BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012930
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
+A +D+ SAL P L L++ N + D G+ ++ S + + +L L+NC L+
Sbjct: 42 EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 98
Query: 418 GRGVSQLLDTLSTLRRPPT--SLSIADNNLG 446
G G L TL TL PT L ++DN LG
Sbjct: 99 GAGCGVLSSTLRTL---PTLQELHLSDNLLG 126
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 364 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423
L S L +P L+ L +SDN + D G++ L + R L +L LE C LS
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 161
Query: 424 LLDTLSTLRRPP--TSLSIADNNL 445
L S LR P L++++N++
Sbjct: 162 L---ASVLRAKPDFKELTVSNNDI 182
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417
+A +D+ SAL P L L++ N + D G+ ++ S + + +L L+NC L+
Sbjct: 41 EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLT 97
Query: 418 GRGVSQLLDTLSTLRRPPT--SLSIADNNLG 446
G G L TL TL PT L ++DN LG
Sbjct: 98 GAGCGVLSSTLRTL---PTLQELHLSDNLLG 125
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 364 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423
L S L +P L+ L +SDN + D G++ L + R L +L LE C LS
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEP 160
Query: 424 LLDTLSTLRRPP--TSLSIADNNL 445
L S LR P L++++N++
Sbjct: 161 L---ASVLRAKPDFKELTVSNNDI 181
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418
A+ +DL + +L LD+ N + D GI L P + + R L L+L C+++
Sbjct: 210 ANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASR---LKTLWLWECDITA 266
Query: 419 RGVSQLLDTLSTLRRPPTSLSIADNNLG 446
G L L + LS+A N LG
Sbjct: 267 SGCRDLCRVLQA-KETLKELSLAGNKLG 293
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 421
+D+GSAL P+L L + N + D G+ ++ S C + +L L+NC L+ G
Sbjct: 42 KDIGSALRANPSLTELCLRTNELGDAGVHLVLQGL--QSPTCK-IQKLSLQNCSLTEAGC 98
Query: 422 SQLLDTLSTLRRPPT--SLSIADNNLG 446
L STLR PT L ++DN LG
Sbjct: 99 GVL---PSTLRSLPTLRELHLSDNPLG 122
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 364 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423
L S L +P L L +SDN + D G+R L + +C+ L +L LE C L+
Sbjct: 101 LPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDP--QCH-LEKLQLEYCRLTAASCEP 157
Query: 424 LLDTLSTLRRPPTSLSIADNNLGRFCA 450
L L R L++++N++G A
Sbjct: 158 LASVLRA-TRALKELTVSNNDIGEAGA 183
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418
A+ +DL + +L+ LD+S N + + GI +L P + S + L L+L C+++
Sbjct: 210 ANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCK---LRTLWLWECDITA 266
Query: 419 RGVSQLLDTLSTLRRPPTSLSIADNNL 445
G L L ++ LS+A N L
Sbjct: 267 EGCKDLCRVLRA-KQSLKELSLASNEL 292
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 425
S L +L L +S N + D+G++ L Q L EL+L +C+++ G S L
Sbjct: 331 SVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPD---TVLRELWLGDCDVTNSGCSSLA 387
Query: 426 DTLSTLRRPPTSLSIADNNLG 446
+ L R L +++N +G
Sbjct: 388 NVLLA-NRSLRELDLSNNCMG 407
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 6 NLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENG 65
+LF + GD+ +PYV+ ++ LP Q+ + F D SPD+ E+G
Sbjct: 281 DLFFDIHGDEDLPYVFAAGSEX-------LPGFTEQQRVEQSAFIDSFKRASPDFQDEHG 333
Query: 66 RKRGRY 71
G+Y
Sbjct: 334 YPPGKY 339
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 367 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 426
L + L++LD+ DNT G +L A + L EL L +C LS RG + ++D
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 266
Query: 427 TLSTL 431
S L
Sbjct: 267 AFSKL 271
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 367 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 426
L + L++LD+ DNT G +L A + L EL L +C LS RG + ++D
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVD 265
Query: 427 TLSTL 431
S L
Sbjct: 266 AFSKL 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,309,538
Number of Sequences: 62578
Number of extensions: 472162
Number of successful extensions: 1017
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 30
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)