Query 012929
Match_columns 453
No_of_seqs 441 out of 2296
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 18:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012929.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012929hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olta_ c.1.28.2 (A:) Oxygen-i 99.9 2E-22 1.4E-26 206.1 16.5 182 202-393 59-248 (441)
2 d1r30a_ c.1.28.1 (A:) Biotin s 99.8 3.4E-19 2.5E-23 173.6 20.5 180 197-393 45-230 (312)
3 d1tv8a_ c.1.28.3 (A:) Molybden 98.7 4.8E-07 3.5E-11 86.2 20.4 175 194-386 14-196 (327)
4 d7reqa2 c.23.6.1 (A:561-728) M 97.3 0.00044 3.2E-08 59.2 9.9 95 58-154 37-149 (168)
5 d7reqb2 c.23.6.1 (B:476-638) M 96.4 0.0022 1.6E-07 54.4 6.0 104 58-165 35-155 (163)
6 d1xrsb1 c.23.6.1 (B:102-261) D 95.8 0.018 1.3E-06 48.3 8.9 93 59-154 20-142 (160)
7 d1ccwa_ c.23.6.1 (A:) Glutamat 95.7 0.02 1.5E-06 46.7 8.6 103 59-164 4-132 (137)
8 d3bula2 c.23.6.1 (A:741-896) M 94.7 0.045 3.3E-06 45.6 7.9 106 60-168 8-133 (156)
9 d1x5wa2 g.37.1.1 (A:36-64) Zin 81.1 0.14 1E-05 28.9 -0.1 10 203-212 2-11 (29)
10 d1eiwa_ c.23.3.1 (A:) Hypothet 78.7 11 0.00082 28.3 10.9 98 64-166 9-108 (111)
11 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 62.0 5.9 0.00043 28.7 5.2 55 66-129 29-88 (89)
12 d1vmea1 c.23.5.1 (A:251-398) R 61.9 8 0.00059 30.2 6.6 62 76-137 22-102 (148)
13 d2h1qa1 c.67.3.1 (A:1-251) Hyp 61.5 2.2 0.00016 37.6 3.1 65 94-162 166-232 (251)
14 d2fug61 e.19.1.2 (6:15-175) NA 60.5 1.9 0.00013 35.3 2.1 72 60-136 21-100 (161)
15 d1tzza1 c.1.11.2 (A:1146-1392) 55.4 44 0.0032 28.1 11.0 142 220-377 18-173 (247)
16 d2nv0a1 c.23.16.1 (A:1-195) Hy 55.3 7 0.00051 32.4 5.2 71 58-135 1-81 (195)
17 d1i60a_ c.1.15.4 (A:) Hypothet 54.1 3.3 0.00024 36.2 2.9 50 329-381 122-171 (278)
18 d1q7ra_ c.23.16.1 (A:) Hypothe 53.2 13 0.00097 30.7 6.8 71 58-135 6-86 (202)
19 d1jeoa_ c.80.1.3 (A:) Probable 48.5 28 0.002 28.0 7.9 68 59-131 38-113 (177)
20 d1jpma1 c.1.11.2 (A:126-359) L 48.1 40 0.0029 28.1 9.3 94 221-324 14-109 (234)
21 d2fi0a1 a.248.1.1 (A:3-81) Hyp 47.8 2.3 0.00016 30.5 0.5 32 61-92 47-78 (79)
22 d2flia1 c.1.2.2 (A:3-219) D-ri 47.5 73 0.0053 26.4 12.3 146 219-404 9-162 (217)
23 d2f62a1 c.23.14.1 (A:9-160) Nu 47.1 21 0.0016 28.3 6.8 34 58-91 1-37 (152)
24 d2naca2 c.23.12.1 (A:1-147,A:3 44.4 6.9 0.0005 32.5 3.2 36 65-103 49-97 (186)
25 d1b5ta_ c.1.23.1 (A:) Methylen 42.6 98 0.0071 26.5 13.9 118 219-358 72-193 (275)
26 d2a9va1 c.23.16.1 (A:1-196) GM 42.6 29 0.0021 28.2 7.2 73 58-135 1-82 (196)
27 d2a9pa1 c.23.1.1 (A:2-118) DNA 42.5 50 0.0036 24.2 8.1 90 72-165 10-114 (117)
28 d1mb3a_ c.23.1.1 (A:) Cell div 41.7 58 0.0042 23.9 8.4 93 71-167 10-120 (123)
29 d1xhfa1 c.23.1.1 (A:2-122) Aer 41.1 39 0.0029 25.0 7.3 91 71-165 11-116 (121)
30 d1rvka1 c.1.11.2 (A:127-381) H 40.6 60 0.0044 27.2 9.4 101 219-325 20-122 (255)
31 d1h1ya_ c.1.2.2 (A:) D-ribulos 40.5 91 0.0066 25.8 10.4 135 219-390 9-146 (220)
32 d1bboa2 g.37.1.1 (A:29-57) Enh 40.0 2.6 0.00019 23.5 -0.2 11 203-213 1-11 (29)
33 d1vima_ c.80.1.3 (A:) Hypothet 38.6 28 0.0021 28.3 6.5 70 59-133 41-118 (192)
34 d1f07a_ c.1.16.3 (A:) Coenzyme 38.5 1.1E+02 0.0081 26.0 13.4 109 221-343 11-125 (321)
35 d2nlya1 c.6.2.7 (A:31-254) Hyp 37.2 91 0.0066 26.0 9.8 97 277-376 27-127 (224)
36 d1e5da1 c.23.5.1 (A:251-402) R 37.0 21 0.0015 27.7 5.1 61 76-136 21-97 (152)
37 d1m3sa_ c.80.1.3 (A:) Hypothet 36.5 41 0.003 27.0 7.2 67 59-130 38-111 (186)
38 d1luca_ c.1.16.1 (A:) Bacteria 36.2 58 0.0042 28.5 8.9 109 223-343 21-139 (355)
39 d1zl0a2 c.23.16.7 (A:3-169) LD 35.5 92 0.0067 24.7 9.1 108 52-163 7-123 (167)
40 d1ekqa_ c.72.1.2 (A:) Hydroxye 32.9 45 0.0033 28.9 7.1 75 59-138 18-103 (269)
41 d1rd5a_ c.1.2.4 (A:) Trp synth 32.8 35 0.0025 29.5 6.3 58 332-393 4-64 (261)
42 d1dbwa_ c.23.1.1 (A:) Transcri 32.1 88 0.0064 22.9 8.9 88 75-166 16-119 (123)
43 d1ys7a2 c.23.1.1 (A:7-127) Tra 31.8 89 0.0065 22.8 10.0 92 71-166 10-117 (121)
44 d1sjda1 c.1.11.2 (A:126-367) N 31.6 1.3E+02 0.0094 24.6 10.1 135 221-377 15-161 (242)
45 d1v8aa_ c.72.1.2 (A:) Hydroxye 31.3 39 0.0029 29.2 6.4 68 70-137 22-100 (264)
46 d1jpdx1 c.1.11.2 (X:114-321) L 30.0 99 0.0072 25.0 8.7 91 222-326 16-106 (208)
47 d1klra_ g.37.1.1 (A:) ZFY {Hum 30.0 9.6 0.0007 21.1 1.1 11 203-213 2-12 (30)
48 d1ks9a2 c.2.1.6 (A:1-167) Keto 29.6 46 0.0033 25.5 6.1 27 59-90 1-27 (167)
49 d1rqba2 c.1.10.5 (A:4-306) Tra 29.6 94 0.0068 26.5 9.0 126 222-376 159-284 (303)
50 d1kgsa2 c.23.1.1 (A:2-123) Pho 29.2 98 0.0072 22.5 8.6 89 73-165 12-116 (122)
51 d1ezwa_ c.1.16.3 (A:) Coenzyme 29.1 1.7E+02 0.012 25.1 11.3 104 222-342 14-140 (347)
52 d1yioa2 c.23.1.1 (A:3-130) Res 29.1 1E+02 0.0073 22.6 10.3 92 71-166 11-118 (128)
53 d1t0ba_ c.23.16.6 (A:) GK2113 29.0 40 0.0029 28.4 6.0 58 77-137 31-102 (240)
54 d1a1ia3 g.37.1.1 (A:160-187) Z 29.0 2.3 0.00017 23.7 -1.6 14 203-216 3-16 (28)
55 d1s8na_ c.23.1.1 (A:) Probable 27.6 82 0.006 24.9 7.6 91 72-167 13-120 (190)
56 d1w25a1 c.23.1.1 (A:2-140) Res 27.0 1.1E+02 0.0082 22.8 8.0 90 72-165 11-118 (139)
57 d1qgoa_ c.92.1.2 (A:) Cobalt c 26.4 1E+02 0.0075 25.7 8.4 56 330-392 152-207 (257)
58 d1h7na_ c.1.10.3 (A:) 5-aminol 25.9 75 0.0055 28.4 7.4 76 192-271 41-124 (340)
59 d1lucb_ c.1.16.1 (B:) Bacteria 25.8 1.9E+02 0.014 24.6 11.9 109 222-342 20-138 (320)
60 d1wu7a1 c.51.1.1 (A:330-426) H 25.7 1E+02 0.0074 21.5 7.1 30 59-89 4-33 (97)
61 d2d59a1 c.2.1.8 (A:4-142) Hypo 25.5 1.2E+02 0.009 22.9 7.9 88 59-154 20-129 (139)
62 d1ny5a1 c.23.1.1 (A:1-137) Tra 25.0 1.3E+02 0.0092 22.4 8.0 91 72-166 10-116 (137)
63 d2gl5a1 c.1.11.2 (A:123-400) P 24.9 1.9E+02 0.014 24.4 12.3 101 220-325 24-142 (278)
64 d1f6ya_ c.1.21.2 (A:) Methylte 24.5 1.8E+02 0.013 24.4 9.7 61 218-285 19-79 (262)
65 d1zh2a1 c.23.1.1 (A:2-120) Tra 24.1 1.2E+02 0.0088 21.8 7.7 90 73-166 11-115 (119)
66 d1p3da1 c.5.1.1 (A:11-106) UDP 23.8 68 0.005 22.8 5.6 30 94-129 66-95 (96)
67 d1mvoa_ c.23.1.1 (A:) PhoP rec 23.7 1.2E+02 0.009 21.8 9.8 92 71-166 11-118 (121)
68 d1yeya1 c.1.11.2 (A:184-435) R 23.4 89 0.0065 26.1 7.3 91 219-321 12-103 (252)
69 d3bofa1 c.1.21.2 (A:301-560) C 23.2 2.1E+02 0.015 24.2 10.0 62 218-286 34-95 (260)
70 d1jvna1 c.1.2.1 (A:230-552) Cy 22.9 69 0.005 28.4 6.5 162 220-391 44-248 (323)
71 d1nvma2 c.1.10.5 (A:2-290) 4-h 22.8 1.4E+02 0.01 25.0 8.8 81 222-312 146-226 (289)
72 d2pjua1 c.92.3.1 (A:11-196) Pr 22.8 41 0.003 27.5 4.5 86 59-166 95-180 (186)
73 d1gtea2 c.1.4.1 (A:533-844) Di 22.8 1.2E+02 0.0087 26.1 8.3 58 327-387 84-141 (312)
74 d5nula_ c.23.5.1 (A:) Flavodox 22.7 60 0.0044 24.2 5.4 62 76-137 17-91 (138)
75 d2f1ka2 c.2.1.6 (A:1-165) Prep 22.7 61 0.0045 25.0 5.6 16 224-239 145-161 (165)
76 d3c7bb3 d.134.1.1 (B:123-196,B 22.5 12 0.00091 30.5 1.1 16 196-212 51-66 (179)
77 d1vm6a3 c.2.1.3 (A:1-96,A:183- 22.4 53 0.0038 24.8 4.9 49 77-131 15-71 (128)
78 d1fjna_ g.3.7.3 (A:) Defensin 22.1 14 0.001 21.8 0.9 10 66-76 2-11 (39)
79 d1zgza1 c.23.1.1 (A:2-121) Tor 21.3 1.2E+02 0.0088 21.8 6.9 88 74-165 13-115 (120)
80 d1qopa_ c.1.2.4 (A:) Trp synth 21.2 80 0.0058 27.1 6.5 58 332-393 4-64 (267)
81 d1wufa1 c.1.11.2 (A:1127-1370) 21.2 2E+02 0.015 23.3 10.1 135 220-377 14-160 (244)
82 d1a3xa2 c.1.12.1 (A:1-87,A:189 21.1 2.1E+02 0.015 24.3 9.2 44 336-380 67-110 (265)
83 d1y81a1 c.2.1.8 (A:6-121) Hypo 20.9 1.5E+02 0.011 21.6 7.9 51 75-131 17-86 (116)
84 d3ceda1 d.58.18.13 (A:247-341) 20.7 65 0.0047 22.9 4.8 29 348-376 59-87 (95)
No 1
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=2e-22 Score=206.07 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=145.3
Q ss_pred CCCCccccccccccCc---cccCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 012929 202 CLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (453)
Q Consensus 202 C~~~CsFC~~~~~rg~---~rsr~~e~Iv~Ei~~l~~~----G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (453)
|++.|+||..+...++ ...+-++.+++||+...+. .+..|.|.|.+.+.... ..+.+|++.+.+.+....
T Consensus 59 C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~---~~l~~ll~~l~~~~~~~~ 135 (441)
T d1olta_ 59 CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLMKLLRENFQFNA 135 (441)
T ss_dssp ESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHHHHHHHHSCEEE
T ss_pred CCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCCH---HHHHHHHHHHhhhccccc
Confidence 9999999987643221 2223468889999876543 46678887766554432 356788888876653112
Q ss_pred CceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcE-EEEEEE
Q 012929 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDII 353 (453)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~-v~~~~I 353 (453)
...+.+. ++|..++++. +..+.+ .+++++++|+||+++++|+.|+|.++.+++.++++.+++. |+. ++.|+|
T Consensus 136 ~~e~t~E-~~P~~~~~~~--l~~l~~--~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~--g~~~vn~DLI 208 (441)
T d1olta_ 136 DAEISIE-VDPREIELDV--LDHLRA--EGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLI 208 (441)
T ss_dssp EEEEEEE-ECSSSCCTHH--HHHHHH--TTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT--TCCSCEEEEE
T ss_pred hhccccc-ccccccchHH--HHHHHH--hCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhc--ccceeecccc
Confidence 2345555 7899888765 555554 5689999999999999999999999999999999999999 975 999999
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHhH
Q 012929 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 354 vG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~~ 393 (453)
+|+||||.++|.+|++.+.+++++++.+|.|+..|+|..+
T Consensus 209 ~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~ 248 (441)
T d1olta_ 209 YGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAA 248 (441)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGG
T ss_pred cccCCcchHHHHHHHHHHHhhCCCccccccceeccchhHh
Confidence 9999999999999999999999999999999999999776
No 2
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}
Probab=99.81 E-value=3.4e-19 Score=173.58 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=138.7
Q ss_pred EeCCCCCCCccccccccccC----ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 012929 197 PINVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (453)
Q Consensus 197 ~isrGC~~~CsFC~~~~~rg----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (453)
..|+||+++|+||.++.... +.+..++++|+++++.+.+.|++++.+.++....+... ...+.++++.+...
T Consensus 45 ~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~--- 120 (312)
T d1r30a_ 45 IKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVKAM--- 120 (312)
T ss_dssp EECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTT-HHHHHHHHHHHHHT---
T ss_pred eeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHHHHHHHcCCEEEEEccCCCCCchhh-HHHHHHHHHhcccc---
Confidence 44999999999999765332 24567999999999999999999999988654433211 12334444444331
Q ss_pred CCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Q 012929 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~ 352 (453)
..++... ...++++. +..+.+ .+|..+.+|+|| +++.+..+.++.+.+++.++++.++++ |+.+.+++
T Consensus 121 --~~~~~~~---~~~l~~e~--l~~lk~--aG~~~i~~~iEs-~~~~~~~~~~~~~~~~~~~~~~~a~~~--Gi~~~~~~ 188 (312)
T d1r30a_ 121 --GLEACMT---LGTLSESQ--AQRLAN--AGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGG 188 (312)
T ss_dssp --TSEEEEE---CSSCCHHH--HHHHHH--HCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--HCEEECCE
T ss_pred --cceeeec---cccchHHH--HHHhhc--ccceeEecccch-hhhhhccCCCCCCHHHHHHHHHHHHHh--ccceecce
Confidence 2344433 33344433 555544 467899999999 566889999999999999999999999 99999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEecccCCCCHhH
Q 012929 353 ICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGIQFL 393 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~--~~~i~i~~~sp~pGT~~~ 393 (453)
|+|+ |||.+|..+++.++++++ .+.+.++.+.|+||||+.
T Consensus 189 i~G~-~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~ 230 (312)
T d1r30a_ 189 IVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLA 230 (312)
T ss_dssp EECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTS
T ss_pred EecC-cCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccc
Confidence 9999 799999999999999885 457889999999999999
No 3
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=98.71 E-value=4.8e-07 Score=86.19 Aligned_cols=175 Identities=15% Similarity=0.281 Sum_probs=123.2
Q ss_pred EEEEeCCCCCCCccccccccccC-------ccccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 012929 194 EILPINVGCLGACTYCKTKHARG-------HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (453)
Q Consensus 194 ~~i~isrGC~~~CsFC~~~~~rg-------~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (453)
..|+++.-|+.+|+||......+ +....+.|++.+-++.+.+.|+..+.|+|.....+ .++.+++...
T Consensus 14 l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~l~-----~~~~e~i~~~ 88 (327)
T d1tv8a_ 14 LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIAKL 88 (327)
T ss_dssp EEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHHHH
T ss_pred EEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCccccc-----ccHHHHHHHH
Confidence 45899999999999997543222 12346889998888888899999999988554433 4566666655
Q ss_pred HHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCC
Q 012929 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPG 345 (453)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m-~R~~t~e~~~~~i~~lr~~~pg 345 (453)
... +... ....++-..+++.. +..+... +...+.+.+++.+++..+.+ +++.+.+...+.++.+.++ |
T Consensus 89 ~~~----~~~~-~~~~Tng~ll~~~~--~~~l~~~--g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~--g 157 (327)
T d1tv8a_ 89 NQI----DGIE-DIGLTTNGLLLKKH--GQKLYDA--GLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI--G 157 (327)
T ss_dssp TTC----TTCC-EEEEEECSTTHHHH--HHHHHHH--TCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT--T
T ss_pred hhh----cccc-ccccccccccchhH--HHHHHHc--CCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHc--C
Confidence 432 2222 22224444455543 4455542 34689999999999888665 4567899999999999999 8
Q ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEeccc
Q 012929 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386 (453)
Q Consensus 346 i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp 386 (453)
+.+...+.+ .++.+..++.+.++++....++. .++.+.+
T Consensus 158 ~~~~~~~~v-~~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~ 196 (327)
T d1tv8a_ 158 LNVKVNVVI-QKGINDDQIIPMLEYFKDKHIEI-RFIEFMD 196 (327)
T ss_dssp CEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCCE-EEEECCC
T ss_pred CCcceeEEE-ecCccccccHHHHHHHHhhcccc-ceeeeec
Confidence 887777665 46788889999999999998764 3444443
No 4
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=97.35 E-value=0.00044 Score=59.21 Aligned_cols=95 Identities=13% Similarity=0.222 Sum_probs=71.2
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
..||.+-|+|...-..--..++..|+..||+++.. .++||+|.|+| ........+.++++++++
T Consensus 37 ~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs--~~~~~~~~~~~l~~~L~~ 114 (168)
T d7reqa2 37 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS--LAGGHLTLVPALRKELDK 114 (168)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEE--CSSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEec--CcccchHHHHHHHHHHHh
Confidence 46999999999888888889999999999999875 46799999954 333344567777777777
Q ss_pred CC---CCEEEEccccCCchh-hhcCCccEEEcCCC
Q 012929 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 124 ~~---~~vVvgGc~a~~~~e-~~~~~~d~vvG~~~ 154 (453)
.| .+|++||-.+..+-+ +.+...+.|+|++.
T Consensus 115 ~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt 149 (168)
T d7reqa2 115 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 149 (168)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTC
T ss_pred cCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCC
Confidence 65 468899966554432 44555667998875
No 5
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=96.37 E-value=0.0022 Score=54.40 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=71.7
Q ss_pred CceEEEEeeCCCc-ChhHHHHHHHHHHHcCCeeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 58 TETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 58 ~~~~~i~t~GC~~-N~~dse~~~~~L~~~g~~~~~~-------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
.++|++.++|=.. -..=+...++.|...||++++. ..+||+++| |+--......+-++++.+|.
T Consensus 35 rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~~~e~v~aa~~~~a~vvvi--cssd~~y~~~~~~~~~aLk~ 112 (163)
T d7reqb2 35 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 112 (163)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCChhhhhhHHHHHHHHHHccCeeeccCCCCCcHHHHHHHHhCCCCEEEE--ecCccchHHHHHHHHHHHHh
Confidence 5799999999764 4445566888899999998764 367899999 66554445566778888888
Q ss_pred CCC--CEEEEccccCCchh-hhcCCccEEEcCCChhHHHHHHHHH
Q 012929 124 AKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 124 ~~~--~vVvgGc~a~~~~e-~~~~~~d~vvG~~~~~~l~~~l~~~ 165 (453)
.|. +|++||..+....+ +.....|.+++.+. .+.+.+++.
T Consensus 113 ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~--d~~~~l~~l 155 (163)
T d7reqb2 113 AGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGM--DVVDTLSST 155 (163)
T ss_dssp TTCSEEEEESCGGGGGGGHHHHHHHCCEEECTTC--CHHHHHHHH
T ss_pred cccceeEEEecCCCcccHHHHHhCCCCeEecCCC--cHHHHHHHH
Confidence 775 45677766554443 34445677887765 355555543
No 6
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=95.77 E-value=0.018 Score=48.34 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=63.0
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcC---------CeeeCC--------------CCCCcEEEEeecccccch--HHH
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDN--------------SEEADIWLINTCTVKSPS--QSA 113 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g---------~~~~~~--------------~~~AD~viinTCtv~~~a--~~~ 113 (453)
.+|-+-+.|=..-..--..++..|+..| |++++- .++||+|.+ |+..+... ...
T Consensus 20 ~~vv~~~~g~D~HdiG~~iv~~~l~~~G~~~~~~~~~~eVi~LG~~vp~e~~v~~a~e~~~d~Vgl-S~l~t~~~~h~~~ 98 (160)
T d1xrsb1 20 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQN 98 (160)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHHHHHHHcCCcccccccceEEEeCCCCCCHHHHHHHHHhcCCCEEEE-eecccccchhHHH
Confidence 3666667773333445667778888888 787654 468999999 55665432 345
Q ss_pred HHHHHHHHhhCC----CCEEEEccccCCchh-hhcCCccEEEcCCC
Q 012929 114 MDTLIAKCKSAK----KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (453)
Q Consensus 114 ~~~~i~~~~~~~----~~vVvgGc~a~~~~e-~~~~~~d~vvG~~~ 154 (453)
+.++++.+++.| .+|++||.. ..++ ..++..|.+.|.+.
T Consensus 99 ~~~~i~~l~~~g~~d~v~vivGG~~--~~~~~a~~~GaD~~f~~g~ 142 (160)
T d1xrsb1 99 MTHLIELLEAEGLRDRFVLLCGGPR--INNEIAKELGYDAGFGPGR 142 (160)
T ss_dssp HHHHHHHHHHTTCGGGSEEEEECTT--CCHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHcCCCCceEEEEcCCC--CCHHHHHHcCCCEEcCCCC
Confidence 677788888766 478999944 3455 35667788888765
No 7
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=95.66 E-value=0.02 Score=46.73 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=66.0
Q ss_pred ceEEEEee-CCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhh
Q 012929 59 ETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (453)
Q Consensus 59 ~~~~i~t~-GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~ 123 (453)
+||-+-|. |+.|... ...++..|+..||+++.. ..+||+|.| |++.+... ..+.+.++++++
T Consensus 4 ~kVvi~~~~gD~H~lG-~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~l-S~~~~~~~-~~~~~~~~~l~~ 80 (137)
T d1ccwa_ 4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQGE-IDCKGLRQKCDE 80 (137)
T ss_dssp CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTHH-HHHTTHHHHHHH
T ss_pred CEEEEEecCCChhHHH-HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEE-eeccccch-HHHHHHHHHHHH
Confidence 45666555 4666555 778889999999999754 467999999 55665543 445666666665
Q ss_pred CC---CCEEEEccccCCc---hh----hhcCCccEEEcCCC-hhHHHHHHHH
Q 012929 124 AK---KPLVVAGCVPQGS---RD----LKELEGVSIVGVQQ-IDRVVEVVEE 164 (453)
Q Consensus 124 ~~---~~vVvgGc~a~~~---~e----~~~~~~d~vvG~~~-~~~l~~~l~~ 164 (453)
.+ .+|++||-.+... ++ ++++..|.|.|.+. .+.+.+.+.+
T Consensus 81 ~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~~~~~~~l~~ 132 (137)
T d1ccwa_ 81 AGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp TTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred hccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEECCCCCHHHHHHHHHH
Confidence 53 6799999876432 22 23445577886654 3344444443
No 8
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.67 E-value=0.045 Score=45.60 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=67.5
Q ss_pred eEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC
Q 012929 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~--------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~ 125 (453)
||-+-|.+=..-..--..++..|+..||++++- ..+||+|.| ||+.+.. ...+.++++.+++.+
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~l-S~l~~~~-~~~~~~~~~~l~~~g 85 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITPS-LDEMVNVAKEMERQG 85 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTHH-HHHHHHHHHHHHHTT
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhhCCCEEEE-ecccccc-hHHHHHHHHHHHhcc
Confidence 666655555555556678889999999999875 357999999 6776654 356777788887766
Q ss_pred --CCEEEEccccCC-chhhh---cCCccEEEcCCChhHHHHHHHHHhcC
Q 012929 126 --KPLVVAGCVPQG-SRDLK---ELEGVSIVGVQQIDRVVEVVEETLKG 168 (453)
Q Consensus 126 --~~vVvgGc~a~~-~~e~~---~~~~d~vvG~~~~~~l~~~l~~~~~g 168 (453)
.+|++||=..+. ..... ...+..+.+... ...+++.......
T Consensus 86 ~~~~vivGG~~~~~~~~~~~~~~~y~gad~ya~DA-~~av~~a~~Ll~~ 133 (156)
T d3bula2 86 FTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA-SRTVGVVAALLSD 133 (156)
T ss_dssp CCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH-HHHHHHHHHHTCT
T ss_pred ccceEEEecccccchHHHhhhccccccceeeccCH-HHHHHHHHHHhCc
Confidence 478888855432 22221 122333455543 3466666655443
No 9
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.07 E-value=0.14 Score=28.86 Aligned_cols=10 Identities=30% Similarity=0.726 Sum_probs=8.6
Q ss_pred CCCccccccc
Q 012929 203 LGACTYCKTK 212 (453)
Q Consensus 203 ~~~CsFC~~~ 212 (453)
||.|+||++-
T Consensus 2 PFkC~~CsFD 11 (29)
T d1x5wa2 2 PFKCNYCSFD 11 (29)
T ss_dssp SEECSSSSCE
T ss_pred Ccccceeccc
Confidence 7899999874
No 10
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=78.67 E-value=11 Score=28.34 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred EeeCCCcChhHHHHHHHHHHHcCCeeeCC-CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCC-chhh
Q 012929 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SRDL 141 (453)
Q Consensus 64 ~t~GC~~N~~dse~~~~~L~~~g~~~~~~-~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~-~~e~ 141 (453)
.|-| ..-|-+.+..+|++.+++-.++ .+.+|+++|=. ++.+.....+...|+.+++.|++||.-=+|.+. .|..
T Consensus 9 ~~~~---~~~d~~~~~er~e~~~~~Wid~~~~~~~vvIVL~-G~yt~~r~WI~~EI~~A~~~~KpIIgV~p~G~e~~P~~ 84 (111)
T d1eiwa_ 9 ITEG---EVEDYRVFLERLEQSGLEWRPATPEDADAVIVLA-GLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPE 84 (111)
T ss_dssp ECCC---CSHHHHHHHHHHHHHCSCEEECCSSSCSEEEEEG-GGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTT
T ss_pred EecC---chhhHHHHHHHHHHhhhcchhccccCCCEEEEEe-eccccCCHHHHHHHHHHHHcCCCeEEEEecCCCcCCHH
Confidence 4555 3358899999999999886544 66799888844 444333456777888898899999855555432 2321
Q ss_pred hcCCccEEEcCCChhHHHHHHHHHh
Q 012929 142 KELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 142 ~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
-.-.++.++|... ..+.+.+.+.+
T Consensus 85 l~~~A~~iVgWN~-~sIvdAIr~al 108 (111)
T d1eiwa_ 85 LEAVSSEVVGWNP-HCIRDALEDAL 108 (111)
T ss_dssp HHHHCSEEECSCH-HHHHHHHHHHH
T ss_pred HHHhhccccCCcH-HHHHHHHHHHh
Confidence 1123467999876 56777776654
No 11
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=61.97 E-value=5.9 Score=28.74 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=33.2
Q ss_pred eCCCcChhHHHHHHHHHHHcCCeee-----CCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 66 FGCSHNQSDSEYMAGQLSAFGYALT-----DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 66 ~GC~~N~~dse~~~~~L~~~g~~~~-----~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
.||..+ +++.. ..|++.|..+. +...++|+||+ |-++..... .+.++|+.|.+|.
T Consensus 29 sGSD~~--~~~~t-~~L~~~Gi~i~~gh~~~~i~~~d~vV~-SsAI~~~np-----el~~A~~~gIpv~ 88 (89)
T d1j6ua1 29 YGSNIE--ETERT-AYLRKLGIPIFVPHSADNWYDPDLVIK-TPAVRDDNP-----EIVRARMERVPIE 88 (89)
T ss_dssp EEECSS--CCHHH-HHHHHTTCCEESSCCTTSCCCCSEEEE-CTTCCTTCH-----HHHHHHHTTCCEE
T ss_pred EEEeCC--CChhH-HHHHHCCCeEEeeecccccCCCCEEEE-ecCcCCCCH-----HHHHHHHcCCCcc
Confidence 456555 34444 45999997664 23457999998 446653321 2456677777764
No 12
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=61.94 E-value=8 Score=30.21 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCeeeC----------------CCCCCcEEEEeecccccchHHHHHHHHHHH---hhCCCCEEEEccccC
Q 012929 76 EYMAGQLSAFGYALTD----------------NSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSAKKPLVVAGCVPQ 136 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~----------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~---~~~~~~vVvgGc~a~ 136 (453)
+.|+..|.+.|+++.- +..++|.++|-|.+.-...-..+...+..+ +-.|+++++=|++.+
T Consensus 22 ~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~ 101 (148)
T d1vmea1 22 KKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGW 101 (148)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCC
Confidence 4556677788987632 245789999977776543223344444443 335677777778765
Q ss_pred C
Q 012929 137 G 137 (453)
Q Consensus 137 ~ 137 (453)
.
T Consensus 102 ~ 102 (148)
T d1vmea1 102 A 102 (148)
T ss_dssp C
T ss_pred c
Confidence 3
No 13
>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=61.45 E-value=2.2 Score=37.56 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCchhhhcCCccEEEcC--CChhHHHHHH
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 162 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~~e~~~~~~d~vvG~--~~~~~l~~~l 162 (453)
.+||+++|+.-|+.+.+- ..+++..+ +...||+.|+.++..|++.....+.+-|. .+.+.+.+.+
T Consensus 166 p~aD~viiTGsTlvN~Tl---~~LL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i 232 (251)
T d2h1qa1 166 PECDYVYITCASVVDKTL---PRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 232 (251)
T ss_dssp GGCSEEEEETHHHHHTCH---HHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred hcCCEEEEEechhhcCCH---HHHHHhCC-cCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHH
Confidence 469999998877877653 34445442 33568899999999998655544443332 3444455444
No 14
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=60.46 E-value=1.9 Score=35.32 Aligned_cols=72 Identities=18% Similarity=0.397 Sum_probs=34.5
Q ss_pred eEEEEeeCCCcChhHHHHHHH-----HHHHcCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCC-EE-EE
Q 012929 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-LV-VA 131 (453)
Q Consensus 60 ~~~i~t~GC~~N~~dse~~~~-----~L~~~g~~-~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~-vV-vg 131 (453)
.++..++|| +-.|.|.++. .++..|.+ .+.++..||+++| |=++|......+.+.-+++ ..+| || +|
T Consensus 21 Slw~~~~g~--~cC~iE~~a~~~p~yD~eRfG~~~~~~sPR~ADvllV-tG~vT~km~~~l~~~y~qm--PePK~VIA~G 95 (161)
T d2fug61 21 SLWPATFGL--ACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIV-AGRLSKKMAPVMRRVWEQM--PDPKWVISMG 95 (161)
T ss_dssp CCCCCCEEC--SHHHHHTGGGCCC-----------------CCCCEEE-ESCCBTTTHHHHHHHHHTS--CSSCCEEEEH
T ss_pred CCceeeccc--cccHHHHhhccCCccchhhhcccccCCCcccCcEEEE-eccchHHHHHHHHHHHHhC--CCCceEEEec
Confidence 345556665 3366665543 34566876 4468899999999 6788877655555554444 2344 33 45
Q ss_pred ccccC
Q 012929 132 GCVPQ 136 (453)
Q Consensus 132 Gc~a~ 136 (453)
-|..+
T Consensus 96 aCa~s 100 (161)
T d2fug61 96 ACASS 100 (161)
T ss_dssp HHHHS
T ss_pred ccccC
Confidence 55433
No 15
>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=55.39 E-value=44 Score=28.12 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc-ChhHHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEV 298 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l 298 (453)
..+++++.++++.++++|++.+.+-- + +.+. ..-.+.++++.+.+. ....+++. .|-. .+.+.+ ++.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikv---g--~~~~-~~di~~v~~vr~~~g--~~~~l~vD-an~~~~~~~Ai-~~~~~ 87 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKI---G--GAPI-EEDRMRIEAVLEEIG--KDAQLAVD-ANGRFNLETGI-AYAKM 87 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEEC---S--SSCH-HHHHHHHHHHHHHHT--TTCEEEEE-CTTCCCHHHHH-HHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC---C--CCCH-HHHHHHHHHHHHhcc--CCceEEec-ccccccchhHH-HHHhh
Confidence 46899999999999999999998841 1 1111 122456666666554 44567776 3332 233332 33333
Q ss_pred HhCCCCceeeecccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCcEEEEEEEE-eCC-CCCHHHHH
Q 012929 299 LRHPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFN 365 (453)
Q Consensus 299 ~~~~~~~~~l~iglESgs~~vLk~m~R~-----------~t~e~~~~~i~~lr~~~pgi~v~~~~Iv-G~P-gET~ed~~ 365 (453)
+.. ....++.=|+...+.+-++.+.+. ++..++.+.++.-... + ..|++- ... .-..-.+.
T Consensus 88 l~~-~~i~wiEeP~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~--~---~~Di~~~d~~~~GGit~~~ 161 (247)
T d1tzza1 88 LRD-YPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMR--P---DRDWLQFDCALSYGLCEYQ 161 (247)
T ss_dssp HTT-SCCSEEECCSCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCC--T---TTCEECCCTTTTTCHHHHH
T ss_pred cch-hhhhhhccccccccchhhhhhhhccccccccchhhhhhHHHHHHHHccCCc--C---cceeEeeccccccchhHHH
Confidence 333 234688888988888888877653 3556666655432100 0 001221 110 11345667
Q ss_pred HHHHHHHhcCCC
Q 012929 366 QTVNLIKEYKFP 377 (453)
Q Consensus 366 ~tl~~i~~l~~~ 377 (453)
+..++++..++.
T Consensus 162 ~i~~~a~~~g~~ 173 (247)
T d1tzza1 162 RTLEVLKTHGWS 173 (247)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 778888887764
No 16
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}
Probab=55.31 E-value=7 Score=32.37 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=45.0
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC--C---CCCCcEEEEeecccccchHH-----HHHHHHHHHhhCCCC
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---SEEADIWLINTCTVKSPSQS-----AMDTLIAKCKSAKKP 127 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~--~---~~~AD~viinTCtv~~~a~~-----~~~~~i~~~~~~~~~ 127 (453)
|+||.|+.+. =|..+. ...|++.|++.+. . .+++|.+||-. +.-..+.. ...+.|+.+.+++++
T Consensus 1 m~~igv~~~~--G~~~~~---~~al~~~G~~~~~i~~~~~l~~~D~lIlPG-G~~~~~~~~~~~~~~~~~I~~~~~~g~p 74 (195)
T d2nv0a1 1 MLTIGVLGLQ--GAVREH---IHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTMRRLIDTYQFMEPLREFAAQGKP 74 (195)
T ss_dssp CCEEEEECSS--SCCHHH---HHHHHHTTCEEEEECSGGGGGGCSEEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcEEEEEecC--ChHHHH---HHHHHHCCCcEEEECCHHHHhhCCEEEECC-CCccHHHHHhhhchhcchhhhhhhhcce
Confidence 7899999992 377663 4678999987642 2 35789999944 32222111 123456666667777
Q ss_pred EEEEcccc
Q 012929 128 LVVAGCVP 135 (453)
Q Consensus 128 vVvgGc~a 135 (453)
++|=|..
T Consensus 75 -ilGIC~G 81 (195)
T d2nv0a1 75 -MFGTCAG 81 (195)
T ss_dssp -EEEETHH
T ss_pred -eeecccc
Confidence 5666764
No 17
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=54.11 E-value=3.3 Score=36.21 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 012929 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381 (453)
Q Consensus 329 ~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i 381 (453)
.+.+.++.+.+.+. |+.+.... .|+|+....++.++++++++++.+.+.+
T Consensus 122 ~~~l~~l~~~a~~~--Gv~l~lE~-~~~~~~~~~~~~~~~~ll~~v~~~~vg~ 171 (278)
T d1i60a_ 122 VDVLTELSDIAEPY--GVKIALEF-VGHPQCTVNTFEQAYEIVNTVNRDNVGL 171 (278)
T ss_dssp HHHHHHHHHHHGGG--TCEEEEEC-CCCTTBSSCSHHHHHHHHHHHCCTTEEE
T ss_pred HHHHHHHHHHHHHh--CCeeeeee-ccccccccCCHHHHHHHHHHhhcccccc
Confidence 45566666677777 88877654 3666655567777888888887665554
No 18
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=53.23 E-value=13 Score=30.66 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=44.6
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCeee--CC---CCCCcEEEEeecccccchHH-----HHHHHHHHHhhCCCC
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DN---SEEADIWLINTCTVKSPSQS-----AMDTLIAKCKSAKKP 127 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~--~~---~~~AD~viinTCtv~~~a~~-----~~~~~i~~~~~~~~~ 127 (453)
.|||.|+-++ =|..+. ...|+..|++.+ .+ ..++|.+||-. +.-..+.. .+.+.|+.+.+.|++
T Consensus 6 ~mkIgii~~~--Gn~~s~---~~al~~~G~~~~~v~~~~~l~~~D~lIlPG-G~~~~~~~~l~~~~l~~~I~~~~~~gkP 79 (202)
T d1q7ra_ 6 NMKIGVLGLQ--GAVREH---VRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTMRRLIDRYGLMEPLKQFAAAGKP 79 (202)
T ss_dssp CCEEEEESCG--GGCHHH---HHHHHHTTCEEEEECSGGGGTTCSEEEECC-CCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCEEEEEECC--CCHHHH---HHHHHHCCCcEEEECCHHHHhcCCEEEECC-CCcHHHHHHhhhhHHHHHHhhhccccce
Confidence 5899999882 266553 467889998764 33 44699999955 43222221 124556777677777
Q ss_pred EEEEcccc
Q 012929 128 LVVAGCVP 135 (453)
Q Consensus 128 vVvgGc~a 135 (453)
| +|=|..
T Consensus 80 i-LGIClG 86 (202)
T d1q7ra_ 80 M-FGTCAG 86 (202)
T ss_dssp E-EEETTH
T ss_pred e-eeeehh
Confidence 4 566764
No 19
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=48.46 E-value=28 Score=27.97 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=45.6
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++||+. ||-....=.+.++..|...|+...-. ..+=|++++-|-+ ..+ +.+.+.++.+|++|.+|| +
T Consensus 38 ~~I~~~--G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~~~~~~~~Dl~I~iS~s--G~t-~~~i~~~~~ak~~g~~vI~I 112 (177)
T d1jeoa_ 38 KKIFIF--GVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 112 (177)
T ss_dssp SSEEEE--CCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CeEEEE--EccHHHHHHHHHHHHHHhcCCcccccccccccccCCCCeEEEeccc--cch-HHHHHHHHHHHHcCCceeEE
Confidence 466654 66666777778888888889765421 2344787774433 333 357788899999998766 5
Q ss_pred E
Q 012929 131 A 131 (453)
Q Consensus 131 g 131 (453)
+
T Consensus 113 T 113 (177)
T d1jeoa_ 113 V 113 (177)
T ss_dssp E
T ss_pred e
Confidence 5
No 20
>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=48.06 E-value=40 Score=28.06 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~-d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~ 299 (453)
-++|+++++++.++++|++.+.+-- |. +.. .-.+.++++.+.+. ...++++..-..-...+.. ++.+.+
T Consensus 14 ~~pe~~~~~a~~~~~~G~~~~Kiki------g~~~~~-~d~~~i~~ir~~~g--~~~~i~vD~N~~~~~~~a~-~~~~~l 83 (234)
T d1jpma1 14 NSPEEMAADAENYLKQGFQTLKIKV------GKDDIA-TDIARIQEIRKRVG--SAVKLRLDANQGWRPKEAV-TAIRKM 83 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEEC------SSSCHH-HHHHHHHHHHHHHG--GGSEEEEECTTCSCHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC------CCCCHH-HHHHHHHHHHHHcC--chhhhhhhcccccchHHHH-HHHHHH
Confidence 3689999999999999999988741 21 111 11455566655554 4567777632222222222 233322
Q ss_pred h-CCCCceeeecccCCCCHHHHHhhc
Q 012929 300 R-HPCVYSFLHVPVQSGSDAVLSAMN 324 (453)
Q Consensus 300 ~-~~~~~~~l~iglESgs~~vLk~m~ 324 (453)
. ..-...++.=|+...+-+-++.++
T Consensus 84 e~~~~~i~~~EeP~~~~d~~~~~~l~ 109 (234)
T d1jpma1 84 EDAGLGIELVEQPVHKDDLAGLKKVT 109 (234)
T ss_dssp HHTTCCEEEEECCSCTTCHHHHHHHH
T ss_pred HhccCceeeecCCccccCHHHHHHhh
Confidence 2 222345778888776766665553
No 21
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=47.81 E-value=2.3 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=26.9
Q ss_pred EEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC
Q 012929 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (453)
Q Consensus 61 ~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~ 92 (453)
+-=.--||++-..|-+.+...|+++||+++..
T Consensus 47 ~~TL~~aa~~~gidl~~~~~~L~~aG~~v~g~ 78 (79)
T d2fi0a1 47 KVSLKQGSKLAGTPMDKIVRTLEANGYEVIGL 78 (79)
T ss_dssp HCBHHHHHHHHTCCHHHHHHHHHHTTCEEECC
T ss_pred HccHHHHHHHcCCCHHHHHHHHHHCCCeeeCC
Confidence 33345689999999999999999999999764
No 22
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=47.47 E-value=73 Score=26.38 Aligned_cols=146 Identities=10% Similarity=0.097 Sum_probs=80.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~--l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
-+.+..++.+|++.+.+.|+..+. +.|.+|.. ..... .+.++.+.+... -...+.+...+|...-+ .+
T Consensus 9 l~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvp---n~s~g-~~~i~~i~~~t~--~~~dvHLMv~~P~~~i~---~~- 78 (217)
T d2flia1 9 LAADYANFASELARIEETDAEYVHIDIMDGQFVP---NISFG-ADVVASMRKHSK--LVFDCHLMVVDPERYVE---AF- 78 (217)
T ss_dssp GGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS---CBCBC-HHHHHHHHTTCC--SEEEEEEESSSGGGGHH---HH-
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCC---ccccC-HHHHHHHHhcCC--CceEeEEEecCHHHHHH---HH-
Confidence 345667888999999999998765 44544422 11111 467777765321 11244555456653322 22
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
... ++..+.+-+|+.++ ..+.++.+++. |+.+.. .-.|....+.+...++ .+
T Consensus 79 --~~~--ga~~i~~H~E~~~~--------------~~~~i~~i~~~--g~~~Gi---al~p~T~~~~~~~~l~-----~i 130 (217)
T d2flia1 79 --AQA--GADIMTIHTESTRH--------------IHGALQKIKAA--GMKAGV---VINPGTPATALEPLLD-----LV 130 (217)
T ss_dssp --HHH--TCSEEEEEGGGCSC--------------HHHHHHHHHHT--TSEEEE---EECTTSCGGGGGGGTT-----TC
T ss_pred --HHc--CCcEEEeccccccC--------------HHHHHHHHHhc--CCeEEE---EecCCcchhHHHhHHh-----hc
Confidence 222 23455555776543 45668889998 887643 3347766666543222 45
Q ss_pred CeEEEEecccCCCCH--hH----HHHHHHHHHHH
Q 012929 377 PQVHISQFYPRPGIQ--FL----NLDSTELLSLL 404 (453)
Q Consensus 377 ~~i~i~~~sp~pGT~--~~----~~R~~~l~~~~ 404 (453)
+.+.+..-. ||.. .+ -.|.+++.++.
T Consensus 131 d~vliM~V~--pG~~Gq~f~~~~~~ki~~l~~~~ 162 (217)
T d2flia1 131 DQVLIMTVN--PGFGGQAFIPECLEKVATVAKWR 162 (217)
T ss_dssp SEEEEESSC--TTCSSCCCCGGGHHHHHHHHHHH
T ss_pred CEEEEEEEc--CcccccccchhhHHHHHHHHHHH
Confidence 666655554 5532 22 45555555544
No 23
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}
Probab=47.13 E-value=21 Score=28.27 Aligned_cols=34 Identities=9% Similarity=-0.151 Sum_probs=23.6
Q ss_pred CceEEEEee--CCCcChh-HHHHHHHHHHHcCCeeeC
Q 012929 58 TETIYMKTF--GCSHNQS-DSEYMAGQLSAFGYALTD 91 (453)
Q Consensus 58 ~~~~~i~t~--GC~~N~~-dse~~~~~L~~~g~~~~~ 91 (453)
|+|||+-.- -.+-.+. -.+.++..|++.|++...
T Consensus 1 MkkIYLAGP~~F~~d~~~~~~~~i~~~l~~~g~~~~~ 37 (152)
T d2f62a1 1 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI 37 (152)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 788999863 2222233 367788999999998764
No 24
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=44.44 E-value=6.9 Score=32.55 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.8
Q ss_pred eeCCCcChhHHHHHHHHHHHcCCeeeCC-------------CCCCcEEEEee
Q 012929 65 TFGCSHNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINT 103 (453)
Q Consensus 65 t~GC~~N~~dse~~~~~L~~~g~~~~~~-------------~~~AD~viinT 103 (453)
-+||--|.- -++..|++.|++++.. ..+||+++++.
T Consensus 49 l~g~v~~~l---glr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~p 97 (186)
T d2naca2 49 LLGSVSGEL---GLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQP 97 (186)
T ss_dssp CCSBTTTGG---GCHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBT
T ss_pred hcccccchh---hHHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEec
Confidence 478988876 5788999999997632 25899999864
No 25
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}
Probab=42.60 E-value=98 Score=26.46 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=63.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEE-e--cCCcChhHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-M--TNPPFILEHLKEI 295 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~-~--~~p~~i~~~l~~l 295 (453)
|.++.+.+.+.+..+...|++.|..+..|....+......-.+|++.+... +...+.+. + .+|..-..+ .++
T Consensus 72 r~~n~~~l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~----~~~~igva~~Peghp~~~~~~-~~~ 146 (275)
T d1b5ta_ 72 IDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVAAYPEVHPEAKSAQ-ADL 146 (275)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHH----CCCEEEEEECTTCCTTCSCHH-HHH
T ss_pred ccccHhHHHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHH----HhcCCceeecCCCCccchhHH-HHH
Confidence 456778888999999999999999887676544332223345666655443 22334443 1 233221111 112
Q ss_pred HHHHhC-CCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC
Q 012929 296 AEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358 (453)
Q Consensus 296 ~~l~~~-~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg 358 (453)
..+.+. ..+..++. -| =-++.+.+.+.++.+++. |+.+ -++.|+++
T Consensus 147 ~~lk~K~~aGA~fii--TQ-----------~~fD~~~~~~~~~~~~~~--gi~~--Pi~~GI~p 193 (275)
T d1b5ta_ 147 LNLKRKVDAGANRAI--TQ-----------FFFDVESYLRFRDRCVSA--GIDV--EIIPGILP 193 (275)
T ss_dssp HHHHHHHHHTCCEEE--EE-----------ECSCHHHHHHHHHHHHHT--TCCS--CEEEEECC
T ss_pred HHHHHHHHhhcCeee--ee-----------eeecHHHHHHHHHHHHHc--CCCC--cccccccc
Confidence 222211 01111110 01 135777888888888888 7643 46667655
No 26
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=42.56 E-value=29 Score=28.22 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred CceEEEEeeCCCcChhHHHHHHHHHHHcCCee--eCC------CCCCcEEEEeecccccc-hHHHHHHHHHHHhhCCCCE
Q 012929 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDN------SEEADIWLINTCTVKSP-SQSAMDTLIAKCKSAKKPL 128 (453)
Q Consensus 58 ~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~--~~~------~~~AD~viinTCtv~~~-a~~~~~~~i~~~~~~~~~v 128 (453)
|+||.|+-+|.+-+. .++..|++.|.++ +.. ....|.+||..-..... ....+..+++.+.+.+++|
T Consensus 1 m~ki~iiD~g~~~~~----~i~r~l~~lg~~~~i~~~d~~~~~~~~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~Pi 76 (196)
T d2a9va1 1 MLKIYVVDNGGQWTH----REWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPI 76 (196)
T ss_dssp CCBEEEEEESCCTTC----HHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred CCEEEEEECCCcHHH----HHHHHHHHCCCeEEEEeCCCCHHHHhcCCcEEEeccccccccccchhhhHHHHHhhcCceE
Confidence 789999999987654 3556777788654 221 24568888855332211 2223455555555555554
Q ss_pred EEEcccc
Q 012929 129 VVAGCVP 135 (453)
Q Consensus 129 VvgGc~a 135 (453)
+|=|+.
T Consensus 77 -lGIC~G 82 (196)
T d2a9va1 77 -LGICVG 82 (196)
T ss_dssp -EEETHH
T ss_pred -EEeehh
Confidence 344653
No 27
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=42.49 E-value=50 Score=24.17 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCCE-EEEccccCCc
Q 012929 72 QSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPL-VVAGCVPQGS 138 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-~~~v-VvgGc~a~~~ 138 (453)
..-.+.+...|+..||++..- ....|++++.-..-.. .-.+.++++++. +.+| +++|......
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlillD~~mp~~----~G~~~~~~i~~~~~~pvI~lt~~~~~~~ 85 (117)
T d2a9pa1 10 KPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEI----DGLEVAKTIRKTSSVPILMLSAKDSEFD 85 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSS----CHHHHHHHHHTTCCCCEEEEESCCSHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEeccccCCC----CccHHHHHHHhCCCCCEEEEecCCCHHH
Confidence 334567788889999987532 2457999986432111 124455555543 3444 4666432222
Q ss_pred hhh-hcCCcc-EEEcCCChhHHHHHHHHH
Q 012929 139 RDL-KELEGV-SIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 139 ~e~-~~~~~d-~vvG~~~~~~l~~~l~~~ 165 (453)
... .+..++ .+.-+-+...+...++..
T Consensus 86 ~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~ 114 (117)
T d2a9pa1 86 KVIGLELGADDYVTKPFSNRELQARVKAL 114 (117)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 211 133444 577776666666666544
No 28
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=41.67 E-value=58 Score=23.89 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC----CCEE-EEccc
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLV-VAGCV 134 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~----~~vV-vgGc~ 134 (453)
|..-.+.+...|+..||++..- ....|+|++.- ..-. -.-.+.++++|+.. .+|| ++|-.
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~-~mp~---~dG~el~~~ir~~~~~~~iPii~lt~~~ 85 (123)
T d1mb3a_ 10 NELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDI-QLPE---ISGLEVTKWLKEDDDLAHIPVVAVTAFA 85 (123)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEES-BCSS---SBHHHHHHHHHHSTTTTTSCEEEEC---
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEe-ccCC---CcHHHHHHHHHhCCCcCCCCeEEEEEec
Confidence 4445677888888899987532 23579998863 2222 12455666666532 3544 44433
Q ss_pred cCCchh-hhcCCcc-EEEcCCChhHHHHHHHHHhc
Q 012929 135 PQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 135 a~~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~~ 167 (453)
...... ......+ .+.-+-....+.+.+...++
T Consensus 86 ~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 120 (123)
T d1mb3a_ 86 MKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (123)
T ss_dssp ---CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 322222 2233445 45566666677777766553
No 29
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.06 E-value=39 Score=25.00 Aligned_cols=91 Identities=9% Similarity=0.050 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC-CCC-EEEEccccCC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKP-LVVAGCVPQG 137 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~-~~~-vVvgGc~a~~ 137 (453)
|..-.+.+...|.+.||++... ....|+|++.-..--.. ..+.++++++. +.+ |+++|..-..
T Consensus 11 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~----G~~~~~~~r~~~~~pii~lt~~~~~~ 86 (121)
T d1xhfa1 11 ELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN----GLLLARELREQANVALMFLTGRDNEV 86 (121)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSC----HHHHHHHHHHHCCCEEEEEESCCSHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHhcCCCEEEeecccCCcc----CcHHHHHHHhcCCCcEEEEECCCCHH
Confidence 4445677888888899987542 34679999974322222 23444544433 444 5567754322
Q ss_pred chhh-hcCCcc-EEEcCCChhHHHHHHHHH
Q 012929 138 SRDL-KELEGV-SIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 138 ~~e~-~~~~~d-~vvG~~~~~~l~~~l~~~ 165 (453)
.... .+...+ .+.-+-....+...++..
T Consensus 87 ~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~ 116 (121)
T d1xhfa1 87 DKILGLEIGADDYITKPFNPRELTIRARNL 116 (121)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2211 133444 566666666666655544
No 30
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=40.56 E-value=60 Score=27.22 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc-ChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~-~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~ 296 (453)
...++|++.+.++.++++|++.+.|- +......+.+.. .-.+.++++.+.+. ....+++. .|-. ...+.+ .+.
T Consensus 20 ~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~-~d~~~v~avR~~~G--~~~~l~vD-aN~~~~~~~A~-~~~ 94 (255)
T d1rvka1 20 GLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVK-MDLKACAAVREAVG--PDIRLMID-AFHWYSRTDAL-ALG 94 (255)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHH-HHHHHHHHHHHHHC--TTSEEEEE-CCTTCCHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHH-HHHHHHHHHHHHcC--Cccceecc-cccccccchhh-hhh
Confidence 45579999999999999999999983 322222222211 12456666666553 44567776 3332 233332 233
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcC
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R 325 (453)
+.+.. ....++.=|+-.-+.+-++.+++
T Consensus 95 ~~l~~-~~l~~iEeP~~~~d~~~~~~l~~ 122 (255)
T d1rvka1 95 RGLEK-LGFDWIEEPMDEQSLSSYKWLSD 122 (255)
T ss_dssp HHHHT-TTCSEEECCSCTTCHHHHHHHHH
T ss_pred hhccc-chhhhhcCCcccccHHHHHHHHH
Confidence 33332 23467887887777666666654
No 31
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=40.49 E-value=91 Score=25.76 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEE--EEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEV--WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI--~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~ 296 (453)
-+.+.-++.+|++.+.+.|+..+ -+.|.++... ...+ .+.++.+.+..+ ....+.+...+|....+. +.
T Consensus 9 l~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn-~t~~---~~~i~~i~~~~~--~~~dvHLMv~~p~~~i~~---~~ 79 (220)
T d1h1ya_ 9 LSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPN-LTIG---APVIQSLRKHTK--AYLDCHLMVTNPSDYVEP---LA 79 (220)
T ss_dssp GGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-BCBC---HHHHHHHHTTCC--SEEEEEEESSCGGGGHHH---HH
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEeeecCccccc-cccC---chhhhhhhhhcc--hhhhhHHHhcchhhhhHH---hh
Confidence 34566788999999999888865 4556544211 1111 677888865432 223455555567644332 22
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK- 375 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~- 375 (453)
.. ++..+.+-+|+..+ ...+.++.+++. |+.+..-+- |+...+++.. ++..+.
T Consensus 80 ---~~--g~~~I~~H~E~~~~-------------~~~~~i~~i~~~--g~~~Glal~---p~t~~~~~~~---~l~~~~~ 133 (220)
T d1h1ya_ 80 ---KA--GASGFTFHIEVSRD-------------NWQELIQSIKAK--GMRPGVSLR---PGTPVEEVFP---LVEAENP 133 (220)
T ss_dssp ---HH--TCSEEEEEGGGCTT-------------THHHHHHHHHHT--TCEEEEEEC---TTSCGGGGHH---HHHSSSC
T ss_pred ---hc--ccceeeecccccch-------------hHHHHHHHHHHc--CCCcceeec---cccchhHHHH---HHhcccc
Confidence 22 23455565665332 245677888898 877764333 4444444433 344433
Q ss_pred CCeEEEEecccCCCC
Q 012929 376 FPQVHISQFYPRPGI 390 (453)
Q Consensus 376 ~~~i~i~~~sp~pGT 390 (453)
++.+-+ ++..||-
T Consensus 134 ~d~vli--m~v~PG~ 146 (220)
T d1h1ya_ 134 VELVLV--MTVEPGF 146 (220)
T ss_dssp CSEEEE--ESSCTTC
T ss_pred cceEEE--EecCCCC
Confidence 454544 4445553
No 32
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.96 E-value=2.6 Score=23.46 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=9.0
Q ss_pred CCCcccccccc
Q 012929 203 LGACTYCKTKH 213 (453)
Q Consensus 203 ~~~CsFC~~~~ 213 (453)
|+.|.+|.+.+
T Consensus 1 py~C~~CnF~F 11 (29)
T d1bboa2 1 PYHCTYCNFSF 11 (29)
T ss_dssp CEECSSSSCEE
T ss_pred CcccceeeeeE
Confidence 68899998864
No 33
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=38.63 E-value=28 Score=28.25 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCC-------CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE-E
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~-------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV-v 130 (453)
++|||. ||..+..=.+++...|...|+.+.-. ..+=|++++- +....+ ..+.+.++.+|+.|.+|| +
T Consensus 41 ~~I~i~--G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~~~~i~~~Dl~i~i--S~sG~t-~~~i~~~~~ak~~g~~vI~I 115 (192)
T d1vima_ 41 RSIFVI--GAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGI--SGSGET-TSVVNISKKAKDIGSKLVAV 115 (192)
T ss_dssp SCEEEE--CSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEE--CSSSCC-HHHHHHHHHHHHHTCEEEEE
T ss_pred CcEEEE--ecCcchhhhhhhhhhhcccccccccccccccccccccccceec--cccccc-hhhHHHHHHHHhhcccceee
Confidence 466665 66677778888888899889865322 2234777763 344333 357888899999998766 4
Q ss_pred Ecc
Q 012929 131 AGC 133 (453)
Q Consensus 131 gGc 133 (453)
++-
T Consensus 116 T~~ 118 (192)
T d1vima_ 116 TGK 118 (192)
T ss_dssp ESC
T ss_pred eec
Confidence 553
No 34
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent tetrahydromethanopterin reductase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.54 E-value=1.1e+02 Score=25.97 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEec--CCcChhHHH--HHHH
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--NPPFILEHL--KEIA 296 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~--~p~~i~~~l--~~l~ 296 (453)
.|++++++.++..-+.|+..+|+.. +.+. .+...++-.+.... .++++++. .+..-.+.. +++.
T Consensus 11 ~~~~~~~~~a~~Ae~~Gfd~~w~~e-h~~~------~~~~~~~a~~a~~T-----~~i~lgt~v~~~~~~~P~~~A~~~a 78 (321)
T d1f07a_ 11 EPIEKIVKLVKLAEDVGFEYAWITD-HYNN------KNVYETLALIAEGT-----ETIKLGPGVTNPYVRSPAITASAIA 78 (321)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECC-CTTS------SCHHHHHHHHHHTC-----SSCEEEESSBCSSSBCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEcc-cCCC------CcHHHHHHHHHHHC-----CcceEEEEEecCcccChHHHHHHHH
Confidence 3788999988888888999999865 3322 23355666776643 45667642 222211111 1122
Q ss_pred HHHhCCCCceeeecccCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 012929 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 343 (453)
Q Consensus 297 ~l~~~~~~~~~l~iglESgs~~vLk~m~R~~--t~e~~~~~i~~lr~~~ 343 (453)
.+-...++ ++.+|+=+|++..+..++-.+ ..+.+.+.++.+++.+
T Consensus 79 tld~ls~G--R~~lGig~G~~~~~~~~g~~~~~~~~~~~e~~~ii~~l~ 125 (321)
T d1f07a_ 79 TLDELSNG--RATLGIGPGDKATFDALGIEWVKPVSTIRDAIAMMRTLL 125 (321)
T ss_dssp HHHHHTTS--CBCEEECCCCHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccC--ceEEEeeecchHHHHHhCCChhhHHHHHHHHHHHHHhhc
Confidence 11111233 677888888888788887655 3688888888888654
No 35
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}
Probab=37.16 E-value=91 Score=25.96 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=61.7
Q ss_pred eEEEEecCCcChhHHHHHHHHHHhCCCCceeeecccCCCCHHHH----HhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEE
Q 012929 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL----SAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352 (453)
Q Consensus 277 ~ir~~~~~p~~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vL----k~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~ 352 (453)
.+.+.. -|.. +...++.++++..+.--.+|+|+|..+-.-. ..+.-+.+.+++...+++..+.+|+..=-.+-
T Consensus 27 pvT~Ai-~P~~--~~~~~~a~~A~~~g~EvllhlPMep~~~~~~~~gp~~L~~~~~~~ei~~~l~~~l~~vP~avGvnNh 103 (224)
T d2nlya1 27 PVTVAV-MPFL--EHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNH 103 (224)
T ss_dssp CEEEEE-CSSS--TTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CeEEEE-CCCC--CchHHHHHHHHHCCCeEEEEcccCcccCCcCCCCCCcCCCCCCHHHHHHHHHHHHHhCcccEEEecC
Confidence 466663 3431 2223345555443433589999998664321 23455678999999999999999996433333
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 353 ICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 353 IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
|=..=.++.+.+...++.+++.++
T Consensus 104 mGS~~T~~~~~m~~v~~~l~~~gl 127 (224)
T d2nlya1 104 MGSKIVENEKIMRAILEVVKEKNA 127 (224)
T ss_dssp ECTTGGGCHHHHHHHHHHHHHTTC
T ss_pred cccchhCCHHHHHHHHHHHHHcCC
Confidence 333336888999999999999875
No 36
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=36.99 E-value=21 Score=27.68 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCeeeC-------------CCCCCcEEEEeecccccchHHHHHHHHHHHhh---CCCCEEEEccccC
Q 012929 76 EYMAGQLSAFGYALTD-------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQ 136 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~-------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~---~~~~vVvgGc~a~ 136 (453)
+.++..|.+.|+++.- +..++|+++|-|-+.-...-..+...+..+.. .++++.+=|++.+
T Consensus 21 ~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~Gspt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~ 97 (152)
T d1e5da1 21 RVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGW 97 (152)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESS
T ss_pred HHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEEeccccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCC
Confidence 3455556678887632 12368999996666544333345555554432 3566666676654
No 37
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=36.46 E-value=41 Score=26.99 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=44.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~-------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv 130 (453)
++|++ +||.....=.+.++..|...|+...- ...+-|++++= +....+ ..+.+.++.+|++|.+||+
T Consensus 38 ~~I~i--~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~Dl~I~i--S~sG~t-~~~i~~~~~ak~~g~~iI~ 111 (186)
T d1m3sa_ 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIG--SGSGET-KSLIHTAAKAKSLHGIVAA 111 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEE--CSSSCC-HHHHHHHHHHHHTTCEEEE
T ss_pred CeEEE--EECcHHHHHHHHHHHHHHhccCCCCcCChhhcccCCCCCEEEEe--cCccch-hhhHHHHHHHHHCCCCEEE
Confidence 46655 55556666677788888888976532 23455787773 343333 3567888999999988764
No 38
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]}
Probab=36.17 E-value=58 Score=28.53 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEe--c-----CCcChhHHHHHH
Q 012929 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--T-----NPPFILEHLKEI 295 (453)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~--~-----~p~~i~~~l~~l 295 (453)
.+++++.++..-+.|+..+|+.+-.+..|+. ..+-.-++-.+..... +|++++ + +|-.+-+....|
T Consensus 21 ~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~--~~~p~~~~a~~a~~T~-----~I~lgt~v~~~~~~~P~~~A~~~atL 93 (355)
T d1luca_ 21 MKRLVNLGKASEGCGFDTVWLLEHHFTEFGL--LGNPYVAAAHLLGATE-----TLNVGTAAIVLPTAHPVRQAEDVNLL 93 (355)
T ss_dssp HHHHHHHHHHTGGGTCSEEEECCCCSBTTBC--CSCHHHHHHHHHHHCS-----SCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecccCCCCCCC--cCCHHHHHHHHHHhCC-----ceeEeeeccCCCCchHHHHHHHHHHH
Confidence 4666666666666699999987644444432 1344556667766542 344442 1 222233333223
Q ss_pred HHHHhCCCCceeeecccCCCC-HHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 012929 296 AEVLRHPCVYSFLHVPVQSGS-DAVLSAMNREY--TLSDFRTVVDTLIELV 343 (453)
Q Consensus 296 ~~l~~~~~~~~~l~iglESgs-~~vLk~m~R~~--t~e~~~~~i~~lr~~~ 343 (453)
..+. .+ ++.+|+=+|. +..++.++... ..+.+.+.++.+++.+
T Consensus 94 d~ls---~G--R~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~ 139 (355)
T d1luca_ 94 DQMS---KG--RFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGF 139 (355)
T ss_dssp HHHH---TS--CEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred Hhhc---CC--CceeeeeecccchhhhhhccccccccchhHHHHHHHHhhc
Confidence 3332 23 6777887774 66778887764 3455666666666643
No 39
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.52 E-value=92 Score=24.70 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=67.4
Q ss_pred CCCCCCCceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEE-
Q 012929 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV- 130 (453)
Q Consensus 52 ~~~~~~~~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVv- 130 (453)
-+..|+..+|+|++-.=+.....-+.....|++.||+++..+.--.- ...+-...++++.++.+.+..++.+.|+
T Consensus 7 ~~~~P~Gd~I~iiAPS~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~----~~~~agtd~~Ra~dL~~a~~dp~i~aI~~ 82 (167)
T d1zl0a2 7 QTWQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEAR----YRYLAGTVEQRLEDLHNAFDMPDITAVWC 82 (167)
T ss_dssp CCCCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCC----BTTBSSCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCCCCCCCEEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEECcccccc----cCcccCCHHHHHHHHHHhccCcCCCEEEE
Confidence 34556668999998877777777788888999999998754221100 1122234466777777777777766554
Q ss_pred --EccccCCc-hhh--hcC---CccEEEcCCChhHHHHHHH
Q 012929 131 --AGCVPQGS-RDL--KEL---EGVSIVGVQQIDRVVEVVE 163 (453)
Q Consensus 131 --gGc~a~~~-~e~--~~~---~~d~vvG~~~~~~l~~~l~ 163 (453)
||-.+... |.+ ..+ +--.++|-.+...+-..+.
T Consensus 83 ~rGGyGa~rlL~~lD~~~i~~~~pK~~iGySDiTaL~~~l~ 123 (167)
T d1zl0a2 83 LRGGYGCGQLLPGLDWGRLQAASPRPLIGFSDISVLLSAFH 123 (167)
T ss_dssp SCCSSCGGGGTTTCCHHHHHHSCCCCEEECGGGHHHHHHHH
T ss_pred CccHHHHHHHHhhcchhhhhhcCCCEEEEecHHHHHHHHHH
Confidence 66655433 322 222 1124889888776665554
No 40
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]}
Probab=32.93 E-value=45 Score=28.89 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=54.5
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeee--CCCCC-------CcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEE-------ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~--~~~~~-------AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
+-|+-+| |.+=....+..|.+.|-..+ +.+++ ||.++||.=+.+....+.+...++.+.+.++++|
T Consensus 18 PlVh~iT-----N~V~~n~~AN~~La~GasPiMa~~~~E~~e~~~~a~alviN~Gtl~~~~~~~m~~a~~~a~~~~~PvV 92 (269)
T d1ekqa_ 18 PLVHSIT-----NNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVI 92 (269)
T ss_dssp CEEEEEC-----CTTTHHHHHHHHHHHTCEEECCCCTTTHHHHHHHSSEEEEECTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEec-----chhHHHHHHHHHHHcCCCccccCCHHHHHHHHHhccceEEecCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 3455455 77777788888888887664 33333 7999999988776655667777788888899999
Q ss_pred EE--ccccCCc
Q 012929 130 VA--GCVPQGS 138 (453)
Q Consensus 130 vg--Gc~a~~~ 138 (453)
+- |+.++..
T Consensus 93 LDPVgvgas~~ 103 (269)
T d1ekqa_ 93 LDPVGAGATPF 103 (269)
T ss_dssp EECTTBTTBHH
T ss_pred ECCcCCCCchh
Confidence 86 6665544
No 41
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}
Probab=32.80 E-value=35 Score=29.54 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCC-cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE-ecc-cCCCCHhH
Q 012929 332 FRTVVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS-QFY-PRPGIQFL 393 (453)
Q Consensus 332 ~~~~i~~lr~~~pg-i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~-~~s-p~pGT~~~ 393 (453)
+.+.++.+++. | -.+-+++..|+| +.+++.+.++.+.+.+.|.+-+. +|| |.-.-|.-
T Consensus 4 i~~~f~~~~~~--~~~~li~y~~aG~P--~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvI 64 (261)
T d1rd5a_ 4 VSDTMAALMAK--GKTAFIPYITAGDP--DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPII 64 (261)
T ss_dssp HHHHHHHHHHT--TCCEEEEEEETTSS--CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHH
T ss_pred HHHHHHHHHHc--CCCeEEEEEeCcCC--CHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcce
Confidence 45778888887 5 678899999999 58888899999999999988884 566 44444444
No 42
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=32.12 E-value=88 Score=22.88 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CC-EEEEccccCCchh
Q 012929 75 SEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP-LVVAGCVPQGSRD 140 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~-vVvgGc~a~~~~e 140 (453)
.+.+...|+..||++... ....|++++.- .. +. -.-.+.++++|+.+ .+ |+++|..-.....
T Consensus 16 ~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~-~m--p~-~~G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~ 91 (123)
T d1dbwa_ 16 RKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDL-RM--PD-MSGVELLRNLGDLKINIPSIVITGHGDVPMAV 91 (123)
T ss_dssp HHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEEC-CS--TT-SCHHHHHHHHHHTTCCCCEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHhhcCCcEEEEec-cC--cc-ccchHHHHHHHhcCCCCeEEEEEeeCCHHHHH
Confidence 456777888889876432 34578888853 22 21 12345556565543 34 5567654222221
Q ss_pred h-hcCCcc-EEEcCCChhHHHHHHHHHh
Q 012929 141 L-KELEGV-SIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 141 ~-~~~~~d-~vvG~~~~~~l~~~l~~~~ 166 (453)
. .+..++ .+.-+-....+.+.++...
T Consensus 92 ~a~~~Ga~~yl~KP~~~~~L~~~i~~a~ 119 (123)
T d1dbwa_ 92 EAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (123)
T ss_dssp HHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 1 133444 5666767677777776543
No 43
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.83 E-value=89 Score=22.82 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CC-EEEEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP-LVVAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~-vVvgGc~a~ 136 (453)
|..-.+.+...|+..||++..- ....|+|++.- ..-.. .-.+.++++|+.+ .+ |+++|..-.
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~-~mP~~---~G~el~~~ir~~~~~~piI~lt~~~~~ 85 (121)
T d1ys7a2 10 DSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDI-NMPVL---DGVSVVTALRAMDNDVPVCVLSARSSV 85 (121)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEES-SCSSS---CHHHHHHHHHHTTCCCCEEEEECCCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEe-eccCc---ccHHHHHHHHhcCCCCEEEEEEeeCCH
Confidence 3344567888888899987432 35679999963 22111 2345555555543 44 556775433
Q ss_pred Cchh-hhcCCcc-EEEcCCChhHHHHHHHHHh
Q 012929 137 GSRD-LKELEGV-SIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 137 ~~~e-~~~~~~d-~vvG~~~~~~l~~~l~~~~ 166 (453)
.... ..+..++ .+.-+-....+...++..+
T Consensus 86 ~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 117 (121)
T d1ys7a2 86 DDRVAGLEAGADDYLVKPFVLAELVARVKALL 117 (121)
T ss_dssp TCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 2222 1233344 5777777777777666543
No 44
>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Probab=31.59 E-value=1.3e+02 Score=24.64 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHh
Q 012929 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (453)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (453)
-++++++++++.+.++|++.+.+-- |.+. + .+.++++.+.+. ...++++..-..-...+.+ .+.++..
T Consensus 15 ~~~~~~~~~~~~~~~~Gf~~~Kikv------g~~~--D-i~~i~~ir~~~g--~~~~l~vDaN~~~~~~~a~-~~~~l~~ 82 (242)
T d1sjda1 15 DTIPQLLDVVGGYLDEGYVRIKLKI------EPGW--D-VEPVRAVRERFG--DDVLLQVDANTAYTLGDAP-QLARLDP 82 (242)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEC------BTTB--S-HHHHHHHHHHHC--TTSEEEEECTTCCCGGGHH-HHHTTGG
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC------Cchh--H-HHHHHHHHHHhC--CCeeEeeccccccchhhhh-HHhhhhh
Confidence 4799999999999999999988742 1211 2 466777777664 4567887733233333332 3443222
Q ss_pred CCCCceeeecccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCc-EEEEEEEEeCCCCCHHHHHHHH
Q 012929 301 HPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTV 368 (453)
Q Consensus 301 ~~~~~~~l~iglESgs~~vLk~m~R~-----------~t~e~~~~~i~~lr~~~pgi-~v~~~~IvG~PgET~ed~~~tl 368 (453)
....++.=|+...+...++.+++. ++..++.+.++ .. .+ .+..|+ +.-| ..-.+.+..
T Consensus 83 --~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~---~~--~~d~~~~d~--~~~G-Git~~~~i~ 152 (242)
T d1sjda1 83 --FGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIK---LG--AVQIVNIKP--GRVG-GYLEARRVH 152 (242)
T ss_dssp --GCCSEEECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHH---TT--CCSEEEECT--TTTT-SHHHHHHHH
T ss_pred --hhhHHHHhhhhhhhHHHHHHHHhccCcccccccccccchhhhhhhh---cC--ccCEEEecc--ccCc-cchhhhHHH
Confidence 234678888877777777766653 23344333332 22 11 122221 1111 356777788
Q ss_pred HHHHhcCCC
Q 012929 369 NLIKEYKFP 377 (453)
Q Consensus 369 ~~i~~l~~~ 377 (453)
++++..++.
T Consensus 153 ~~A~~~~i~ 161 (242)
T d1sjda1 153 DVCAAHGIP 161 (242)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHCCCE
Confidence 888887765
No 45
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.31 E-value=39 Score=29.20 Aligned_cols=68 Identities=26% Similarity=0.233 Sum_probs=49.3
Q ss_pred cChhHHHHHHHHHHHcCCeee--CCCCC-------CcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE--ccccCC
Q 012929 70 HNQSDSEYMAGQLSAFGYALT--DNSEE-------ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQG 137 (453)
Q Consensus 70 ~N~~dse~~~~~L~~~g~~~~--~~~~~-------AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg--Gc~a~~ 137 (453)
-|.+-....+..|.+.|-..+ +.+++ ||.++||.=|.+....+.+...++.+++.+++||+- |+.++.
T Consensus 22 TN~V~~~~~An~~La~GasP~Ma~~~~E~~e~~~~a~al~iN~Gtl~~~~~~~m~~a~~~A~~~~~PvVLDPVgvgas~ 100 (264)
T d1v8aa_ 22 TNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATK 100 (264)
T ss_dssp CCTTTHHHHHHHHHHHTCEEEECCCTTTHHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBH
T ss_pred echhhHhhHHHHHHHcCCCchhcCCHHHHHHHHHhcCceEeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCcccCcch
Confidence 367777778899988887654 33433 689999998877665666777778888889999975 444443
No 46
>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=30.03 E-value=99 Score=24.99 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
++|++.++++.+++.|++.+.+= . |.+ .-.+.++++.+.++ ...+++. .|-..-.+....+.+.++.
T Consensus 16 tpe~~~~~a~~~~~~G~~~~KiK---v---g~~---~d~~~i~~ir~~~~---d~~l~vD-aN~~~s~~~A~~~~~~l~~ 82 (208)
T d1jpdx1 16 TPDQMANSASTLWQAGAKLLKVK---L---DNH---LISERMVAIRTAVP---DATLIVD-ANESWRAEGLAARCQLLAD 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE---C---CSS---CHHHHHHHHHHHCT---TSEEEEE-CTTCCCSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE---C---CCC---cHHHHHHHHHHhcc---ccEEEEe-cccccchhHHHHHHHHHHh
Confidence 79999999999999999998873 1 222 23667888877774 3567776 3322212222223333332
Q ss_pred CCCceeeecccCCCCHHHHHhhcCC
Q 012929 302 PCVYSFLHVPVQSGSDAVLSAMNRE 326 (453)
Q Consensus 302 ~~~~~~l~iglESgs~~vLk~m~R~ 326 (453)
....++.=|+..-+...++..+++
T Consensus 83 -~~l~~iEeP~~~~d~~~~~~l~~~ 106 (208)
T d1jpdx1 83 -LGVAMLEQPLPAQDDAALENFIHP 106 (208)
T ss_dssp -TTCCEEECCSCTTSCGGGGSSCCS
T ss_pred -ccccccCccCCccCHHHHHhhhcc
Confidence 223577777777776666666553
No 47
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.96 E-value=9.6 Score=21.14 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.6
Q ss_pred CCCcccccccc
Q 012929 203 LGACTYCKTKH 213 (453)
Q Consensus 203 ~~~CsFC~~~~ 213 (453)
|+.|.||.+..
T Consensus 2 py~cqyc~yrs 12 (30)
T d1klra_ 2 TYQCQYCEFRS 12 (30)
T ss_dssp CCCCSSSSCCC
T ss_pred Ccccccccccc
Confidence 78999997643
No 48
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=29.64 E-value=46 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=18.0
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeee
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT 90 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~ 90 (453)
|||.|+-.| +=.-.++..|.+.|++++
T Consensus 1 MkI~IiGaG-----~iG~~~a~~L~~~G~~V~ 27 (167)
T d1ks9a2 1 MKITVLGCG-----ALGQLWLTALCKQGHEVQ 27 (167)
T ss_dssp CEEEEECCS-----HHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECcC-----HHHHHHHHHHHHCCCceE
Confidence 456665443 234568888888998875
No 49
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}
Probab=29.56 E-value=94 Score=26.50 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
+++.+++-++.+.+.|+..|.|.| .+ |.-.+..+.++++.+.+.++ ....+.+..-+-..+. +......+.
T Consensus 159 ~~~~~~~~~~~~~~~G~~~i~l~D-T~---G~~~P~~v~~li~~l~~~~~--~~i~i~~H~Hnd~Gla--~AN~laA~~- 229 (303)
T d1rqba2 159 TVEGYVKLAGQLLDMGADSIALKD-MA---ALLKPQPAYDIIKAIKDTYG--QKTQINLHCHSTTGVT--EVSLMKAIE- 229 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEE-TT---CCCCHHHHHHHHHHHHHHHC--TTCCEEEEEBCTTSCH--HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhcCCcEEeecC-cc---chhhhHHHHHHHHHHHhhcC--CcccceeccCchHHHH--HHHHHHHHH-
Confidence 689999999999999999999876 33 33334577889988887653 2334555533322221 111222222
Q ss_pred CCCceeeecccCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 302 ~~~~~~l~iglESgs~~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
.++.+++-.+ .-|++....-...+++..+++. |+. +|-..+.+.+.-+++++++.
T Consensus 230 -aG~~~id~ti--------~GlG~~~GN~~te~lv~~L~~~--g~~---------t~idl~~L~~i~~~~~~ir~ 284 (303)
T d1rqba2 230 -AGVDVVDTAI--------SSMSLGPGHNPTESVAEMLEGT--GYT---------TNLDYDRLHKIRDHFKAIRP 284 (303)
T ss_dssp -TTCSEEEEBC--------GGGCSTTSBCBHHHHHHHTTTS--SEE---------CCCCHHHHHHHHHHHHHHGG
T ss_pred -cCCCEEEECC--------ccCCCCCCCccHHHHHHHHHhc--CCC---------CCCCHHHHHHHHHHHHHHHH
Confidence 3556655443 3444433222333445555555 533 23456666677777766643
No 50
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.15 E-value=98 Score=22.49 Aligned_cols=89 Identities=8% Similarity=0.085 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CC-EEEEccccCCc
Q 012929 73 SDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP-LVVAGCVPQGS 138 (453)
Q Consensus 73 ~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~-vVvgGc~a~~~ 138 (453)
.=.+.+...|...||++..- ....|+|++.- ..-.. ...+.++++|+.+ .+ |+++|..-...
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~-~mp~~---~g~~~~~~lr~~~~~~piI~lt~~~~~~~ 87 (122)
T d1kgsa2 12 DLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDI-MLPVH---DGWEILKSMRESGVNTPVLMLTALSDVEY 87 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEES-CCSSS---CHHHHHHHHHHTTCCCCEEEEESSCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEcchHHHHHHHHhhCcccccccc-ccccc---hhHHHHHHHHhcCCCCcEEEEcCCCCHHH
Confidence 34566778888889987532 35679999853 22221 2344555555443 34 44566432211
Q ss_pred hhh-hcCCcc-EEEcCCChhHHHHHHHHH
Q 012929 139 RDL-KELEGV-SIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 139 ~e~-~~~~~d-~vvG~~~~~~l~~~l~~~ 165 (453)
... .+...+ .+.-+-....+...++..
T Consensus 88 ~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~ 116 (122)
T d1kgsa2 88 RVKGLNMGADDYLPKPFDLRELIARVRAL 116 (122)
T ss_dssp HHHTCCCCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCceeecCCCCHHHHHHHHHHH
Confidence 111 133344 577776666666655544
No 51
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent tetrahydromethanopterin reductase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=29.12 E-value=1.7e+02 Score=25.08 Aligned_cols=104 Identities=12% Similarity=0.241 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEec--CCc-----ChhHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--NPP-----FILEHLKE 294 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~--~p~-----~i~~~l~~ 294 (453)
++.++++.++..-+.|+..+|+.+ +.+.+ +...++-.+.... .++++++. .+. .+-+....
T Consensus 14 ~~~~~~~~a~~Ae~lGf~~~w~~e-h~~~~------~p~~~~a~~a~~T-----~~i~lgt~v~~~~~~~P~~~A~~~at 81 (347)
T d1ezwa_ 14 KPTKIAHLIKVAEDNGFEYAWICD-HYNNY------SYMGVLTLAAVIT-----SKIKLGPGITNPYTRHPLITASNIAT 81 (347)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECC-CTTSC------CHHHHHHHHHHTC-----SSSEEEESSBCSSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-cCCCC------CHHHHHHHHHHHC-----CceEEEEEEecCcCCChHHHHHHHHH
Confidence 578888888888888999999864 33322 3456777776643 45666642 222 22222222
Q ss_pred HHHHHhCCCCceeeecccCCCCHHHHHhhcCCC----------------CHHHHHHHHHHHHHh
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----------------TLSDFRTVVDTLIEL 342 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs~~vLk~m~R~~----------------t~e~~~~~i~~lr~~ 342 (453)
|..+ ..+ ++.+|+=+|.......++-+. ..+.+.+.++.+++.
T Consensus 82 ld~l---s~G--R~~lGvg~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~il~~l 140 (347)
T d1ezwa_ 82 LDWI---SGG--RAIIGMGPGDKATFDKMGLPFPCKIPIWNPEAEDEVGPATAIREVKEVIYQY 140 (347)
T ss_dssp HHHH---TTS--CBCEEECCCCHHHHHHHTCCSSCCCCTBCTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---ccC--ceEEEEecCchHHHHhhhccccccccccchhhhhhhhhHHhHHHHHHHHHHH
Confidence 2222 233 678999999988776664322 245666777777663
No 52
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=29.10 E-value=1e+02 Score=22.60 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CC-EEEEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP-LVVAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~-vVvgGc~a~ 136 (453)
|..-.+.+...|+..||++... ....|+|++.-..-.. ...+.++++++.+ .+ ++++|..-.
T Consensus 11 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~mp~~----~G~~~~~~i~~~~~~~~ii~lt~~~~~ 86 (128)
T d1yioa2 11 DMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGM----SGIELQEQLTAISDGIPIVFITAHGDI 86 (128)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSS----CHHHHHHHHHHTTCCCCEEEEESCTTS
T ss_pred CHHHHHHHHHHHHHcCCCccccccHHHHHHHHHhcCCCEeehhhhcccc----hhHHHHHHHHhhCCCCeEEEEEEECCH
Confidence 4445567888888999987532 4668999996533211 2344455555543 33 556776433
Q ss_pred Cchhh-hcCCc-cEEEcCCChhHHHHHHHHHh
Q 012929 137 GSRDL-KELEG-VSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 137 ~~~e~-~~~~~-d~vvG~~~~~~l~~~l~~~~ 166 (453)
..... ....+ |.+.-+-....+...++..+
T Consensus 87 ~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 118 (128)
T d1yioa2 87 PMTVRAMKAGAIEFLPKPFEEQALLDAIEQGL 118 (128)
T ss_dssp CCCHHHHHTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 33321 23333 45776766667776666543
No 53
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.97 E-value=40 Score=28.45 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCeee-----CC--------CCCCcEEEEeecccc-cchHHHHHHHHHHHhhCCCCEEEEccccCC
Q 012929 77 YMAGQLSAFGYALT-----DN--------SEEADIWLINTCTVK-SPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137 (453)
Q Consensus 77 ~~~~~L~~~g~~~~-----~~--------~~~AD~viinTCtv~-~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~ 137 (453)
.++..|.+.||++. ++ ..++|++++++++-. ....+. .+.+.++-+.|.-+| |+|+..
T Consensus 31 ~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvli~~~~~~~~~l~~~q-~~al~~~v~~G~G~V--glH~a~ 102 (240)
T d1t0ba_ 31 VIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKDEV-VERVHRRVLEGMGLI--VLHSGH 102 (240)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCHHH-HHHHHHHHHTTCEEE--EEGGGG
T ss_pred HHHHHhhcCCceEEEEEecCccccCCHHHHhcCCEEEEeCCCCCCcCCHHH-HHHHHHHHHcCCCEE--EEecCc
Confidence 67788999999873 11 257899998764422 122233 333444546676554 455543
No 54
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.96 E-value=2.3 Score=23.68 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=10.8
Q ss_pred CCCccccccccccC
Q 012929 203 LGACTYCKTKHARG 216 (453)
Q Consensus 203 ~~~CsFC~~~~~rg 216 (453)
||.|.+|.-.+++.
T Consensus 3 Pf~C~~CgrkFArs 16 (28)
T d1a1ia3 3 PFACDICGRKFARS 16 (28)
T ss_dssp CEECTTTCCEESSH
T ss_pred Ccccchhhhhhhcc
Confidence 78899998766553
No 55
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.58 E-value=82 Score=24.93 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHcCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC-CCE-EEEccccCC
Q 012929 72 QSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPL-VVAGCVPQG 137 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~------------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-~~v-VvgGc~a~~ 137 (453)
..-.+.|...|.+.||+++.. ....|+|++.-+.=.. .-.+.++++|+.. .+| +++|..-..
T Consensus 13 ~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~----dG~e~~~~ir~~~~~pIi~lTa~~~~~ 88 (190)
T d1s8na_ 13 ALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRR----DGIDAASEIASKRIAPIVVLTAFSQRD 88 (190)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSS----CHHHHHHHHHHTTCSCEEEEEEGGGHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhcCCCCEEEEeccccCc----chHHHHHHHHhcCCCCEEEEeCCCCHH
Confidence 344567888899999987532 2457999997532221 2355566665543 454 455543221
Q ss_pred chhhh--cCCc-cEEEcCCChhHHHHHHHHHhc
Q 012929 138 SRDLK--ELEG-VSIVGVQQIDRVVEVVEETLK 167 (453)
Q Consensus 138 ~~e~~--~~~~-d~vvG~~~~~~l~~~l~~~~~ 167 (453)
.- .. +..+ |++.-+-....+...+.....
T Consensus 89 ~~-~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~ 120 (190)
T d1s8na_ 89 LV-ERARDAGAMAYLVKPFSISDLIPAIELAVS 120 (190)
T ss_dssp HH-HTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHcCCCEeccCCCCHHHHHHHHHHHHH
Confidence 11 12 2333 457777777777776665443
No 56
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=26.97 E-value=1.1e+02 Score=22.76 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhh----CCCCEEE-Ecccc
Q 012929 72 QSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS----AKKPLVV-AGCVP 135 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~----~~~~vVv-gGc~a 135 (453)
....+.+...|+..||++..- ...+|+|+++. ..-... -.+.++.+|. .+.+||+ +|..-
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~D~-~~p~~~---G~~~~~~ir~~~~~~~~piI~lt~~~~ 86 (139)
T d1w25a1 11 EANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDV-MMPGMD---GFTVCRKLKDDPTTRHIPVVLITALDG 86 (139)
T ss_dssp TTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES-CCSSSC---HHHHHHHHHHSTTTTTSCEEEEECSSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEccchhhhhhhhcccceeeeeec-cccCCC---chHHHHHhhhcccccCCCEEEEEcCCC
Confidence 345678889999999987432 24579999963 322221 2333444433 2345554 44332
Q ss_pred CCchh-hhcCCc-cEEEcCCChhHHHHHHHHH
Q 012929 136 QGSRD-LKELEG-VSIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 136 ~~~~e-~~~~~~-d~vvG~~~~~~l~~~l~~~ 165 (453)
..... ..+..+ |.+.-+-....+...++..
T Consensus 87 ~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 118 (139)
T d1w25a1 87 RGDRIQGLESGASDFLTKPIDDVMLFARVRSL 118 (139)
T ss_dssp HHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 22111 112334 4577776666666555543
No 57
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=26.37 E-value=1e+02 Score=25.72 Aligned_cols=56 Identities=7% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccCCCCHh
Q 012929 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392 (453)
Q Consensus 330 e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~~ 392 (453)
..+......+.+. +..+...++.|.| ++.+.++-+.+.+..++.+.+|.-.+|.-+
T Consensus 152 ~~~~~~~~~l~~~--~~~~~~~~~~~~P-----~~~~~l~~l~~~g~~~vvv~P~fl~~G~H~ 207 (257)
T d1qgoa_ 152 AAYACLDHMMTAQ--RFPARVGAVESYP-----EVDILIDSLRDEGVTGVHLMPLMLVAGDHA 207 (257)
T ss_dssp HHHHHHHHHHHHH--TCSEEEEETTSSS-----CHHHHHHHHHHHTCCEEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHHhc--CCCeEEEEEecCC-----CHHHHHHHHHhcCCCEEEEEehHHhccchh
Confidence 4566667777777 4444444444444 466778888888888999999999999533
No 58
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.93 E-value=75 Score=28.42 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCCCCccccccccccCccccCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCC----CCCc--C-CCHHHHH
Q 012929 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAY----GRDI--G-VNLPILL 263 (453)
Q Consensus 192 ~~~~i~isrGC~~~CsFC~~~~~rg~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~-d~~~y----g~d~--~-~~l~~Ll 263 (453)
.+.++-+..|-... =.++.+.|-+ ..+++.+++|++.+.+.|++.|.|.+- -.... |..- . .-+..-+
T Consensus 41 LI~PiFV~eg~~~~---e~I~SMPGi~-R~Sid~L~~eie~~~~lGI~av~LF~vpi~~~~Kd~~gseA~n~~~lv~rAI 116 (340)
T d1h7na_ 41 LIFPLFISDNPDDF---TEIDSLPNIN-RIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGI 116 (340)
T ss_dssp EEEEEEEESSTTCE---EECTTSTTCE-EECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHH
T ss_pred ceeeeEEeeCCCCc---eecCCCCCCc-ccCHHHHHHHHHHHHHcCCCeeecCCCCCCCCCCCCcchhhhhhccHHHHHH
Confidence 44455555554322 1233444434 459999999999999999999998862 11111 1110 1 1245677
Q ss_pred HHHHHhCC
Q 012929 264 NAIVAELP 271 (453)
Q Consensus 264 ~~l~~~i~ 271 (453)
+.|.+.++
T Consensus 117 r~iK~~fp 124 (340)
T d1h7na_ 117 KFIREYFP 124 (340)
T ss_dssp HHHHHHCT
T ss_pred HHHHhhhc
Confidence 87877765
No 59
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi [TaxId: 669]}
Probab=25.75 E-value=1.9e+02 Score=24.65 Aligned_cols=109 Identities=8% Similarity=0.012 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEe--c-----CCcChhHHHHH
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--T-----NPPFILEHLKE 294 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~--~-----~p~~i~~~l~~ 294 (453)
..+++++.++..-+.|+..+|+.+-.+..++. ..+-.-++-.+.... .+|++++ + +|-.+.+...-
T Consensus 20 ~~~~~~~~a~~Ae~~G~d~~w~~ehh~~~~~~--~~~p~~~la~~a~~T-----~~I~lg~~v~~~~~~~P~~~A~~~at 92 (320)
T d1lucb_ 20 VIEEMLDTAHYVDQLKFDTLAVYENHFSNNGV--VGAPLTVAGFLLGMT-----KNAKVASLNHVITTHHPVRVAEEACL 92 (320)
T ss_dssp HHHHHHHHHHHHHTSSCCEEEECCCCSSSSCS--CSCHHHHHHHHHHHC-----SSSEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecccCCCCcc--cCCHHHHHHHHHHhc-----ccceeeeeeccCccCChHHHHHHHHH
Confidence 45667777776667799999987655554432 234455666776643 2445542 1 12222232222
Q ss_pred HHHHHhCCCCceeeecccCCCC-HHHHHhhcCCC--CHHHHHHHHHHHHHh
Q 012929 295 IAEVLRHPCVYSFLHVPVQSGS-DAVLSAMNREY--TLSDFRTVVDTLIEL 342 (453)
Q Consensus 295 l~~l~~~~~~~~~l~iglESgs-~~vLk~m~R~~--t~e~~~~~i~~lr~~ 342 (453)
|.. ..++ ++.+|+=+|. +..++.++..+ ..+.+.+.++.+++.
T Consensus 93 ld~---ls~G--R~~lG~g~G~~~~~~~~~g~~~~~~~~~~~E~l~ii~~~ 138 (320)
T d1lucb_ 93 LDQ---MSEG--RFAFGFSDCEKSADMRFFNRPTDSQFQLFSECHKIINDA 138 (320)
T ss_dssp HHH---HTTS--CEEEEEECCCCHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHH---hcCC--CceeeeeccccccccccccccccccccccHHHHHHHHHh
Confidence 222 2233 6677777766 56678888765 345566677776664
No 60
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=25.66 E-value=1e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=21.1
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCee
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~ 89 (453)
..|||.++|= -+......++..|++.|+.+
T Consensus 4 ~~V~i~~~g~-~~~~~~~~l~~~Lr~~gi~v 33 (97)
T d1wu7a1 4 KSVYICRVGK-INSSIMNEYSRKLRERGMNV 33 (97)
T ss_dssp CEEEEEEESS-CCHHHHHHHHHHHHTTTCEE
T ss_pred ceEEEEEeCH-HHHHHHHHHHHHHHHCCCEE
Confidence 4688888884 33455666788888888764
No 61
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.47 E-value=1.2e+02 Score=22.91 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=51.1
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeC-------------------CCCCCcEEEEeecccccchHHHHHHHHH
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------------------NSEEADIWLINTCTVKSPSQSAMDTLIA 119 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~-------------------~~~~AD~viinTCtv~~~a~~~~~~~i~ 119 (453)
++|+|+-..=.. ..-+-.+...|.+.||++.. -++..|+++| ++.+ +.+.++++
T Consensus 20 ksIAVVGaS~~~-~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i----~vp~--~~~~~~~~ 92 (139)
T d2d59a1 20 KKIALVGASPKP-ERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL----FVKP--KLTMEYVE 92 (139)
T ss_dssp CEEEEETCCSCT-TSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEE----CSCH--HHHHHHHH
T ss_pred CeEEEEeecCCC-CCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEE----EeCH--HHHHHHHH
Confidence 456665433222 33466777778889998743 2567888887 2222 35677778
Q ss_pred HHhhCCCCEEEEccccCCchhhh---cCCccEEEcCCC
Q 012929 120 KCKSAKKPLVVAGCVPQGSRDLK---ELEGVSIVGVQQ 154 (453)
Q Consensus 120 ~~~~~~~~vVvgGc~a~~~~e~~---~~~~d~vvG~~~ 154 (453)
++.+.|.+.++-...+.. ++.. +-.+..++|..-
T Consensus 93 e~~~~g~k~v~~~~G~~~-ee~~~~a~~~gi~vig~~C 129 (139)
T d2d59a1 93 QAIKKGAKVVWFQYNTYN-REASKKADEAGLIIVANRC 129 (139)
T ss_dssp HHHHHTCSEEEECTTCCC-HHHHHHHHHTTCEEEESCC
T ss_pred HHHHhCCCEEEEeccccC-HHHHHHHHHCCCEEEcCCc
Confidence 777778887765544332 2221 112345777654
No 62
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=25.00 E-value=1.3e+02 Score=22.37 Aligned_cols=91 Identities=8% Similarity=0.080 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhC--CCC-EEEEccccCC
Q 012929 72 QSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKP-LVVAGCVPQG 137 (453)
Q Consensus 72 ~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~--~~~-vVvgGc~a~~ 137 (453)
..-.+.+...|...||++..- ....|+|++.-. .-.. .-.+.++++|+. +.+ |+++|-.-..
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD~~-mp~~---~G~e~~~~lr~~~~~~piI~lT~~~~~~ 85 (137)
T d1ny5a1 10 KVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLL-LPDV---NGLEILKWIKERSPETEVIVITGHGTIK 85 (137)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESB-CSSS---BHHHHHHHHHHHCTTSEEEEEEETTCHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhccccccchHHHh-hhhh---hHHHHHHHHHHhCCCCCEEEEECCCCHH
Confidence 445567888888889987532 356799999632 2221 124455555543 344 5567642111
Q ss_pred chh-hhcCCc-cEEEcCCChhHHHHHHHHHh
Q 012929 138 SRD-LKELEG-VSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 138 ~~e-~~~~~~-d~vvG~~~~~~l~~~l~~~~ 166 (453)
... .-+..+ |.+.-+-....+...+....
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (137)
T ss_dssp HHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 113334 45776666667776665543
No 63
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=24.94 E-value=1.9e+02 Score=24.36 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC--------------CcCCC---HHHHHHHHHHhCCCCCCceEEEEe
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--------------DIGVN---LPILLNAIVAELPPDGSTMLRIGM 282 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~--------------d~~~~---l~~Ll~~l~~~i~~~~~~~ir~~~ 282 (453)
..+||+++++++.++++|++.+.|--.+....+. ..... -.+.++++.+.+. ....+.+.
T Consensus 24 ~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG--~~~~l~vD- 100 (278)
T d2gl5a1 24 LVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMG--DDADIIVE- 100 (278)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHC--SSSEEEEE-
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhc--cccceeec-
Confidence 4589999999999999999999983211111100 00001 1345566655553 34566665
Q ss_pred cCCc-ChhHHHHHHHHHHhCCCCceeeecccCCCCHHHHHhhcC
Q 012929 283 TNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325 (453)
Q Consensus 283 ~~p~-~i~~~l~~l~~l~~~~~~~~~l~iglESgs~~vLk~m~R 325 (453)
.|.. ...+.+ .+.+.+.. ....++.=|+..-+-+.++.+++
T Consensus 101 an~~~~~~~Ai-~~~~~L~~-~~l~wiEePi~~~d~~~~~~L~~ 142 (278)
T d2gl5a1 101 IHSLLGTNSAI-QFAKAIEK-YRIFLYEEPIHPLNSDNMQKVSR 142 (278)
T ss_dssp CTTCSCHHHHH-HHHHHHGG-GCEEEEECSSCSSCHHHHHHHHH
T ss_pred ccccccchhhH-HHHHHhcc-cccceecccccccchhhhhhhcc
Confidence 3332 233222 23333332 23467888887777777766654
No 64
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}
Probab=24.48 E-value=1.8e+02 Score=24.42 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=36.2
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCC
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p 285 (453)
...++++.+++.++++++.|..-|-+- .+.-..+....+..++..+.+. ....+.+.+.++
T Consensus 19 ~~~~d~~~~~~~A~~m~~~GAdiIDIg---~g~~~~~e~e~~~~vi~~l~~~----~~vpiSIDT~~~ 79 (262)
T d1f6ya_ 19 IQERDPAPVQEWARRQEEGGARALDLN---VGPAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNI 79 (262)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCSEEEEB---CC----CHHHHHHHHHHHHHTT----CCSEEEEECSCH
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEeC---CCCCCCCHHHHHHHHHHHHHHh----hcCCccccCCcc
Confidence 567899999999999999999877652 2221111112334444444332 235667765554
No 65
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.11 E-value=1.2e+02 Score=21.84 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC-CC-EEEEccccCCch
Q 012929 73 SDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KP-LVVAGCVPQGSR 139 (453)
Q Consensus 73 ~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-~~-vVvgGc~a~~~~ 139 (453)
.-.+.+...|+..||++..- ....|+|++.-.- +- ..-.+.++++|+.. .+ |+++|..-....
T Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~~m---P~-~~G~e~~~~ir~~~~~piI~lt~~~~~~~~ 86 (119)
T d1zh2a1 11 AIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL---PD-GDGIEFIRDLRQWSAVPVIVLSARSEESDK 86 (119)
T ss_dssp HHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEE---TT-EEHHHHHHHHHTTCCCCEEEEESCCSHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEecccc---CC-CCCchHHHHHHhccCCcEEEEeccCCHHHH
Confidence 34566777888888876432 2356888885422 21 11244455555432 34 445554322111
Q ss_pred hh-hcCCcc-EEEcCCChhHHHHHHHHHh
Q 012929 140 DL-KELEGV-SIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 140 e~-~~~~~d-~vvG~~~~~~l~~~l~~~~ 166 (453)
.. .+..++ .+.-+-....+...++..+
T Consensus 87 ~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 115 (119)
T d1zh2a1 87 IAALDAGADDYLSKPFGIGELQARLRVAL 115 (119)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 11 123344 5666666666666665544
No 66
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=23.77 E-value=68 Score=22.79 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=14.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEE
Q 012929 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (453)
Q Consensus 94 ~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vV 129 (453)
.++|+||++ -++..... .+.++++.|.+|+
T Consensus 66 ~~~d~vV~S-~AI~~~np-----el~~A~~~gipii 95 (96)
T d1p3da1 66 EGASVVVVS-SAIKDDNP-----ELVTSKQKRIPVI 95 (96)
T ss_dssp TTCSEEEEC-TTSCTTCH-----HHHHHHHTTCCEE
T ss_pred CCCCEEEEC-CCcCCCCH-----HHHHHHHcCCCEE
Confidence 456777773 34433211 1234555666654
No 67
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.66 E-value=1.2e+02 Score=21.79 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC--CC-EEEEccccC
Q 012929 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP-LVVAGCVPQ 136 (453)
Q Consensus 71 N~~dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~--~~-vVvgGc~a~ 136 (453)
|..-.+.+...|+..||++..- ....|+|++.--- +. ..-.+.++++|..+ .+ |+++|....
T Consensus 11 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~m---p~-~~G~~~~~~~r~~~~~~~ii~lt~~~~~ 86 (121)
T d1mvoa_ 11 EESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML---PK-LDGIEVCKQLRQQKLMFPILMLTAKDEE 86 (121)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC---SS-SCHHHHHHHHHHTTCCCCEEEEECTTCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEEecccc---cC-CCCchhhhhhhccCCCCEEEEEEeeCCH
Confidence 4445667888888999987542 3457999986422 21 11244455555443 34 456665444
Q ss_pred Cchhh-hcCCcc-EEEcCCChhHHHHHHHHHh
Q 012929 137 GSRDL-KELEGV-SIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 137 ~~~e~-~~~~~d-~vvG~~~~~~l~~~l~~~~ 166 (453)
..... .+...+ .+.-+-....+...++..+
T Consensus 87 ~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 118 (121)
T d1mvoa_ 87 FDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 (121)
T ss_dssp CCHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 33322 244444 5777767667776666543
No 68
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=23.36 E-value=89 Score=26.05 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc-ChhHHHHHHHH
Q 012929 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAE 297 (453)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~ 297 (453)
..++++++.++++.+++.|++.+.+-- |.+.. .-.+.++++.+.+. ....+.+. .|-. ...+.+ .+.+
T Consensus 12 ~~~s~ee~~~~a~~~~~~Gf~~~Kikv------G~~~~-~di~~v~~vr~~~g--~~~~l~vD-aN~~~~~~~A~-~~~~ 80 (252)
T d1yeya1 12 LGYSDEKLVRLAKEAVADGFRTIKLKV------GANVQ-DDIRRCRLARAAIG--PDIAMAVD-ANQRWDVGPAI-DWMR 80 (252)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEEC------CSCHH-HHHHHHHHHHHHHC--SSSEEEEE-CTTCCCHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC------CCCHH-HHHHHHHHHHHHhC--CCceEeec-cccCcchHHHH-HHHH
Confidence 357889999999999999999998852 22211 11455666666554 44567666 3332 222222 2222
Q ss_pred HHhCCCCceeeecccCCCCHHHHH
Q 012929 298 VLRHPCVYSFLHVPVQSGSDAVLS 321 (453)
Q Consensus 298 l~~~~~~~~~l~iglESgs~~vLk 321 (453)
.+. ...+.++.=|+...+..-+.
T Consensus 81 ~l~-~~~~~~iEeP~~~~d~~~~~ 103 (252)
T d1yeya1 81 QLA-EFDIAWIEEPTSPDDVLGHA 103 (252)
T ss_dssp TTG-GGCCSCEECCSCTTCHHHHH
T ss_pred hhh-hcCceeecCCcchhhHHHHH
Confidence 222 12346777788777765543
No 69
>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.24 E-value=2.1e+02 Score=24.21 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=42.8
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCc
Q 012929 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (453)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~ 286 (453)
.+.++.+.++++++..++.|..-+-+ |.+.-+.+....+..+++.+.... ...+.+.+.+|.
T Consensus 34 ~~~~d~d~~~~~A~~qv~~GA~iLDI---n~~~~~~~e~~~m~~li~~l~~~~----d~PlsIDT~~~~ 95 (260)
T d3bofa1 34 MQKGNEEIVIKEAKTQVEKGAEVLDV---NFGIESQIDVRYVEKIVQTLPYVS----NVPLSLDIQNVD 95 (260)
T ss_dssp HHTTCSHHHHHHHHHHHHTTCSEEEE---ECSSGGGSCHHHHHHHHHHHHHHT----CSCEEEECCCHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCEEEe---ecCCchhhhHHHHHHHHHHHHhcC----CCCccccCCCHH
Confidence 46778899999999999999987665 444444443345666777776543 346777776654
No 70
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Probab=22.88 E-value=69 Score=28.44 Aligned_cols=162 Identities=11% Similarity=0.033 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhH-------HH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HL 292 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~-------~l 292 (453)
.|.+.+.++.++.+.+.|+.+++++|-|-...+......+.++++.+.+... ..+.++ ---..+.+ ..
T Consensus 44 ~r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~----vPi~vG-GGIrsi~di~~~~~~~~ 118 (323)
T d1jvna1 44 VRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVF----VPLTVG-GGIKDIVDVDGTKIPAL 118 (323)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCC----SCEEEE-SSCSCEECTTCCEECHH
T ss_pred ccccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccc----eeEEEe-cCcccHHHhhhccchhh
Confidence 4566788999999999999999999876433332212346778888865431 234333 11111111 01
Q ss_pred HHHHHHHhCCCCceeeecccCCC-CHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCC------------
Q 012929 293 KEIAEVLRHPCVYSFLHVPVQSG-SDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG------------ 358 (453)
Q Consensus 293 ~~l~~l~~~~~~~~~l~iglESg-s~~vLk~m-~R~~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~Pg------------ 358 (453)
+....++. .+...|.+|-... +++.+..+ ++.-+..-+.++.+.+-.. -+.++.|+.-+..+
T Consensus 119 e~A~~ll~--~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq--~IvvsiD~k~~~~~~~~~~~~~~~~~ 194 (323)
T d1jvna1 119 EVASLYFR--SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQ--AVVISVDPKRVYVNSQADTKNKVFET 194 (323)
T ss_dssp HHHHHHHH--HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGG--GEEEEECEEEEEESSGGGCSSCCEEC
T ss_pred HHHHHHHH--cCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCc--eEEEEEEEEecccccccccccccccc
Confidence 11223333 2345666665443 34444433 4444455556665555444 58888888765322
Q ss_pred ----------------------CCHHHHHHHHHHHHhcCCCeEEEEecccCCCCH
Q 012929 359 ----------------------ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391 (453)
Q Consensus 359 ----------------------ET~ed~~~tl~~i~~l~~~~i~i~~~sp~pGT~ 391 (453)
.|.-++.+.+..+.++++..+-++.. -+.||-
T Consensus 195 ~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdI-drDGt~ 248 (323)
T d1jvna1 195 EYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCI-DKDGSN 248 (323)
T ss_dssp SSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCG-GGTTTC
T ss_pred ccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEee-cccccc
Confidence 12236778899999999887765443 466663
No 71
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}
Probab=22.83 E-value=1.4e+02 Score=25.01 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHHhC
Q 012929 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (453)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (453)
+++.+.+-++.+.+.|+..|.|.| ++|.-.+..+.++++.+.+.+. ....+.+..-+-..+.-.- ....+.
T Consensus 146 ~~~~~~~~~~~~~~~g~~~I~l~D----T~G~~~P~~v~~~v~~l~~~~~--~~~~i~~H~Hn~~g~a~an--~l~A~~- 216 (289)
T d1nvma2 146 PAEKLAEQGKLMESYGATCIYMAD----SGGAMSMNDIRDRMRAFKAVLK--PETQVGMHAHHNLSLGVAN--SIVAVE- 216 (289)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEC----TTCCCCHHHHHHHHHHHHHHSC--TTSEEEEECBCTTSCHHHH--HHHHHH-
T ss_pred CchhhhHHHHhhccccceeeeecc----hhhcccchhHHHHHHHHHHHhc--ccccceeeechHHHHHHHH--HHHHHH-
Q ss_pred CCCceeeeccc
Q 012929 302 PCVYSFLHVPV 312 (453)
Q Consensus 302 ~~~~~~l~igl 312 (453)
.++.+++-.+
T Consensus 217 -~G~~~id~si 226 (289)
T d1nvma2 217 -EGCDRVDASL 226 (289)
T ss_dssp -TTCCEEEEBG
T ss_pred -hCCcEeeccc
No 72
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=22.82 E-value=41 Score=27.48 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=52.4
Q ss_pred ceEEEEeeCCCcChhHHHHHHHHHHHcCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEEccccCCc
Q 012929 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (453)
Q Consensus 59 ~~~~i~t~GC~~N~~dse~~~~~L~~~g~~~~~~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvgGc~a~~~ 138 (453)
.|+++++|+=.. .+.+.+...| | .|+... ++++ ++.+...++++++.|..+||||-++...
T Consensus 95 ~kiavV~~~~~~--~~~~~~~~ll---~---------~~i~~~---~~~~--~~e~~~~v~~l~~~G~~vVVG~~~~~~~ 155 (186)
T d2pjua1 95 SSIGVVTYQETI--PALVAFQKTF---N---------LRLDQR---SYIT--EEDARGQINELKANGTEAVVGAGLITDL 155 (186)
T ss_dssp SCEEEEEESSCC--HHHHHHHHHH---T---------CCEEEE---EESS--HHHHHHHHHHHHHTTCCEEEESHHHHHH
T ss_pred CCEEEEeCCccc--hHHHHHHHHh---C---------CceEEE---EecC--HHHHHHHHHHHHHCCCCEEECChHHHHH
Confidence 689999887543 3344555555 2 233333 3443 3567888999999999999999876544
Q ss_pred hhhhcCCccEEEcCCChhHHHHHHHHHh
Q 012929 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (453)
Q Consensus 139 ~e~~~~~~d~vvG~~~~~~l~~~l~~~~ 166 (453)
.+...++ .|+=... +.+.+.++++.
T Consensus 156 A~~~Gl~--~vli~S~-eSv~~Ai~~A~ 180 (186)
T d2pjua1 156 AEEAGMT--GIFIYSA-ATVRQAFSDAL 180 (186)
T ss_dssp HHHTTSE--EEESSCH-HHHHHHHHHHH
T ss_pred HHHcCCC--EEEEeCH-HHHHHHHHHHH
Confidence 4322333 3332333 46777776543
No 73
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=22.77 E-value=1.2e+02 Score=26.11 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEecccC
Q 012929 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387 (453)
Q Consensus 327 ~t~e~~~~~i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~~~sp~ 387 (453)
...+.+.+.+..+++.+|...+..-++. +.+.+|+.+..+.+++.+.+.+.++.-+|-
T Consensus 84 ~g~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~d~~~~a~~~~~~gad~lelN~scPn 141 (312)
T d1gtea2 84 KTAAYWCQSVTELKADFPDNIVIASIMC---SYNKNDWMELSRKAEASGADALELNLSCPH 141 (312)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEECC---CSCHHHHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred cchhhhhhhhcccccccccccccccccc---ccchhHHHHHHHHhccCCCCeEeeccCCCC
Confidence 3578888999999988777655544443 568999999999999999999999887775
No 74
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}
Probab=22.74 E-value=60 Score=24.16 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCeeeCC---------CCCCcEEEEeecccccc--hHHHHHHHHHHH--hhCCCCEEEEccccCC
Q 012929 76 EYMAGQLSAFGYALTDN---------SEEADIWLINTCTVKSP--SQSAMDTLIAKC--KSAKKPLVVAGCVPQG 137 (453)
Q Consensus 76 e~~~~~L~~~g~~~~~~---------~~~AD~viinTCtv~~~--a~~~~~~~i~~~--~~~~~~vVvgGc~a~~ 137 (453)
+.++..|.+.|+++... ..++|+++|-|.|.-.. ....+...+..+ +-+|+++.+=|++...
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~~~~~~~gk~~~~f~s~g~~ 91 (138)
T d5nula_ 17 ELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSS
T ss_pred HHHHHHHHhcCCcceecccccccccccccCCeEEEEEeccCCCCCChHHHHHHHHHhCccCCCCcEEEEEEecCC
Confidence 45666677788765321 34689999977665322 122344444443 3356777766666543
No 75
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=22.72 E-value=61 Score=24.98 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHC-CCc
Q 012929 224 ESLVGRVRTVIAD-GVK 239 (453)
Q Consensus 224 e~Iv~Ei~~l~~~-G~~ 239 (453)
++.++.++.+.+. |.+
T Consensus 145 ~~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 145 PEQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHHhCCE
Confidence 4556677777765 655
No 76
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.49 E-value=12 Score=30.54 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=11.6
Q ss_pred EEeCCCCCCCccccccc
Q 012929 196 LPINVGCLGACTYCKTK 212 (453)
Q Consensus 196 i~isrGC~~~CsFC~~~ 212 (453)
|.+| |||++|.=-.+.
T Consensus 51 I~vS-GCpn~C~~~~i~ 66 (179)
T d3c7bb3 51 ISLA-CCANMCGAVHAS 66 (179)
T ss_dssp EEEE-SSTTCCSSGGGC
T ss_pred eEEe-ccCCcCCCcccc
Confidence 4555 999999865543
No 77
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=22.36 E-value=53 Score=24.84 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCeeeC---C-----CCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 77 YMAGQLSAFGYALTD---N-----SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 77 ~~~~~L~~~g~~~~~---~-----~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
.+...+.+.|++++- . .+++|+||= |+.+ +.+.+.++.+.+.++++|+|
T Consensus 15 ~i~~~~~~~~~~l~~~id~~~~~~~~~~DVvID----FS~p--~~~~~~l~~~~~~~~p~ViG 71 (128)
T d1vm6a3 15 EIQKVFSEKGHELVLKVDVNGVEELDSPDVVID----FSSP--EALPKTVDLCKKYRAGLVLG 71 (128)
T ss_dssp HHHHHHHHTTCEEEEEEETTEEEECSCCSEEEE----CSCG--GGHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHhcCCCeEEEEECCCcHHHhccCCEEEE----ecCH--HHHHHHHHHHHhcCCCEEEE
Confidence 356677788888762 1 357898665 5555 34566777777778887763
No 78
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel (Mytilus galloprovincialis) [TaxId: 29158]}
Probab=22.07 E-value=14 Score=21.84 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=6.8
Q ss_pred eCCCcChhHHH
Q 012929 66 FGCSHNQSDSE 76 (453)
Q Consensus 66 ~GC~~N~~dse 76 (453)
|||+ |++.--
T Consensus 2 fGCP-n~yqCH 11 (39)
T d1fjna_ 2 FGCP-NNYQCH 11 (39)
T ss_dssp CSCS-CHHHHH
T ss_pred CCCC-chHHHH
Confidence 6788 777643
No 79
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.35 E-value=1.2e+02 Score=21.78 Aligned_cols=88 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhhCC-CC-EEEEccccCCchh
Q 012929 74 DSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KP-LVVAGCVPQGSRD 140 (453)
Q Consensus 74 dse~~~~~L~~~g~~~~~~-----------~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~-~~-vVvgGc~a~~~~e 140 (453)
=.+.+...|++.||++..- ....|++++.. ..-.. ...+.++..+... .+ |+++|-.-.....
T Consensus 13 ~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~dliilD~-~mp~~---~g~~~~~~~~~~~~~piI~lt~~~~~~~~~ 88 (120)
T d1zgza1 13 TQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDI-NLPDE---NGLMLTRALRERSTVGIILVTGRSDRIDRI 88 (120)
T ss_dssp HHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEES-CCSSS---CHHHHHHHHHTTCCCEEEEEESSCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEeeeh-hhccc---hhHHHHHHHhccCCCeEEEEEccCCHHHHH
Confidence 3467788888899987532 35679999954 22221 2345555554432 33 4456533221111
Q ss_pred h-hcCCcc-EEEcCCChhHHHHHHHHH
Q 012929 141 L-KELEGV-SIVGVQQIDRVVEVVEET 165 (453)
Q Consensus 141 ~-~~~~~d-~vvG~~~~~~l~~~l~~~ 165 (453)
. .+..++ .+.-+-+...+...++..
T Consensus 89 ~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 115 (120)
T d1zgza1 89 VGLEMGADDYVTKPLELRELVVRVKNL 115 (120)
T ss_dssp HHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 1 123444 566666666666555543
No 80
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=21.18 E-value=80 Score=27.13 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCC-cEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE-ecc-cCCCCHhH
Q 012929 332 FRTVVDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS-QFY-PRPGIQFL 393 (453)
Q Consensus 332 ~~~~i~~lr~~~pg-i~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~i~-~~s-p~pGT~~~ 393 (453)
+.++++.+++. + ..+-+++..|+| +.+++.+.++.+.+.+.|.+-+. +|| |.-.-|.-
T Consensus 4 i~~~f~~lk~~--~~~ali~y~t~G~P--~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvI 64 (267)
T d1qopa_ 4 YENLFAQLNDR--REGAFVPFVTLGDP--GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTI 64 (267)
T ss_dssp HHHHHHHHHHT--TCCEEEEEEETTSS--CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHH
T ss_pred HHHHHHHHHHc--CCceEEEEEeCcCC--CHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHH
Confidence 56778888876 4 568899999999 57777788888888889988874 565 44444443
No 81
>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}
Probab=21.17 E-value=2e+02 Score=23.35 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCCceEEEEecCCcChhHHHHHHHHHH
Q 012929 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299 (453)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~ 299 (453)
..++|+++++++.+++.|++.+.+-- |.+. + .+.++++.+.++ ...+++..-..-...+.+ .+..+.
T Consensus 14 ~~~~e~~~~~~~~~~~~Gf~~~Kikv------g~~~--D-~~~v~~ir~~~~---~~~l~vDaN~~~~~~~a~-~~~~l~ 80 (244)
T d1wufa1 14 QQNVETLLQLVNQYVDQGYERVKLKI------APNK--D-IQFVEAVRKSFP---KLSLMADANSAYNREDFL-LLKELD 80 (244)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEEEEEC------BTTB--S-HHHHHHHHTTCT---TSEEEEECTTCCCGGGHH-HHHTTG
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEe------CCcH--H-HHHHHHHHHhcc---chhhhhhhhccccchhhh-hhhccc
Confidence 45899999999999999999988742 2221 2 567888877664 467777632222232221 222221
Q ss_pred hCCCCceeeecccCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHHHhCCCcEEEEEEE-EeCCCCCHHHHHHH
Q 012929 300 RHPCVYSFLHVPVQSGSDAVLSAMNRE-----------YTLSDFRTVVDTLIELVPGMQIATDII-CGFPGETDEDFNQT 367 (453)
Q Consensus 300 ~~~~~~~~l~iglESgs~~vLk~m~R~-----------~t~e~~~~~i~~lr~~~pgi~v~~~~I-vG~PgET~ed~~~t 367 (453)
. ....++.=|+...+-+-++.+++. ++..++.+ .+....-+ .+..|+. +| ......+.
T Consensus 81 ~--~~~~wiEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~---~i~~~a~d-~v~~d~~~~G----Git~~~ki 150 (244)
T d1wufa1 81 Q--YDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQ---AHSIGSCR-AINLKLARVG----GMSSALKI 150 (244)
T ss_dssp G--GTCSEEECCSCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHH---HHHHTCCS-EEEECTGGGT----SHHHHHHH
T ss_pred c--cchhhhcCcccccchhhhhccccccccccccCccccchhhhhh---hccccccc-eeeccccccc----chhhHHHH
Confidence 2 234577778877776667666553 23344433 33332011 1222221 11 34566777
Q ss_pred HHHHHhcCCC
Q 012929 368 VNLIKEYKFP 377 (453)
Q Consensus 368 l~~i~~l~~~ 377 (453)
.+++...++.
T Consensus 151 ~~~a~~~gi~ 160 (244)
T d1wufa1 151 AEYCALNEIL 160 (244)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHcCCE
Confidence 7778777763
No 82
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.14 E-value=2.1e+02 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHhCCCcEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEE
Q 012929 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 380 (453)
Q Consensus 336 i~~lr~~~pgi~v~~~~IvG~PgET~ed~~~tl~~i~~l~~~~i~ 380 (453)
++.+.+..+|-.+...+=+..|.-|+.|..+ ++|..+.+++++.
T Consensus 67 iR~~~e~~~G~~v~i~~dl~~p~ltekD~~d-i~~a~~~~vD~ia 110 (265)
T d1a3xa2 67 ARKSEELYPGRPLAIALDTKGPALSEKDKED-LRFGVKNGVHMVF 110 (265)
T ss_dssp HHHHHHHCCCSCCBCEEECCCCSSCHHHHHH-HHHHHHTTCCEEC
T ss_pred HHHHhhhccCCceeeeccccchhcccchHHH-HHHhhhcccceEe
Confidence 3333344455444444555667778888654 6677777877554
No 83
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.89 E-value=1.5e+02 Score=21.60 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCeeeC-------------------CCCCCcEEEEeecccccchHHHHHHHHHHHhhCCCCEEEE
Q 012929 75 SEYMAGQLSAFGYALTD-------------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (453)
Q Consensus 75 se~~~~~L~~~g~~~~~-------------------~~~~AD~viinTCtv~~~a~~~~~~~i~~~~~~~~~vVvg 131 (453)
+-.+...|.+.||++.. -++..|+++|- + ++ +.+.++++++.+.|.+.+..
T Consensus 17 g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~----v-p~-~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 17 GNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFV----V-PP-KVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEEC----S-CH-HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEE----e-CH-HHHHHHHHHHHhcCCceEEe
Confidence 45667777888887632 25667988882 2 22 45677788888888876543
No 84
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Probab=20.72 E-value=65 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 012929 348 IATDIICGFPGETDEDFNQTVNLIKEYKF 376 (453)
Q Consensus 348 v~~~~IvG~PgET~ed~~~tl~~i~~l~~ 376 (453)
..+.+++.++|..++++++.++++++.++
T Consensus 59 ~~G~Liv~l~G~~~~~i~~ai~~L~~~~v 87 (95)
T d3ceda1 59 TVGFLVLHIPYISSVDFGKFEKELIERQV 87 (95)
T ss_dssp EEEEEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEEEecCCHHHHHHHHHHHHHcCC
Confidence 44778999999999999999999998775
Done!