flavodoxin; electron tr 35.4 43 0.0015 27.1 4.7 62 76-137 17-91 (138)
69 4dgh_A Sulfate permease family 34.4 1.7E+02 0.0059 23.2 8.4 73 60-139 20-95 (130)
70 3hdv_A Response regulator; PSI 34.3 1.6E+02 0.0054 22.7 9.3 104 58-169 7-128 (136)
71 4e5v_A Putative THUA-like prot 33.5 1.7E+02 0.0058 27.3 9.1 70 59-130 5-91 (281)
72 4dad_A Putative pilus assembly 33.2 1.8E+02 0.006 22.9 8.4 103 58-168 20-141 (146)
73 2rdm_A Response regulator rece 32.7 1.6E+02 0.0056 22.4 10.9 95 70-169 13-124 (132)
74 2nly_A BH1492 protein, diverge 32.7 2.5E+02 0.0085 25.7 9.8 98 276-376 28-129 (245)
75 1f6y_A 5-methyltetrahydrofolat 32.7 2.1E+02 0.0071 26.3 9.4 140 218-373 19-185 (262)
76 3lua_A Response regulator rece 32.3 1.8E+02 0.006 22.6 9.9 104 59-169 5-128 (140)
77 3jte_A Response regulator rece 32.2 1.8E+02 0.0061 22.7 9.0 94 70-168 11-123 (143)
78 1ydo_A HMG-COA lyase; TIM-barr 32.1 3.2E+02 0.011 25.6 11.0 54 221-281 154-207 (307)
79 2j48_A Two-component sensor ki 31.7 1.5E+02 0.0052 21.7 7.6 89 71-165 10-115 (119)
80 2q5c_A NTRC family transcripti 31.3 51 0.0018 29.0 4.7 87 59-166 95-181 (196)
81 2vp8_A Dihydropteroate synthas 31.0 73 0.0025 30.5 6.0 145 219-374 60-239 (318)
82 1vim_A Hypothetical protein AF 30.5 1E+02 0.0035 26.8 6.6 70 59-133 48-125 (200)
83 4f54_A Uncharacterized protein 30.3 40 0.0014 30.1 3.8 25 77-101 64-88 (197)
84 3rr1_A GALD, putative D-galact 30.2 3.5E+02 0.012 26.4 11.2 100 221-325 124-226 (405)
85 2plj_A Lysine/ornithine decarb 30.2 2.4E+02 0.0082 27.7 10.0 114 227-366 109-227 (419)
86 3hzh_A Chemotaxis response reg 29.9 2.1E+02 0.0073 22.8 9.4 100 58-165 36-154 (157)
87 3i42_A Response regulator rece 29.8 1.8E+02 0.0062 22.0 8.3 94 70-167 11-121 (127)
88 2y5s_A DHPS, dihydropteroate s 29.7 2.3E+02 0.008 26.6 9.3 139 219-375 41-217 (294)
89 1yg6_A ATP-dependent CLP prote 29.6 72 0.0025 27.9 5.4 73 63-139 28-100 (193)
90 2qr3_A Two-component system re 29.6 1.9E+02 0.0066 22.2 8.1 97 70-169 11-127 (140)
91 2ftp_A Hydroxymethylglutaryl-C 29.6 3.5E+02 0.012 25.2 13.6 83 220-313 155-237 (302)
92 3f6p_A Transcriptional regulat 29.4 1.8E+02 0.0063 21.9 9.7 92 71-166 11-117 (120)
93 2xhz_A KDSD, YRBH, arabinose 5 29.0 1.4E+02 0.0047 25.2 7.1 69 60-133 51-132 (183)
94 1srr_A SPO0F, sporulation resp 28.7 1.9E+02 0.0064 21.8 8.1 94 71-168 12-121 (124)
95 1rqb_A Transcarboxylase 5S sub 28.7 4.1E+02 0.014 27.2 11.6 124 222-374 173-296 (539)
96 3vnd_A TSA, tryptophan synthas 28.5 3.5E+02 0.012 24.9 11.5 131 259-403 5-170 (267)
97 2xvy_A Chelatase, putative; me 28.3 1.1E+02 0.0038 27.9 6.8 57 329-390 25-93 (269)
98 2yva_A DNAA initiator-associat 27.9 1.2E+02 0.0042 25.9 6.7 70 59-133 42-145 (196)
99 1x92_A APC5045, phosphoheptose 27.5 83 0.0028 27.1 5.5 70 59-133 46-149 (199)
100 3apt_A Methylenetetrahydrofola 27.0 97 0.0033 29.4 6.1 115 219-356 81-208 (310)
101 3f6r_A Flavodoxin; FMN binding 27.0 1.1E+02 0.0036 24.9 5.8 76 58-133 1-93 (148)
102 2h9a_B CO dehydrogenase/acetyl 26.7 4.1E+02 0.014 25.1 10.9 138 224-373 74-229 (310)
103 3tr9_A Dihydropteroate synthas 26.5 4.2E+02 0.014 25.1 12.7 136 219-371 44-221 (314)
104 2nx9_A Oxaloacetate decarboxyl 25.3 5.3E+02 0.018 25.8 13.3 122 222-374 156-277 (464)
105 1qkk_A DCTD, C4-dicarboxylate 25.3 2.5E+02 0.0087 22.2 9.3 93 70-167 11-120 (155)
106 3crn_A Response regulator rece 25.2 2.3E+02 0.0079 21.7 8.1 94 70-167 11-120 (132)
107 4gud_A Imidazole glycerol phos 25.0 62 0.0021 28.4 4.2 70 59-135 3-81 (211)
108 2kln_A Probable sulphate-trans 24.8 2.2E+02 0.0076 22.5 7.3 78 59-139 14-94 (130)
109 7odc_A Protein (ornithine deca 24.4 5.1E+02 0.017 25.3 11.6 117 227-369 92-213 (424)
110 1ydn_A Hydroxymethylglutaryl-C 24.3 4.2E+02 0.014 24.4 19.6 70 193-282 137-206 (295)
111 2qgh_A Diaminopimelate decarbo 24.1 2.8E+02 0.0097 27.1 9.3 45 323-368 174-220 (425)
112 2a20_A Regulating synaptic mem 23.9 17 0.00057 25.8 0.0 17 197-213 19-35 (62)
113 3hly_A Flavodoxin-like domain; 23.9 2E+02 0.0069 23.8 7.1 59 76-136 19-93 (161)
114 2vef_A Dihydropteroate synthas 23.7 3.9E+02 0.013 25.3 9.7 62 219-285 28-95 (314)
115 3cuq_A Vacuolar-sorting protei 23.5 1.4E+02 0.0048 27.2 6.2 49 326-374 114-166 (234)
116 3ixl_A Amdase, arylmalonate de 23.1 4E+02 0.014 23.9 9.4 72 58-135 117-190 (240)
117 1h7n_A 5-aminolaevulinic acid 23.1 1.9E+02 0.0066 27.7 7.2 76 192-271 41-124 (342)
118 1dbw_A Transcriptional regulat 23.0 2.5E+02 0.0084 21.2 9.6 93 71-167 12-120 (126)
119 1f4p_A Flavodoxin; electron tr 22.9 1.1E+02 0.0038 24.7 5.1 59 77-135 20-94 (147)
120 1vzw_A Phosphoribosyl isomeras 22.7 4E+02 0.014 23.5 9.4 132 225-386 33-170 (244)
121 1oao_C CODH, carbon monoxide d 22.7 47 0.0016 35.1 3.1 52 82-137 141-192 (729)
122 3a10_A Response regulator; pho 22.3 2.4E+02 0.0081 20.8 10.1 89 71-164 10-113 (116)
123 2xed_A Putative maleate isomer 22.3 3.4E+02 0.012 24.9 8.9 73 58-136 146-219 (273)
124 1mxs_A KDPG aldolase; 2-keto-3 22.1 4.2E+02 0.014 23.6 10.1 44 219-271 33-76 (225)
125 4dik_A Flavoprotein; TM0755, e 22.0 1.5E+02 0.0052 29.2 6.8 63 75-137 283-364 (410)
126 3grc_A Sensor protein, kinase; 21.9 2.1E+02 0.0072 22.1 6.6 102 59-168 7-127 (140)
127 3ny7_A YCHM protein, sulfate t 21.7 2.6E+02 0.0089 21.8 7.0 72 60-139 17-91 (118)
128 3vni_A Xylose isomerase domain 21.7 2.2E+02 0.0075 25.7 7.5 143 226-382 19-182 (294)
129 3b6i_A Flavoprotein WRBA; flav 21.7 1.6E+02 0.0053 25.0 6.1 28 94-121 67-94 (198)
130 4dgf_A Sulfate transporter sul 21.6 1.3E+02 0.0045 24.2 5.3 72 60-138 23-97 (135)
131 2dgd_A 223AA long hypothetical 21.5 2.8E+02 0.0097 24.3 8.0 74 58-137 108-183 (223)
132 3e49_A Uncharacterized protein 21.4 4.1E+02 0.014 25.1 9.3 53 217-270 25-79 (311)
133 2cby_A ATP-dependent CLP prote 21.4 1.4E+02 0.0048 26.4 5.8 74 62-139 28-101 (208)
134 2cw6_A Hydroxymethylglutaryl-C 20.9 5E+02 0.017 24.0 14.3 54 221-281 153-206 (298)
135 1tmy_A CHEY protein, TMY; chem 20.9 2.6E+02 0.0089 20.7 8.6 90 71-164 11-117 (120)
136 2a5l_A Trp repressor binding p 20.9 82 0.0028 27.0 4.0 29 58-89 5-37 (200)
137 3mil_A Isoamyl acetate-hydroly 20.8 3.2E+02 0.011 23.3 8.2 70 60-136 43-124 (240)
138 3noy_A 4-hydroxy-3-methylbut-2 20.7 5.9E+02 0.02 24.7 13.5 139 220-373 42-201 (366)
139 3hv2_A Response regulator/HD d 20.6 2.4E+02 0.0084 22.2 6.9 102 58-167 14-132 (153)
140 1zlp_A PSR132, petal death pro 20.5 1.8E+02 0.0063 27.7 6.7 55 326-382 82-136 (318)
141 2rjn_A Response regulator rece 20.3 3.2E+02 0.011 21.5 8.6 101 59-167 8-125 (154)
142 1w5q_A Delta-aminolevulinic ac 20.3 2.2E+02 0.0074 27.3 6.9 75 192-271 38-120 (337)
143 1u5t_A Appears to BE functiona 20.1 79 0.0027 28.9 3.8 57 317-374 117-179 (233)
144 3etn_A Putative phosphosugar i 20.1 2.2E+02 0.0075 25.1 6.9 70 59-133 60-144 (220)
145 3fni_A Putative diflavin flavo 20.1 2.8E+02 0.0097 22.9 7.3 59 76-136 23-98 (159)
146 2pju_A Propionate catabolism o 20.0 1.2E+02 0.0041 27.4 5.0 86 59-166 107-192 (225)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=9.2e-46 Score=366.21 Aligned_cols=250 Identities=28% Similarity=0.463 Sum_probs=202.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 268 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~ 268 (453)
...++|++++||+++|+||.++..+|+.|++++++|++|++.+.+.|+++|.|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999998653 3579999999976
Q ss_pred hCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEE
Q 012929 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348 (453)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v 348 (453)
++ +..|+++.+++|..+++++ +..+.+.+.+|+++++|+||+|+++|+.|+|+++.+++.++++.+++++||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 44 6679999889999888876 666666666689999999999999999999999999999999999998889999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH-----------HHHHHHHHHHH--HHhhhhhcccC
Q 012929 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL-----------NLDSTELLSLL--FSNYKFTVMLI 415 (453)
Q Consensus 349 ~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~-----------~~R~~~l~~~~--~~~~~~~~~~~ 415 (453)
.++||+||||||+++|.+|++++++++++.+++++|+|+||||++ ++|.++|++++ .....+++++
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~- 236 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFV- 236 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999998 67888899998 2222223777
Q ss_pred CeEEEEEEeeeeCCCCeeEEecCCCeEE-----EEcCC
Q 012929 416 SILVKLHYFSLDDQRNVLFGMTKQFHLY-----LVVTH 448 (453)
Q Consensus 416 G~~~~vlve~~~~~~~~~~g~~~~y~~v-----~~~~~ 448 (453)
|++++||||+. +++.+.|||.+|.+| .++.+
T Consensus 237 g~~~~vl~e~~--~~~~~~g~~~~~~~~~dg~~~~~~~ 272 (304)
T 2qgq_A 237 GKKLKFLVEGK--EGKFLVGRTWTEAPEVDGVVFVRGK 272 (304)
T ss_dssp TCEEEEEEEEE--ETTEEEEEETTCCTTTSCCEEEESC
T ss_pred CCEEEEEEEec--CCCEEEEECCCCcEeccceEEEcCC
Confidence 99999999986 234789999999998 87643
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.92 E-value=1.1e-24 Score=226.72 Aligned_cols=192 Identities=16% Similarity=0.229 Sum_probs=156.2
Q ss_pred ceEEEEEeCCCCCCCccccccccccC---ccccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg---~~rsr~~e~Iv~Ei~~l~~~----G~~eI~l~~~d~~~yg~d~~~~l~~Ll 263 (453)
+...||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|.|.|.+.+.... ..+.+|+
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHHH
Confidence 456788887 6999999999875432 24567789999999987654 46678887754332221 3578888
Q ss_pred HHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
+.+.+.++......+++. ++|+.++++. +..+.+. ++++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 128 ~~i~~~~~~~~~~eitie-~~p~~l~~e~--l~~L~~~--G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~- 201 (457)
T 1olt_A 128 KLLRENFQFNADAEISIE-VDPREIELDV--LDHLRAE--GFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI- 201 (457)
T ss_dssp HHHHHHSCEEEEEEEEEE-ECSSSCCTHH--HHHHHHT--TCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCCCCcEEEEE-EccCcCCHHH--HHHHHHc--CCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 888775421123567774 7999888765 5555553 479999999999999999999999999999999999999
Q ss_pred CCcE-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 344 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 344 pgi~-v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+. +++|+|+|+||||.+++.+|++++.++++++++++.|+|.|||+++
T Consensus 202 -G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~ 251 (457)
T 1olt_A 202 -GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAA 251 (457)
T ss_dssp -TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGG
T ss_pred -CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhH
Confidence 997 9999999999999999999999999999999999999999999865
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.89 E-value=2.1e-22 Score=202.54 Aligned_cols=187 Identities=14% Similarity=0.183 Sum_probs=152.1
Q ss_pred eEEEEEeCCCCCCCccccccccccCc-cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~-~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (453)
..+.|.+|+||+++|.||.++...+. ...+++++|+++++.+.+.|+++|.|++.+...|..+ ...+.++++.+.+..
T Consensus 61 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~ 139 (350)
T 3t7v_A 61 LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEEL 139 (350)
T ss_dssp EEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHH
T ss_pred EEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhc
Confidence 34678999999999999998765432 2237999999999999999999999987553322101 135677888876543
Q ss_pred CCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEE
Q 012929 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350 (453)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~ 350 (453)
+ ..+. +++..++++. +..+.+ .++.++.+|+||+++++++.|+++++.+++.++++.+++. |+.+.+
T Consensus 140 ---~-i~i~---~s~g~~~~e~--l~~L~~--aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 206 (350)
T 3t7v_A 140 ---G-LPIM---ISPGLMDNAT--LLKARE--KGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVED 206 (350)
T ss_dssp ---C-SCEE---EECSSCCHHH--HHHHHH--TTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEE
T ss_pred ---C-ceEE---EeCCCCCHHH--HHHHHH--cCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEcc
Confidence 2 1222 3455566544 555555 3578999999999999999999999999999999999999 999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 351 ~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
++|+|+ |||.+++.++++++++++++.+.+++|.|.||||++
T Consensus 207 ~~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~ 248 (350)
T 3t7v_A 207 GILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLE 248 (350)
T ss_dssp EEEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTT
T ss_pred ceEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCc
Confidence 999999 999999999999999999999999999999999998
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.88 E-value=1.6e-21 Score=195.55 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=151.0
Q ss_pred eEEEEEeCCCCCCCccccccccccCcc--ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~--rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (453)
..+.|.+++||+++|.||..+...+.. ...++++|+++++.+.+.|++.|.|+|.....+.. ..+.++++.+.+.
T Consensus 53 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~ 129 (348)
T 3iix_A 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM 129 (348)
T ss_dssp EEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT
T ss_pred EEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc
Confidence 356789999999999999987655432 23699999999999999999999999865222321 3467777777542
Q ss_pred CCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEE
Q 012929 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~ 349 (453)
.+.+. +++..++++. +..+.. .++..+.+++||.++++++.++++.+.+++.+.++.+++. |+.+.
T Consensus 130 -------~~~i~-~s~g~l~~e~--l~~L~~--ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 195 (348)
T 3iix_A 130 -------GVAVT-LSLGEWPREY--YEKWKE--AGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETG 195 (348)
T ss_dssp -------SCEEE-EECCCCCHHH--HHHHHH--HTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEE
T ss_pred -------CceEE-EecCCCCHHH--HHHHHH--hCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeec
Confidence 22333 3344455544 444444 3457899999999999999999999999999999999999 99999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+++|+|+||||.+++.++++++++++++.+.+++|.|.||||++
T Consensus 196 ~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~ 239 (348)
T 3iix_A 196 AGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLA 239 (348)
T ss_dssp ECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTT
T ss_pred cceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcc
Confidence 99999999999999999999999999999999999999999998
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.84 E-value=6.8e-20 Score=185.48 Aligned_cols=184 Identities=15% Similarity=0.199 Sum_probs=147.6
Q ss_pred eEEEEEe-CCCCCCCcccccccccc--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 012929 192 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 265 (453)
Q Consensus 192 ~~~~i~i-srGC~~~CsFC~~~~~r--g--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~-~~~l~~Ll~~ 265 (453)
....|.+ ++||+++|.||.++... + +++.+++++|+++++.+.+.|++.|.|.+... ++... ...+.++++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~ 142 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQG 142 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHH
Confidence 3456776 99999999999987643 2 35678999999999999999999999987321 11111 1346677777
Q ss_pred HHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 012929 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 266 l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pg 345 (453)
+.+. +. .+ . +++..++++. +..+.. .++.++++++|| ++++++.|+++++.+++.+.++.+++. |
T Consensus 143 ik~~----g~-~i--~-~t~G~l~~e~--l~~L~~--aGvd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--G 207 (369)
T 1r30_A 143 VKAM----GL-EA--C-MTLGTLSESQ--AQRLAN--AGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--G 207 (369)
T ss_dssp HHHT----TS-EE--E-EECSSCCHHH--HHHHHH--HCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--H
T ss_pred HHHc----CC-eE--E-EecCCCCHHH--HHHHHH--CCCCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 7653 32 22 2 3455555544 455544 356899999999 999999999999999999999999999 9
Q ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEecccCCCCHhH
Q 012929 346 MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 346 i~v~~~~IvG~PgET~ed~~~tl~~i~~l~--~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++
T Consensus 208 i~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~ 256 (369)
T 1r30_A 208 IKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLA 256 (369)
T ss_dssp CEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTS
T ss_pred CeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCC
Confidence 99999999999 999999999999999997 889999999999999997
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.68 E-value=2.9e-15 Score=149.67 Aligned_cols=184 Identities=14% Similarity=0.217 Sum_probs=146.8
Q ss_pred eEEEEEeCCCCCCCccccccccc-------cCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~-------rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~ 264 (453)
....|.++++|+++|.||..+.. .++....+.+++.+.++.+.+.|++.|.|+|.+...+ .++.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 35578999999999999987652 1334668999999999999989999999998655443 36788888
Q ss_pred HHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 012929 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 343 (453)
Q Consensus 265 ~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~-t~e~~~~~i~~lr~~~ 343 (453)
.+.+. . +...+.+. +|...+.+. +..+.+ .++.+|.++++|.++++++.+++.. +.+++.+.++.++++
T Consensus 89 ~~~~~-~--~~~~i~i~-TNG~ll~~~---~~~L~~--~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQI-D--GIEDIGLT-TNGLLLKKH---GQKLYD--AGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTTC-T--TCCEEEEE-ECSTTHHHH---HHHHHH--HTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHhC-C--CCCeEEEE-eCccchHHH---HHHHHH--CCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 87642 2 33356664 676666543 333433 2457899999999999999999887 999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 344 pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|+|.++|+.+
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~ 205 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGW 205 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSB
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccc
Confidence 9888888777 7999999999999999999986 777889999998764
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.57 E-value=5.7e-14 Score=132.62 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=129.5
Q ss_pred EEeCCCCCCCcccccccccc--CccccCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCC-HHHHHHHHHHh
Q 012929 196 LPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAE 269 (453)
Q Consensus 196 i~isrGC~~~CsFC~~~~~r--g~~rsr~~e~Iv~Ei~~l~~~---G~~eI~l~~~d~~~yg~d~~~~-l~~Ll~~l~~~ 269 (453)
+.++.||+++|.||..+... +..+.+++++++++++.+.+. ++..|.|+|.+...+ .+ +.++++.+.+.
T Consensus 23 ~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~-----~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 23 ITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRACKKE 97 (245)
T ss_dssp EEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-----HHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC-----HHHHHHHHHHHHHc
Confidence 34567999999999987543 346778999999999987764 478899998655443 23 46777777542
Q ss_pred CCCCCCceEEEEecCCcC--hhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE
Q 012929 270 LPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347 (453)
Q Consensus 270 i~~~~~~~ir~~~~~p~~--i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~ 347 (453)
+. .+.+. ++... ..+. +..++.. +..+.++++|+++++++.+++. +.+++.+.++.++++ |+.
T Consensus 98 ----~~-~i~i~-Tng~~~~~~~~---~~~l~~~---~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~--g~~ 162 (245)
T 3c8f_A 98 ----GI-HTCLD-TNGFVRRYDPV---IDELLEV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANK--NVK 162 (245)
T ss_dssp ----TC-CEEEE-ECCCCCCCCHH---HHHHHHT---CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHH--TCC
T ss_pred ----CC-cEEEE-eCCCcCcCHHH---HHHHHHh---CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhc--CCE
Confidence 32 35554 34432 2333 3444442 4679999999999999999764 469999999999999 877
Q ss_pred EEEEEEEeCCC--CCHHHHHHHHHHHHhcCC-CeEEEEecccCCCCH
Q 012929 348 IATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGIQ 391 (453)
Q Consensus 348 v~~~~IvG~Pg--ET~ed~~~tl~~i~~l~~-~~i~i~~~sp~pGT~ 391 (453)
+...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.+++.
T Consensus 163 v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 163 VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 6666555 565 778999999999999995 889999999987754
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.56 E-value=6e-14 Score=140.27 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=129.7
Q ss_pred EEeC-CCCCCCcccccccccc-----CccccCCHHHHHHHHHHHHHC------C--------------CcEEEEe-ecCC
Q 012929 196 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-SEDT 248 (453)
Q Consensus 196 i~is-rGC~~~CsFC~~~~~r-----g~~rsr~~e~Iv~Ei~~l~~~------G--------------~~eI~l~-~~d~ 248 (453)
+..+ +||+++|.||..+... +..+..++++|++++....+. | ++.|.|+ +.+.
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3444 7999999999987442 145778999999998776431 2 4678886 5444
Q ss_pred CCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC---
Q 012929 249 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--- 325 (453)
Q Consensus 249 ~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R--- 325 (453)
..+ ..+.++++.+.+. +. .+.+. ++... ++. +..+...+..+..+.+++++.++++++.+++
T Consensus 154 ll~-----~~l~~ll~~~~~~----g~-~i~l~-TNG~~--~e~--l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~ 218 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHKR----GF-TTFIV-TNGTI--PER--LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI 218 (342)
T ss_dssp GGS-----TTHHHHHHHHHHT----TC-EEEEE-ECSCC--HHH--HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSS
T ss_pred cch-----hhHHHHHHHHHHC----CC-cEEEE-cCCCc--HHH--HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCc
Confidence 433 3688899888753 33 55554 45443 332 4445543223579999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
+++.+++.+.++.+++. |+.+...+++ +||++.+++.++++++++++++.+++.+|.|.|+++
T Consensus 219 ~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~ 281 (342)
T 2yx0_A 219 PDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR 281 (342)
T ss_dssp SCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC------
T ss_pred ccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc
Confidence 56799999999999998 8888888888 799998889999999999999999999999877653
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=5e-12 Score=124.47 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=108.8
Q ss_pred EEEEEeC-CCCCCCcccccccccc--C-------ccccCCHHHHHHHHHHHHH------CC---------------CcEE
Q 012929 193 VEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKEV 241 (453)
Q Consensus 193 ~~~i~is-rGC~~~CsFC~~~~~r--g-------~~rsr~~e~Iv~Ei~~l~~------~G---------------~~eI 241 (453)
...+.++ .||+++|.||..+... | ..+..++++|++++....+ .| ++.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 3467888 7999999999976422 1 2477899999988866532 12 4567
Q ss_pred EEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHH
Q 012929 242 WLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (453)
Q Consensus 242 ~l~-~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vL 320 (453)
.|. +.+...+ ..+.++++.+.+. +. .+.+. ++... .+ . +..+ +...+.+++++.+++++
T Consensus 132 ~~s~gGEPll~-----~~l~~li~~~~~~----g~-~~~l~-TNG~~-~~-~--l~~L-----~~~~v~isld~~~~~~~ 191 (311)
T 2z2u_A 132 AISLSGEPTLY-----PYLDELIKIFHKN----GF-TTFVV-SNGIL-TD-V--IEKI-----EPTQLYISLDAYDLDSY 191 (311)
T ss_dssp EECSSSCGGGS-----TTHHHHHHHHHHT----TC-EEEEE-ECSCC-HH-H--HHHC-----CCSEEEEECCCSSTTTC
T ss_pred EEeCCcCccch-----hhHHHHHHHHHHC----CC-cEEEE-CCCCC-HH-H--HHhC-----CCCEEEEEeecCCHHHH
Confidence 776 4333332 3688898888763 33 45554 44432 22 2 3332 23689999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 321 SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 321 k~m~R~--~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
+.+++. .+.+++.+.++.+++. | .+...+ +..||.+. ++.++++++.+++++.+++++|.|.++++.
T Consensus 192 ~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~-~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 192 RRICGGKKEYWESILNTLDILKEK--K-RTCIRT-TLIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--S-SEEEEE-EECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHhCCccchHHHHHHHHHHHHhc--C-CEEEEE-EEECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 999887 6789999999999887 6 444433 23477777 899999999999999999999999998873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.32 E-value=6.4e-11 Score=121.35 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=131.7
Q ss_pred cceEEEEEeCCCCCCCccccccccccC-ccccCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 012929 190 NKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (453)
Q Consensus 190 ~~~~~~i~isrGC~~~CsFC~~~~~rg-~~rsr~~e~Iv~Ei~~l~~-~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (453)
.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|.+...+.. ..+.++++.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~ 189 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLR 189 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHH
Confidence 345678899999999999998765444 3457889999999998887 599999999977655411 13778888886
Q ss_pred HhCCCCCCceEEEEe----cCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 012929 268 AELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~ 343 (453)
+ ++ +...+++++ ..|..+++++ +..+.+. ..+++++++.+++ .+ + +++.++++.++++
T Consensus 190 ~-~~--~v~~i~i~Tng~~~~p~~it~e~--l~~L~~~----~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~~a- 251 (416)
T 2a5h_A 190 E-IP--HVEIVRIGSRTPVVLPQRITPEL--VNMLKKY----HPVWLNTHFNHPN---EI----T-EESTRACQLLADA- 251 (416)
T ss_dssp T-ST--TCCEEEEECSHHHHCGGGCCHHH--HHHHGGG----CSEEEEECCCSGG---GC----C-HHHHHHHHHHHHT-
T ss_pred h-cC--CccEEEEEecccccccccCCHHH--HHHHHhc----CcEEEEEecCCHH---HH----h-HHHHHHHHHHHHc-
Confidence 5 43 455777763 1334455554 3434332 4678999987772 22 3 8999999999999
Q ss_pred CCcEEEEEEEE--eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 344 PGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 344 pgi~v~~~~Iv--G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
|+.+....++ |+ +++.+++.+.++++.++++....++.+.+.+||+.+
T Consensus 252 -Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~ 301 (416)
T 2a5h_A 252 -GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHF 301 (416)
T ss_dssp -TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGG
T ss_pred -CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccc
Confidence 8765544433 66 488899999999999999877667766667999876
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.17 E-value=3.7e-10 Score=114.53 Aligned_cols=195 Identities=16% Similarity=0.306 Sum_probs=133.5
Q ss_pred ceEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHH----------CCCcEEEEeecCCCCCCCCcC--CC
Q 012929 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIG--VN 258 (453)
Q Consensus 191 ~~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~----------~G~~eI~l~~~d~~~yg~d~~--~~ 258 (453)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|.|+| .|...- ..
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~G-----gGEPLln~d~ 187 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG-----MGEPLLNLNN 187 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECS-----SSCGGGCHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeC-----CCCcccCHHH
Confidence 345678888999999999998743 45688999999999987653 2478899984 133221 23
Q ss_pred HHHHHHHHHHhCCCCCC----ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhc---CCCCHHH
Q 012929 259 LPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSD 331 (453)
Q Consensus 259 l~~Ll~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~---R~~t~e~ 331 (453)
+.++++.+.+.. +. ..+.++ ++. .+ +.+ .+++.. +-..+.+.+.+.+++..+.+. ++++.++
T Consensus 188 v~~~i~~lk~~~---Gl~~s~r~itls-TnG-~~-p~i---~~L~~~--~d~~LaiSLka~d~e~~~~i~pv~~~~~le~ 256 (404)
T 3rfa_A 188 VVPAMEIMLDDF---GFGLSKRRVTLS-TSG-VV-PAL---DKLGDM--IDVALAISLHAPNDEIRDEIVPINKKYNIET 256 (404)
T ss_dssp HHHHHHHHHSTT---TTCCCGGGEEEE-ESC-CH-HHH---HHHHHH--CCCEEEEECCCSSHHHHHHHSGGGGTSCHHH
T ss_pred HHHHHHHHHhhc---CcCcCCCceEEE-CCC-cH-HHH---HHHHHh--hcceEEecccCCCHHHHHHhcCCccCCCHHH
Confidence 566666665421 22 256665 332 22 333 333333 223677899999999887654 6889999
Q ss_pred HHHHHHHH-HHhCC---CcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH---HHHHHHHHHHH
Q 012929 332 FRTVVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL---NLDSTELLSLL 404 (453)
Q Consensus 332 ~~~~i~~l-r~~~p---gi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~---~~R~~~l~~~~ 404 (453)
+.+.++.+ .+... .+.+.+-+|=|+ +++++++.+..+|++.++. .+++.+|.|+|+++.. .++..++.+..
T Consensus 257 vl~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~~~ps~e~i~~f~~iL 334 (404)
T 3rfa_A 257 FLAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPYGRSSNSRIDRFSKVL 334 (404)
T ss_dssp HHHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999554 44411 355666566565 7999999999999999874 7899999999998654 55555555443
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.87 E-value=9.2e-05 Score=73.77 Aligned_cols=164 Identities=13% Similarity=0.206 Sum_probs=103.5
Q ss_pred EEEeCCCCCCCccccccccccCc----cccCCHHHHHHHHHHHHH-CCCc-EEEEeecCCCCCCCCcCCC-HHHHHHHHH
Q 012929 195 ILPINVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVN-LPILLNAIV 267 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~----~rsr~~e~Iv~Ei~~l~~-~G~~-eI~l~~~d~~~yg~d~~~~-l~~Ll~~l~ 267 (453)
.+...+||++.|.||......|. ......++++++++...+ .+.+ ..+-+|.++..|..+.... ..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 46778999999999988755542 235678999999876443 3433 4556676666663222222 345666555
Q ss_pred HhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhCCCc
Q 012929 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~-t~e~~~~~i~~lr~~~pgi 346 (453)
+. +...+.+.+=.+ .++ . |..+...+. ..+.+.+- ++++-+.+-.+. +.++-.++++.++++ |+
T Consensus 190 ~~----~~~~v~i~TKs~-lid-~---L~~l~~~~~--v~V~~Sit--t~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 AT----DYGRLRFVTKYE-HVD-H---LLDARHNGK--TRFRFSIN--SRYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp HC----SSEEEEEEESCC-CCG-G---GTTCCCTTC--EEEEEEEC--CHHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred hC----CCceEEEEeCCc-CHH-H---HHhcCcCCc--eEEEEEEc--CHHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 42 223455542222 232 2 222222222 24445553 377778887654 789999999999999 99
Q ss_pred EEEEEEEEeCCCCCH-HHHHHHHHHHHh
Q 012929 347 QIATDIICGFPGETD-EDFNQTVNLIKE 373 (453)
Q Consensus 347 ~v~~~~IvG~PgET~-ed~~~tl~~i~~ 373 (453)
.+...+.==+|+++. +++.+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 988877777898775 678888876654
No 13
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.31 E-value=0.002 Score=56.65 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=76.1
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|-+-|.|=..-..-...++..|+..||+++.. ..++|+|++ ||+.+.. ...+.++++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~~~-~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNGAH-LHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeechhh-HHHHHHHHHHHHh
Confidence 45888888887777777899999999999999864 368999999 5665543 4567777887777
Q ss_pred CC---CCEEEEccccCCchh-hhcCCccEEEcCCC-hhHHHHHHHHH
Q 012929 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEET 165 (453)
Q Consensus 124 ~~---~~vVvgGc~a~~~~e-~~~~~~d~vvG~~~-~~~l~~~l~~~ 165 (453)
.+ .+|++||..++...+ +.+...|.+++++. .....+.+.+.
T Consensus 96 ~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 96 LGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp TTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 64 679999977654443 44566777787655 23455555544
No 14
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.10 E-value=0.0082 Score=53.32 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=85.6
Q ss_pred EEEEeecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHH
Q 012929 240 EVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318 (453)
Q Consensus 240 eI~l~~~d~~~yg~d~~~~l-~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~ 318 (453)
.|.|+|...+.+ .++ .++++.+.+. + ..+.+. ++.. +.++. +..++.. +..+.+.+.+.+++
T Consensus 6 ~v~~tGGEPll~-----~~~~~~l~~~~~~~----g-~~~~l~-TNG~-l~~~~--~~~l~~~---~d~v~isld~~~~~ 68 (182)
T 3can_A 6 GVTFCGGEPLLH-----PEFLIDILKRCGQQ----G-IHRAVD-TTLL-ARKET--VDEVMRN---CELLLIDLKSMDST 68 (182)
T ss_dssp CEEECSSTGGGS-----HHHHHHHHHHHHHT----T-CCEEEE-CTTC-CCHHH--HHHHHHT---CSEEEEECCCSCHH
T ss_pred EEEEEcccccCC-----HHHHHHHHHHHHHC----C-CcEEEE-CCCC-CCHHH--HHHHHhh---CCEEEEECCCCCHH
Confidence 466666444332 244 4777776542 3 244454 4544 34332 4444443 36789999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCCcEE--EEEEEEeCCCCCHHHHHHHHHHHHhc-CC-CeEEEEecccCCCCH
Q 012929 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQI--ATDIICGFPGETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGIQ 391 (453)
Q Consensus 319 vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v--~~~~IvG~PgET~ed~~~tl~~i~~l-~~-~~i~i~~~sp~pGT~ 391 (453)
..+.++. .+.+.+.+.++.+++. |+.+ .+.++-|+ .++.+++.+.++++.++ ++ ..+++.+|.|..+..
T Consensus 69 ~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v~~~~-n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 69 VHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPLIEGV-NADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEECBTT-TCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEEECCC-CCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 8877754 3458999999999998 6554 44444343 47899999999999999 88 899999999977654
No 15
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=96.19 E-value=0.024 Score=48.27 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=65.2
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~ 124 (453)
.+|-+-|.|=-.-..-...++..|+..||++++. ..+||+|++ ||+.+.. ...+.+.++.+++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQG-EIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTH-HHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCcCc-HHHHHHHHHHHHhc
Confidence 3677777776666666788899999999999753 468999999 5666543 34566777777765
Q ss_pred C---CCEEEEcccc---CCch---h-hhcCCccEEEcCCC
Q 012929 125 K---KPLVVAGCVP---QGSR---D-LKELEGVSIVGVQQ 154 (453)
Q Consensus 125 ~---~~vVvgGc~a---~~~~---e-~~~~~~d~vvG~~~ 154 (453)
+ .+|++||-.. +..+ + +.++..|.+++.+.
T Consensus 82 g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 82 GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 4 5699999652 2222 1 34556788887765
No 16
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=95.48 E-value=0.058 Score=58.06 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=70.9
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..||.+-|.|-..-..-...++..|+..||++++. ..+||+|+|++ ..+.+ ...+.++++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~~~-~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS-LAGGH-LTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEE-CSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEee-ecHhH-HHHHHHHHHHHHh
Confidence 35899999999887788889999999999999875 36899999943 33333 3457777888887
Q ss_pred CCC---CEEEEccccCCchh-hhcCCccEEEcCCC
Q 012929 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvG~~~ 154 (453)
.|. +|++||-.+....+ +.+...|.+++.+.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 764 78999965554433 45666778888655
No 17
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=95.20 E-value=0.086 Score=57.00 Aligned_cols=95 Identities=13% Similarity=0.248 Sum_probs=70.1
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..||.+-|.|-..-..-...++..|+..||++++. ..+||+|+|++ ..+.. ...+.++++.+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~~~-~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVST-LAAGH-KTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEE-CSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEee-ecHHH-HHHHHHHHHHHHh
Confidence 35899999999887788889999999999999875 36899999943 33333 3457777888887
Q ss_pred CCC---CEEEEccccCCchh-hhcCCccEEEcCCC
Q 012929 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 124 ~~~---~vVvgGc~a~~~~e-~~~~~~d~vvG~~~ 154 (453)
.|. +|++||-.+....+ +.+...|.+++.+.
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgt 716 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGT 716 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTC
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCC
Confidence 764 78999955544333 45667788887553
No 18
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=94.36 E-value=0.17 Score=46.07 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=63.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|-+-|.+=..-..-...++..|+..||++.+. ..++|+|++ |++.+.. ...+.+.++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGM-SALLTTT-MMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEE-ECCSGGG-THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHh
Confidence 35777777766666677889999999999999753 357899999 6666544 3467888888877
Q ss_pred CC----CCEEEEccccCCchhh-hcCCccEE
Q 012929 124 AK----KPLVVAGCVPQGSRDL-KELEGVSI 149 (453)
Q Consensus 124 ~~----~~vVvgGc~a~~~~e~-~~~~~d~v 149 (453)
.+ .+|++||..++ ++. .++..|.+
T Consensus 166 ~~~~~~~~v~vGG~~~~--~~~~~~~gad~~ 194 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLS--QDFADEIGADGY 194 (210)
T ss_dssp TTCGGGCEEEEESTTCC--HHHHHHHTCSEE
T ss_pred cCCCCCCeEEEECCCCC--HHHHHHcCCeEE
Confidence 65 68999998875 443 34444543
No 19
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=94.18 E-value=0.44 Score=44.83 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=70.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|-+-|.+=..-.--...++..|+..||++++. ..++|+|++ ||+.+.. ...+.+.++.+++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l-S~l~~~~-~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG-TALMTTT-MYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE-ECCCTTT-TTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeeccCC-HHHHHHHHHHHHh
Confidence 46777777766666667888999999999998643 357899999 6665544 3467888888877
Q ss_pred CC--CCEEEEccccCCchhh-hcCCccEEEcCCChhHHHHHHHHHh
Q 012929 124 AK--KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 124 ~~--~~vVvgGc~a~~~~e~-~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
.+ .+|++||..++ ++. ..+..| +.+... ....+++....
T Consensus 201 ~~~~~~v~vGG~~~~--~~~~~~igad-~~~~da-~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NGIKIPFACGGGAVN--QDFVSQFALG-VYGEEA-ADAPKIADAII 242 (258)
T ss_dssp TTCCCCEEEESTTCC--HHHHHTSTTE-EECSST-THHHHHHHHHH
T ss_pred cCCCCcEEEECccCC--HHHHHHcCCe-EEECCH-HHHHHHHHHHH
Confidence 65 68999998876 443 244434 444433 34556666554
No 20
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=93.62 E-value=1.3 Score=42.40 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=99.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
...+.++.++-++.+.+.|+..|.+.+.....|-... ....++++.+.+. + .+++...-+. . +.+...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~~-~-----~~~v~~l~~n--~---~~i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRRA-D-----GVRYSVLVPN--M---KGYEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCCC-S-----SSEEEEECSS--H---HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHhC-C-----CCEEEEEeCC--H---HHHHHH
Confidence 4578999999999998899999998764322221100 1345666665331 1 2233222232 1 224444
Q ss_pred HhCCCCceeeecccCCCCHHHHH-hhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEE--EeCCCC---CHHHHHHHHHH
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVLS-AMNREY--TLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 370 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vLk-~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~I--vG~PgE---T~ed~~~tl~~ 370 (453)
.+ .++..+++-+ ++|+.-.+ .+++.. ..+.+.++++.+++. |+.+.+.+. +|.|.+ +.+.+.+.++.
T Consensus 89 ~~--~G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AA--AHADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HH--TTCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HH--CCCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 44 3456777754 55766553 344432 456667778999999 999998877 454543 56777777777
Q ss_pred HHhcCCCeEEEEecccCCCCHhH-HHHHHHH
Q 012929 371 IKEYKFPQVHISQFYPRPGIQFL-NLDSTEL 400 (453)
Q Consensus 371 i~~l~~~~i~i~~~sp~pGT~~~-~~R~~~l 400 (453)
+.+++.+.+.+.--.=. .||.. .++.+.|
T Consensus 164 ~~~~G~d~i~l~Dt~G~-~~P~~~~~lv~~l 193 (295)
T 1ydn_A 164 LFSLGCHEVSLGDTIGR-GTPDTVAAMLDAV 193 (295)
T ss_dssp HHHHTCSEEEEEETTSC-CCHHHHHHHHHHH
T ss_pred HHhcCCCEEEecCCCCC-cCHHHHHHHHHHH
Confidence 77999999888752222 56654 3443333
No 21
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=92.62 E-value=0.52 Score=44.48 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=64.6
Q ss_pred CceEEEEeeCCCcChhHHHHHHHH--------HHHc-CCeeeCC--------------CCCCcEEEEeecccccc--hHH
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQ--------LSAF-GYALTDN--------------SEEADIWLINTCTVKSP--SQS 112 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~--------L~~~-g~~~~~~--------------~~~AD~viinTCtv~~~--a~~ 112 (453)
..+|-+-|.|=-.-..--..++.. |+.+ ||++++- ..+||+|++ ||+.+.. ...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~Vgl-S~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeecCCccchHH
Confidence 356666565544444555666666 8999 9999764 468999999 7777751 344
Q ss_pred HHHHHHHHHhhCC----CCEEEEccccCCchh-hhcCCccEEEcCCC
Q 012929 113 AMDTLIAKCKSAK----KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 113 ~~~~~i~~~~~~~----~~vVvgGc~a~~~~e-~~~~~~d~vvG~~~ 154 (453)
.+.+.++.+++.| .+|++||... .++ ..++..|.+.+.+.
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHcCCeEEECCch
Confidence 5777788887766 5789999854 444 34666778887665
No 22
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=92.30 E-value=1.5 Score=41.98 Aligned_cols=162 Identities=10% Similarity=0.127 Sum_probs=100.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
...+.++.++-++.|.+.|++.|.+.+. ......+ .+..++++.+.+ .+ + ..+.. +-+. . ..+.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~~--~-~~~~~--l~~~--~---~~i~ 87 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSF---VSPKWVPQMGDHTEVLKGIQK-FP--G-INYPV--LTPN--L---KGFE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEEC---CCTTTCGGGTTHHHHHHHSCC-CT--T-CBCCE--ECCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCC---cCcccccccCCHHHHHHHHhh-CC--C-CEEEE--EcCC--H---HhHH
Confidence 4578999999999999999999988652 1221111 233444444322 21 2 12221 2222 1 2244
Q ss_pred HHHhCCCCceeeecccCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEE--eCCCC---CHHHHHHHH
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTV 368 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~-vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~Iv--G~PgE---T~ed~~~tl 368 (453)
...+ .+...+++-+ +.|+. ..+.+++.. ..+.+.+.++.+++. |+.+..++++ |.|.+ +.+.+.+.+
T Consensus 88 ~a~~--ag~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 88 AAVA--AGAKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHH--TTCSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHH--CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 4444 3457888855 55654 446777743 567888899999999 9999999884 54532 678888888
Q ss_pred HHHHhcCCCeEEEEecccCCCCHhH-HHHHHHH
Q 012929 369 NLIKEYKFPQVHISQFYPRPGIQFL-NLDSTEL 400 (453)
Q Consensus 369 ~~i~~l~~~~i~i~~~sp~pGT~~~-~~R~~~l 400 (453)
+.+.+++.+.+.+.--. =-.||.. .+..+.|
T Consensus 163 ~~~~~~Ga~~i~l~DT~-G~~~P~~~~~lv~~l 194 (298)
T 2cw6_A 163 KKFYSMGCYEISLGDTI-GVGTPGIMKDMLSAV 194 (298)
T ss_dssp HHHHHTTCSEEEEEETT-SCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCC-CCcCHHHHHHHHHHH
Confidence 99999999988877433 2245654 3333333
No 23
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=91.63 E-value=0.4 Score=50.41 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=61.5
Q ss_pred ceEEEEeeCCCcChhHHHHH----HHHHHHcCCeeeCC--------------CCCCcEEEEeecccccc--hHHHHHHHH
Q 012929 59 ETIYMKTFGCSHNQSDSEYM----AGQLSAFGYALTDN--------------SEEADIWLINTCTVKSP--SQSAMDTLI 118 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~----~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~--a~~~~~~~i 118 (453)
.||-+-|.|=..-..--..+ +..|+..||++++. ..+||+|+| ||..+.. ....+.+.+
T Consensus 603 GKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL-SsLLTt~dihL~~MkevI 681 (763)
T 3kp1_A 603 LKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA-STIISHDDIHYKNMKRIH 681 (763)
T ss_dssp CEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCGGGHHHHHHHHHH
T ss_pred CEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccCchhhHHHHHHHH
Confidence 46666665543333333222 46789999999765 468999999 6676652 344567778
Q ss_pred HHHhhCCC----CEEEEccccCCchhh-hcCCccEEEcCCC
Q 012929 119 AKCKSAKK----PLVVAGCVPQGSRDL-KELEGVSIVGVQQ 154 (453)
Q Consensus 119 ~~~~~~~~----~vVvgGc~a~~~~e~-~~~~~d~vvG~~~ 154 (453)
+.+++.|. +|++||-.++ ++. .++..|.+.+.+.
T Consensus 682 elLrE~GlrDkIkVIVGGa~~t--qd~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 682 ELAVEKGIRDKIMIGCGGTQVT--PEVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHHTTCTTTSEEEEECTTCC--HHHHHTTTCSEEECTTC
T ss_pred HHHHhcCCCCCCEEEEECCCCC--HHHHHHcCCcEEECCcc
Confidence 88877763 5889997764 443 4566788887655
No 24
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=91.45 E-value=9.2 Score=36.49 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=98.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
...+.++.++-++.|.+.|+..|...+. ......+ .+..++++.+.+ . ....+.. .-+. . +.+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~~~~~d~~~~~~~~~~-~---~~~~~~~--l~~~-~----~~i~ 90 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSF---VSPKWVPQMAGSAEVFAGIRQ-R---PGVTYAA--LAPN-L----KGFE 90 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C---TTSEEEE--ECCS-H----HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCC---cCccccccccCHHHHHHHhhh-c---CCCEEEE--EeCC-H----HHHH
Confidence 5678999999999999999999988651 1111110 233445444432 1 2223322 2231 1 2244
Q ss_pred HHHhCCCCceeeecccCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeC--CC---CCHHHHHHHH
Q 012929 297 EVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQTV 368 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~-~vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~--Pg---ET~ed~~~tl 368 (453)
...+ .++..+++-. +.|+ ...+.+++.. ..+.+.+.++.+++. |+.+.+++..-| |. -+.+.+.+.+
T Consensus 91 ~a~~--aG~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 91 AALE--SGVKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHH--TTCCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHh--CCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 4444 3457777755 4444 3456777754 567788889999999 999988887643 43 2456667777
Q ss_pred HHHHhcCCCeEEEEecccCCCCHhH-HHHHHHH
Q 012929 369 NLIKEYKFPQVHISQFYPRPGIQFL-NLDSTEL 400 (453)
Q Consensus 369 ~~i~~l~~~~i~i~~~sp~pGT~~~-~~R~~~l 400 (453)
+.+.+.+.+.+.+.--.=. +||.. .++.+.|
T Consensus 166 ~~~~~~G~d~i~l~DT~G~-~~P~~~~~lv~~l 197 (302)
T 2ftp_A 166 RELQQMGCYEVSLGDTIGV-GTAGATRRLIEAV 197 (302)
T ss_dssp HHHHHTTCSEEEEEESSSC-CCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCC-cCHHHHHHHHHHH
Confidence 7777999998887743322 56654 3333333
No 25
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=90.47 E-value=0.89 Score=41.50 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=55.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEE--eecccccchHHHHHHHHHHH
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NTCTVKSPSQSAMDTLIAKC 121 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~vii--nTCtv~~~a~~~~~~~i~~~ 121 (453)
..||-+-|.+=-.-.---..++..|+..||++++- ..++|+|++ ++-. .+....+.+.++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHH
Confidence 35777766665555566778889999999999764 467899999 5322 23445677788888
Q ss_pred hhCC----CCEEEEccccC
Q 012929 122 KSAK----KPLVVAGCVPQ 136 (453)
Q Consensus 122 ~~~~----~~vVvgGc~a~ 136 (453)
++.+ .+|++||-..+
T Consensus 170 ~~~~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS 188 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC
T ss_pred HHcCCCCCCEEEEECCCCC
Confidence 7765 46999997665
No 26
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=90.01 E-value=0.36 Score=51.25 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=67.8
Q ss_pred CceEEEEeeCCC-cChhHHHHHHHHHHHcCCeeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~-~N~~dse~~~~~L~~~g~~~~~~-------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..++.+-++|-. .-..-...++..|+..||++++. ..+||+|+| |+.-......+.++++.+++
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~ 586 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 586 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHh
Confidence 358999999985 44444678889999999999875 258999999 34433333457778888888
Q ss_pred CCC-CEEEEccccCCc----hhhhcCCccEEEcCCChhHHHHHHHH
Q 012929 124 AKK-PLVVAGCVPQGS----RDLKELEGVSIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 124 ~~~-~vVvgGc~a~~~----~e~~~~~~d~vvG~~~~~~l~~~l~~ 164 (453)
.|. +|+|||- +... +++.+ ..|.++..+. ...+++.+
T Consensus 587 aG~~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~--~~~~~l~~ 628 (637)
T 1req_B 587 AGAKALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM--DVVDTLSS 628 (637)
T ss_dssp TTCSEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC--CHHHHHHH
T ss_pred CCCCeEEEeCC-CCccchhhHHHHh-ccceEecCCc--CHHHHHHH
Confidence 885 6888984 3222 23444 4566776654 24444443
No 27
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=88.04 E-value=7.5 Score=37.32 Aligned_cols=156 Identities=11% Similarity=0.032 Sum_probs=95.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (453)
....+.++.++-++.|.+.|++.|...+. ......+ .+..++++.+.+ . ...++..+.+. . + .+
T Consensus 22 ~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~-----~~~~~~~l~~~-~-~---~i 87 (307)
T 1ydo_A 22 PVWIATEDKITWINQLSRTGLSYIEITSF---VHPKWIPALRDAIDVAKGIDR-E-----KGVTYAALVPN-Q-R---GL 87 (307)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C-----TTCEEEEECCS-H-H---HH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccCCHHHHHHHhhh-c-----CCCeEEEEeCC-H-H---hH
Confidence 35679999999999999999999988652 1111111 233444443321 1 22233333342 2 2 23
Q ss_pred HHHHhCCCCceeeecccCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeC--CC---CCHHHHHHH
Q 012929 296 AEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQT 367 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs~~-vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~--Pg---ET~ed~~~t 367 (453)
....+. +...+++.+ |.|+. ..+.+++.. ..+.+.+.++.+++. |..+..+++.-| |. -+.+.+.+.
T Consensus 88 ~~a~~~--g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 162 (307)
T 1ydo_A 88 ENALEG--GINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRL 162 (307)
T ss_dssp HHHHHH--TCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred HHHHhC--CcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHH
Confidence 333332 446777766 56665 335566532 356678889999999 999988887755 42 256778888
Q ss_pred HHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 368 VNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 368 l~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
++.+.+++.+.+.+.--.= -.||..
T Consensus 163 ~~~~~~~Ga~~i~l~DT~G-~~~P~~ 187 (307)
T 1ydo_A 163 SEALFEFGISELSLGDTIG-AANPAQ 187 (307)
T ss_dssp HHHHHHHTCSCEEEECSSC-CCCHHH
T ss_pred HHHHHhcCCCEEEEcCCCC-CcCHHH
Confidence 8888899998887753222 245654
No 28
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=87.76 E-value=1.5 Score=46.15 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=59.0
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|-+-|.+=..-..-...++..|+..||++++. ..++|+|++ ||+.+.. ...+.+.++++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgL-S~l~t~~-~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITPS-LDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTHH-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EecCCCC-HHHHHHHHHHHHH
Confidence 45777777666666667788899999999999754 357999999 6666543 3467788888877
Q ss_pred CC--CCEEEEccccCC
Q 012929 124 AK--KPLVVAGCVPQG 137 (453)
Q Consensus 124 ~~--~~vVvgGc~a~~ 137 (453)
.| .+|+|||..++.
T Consensus 176 ~g~~i~ViVGGa~~~~ 191 (579)
T 3bul_A 176 QGFTIPLLIGGATTSK 191 (579)
T ss_dssp TTCCSCEEEESTTCCH
T ss_pred cCCCCeEEEEccccch
Confidence 76 689999986654
No 29
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=87.11 E-value=7 Score=31.62 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=68.9
Q ss_pred EEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCC-ch
Q 012929 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SR 139 (453)
Q Consensus 62 ~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~-~~ 139 (453)
-|+|++-.- +-+.+.++|.+.||+..+. ...+|+++| -|+..+.....+...|+.+++.|++|+.-=++... .|
T Consensus 7 lFISh~~~d---~~~~L~~~l~~~~f~~~~~~I~~~~~vIv-L~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P 82 (111)
T 1eiw_A 7 LYITEGEVE---DYRVFLERLEQSGLEWRPATPEDADAVIV-LAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVP 82 (111)
T ss_dssp EEECCCCSH---HHHHHHHHHHHHCSCEEECCSSSCSEEEE-EGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCC
T ss_pred EEEecccHh---HHHHHHHHHhCCCCeeecCccccCCEEEE-EeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCC
Confidence 356666653 7788899998779988763 567999888 56665544556777888899999998865555542 23
Q ss_pred hhhcCCccEEEcCCChhHHHHHHHHHh
Q 012929 140 DLKELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 140 e~~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
..-.-.++.++|... +.+.+.+....
T Consensus 83 ~~l~~~a~~iV~Wn~-~~I~~aI~~~~ 108 (111)
T 1eiw_A 83 PELEAVSSEVVGWNP-HCIRDALEDAL 108 (111)
T ss_dssp TTHHHHCSEEECSCH-HHHHHHHHHHH
T ss_pred HHHHhhCceeccCCH-HHHHHHHHhcc
Confidence 211112577999976 67888876643
No 30
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=82.68 E-value=9.6 Score=36.29 Aligned_cols=157 Identities=8% Similarity=-0.058 Sum_probs=90.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-...+.++-++-++.|.+.|++.|..... .... .-.+.++++.+..+ + .. +..+.+.. .+.++...+
T Consensus 21 ~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~--i~~l~~~~-~~di~~a~~ 87 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSP----GDFECVKAIAKAIK--H-CS--VTGLARCV-EGDIDRAEE 87 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCH----HHHHHHHHHHHHCC--S-SE--EEEEEESS-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCc----cHHHHHHHHHHhcC--C-CE--EEEEecCC-HHHHHHHHH
Confidence 35779999999999999999999987641 1111 11345666666543 3 22 22222211 122222222
Q ss_pred HHhCCCCceeeecccCCCCHHH-HHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~v-Lk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.+. ..+...+++-+ |.|+.- .+.+++.. ..+.+.+.++.+++. |..+..+...+. --+.+.+.+.++.+.++
T Consensus 88 ~~~-~ag~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~ 162 (293)
T 3ewb_X 88 ALK-DAVSPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDA 162 (293)
T ss_dssp HHT-TCSSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHT
T ss_pred HHh-hcCCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHc
Confidence 222 24457788765 556543 34555532 345667777888888 877765554332 24567778888889999
Q ss_pred CCCeEEEEecccCCCCHhH
Q 012929 375 KFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 375 ~~~~i~i~~~sp~pGT~~~ 393 (453)
+.+.+.+---.= -+||..
T Consensus 163 G~~~i~l~DT~G-~~~P~~ 180 (293)
T 3ewb_X 163 GATVINIPDTVG-YTNPTE 180 (293)
T ss_dssp TCCEEEEECSSS-CCCHHH
T ss_pred CCCEEEecCCCC-CCCHHH
Confidence 998776543221 245654
No 31
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=77.37 E-value=29 Score=33.55 Aligned_cols=144 Identities=10% Similarity=0.078 Sum_probs=87.5
Q ss_pred ccCCHHHHHHHHH-HHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh---CCCCCCceEEEEecCCcChhHHHHH
Q 012929 219 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 294 (453)
Q Consensus 219 rsr~~e~Iv~Ei~-~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~---i~~~~~~~ir~~~~~p~~i~~~l~~ 294 (453)
...+.++.++-++ .|.+.|+..|.+.+.-. +. .-.+.++++.+. +. .....++..+.+.. . .
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~----~~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~-~-~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASARV---SK----GELETVQKIMEWAATEQ--LTERIEILGFVDGN-K-T--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CT----THHHHHHHHHHHHHHTT--CGGGEEEEEESSTT-H-H---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----hHHHHHHHHHhhhhhhc--cCCCCeEEEEccch-h-h---
Confidence 4579999999999 99888999998765211 11 113455555441 11 12234444343321 1 2
Q ss_pred HHHHHhCCCCceeeecccCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC---CCHHHHHHHH
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTV 368 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~-~vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg---ET~ed~~~tl 368 (453)
+....+. +...+++-+- .|+ ...+.+|+.. ..+.+.+.++.+++. |+.+..++.. +|. -+.+.+.+.+
T Consensus 102 i~~a~~~--g~~~v~i~~~-~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~ 175 (337)
T 3ble_A 102 VDWIKDS--GAKVLNLLTK-GSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHH--TCCEEEEEEE-CSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHH
T ss_pred HHHHHHC--CCCEEEEEEe-cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHH
Confidence 3333332 3456777554 454 4456666632 457778888888999 9988877765 221 2466677778
Q ss_pred HHHHhcCCCeEEEE
Q 012929 369 NLIKEYKFPQVHIS 382 (453)
Q Consensus 369 ~~i~~l~~~~i~i~ 382 (453)
+.+.+++.+.+.+.
T Consensus 176 ~~~~~~Ga~~i~l~ 189 (337)
T 3ble_A 176 EHLSKEHIERIFLP 189 (337)
T ss_dssp HHHHTSCCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 88888898877664
No 32
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=76.59 E-value=35 Score=33.05 Aligned_cols=140 Identities=13% Similarity=0.161 Sum_probs=89.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEe-----ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEec-CCcChhHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-NPPFILEHL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~-----~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~-~p~~i~~~l 292 (453)
...+.++.++-++.|.+.|+..|.+. ..-.+.+|.. ...-.+.++++.+.++ + ..+..+ .|..-...
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~-~~~~~e~l~~i~~~~~--~---~~i~~l~~p~~~~~~- 97 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFG-RHTDLEYIEAVAGEIS--H---AQIATLLLPGIGSVH- 97 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCC-SSCHHHHHHHHHTTCS--S---SEEEEEECBTTBCHH-
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCC-CCCHHHHHHHHHhhCC--C---CEEEEEecCCcccHH-
Confidence 46788999999999999999999983 1111112322 1345678888876543 2 233322 44321222
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~ 372 (453)
.+....+. +...+++.+ +.++ .+...+.++.+++. |+.+...+... |.-+++.+.+..+.+.
T Consensus 98 -~i~~a~~a--Gvd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 98 -DLKNAYQA--GARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLME 159 (345)
T ss_dssp -HHHHHHHH--TCCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHHH
T ss_pred -HHHHHHhC--CcCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHHH
Confidence 23333332 345566654 3332 25678889999999 99888887655 5667888999999999
Q ss_pred hcCCCeEEEEe
Q 012929 373 EYKFPQVHISQ 383 (453)
Q Consensus 373 ~l~~~~i~i~~ 383 (453)
+.+.+.+.+.-
T Consensus 160 ~~Ga~~i~l~D 170 (345)
T 1nvm_A 160 SYGATCIYMAD 170 (345)
T ss_dssp HHTCSEEEEEC
T ss_pred HCCCCEEEECC
Confidence 99988776643
No 33
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=73.72 E-value=17 Score=35.77 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=81.1
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
..+.+.++-++-++.|.+.|++.|..... .... .=.+.++++.+.++ + .. +..+.+.. .+.++...+
T Consensus 28 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~--i~~l~r~~-~~di~~a~~ 94 (370)
T 3rmj_A 28 GAAMTKEEKIRVARQLEKLGVDIIEAGFA---AASP----GDFEAVNAIAKTIT--K-ST--VCSLSRAI-ERDIRQAGE 94 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEEEG---GGCH----HHHHHHHHHHTTCS--S-SE--EEEEEESS-HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeCC---CCCH----HHHHHHHHHHHhCC--C-Ce--EEEEecCC-HHHHHHHHH
Confidence 35789999999999999999999987542 1111 11456666665443 2 22 22221111 122221222
Q ss_pred HHhCCCCceeeecccCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~-vLk~m~R~~--t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.+. ..+...+++-+ |.|+- +.+.+++.. ..+.+.+.++.+++. |..+..+...+. --+.+.+.+.++.+.+.
T Consensus 95 al~-~ag~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~ 169 (370)
T 3rmj_A 95 AVA-PAPKKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEA 169 (370)
T ss_dssp HHT-TSSSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHH
T ss_pred HHh-hCCCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHc
Confidence 222 24557777755 44554 445665532 345555566777777 765543333222 23456666777777888
Q ss_pred CCCeEEEE
Q 012929 375 KFPQVHIS 382 (453)
Q Consensus 375 ~~~~i~i~ 382 (453)
+.+.+.+-
T Consensus 170 Ga~~i~l~ 177 (370)
T 3rmj_A 170 GATTINIP 177 (370)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEec
Confidence 88776653
No 34
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=73.62 E-value=21 Score=35.88 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=86.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
-.+.+.++-++-++.|.+.|++.|.... .... ....+.++.+.+... . ..+ +....+. . +++..
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~~~--~-~~v-~~~~r~~-~----~di~~ 118 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKLGL--K-CKI-LTHIRCH-M----DDARV 118 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC--S-SEE-EEEEESC-H----HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhcCC--C-CEE-EEeeccC-h----hhHHH
Confidence 4578999999999999999999998753 1221 223456666665311 1 111 1222232 1 22333
Q ss_pred HHhCCCCceeeecccCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vL-k~m~R--~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.... +.+.+++-+ |.|+.-. ..+++ ....+.+.+.++.+++. |+.+..+..-++ .-+.+.+.+.++.+.+.
T Consensus 119 A~~a--G~~~V~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~ 192 (423)
T 3ivs_A 119 AVET--GVDGVDVVI-GTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKI 192 (423)
T ss_dssp HHHT--TCSEEEEEE-EC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCEEEEEe-eccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHh
Confidence 3332 446677765 3344322 23333 23467788899999999 999988887776 45678888888889999
Q ss_pred CCCeEEEE
Q 012929 375 KFPQVHIS 382 (453)
Q Consensus 375 ~~~~i~i~ 382 (453)
+.+.+.+-
T Consensus 193 Ga~~i~l~ 200 (423)
T 3ivs_A 193 GVNRVGIA 200 (423)
T ss_dssp CCSEEEEE
T ss_pred CCCccccC
Confidence 98876654
No 35
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=69.44 E-value=14 Score=35.68 Aligned_cols=145 Identities=13% Similarity=-0.012 Sum_probs=80.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
.+.+.++-++-++.|.+.|++.|.... ..... .+ .+.++++.+.++ + . ++..+.+.. .+.++...+.
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~---~d-~e~v~~i~~~~~--~-~--~i~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSP---GD-FNSVVEITKAVT--R-P--TICALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCH---HH-HHHHHHHHHHCC--S-S--EEEEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH---hH-HHHHHHHHHhCC--C-C--EEEEeecCC-HHHHHHHHHh
Confidence 567889999999999999999998753 11111 11 345567766543 2 2 333232221 1222212222
Q ss_pred HhCCCCceeeecccCCCCHHH-HHhhcC--CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 012929 299 LRHPCVYSFLHVPVQSGSDAV-LSAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~v-Lk~m~R--~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~ 375 (453)
+. ..+...+++-+ |.|+-- .+.+|+ ....+.+.+.++.+++. |+.+..+...+.. -+.+.+.+.++.+.+++
T Consensus 90 l~-~ag~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~~-~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 90 LR-FAKRSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAGR-ADQAFLARMVEAVIEAG 164 (325)
T ss_dssp HT-TCSSEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGGG-SCHHHHHHHHHHHHHHT
T ss_pred hc-ccCCCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcccccc-chHHHHHHHHHHHHhcC
Confidence 22 23556777644 445543 345555 34678889999999998 8876543333321 34556667777777778
Q ss_pred CCeEEE
Q 012929 376 FPQVHI 381 (453)
Q Consensus 376 ~~~i~i 381 (453)
.+.+.+
T Consensus 165 ~~~i~l 170 (325)
T 3eeg_A 165 ADVVNI 170 (325)
T ss_dssp CSEEEC
T ss_pred CCEEEe
Confidence 876554
No 36
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=68.02 E-value=3.1 Score=39.33 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=37.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhhhcCCccEEEc
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvG 151 (453)
.+||+++|+..|+.+.+-.++ ++.. +....||+.|+.+...|++.+...+.+-|
T Consensus 185 p~~D~viiTgstlvN~Tl~~l---L~~~-~~a~~vvl~GPStp~~P~lf~~Gv~~laG 238 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPRL---LELS-RNARRITLVGPGTPLAPVLFEHGLQELSG 238 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHHH---HHHT-TTSSEEEEESTTCCCCGGGGGTTCSEEEE
T ss_pred ccCCEEEEEeehhhcCCHHHH---HhhC-CCCCEEEEECCCchhhHHHHhcCcCEEEE
Confidence 568999998888888764443 4433 33456889999999999865554444444
No 37
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=65.20 E-value=5.3 Score=37.71 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhhhcCCccEEEcC
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV 152 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvG~ 152 (453)
.+||+++|+..|+.+.+-.+ +++..+ ..+.+|+.|+.+...|++.....+.+-|.
T Consensus 185 ~~aD~viiTGsTlvN~Ti~~---lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~ 239 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTLPR---LLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGF 239 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEE
T ss_pred hcCCEEEEEeeeeecCCHHH---HHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEe
Confidence 57999999888888876444 445443 45589999999999998655555544443
No 38
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=64.09 E-value=42 Score=31.40 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=83.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.+..+.+.+++.++.+++.|..-|.+-++. -..+...++..+++.+.+.. ...+.+.+.+|..+.. -.+
T Consensus 28 ~~~~~~~~a~~~a~~~v~~GAdiIDIg~~s---~~~eE~~rv~~vi~~l~~~~----~~pisIDT~~~~v~~a----al~ 96 (271)
T 2yci_X 28 ILNKDPRPIQEWARRQAEKGAHYLDVNTGP---TADDPVRVMEWLVKTIQEVV----DLPCCLDSTNPDAIEA----GLK 96 (271)
T ss_dssp HHTTCCHHHHHHHHHHHHTTCSEEEEECCS---CSSCHHHHHHHHHHHHHHHC----CCCEEEECSCHHHHHH----HHH
T ss_pred hhhCCHHHHHHHHHHHHHCCCCEEEEcCCc---CchhHHHHHHHHHHHHHHhC----CCeEEEeCCCHHHHHH----HHH
Confidence 345678999999999999999887775533 11221235666777776542 2456777655432211 111
Q ss_pred HHhCCCCceeeecccCCCC--HHHHHhh----------c---C--CCC----HHHHHHHHHHHHHhCCCcE---EEEEEE
Q 012929 298 VLRHPCVYSFLHVPVQSGS--DAVLSAM----------N---R--EYT----LSDFRTVVDTLIELVPGMQ---IATDII 353 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs--~~vLk~m----------~---R--~~t----~e~~~~~i~~lr~~~pgi~---v~~~~I 353 (453)
......+.+.++. +. + ++++... . + +.+ .+.+.+.++.+.++ |+. +..|=.
T Consensus 97 a~~Ga~iINdvs~--~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg 171 (271)
T 2yci_X 97 VHRGHAMINSTSA--DQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPL 171 (271)
T ss_dssp HCCSCCEEEEECS--CH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECC
T ss_pred hCCCCCEEEECCC--Cc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecC
Confidence 1111223233332 22 3 4455322 1 2 123 55677788888888 876 899999
Q ss_pred EeCCCCCHHHHHHHHHHHHhcC
Q 012929 354 CGFPGETDEDFNQTVNLIKEYK 375 (453)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~ 375 (453)
+||.|-+.+.-.++++-++.++
T Consensus 172 ~gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 172 ILPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCCTTTSTHHHHHHHHHHHHHT
T ss_pred CCccccCHHHHHHHHHHHHHHH
Confidence 9998888876656666665553
No 39
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=63.67 E-value=1.8 Score=38.24 Aligned_cols=73 Identities=16% Similarity=0.332 Sum_probs=32.2
Q ss_pred ceEEEEeeCCCcChhHHHHHHHH-----HHHcCC-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC--EEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP--LVV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~-----L~~~g~-~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~--vVv 130 (453)
..+++.++||. -.+-|.|+.. |...|. .....+..||+.+| +=+|+..... ..+.+.+.. .+++ |.+
T Consensus 34 ~slW~~~~gc~--cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliV-eG~Vt~~m~~-~l~~~~e~~-p~pk~VIAv 108 (181)
T 3i9v_6 34 NSLWPATFGLA--CCAIEMMASTDARNDLARFGSEVFRASPRQADVMIV-AGRLSKKMAP-VMRRVWEQM-PDPKWVISM 108 (181)
T ss_dssp TSCCCEEEECS--THHHHHTTTTTTC----------------CCCCEEE-ESCCBTTTHH-HHHHHHHSS-CSSCCEEEE
T ss_pred CCcccccCCCC--chHHHHHHhhhchhhHHHcCcccccCCCCCceEEEE-eccCCcccHH-HHHHHHHHc-CCCceEEEe
Confidence 35677777773 3344433221 344455 34556789999999 6688765432 223333322 2333 446
Q ss_pred EccccC
Q 012929 131 AGCVPQ 136 (453)
Q Consensus 131 gGc~a~ 136 (453)
|-|...
T Consensus 109 GsCA~~ 114 (181)
T 3i9v_6 109 GACASS 114 (181)
T ss_dssp HHHHHS
T ss_pred eccccc
Confidence 767544
No 40
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=62.08 E-value=70 Score=31.38 Aligned_cols=141 Identities=8% Similarity=0.073 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (453)
.+.+.++.++-++.|.+.|+..|.... .... ....+.++.+.+... . ..+....... . +++...
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~--~---~~v~~~~r~~-~---~di~~a 83 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGL--K---AKVVTHIQCR-L---DAAKVA 83 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC--S---SEEEEEEESC-H---HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCC--C---cEEEEEcccC-h---hhHHHH
Confidence 477899999999999999999998853 1111 233556677665321 1 2222111111 1 223333
Q ss_pred HhCCCCceeeecccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhCCC--cEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vLk~m~R~~--t~e~~~~~i~~lr~~~pg--i~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.+. +...+++-+ +.|+-..+.+++.. ..+.+.+.++.+++. | +.+..++.-++ .-+.+.+.+.++.+.++
T Consensus 84 ~~~--g~~~v~i~~-~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~~~~ 157 (382)
T 2ztj_A 84 VET--GVQGIDLLF-GTSKYLRAPHGRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAVAPY 157 (382)
T ss_dssp HHT--TCSEEEEEE-CC--------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHHGGG
T ss_pred HHc--CCCEEEEEe-ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHHHh
Confidence 442 446677655 55664444333321 235588889999999 8 98888887664 55678888888888888
Q ss_pred CCCeEEEE
Q 012929 375 KFPQVHIS 382 (453)
Q Consensus 375 ~~~~i~i~ 382 (453)
.+.+.+-
T Consensus 158 -a~~i~l~ 164 (382)
T 2ztj_A 158 -VDRVGLA 164 (382)
T ss_dssp -CSEEEEE
T ss_pred -cCEEEec
Confidence 7776654
No 41
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=59.87 E-value=1.6e+02 Score=30.36 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=84.3
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCceEEEEe--cC-------CcChh
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGM--TN-------PPFIL 289 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg-~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~--~~-------p~~i~ 289 (453)
..+.++.++-++.|.+.|+..|...+.-.+... +-....-.+.++.+.+.++ +. .+..-. .| |+.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~--~~-~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP--NS-RLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT--TS-CEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCC--CC-EEEEEeccccccCcccCccccc
Confidence 467888888888998999999998763210000 0001233677777776554 32 222111 01 22222
Q ss_pred HHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE--EEeCCCCCHHHHHHH
Q 012929 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 367 (453)
Q Consensus 290 ~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~--IvG~PgET~ed~~~t 367 (453)
+.. +...... +...+++-. +.|+- +.+.+.++.+++. |..+.+.| ..|.+ -+.+.+.+.
T Consensus 120 ~~~--ve~a~~a--Gvd~vrIf~-s~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~~~~~ 180 (539)
T 1rqb_A 120 DRF--VDKSAEN--GMDVFRVFD-AMNDP-----------RNMAHAMAAVKKA--GKHAQGTICYTISPV-HTVEGYVKL 180 (539)
T ss_dssp HHH--HHHHHHT--TCCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCSTT-CCHHHHHHH
T ss_pred HHH--HHHHHhC--CCCEEEEEE-ehhHH-----------HHHHHHHHHHHHC--CCeEEEEEEeeeCCC-CCHHHHHHH
Confidence 222 3444443 335555432 33332 5578999999999 98886666 44544 478889999
Q ss_pred HHHHHhcCCCeEEEE
Q 012929 368 VNLIKEYKFPQVHIS 382 (453)
Q Consensus 368 l~~i~~l~~~~i~i~ 382 (453)
++.+.+++.+.+.+-
T Consensus 181 a~~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 181 AGQLLDMGADSIALK 195 (539)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEeC
Confidence 999999998877664
No 42
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=58.46 E-value=49 Score=31.17 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=78.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~------~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~ 291 (453)
.+..+++.+++.++.+++.|..-|-+-++.+. -|... ..++..+++.+.+.. ...+.+.+.+|..+.
T Consensus 32 g~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-Pga~~v~~~eE~~rv~pvi~~l~~~~----~~piSIDT~~~~va~-- 104 (282)
T 1aj0_A 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTR-PGAAEVSVEEELQRVIPVVEAIAQRF----EVWISVDTSKPEVIR-- 104 (282)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHH--
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEeCCCHHHHH--
Confidence 34567899999999999999998887664331 12111 124555666665432 245666654442111
Q ss_pred HHHHHHHHhC-CCCceeeecccCCCCHHHHHh-------------------hcCC--CC------HHHHHHHHHHHHHhC
Q 012929 292 LKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSA-------------------MNRE--YT------LSDFRTVVDTLIELV 343 (453)
Q Consensus 292 l~~l~~l~~~-~~~~~~l~iglESgs~~vLk~-------------------m~R~--~t------~e~~~~~i~~lr~~~ 343 (453)
..++. ..+.+.++-+ .++++++. |... |. .+.+.+.++.+.++
T Consensus 105 -----aAl~aGa~iINdvsg~---~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~- 175 (282)
T 1aj0_A 105 -----ESAKVGAHIINDIRSL---SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA- 175 (282)
T ss_dssp -----HHHHTTCCEEEETTTT---CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHHHcCCCEEEECCCC---CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc-
Confidence 11111 1122222221 23333322 1111 11 57788888899998
Q ss_pred CCcE---EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 344 pgi~---v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
|+. +..|--+|| +.|.++-.++++-+.++
T Consensus 176 -Gi~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 176 -GIAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred -CCChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 875 888888888 77877655555555544
No 43
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=54.30 E-value=7.6 Score=36.12 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhhh-cCCccEEEcC--CChhHHHHHH
Q 012929 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGV--QQIDRVVEVV 162 (453)
Q Consensus 95 ~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~-~~~~d~vvG~--~~~~~l~~~l 162 (453)
+||+++|+..|+.+.+-.+ +++.. +....+|+.|+.++..|++. ....+.+-|. .+.+.+.+.+
T Consensus 164 ~~D~v~iTGsTlvN~Ti~~---lL~~~-~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i 230 (249)
T 3npg_A 164 EVDGIIASASCIVNGTLDM---ILDRA-KKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKL 230 (249)
T ss_dssp GCSEEEEETTHHHHTCHHH---HHHHC-SSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHH
T ss_pred cCCEEEEEeeeeccCCHHH---HHHhC-cccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHH
Confidence 6999999888888875443 44544 33456899999999999853 5555544443 2334444444
No 44
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=53.84 E-value=53 Score=31.18 Aligned_cols=140 Identities=14% Similarity=0.221 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--C---CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d-~--~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
++.+++.+++.++.+++.|..-|-+-++.+.. |.. . . .++..+++.+.+.. ...+.+.+.+|..+..-
T Consensus 58 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP-ga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSIDT~~~~V~~aA- 131 (297)
T 1tx2_A 58 SYNEVDAAVRHAKEMRDEGAHIIDIGGESTRP-GFAKVSVEEEIKRVVPMIQAVSKEV----KLPISIDTYKAEVAKQA- 131 (297)
T ss_dssp BHHHHHHHHHHHHHHHHTTCSEEEEESCC-----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEECSCHHHHHHH-
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEeCCCHHHHHHH-
Confidence 35578999999999999999988876643211 211 1 1 12344446655432 24566765554322111
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhc-----------CC---C------CHHHHHHHHHHHHHhCCCcE---EE
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------RE---Y------TLSDFRTVVDTLIELVPGMQ---IA 349 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~-----------R~---~------t~e~~~~~i~~lr~~~pgi~---v~ 349 (453)
+. .-..+.+.++ -...++++++.+. ++ | -.+.+.+.++.+.++ |+. +.
T Consensus 132 --l~---aGa~iINdvs--g~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~Ii 202 (297)
T 1tx2_A 132 --IE---AGAHIINDIW--GAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENII 202 (297)
T ss_dssp --HH---HTCCEEEETT--TTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEE
T ss_pred --HH---cCCCEEEECC--CCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEE
Confidence 11 1122333332 2223556654321 11 1 036677788888888 876 88
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 350 TDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 350 ~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.|--+|| +-|.++-.++++-+.++
T Consensus 203 lDPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 203 LDPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp EECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred EeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 8888888 77877655555555444
No 45
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=51.31 E-value=86 Score=28.83 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=76.3
Q ss_pred cccCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~--eI~l~~~d~---~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
.-+.+..++-+|++.+.+.|++ ++-+.|..| .++| ...++.+.+..+. ......+...+|.. .
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~---~- 101 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDA---L- 101 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHH---H-
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHH---H-
Confidence 5567788899999999988876 555666544 2333 4677777665420 12234444345532 2
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~ 372 (453)
+..+++ .++.++++..|+.. +..+.++.+++. |+.+...+- |+...+.++..++
T Consensus 102 --i~~~~~--aGAd~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gvaln---p~Tp~e~l~~~l~--- 155 (246)
T 3inp_A 102 --IESFAK--AGATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLALN---PATGIDCLKYVES--- 155 (246)
T ss_dssp --HHHHHH--HTCSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEEEC---TTCCSGGGTTTGG---
T ss_pred --HHHHHH--cCCCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEEec---CCCCHHHHHHHHh---
Confidence 222222 35578888888763 246778888888 988776654 3333333322222
Q ss_pred hcCCCeEEEEecccCCCC
Q 012929 373 EYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 373 ~l~~~~i~i~~~sp~pGT 390 (453)
.+|.+.+ .+-.||.
T Consensus 156 --~vD~Vlv--MsV~PGf 169 (246)
T 3inp_A 156 --NIDRVLI--MSVNPGF 169 (246)
T ss_dssp --GCSEEEE--ECSCTTC
T ss_pred --cCCEEEE--eeecCCC
Confidence 3565544 3556665
No 46
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=50.11 E-value=78 Score=30.08 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=69.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE-e--cCCcC--hhHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-M--TNPPF--ILEHLK 293 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~-~--~~p~~--i~~~l~ 293 (453)
+.++.+++.+.+..+.+.|++.|..+..|....+......-.+|++.+.+. +...+... | .+|.. ...+++
T Consensus 92 ~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~----~~f~IgvA~yPE~Hp~a~~~~~d~~ 167 (304)
T 3fst_A 92 IDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVAAYPEVHPEAKSAQADLL 167 (304)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH----CCCEEEEEECTTCCTTCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCcCCCCCCHHHHHH
Confidence 346888999999999999999998775565443321124557788877653 23344443 1 12322 222222
Q ss_pred HHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCCCHHHHHHH
Q 012929 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 367 (453)
Q Consensus 294 ~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~-PgET~ed~~~t 367 (453)
.|.+-.. .++.++. -| =-|+.+.+.+.++.+++. |+. .-+|.|+ |=-+...+...
T Consensus 168 ~Lk~Kvd--AGAdf~i--TQ-----------~ffD~~~~~~f~~~~r~~--Gi~--vPIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 168 NLKRKVD--AGANRAI--TQ-----------FFFDVESYLRFRDRCVSA--GID--VEIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHH--HTCCEEE--EC-----------CCSCHHHHHHHHHHHHHT--TCC--SCEECEECCCSCHHHHHHH
T ss_pred HHHHHHH--cCCCEEE--eC-----------ccCCHHHHHHHHHHHHhc--CCC--CcEEEEecccCCHHHHHHH
Confidence 2222111 2323311 01 136788899999999998 764 2466675 34445444433
No 47
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=48.67 E-value=2.3e+02 Score=28.60 Aligned_cols=140 Identities=8% Similarity=0.101 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCCceEEEEecC----------CcCh
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTN----------PPFI 288 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg-~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~----------p~~i 288 (453)
..+.++.++-++.|.+.|+..|...+.-.+... +-....-.+.++.+.+.++ +. .+... +. |+.+
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~--~~-~l~~l-~R~~N~~G~~~~~ddv 101 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMP--NT-PLQML-LRGQNLLGYRHYADDV 101 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCS--SS-CEEEE-ECGGGTTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCC--CC-eEEEE-eccccccCcccccchh
Confidence 467788888888888889999988763210000 0001234677777776554 32 22211 11 2222
Q ss_pred hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE--EEeCCCCCHHHHHH
Q 012929 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQ 366 (453)
Q Consensus 289 ~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~--IvG~PgET~ed~~~ 366 (453)
.+.. +...... +...+++-. +.|+- +.+.+.++.+++. |..+..++ ..|.+ -+.+.+.+
T Consensus 102 ~~~~--v~~a~~~--Gvd~i~if~-~~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~~~~ 162 (464)
T 2nx9_A 102 VDTF--VERAVKN--GMDVFRVFD-AMNDV-----------RNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQTWVD 162 (464)
T ss_dssp HHHH--HHHHHHT--TCCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHHHHHH
T ss_pred hHHH--HHHHHhC--CcCEEEEEE-ecCHH-----------HHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHHHHHH
Confidence 2221 3333333 335555432 33332 4678899999999 98887777 44544 47889999
Q ss_pred HHHHHHhcCCCeEEEE
Q 012929 367 TVNLIKEYKFPQVHIS 382 (453)
Q Consensus 367 tl~~i~~l~~~~i~i~ 382 (453)
.++.+.+++.+.+.+-
T Consensus 163 ~a~~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 163 VAQQLAELGVDSIALK 178 (464)
T ss_dssp HHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999998877664
No 48
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=46.03 E-value=1.4e+02 Score=27.85 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=72.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC---cCC---CHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d---~~~---~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
++.+++.+++.++.+++.|..-|-+-++.+. -|.. ... ++..+++.+.+. ...+.+.+.+|..+
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-pga~~v~~~eE~~Rv~pvi~~l~~~-----~~piSIDT~~~~va---- 93 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSR-PGATRVDPAVETSRVIPVVKELAAQ-----GITVSIDTMRADVA---- 93 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHT-----TCCEEEECSCHHHH----
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCC-CCCCCCCHHHHHHHHHHHHHHhhcC-----CCEEEEeCCCHHHH----
Confidence 4568999999999999999998887664321 1211 112 334444444431 23466665443211
Q ss_pred HHHHHHHhCC-CCceeeecccCCCCHHHHHh-------------------hcCC---C-C-----HHHHHHHHHHHHHhC
Q 012929 293 KEIAEVLRHP-CVYSFLHVPVQSGSDAVLSA-------------------MNRE---Y-T-----LSDFRTVVDTLIELV 343 (453)
Q Consensus 293 ~~l~~l~~~~-~~~~~l~iglESgs~~vLk~-------------------m~R~---~-t-----~e~~~~~i~~lr~~~ 343 (453)
...++.+ .+.+.++- ...++++++. |.+. | + .+.+.+.++.+.++
T Consensus 94 ---~aAl~aGa~iINdvsg--~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~- 167 (280)
T 1eye_A 94 ---RAALQNGAQMVNDVSG--GRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA- 167 (280)
T ss_dssp ---HHHHHTTCCEEEETTT--TSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT-
T ss_pred ---HHHHHcCCCEEEECCC--CCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc-
Confidence 1111111 12222221 1123333322 1111 1 1 56677888888988
Q ss_pred CCcE---EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 344 PGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 344 pgi~---v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
|+. +..|=-+|| +.|.++-.++++-+.++
T Consensus 168 -Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 168 -GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp -TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred -CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 875 888888898 56766655565555544
No 49
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=44.75 E-value=95 Score=24.00 Aligned_cols=96 Identities=7% Similarity=0.054 Sum_probs=54.9
Q ss_pred cChhHHHHHHHHHHHcCCeee---CCC---------CCCcEEEEeecccccchHHHHHHHHHHHhhCC--CCEE-EEccc
Q 012929 70 HNQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLV-VAGCV 134 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~---~~~---------~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~vV-vgGc~ 134 (453)
-|....+.+...|.+.||+++ .+. ..+|+++++... ... ...+.++++++.+ .+|| +++..
T Consensus 9 d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~---~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 9 DHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGV---NGIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSS---CHHHHHHHHHHTTCCSEEEEEECC-
T ss_pred CCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCC---ChHHHHHHHHhcCCCCeEEEEeCCC
Confidence 355667788889999998875 222 246999996432 221 2345556665543 3444 55533
Q ss_pred cCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 135 PQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 135 a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
...... ......+ .+.-+-....+.+.++....|.
T Consensus 85 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 85 DHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp --CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 222221 2234444 4666656678888888877664
No 50
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=44.14 E-value=1.1e+02 Score=23.58 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-- 125 (453)
++|.|+. -+....+.+...|.+.||.+... ....|+++++... -. ....+.++++++.+
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~---~~g~~~~~~l~~~~~~ 79 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM-PR---MNGLKLLEHIRNRGDQ 79 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHTTCC
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC-CC---CCHHHHHHHHHhcCCC
Confidence 4666653 46667788888999999887532 3457999996432 11 12345555555543
Q ss_pred CCEE-EEccccCCch-hhhcCCccE-EEcCC-ChhHHHHHHHHHhcC
Q 012929 126 KPLV-VAGCVPQGSR-DLKELEGVS-IVGVQ-QIDRVVEVVEETLKG 168 (453)
Q Consensus 126 ~~vV-vgGc~a~~~~-e~~~~~~d~-vvG~~-~~~~l~~~l~~~~~g 168 (453)
.+|| +++....... +......+. +.-+- ....+...++..+.+
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 4544 5553321111 111334444 55554 556788888776654
No 51
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.69 E-value=35 Score=31.76 Aligned_cols=77 Identities=9% Similarity=0.169 Sum_probs=42.7
Q ss_pred CCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC
Q 012929 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (453)
Q Consensus 57 ~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~ 125 (453)
.|+++-|+. | ..-...+..+...|++.||++.-. ..+.|+||+....-..-.+.. .+.++.+-+.|
T Consensus 3 ~m~~vLiV~-g-~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~-~~~L~~yV~~G 79 (259)
T 3rht_A 3 AMTRVLYCG-D-TSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQA-IDQLVTMVKAG 79 (259)
T ss_dssp ---CEEEEE-S-SCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHH-HHHHHHHHHTT
T ss_pred CCceEEEEC-C-CCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHH-HHHHHHHHHhC
Confidence 367777772 1 112346688999999999987421 136799988532211112223 34445444455
Q ss_pred C-CEEEEccccC
Q 012929 126 K-PLVVAGCVPQ 136 (453)
Q Consensus 126 ~-~vVvgGc~a~ 136 (453)
. -|++||....
T Consensus 80 GgLi~~gG~~s~ 91 (259)
T 3rht_A 80 CGLVMLGGWESY 91 (259)
T ss_dssp CEEEEECSTTSS
T ss_pred CeEEEecCcccc
Confidence 4 5677887654
No 52
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=42.14 E-value=1.2e+02 Score=23.66 Aligned_cols=94 Identities=12% Similarity=0.167 Sum_probs=53.8
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EEcccc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVP 135 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a 135 (453)
-+....+.+...|...||++... ...+|+++++. .-. ....+.++.+++. +.+|| +++- .
T Consensus 12 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~---~~g~~~~~~l~~~~~~~pii~ls~~-~ 85 (142)
T 2qxy_A 12 ESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEG---EESLNLIRRIREEFPDTKVAVLSAY-V 85 (142)
T ss_dssp SCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTT---HHHHHHHHHHHHHCTTCEEEEEESC-C
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCC---CcHHHHHHHHHHHCCCCCEEEEECC-C
Confidence 35566778888888889887532 34589999975 322 2234555655543 34555 4443 2
Q ss_pred CCchhh--hcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 136 QGSRDL--KELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 136 ~~~~e~--~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
...... .....+ .+.-+-....+...+.....+.
T Consensus 86 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 86 DKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 211111 122333 5666667778888887766553
No 53
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=41.83 E-value=7.6 Score=27.65 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=20.5
Q ss_pred EEEeCCCCCCCccccccccccCccccCCHH
Q 012929 195 ILPINVGCLGACTYCKTKHARGHLGSYTVE 224 (453)
Q Consensus 195 ~i~isrGC~~~CsFC~~~~~rg~~rsr~~e 224 (453)
+|+...|||+ |.+|..+...|-.--..|+
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~i~dP~ 37 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLIVINPE 37 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEEESCTT
T ss_pred cccCCCCCCC-CCCCccCCEeeEEEEeCCc
Confidence 3567789998 9999877666765444444
No 54
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=41.72 E-value=2e+02 Score=26.05 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=73.6
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.|..++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.++ + ..+..+.+- ..+. +..
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~--~-~~iGaGTVl---t~~~---a~~ 101 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP--E-MLIGAGTIL---NGEQ---ALA 101 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT--T-CEEEEECCC---SHHH---HHH
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC--C-CEEeECCcC---CHHH---HHH
Confidence 567788999999999999999998885321 233688888887764 2 334444221 1222 333
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
... .++.+++.|- .++ +.++.++++ |+.+.. |. -|..+..+. .+++.+
T Consensus 102 Ai~--AGA~fIvsP~--~~~----------------~vi~~~~~~--gi~~ip----Gv--~TptEi~~A----~~~Gad 149 (232)
T 4e38_A 102 AKE--AGATFVVSPG--FNP----------------NTVRACQEI--GIDIVP----GV--NNPSTVEAA----LEMGLT 149 (232)
T ss_dssp HHH--HTCSEEECSS--CCH----------------HHHHHHHHH--TCEEEC----EE--CSHHHHHHH----HHTTCC
T ss_pred HHH--cCCCEEEeCC--CCH----------------HHHHHHHHc--CCCEEc----CC--CCHHHHHHH----HHcCCC
Confidence 333 3456777652 233 445566667 765533 32 266665553 567888
Q ss_pred eEEEEecccCCC
Q 012929 378 QVHISQFYPRPG 389 (453)
Q Consensus 378 ~i~i~~~sp~pG 389 (453)
.+.+|+..+..|
T Consensus 150 ~vK~FPa~~~gG 161 (232)
T 4e38_A 150 TLKFFPAEASGG 161 (232)
T ss_dssp EEEECSTTTTTH
T ss_pred EEEECcCccccC
Confidence 888776654433
No 55
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.49 E-value=1.2e+02 Score=23.33 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=57.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-- 125 (453)
++|.|+ .-+....+.+...|.+.||++... ....|+++++...-.. ...+.++++++..
T Consensus 7 ~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~----~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 7 KRILVV----DDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKL----DGLDVIRSLRQNKVA 78 (132)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTB----CHHHHHHHHHTTTCS
T ss_pred ccEEEE----ECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCC----CHHHHHHHHHhcCcc
Confidence 355554 346667778888898889877532 2457999996532211 2345566665533
Q ss_pred --CCEEEEccccCCch-hhhcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 126 --KPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 126 --~~vVvgGc~a~~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
++|++..-...... +......+ .+.-+-....+.+.|.....+.
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 45555543322211 11123444 4666667777888877766553
No 56
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=41.18 E-value=84 Score=26.55 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=45.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++|++ +||.....=.+.++..|...|+..... ..+-|++++=|-+ ..+ ..+.+.++.+|++|.+|| +
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCcEEEE
Confidence 35655 577777777788888888888754321 2344776664433 222 346778888999998765 5
Q ss_pred Eccc
Q 012929 131 AGCV 134 (453)
Q Consensus 131 gGc~ 134 (453)
++-.
T Consensus 116 T~~~ 119 (180)
T 1jeo_A 116 VCEC 119 (180)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6543
No 57
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=39.49 E-value=93 Score=24.27 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=57.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcC-CeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g-~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~- 124 (453)
+++|.|+. -+....+.+...|...| |++... ...+|++++....-. ....+.++++++.
T Consensus 14 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~----~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 14 RKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD----LLGKPGIVEARALW 85 (135)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG----GGGSTTHHHHHGGG
T ss_pred CcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC----chHHHHHHHHHhhC
Confidence 45777653 46677788999999999 887532 345799999653211 1123344545443
Q ss_pred -CCCE-EEEccccCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhcC
Q 012929 125 -KKPL-VVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 125 -~~~v-VvgGc~a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~g 168 (453)
+.+| ++++........ ......+ .+.-+-....+...+.....+
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 3454 455533211111 1233444 466666767777777665543
No 58
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=39.13 E-value=2.2e+02 Score=25.66 Aligned_cols=130 Identities=9% Similarity=0.132 Sum_probs=72.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~e--I~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
-+.+.-++-++++.+ +.|+.. +.+.|.+|-. ....+ ...++.+.+... ......+...+|....+ .+.
T Consensus 8 la~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvp-n~t~G---~~~v~~lr~~~~--~~~dvhLmv~dp~~~i~---~~~ 77 (231)
T 3ctl_A 8 MCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVP-NLTLS---PFFVSQVKKLAT--KPLDCHLMVTRPQDYIA---QLA 77 (231)
T ss_dssp GGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSS-CCCBC---HHHHHHHHTTCC--SCEEEEEESSCGGGTHH---HHH
T ss_pred hhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCc-cchhc---HHHHHHHHhccC--CcEEEEEEecCHHHHHH---HHH
Confidence 345666788999999 888774 5555544221 11111 567788765321 22344454445543222 122
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
+ .++.++.+..|+.++ ...+.++.+++. |+.+...+ -|+...+.++..++ .+
T Consensus 78 ---~--aGAd~itvh~Ea~~~-------------~~~~~i~~i~~~--G~k~gv~l---np~tp~~~~~~~l~-----~~ 129 (231)
T 3ctl_A 78 ---R--AGADFITLHPETING-------------QAFRLIDEIRRH--DMKVGLIL---NPETPVEAMKYYIH-----KA 129 (231)
T ss_dssp ---H--HTCSEEEECGGGCTT-------------THHHHHHHHHHT--TCEEEEEE---CTTCCGGGGTTTGG-----GC
T ss_pred ---H--cCCCEEEECcccCCc-------------cHHHHHHHHHHc--CCeEEEEE---ECCCcHHHHHHHHh-----cC
Confidence 2 244677777776311 245788899999 98887666 56654444433222 46
Q ss_pred CeEEEEeccc
Q 012929 377 PQVHISQFYP 386 (453)
Q Consensus 377 ~~i~i~~~sp 386 (453)
|.+.+....|
T Consensus 130 D~VlvmsV~p 139 (231)
T 3ctl_A 130 DKITVMTVDP 139 (231)
T ss_dssp SEEEEESSCT
T ss_pred CEEEEeeecc
Confidence 7666655554
No 59
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=38.57 E-value=82 Score=26.78 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=45.8
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~-------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++|++ +||.....=...++..|...|+...- ...+-|++++=|-+ ..+ ..+.+.++.+|++|.+|| +
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 112 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGS--GET-KSLIHTAAKAKSLHGIVAAL 112 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCEEEEE
Confidence 35555 57777777788888889888875432 12344776663433 333 356778889999998765 5
Q ss_pred Ecc
Q 012929 131 AGC 133 (453)
Q Consensus 131 gGc 133 (453)
++.
T Consensus 113 T~~ 115 (186)
T 1m3s_A 113 TIN 115 (186)
T ss_dssp ESC
T ss_pred ECC
Confidence 554
No 60
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=38.36 E-value=2.1e+02 Score=25.40 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 328 t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
+.+.+.+.++.+++. |... |++.|+ .+.+.+..+.+++.++
T Consensus 87 ~~~~~~~~i~~A~~l--Ga~~----v~~~p~--~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 87 SEEEIDRAFDYAKRV--GVKL----IVGVPN--YELLPYVDKKVKEYDF 127 (257)
T ss_dssp SHHHHHHHHHHHHHH--TCSE----EEEEEC--GGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh--CCCE----EEecCC--HHHHHHHHHHHHHcCC
Confidence 345555555555555 4322 222343 3445555555555554
No 61
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=38.19 E-value=1.2e+02 Score=23.63 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=58.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-- 125 (453)
++|.|+. -+....+.+...|.+.||++... ....|+++++. ..-.. .....+.++++++.+
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~-~l~~~-~~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 7 PIIYLVD----HQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEA-HLEDK-KDSGIELLETLVKRGFH 80 (136)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEET-TGGGB-TTHHHHHHHHHHHTTCC
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeC-cCCCC-CccHHHHHHHHHhCCCC
Confidence 4555542 35666778888888889987532 34579999963 22110 023456667666643
Q ss_pred CCE-EEEccccCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhcC
Q 012929 126 KPL-VVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 126 ~~v-VvgGc~a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~g 168 (453)
.+| ++++........ ......+ .+.-+-....+...++....+
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 454 455543211111 1233444 466666667788877776554
No 62
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=37.73 E-value=2.2e+02 Score=25.40 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~--l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
+-...++.++++.+.+.|+..+. ..|..+-. .... -.++++++.+... ......+...+|....+ ...
T Consensus 13 a~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp---~~~~-g~~~v~~lr~~~~--~~~~vhlmv~dp~~~i~---~~~- 82 (230)
T 1tqj_A 13 SADFSRLGEEIKAVDEAGADWIHVDVMDGRFVP---NITI-GPLIVDAIRPLTK--KTLDVHLMIVEPEKYVE---DFA- 82 (230)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS---CBCB-CHHHHHHHGGGCC--SEEEEEEESSSGGGTHH---HHH-
T ss_pred ecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCc---chhh-hHHHHHHHHhhcC--CcEEEEEEccCHHHHHH---HHH-
Confidence 44567788899999888988654 43332211 1111 1477788765421 11222343334422221 122
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~ 377 (453)
+ .+...++++.++.. .+...+.++.+++. |+.+...+ -|+...+.++..+ . ..+
T Consensus 83 --~--aGadgv~vh~e~~~------------~~~~~~~~~~i~~~--g~~~gv~~---~p~t~~e~~~~~~----~-~~D 136 (230)
T 1tqj_A 83 --K--AGADIISVHVEHNA------------SPHLHRTLCQIREL--GKKAGAVL---NPSTPLDFLEYVL----P-VCD 136 (230)
T ss_dssp --H--HTCSEEEEECSTTT------------CTTHHHHHHHHHHT--TCEEEEEE---CTTCCGGGGTTTG----G-GCS
T ss_pred --H--cCCCEEEECccccc------------chhHHHHHHHHHHc--CCcEEEEE---eCCCcHHHHHHHH----h-cCC
Confidence 2 24578888888321 01245677888888 88776554 5655444432221 1 456
Q ss_pred eEEEEecccC
Q 012929 378 QVHISQFYPR 387 (453)
Q Consensus 378 ~i~i~~~sp~ 387 (453)
++.+....|-
T Consensus 137 ~v~~msv~pg 146 (230)
T 1tqj_A 137 LILIMSVNPG 146 (230)
T ss_dssp EEEEESSCC-
T ss_pred EEEEEEeccc
Confidence 6665555443
No 63
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.84 E-value=1e+02 Score=26.08 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=45.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~ 125 (453)
++|++ +||.....-.+.++..|...|..+... ..+-|++++=| ....+ ..+.+.++.+|++|
T Consensus 40 ~~I~i--~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS--~sG~t-~~~~~~~~~ak~~g 114 (187)
T 3sho_A 40 DHVIV--VGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVS--VWRYL-RDTVAALAGAAERG 114 (187)
T ss_dssp SEEEE--ECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEEC--CSSCC-HHHHHHHHHHHHTT
T ss_pred CEEEE--EecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCC
Confidence 35554 567677778888889998888664321 13447766633 33333 34677888899999
Q ss_pred CCEE-EEcc
Q 012929 126 KPLV-VAGC 133 (453)
Q Consensus 126 ~~vV-vgGc 133 (453)
.+|| +++.
T Consensus 115 ~~vi~IT~~ 123 (187)
T 3sho_A 115 VPTMALTDS 123 (187)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEeCC
Confidence 8766 5554
No 64
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=36.38 E-value=32 Score=27.60 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCee--eCC-------CCCCcEEEEeecccccchHHH--HHHHHHHHhh--CCCCEEEEccccC
Q 012929 76 EYMAGQLSAFGYAL--TDN-------SEEADIWLINTCTVKSPSQSA--MDTLIAKCKS--AKKPLVVAGCVPQ 136 (453)
Q Consensus 76 e~~~~~L~~~g~~~--~~~-------~~~AD~viinTCtv~~~a~~~--~~~~i~~~~~--~~~~vVvgGc~a~ 136 (453)
+.++..|.+.|+++ .+- ..++|.++|-|-+.....-.. +...++++.. .|+++.+-|++.+
T Consensus 18 ~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~ 91 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGW 91 (137)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESS
T ss_pred HHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCC
Confidence 34455566667764 221 236899999655443221122 6666776643 4666666566544
No 65
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=36.17 E-value=48 Score=28.13 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=47.2
Q ss_pred ceEEEEeeCCC-cChhH-------HHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 59 ETIYMKTFGCS-HNQSD-------SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 59 ~~~~i~t~GC~-~N~~d-------se~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
.+|||-|-|+. +|.+- .+++...|...|-+++++.+.-=-+||++=++.....-..-.++.++++.|.||.
T Consensus 25 s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIW 103 (151)
T 3oq0_A 25 SRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW 103 (151)
T ss_dssp CEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEE
T ss_pred CEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeee
Confidence 48999999985 44332 2666677889999999998765557776655543221122235677777777775
No 66
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=35.92 E-value=1.5e+02 Score=26.72 Aligned_cols=104 Identities=10% Similarity=0.134 Sum_probs=60.5
Q ss_pred cccCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhC-CCCCCceEEEEecCCcChhHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEH 291 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~--eI~l~~~d~---~~yg~d~~~~l~~Ll~~l~~~i-~~~~~~~ir~~~~~p~~i~~~ 291 (453)
.-+.+..++-++++.+.+.|+. ++-+.|..| .++| .++++++.+.. +. ....+.+...+|.. .
T Consensus 11 il~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~~-~~~dvhLmv~~p~~---~ 79 (228)
T 3ovp_A 11 ILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQD-PFFDMHMMVSKPEQ---W 79 (228)
T ss_dssp CTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCSS-SCEEEEEECSCGGG---G
T ss_pred heeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCCC-CcEEEEEEeCCHHH---H
Confidence 3456677788999999888887 455555444 2233 45677776542 20 11233444344532 2
Q ss_pred HHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Q 012929 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353 (453)
Q Consensus 292 l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I 353 (453)
.+ .+++ .++.++++..|+.. +..+.++.++++ |+.+...+-
T Consensus 80 i~---~~~~--aGad~itvH~Ea~~--------------~~~~~i~~i~~~--G~k~gval~ 120 (228)
T 3ovp_A 80 VK---PMAV--AGANQYTFHLEATE--------------NPGALIKDIREN--GMKVGLAIK 120 (228)
T ss_dssp HH---HHHH--HTCSEEEEEGGGCS--------------CHHHHHHHHHHT--TCEEEEEEC
T ss_pred HH---HHHH--cCCCEEEEccCCch--------------hHHHHHHHHHHc--CCCEEEEEc
Confidence 22 2222 34577888888763 145777888888 887655543
No 67
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=35.72 E-value=1.3e+02 Score=28.42 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC---cCC---CHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d---~~~---~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
++.+.+.+++.++.+++.|..-|-+-++.+.. |.. ... ++..+++.+.+. ...+.+.+.+|..+..-+
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~~-----~vpiSIDT~~~~Va~aAl 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLSL-----GVPVSVDTRKPEVAEEAL 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHTT-----CSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhC-----CCeEEEECCCHHHHHHHH
Confidence 45678999999999999999988876643321 211 112 344445555421 245666655543211111
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHh--------------------hcC--CCC------HHHHHHHHHHHHHhCC
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNR--EYT------LSDFRTVVDTLIELVP 344 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~--------------------m~R--~~t------~e~~~~~i~~lr~~~p 344 (453)
. .-..+.+-++-+ .+++++.. |.+ .|. .+.+.+.++.+.++
T Consensus 121 ---~---aGa~iINdVsg~---~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~-- 189 (294)
T 2dqw_A 121 ---K---LGAHLLNDVTGL---RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA-- 189 (294)
T ss_dssp ---H---HTCSEEECSSCS---CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ---H---hCCCEEEECCCC---CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC--
Confidence 0 111122222221 33343322 111 121 45677788888888
Q ss_pred CcE-EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 345 GMQ-IATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 345 gi~-v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
|+. +-.|=-+|| +.|.++-.++++-+.++
T Consensus 190 Gi~~IilDPG~Gf-~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 190 GVPQVVLDPGFGF-GKLLEHNLALLRRLDEI 219 (294)
T ss_dssp TCSCEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred CCCcEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 764 555555576 77877666666666554
No 68
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=35.41 E-value=43 Score=27.05 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCeee--C-------CCCCCcEEEEeecccccc-hHH-HHHHHHHHHhh--CCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVKSP-SQS-AMDTLIAKCKS--AKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~--~-------~~~~AD~viinTCtv~~~-a~~-~~~~~i~~~~~--~~~~vVvgGc~a~~ 137 (453)
+.|+..|.+.|+++. + +..++|.++|-|.+.-.. ... .+...++++.. .|+++.+=|++.+.
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSS
T ss_pred HHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCCC
Confidence 456666777786542 1 125789999966554322 111 35666666653 56777776776554
No 69
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=34.38 E-value=1.7e+02 Score=23.15 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=54.2
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhhCCCCEEEEccccC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~---~a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (453)
.+.+..+.-++...-++.+...|.... .....++|+-..|+. .+...+.++.+++++.|..+++.|+.++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l~~~~-------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVMGSIQ-------ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHSS-------SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CEEEEEEeeeEeehhHHHHHHHHHHhc-------cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 577888889999999999999987531 345788887666653 2344556667788889999999998765
Q ss_pred Cch
Q 012929 137 GSR 139 (453)
Q Consensus 137 ~~~ 139 (453)
...
T Consensus 93 v~~ 95 (130)
T 4dgh_A 93 VSQ 95 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 70
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=34.35 E-value=1.6e+02 Score=22.72 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=59.8
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~- 124 (453)
+.+|.|+. -|....+.+...|.+.||++... ...+|+++++.- .-.. ...+.++++++.
T Consensus 7 ~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l~~~---~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 7 RPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR-MQPE---SGLDLIRTIRASE 78 (136)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC-CSSS---CHHHHHHHHHTST
T ss_pred CCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc-CCCC---CHHHHHHHHHhcC
Confidence 45666643 46677788889999999987532 223899999642 2221 235556666654
Q ss_pred --CCCEE-EEccccCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 125 --KKPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 125 --~~~vV-vgGc~a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
+.+|| +++........ ......+ .+.-+-....+...++....|.
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 23454 44432111111 1233444 4667777788888888877664
No 71
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=33.45 E-value=1.7e+02 Score=27.26 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=43.8
Q ss_pred ceEEEEeeCCCcChhH-HHHHHHHHHHcC-Ceee--C-------------CCCCCcEEEEeecccccchHHHHHHHHHHH
Q 012929 59 ETIYMKTFGCSHNQSD-SEYMAGQLSAFG-YALT--D-------------NSEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~d-se~~~~~L~~~g-~~~~--~-------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~ 121 (453)
.|+-|++=+|.+.-.. ...|+..|++.| |++. . ...++|+||+|++.-.-.. + ..+.+.++
T Consensus 5 ~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~l~~-~-~~~~l~~y 82 (281)
T 4e5v_A 5 IKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWPE-E-TNRRFLEY 82 (281)
T ss_dssp EEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSCCCH-H-HHHHHHHH
T ss_pred eEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCcCCH-H-HHHHHHHH
Confidence 5788888888887322 367888888888 7763 2 2356899999886432222 2 23334445
Q ss_pred hhCCCCEEE
Q 012929 122 KSAKKPLVV 130 (453)
Q Consensus 122 ~~~~~~vVv 130 (453)
-+.|.-+|+
T Consensus 83 V~~Ggglv~ 91 (281)
T 4e5v_A 83 VQNGGGVVI 91 (281)
T ss_dssp HHTTCEEEE
T ss_pred HHcCCCEEE
Confidence 456765553
No 72
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=33.20 E-value=1.8e+02 Score=22.86 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=59.8
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcC-CeeeCC------------C-CCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN------------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g-~~~~~~------------~-~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..+|.|+. -+....+.+...|...| |+++.. . ...|+|+++.. .-. ....++++++++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~---~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA-ALD---TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT-TCC---HHHHHHHHHHHH
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC-CCC---ccHHHHHHHHHH
Confidence 46777763 46667788899999998 887532 1 56899999642 221 234555665554
Q ss_pred C--CCCEE-EEccccCCch-hhhcCCcc-EEEcCCChhHHHHHHHHHhcC
Q 012929 124 A--KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 124 ~--~~~vV-vgGc~a~~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~~~~g 168 (453)
. +.+|| +++....... +......+ .+.-+-....+...+.....+
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3 34444 5553211111 11133334 466666777788888776654
No 73
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=32.70 E-value=1.6e+02 Score=22.38 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=53.5
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CC-CCcEEEEeeccccc-chHHHHHHHHHHHhh--CCCCEE-EEcc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINTCTVKS-PSQSAMDTLIAKCKS--AKKPLV-VAGC 133 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~-~AD~viinTCtv~~-~a~~~~~~~i~~~~~--~~~~vV-vgGc 133 (453)
-+....+.+...|...||++... .. .+|+++++.. ... . ...+.++++++ .+.+|| +++.
T Consensus 13 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~-l~~~~---~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 13 DEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR-FCQPP---DGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC-CSSSS---CHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee-CCCCC---CHHHHHHHHHhcCCCCCEEEEeCC
Confidence 35556678888888889876432 22 6899999643 221 1 12344454443 345555 4443
Q ss_pred ccCCchhhhcCC-ccEEEcCCChhHHHHHHHHHhcCC
Q 012929 134 VPQGSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 134 ~a~~~~e~~~~~-~d~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
. ........+. ++.+.-+-....+...++....+.
T Consensus 89 ~-~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 89 A-ALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp C-CTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred c-cHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 3 2221122222 345666667778888887776654
No 74
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=32.69 E-value=2.5e+02 Score=25.65 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=60.0
Q ss_pred ceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHH--H--HhhcCCCCHHHHHHHHHHHHHhCCCcEEEEE
Q 012929 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV--L--SAMNREYTLSDFRTVVDTLIELVPGMQIATD 351 (453)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~v--L--k~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~ 351 (453)
..+.+.. -|.. +...++...++..+.-..||+|+|..+-.- + ..+.-+.+.+++...++...+.+|+..=-.+
T Consensus 28 ~pvT~Ai-~P~~--p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnN 104 (245)
T 2nly_A 28 IPVTVAV-MPFL--EHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNN 104 (245)
T ss_dssp SCEEEEE-CSSS--TTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCeEEEE-CCCC--CCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEec
Confidence 3566663 3331 222334444544443358999999987332 1 1122356889999999999999999543333
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 352 IICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 352 ~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
-|=+-=.++.+-++..++.+++.++
T Consensus 105 HmGS~~T~~~~~m~~vm~~l~~~gL 129 (245)
T 2nly_A 105 HMGSKIVENEKIMRAILEVVKEKNA 129 (245)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTC
T ss_pred ccccchhcCHHHHHHHHHHHHHCCC
Confidence 3322225678889999999988774
No 75
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=32.68 E-value=2.1e+02 Score=26.34 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=70.0
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.+..+++.+++.++.+++.|..-|-+-+ +.-..+....+..++..+.+. ....+.+.+.+|..+..- .+
T Consensus 19 g~~~~~~~a~~~a~~~v~~GAdiIDIg~---g~~~v~~~ee~~rvv~~i~~~----~~~pisIDT~~~~v~~aA----l~ 87 (262)
T 1f6y_A 19 IQERDPAPVQEWARRQEEGGARALDLNV---GPAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNIKAIEAG----LK 87 (262)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCSEEEEBC---C----CHHHHHHHHHHHHHTT----CCSEEEEECSCHHHHHHH----HH
T ss_pred hhcCCHHHHHHHHHHHHHCCCcEEEECC---CCCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCHHHHHHH----Hh
Confidence 4667899999999999999998776644 111111112344445444432 234566665554311111 01
Q ss_pred HHhCCCCceeeecccCCCCH--HHHHh----------hc---CC--CC----HHHHHHHHHHHHHhCCCcE---EEEEEE
Q 012929 298 VLRHPCVYSFLHVPVQSGSD--AVLSA----------MN---RE--YT----LSDFRTVVDTLIELVPGMQ---IATDII 353 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~--~vLk~----------m~---R~--~t----~e~~~~~i~~lr~~~pgi~---v~~~~I 353 (453)
......+.+-++.+ + ++ +++.. |. ++ .+ .+-+.+.++.+.++ |+. +-.|=.
T Consensus 88 a~~Ga~iINdvs~~-~--d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~--Gi~~~~IilDPg 162 (262)
T 1f6y_A 88 KCKNRAMINSTNAE-R--EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEF--GLPMEDLYIDPL 162 (262)
T ss_dssp HCSSCEEEEEECSC-H--HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHH--TCCGGGEEEECC
T ss_pred hCCCCCEEEECCCC-c--ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEeCC
Confidence 00011122222221 1 11 23321 11 11 12 24457788888888 874 888888
Q ss_pred EeCCCCCHH---HHHHHHHHHHh
Q 012929 354 CGFPGETDE---DFNQTVNLIKE 373 (453)
Q Consensus 354 vG~PgET~e---d~~~tl~~i~~ 373 (453)
+|..|-+.+ +..+.++.+++
T Consensus 163 ~g~~g~~~~~~~~~l~~l~~l~~ 185 (262)
T 1f6y_A 163 ILPANVAQDHAPEVLKTLQQIKM 185 (262)
T ss_dssp CCCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCcCCCChHHHHHHHHHHHHHHH
Confidence 874455544 34444444554
No 76
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=32.33 E-value=1.8e+02 Score=22.63 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=59.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHH-cCCeeeCC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhh--
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS-- 123 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~-~g~~~~~~-----------~-~~AD~viinTCtv~~~a~~~~~~~i~~~~~-- 123 (453)
++|.|+ .-+....+.+...|.+ .||+++.. . ...|+|+++. .. +......+.++++++
T Consensus 5 ~~iliv----dd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~-~l--~~~~~g~~~~~~l~~~~ 77 (140)
T 3lua_A 5 GTVLLI----DYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDI-AF--PVEKEGLEVLSAIRNNS 77 (140)
T ss_dssp CEEEEE----CSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECS-CS--SSHHHHHHHHHHHHHSG
T ss_pred CeEEEE----eCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeC-CC--CCCCcHHHHHHHHHhCc
Confidence 455544 3456667788888988 89987532 3 5689999964 22 201234556666655
Q ss_pred --CCCCEE-EEccccCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 124 --AKKPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 124 --~~~~vV-vgGc~a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
.+.+|| +++........ ......+ .+.-+-....+.+.++....+.
T Consensus 78 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 78 RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 344554 55533211111 1233444 4666666678888888877664
No 77
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.20 E-value=1.8e+02 Score=22.65 Aligned_cols=94 Identities=5% Similarity=0.014 Sum_probs=53.3
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EEcc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGC 133 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc 133 (453)
-+....+.+...|...||++... ...+|+|+++...- .. ...+.++++++. +.+|| +++.
T Consensus 11 d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~-~~---~g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP-KL---SGMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCS-SS---CHHHHHHHHHHHCTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC-CC---cHHHHHHHHHHhCCCCeEEEEECC
Confidence 45667778888888889876432 35789999975332 21 123444544443 34555 4443
Q ss_pred ccCCchh--hhcCCcc-EEEcCCChhHHHHHHHHHhcC
Q 012929 134 VPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 134 ~a~~~~e--~~~~~~d-~vvG~~~~~~l~~~l~~~~~g 168 (453)
. ..... ......+ .+.-+-....+...+.....+
T Consensus 87 ~-~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 87 G-DLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp T-CHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 2 21111 1233444 466666777788777766544
No 78
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=32.08 E-value=3.2e+02 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~ 281 (453)
.+++.+++-++.+.+.|+..|.|.| .. |.-.+..+.++++.+.+.++ ...+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T~---G~~~P~~v~~lv~~l~~~~~---~~~l~~H 207 (307)
T 1ydo_A 154 VPIEQVIRLSEALFEFGISELSLGD-TI---GAANPAQVETVLEALLARFP---ANQIALH 207 (307)
T ss_dssp CCHHHHHHHHHHHHHHTCSCEEEEC-SS---CCCCHHHHHHHHHHHHTTSC---GGGEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcC-CC---CCcCHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 3889999999999999999999875 33 32234567888888887653 2345554
No 79
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=31.73 E-value=1.5e+02 Score=21.72 Aligned_cols=89 Identities=9% Similarity=0.068 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC----CCC-EEEEccc
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKP-LVVAGCV 134 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~----~~~-vVvgGc~ 134 (453)
|....+.+...|...||++... ....|+++++...- .. ...+.++.+++. +.+ |++++..
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~---~~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQ---SCLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CC---THHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CC---CHHHHHHHHHhccccCCCCEEEEeCCC
Confidence 4556677888888888876432 12469999965332 21 123445555443 344 4455543
Q ss_pred cCCchhhhcCCccE-EEcCCChhHHHHHHHHH
Q 012929 135 PQGSRDLKELEGVS-IVGVQQIDRVVEVVEET 165 (453)
Q Consensus 135 a~~~~e~~~~~~d~-vvG~~~~~~l~~~l~~~ 165 (453)
... .......+. +.-+-....+...+...
T Consensus 86 -~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 86 -PVD-PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp -CSS-HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred -Cch-hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 222 322223343 33444445566655543
No 80
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.33 E-value=51 Score=29.05 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=54.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (453)
.||++++|+=..+.. +.+...| |+ |+... ++.+. +.+.+.++++++.|..+||||-.+...
T Consensus 95 ~kIavvg~~~~~~~~--~~~~~ll---~~---------~i~~~---~~~~~--~e~~~~i~~l~~~G~~vvVG~~~~~~~ 155 (196)
T 2q5c_A 95 NELALIAYKHSIVDK--HEIEAML---GV---------KIKEF---LFSSE--DEITTLISKVKTENIKIVVSGKTVTDE 155 (196)
T ss_dssp SEEEEEEESSCSSCH--HHHHHHH---TC---------EEEEE---EECSG--GGHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred CcEEEEeCcchhhHH--HHHHHHh---CC---------ceEEE---EeCCH--HHHHHHHHHHHHCCCeEEECCHHHHHH
Confidence 489999997665543 3455555 32 33333 33333 346778999999999999999776433
Q ss_pred hhhhcCCccEEEcCCChhHHHHHHHHHh
Q 012929 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 139 ~e~~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
.+ ++.-..++-......+...++++.
T Consensus 156 A~--~~Gl~~vli~sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 156 AI--KQGLYGETINSGEESLRRAIEEAL 181 (196)
T ss_dssp HH--HTTCEEEECCCCHHHHHHHHHHHH
T ss_pred HH--HcCCcEEEEecCHHHHHHHHHHHH
Confidence 32 333334555554567887776643
No 81
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=31.00 E-value=73 Score=30.53 Aligned_cols=145 Identities=11% Similarity=0.172 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--C---CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH-
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL- 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l- 292 (453)
++.+.+.+++.++++++.|..-|-+-++.+. -|... . .++..+++.+.+.++ ...+.+.+.++..+..-+
T Consensus 60 ~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTr-PG~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl~ 135 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVADGADVIDVGGVKAG-PGERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAACA 135 (318)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHHH
Confidence 4567899999999999999998887654321 23111 1 134444666665431 345677665543211111
Q ss_pred --------------HHHHHHHhCCCCceeeecccCCCCHHHHHhhcCC--CC----------HHHHHHHHHHHHHhCCCc
Q 012929 293 --------------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YT----------LSDFRTVVDTLIELVPGM 346 (453)
Q Consensus 293 --------------~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~--~t----------~e~~~~~i~~lr~~~pgi 346 (453)
+++..++.. ..+..+-+..+...++ .|.+. |. .+.+.+.++.+.++ |+
T Consensus 136 aGa~iINDVsg~~d~~m~~vaa~-~g~~vVlmh~~G~~p~---tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~a--GI 209 (318)
T 2vp8_A 136 AGADLINDTWGGVDPAMPEVAAE-FGAGLVCAHTGGALPR---TRPFRVSYGTTTRGVVDAVISQVTAAAERAVAA--GV 209 (318)
T ss_dssp HTCCEEEETTSSSSTTHHHHHHH-HTCEEEEECC----------------CCSCHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred hCCCEEEECCCCCchHHHHHHHH-hCCCEEEECCCCCCcc---ccccccccccccccHHHHHHHHHHHHHHHHHHc--CC
Confidence 011111111 1122222222211011 11111 10 25566778888888 87
Q ss_pred E---EEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 347 Q---IATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 347 ~---v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
. +..|=-+|| +.|.++-.++++-+.++
T Consensus 210 ~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 210 AREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp CGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred ChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 4 888888898 55655555555554443
No 82
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=30.53 E-value=1e+02 Score=26.80 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=45.1
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~-------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++|++ +||.....=.+.++..|...|..+.. ...+-|++++=|-+ ..+ ..+.+.++.+|+.|.+|| +
T Consensus 48 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~S--G~t-~~~i~~~~~ak~~g~~vI~I 122 (200)
T 1vim_A 48 RSIFV--IGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGS--GET-TSVVNISKKAKDIGSKLVAV 122 (200)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 35555 67777777788888888888865432 12344777764433 222 346777888888898766 5
Q ss_pred Ecc
Q 012929 131 AGC 133 (453)
Q Consensus 131 gGc 133 (453)
++-
T Consensus 123 T~~ 125 (200)
T 1vim_A 123 TGK 125 (200)
T ss_dssp ESC
T ss_pred ECC
Confidence 553
No 83
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=30.34 E-value=40 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCeeeCCCCCCcEEEE
Q 012929 77 YMAGQLSAFGYALTDNSEEADIWLI 101 (453)
Q Consensus 77 ~~~~~L~~~g~~~~~~~~~AD~vii 101 (453)
.+...|.+.||..+.+.+.||++|=
T Consensus 64 aV~~~L~akG~~~v~~~~~pDllV~ 88 (197)
T 4f54_A 64 AYTENMEAXGYQPAADXESADLGIQ 88 (197)
T ss_dssp HHHHHHHHTTCEECSSTTTCSEEEE
T ss_pred HHHHHHHhcCceecCCCCCCCEEEE
Confidence 3456778899999988889998765
No 84
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=30.22 E-value=3.5e+02 Score=26.43 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (453)
.+++++.++++.+++.|++.|.+.+.+...+ .+.. ..-.+.++++.+.+. ....+++. .|...-.++..++.+
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-aN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD-FHGRVSAPMAKVLIK 199 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE-CCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE-CCCCCCHHHHHHHHH
Confidence 4789999999999999999999855321110 0000 112456677766553 34456665 332221222222333
Q ss_pred HHhCCCCceeeecccCCCCHHHHHhhcC
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk~m~R 325 (453)
.++. ....++.=|+-..+-+.++.+++
T Consensus 200 ~L~~-~~i~~iEeP~~~~d~~~~~~l~~ 226 (405)
T 3rr1_A 200 ELEP-YRPLFIEEPVLAEQAETYARLAA 226 (405)
T ss_dssp HHGG-GCCSCEECSSCCSSTHHHHHHHT
T ss_pred HHHh-cCCCEEECCCCcccHHHHHHHHh
Confidence 3332 22346666665555555555544
No 85
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=30.20 E-value=2.4e+02 Score=27.70 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCc--EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 227 v~Ei~~l~~~G~~--eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+.|+..+.+.|+. .|.+.+.. .. .+-++.+.+. +...+.+. + .++++.+.+.+. .
T Consensus 109 ~~E~~~~r~~G~~~~~Il~~g~~-----k~-----~~~l~~a~~~----~v~~~~vd--s----~~el~~l~~~a~--~- 165 (419)
T 2plj_A 109 TGEVELVASEGVPADLTIHTHPI-----KR-----DADIRDALAY----GCNVFVVD--N----LNELEKFKAYRD--D- 165 (419)
T ss_dssp HHHHHHHHHTTCCGGGEEECCSS-----CC-----HHHHHHHHHH----TCCEEEEC--S----HHHHHTTGGGTT--T-
T ss_pred HHHHHHHHHcCCChhhEEEeCCC-----CC-----HHHHHHHHHC----CCCEEEeC--C----HHHHHHHHHhcC--C-
Confidence 5788888888984 57765521 11 2334444442 33223332 1 122222222211 1
Q ss_pred ceeeecccCCCCH-HHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEEE-EEEEeCCCCCHHHHHH
Q 012929 305 YSFLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIAT-DIICGFPGETDEDFNQ 366 (453)
Q Consensus 305 ~~~l~iglESgs~-~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~~-~~IvG~PgET~ed~~~ 366 (453)
..+++-+.++.+ .....|+| |.+.++..++++.+++. ++.+.. .+=+|--..+.+.+.+
T Consensus 166 -~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~Gl~~H~gs~~~~~~~~~~ 227 (419)
T 2plj_A 166 -VELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTTNPNKYVE 227 (419)
T ss_dssp -CEEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCTTCCCTHHHHH
T ss_pred -CCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEEEEEEECCCCCCCHHHHHH
Confidence 245566666532 22345888 67899999999999887 876543 2224543333344433
No 86
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.89 E-value=2.1e+02 Score=22.85 Aligned_cols=100 Identities=9% Similarity=0.053 Sum_probs=55.5
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeee-C--C---------CC--CCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-D--N---------SE--EADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~-~--~---------~~--~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
+.+|.|+ .-|....+.+...|.+.||+++ . + .. ..|+|+++... ... ...++++++++
T Consensus 36 ~~~Iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~---~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIV----DDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKM---DGITCLSNIME 107 (157)
T ss_dssp ECEEEEE----CSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSS---CHHHHHHHHHH
T ss_pred ceEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCc---cHHHHHHHHHh
Confidence 3467665 3477788889999999999876 2 1 12 57999996432 221 12444555544
Q ss_pred --CCCCEE-EEccccCCch-hhhcCCcc-EEEcCCChhHHHHHHHHH
Q 012929 124 --AKKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 124 --~~~~vV-vgGc~a~~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~~ 165 (453)
.+.+|| +++....... +......+ .+.-+-....+.+.|...
T Consensus 108 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred hCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 334555 4443211111 11233444 466666666777766654
No 87
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.82 E-value=1.8e+02 Score=22.02 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=52.1
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC----CCCE-EEEcc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPL-VVAGC 133 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~----~~~v-VvgGc 133 (453)
-+....+.+...|.+.||++... ....|+++++...-.. ...+.++++++. +.+| ++++.
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~----~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 11 DYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDT----SGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSS----BHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHhhhccCCCCEEEEECC
Confidence 35666778888888888876432 2457999996533221 234555666554 2344 45555
Q ss_pred ccCCchhhhcCCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 134 VPQGSRDLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 134 ~a~~~~e~~~~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
.............+ .+.-+-....+.+.+.....
T Consensus 87 ~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 87 AKNDLGKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp -CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 43333221122234 46667676777777765543
No 88
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=29.71 E-value=2.3e+02 Score=26.59 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=73.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CC---CHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~---~~---~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l 292 (453)
++.+++.+++.++.+++.|..-|-+-++.+. -|... .. ++..+++.+.+. ...+.+.+.+|..+..-+
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTr-Pga~~v~~~eE~~Rv~pvi~~l~~~-----~vpiSIDT~~~~Va~aAl 114 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTR-PGAPPVPLDEELARVIPLVEALRPL-----NVPLSIDTYKPAVMRAAL 114 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHGGG-----CSCEEEECCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHhhC-----CCeEEEECCCHHHHHHHH
Confidence 4567899999999999999998887664332 22111 11 233333333321 245666655543221111
Q ss_pred HHHHHHHhCCCCceeeecccCCCCHHHHHhhcC----------------------CCC------HHHHHHHHHHHHHhCC
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----------------------EYT------LSDFRTVVDTLIELVP 344 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R----------------------~~t------~e~~~~~i~~lr~~~p 344 (453)
. .-..+.+-++- .. +++++....+ .|. .+.+.+.++.+.++
T Consensus 115 ---~---aGa~iINdVsg--~~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~-- 183 (294)
T 2y5s_A 115 ---A---AGADLINDIWG--FR-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA-- 183 (294)
T ss_dssp ---H---HTCSEEEETTT--TC-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ---H---cCCCEEEECCC--CC-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc--
Confidence 0 11112222221 11 3333332111 111 45677888888888
Q ss_pred CcE---EEEEEEEeCCCCCH-HHHHHHHHHHHhcC
Q 012929 345 GMQ---IATDIICGFPGETD-EDFNQTVNLIKEYK 375 (453)
Q Consensus 345 gi~---v~~~~IvG~PgET~-ed~~~tl~~i~~l~ 375 (453)
|+. +..|=-+|| +.|. ++-.++++-+.+++
T Consensus 184 Gi~~~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 184 GVAAERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp TCCGGGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred CCChhhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 876 888888888 5666 55555666665554
No 89
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=29.62 E-value=72 Score=27.91 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=45.8
Q ss_pred EEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCch
Q 012929 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (453)
Q Consensus 63 i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (453)
++.++...+...++.+...|..... ++...+=++.|||-+=.-.+-..+++.++.++. ...++++|..++.-.
T Consensus 28 ii~l~g~I~~~~a~~i~~~L~~l~~---~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~-pV~~~v~g~AaS~g~ 100 (193)
T 1yg6_A 28 VIFLTGQVEDHMANLIVAQMLFLEA---ENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP-DVSTICMGQAASMGA 100 (193)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHH---HCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSS-CEEEEEEEEEETHHH
T ss_pred EEEEcCEEcHHHHHHHHHHHHHHHh---cCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCC-CEEEEEeeeHHHHHH
Confidence 4567889999999999999874321 122344467889977544444556666665542 234557777665433
No 90
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.62 E-value=1.9e+02 Score=22.23 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=52.1
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccc----cchHHHHHHHHHHHhh--CCCCEE-EE
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVK----SPSQSAMDTLIAKCKS--AKKPLV-VA 131 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~----~~a~~~~~~~i~~~~~--~~~~vV-vg 131 (453)
-+....+.+...|...||++... ...+|+++++...-. .. ...+.++++++ .+.+|| ++
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~---~g~~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 11 DNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGN---EGLFWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp SCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----C---CHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc---cHHHHHHHHHhhCcCCCEEEEE
Confidence 34556677778888888876422 234799999643210 11 12344454444 344554 55
Q ss_pred ccccCCch-hhhcCCcc-EEEcCCChhHHHHHHHHHhcCC
Q 012929 132 GCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (453)
Q Consensus 132 Gc~a~~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~~~~g~ 169 (453)
+....... .......+ .+.-+-....+...+.....+.
T Consensus 88 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 88 AYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 43221111 11233444 4666667778888888776653
No 91
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=29.56 E-value=3.5e+02 Score=25.18 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~ 299 (453)
..+++.+++-++.+.+.|+..|.+.| .. |.-.+....++++++.+.++ ...+.+..-+-..+... ......
T Consensus 155 ~~~~~~~~~~~~~~~~~G~d~i~l~D-T~---G~~~P~~~~~lv~~l~~~~~---~~~l~~H~Hn~~Gla~A--n~laAv 225 (302)
T 2ftp_A 155 DVDPRQVAWVARELQQMGCYEVSLGD-TI---GVGTAGATRRLIEAVASEVP---RERLAGHFHDTYGQALA--NIYASL 225 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEE-SS---SCCCHHHHHHHHHHHTTTSC---GGGEEEEEBCTTSCHHH--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC-CC---CCcCHHHHHHHHHHHHHhCC---CCeEEEEeCCCccHHHH--HHHHHH
Confidence 35889999999999999999999874 33 32233456778888876543 23455553222222221 122333
Q ss_pred hCCCCceeeecccC
Q 012929 300 RHPCVYSFLHVPVQ 313 (453)
Q Consensus 300 ~~~~~~~~l~iglE 313 (453)
. .++..++..+-
T Consensus 226 ~--aGa~~vd~tv~ 237 (302)
T 2ftp_A 226 L--EGIAVFDSSVA 237 (302)
T ss_dssp H--TTCCEEEEBGG
T ss_pred H--hCCCEEEeccc
Confidence 3 35567766554
No 92
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.41 E-value=1.8e+02 Score=21.93 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCCE-EEEccccCC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPL-VVAGCVPQG 137 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-~~~v-VvgGc~a~~ 137 (453)
+....+.+...|...||++... ...+|++++... .-. ....+.++++++. +.+| +++|.....
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~-~p~---~~g~~~~~~lr~~~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM-LPN---KDGVEVCREVRKKYDMPIIMLTAKDSEI 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT-STT---THHHHHHHHHHTTCCSCEEEEEESSCHH
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC-CCC---CCHHHHHHHHHhcCCCCEEEEECCCChH
Confidence 4455677778888888876432 346799999642 211 2245556666543 3444 455533221
Q ss_pred chh-hhcCCcc-EEEcCCChhHHHHHHHHHh
Q 012929 138 SRD-LKELEGV-SIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 138 ~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~ 166 (453)
... ......+ .+.-+-....+...+...+
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 111 1133444 4666666667776666543
No 93
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.99 E-value=1.4e+02 Score=25.20 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=43.7
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP 127 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~ 127 (453)
+|++. ||.....-.+.+...|...|+.... ...+-|++++=|-+ ..+ ..+.+.++.+|++|.+
T Consensus 51 ~I~i~--G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 51 KVVVM--GMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS--GES-SEITALIPVLKRLHVP 125 (183)
T ss_dssp CEEEE--ECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS--SCC-HHHHHHHHHHHTTTCC
T ss_pred eEEEE--eecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHCCCC
Confidence 77765 5555556678888888888865421 12345777664433 222 3467788889999987
Q ss_pred EE-EEcc
Q 012929 128 LV-VAGC 133 (453)
Q Consensus 128 vV-vgGc 133 (453)
+| +++-
T Consensus 126 vi~IT~~ 132 (183)
T 2xhz_A 126 LICITGR 132 (183)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 65 5553
No 94
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.71 E-value=1.9e+02 Score=21.82 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a~ 136 (453)
+....+.+...|...||++... ...+|+++++... -.. ...+.++++++ .+.+| ++++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~---~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKI-PGM---DGIEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC-TTC---CHHHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCC-CCC---CHHHHHHHHHHhCCCCCEEEEEccCch
Confidence 4555667777788788876422 1247999996432 111 12344454443 34444 45554321
Q ss_pred Cch-hhhcCCc-cEEEcCCChhHHHHHHHHHhcC
Q 012929 137 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 137 ~~~-e~~~~~~-d~vvG~~~~~~l~~~l~~~~~g 168 (453)
... +...... +.+.-+-....+...++....+
T Consensus 88 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 88 DMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 111 1112233 4566676767777777765543
No 95
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=28.65 E-value=4.1e+02 Score=27.24 Aligned_cols=124 Identities=12% Similarity=0.091 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
+++.+++-++.+.+.|+..|.|-| .. |.-.+..+.++++.+.+.++ ....+.+..-+-..+.- ........
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I~L~D-T~---G~~~P~~v~~lv~~l~~~~p--~~i~I~~H~Hnd~GlAv--AN~laAve- 243 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSIALKD-MA---ALLKPQPAYDIIKAIKDTYG--QKTQINLHCHSTTGVTE--VSLMKAIE- 243 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEE-TT---CCCCHHHHHHHHHHHHHHHC--TTCCEEEEEBCTTSCHH--HHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-CC---CCcCHHHHHHHHHHHHHhcC--CCceEEEEeCCCCChHH--HHHHHHHH-
Confidence 789999999999999999999876 33 32234567888888887663 23455665323222211 11222222
Q ss_pred CCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 302 ~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.++.+|+-.+- -|..+...-....++..++.. |+. +|-..+.+.++.+++.++
T Consensus 244 -AGa~~VD~ti~--------g~GertGN~~lE~lv~~L~~~--g~~---------tgidl~~L~~is~~v~~~ 296 (539)
T 1rqb_A 244 -AGVDVVDTAIS--------SMSLGPGHNPTESVAEMLEGT--GYT---------TNLDYDRLHKIRDHFKAI 296 (539)
T ss_dssp -TTCSEEEEBCG--------GGCSTTSBCBHHHHHHHTTTS--SEE---------CCCCHHHHHHHHHHHHHH
T ss_pred -hCCCEEEEecc--------ccCCCccChhHHHHHHHHHhc--CCC---------chhhHHHHHHHHHHHHHH
Confidence 45667766653 344443333344444444444 432 234666676666666655
No 96
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=28.52 E-value=3.5e+02 Score=24.89 Aligned_cols=131 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecc------------cCCCCHHHHHhhcCC
Q 012929 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP------------VQSGSDAVLSAMNRE 326 (453)
Q Consensus 259 l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~ig------------lESgs~~vLk~m~R~ 326 (453)
+.+.++++.+.-. ...--.+..-+|+ +....+.+..+.+ +++..+++| +|..+.+.|+. +
T Consensus 5 i~~~f~~~~~~~~--~ali~yi~aGdP~-~~~~~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~---G 76 (267)
T 3vnd_A 5 YQAKFAALKAQDK--GAFVPFVTIGDPS-PELSLKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAA---G 76 (267)
T ss_dssp HHHHHHHHHHHTC--CEEEEEEETTSSC-HHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHhcCC--CeEEEEEeCCCCC-HHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHc---C
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEE-----------------------EeCCCCCHHHHHHHHHHHHhcCCCeEEEEe
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDII-----------------------CGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~I-----------------------vG~PgET~ed~~~tl~~i~~l~~~~i~i~~ 383 (453)
.+.+++.+.++.+|+..+.+.+....- +=+|....|+..+..+.+++.+++.+.+.
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~li- 155 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIA- 155 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEE-
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEE-
Q ss_pred cccCCCCHhHHHHHHHHHHH
Q 012929 384 FYPRPGIQFLNLDSTELLSL 403 (453)
Q Consensus 384 ~sp~pGT~~~~~R~~~l~~~ 403 (453)
-|.|+. +|.+.+.+.
T Consensus 156 ---aP~t~~--eri~~i~~~ 170 (267)
T 3vnd_A 156 ---PPNADA--DTLKMVSEQ 170 (267)
T ss_dssp ---CTTCCH--HHHHHHHHH
T ss_pred ---CCCCCH--HHHHHHHHh
No 97
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=28.34 E-value=1.1e+02 Score=27.95 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEE------------eCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCC
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIIC------------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~Iv------------G~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT 390 (453)
.+.+....+.+++.+|+..+..-|.. +-| .+.++++-+.+-+.+.+-+.++.|.+|+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 25 RPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp THHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 34555566666666666666555553 333 3334555555666667777777766665
No 98
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=27.87 E-value=1.2e+02 Score=25.88 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=43.7
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHH------HcCCeeeCC---------------------------CCCCcEEEEeecc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLS------AFGYALTDN---------------------------SEEADIWLINTCT 105 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~------~~g~~~~~~---------------------------~~~AD~viinTCt 105 (453)
.+|++ +||.....-.+.+...|. ..|+..... ..+-|++++=|.+
T Consensus 42 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 119 (196)
T 2yva_A 42 NKILC--CGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTR 119 (196)
T ss_dssp CCEEE--EESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 45655 577777777788888887 566643211 1334777664433
Q ss_pred cccchHHHHHHHHHHHhhCCCCEE-EEcc
Q 012929 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (453)
Q Consensus 106 v~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (453)
= .+ ..+.+.++.+|++|.+|| +++.
T Consensus 120 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 G--NS-RDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 2 22 346778888999998765 6664
No 99
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.51 E-value=83 Score=27.14 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=44.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHH------HHcCCeeeC---------------------------CCCCCcEEEEeecc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQL------SAFGYALTD---------------------------NSEEADIWLINTCT 105 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L------~~~g~~~~~---------------------------~~~~AD~viinTCt 105 (453)
.+|++ +||.....-.+.+...| ...|..... ...+-|++++=|-+
T Consensus 46 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 123 (199)
T 1x92_A 46 GKILS--CGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTS 123 (199)
T ss_dssp CCEEE--ECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 46665 57777777888888888 445654431 12345777764433
Q ss_pred cccchHHHHHHHHHHHhhCCCCEE-EEcc
Q 012929 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (453)
Q Consensus 106 v~~~a~~~~~~~i~~~~~~~~~vV-vgGc 133 (453)
= .+ ..+.+.++.+|++|.+|| +++.
T Consensus 124 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 124 G--NS-ANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEECC
Confidence 2 22 346778889999998765 5653
No 100
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.96 E-value=97 Score=29.45 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CC--Cc---CCCHHHHHHHHHHhCCCCCC-ceEEEEecCCc-----
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--DI---GVNLPILLNAIVAELPPDGS-TMLRIGMTNPP----- 286 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y-g~--d~---~~~l~~Ll~~l~~~i~~~~~-~~ir~~~~~p~----- 286 (453)
+.++.+++.+.+..+.+.|++.|..+..|.... |. +. -.+-.+|++.+.+.. +. ..+... .+|.
T Consensus 81 ~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~---g~~f~igvA-~yPE~Hp~~ 156 (310)
T 3apt_A 81 AGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERY---GDRVSVGGA-AYPEGHPES 156 (310)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHH---GGGSEEEEE-ECTTCCTTS
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhC---CCCeEEEEE-eCCCcCCCC
Confidence 457889999999999999999987665565443 30 10 124567777766531 22 334443 4542
Q ss_pred -ChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeC
Q 012929 287 -FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356 (453)
Q Consensus 287 -~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~ 356 (453)
.+..+++.|.+-.+ .++.++. -| --|+.+.+.+.++.+++. |+. .-+|.|+
T Consensus 157 ~~~~~d~~~Lk~Kv~--aGAdf~i--TQ-----------~ffD~~~~~~f~~~~r~~--Gi~--vPIi~GI 208 (310)
T 3apt_A 157 ESLEADLRHFKAKVE--AGLDFAI--TQ-----------LFFNNAHYFGFLERARRA--GIG--IPILPGI 208 (310)
T ss_dssp SCHHHHHHHHHHHHH--HHCSEEE--EC-----------CCSCHHHHHHHHHHHHHT--TCC--SCEECEE
T ss_pred CCHHHHHHHHHHHHH--cCCCEEE--ec-----------ccCCHHHHHHHHHHHHHc--CCC--CeEEEEe
Confidence 12222222222111 2222211 11 135778888999999988 743 2344444
No 101
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=26.95 E-value=1.1e+02 Score=24.92 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=39.3
Q ss_pred CceEEEEeeCCCcCh-hHHHHHHHHHHHcCCeee---------CCCC-CCcEEEEeeccccc---chHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQ-SDSEYMAGQLSAFGYALT---------DNSE-EADIWLINTCTVKS---PSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~-~dse~~~~~L~~~g~~~~---------~~~~-~AD~viinTCtv~~---~a~~~~~~~i~~~~~ 123 (453)
|+|+.|+-.--.=|. .=.+.++..|.+.|+++. .+.. ++|.++|-|.+.-. .....+...++++..
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~ 80 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR 80 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc
Confidence 456655533222221 112334455556676542 1234 78999996666442 223456666766543
Q ss_pred ---CCCCEEEEcc
Q 012929 124 ---AKKPLVVAGC 133 (453)
Q Consensus 124 ---~~~~vVvgGc 133 (453)
.++++.+=|+
T Consensus 81 ~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 81 IGLAGRKVAAFAS 93 (148)
T ss_dssp TCCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 3566666666
No 102
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=26.73 E-value=4.1e+02 Score=25.08 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCCceEEE-EecCCcChhHHHHHHHHHHhC
Q 012929 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRI-GMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 224 e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~~~~~~~ir~-~~~~p~~i~~~l~~l~~l~~~ 301 (453)
+.+++..+.+++.|..-|.+-++.+.....+.. ....++++.+.+.+ ...+.+ .+-+|+.-.+- +.+.++.
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~----~vplsI~DT~~~~~~~~V---~eaal~a 146 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI----DVPLMIIGCGVEEKDAEI---FPVIGEA 146 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC----SSCEEEECCSCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC----CceEEEECCCCCCCCHHH---HHHHHHh
Confidence 788999999999999988876642211111110 12244666666543 245677 65233221222 2222222
Q ss_pred CC----CceeeecccCCCCHHHHHhhcC--------CC-CHHHHHHHHHHHHHhCCCc---EEEEEEEEeCCCCCHHHHH
Q 012929 302 PC----VYSFLHVPVQSGSDAVLSAMNR--------EY-TLSDFRTVVDTLIELVPGM---QIATDIICGFPGETDEDFN 365 (453)
Q Consensus 302 ~~----~~~~l~iglESgs~~vLk~m~R--------~~-t~e~~~~~i~~lr~~~pgi---~v~~~~IvG~PgET~ed~~ 365 (453)
.. +.+-++-. -.++++....+ .. +.+.+.+.++.+.++ |+ .+-.|-.+|+.|-+.+.-.
T Consensus 147 ga~~k~iINdvs~~---~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~--Gi~~e~IilDPg~g~~g~~~e~~~ 221 (310)
T 2h9a_B 147 LSGRNCLLSSATKD---NYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEM--NLAPNRIIMDPLIGALGYGIEYSY 221 (310)
T ss_dssp TTTSCCEEEEECTT---THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT--TCCGGGEEEECCCCCTTTTHHHHH
T ss_pred CCCCCCEEEECCCC---ccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHC--CCChhhEEEeCCCccccCchHhHH
Confidence 11 33444432 23455543221 11 467788888888888 77 5788888886675555444
Q ss_pred HHHHHHHh
Q 012929 366 QTVNLIKE 373 (453)
Q Consensus 366 ~tl~~i~~ 373 (453)
++++.++.
T Consensus 222 ~~l~~ir~ 229 (310)
T 2h9a_B 222 SIIERMRL 229 (310)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666665
No 103
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=26.54 E-value=4.2e+02 Score=25.13 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=76.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC----c---C---CCHHHHHHHHHHhCCCCCCceEEEEecCCcCh
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----I---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d----~---~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i 288 (453)
+..+++.+++.++.+++.|..-|-+-++-+.. |.+ . . .++..+++.+.+.. ...+.+.+.+|..+
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISIDT~~~~Va 118 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNP-FVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVDTSRPRVM 118 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCT-TC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEECSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEeCCCHHHH
Confidence 66789999999999999999988776543322 222 0 0 12445556665432 24677776665422
Q ss_pred hHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh----------c-CC--CC-------------HHHHHHHHHHHHHh
Q 012929 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM----------N-RE--YT-------------LSDFRTVVDTLIEL 342 (453)
Q Consensus 289 ~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m----------~-R~--~t-------------~e~~~~~i~~lr~~ 342 (453)
..- +. .-..+.+-++-+ + .++++... . ++ .+ .+.+.+.++.+.++
T Consensus 119 ~aA---l~---aGa~iINDVsg~-~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~ 189 (314)
T 3tr9_A 119 REA---VN---TGADMINDQRAL-Q--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKA 189 (314)
T ss_dssp HHH---HH---HTCCEEEETTTT-C--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---HH---cCCCEEEECCCC-C--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHc
Confidence 211 11 112233333321 1 33444322 1 11 11 45677788888888
Q ss_pred CCCcE---EEEEEEEe---CCCCCHHHHHHHHHHH
Q 012929 343 VPGMQ---IATDIICG---FPGETDEDFNQTVNLI 371 (453)
Q Consensus 343 ~pgi~---v~~~~IvG---~PgET~ed~~~tl~~i 371 (453)
|+. +..|=-+| | +.|.++-.++++-+
T Consensus 190 --GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l 221 (314)
T 3tr9_A 190 --GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKL 221 (314)
T ss_dssp --TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTT
T ss_pred --CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHH
Confidence 874 77777778 7 67776544444433
No 104
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=25.30 E-value=5.3e+02 Score=25.85 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
+++.+++-++.+.+.|+..|.|.| .. |.-.+..+.++++.+.+.+. ..+.+..-+-..+. +........
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~D-T~---G~~~P~~v~~lv~~l~~~~~----~~i~~H~Hnd~GlA--vAN~laAv~- 224 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKD-MA---GILTPYAAEELVSTLKKQVD----VELHLHCHSTAGLA--DMTLLKAIE- 224 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEE-TT---SCCCHHHHHHHHHHHHHHCC----SCEEEEECCTTSCH--HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcC-CC---CCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCChH--HHHHHHHHH-
Confidence 889999999999999999999976 22 33234567888888887652 34555532222221 111222223
Q ss_pred CCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 302 ~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
.++.+++-.+- -|..+...-....++..++.. |+. +|-..+.+.++-+++.++
T Consensus 225 -AGa~~VD~ti~--------g~gertGN~~lE~lv~~L~~~--g~~---------tgidl~~L~~is~~v~~~ 277 (464)
T 2nx9_A 225 -AGVDRVDTAIS--------SMSGTYGHPATESLVATLQGT--GYD---------TGLDIAKLEQIAAYFRDV 277 (464)
T ss_dssp -TTCSEEEEBCG--------GGCSTTSCCBHHHHHHHHTTS--TTC---------CCCCHHHHHHHHHHHHHH
T ss_pred -hCCCEEEEecc--------ccCCCCcCHHHHHHHHHHHhc--CCC---------cccCHHHHHHHHHHHHHH
Confidence 45667766554 344333323333444444433 432 233555565555555544
No 105
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=25.27 E-value=2.5e+02 Score=22.16 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=51.5
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCEE-EEcccc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCVP 135 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc~a 135 (453)
-+....+.+...|...||++... ...+|+++++...-... ..+.++.+++ .+.+|| +++..
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~----g~~~~~~l~~~~~~~pii~ls~~~- 85 (155)
T 1qkk_A 11 DDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMD----GLALFRKILALDPDLPMILVTGHG- 85 (155)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSC----HHHHHHHHHHHCTTSCEEEEECGG-
T ss_pred CCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC----HHHHHHHHHhhCCCCCEEEEECCC-
Confidence 35566778888999999987432 34579999975332211 2344444443 345555 44432
Q ss_pred CCchh--hhcCCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 136 QGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 136 ~~~~e--~~~~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
..... ......+ .+.-+-....+...+.....
T Consensus 86 ~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 86 DIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp GHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 21111 1133444 46666666777777766544
No 106
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.24 E-value=2.3e+02 Score=21.71 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=50.4
Q ss_pred cChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEEcccc
Q 012929 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVP 135 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a 135 (453)
-+....+.+...|...||++... ....|+++++...-... ..+.++++++ .+.+| ++++...
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (132)
T 3crn_A 11 DDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDME----GTELLEKAHKLRPGMKKIMVTGYAS 86 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSB----HHHHHHHHHHHCTTSEEEEEESCCC
T ss_pred CCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCc----hHHHHHHHHhhCCCCcEEEEecccc
Confidence 34556677888888888876422 23579999964321111 2344444443 33444 4555432
Q ss_pred CCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 136 QGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 136 ~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
..... ......+ .+.-+-....+...++....
T Consensus 87 ~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 87 LENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 11111 1133344 46667676777777766544
No 107
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=25.03 E-value=62 Score=28.36 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=41.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeee--CCC---CCCcEEEEeecccccch--HHHH--HHHHHHHhhCCCCEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNS---EEADIWLINTCTVKSPS--QSAM--DTLIAKCKSAKKPLV 129 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~--~~~---~~AD~viinTCtv~~~a--~~~~--~~~i~~~~~~~~~vV 129 (453)
+||.|+-+|++ |. ..+...|+..|++++ .++ .++|.+|+- +.-.+. .... ..+++.+++.+++|
T Consensus 3 ~~I~iiD~g~~-n~---~si~~al~~~G~~~~v~~~~~~l~~~D~lilP--G~g~~~~~~~~~~~~~~i~~~~~~~~Pv- 75 (211)
T 4gud_A 3 QNVVIIDTGCA-NI---SSVKFAIERLGYAVTISRDPQVVLAADKLFLP--GVGTASEAMKNLTERDLIELVKRVEKPL- 75 (211)
T ss_dssp CCEEEECCCCT-TH---HHHHHHHHHTTCCEEEECCHHHHHHCSEEEEC--CCSCHHHHHHHHHHTTCHHHHHHCCSCE-
T ss_pred CEEEEEECCCC-hH---HHHHHHHHHCCCEEEEECCHHHHhCCCEEEEC--CCCCHHHHHHHHHhcChHHHHHHcCCCE-
Confidence 57999999995 53 347788999998753 333 358989883 332221 1111 12345566666654
Q ss_pred EEcccc
Q 012929 130 VAGCVP 135 (453)
Q Consensus 130 vgGc~a 135 (453)
+|=|..
T Consensus 76 lGIClG 81 (211)
T 4gud_A 76 LGICLG 81 (211)
T ss_dssp EEETHH
T ss_pred EEEchh
Confidence 455653
No 108
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=24.84 E-value=2.2e+02 Score=22.47 Aligned_cols=78 Identities=8% Similarity=0.062 Sum_probs=55.3
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhhCCCCEEEEcccc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVP 135 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~---~a~~~~~~~i~~~~~~~~~vVvgGc~a 135 (453)
..+.++.+.-++...-++.+...|.+.-- ..+.....++|+-..|+. .+...+..+.+++++.|..+++.|+-+
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~---~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 90 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVD---QDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQ 90 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTT---SSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSS
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHh---cCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35778888889999999999999976310 111145678887555543 345667777888999999999999876
Q ss_pred CCch
Q 012929 136 QGSR 139 (453)
Q Consensus 136 ~~~~ 139 (453)
+...
T Consensus 91 ~v~~ 94 (130)
T 2kln_A 91 DLRE 94 (130)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 109
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=24.36 E-value=5.1e+02 Score=25.34 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCCc--EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 227 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 227 v~Ei~~l~~~G~~--eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
..|+..+.+.|+. .|.|.+. +.. .+-++...+. +...+.+. . .++++.+.+++...
T Consensus 92 ~~E~~~~~~~G~~~~~Ii~~g~-----~k~-----~~ei~~a~~~----gv~~~~vd---s---~~el~~l~~~~~~~-- 149 (424)
T 7odc_A 92 KTEIQLVQGLGVPAERVIYANP-----CKQ-----VSQIKYAASN----GVQMMTFD---S---EIELMKVARAHPKA-- 149 (424)
T ss_dssp HHHHHHHHHTTCCGGGEEECCS-----SCC-----HHHHHHHHHT----TCCEEEEC---S---HHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHcCCChhhEEECCC-----CCC-----HHHHHHHHHC----CCCEEEeC---C---HHHHHHHHHhCCCC--
Confidence 4688888888875 5766542 111 3334444442 43323332 1 12333344433221
Q ss_pred ceeeecccCCCC-HHHHHhhcC-CCCHHHHHHHHHHHHHhCCCcEEE-EEEEEeCCCCCHHHHHHHHH
Q 012929 305 YSFLHVPVQSGS-DAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTVN 369 (453)
Q Consensus 305 ~~~l~iglESgs-~~vLk~m~R-~~t~e~~~~~i~~lr~~~pgi~v~-~~~IvG~PgET~ed~~~tl~ 369 (453)
.+++-+.++. ...-..|+| |.+.++..++++.+++. ++.+. ..+=+|---.+.+.+.+.++
T Consensus 150 --~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~~~~~~~~--~l~l~Glh~H~gsq~~d~~~~~~a~~ 213 (424)
T 7odc_A 150 --KLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKEL--NIDVIGVSFHVGSGCTDPDTFVQAVS 213 (424)
T ss_dssp --EEEEEBCC-----------CCCBCHHHHHHHHHHHHHT--TCEEEEEECCCCSSCCCTHHHHHHHH
T ss_pred --eEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEECCCCCCCHHHHHHHHH
Confidence 3444444432 112234677 67899999999999886 87643 23334543234555554443
No 110
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=24.32 E-value=4.2e+02 Score=24.38 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=46.2
Q ss_pred EEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 193 ~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
.++|..+-||++. -..+++.+++-++.+.+.|+..|.+.| .. |.-.+....++++.+.+.++
T Consensus 137 ~~~l~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~G~d~i~l~D-t~---G~~~P~~~~~lv~~l~~~~~- 198 (295)
T 1ydn_A 137 RGYVSCVVECPYD-------------GPVTPQAVASVTEQLFSLGCHEVSLGD-TI---GRGTPDTVAAMLDAVLAIAP- 198 (295)
T ss_dssp EEEEECSSEETTT-------------EECCHHHHHHHHHHHHHHTCSEEEEEE-TT---SCCCHHHHHHHHHHHHTTSC-
T ss_pred EEEEEEEecCCcC-------------CCCCHHHHHHHHHHHHhcCCCEEEecC-CC---CCcCHHHHHHHHHHHHHhCC-
Confidence 3456666666652 134789999999999999999999875 22 33334466788888877543
Q ss_pred CCCceEEEEe
Q 012929 273 DGSTMLRIGM 282 (453)
Q Consensus 273 ~~~~~ir~~~ 282 (453)
...+.+..
T Consensus 199 --~~~l~~H~ 206 (295)
T 1ydn_A 199 --AHSLAGHY 206 (295)
T ss_dssp --GGGEEEEE
T ss_pred --CCeEEEEE
Confidence 23455553
No 111
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=24.12 E-value=2.8e+02 Score=27.09 Aligned_cols=45 Identities=7% Similarity=-0.168 Sum_probs=28.7
Q ss_pred hcC-CCCHHHHHHHHHHHHHhCCCcEEE-EEEEEeCCCCCHHHHHHHH
Q 012929 323 MNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFPGETDEDFNQTV 368 (453)
Q Consensus 323 m~R-~~t~e~~~~~i~~lr~~~pgi~v~-~~~IvG~PgET~ed~~~tl 368 (453)
|+| +.+.++..++++.+++. |++.+. ..+.+|--..+.+.+.+.+
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~-~~l~l~Gl~~H~gs~~~~~~~~~~~~ 220 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKS-AFLEPVSVHFHIGSQLLDLEPIIEAS 220 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHC-SSEEEEEEECCCBSSBCCHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhC-CCccEEEEEEECCCCCCCHHHHHHHH
Confidence 677 67889999999988774 777643 3444564333455444443
No 112
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.91 E-value=17 Score=25.80 Aligned_cols=17 Identities=41% Similarity=0.952 Sum_probs=14.5
Q ss_pred EeCCCCCCCcccccccc
Q 012929 197 PINVGCLGACTYCKTKH 213 (453)
Q Consensus 197 ~isrGC~~~CsFC~~~~ 213 (453)
+..+||-+.|.||....
T Consensus 19 KFADG~Gh~C~yCk~r~ 35 (62)
T 2a20_A 19 KFADGCGHNCSYCQTKF 35 (62)
T ss_dssp CCCSSCCEEBTTTCCEE
T ss_pred eeccCCCccccccCCee
Confidence 46899999999998763
No 113
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.87 E-value=2e+02 Score=23.84 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCee--eCCC-----------CCCcEEEEeecccccchHHHHHHHHHHHh---hCCCCEEEEccccC
Q 012929 76 EYMAGQLSAFGYAL--TDNS-----------EEADIWLINTCTVKSPSQSAMDTLIAKCK---SAKKPLVVAGCVPQ 136 (453)
Q Consensus 76 e~~~~~L~~~g~~~--~~~~-----------~~AD~viinTCtv~~~a~~~~~~~i~~~~---~~~~~vVvgGc~a~ 136 (453)
+.|+..|.+.|.++ .+.. .++|.++|-|.+.-... .. ...+..+. -.|+++++=|++.+
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~-p~-~~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQPSE-AV-ATALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSSCCH-HH-HHHHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcCCch-hH-HHHHHHHHhhhhCCCEEEEEEcCCC
Confidence 34566667778753 2221 14899999766653322 21 33444443 25677777777655
No 114
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=23.66 E-value=3.9e+02 Score=25.29 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC------cCCCHHHHHHHHHHhCCCCCCceEEEEecCC
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD------IGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d------~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p 285 (453)
++.+++.+++.++.+++.|..-|-+-++-+. -|.. ...++..+++.|.+.. ...+.+.+.+|
T Consensus 28 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTr-PGa~~v~~~eE~~Rv~pvI~~l~~~~----~vpiSIDT~~~ 95 (314)
T 2vef_A 28 QFFALEQALQQARKLIAEGASMLDIGGESTR-PGSSYVEIEEEIQRVVPVIKAIRKES----DVLISIDTWKS 95 (314)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHC----CCEEEEECSCH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHHhhC----CceEEEeCCCH
Confidence 4567899999999999999998887664332 1221 0124555666665542 24566665444
No 115
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.45 E-value=1.4e+02 Score=27.20 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEE----EEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 326 EYTLSDFRTVVDTLIELVPGMQIAT----DIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~pgi~v~~----~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
..+.+|+.++++.++..-+|+.+.. .+|--.|+|-..|....++++...
T Consensus 114 ~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLela~~~ 166 (234)
T 3cuq_A 114 DVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKN 166 (234)
T ss_dssp SCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhc
Confidence 3589999999999999877777643 688889999999999999998643
No 116
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=23.09 E-value=4e+02 Score=23.88 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=44.4
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHH-H-hhCCCCEEEEcccc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK-C-KSAKKPLVVAGCVP 135 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~-~-~~~~~~vVvgGc~a 135 (453)
.+||.+.|- .-..=++.+...|++.|++++.... .++. -|.| +-....+.+.+.+++ + ..+|.-.|+-||--
T Consensus 117 ~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~adaivL~CT~ 190 (240)
T 3ixl_A 117 VRRVALATA---YIDDVNERLAAFLAEESLVPTGCRS-LGIT-GVEA-MARVDTATLVDLCVRAFEAAPDSDGILLSSGG 190 (240)
T ss_dssp CSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEE-CCCC-CHHH-HHTCCHHHHHHHHHHHHHTSTTCSEEEEECTT
T ss_pred CCEEEEEeC---ChHHHHHHHHHHHHHCCCEEecccc-CCCC-Ccch-hhcCCHHHHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 479999884 3333368889999999998754211 1110 0011 111234567888888 7 67788888888953
No 117
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=23.06 E-value=1.9e+02 Score=27.73 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-C----CCC---cCCCHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA-Y----GRD---IGVNLPILL 263 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~-y----g~d---~~~~l~~Ll 263 (453)
.+-.|-+..|=.-. -.++.+-|-+ ..+++.+++|++.+++.|++.|.|.+.-... . |.. ...-+..-+
T Consensus 41 LI~PlFV~eg~~~~---~~I~SMPGv~-r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rai 116 (342)
T 1h7n_A 41 LIFPLFISDNPDDF---TEIDSLPNIN-RIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGI 116 (342)
T ss_dssp EEEEEEEESSTTCE---EECTTSTTCE-EECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---eeCCCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHH
Confidence 33344455553322 1234444544 4589999999999999999999998752210 1 111 012356778
Q ss_pred HHHHHhCC
Q 012929 264 NAIVAELP 271 (453)
Q Consensus 264 ~~l~~~i~ 271 (453)
+.|.+.+|
T Consensus 117 r~iK~~~p 124 (342)
T 1h7n_A 117 KFIREYFP 124 (342)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 88887776
No 118
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.02 E-value=2.5e+02 Score=21.22 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEE-EEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vV-vgGc~a~ 136 (453)
+....+.+...|...||++... ...+|+++++.. .-.. ...+.++++++. +.+|| +++....
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~~---~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (126)
T 1dbw_A 12 EEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR-MPDM---SGVELLRNLGDLKINIPSIVITGHGDV 87 (126)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC-STTS---CHHHHHHHHHHTTCCCCEEEEECTTCH
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC-CCCC---CHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 4445667777888888876421 235799998642 2211 124445555543 34554 5554321
Q ss_pred Cch-hhhcCCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 137 GSR-DLKELEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 137 ~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
... .......+ .+.-+-....+.+.++....
T Consensus 88 ~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 88 PMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 111 11133344 46677677777777776554
No 119
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=22.92 E-value=1.1e+02 Score=24.73 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCeee---------CCCCC-CcEEEEeeccccc-c--hHHHHHHHHHHHhh---CCCCEEEEcccc
Q 012929 77 YMAGQLSAFGYALT---------DNSEE-ADIWLINTCTVKS-P--SQSAMDTLIAKCKS---AKKPLVVAGCVP 135 (453)
Q Consensus 77 ~~~~~L~~~g~~~~---------~~~~~-AD~viinTCtv~~-~--a~~~~~~~i~~~~~---~~~~vVvgGc~a 135 (453)
.++..|.+.|+++. .+..+ +|.++|-|.+.-. . ....+...++++.. .++++.+-|+..
T Consensus 20 ~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~g~ 94 (147)
T 1f4p_A 20 TIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGD 94 (147)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEEEC
T ss_pred HHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEeecC
Confidence 34445555677541 12346 9999996655422 2 12245566666543 356666666643
No 120
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=22.70 E-value=4e+02 Score=23.50 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCC
Q 012929 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (453)
Q Consensus 225 ~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~ 304 (453)
+.++.++.+.+.|+..+.+.+.|-...+. ..+ ++++++.+.. +..-+.-+.++. . +.+..++. .+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~---~ipv~v~ggI~~----~--~~~~~~l~--~G 97 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAM---DIKVELSGGIRD----D--DTLAAALA--TG 97 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHC---SSEEEEESSCCS----H--HHHHHHHH--TT
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhc---CCcEEEECCcCC----H--HHHHHHHH--cC
Confidence 55566677778999999988644322221 345 8888887753 222222222221 1 12333444 34
Q ss_pred ceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEE------EeCCCCCHHHHHHHHHHHHhcCCCe
Q 012929 305 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII------CGFPGETDEDFNQTVNLIKEYKFPQ 378 (453)
Q Consensus 305 ~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~I------vG~PgET~ed~~~tl~~i~~l~~~~ 378 (453)
+..+++|.++..+ .+.+.+.++.+. . .+.+..+.- -|....+. +..+.++.+.+++++.
T Consensus 98 ad~V~lg~~~l~~-----------p~~~~~~~~~~g-~--~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 98 CTRVNLGTAALET-----------PEWVAKVIAEHG-D--KIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCAR 162 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHG-G--GEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCC
T ss_pred CCEEEECchHhhC-----------HHHHHHHHHHcC-C--cEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCE
Confidence 6788887664321 223333333332 1 244445543 12211222 3344456667788888
Q ss_pred EEEEeccc
Q 012929 379 VHISQFYP 386 (453)
Q Consensus 379 i~i~~~sp 386 (453)
+.++...+
T Consensus 163 i~~~~~~~ 170 (244)
T 1vzw_A 163 YVVTDIAK 170 (244)
T ss_dssp EEEEEC--
T ss_pred EEEeccCc
Confidence 87776554
No 121
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=22.66 E-value=47 Score=35.07 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCC
Q 012929 82 LSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (453)
Q Consensus 82 L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (453)
+++.|..+|+-.-..=+++| .|+= ..+.+..+++.+.++|.-|++.||.+..
T Consensus 141 iR~~GvplV~G~IPGvavIv-G~a~---d~e~aa~I~~e~q~r~~lvfl~G~~a~q 192 (729)
T 1oao_C 141 VRRFGIKMVDWTIPGEAIIL-GRAK---DSKALAKIVKELMGMGFMLFICDEAVEQ 192 (729)
T ss_dssp HHHTHHHHTTTSSCCEEEEE-ECCS---CHHHHHHHHHHHHHTTCEEEEETHHHHH
T ss_pred HHhcCCceecCCCCeEEEEE-eCCC---CHHHHHHHHHHHHHCCcEEEEechHHHH
Confidence 55666666654333334444 6653 2456788888888888888888998743
No 122
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.34 E-value=2.4e+02 Score=20.81 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCE-EEEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~v-VvgGc~a~ 136 (453)
+....+.+...|...||++... ...+|+++++...-... ..+.++++++ .+.+| ++++....
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGIS----GLEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSC----HHHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC----HHHHHHHHHccCCCCeEEEEECCcch
Confidence 4555677778888888876422 23579999964322111 2334444443 33454 45654321
Q ss_pred CchhhhcCCcc-EEEcCCChhHHHHHHHH
Q 012929 137 GSRDLKELEGV-SIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 137 ~~~e~~~~~~d-~vvG~~~~~~l~~~l~~ 164 (453)
. ........+ .+.-+-....+...++.
T Consensus 86 ~-~~~~~~g~~~~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 86 R-SDMSSWAADEYVVKSFNFDELKEKVKK 113 (116)
T ss_dssp G-GCGGGGGSSEEEECCSSTHHHHHHHHH
T ss_pred H-HHHHhccccceEECCCCHHHHHHHHHH
Confidence 1 112223334 45555555666666554
No 123
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=22.31 E-value=3.4e+02 Score=24.90 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=45.2
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEc-cccC
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG-CVPQ 136 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgG-c~a~ 136 (453)
.+||.+.| +.-..-++.+...|++.|++++.... .++. -+.| +.....+.+.+.++++...|.-.|+-| |.--
T Consensus 146 ~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~-~~~~-~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l 219 (273)
T 2xed_A 146 AQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRA-LEVA-DNTE-VGCIPGEQVMAAARSLDLSEVDALVISCAVQM 219 (273)
T ss_dssp CCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEE-CCCC-BHHH-HHTCCHHHHHHHHHHSCCTTCSEEEEESSSSS
T ss_pred CCeEEEEc---CChhhhHHHHHHHHHHCCCEEecccc-CCCc-cchh-hcccCHHHHHHHHHHHhhCCCCEEEEcCCCCc
Confidence 46999997 55555567889999999988643211 1110 0112 111123457777888877788888888 9644
No 124
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=22.10 E-value=4.2e+02 Score=23.57 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=32.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (453)
|..++++.++-++.+.+.|++-|.+..-+ ..-.++++++.+.++
T Consensus 33 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~ 76 (225)
T 1mxs_A 33 TIAREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRP 76 (225)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCc
Confidence 55678888999999999999988886311 123567887777664
No 125
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=22.04 E-value=1.5e+02 Score=29.19 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCeee-----CC-----------CCCCcEEEEeecccccchHHHHHHHH---HHHhhCCCCEEEEcccc
Q 012929 75 SEYMAGQLSAFGYALT-----DN-----------SEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAKKPLVVAGCVP 135 (453)
Q Consensus 75 se~~~~~L~~~g~~~~-----~~-----------~~~AD~viinTCtv~~~a~~~~~~~i---~~~~~~~~~vVvgGc~a 135 (453)
.+.++..|.+.|.+.+ +. ..+||.++|-|+|.-......+...+ ...+-+|+++.+=|++.
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGSyG 362 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHG 362 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEECCC
Confidence 4677888888997653 11 23689999999997654333343333 33344567777778887
Q ss_pred CC
Q 012929 136 QG 137 (453)
Q Consensus 136 ~~ 137 (453)
+.
T Consensus 363 Ws 364 (410)
T 4dik_A 363 WA 364 (410)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 126
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.91 E-value=2.1e+02 Score=22.10 Aligned_cols=102 Identities=9% Similarity=0.086 Sum_probs=56.0
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh----
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS---- 123 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~---- 123 (453)
++|.|+ .-|....+.+...|.+.||++... ....|+|+++.- .-.. ...+.++++++
T Consensus 7 ~~iLiv----dd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~---~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 7 PRILIC----EDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN-LPDQ---DGVSLIRALRRDSRT 78 (140)
T ss_dssp SEEEEE----CSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC-CSSS---CHHHHHHHHHTSGGG
T ss_pred CCEEEE----cCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCC---CHHHHHHHHHhCccc
Confidence 455554 346667788888898899886432 245799999642 2221 23455566654
Q ss_pred CCCCEEE-EccccCCchhhh--cCCccE-EEcCCChhHHHHHHHHHhcC
Q 012929 124 AKKPLVV-AGCVPQGSRDLK--ELEGVS-IVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 124 ~~~~vVv-gGc~a~~~~e~~--~~~~d~-vvG~~~~~~l~~~l~~~~~g 168 (453)
.+.+||+ ++.......... ....+. +.-+-....+...+...+.+
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 2445554 432211111102 223444 55666667787777766544
No 127
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=21.71 E-value=2.6e+02 Score=21.77 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=52.0
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc--c-hHHHHHHHHHHHhhCCCCEEEEccccC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--P-SQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~--~-a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (453)
.+.+..+.=++...-++.+...+.+.- .++..++|+-..|.. . +...+.++.+++++ |..+++.|+.++
T Consensus 17 ~v~v~~l~G~L~f~~a~~l~~~l~~~~-------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~ 88 (118)
T 3ny7_A 17 DVLVLRVIGPLFFAAAEGLFTDLESRL-------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQ 88 (118)
T ss_dssp TEEEEEEESCBCHHHHHHHHHHHHTTC-------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHH
T ss_pred CEEEEEEeceeEehhHHHHHHHHHHhc-------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHH
Confidence 577777888999999999999887531 245778887655553 2 34455666778888 999999998765
Q ss_pred Cch
Q 012929 137 GSR 139 (453)
Q Consensus 137 ~~~ 139 (453)
...
T Consensus 89 v~~ 91 (118)
T 3ny7_A 89 PLR 91 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 128
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=21.69 E-value=2.2e+02 Score=25.74 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEE---------EEecCCcChhHHHHHHH
Q 012929 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR---------IGMTNPPFILEHLKEIA 296 (453)
Q Consensus 226 Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir---------~~~~~p~~i~~~l~~l~ 296 (453)
+.+-++.+.+.|+..|.+...++..+... .+.++-+.+.+. +..-.. +...++......++.+.
T Consensus 19 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~---~~~~~~~~l~~~----gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~ 91 (294)
T 3vni_A 19 YKYYIEKVAKLGFDILEIAASPLPFYSDI---QINELKACAHGN----GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYT 91 (294)
T ss_dssp HHHHHHHHHHHTCSEEEEESTTGGGCCHH---HHHHHHHHHHHT----TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEecCcccCCcCHH---HHHHHHHHHHHc----CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHH
Q ss_pred HHHhCCC--CceeeecccCCCC----------HHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHH
Q 012929 297 EVLRHPC--VYSFLHVPVQSGS----------DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 364 (453)
Q Consensus 297 ~l~~~~~--~~~~l~iglESgs----------~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~ 364 (453)
...+... +++++.+.+-++. ++.++.+ .+.+.++.+.+++. |+.+..--+-++|+.-..+.
T Consensus 92 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~--Gv~l~lEn~~~~~~~~~~~~ 164 (294)
T 3vni_A 92 DLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERS-----VESVREVAKVAEAC--GVDFCLEVLNRFENYLINTA 164 (294)
T ss_dssp HHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHH-----HHHHHHHHHHHHHT--TCEEEEECCCTTTCSSCCSH
T ss_pred HHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHH-----HHHHHHHHHHHHHc--CCEEEEEecCcccCcccCCH
Q ss_pred HHHHHHHHhcCCCeEEEE
Q 012929 365 NQTVNLIKEYKFPQVHIS 382 (453)
Q Consensus 365 ~~tl~~i~~l~~~~i~i~ 382 (453)
.+..+++++++.+.+.+.
T Consensus 165 ~~~~~l~~~v~~~~vg~~ 182 (294)
T 3vni_A 165 QEGVDFVKQVDHNNVKVM 182 (294)
T ss_dssp HHHHHHHHHHCCTTEEEE
T ss_pred HHHHHHHHHcCCCCEEEE
No 129
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=21.69 E-value=1.6e+02 Score=25.05 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHH
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKC 121 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~ 121 (453)
.+||.|+|-|-+.....-..+...++++
T Consensus 67 ~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 67 ADYDAIIFGTPTRFGNMSGQMRTFLDQT 94 (198)
T ss_dssp GGCSEEEEEEEEETTEECHHHHHHHTTC
T ss_pred HHCCEEEEEeChhcCCchHHHHHHHHHh
Confidence 3678888866555443333455555543
No 130
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=21.58 E-value=1.3e+02 Score=24.16 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=53.1
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc--c-hHHHHHHHHHHHhhCCCCEEEEccccC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--P-SQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~--~-a~~~~~~~i~~~~~~~~~vVvgGc~a~ 136 (453)
.+.+..+.-++...-++.+...|.... ..+..++|+--.|.. . +...+..+.+++++.|..+++.|+.++
T Consensus 23 ~i~v~~l~G~L~f~~a~~~~~~l~~~~-------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 95 (135)
T 4dgf_A 23 GVEIYEINGPFFFGVADRLKGVLDVIE-------ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDR 95 (135)
T ss_dssp TEEEEECCSSBSHHHHHHHTTGGGGCS-------SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHH
T ss_pred CEEEEEeeceEEehhHHHHHHHHHHhc-------CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 678889999999999999988886431 356788887655553 2 344455666778888999999998755
Q ss_pred Cc
Q 012929 137 GS 138 (453)
Q Consensus 137 ~~ 138 (453)
..
T Consensus 96 v~ 97 (135)
T 4dgf_A 96 LY 97 (135)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=21.50 E-value=2.8e+02 Score=24.27 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=44.0
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCCEEEEcccc
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVP 135 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~vVvgGc~a 135 (453)
.+||.+.| +.-..-++.+...|++.|++++.. ...++. -+.| +.....+.+.+.++++... |.-.|+-||.-
T Consensus 108 ~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~ 181 (223)
T 2dgd_A 108 VRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGY-DGLGKI-RGID-ISNTPIFTIYRLVKRHLNEVLKADAVYIACTA 181 (223)
T ss_dssp CCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEE-EECCCC-SHHH-HHTCCHHHHHHHHHTTHHHHTTSSEEEECCTT
T ss_pred CCeEEEEe---CCchHHHHHHHHHHHhCCcEEecc-cCCCCC-Ccch-hhccCHHHHHHHHHHHhcccCCCCEEEEeCCc
Confidence 46899986 444444668888999999876432 111110 0111 1111234567777777667 88888889964
Q ss_pred CC
Q 012929 136 QG 137 (453)
Q Consensus 136 ~~ 137 (453)
-.
T Consensus 182 l~ 183 (223)
T 2dgd_A 182 LS 183 (223)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 132
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=21.44 E-value=4.1e+02 Score=25.11 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=36.3
Q ss_pred ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhC
Q 012929 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAEL 270 (453)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i 270 (453)
+.--.++++|+++.....+.|..-+.+.--|.- -|... ...+.++++.|.+..
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~-dG~ps~d~~~~~e~~~~IR~~~ 79 (311)
T 3e49_A 25 PYLPVTPDEVAQASIGAAEAGAAVIHLHARDPR-DGRPTQDPAAFAEFLPRIKSNT 79 (311)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTT-TCCEECCHHHHTTHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCC-CCCcCCCHHHHHHHHHHHHHhC
Confidence 355678999999999999999988888765521 12211 124667777776653
No 133
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=21.35 E-value=1.4e+02 Score=26.38 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=45.4
Q ss_pred EEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCch
Q 012929 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (453)
Q Consensus 62 ~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~ 139 (453)
.++.++-..+...++.+...|....- ++..++=++.|||-+=.-.+-..+++.++.++. ...++++|..++.-.
T Consensus 28 rii~l~G~I~~~~a~~i~~~L~~~~~---~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~-pV~~~v~g~AaS~g~ 101 (208)
T 2cby_A 28 RIIFLGSEVNDEIANRLCAQILLLAA---EDASKDISLYINSPGGSISAGMAIYDTMVLAPC-DIATYAMGMAASMGE 101 (208)
T ss_dssp TEEEECSCBCHHHHHHHHHHHHHHHH---HCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSS-CEEEEEEEEEETHHH
T ss_pred cEEEEcCEECHHHHHHHHHHHHHHHh---CCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCC-CEEEEECcEeHHHHH
Confidence 35678889999999999999964321 122334467889987544444456666665532 233556776665443
No 134
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=20.93 E-value=5e+02 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~ 281 (453)
.+++.+++-++.+.+.|+..|.|.| .. |.-.+..+.++++.+.+.++ ...+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T~---G~~~P~~~~~lv~~l~~~~~---~~~i~~H 206 (298)
T 2cw6_A 153 ISPAKVAEVTKKFYSMGCYEISLGD-TI---GVGTPGIMKDMLSAVMQEVP---LAALAVH 206 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEE-TT---SCCCHHHHHHHHHHHHHHSC---GGGEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecC-CC---CCcCHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 4889999999999999999999876 33 33334567889999987763 2345665
No 135
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.86 E-value=2.6e+02 Score=20.72 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHcCCeee---CC---------CCCCcEEEEeecccccchHHHHHHHHHHHhh--CCCCEE-EEcccc
Q 012929 71 NQSDSEYMAGQLSAFGYALT---DN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV-VAGCVP 135 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~---~~---------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~~~~vV-vgGc~a 135 (453)
+....+.+...|...||+++ .+ ...+|+++++... -.. ...+.++++++ .+.+|| +++...
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~---~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM-PEM---NGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC-GGG---CHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCC---cHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 45566778888888899843 22 1247999996432 211 12344555544 344554 555432
Q ss_pred CCch-hhhcCCcc-EEEcCCChhHHHHHHHH
Q 012929 136 QGSR-DLKELEGV-SIVGVQQIDRVVEVVEE 164 (453)
Q Consensus 136 ~~~~-e~~~~~~d-~vvG~~~~~~l~~~l~~ 164 (453)
.... .......+ .+.-+-....+.+.++.
T Consensus 87 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~ 117 (120)
T 1tmy_A 87 QAMVIEAIKAGAKDFIVKPFQPSRVVEALNK 117 (120)
T ss_dssp HHHHHHHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcceeEeCCCCHHHHHHHHHH
Confidence 1111 11133344 46666666666666654
No 136
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.85 E-value=82 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=15.6
Q ss_pred CceEEEEeeCCCcChhHHHHHHH----HHHHcCCee
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAG----QLSAFGYAL 89 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~----~L~~~g~~~ 89 (453)
|+|+.|+..- + ..-++.|+. .|.+.|+++
T Consensus 5 M~kilii~~S-~--~g~T~~la~~i~~~l~~~g~~v 37 (200)
T 2a5l_A 5 SPYILVLYYS-R--HGATAEMARQIARGVEQGGFEA 37 (200)
T ss_dssp CCEEEEEECC-S--SSHHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEEEeC-C--CChHHHHHHHHHHHHhhCCCEE
Confidence 5677776543 2 233555444 445567654
No 137
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.78 E-value=3.2e+02 Score=23.34 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=41.8
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeeccccc------------chHHHHHHHHHHHhhCCCC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS------------PSQSAMDTLIAKCKSAKKP 127 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~------------~a~~~~~~~i~~~~~~~~~ 127 (453)
++.+...|+.=... ..+...|... ......+|+|+|.- +.-. ...+.+.++++++++.+++
T Consensus 43 ~~~v~n~g~~G~~~--~~~~~~~~~~----~~~~~~pd~vvi~~-G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 115 (240)
T 3mil_A 43 KMDILQRGFKGYTS--RWALKILPEI----LKHESNIVMATIFL-GANDACSAGPQSVPLPEFIDNIRQMVSLMKSYHIR 115 (240)
T ss_dssp TEEEEEEECTTCCH--HHHHHHHHHH----HHHCCCEEEEEEEC-CTTTTSSSSTTCCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceEEEecCcCcccH--HHHHHHHHHH----hcccCCCCEEEEEe-ecCcCCccCCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 57788888865544 3344444421 11114689999943 2111 1234466678888888999
Q ss_pred EEEEccccC
Q 012929 128 LVVAGCVPQ 136 (453)
Q Consensus 128 vVvgGc~a~ 136 (453)
||+.++.+.
T Consensus 116 vil~~~~p~ 124 (240)
T 3mil_A 116 PIIIGPGLV 124 (240)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 998886543
No 138
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=20.68 E-value=5.9e+02 Score=24.70 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCC----------CC----CCcCCCHHHHHHHHHHhCCCCCCceEEEEecCC
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA----------YG----RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~----------yg----~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p 285 (453)
..+.+..++++++|.+.|..-|.+.-.+... +. .|.-.+...++..+ +. +...+|+ ||
T Consensus 42 T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~-e~----G~dklRI---NP 113 (366)
T 3noy_A 42 THDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSM-EK----GVHGIRI---NP 113 (366)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHH-HT----TCSEEEE---CH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHH-Hh----CCCeEEE---CC
Confidence 4789999999999999999888776432100 00 00001222233333 21 3344554 56
Q ss_pred cChh--HHHHHHHHHHhCCCCceeeecccCCC--CHHHHHhhcCCC---CHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC
Q 012929 286 PFIL--EHLKEIAEVLRHPCVYSFLHVPVQSG--SDAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (453)
Q Consensus 286 ~~i~--~~l~~l~~l~~~~~~~~~l~iglESg--s~~vLk~m~R~~---t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg 358 (453)
.++- +..+++.+.++..+. -+-||+-+| ++++|.++.... -++...+.++.+.+. |+ .+|++-+..
T Consensus 114 GNig~~~~~~~vv~~ak~~~~--piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~--gf---~~iviS~K~ 186 (366)
T 3noy_A 114 GNIGKEEIVREIVEEAKRRGV--AVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKW--GF---TNYKVSIKG 186 (366)
T ss_dssp HHHSCHHHHHHHHHHHHHHTC--EEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TC---CCEEEEEEC
T ss_pred cccCchhHHHHHHHHHHHcCC--CEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhC--CC---CeEEEeeec
Confidence 5552 233344444443333 455666665 588888887543 245566667777777 66 577777777
Q ss_pred CCHHHHHHHHHHHHh
Q 012929 359 ETDEDFNQTVNLIKE 373 (453)
Q Consensus 359 ET~ed~~~tl~~i~~ 373 (453)
-+..+..+..+.+.+
T Consensus 187 S~v~~~i~ayr~la~ 201 (366)
T 3noy_A 187 SDVLQNVRANLIFAE 201 (366)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 776666666665544
No 139
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.63 E-value=2.4e+02 Score=22.25 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=56.7
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-- 124 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-- 124 (453)
+.+|.|+. -+....+.+...|.+.||++... ....|+|+++...-... ..+.++++++.
T Consensus 14 ~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~----g~~~~~~l~~~~~ 85 (153)
T 3hv2_A 14 RPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMD----GPTLLARIHQQYP 85 (153)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC----HHHHHHHHHHHCT
T ss_pred CceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCc----HHHHHHHHHhHCC
Confidence 56777763 45666778888888889987532 24579999975332211 24444555443
Q ss_pred CCCEEEEccccCCchh--hhcCC-cc-EEEcCCChhHHHHHHHHHhc
Q 012929 125 KKPLVVAGCVPQGSRD--LKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 125 ~~~vVvgGc~a~~~~e--~~~~~-~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
+.+||+-.-....... ..... .+ .+.-+-....+...+...+.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4455543222221111 11333 44 45566666777777766544
No 140
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=20.52 E-value=1.8e+02 Score=27.69 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 012929 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382 (453)
Q Consensus 326 ~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~ 382 (453)
..|.+++...++.+.+..+++.+..|+=.|| | +.+...+++..+.+.+..-+++=
T Consensus 82 ~vt~~em~~~~~~I~r~~~~~PviaD~d~Gy-g-~~~~v~~tv~~l~~aGaagv~iE 136 (318)
T 1zlp_A 82 LLTTTEVVEATRRITAAAPNLCVVVDGDTGG-G-GPLNVQRFIRELISAGAKGVFLE 136 (318)
T ss_dssp CSCHHHHHHHHHHHHHHSSSSEEEEECTTCS-S-SHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHhhccCCCEEEeCCCCC-C-CHHHHHHHHHHHHHcCCcEEEEC
Confidence 3689999999999999988899999999997 6 88889999988888998888874
No 141
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.27 E-value=3.2e+02 Score=21.49 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=54.9
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--C
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~ 125 (453)
.+|.|+. -+....+.+...|...||++... ...+|+|+++...-... ..+.++.+++. .
T Consensus 8 ~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~----g~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 8 YTVMLVD----DEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMG----GEVFLEQVAKSYPD 79 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSC----HHHHHHHHHHHCTT
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCC----HHHHHHHHHHhCCC
Confidence 4555543 45667788888898889987532 34579999975332212 23444555443 3
Q ss_pred CCEE-EEccccCCch-hhhcCC-cc-EEEcCCChhHHHHHHHHHhc
Q 012929 126 KPLV-VAGCVPQGSR-DLKELE-GV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 126 ~~vV-vgGc~a~~~~-e~~~~~-~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
.+|| +++....... ...... .+ .+.-+-....+...+.....
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 80 IERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 4554 4443221111 111233 44 46666666777777766544
No 142
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=20.27 E-value=2.2e+02 Score=27.32 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=46.9
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-----CCC---cCCCHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD---IGVNLPILL 263 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~y-----g~d---~~~~l~~Ll 263 (453)
.+..|-+..|=.-. -.++.+-|-+ ..+++.+++|++.+++.|++.|.|.+.- ... |.. ...-+..-+
T Consensus 38 LI~PlFV~eg~~~~---~~I~SMPGv~-r~sid~l~~~~~~~~~lGi~~v~LFgv~-~~~~KD~~gs~A~~~~g~v~rai 112 (337)
T 1w5q_A 38 LILPVFVLDGVNQR---ESIPSMPGVE-RLSIDQLLIEAEEWVALGIPALALFPVT-PVEKKSLDAAEAYNPEGIAQRAT 112 (337)
T ss_dssp EEEEEEEESSSSCE---EECTTSTTCE-EEEHHHHHHHHHHHHHTTCCEEEEEECC-CGGGCBSSCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---cccCCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEecCC-CcccCCcccCccCCCCChHHHHH
Confidence 34445555554322 2344444544 4589999999999999999999998851 111 111 012356778
Q ss_pred HHHHHhCC
Q 012929 264 NAIVAELP 271 (453)
Q Consensus 264 ~~l~~~i~ 271 (453)
+.|.+.+|
T Consensus 113 r~iK~~~p 120 (337)
T 1w5q_A 113 RALRERFP 120 (337)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 88888776
No 143
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=20.14 E-value=79 Score=28.86 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHhCCCcEEEE----EEEEeCCCCCHHHHHHHHHHHHhc
Q 012929 317 DAVLSAMNR--EYTLSDFRTVVDTLIELVPGMQIAT----DIICGFPGETDEDFNQTVNLIKEY 374 (453)
Q Consensus 317 ~~vLk~m~R--~~t~e~~~~~i~~lr~~~pgi~v~~----~~IvG~PgET~ed~~~tl~~i~~l 374 (453)
+++...++| ..|.+|+.++++.++.. .|+.+.. .+|--.|+|-..|....++++...
T Consensus 117 ~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~g~~~vqsvp~el~~D~~~vLe~a~~~ 179 (233)
T 1u5t_A 117 QELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSIL 179 (233)
T ss_dssp HHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEETTEEEECCSSSCCCTTHHHHHHTTTTT
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhc
Confidence 467788888 67999999999999997 7876543 688888999999999999988654
No 144
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.14 E-value=2.2e+02 Score=25.06 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=45.4
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhh--C
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--A 124 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~--~ 124 (453)
.+|+| +||.....-...++..|...|+..... ..+-|++++=|-+ ..+ ..+.+.++.+|+ +
T Consensus 60 ~~I~i--~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~S--G~t-~~~i~~~~~ak~~~~ 134 (220)
T 3etn_A 60 GKLVT--SGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNS--GKT-REIVELTQLAHNLNP 134 (220)
T ss_dssp CCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHCT
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCC--CCC-HHHHHHHHHHHhcCC
Confidence 45665 567666777888888898888754321 2344777663433 233 357788889999 9
Q ss_pred CCCEE-EEcc
Q 012929 125 KKPLV-VAGC 133 (453)
Q Consensus 125 ~~~vV-vgGc 133 (453)
|.+|| +++.
T Consensus 135 Ga~vI~IT~~ 144 (220)
T 3etn_A 135 GLKFIVITGN 144 (220)
T ss_dssp TCEEEEEESC
T ss_pred CCeEEEEECC
Confidence 98766 5553
No 145
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.13 E-value=2.8e+02 Score=22.92 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCee--eCCCC------------CCcEEEEeecccccchHHHHHHHHHHHh---hCCCCEEEEccccC
Q 012929 76 EYMAGQLSAFGYAL--TDNSE------------EADIWLINTCTVKSPSQSAMDTLIAKCK---SAKKPLVVAGCVPQ 136 (453)
Q Consensus 76 e~~~~~L~~~g~~~--~~~~~------------~AD~viinTCtv~~~a~~~~~~~i~~~~---~~~~~vVvgGc~a~ 136 (453)
+.|+..|.+.|.++ .+... ++|.++|-|.+.-.. .. +...+..+. -.|+++.+=|++.+
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~-~p-~~~~l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASA-AS-IQGALSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSH-HH-HHHHHHHHHHHCCTTSEEEEECCSSS
T ss_pred HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCC-cc-HHHHHHHHHhhcccCCEEEEEEcCCC
Confidence 34666677778753 22221 379999966554322 22 233444432 25667777777654
No 146
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.04 E-value=1.2e+02 Score=27.41 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=53.4
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (453)
.||++++|+=..+ +.+.+...| |+ |+... ++.+ ++.+...++++++.|..+||||-.+...
T Consensus 107 ~kIavVg~~~~~~--~~~~i~~ll---~~---------~i~~~---~~~~--~ee~~~~i~~l~~~G~~vVVG~~~~~~~ 167 (225)
T 2pju_A 107 SSIGVVTYQETIP--ALVAFQKTF---NL---------RLDQR---SYIT--EEDARGQINELKANGTEAVVGAGLITDL 167 (225)
T ss_dssp SCEEEEEESSCCH--HHHHHHHHH---TC---------CEEEE---EESS--HHHHHHHHHHHHHTTCCEEEESHHHHHH
T ss_pred CcEEEEeCchhhh--HHHHHHHHh---CC---------ceEEE---EeCC--HHHHHHHHHHHHHCCCCEEECCHHHHHH
Confidence 5899999965544 334455554 22 33333 2333 3567888999999999999999776443
Q ss_pred hhhhcCCccEEEcCCChhHHHHHHHHHh
Q 012929 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 139 ~e~~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
.+ ++.-..++-.. ...+...++++.
T Consensus 168 A~--~~Gl~~vlI~s-~eSI~~Ai~eA~ 192 (225)
T 2pju_A 168 AE--EAGMTGIFIYS-AATVRQAFSDAL 192 (225)
T ss_dssp HH--HTTSEEEESSC-HHHHHHHHHHHH
T ss_pred HH--HcCCcEEEECC-HHHHHHHHHHHH
Confidence 32 33223444443 467888877654
Done!