Query 012930
Match_columns 453
No_of_seqs 320 out of 3046
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.9 4.8E-21 1E-25 185.1 25.2 246 180-445 73-319 (319)
2 cd00116 LRR_RI Leucine-rich re 99.9 4.9E-21 1.1E-25 185.0 24.2 261 167-449 25-294 (319)
3 KOG1909 Ran GTPase-activating 99.9 2.9E-21 6.3E-26 176.7 14.9 267 167-449 32-316 (382)
4 KOG1909 Ran GTPase-activating 99.9 1.7E-20 3.8E-25 171.6 16.9 252 180-450 22-287 (382)
5 PLN00113 leucine-rich repeat r 99.8 3.7E-20 8.1E-25 204.8 12.0 244 151-447 118-370 (968)
6 PLN00113 leucine-rich repeat r 99.8 7.1E-20 1.5E-24 202.5 13.0 247 151-451 93-350 (968)
7 KOG0444 Cytoskeletal regulator 99.8 6E-21 1.3E-25 185.9 -4.9 238 162-444 99-373 (1255)
8 KOG4194 Membrane glycoprotein 99.8 3.5E-20 7.6E-25 179.4 -1.8 242 166-446 150-405 (873)
9 KOG4194 Membrane glycoprotein 99.7 3.1E-19 6.7E-24 172.9 -1.3 230 167-447 199-430 (873)
10 KOG0444 Cytoskeletal regulator 99.7 2.3E-19 5E-24 174.9 -2.8 230 167-453 80-311 (1255)
11 KOG4341 F-box protein containi 99.7 9.2E-17 2E-21 150.4 7.1 47 18-102 70-116 (483)
12 COG5238 RNA1 Ran GTPase-activa 99.6 5.5E-14 1.2E-18 125.0 17.1 252 180-450 22-289 (388)
13 PRK15370 E3 ubiquitin-protein 99.6 2.1E-15 4.5E-20 158.2 5.4 105 309-447 325-429 (754)
14 KOG0472 Leucine-rich repeat pr 99.5 5E-17 1.1E-21 151.3 -9.9 220 167-447 70-289 (565)
15 KOG0472 Leucine-rich repeat pr 99.5 1.9E-15 4.2E-20 140.9 0.4 243 166-446 207-541 (565)
16 PRK15370 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 152.8 4.8 32 167-200 201-232 (754)
17 PRK15387 E3 ubiquitin-protein 99.5 4.5E-14 9.8E-19 147.5 8.7 208 166-450 243-462 (788)
18 KOG4308 LRR-containing protein 99.5 4.8E-15 1E-19 148.0 1.1 241 190-449 89-334 (478)
19 COG5238 RNA1 Ran GTPase-activa 99.5 9.8E-13 2.1E-17 117.1 15.4 231 206-451 21-260 (388)
20 KOG0618 Serine/threonine phosp 99.5 1.1E-14 2.4E-19 148.5 1.1 227 166-444 242-487 (1081)
21 KOG2120 SCF ubiquitin ligase, 99.5 7.5E-14 1.6E-18 125.7 6.1 186 188-415 185-374 (419)
22 KOG0618 Serine/threonine phosp 99.4 7.5E-15 1.6E-19 149.8 -1.0 204 188-447 241-466 (1081)
23 KOG4308 LRR-containing protein 99.4 3.5E-14 7.6E-19 141.8 0.0 215 218-450 89-307 (478)
24 KOG4237 Extracellular matrix p 99.4 3.6E-14 7.7E-19 132.3 -0.5 240 164-445 66-358 (498)
25 PRK15387 E3 ubiquitin-protein 99.4 3.4E-13 7.4E-18 141.0 6.4 154 166-386 223-376 (788)
26 KOG0617 Ras suppressor protein 99.3 6.8E-15 1.5E-19 122.2 -8.9 157 214-418 31-187 (264)
27 KOG3207 Beta-tubulin folding c 99.3 4.5E-13 9.8E-18 126.6 1.8 92 183-290 141-232 (505)
28 PLN03210 Resistant to P. syrin 99.3 4.6E-12 1E-16 141.5 9.1 103 166-291 590-692 (1153)
29 KOG0617 Ras suppressor protein 99.2 3.5E-14 7.5E-19 118.0 -9.3 160 182-386 27-187 (264)
30 PLN03210 Resistant to P. syrin 99.2 2.1E-11 4.6E-16 136.3 8.5 230 166-447 612-860 (1153)
31 KOG3207 Beta-tubulin folding c 99.2 9.8E-12 2.1E-16 117.7 3.8 222 186-448 119-341 (505)
32 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.3E-16 116.0 1.3 213 188-449 67-338 (498)
33 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.4E-15 102.2 3.5 130 278-440 17-147 (175)
34 KOG2120 SCF ubiquitin ligase, 99.1 9.4E-11 2E-15 105.9 4.5 160 217-415 186-349 (419)
35 KOG0532 Leucine-rich repeat (L 98.9 2.9E-11 6.4E-16 117.9 -4.6 152 248-448 98-249 (722)
36 PF14580 LRR_9: Leucine-rich r 98.9 3.2E-10 6.9E-15 98.0 1.8 132 214-380 17-148 (175)
37 KOG4341 F-box protein containi 98.9 2.7E-09 5.9E-14 100.8 6.9 239 166-444 165-437 (483)
38 COG4886 Leucine-rich repeat (L 98.8 3.6E-09 7.8E-14 105.4 5.2 175 216-447 116-291 (394)
39 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.6E-14 99.0 1.3 129 249-418 285-413 (490)
40 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.7E-14 98.9 0.8 128 216-386 284-413 (490)
41 KOG0532 Leucine-rich repeat (L 98.7 7.2E-10 1.6E-14 108.4 -5.0 196 166-415 76-271 (722)
42 COG4886 Leucine-rich repeat (L 98.6 1.6E-08 3.5E-13 100.7 3.9 193 170-418 98-291 (394)
43 PLN03150 hypothetical protein; 98.6 8.2E-08 1.8E-12 100.6 7.8 64 343-418 441-504 (623)
44 PLN03150 hypothetical protein; 98.5 2.2E-07 4.8E-12 97.4 8.1 106 250-383 420-526 (623)
45 KOG1859 Leucine-rich repeat pr 98.4 1.3E-08 2.9E-13 102.3 -3.0 156 249-446 165-322 (1096)
46 KOG2982 Uncharacterized conser 98.4 2.8E-07 6.1E-12 83.8 5.5 65 344-418 199-263 (418)
47 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.6E-12 86.1 2.0 170 187-386 70-263 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.5E-13 102.7 -6.7 105 309-445 187-291 (1096)
49 PF13855 LRR_8: Leucine rich r 98.3 9.2E-08 2E-12 67.8 -0.3 58 345-415 2-60 (61)
50 KOG0531 Protein phosphatase 1, 98.3 4.4E-08 9.6E-13 98.0 -3.8 234 168-447 75-319 (414)
51 KOG1947 Leucine rich repeat pr 98.3 3.5E-06 7.5E-11 86.1 9.8 218 186-444 186-438 (482)
52 PF13855 LRR_8: Leucine rich r 98.2 2.8E-07 6.2E-12 65.3 0.7 61 309-384 1-61 (61)
53 KOG1947 Leucine rich repeat pr 98.2 3.9E-06 8.4E-11 85.7 8.7 224 166-419 189-443 (482)
54 KOG0531 Protein phosphatase 1, 98.2 1.2E-07 2.6E-12 94.9 -3.9 36 406-447 234-269 (414)
55 KOG4579 Leucine-rich repeat (L 98.1 3.8E-07 8.2E-12 73.7 -0.5 36 345-385 78-113 (177)
56 KOG3665 ZYG-1-like serine/thre 98.1 1.4E-05 3E-10 84.0 9.7 160 248-440 122-282 (699)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.6E-05 3.4E-10 83.7 8.3 145 188-362 122-268 (699)
58 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.2E-10 54.1 2.8 37 345-386 2-38 (44)
59 KOG4579 Leucine-rich repeat (L 97.9 1.8E-06 3.9E-11 69.8 -0.3 108 309-445 27-135 (177)
60 KOG4658 Apoptotic ATPase [Sign 97.9 7.7E-06 1.7E-10 88.2 4.1 129 167-320 525-653 (889)
61 PF12799 LRR_4: Leucine Rich r 97.8 3.3E-05 7.2E-10 50.3 3.6 38 372-418 1-38 (44)
62 PRK15386 type III secretion pr 97.6 0.00022 4.7E-09 69.6 7.6 139 212-415 48-188 (426)
63 KOG4658 Apoptotic ATPase [Sign 97.5 6.2E-05 1.3E-09 81.4 4.0 153 188-381 523-677 (889)
64 KOG2123 Uncharacterized conser 97.3 3.2E-05 7E-10 70.0 -1.5 106 279-410 18-123 (388)
65 KOG1644 U2-associated snRNP A' 97.2 0.00045 9.7E-09 59.9 4.9 110 280-415 42-151 (233)
66 PRK15386 type III secretion pr 97.2 0.00022 4.8E-09 69.6 3.4 57 184-258 48-104 (426)
67 KOG2123 Uncharacterized conser 97.1 4.2E-05 9.1E-10 69.3 -2.4 105 308-439 18-123 (388)
68 KOG4242 Predicted myosin-I-bin 97.1 0.0014 3E-08 63.9 6.7 238 188-449 214-456 (553)
69 KOG2739 Leucine-rich acidic nu 97.0 0.00019 4.1E-09 64.7 0.6 88 309-418 43-130 (260)
70 KOG3864 Uncharacterized conser 96.8 0.00049 1.1E-08 59.7 1.1 69 310-392 102-172 (221)
71 smart00368 LRR_RI Leucine rich 96.7 0.0026 5.6E-08 36.9 3.4 23 372-394 2-24 (28)
72 KOG1644 U2-associated snRNP A' 96.6 0.0019 4.2E-08 56.1 3.2 129 282-443 21-150 (233)
73 KOG2739 Leucine-rich acidic nu 96.5 0.00098 2.1E-08 60.2 1.4 85 278-378 63-149 (260)
74 smart00368 LRR_RI Leucine rich 96.3 0.0062 1.4E-07 35.3 3.4 26 404-429 2-27 (28)
75 PF13516 LRR_6: Leucine Rich r 96.2 0.0027 5.9E-08 35.3 1.3 21 372-392 2-22 (24)
76 PF13516 LRR_6: Leucine Rich r 95.6 0.0088 1.9E-07 33.2 1.7 23 403-425 1-23 (24)
77 KOG3864 Uncharacterized conser 95.5 0.0043 9.3E-08 54.0 0.4 59 249-319 102-161 (221)
78 PF12937 F-box-like: F-box-lik 94.9 0.026 5.5E-07 37.2 2.6 21 20-40 1-21 (47)
79 KOG4242 Predicted myosin-I-bin 94.7 0.019 4.1E-07 56.2 2.3 70 374-449 415-484 (553)
80 KOG3735 Tropomodulin and leiom 94.1 0.08 1.7E-06 49.7 4.8 123 304-438 193-318 (353)
81 smart00367 LRR_CC Leucine-rich 93.8 0.062 1.3E-06 30.4 2.3 21 372-392 2-23 (26)
82 KOG3735 Tropomodulin and leiom 93.5 0.24 5.3E-06 46.6 6.9 100 208-316 190-290 (353)
83 smart00367 LRR_CC Leucine-rich 92.6 0.15 3.2E-06 28.8 2.6 24 215-238 1-25 (26)
84 PF00646 F-box: F-box domain; 91.5 0.18 3.9E-06 33.2 2.5 23 18-40 1-23 (48)
85 PF13504 LRR_7: Leucine rich r 91.1 0.11 2.3E-06 26.1 0.8 6 349-354 6-11 (17)
86 PF00560 LRR_1: Leucine Rich R 90.4 0.1 2.2E-06 28.2 0.4 15 435-450 2-16 (22)
87 KOG3763 mRNA export factor TAP 79.1 2.9 6.3E-05 42.3 4.6 17 307-323 216-232 (585)
88 PF13306 LRR_5: Leucine rich r 77.3 2.4 5.2E-05 34.2 3.0 35 342-382 56-91 (129)
89 PF13306 LRR_5: Leucine rich r 75.7 1.8 3.9E-05 35.0 1.9 100 248-381 12-112 (129)
90 smart00256 FBOX A Receptor for 74.3 3.2 6.9E-05 25.7 2.4 18 23-40 1-18 (41)
91 smart00369 LRR_TYP Leucine-ric 72.1 3 6.6E-05 23.1 1.7 16 216-231 2-17 (26)
92 smart00370 LRR Leucine-rich re 72.1 3 6.6E-05 23.1 1.7 16 216-231 2-17 (26)
93 smart00365 LRR_SD22 Leucine-ri 69.7 4.3 9.3E-05 22.9 1.9 15 372-386 2-16 (26)
94 KOG0473 Leucine-rich repeat pr 68.1 0.084 1.8E-06 47.2 -8.0 85 308-418 41-125 (326)
95 KOG2997 F-box protein FBX9 [Ge 65.5 2.4 5.2E-05 39.8 0.5 73 17-102 104-184 (366)
96 KOG3763 mRNA export factor TAP 61.3 9 0.00019 39.0 3.6 96 342-449 216-315 (585)
97 PF06881 Elongin_A: RNA polyme 59.6 26 0.00057 27.6 5.4 65 19-103 3-70 (109)
98 smart00364 LRR_BAC Leucine-ric 53.7 9.3 0.0002 21.5 1.3 14 434-447 3-16 (26)
99 KOG0473 Leucine-rich repeat pr 48.5 0.35 7.7E-06 43.4 -7.5 91 273-386 35-125 (326)
100 KOG1665 AFH1-interacting prote 36.5 34 0.00074 30.6 2.8 11 166-176 142-152 (302)
101 PF01816 LRV: Leucine rich rep 34.5 51 0.0011 18.6 2.4 22 25-46 1-24 (26)
102 KOG0281 Beta-TrCP (transducin 24.7 63 0.0014 31.0 2.6 23 18-40 73-99 (499)
103 PF13013 F-box-like_2: F-box-l 22.3 59 0.0013 25.7 1.7 21 20-40 22-42 (109)
104 cd08795 Death_IRAK2 Death doma 21.7 50 0.0011 24.9 1.1 19 18-36 1-19 (88)
105 PLN03215 ascorbic acid mannose 21.0 45 0.00097 32.7 1.0 17 20-36 4-20 (373)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.89 E-value=4.8e-21 Score=185.10 Aligned_cols=246 Identities=25% Similarity=0.245 Sum_probs=193.6
Q ss_pred HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC
Q 012930 180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 259 (453)
Q Consensus 180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~ 259 (453)
++..+..+++|++|++++|.+.......+..+... ++|++|++++|.+++.+...+...+... .++|+.|++++|.
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~ 148 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCc
Confidence 45556678899999999998765555555555555 7799999999999988888887776653 2789999999999
Q ss_pred CCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC
Q 012930 260 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339 (453)
Q Consensus 260 l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 339 (453)
++..+. ..+...+..+++|++|++++|.+++.....++.++... ++|+.|++++|.+++... ..++..+.
T Consensus 149 l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~----~~l~~~~~- 218 (319)
T cd00116 149 LEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGA----SALAETLA- 218 (319)
T ss_pred CCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHH----HHHHHHhc-
Confidence 986332 25677778889999999999999987777777766443 899999999999885322 11333333
Q ss_pred CCCCCcccEEEecCCCCChhhHHHHHHHHh-CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 340 GKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 340 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
.+++|++|++++|.+++.++..+...+. ..+.|++|++++|.+++.|...+.. .+..+++|+++++++|.+++
T Consensus 219 --~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 219 --SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred --ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCCCCcH
Confidence 6789999999999999888777776554 3678999999999999888777764 35555899999999999999
Q ss_pred hhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930 419 RGVSQLLDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l 445 (453)
.++..++..+....+.|++|++.+|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999988436799999998864
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.88 E-value=4.9e-21 Score=184.98 Aligned_cols=261 Identities=21% Similarity=0.232 Sum_probs=202.8
Q ss_pred cceeccccccc-----hHHHhhhhcCCCccEEEeccccCh---HHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHH
Q 012930 167 ARCLRLQNALC-----VEETCQLLRESKLQSLVLRWIRFE---EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 238 (453)
Q Consensus 167 l~~l~L~~~~~-----~~~~~~l~~~~~L~~L~Ls~~~~~---~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 238 (453)
++.+.+.++.. ..+...+...+.+++++++++... ..+.. ....+..+++|++|++++|.+....+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS-LLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH-HHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 56666666554 335555666788999999998865 22333 3333445889999999999998777776665
Q ss_pred HhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 317 (453)
Q Consensus 239 ~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 317 (453)
.... ++|++|++++|.+++.+.. .+...+..+ ++|++|++++|.+++..+..+...+ ..+++|++|+++
T Consensus 104 l~~~-----~~L~~L~ls~~~~~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~ 173 (319)
T cd00116 104 LLRS-----SSLQELKLNNNGLGDRGLR----LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLA 173 (319)
T ss_pred Hhcc-----CcccEEEeeCCccchHHHH----HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECc
Confidence 3211 3499999999999863333 566677777 9999999999999977776666654 345899999999
Q ss_pred CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHH
Q 012930 318 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 397 (453)
Q Consensus 318 ~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~ 397 (453)
+|.+++.+. ..++..+. .+++|+.|++++|.+++.++..++..+..+++|+.|++++|.+++.|+..++..+
T Consensus 174 ~n~l~~~~~----~~l~~~l~---~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~- 245 (319)
T cd00116 174 NNGIGDAGI----RALAEGLK---ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL- 245 (319)
T ss_pred CCCCchHHH----HHHHHHHH---hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH-
Confidence 999985321 11333444 4579999999999999999888999999999999999999999998888877533
Q ss_pred hhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 398 QASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 398 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
....+.|++|++++|.+++.+...++..+... ++|+++++++|.+++++
T Consensus 246 --~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 246 --LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG 294 (319)
T ss_pred --hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence 22458999999999999999999999999984 67999999999999875
No 3
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-21 Score=176.68 Aligned_cols=267 Identities=17% Similarity=0.157 Sum_probs=208.9
Q ss_pred cceeccccccchH-----HHhhhhcCCCccEEEeccccChHH---HHHH---HHHHHhcCCCccEEEcCCCCCChhHHHH
Q 012930 167 ARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFEEH---VQAL---CKLLIQNSETLASLEFLHCKLSPSFVEG 235 (453)
Q Consensus 167 l~~l~L~~~~~~~-----~~~~l~~~~~L~~L~Ls~~~~~~~---~~~~---~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 235 (453)
+..++++++.+.. +...+.+.++|+.-++|.--.... +... +...+..+|.|+.++||.|.+...+++.
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 4555566655544 333445557787777766432211 1111 2222346679999999999999999999
Q ss_pred HHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-----hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCC
Q 012930 236 ICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-----FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS 310 (453)
Q Consensus 236 l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-----~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~ 310 (453)
+.+.+.+ +..|++|.|.+|++...+...+..++.. .+..-+.|+++..+.|.+.+.+...++.++... +.
T Consensus 112 l~~ll~s----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~ 186 (382)
T KOG1909|consen 112 LEELLSS----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PT 186 (382)
T ss_pred HHHHHHh----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cc
Confidence 9988887 4899999999999988776655443332 344557899999999999998888888876554 89
Q ss_pred CCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHH
Q 012930 311 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 390 (453)
Q Consensus 311 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 390 (453)
|+.+.++.|.|...+ ...+..++. +|++|++|||+.|-++..|...+++++..+++|++|++++|.+.+.|+.
T Consensus 187 leevr~~qN~I~~eG----~~al~eal~---~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEG----VTALAEALE---HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred cceEEEecccccCch----hHHHHHHHH---hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 999999999988432 233555565 7899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC--Cccc
Q 012930 391 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL--GRFC 449 (453)
Q Consensus 391 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~ 449 (453)
++..++.. ..+.|+.|.|.+|.|+..++..++..+.. .+.|..|+|++|.+ ++++
T Consensus 260 a~~~al~~---~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~ 316 (382)
T KOG1909|consen 260 AFVDALKE---SAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEG 316 (382)
T ss_pred HHHHHHhc---cCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchh
Confidence 99987643 35899999999999999999999999988 57799999999999 4443
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-20 Score=171.60 Aligned_cols=252 Identities=23% Similarity=0.282 Sum_probs=207.4
Q ss_pred HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC---CCChhHHHH---HHHHhhccccCCcceeEE
Q 012930 180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEG---ICRSLCSKRKRIHKIENL 253 (453)
Q Consensus 180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n---~l~~~~~~~---l~~~L~~~~~~~~~L~~L 253 (453)
+...+.....+++++||+|.+...-...+...+.+.+.|+..+++.- ++....+.+ +.++|.. +++|+++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~----~~~L~~l 97 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG----CPKLQKL 97 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc----CCceeEe
Confidence 34455567899999999999776655555555666789999999865 344444444 3455554 4689999
Q ss_pred EccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHh--------hCCCCCCEEEcCCCCCCCcc
Q 012930 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 254 ~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~--------~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+||+|-|...++. .+...++++.+|++|.|.+|.+...+...+..+|+ ...+.|+++...+|++.+.
T Consensus 98 dLSDNA~G~~g~~----~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~- 172 (382)
T KOG1909|consen 98 DLSDNAFGPKGIR----GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG- 172 (382)
T ss_pred eccccccCccchH----HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-
Confidence 9999999997766 88888999999999999999998877777666543 2356899999999998853
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+...+...+. .++.|+.+.+..|.|...|+..+..++.++++|+.|||..|.++.+|..++.. ++..++.
T Consensus 173 ---ga~~~A~~~~---~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak----aL~s~~~ 242 (382)
T KOG1909|consen 173 ---GATALAEAFQ---SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK----ALSSWPH 242 (382)
T ss_pred ---cHHHHHHHHH---hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH----Hhcccch
Confidence 3333555666 56899999999999999999999999999999999999999999999998884 4677789
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|+.|++++|.+...|+.++.+++...+++|+.|.+.+|.|+..+.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 999999999999999999999999987889999999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=3.7e-20 Score=204.76 Aligned_cols=244 Identities=22% Similarity=0.218 Sum_probs=121.2
Q ss_pred cCCceeeeehhhhc--------cccceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEE
Q 012930 151 CDYSKLSYHCQQFG--------HYARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL 221 (453)
Q Consensus 151 ~~l~~l~l~~~~~~--------~~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L 221 (453)
.+++.+.++.+.+. ..++.|+++++... ..+..+..+++|++|+|++|.+....+. .+.++++|++|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCee
Confidence 45555555544221 14566666666554 2444555666666666666664332221 13455666666
Q ss_pred EcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930 222 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 301 (453)
Q Consensus 222 ~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 301 (453)
+|++|.+.+..+..+.. +.+|+.|++++|.++. .++..++.+++|++|++++|.+.+..+..+
T Consensus 194 ~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l- 256 (968)
T PLN00113 194 TLASNQLVGQIPRELGQ--------MKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL- 256 (968)
T ss_pred eccCCCCcCcCChHHcC--------cCCccEEECcCCccCC--------cCChhHhcCCCCCEEECcCceeccccChhH-
Confidence 66666665554444433 3556666666666554 344445555666666666665555444433
Q ss_pred HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD 381 (453)
Q Consensus 302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 381 (453)
..+++|++|++++|.+.+..+ ..+. .+++|++|++++|.++. .+|..+..+++|+.|++++
T Consensus 257 ----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 257 ----GNLKNLQYLFLYQNKLSGPIP--------PSIF---SLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFS 317 (968)
T ss_pred ----hCCCCCCEEECcCCeeeccCc--------hhHh---hccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCC
Confidence 224556666666665554332 3333 33455555555555443 2444444455555555555
Q ss_pred CCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 382 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 382 N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
|.+++. .| ..+..+++|+.|++++|.++.. ++..+..+ ++|+.|++++|.+++
T Consensus 318 n~~~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~-~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 318 NNFTGK-----IP---VALTSLPRLQVLQLWSNKFSGE----IPKNLGKH-NNLTVLDLSTNNLTG 370 (968)
T ss_pred CccCCc-----CC---hhHhcCCCCCEEECcCCCCcCc----CChHHhCC-CCCcEEECCCCeeEe
Confidence 544432 22 2233344445555555544432 23333331 234444444444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=7.1e-20 Score=202.51 Aligned_cols=247 Identities=21% Similarity=0.219 Sum_probs=189.5
Q ss_pred cCCceeeeehhhh----------c-cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930 151 CDYSKLSYHCQQF----------G-HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA 219 (453)
Q Consensus 151 ~~l~~l~l~~~~~----------~-~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~ 219 (453)
..++.|.++.+.+ . ..++.|+++++....... ....++|++|+|++|.+...... .+.++++|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~ 167 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLK 167 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCCh----HHhcCCCCC
Confidence 5566666654422 1 157888888876653221 13457889999988886543322 256788999
Q ss_pred EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHH
Q 012930 220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRM 299 (453)
Q Consensus 220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 299 (453)
+|+|++|.+.+..+..+.. +++|++|++++|.++. .++..+..+++|++|+|++|.+.+..+..
T Consensus 168 ~L~L~~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTN--------LTSLEFLTLASNQLVG--------QIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred EEECccCcccccCChhhhh--------CcCCCeeeccCCCCcC--------cCChHHcCcCCccEEECcCCccCCcCChh
Confidence 9999999888777777765 5889999999998887 56777888999999999999988777766
Q ss_pred HHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeC
Q 012930 300 VFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDI 379 (453)
Q Consensus 300 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 379 (453)
+ ..+++|++|++++|.+++..+ ..++ .+++|++|++++|.+++ .+|..+..+++|+.|++
T Consensus 232 l-----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 232 I-----GGLTSLNHLDLVYNNLTGPIP--------SSLG---NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDL 291 (968)
T ss_pred H-----hcCCCCCEEECcCceeccccC--------hhHh---CCCCCCEEECcCCeeec----cCchhHhhccCcCEEEC
Confidence 5 347899999999999887544 6666 67899999999999876 47788888999999999
Q ss_pred CCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 380 SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 380 s~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
++|.+++. +| ..+..+++|+.|++++|.++.. ++..+..+ ++|+.|++++|.+++.+|.
T Consensus 292 s~n~l~~~-----~p---~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 292 SDNSLSGE-----IP---ELVIQLQNLEILHLFSNNFTGK----IPVALTSL-PRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred cCCeeccC-----CC---hhHcCCCCCcEEECCCCccCCc----CChhHhcC-CCCCEEECcCCCCcCcCCh
Confidence 99998754 55 4467789999999999998875 55666664 5599999999999877664
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=6e-21 Score=185.88 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=167.6
Q ss_pred hhcc-ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHh
Q 012930 162 QFGH-YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 240 (453)
Q Consensus 162 ~~~~-~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L 240 (453)
.|.. ++..++|+.|++.+.|..+...+++-.|+||+|.++.....+ +.++..|-.|+||+|++....|.. ..
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~l----finLtDLLfLDLS~NrLe~LPPQ~-RR-- 171 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSL----FINLTDLLFLDLSNNRLEMLPPQI-RR-- 171 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchH----HHhhHhHhhhccccchhhhcCHHH-HH--
Confidence 4444 788899999999999999999999999999999965544333 556677888888888876443332 22
Q ss_pred hccccCCcceeEEEccCCCCCCCCchhhH-----------------HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHH
Q 012930 241 CSKRKRIHKIENLSIDISSFIENCPSSVV-----------------VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 303 (453)
Q Consensus 241 ~~~~~~~~~L~~L~L~~n~l~~~~~~~i~-----------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 303 (453)
+..|++|.|++|.+......++| ..+|..+..+.+|..+||+.|.+.. .|..+..
T Consensus 172 ------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~- 243 (1255)
T KOG0444|consen 172 ------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK- 243 (1255)
T ss_pred ------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhh-
Confidence 35566666666665443333332 1455566777888888888888865 6666533
Q ss_pred HhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930 304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 383 (453)
Q Consensus 304 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 383 (453)
..+|+.|+||+|.|+. +....+ ...+|++|+|+.|+++. +|.++..++.|+.|.+.+|+
T Consensus 244 ----l~~LrrLNLS~N~ite---------L~~~~~---~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 244 ----LRNLRRLNLSGNKITE---------LNMTEG---EWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ----hhhhheeccCcCceee---------eeccHH---HHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCc
Confidence 6889999999999885 223444 34678888999998884 88888888899999888888
Q ss_pred CChhHHH-------------------hHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 384 IEDDGIR-------------------SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 384 i~~~g~~-------------------~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
++-+|+. .+.| +.+..|.+|+.|.|++|.+-. +++++.-+ ..|+.||+..|.
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LElVP---EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL-~~l~vLDlreNp 373 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLELVP---EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLL-PDLKVLDLRENP 373 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccccCc---hhhhhhHHHHHhcccccceee-----chhhhhhc-CCcceeeccCCc
Confidence 8766531 1123 456666777777777777655 57777664 347777777774
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=3.5e-20 Score=179.36 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=120.2
Q ss_pred ccceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++|+.|.+.+++..-+. ..++++|+|++|.++....+. +.++.+|..|.|+.|.|+...+..+..
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~------ 219 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKR------ 219 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhh------
Confidence 367778887777765544433 377888888888755443332 445557778888888877666666544
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|+.|+|..|.|.. .=...+.++++|+.|.|..|.+.. +-.+.+..+.++++|+|+.|++...
T Consensus 220 --L~~L~~LdLnrN~iri--------ve~ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 220 --LPKLESLDLNRNRIRI--------VEGLTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred --cchhhhhhccccceee--------ehhhhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh
Confidence 4667777777776654 112334455555555555554322 1111122245555555555554421
Q ss_pred ccc--c----------CcCchH-HhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHh
Q 012930 325 LSK--Y----------DRSGPL-FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS 391 (453)
Q Consensus 325 ~~~--~----------~~~~l~-~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~ 391 (453)
... + ..+++. -.+..+..+++|++|+|++|+|+. .-+.++..+..|++|+|++|.|+.
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L~~Le~LnLs~Nsi~~----- 355 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR----LDEGSFRVLSQLEELNLSHNSIDH----- 355 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc----CChhHHHHHHHhhhhcccccchHH-----
Confidence 110 0 000000 011222234455555555555443 112244444455555555554443
Q ss_pred HHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 392 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 392 l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
+.. .++..+++|++|||++|.|+. .+++-+..+..+ ++|++|++.+|+|.
T Consensus 356 l~e---~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl-~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 356 LAE---GAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGL-PSLRKLRLTGNQLK 405 (873)
T ss_pred HHh---hHHHHhhhhhhhcCcCCeEEE-EEecchhhhccc-hhhhheeecCceee
Confidence 122 234444566666666665443 122223333332 33666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-19 Score=172.88 Aligned_cols=230 Identities=23% Similarity=0.185 Sum_probs=152.6
Q ss_pred cceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 167 ARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
+-.+.|+.|..+.++...++ +++|+.|+|..|.+...-.. .+.++++|+.|.|..|+|....-.++-.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l----tFqgL~Sl~nlklqrN~I~kL~DG~Fy~------- 267 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL----TFQGLPSLQNLKLQRNDISKLDDGAFYG------- 267 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh----hhcCchhhhhhhhhhcCcccccCcceee-------
Confidence 34444555555554444433 45555555555553322111 1345555555555555554332222222
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+.++++|+|..|++.. .--..+-++.+|+.|+|++|.+..--++.+ ..+++|++|+|++|.|+.--
T Consensus 268 -l~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-----sftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 268 -LEKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-----SFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred -ecccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh-----hhcccceeEeccccccccCC
Confidence 5788899999998876 333455688999999999999877666655 33689999999999998632
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
+ ..+. .+..|++|+|++|.++. +.+ ++..+++|+.|||++|.|+.. +..-...+..++
T Consensus 334 ~--------~sf~---~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-----IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 334 E--------GSFR---VLSQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-----IEDAAVAFNGLP 392 (873)
T ss_pred h--------hHHH---HHHHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-----Eecchhhhccch
Confidence 2 3333 56789999999999985 555 788999999999999987431 000003356679
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
.|++|.|.+|+|.... -.++..+ ..|+.|||.+|.|-.
T Consensus 393 ~LrkL~l~gNqlk~I~----krAfsgl-~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIP----KRAFSGL-EALEHLDLGDNAIAS 430 (873)
T ss_pred hhhheeecCceeeecc----hhhhccC-cccceecCCCCccee
Confidence 9999999999987752 3355554 349999999998754
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=2.3e-19 Score=174.92 Aligned_cols=230 Identities=22% Similarity=0.185 Sum_probs=178.8
Q ss_pred cceeccccccchH--HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 167 ARCLRLQNALCVE--ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 167 l~~l~L~~~~~~~--~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
++.+.+..|.++. +|..++.+..|..||||+|++......+ .+-+++-.|+||+|.|....-..+..
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-----E~AKn~iVLNLS~N~IetIPn~lfin------ 148 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-----EYAKNSIVLNLSYNNIETIPNSLFIN------ 148 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-----hhhcCcEEEEcccCccccCCchHHHh------
Confidence 4555555555443 7888999999999999999976654432 45578899999999987543333333
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+..|-.|+|++|++.. +|..+..+..|+.|.|++|++.-...+.+ ..+++|++|.+++.+-+-
T Consensus 149 --LtDLLfLDLS~NrLe~---------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl- 211 (1255)
T KOG0444|consen 149 --LTDLLFLDLSNNRLEM---------LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTL- 211 (1255)
T ss_pred --hHhHhhhccccchhhh---------cCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchh-
Confidence 3557789999999865 78888899999999999999876555554 346888999998876431
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
..+|..+. .+.+|..+||+.|++.. +|+.+..+++|+.|+||+|+|+.- . ...+...
T Consensus 212 ------~N~Ptsld---~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL------~---~~~~~W~ 268 (1255)
T KOG0444|consen 212 ------DNIPTSLD---DLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITEL------N---MTEGEWE 268 (1255)
T ss_pred ------hcCCCchh---hhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeee------e---ccHHHHh
Confidence 11335555 67899999999999994 899999999999999999999872 1 1123337
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccccCC
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG 453 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~~ 453 (453)
+|++|+|+.|+++. ++.+++++.+ |+.|.+.+|.++-+|+.||
T Consensus 269 ~lEtLNlSrNQLt~-----LP~avcKL~k-L~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTV-----LPDAVCKLTK-LTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred hhhhhccccchhcc-----chHHHhhhHH-HHHHHhccCcccccCCccc
Confidence 89999999999998 8999999655 9999999999999998776
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.66 E-value=9.2e-17 Score=150.44 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=35.9
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCCCCCCCCCch
Q 012930 18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVD 97 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~~~~~~~~~~ 97 (453)
.....||||++.++|+.|+-..+ +|+++...+|..++ .+++.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl----------------------------~r~a~~c~~~n~~A----------lD~~~ 111 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSL----------------------------CRAAQCCTMWNKLA----------LDGSC 111 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHH----------------------------HHHHHHHHHhhhhh----------hcccc
Confidence 34456999999999999996666 66777888895544 45688
Q ss_pred hHHHH
Q 012930 98 WQQRY 102 (453)
Q Consensus 98 ~~~~~ 102 (453)
|+...
T Consensus 112 ~q~id 116 (483)
T KOG4341|consen 112 WQHID 116 (483)
T ss_pred ceeee
Confidence 88766
No 12
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.60 E-value=5.5e-14 Score=124.97 Aligned_cols=252 Identities=21% Similarity=0.194 Sum_probs=188.7
Q ss_pred HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC---CCChhHHHHH---HHHhhccccCCcceeEE
Q 012930 180 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEGI---CRSLCSKRKRIHKIENL 253 (453)
Q Consensus 180 ~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n---~l~~~~~~~l---~~~L~~~~~~~~~L~~L 253 (453)
....+..+..+.+++||+|.+...-.......+.+-.+|+..+++.- ...+..+..+ .++|.. |+.|+..
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk----cp~l~~v 97 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK----CPRLQKV 97 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc----CCcceee
Confidence 45556667889999999999655433333344446688999888865 3334444433 333333 7999999
Q ss_pred EccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhh--------CCCCCCEEEcCCCCCCCcc
Q 012930 254 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 254 ~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~--------~~~~L~~L~Ls~n~l~~~~ 325 (453)
+|++|.|.... ++.+...+++-..|++|.|++|.+....-..|.++|++ +-+.|++.+...|++..-
T Consensus 98 ~LSDNAfg~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng- 172 (388)
T COG5238 98 DLSDNAFGSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG- 172 (388)
T ss_pred eccccccCccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-
Confidence 99999998843 44888999999999999999999876555556655543 346799999999997631
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
...-....+. +...|+++.+..|.|..+|++.+.- .+..+.+|+.|||..|-++..|...+.. ++...+
T Consensus 173 ---s~~~~a~~l~---sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~----al~~W~ 242 (388)
T COG5238 173 ---SKELSAALLE---SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD----ALCEWN 242 (388)
T ss_pred ---cHHHHHHHHH---hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH----Hhcccc
Confidence 1111122333 4478999999999999999988764 6778999999999999999999888874 467778
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcC-CCCCcEEECcCCCCCcccc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~ 450 (453)
.|+.|.+..|-++..|+..+...+... .++|..|-..+|.+.+.++
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 899999999999999999988887653 4568889888888766543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=2.1e-15 Score=158.25 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 388 (453)
++|+.|++++|.++. +|..+. ++|+.|++++|+|+. +|..+ .++|+.|+|++|.|+.
T Consensus 325 ~sL~~L~Ls~N~Lt~---------LP~~l~-----~sL~~L~Ls~N~L~~-----LP~~l--p~~L~~LdLs~N~Lt~-- 381 (754)
T PRK15370 325 PGLKTLEAGENALTS---------LPASLP-----PELQVLDVSKNQITV-----LPETL--PPTITTLDVSRNALTN-- 381 (754)
T ss_pred ccceeccccCCcccc---------CChhhc-----CcccEEECCCCCCCc-----CChhh--cCCcCEEECCCCcCCC--
Confidence 456666666666654 233332 578888888888774 55544 2578888888888775
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+|. .+. ..|+.|++++|+|+.. ...++..... ...+..|++.+|+|..
T Consensus 382 ----LP~---~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 ----LPE---NLP--AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEYNPFSE 429 (754)
T ss_pred ----CCH---hHH--HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeCCCccH
Confidence 442 122 3577888888887752 1112222222 2447888888888764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=5e-17 Score=151.33 Aligned_cols=220 Identities=22% Similarity=0.245 Sum_probs=124.5
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~ 246 (453)
+..+.+..+...+++..++....++.++.++|++......+ ....+|..++.++|.+..- +..+.+
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-----~s~~~l~~l~~s~n~~~el-~~~i~~-------- 135 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-----GSLISLVKLDCSSNELKEL-PDSIGR-------- 135 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-----hhhhhhhhhhccccceeec-CchHHH--------
Confidence 44555666666667777777777777777777744433322 3445677777777765532 223333
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
+..++.++..+|++.. ++..+.++.+|..+++.+|++....+..+. ++.|++||...|.++.
T Consensus 136 ~~~l~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------m~~L~~ld~~~N~L~t--- 197 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA------MKRLKHLDCNSNLLET--- 197 (565)
T ss_pred Hhhhhhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH------HHHHHhcccchhhhhc---
Confidence 3556677777777665 566666667777777777777664444431 3667777776666654
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 406 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L 406 (453)
+|..++ .+.+|..|+|+.|+|.. +| .|..|..|.+|+++.|+|.- +|+ +-..++..+
T Consensus 198 ------lP~~lg---~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~------lpa--e~~~~L~~l 254 (565)
T KOG0472|consen 198 ------LPPELG---GLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEM------LPA--EHLKHLNSL 254 (565)
T ss_pred ------CChhhc---chhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHh------hHH--HHhcccccc
Confidence 445555 44556666666665553 44 34555555555555555543 332 223344555
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
..|||..|++++ ++..+..+ ++|.+||+|+|.|++
T Consensus 255 ~vLDLRdNklke-----~Pde~clL-rsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 255 LVLDLRDNKLKE-----VPDEICLL-RSLERLDLSNNDISS 289 (565)
T ss_pred eeeecccccccc-----CchHHHHh-hhhhhhcccCCcccc
Confidence 555555555554 34444442 335555555555544
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.9e-15 Score=140.86 Aligned_cols=243 Identities=21% Similarity=0.174 Sum_probs=161.9
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.+.++++..+....+| ++.+|..|++|.+..|.+.. +-....++++++..|||..|++.. .|..+|.
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~----lpae~~~~L~~l~vLDLRdNklke-~Pde~cl------- 273 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM----LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL------- 273 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh----hHHHHhcccccceeeecccccccc-CchHHHH-------
Confidence 3666777777777666 67777777777777776333 333335688899999999999984 4455554
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh-------hHHHHHHHHHhhC-----------
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR-------DFGRMVFSSLLEA----------- 307 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~-------~~~~~l~~~L~~~----------- 307 (453)
+++|++|++++|.++. ++..++++ .|+.|-+.||++.. .+...+.+++...
T Consensus 274 -LrsL~rLDlSNN~is~---------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 274 -LRSLERLDLSNNDISS---------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred -hhhhhhhcccCCcccc---------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 5889999999999886 77777788 88888888887632 1222333333220
Q ss_pred ------------------CCCCCEE--------------------------EcCCCCCCCcccc---------------c
Q 012930 308 ------------------SSSLSIL--------------------------DLSGNSIGGWLSK---------------Y 328 (453)
Q Consensus 308 ------------------~~~L~~L--------------------------~Ls~n~l~~~~~~---------------~ 328 (453)
+.+.+.| +++.|++...-.. -
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 0012333 3333333210000 0
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh--------HHHhHHHH-----
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--------GIRSLIPY----- 395 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~--------g~~~l~~~----- 395 (453)
..+..|..+. .+++|..|+|++|.+.+ +|..++.+.+|++||+|.|+|... +...++..
T Consensus 423 ~isfv~~~l~---~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 423 KISFVPLELS---QLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred ccccchHHHH---hhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence 0111344555 56899999999999996 899899998999999999987531 11111100
Q ss_pred -H-HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 396 -F-VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 396 -l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
+ ...+.++.+|..|||.+|.|.. ++..++. ..+|++|++++|+|.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~-----IPp~Lgn-mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQ-----IPPILGN-MTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhh-----CChhhcc-ccceeEEEecCCccC
Confidence 0 0236677899999999999877 6888988 477999999999997
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.1e-14 Score=152.84 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=14.2
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccC
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRF 200 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~ 200 (453)
++.|++++|.+..++..+. .+|+.|++++|.+
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L 232 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQL 232 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCcc
Confidence 4444444444444433322 2455555555443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=4.5e-14 Score=147.54 Aligned_cols=208 Identities=19% Similarity=0.178 Sum_probs=119.6
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.|++++|.+..++.. .++|++|++++|.+..... ...+|+.|++++|+++... ..
T Consensus 243 ~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~--------lp~~L~~L~Ls~N~Lt~LP-~~---------- 300 (788)
T PRK15387 243 ELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP-VL---------- 300 (788)
T ss_pred CCcEEEecCCccCcccCc---ccccceeeccCCchhhhhh--------chhhcCEEECcCCcccccc-cc----------
Confidence 566677777766655431 2566777777766432111 1135666666666665321 10
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
.++|+.|++++|+++.... + ..+|+.|++++|.++. .+. + ..+|+.|+|++|+|+..
T Consensus 301 -p~~L~~LdLS~N~L~~Lp~------l------p~~L~~L~Ls~N~L~~-LP~-l-------p~~Lq~LdLS~N~Ls~L- 357 (788)
T PRK15387 301 -PPGLQELSVSDNQLASLPA------L------PSELCKLWAYNNQLTS-LPT-L-------PSGLQELSVSDNQLASL- 357 (788)
T ss_pred -ccccceeECCCCccccCCC------C------cccccccccccCcccc-ccc-c-------ccccceEecCCCccCCC-
Confidence 2557777777776654110 1 1234444455554433 221 0 13455555555555431
Q ss_pred cccC---------cC---chHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHH
Q 012930 326 SKYD---------RS---GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 393 (453)
Q Consensus 326 ~~~~---------~~---~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~ 393 (453)
|... .. .+|. ...+|+.|++++|+|+. +|.. .++|+.|++++|.|+. +
T Consensus 358 P~lp~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~Lss------I 417 (788)
T PRK15387 358 PTLPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTS------L 417 (788)
T ss_pred CCCCcccceehhhccccccCcc------cccccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCC------C
Confidence 1000 00 0111 12468888888888875 4432 3578889999998876 5
Q ss_pred HHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 394 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 394 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|.+ . ..|+.|++++|+|+. ++..+..+ ..|+.|+|++|+|++..+
T Consensus 418 P~l---~---~~L~~L~Ls~NqLt~-----LP~sl~~L-~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 418 PML---P---SGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL 462 (788)
T ss_pred Ccc---h---hhhhhhhhccCcccc-----cChHHhhc-cCCCeEECCCCCCCchHH
Confidence 521 1 468889999999986 67777774 559999999999987644
No 18
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.49 E-value=4.8e-15 Score=147.96 Aligned_cols=241 Identities=25% Similarity=0.272 Sum_probs=199.0
Q ss_pred ccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930 190 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 269 (453)
Q Consensus 190 L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~ 269 (453)
+..|.|.+|.+...............++|+.|++++|.+++.+...+++.+..+. +.+++|.+..|.++..++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l~~~g~~--- 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSLTSEGAA--- 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccccccchH---
Confidence 7778888888776666666666677889999999999999999999999988852 7888999999999998877
Q ss_pred HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhh---CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc-
Q 012930 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS- 345 (453)
Q Consensus 270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~- 345 (453)
.+.+.+..+..++.++++.|.+...+...++.++.. ..+++++|++++|.++. ..|..+...+... +.
T Consensus 163 -~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~---~~~ 234 (478)
T KOG4308|consen 163 -PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASG---ESL 234 (478)
T ss_pred -HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhcc---chh
Confidence 777778788999999999999887788888888875 67889999999999883 4455566666643 44
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCC-CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 424 (453)
+..|++..|.+.+.|++.+.+.+..+ +.++.++++.|.|++.|+..+. +.+..++.++.+.+++|.+++.++..+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHH
Confidence 67799999999999999999999888 7899999999999999988887 446667899999999999999999999
Q ss_pred HHHHhcCCCCCcEEECcCCCCCccc
Q 012930 425 LDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 425 ~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
.+.+.. ...+..+-+.++.....+
T Consensus 311 ~~~l~~-~~~~~~~~l~~~~~~~~~ 334 (478)
T KOG4308|consen 311 LEALER-KTPLLHLVLGGTGKGTRG 334 (478)
T ss_pred HHHhhh-cccchhhhccccCccchh
Confidence 998888 455777777766655443
No 19
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.49 E-value=9.8e-13 Score=117.07 Aligned_cols=231 Identities=16% Similarity=0.155 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH---HHHHhhcCCCCc
Q 012930 206 ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSGRSL 282 (453)
Q Consensus 206 ~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~---~l~~~l~~~~~L 282 (453)
..+..+.. +..+++++||+|-|+.+.+..+|+.+... .+|+..++++- +++.....++. .+..++.+||.|
T Consensus 21 ~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~----~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 21 GVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANV----RNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred HHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhh----cceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 33333343 67999999999999999999999988875 77887777653 33323233333 345677899999
Q ss_pred cEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhc------CCCCCCcccEEEecCCCC
Q 012930 283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG------AGKSLQSLRLLNLRGNNL 356 (453)
Q Consensus 283 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~------~~~~~~~L~~L~L~~n~l 356 (453)
+..+||+|.+....+..+...+.+ .+.|++|.+++|.++- ..++.+..++. .-.+-+.|++.....|++
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlGp----~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLGP----IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred eeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCCc----cchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 999999999998888888776655 5999999999998873 33333433222 112457899999999998
Q ss_pred ChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012930 357 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT 436 (453)
Q Consensus 357 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~ 436 (453)
..-.++..+..+..-..|.++.+..|.|..+|+..++- ..+.++.+|+.|+|..|-+|..|...++.+++. .+.|+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~~lr 245 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WNLLR 245 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cchhh
Confidence 87666677777776679999999999999999998875 457778999999999999999999999999999 55589
Q ss_pred EEECcCCCCCccccc
Q 012930 437 SLSIADNNLGRFCAN 451 (453)
Q Consensus 437 ~L~Ls~N~l~~~~~~ 451 (453)
.|.+..|-++..|.+
T Consensus 246 EL~lnDClls~~G~~ 260 (388)
T COG5238 246 ELRLNDCLLSNEGVK 260 (388)
T ss_pred hccccchhhccccHH
Confidence 999999998887764
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-14 Score=148.54 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=126.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHH------------------HhcCCCccEEEcCCCC
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLL------------------IQNSETLASLEFLHCK 227 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l------------------~~~~~~L~~L~L~~n~ 227 (453)
++.+++++.+....++.++..+.+|+.++..+|.+.....++.... ......|++|+|..|+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 4667777777777777777777777777777777644333321110 0113455555565555
Q ss_pred CChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHHHHHHHHHhh
Q 012930 228 LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 306 (453)
Q Consensus 228 l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~ 306 (453)
|.......+... ...+..|..+.|.+.. ++. .=..++.|+.|.+.+|.+++.....+ .
T Consensus 322 L~~lp~~~l~v~-------~~~l~~ln~s~n~l~~---------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-----~ 380 (1081)
T KOG0618|consen 322 LPSLPDNFLAVL-------NASLNTLNVSSNKLST---------LPSYEENNHAALQELYLANNHLTDSCFPVL-----V 380 (1081)
T ss_pred ccccchHHHhhh-------hHHHHHHhhhhccccc---------cccccchhhHHHHHHHHhcCcccccchhhh-----c
Confidence 543222111110 0112222222222221 000 00123456777777777777655544 3
Q ss_pred CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
+...|+.|+|++|.+.. +|.. .+.++..|++|+|++|+++. +|..+..++.|++|..-+|+|..
T Consensus 381 ~~~hLKVLhLsyNrL~~---------fpas--~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNS---------FPAS--KLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred cccceeeeeeccccccc---------CCHH--HHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee
Confidence 35677777777777664 2221 11256677777777777773 77777777777777777777765
Q ss_pred hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
+|- +..++.|+.+|++.|+|+... ++++... ++|++||++||.
T Consensus 445 ------fPe----~~~l~qL~~lDlS~N~L~~~~---l~~~~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 ------FPE----LAQLPQLKVLDLSCNNLSEVT---LPEALPS--PNLKYLDLSGNT 487 (1081)
T ss_pred ------chh----hhhcCcceEEecccchhhhhh---hhhhCCC--cccceeeccCCc
Confidence 552 445577777777777776642 3334332 447777777775
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.5e-14 Score=125.65 Aligned_cols=186 Identities=23% Similarity=0.228 Sum_probs=133.8
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCC-CCCCCCch
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~l~~~~~~ 266 (453)
+.||.||||...++.. ....+...|.+|+.|.|.++++.+.....+++ +.+|+.|+++.+ ++++.
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~n--- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTEN--- 250 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccchh---
Confidence 5689999988765433 23445778889999999999999888888887 588999999866 66663
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC--CCCcccccCcCchHHhhcCCCCCC
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGKSLQ 344 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~~~~ 344 (453)
++.-.+.+|+.|..|+|+.|.+....+..++..+ ..+|..|+|+++. +... .+. .+. +.|+
T Consensus 251 ----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl~~s-------h~~-tL~--~rcp 313 (419)
T KOG2120|consen 251 ----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNLQKS-------HLS-TLV--RRCP 313 (419)
T ss_pred ----HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhhhhh-------HHH-HHH--HhCC
Confidence 3445567889999999999987766666665543 5678999999885 3221 121 222 2788
Q ss_pred cccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930 345 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 415 (453)
Q Consensus 345 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 415 (453)
.|..|||++| .+++ .....+...+.|++|.++.|..-+ |.-.-.+...+.|.+|+..+|-
T Consensus 314 ~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~-------p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDII-------PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCC-------hHHeeeeccCcceEEEEecccc
Confidence 9999999998 5666 356667788899999999886432 1111225666889999998883
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=7.5e-15 Score=149.79 Aligned_cols=204 Identities=23% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
.+|+.+++++|.+.... .+...+.+|+.++..+|.+. ..+..+.. ..+|+.|++..|.+..
T Consensus 241 ~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~-~lp~ri~~--------~~~L~~l~~~~nel~y----- 301 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLV-ALPLRISR--------ITSLVSLSAAYNELEY----- 301 (1081)
T ss_pred ccceeeecchhhhhcch-----HHHHhcccceEecccchhHH-hhHHHHhh--------hhhHHHHHhhhhhhhh-----
Confidence 67888888887754432 33556778888888888774 33333333 2667777777776654
Q ss_pred hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHh---------------------hCCCCCCEEEcCCCCCCCccc
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL---------------------EASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~---------------------~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
++..+...++|++|+|+.|++.. .|......+- ..++.|+.|.+.+|.+++.
T Consensus 302 ----ip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-- 374 (1081)
T KOG0618|consen 302 ----IPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS-- 374 (1081)
T ss_pred ----CCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc--
Confidence 66677778899999999998865 4433221110 0123366667777777763
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
.+..+.+..+|++|+|++|+++. +| ..+.+++.|++|+||+|+++. +| .....++.
T Consensus 375 ---------c~p~l~~~~hLKVLhLsyNrL~~-----fpas~~~kle~LeeL~LSGNkL~~------Lp---~tva~~~~ 431 (1081)
T KOG0618|consen 375 ---------CFPVLVNFKHLKVLHLSYNRLNS-----FPASKLRKLEELEELNLSGNKLTT------LP---DTVANLGR 431 (1081)
T ss_pred ---------chhhhccccceeeeeeccccccc-----CCHHHHhchHHhHHHhcccchhhh------hh---HHHHhhhh
Confidence 22333366788999999998885 33 356678888899999998887 66 66777788
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
|++|...+|+|.. ++ .+..++ .|+.+|+|+|+|+.
T Consensus 432 L~tL~ahsN~l~~-----fP-e~~~l~-qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS-----FP-ELAQLP-QLKVLDLSCNNLSE 466 (1081)
T ss_pred hHHHhhcCCceee-----ch-hhhhcC-cceEEecccchhhh
Confidence 9999999998887 56 445534 49999999999875
No 23
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.40 E-value=3.5e-14 Score=141.80 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=187.1
Q ss_pred ccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhH
Q 012930 218 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDF 296 (453)
Q Consensus 218 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~ 296 (453)
+..+.|.+|.+.+.+...+++++... ..|+.|++++|.+.+.++. .+...+... +.++.|++..|.+++.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~----~~L~~L~l~~n~l~~~g~~----~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL----PTLGQLDLSGNNLGDEGAR----LLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc----ccHhHhhcccCCCccHhHH----HHHhhcccchHHHHHHHhhcccccccc
Confidence 88899999999999999999999985 8899999999999987776 677777776 78999999999999999
Q ss_pred HHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC-CCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC-c
Q 012930 297 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-L 374 (453)
Q Consensus 297 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L 374 (453)
...+.+.+.. ...++.++++.|.+.. .+...++..+.. +....++++|++.+|.+++.+++.+..++...++ +
T Consensus 161 ~~~l~~~L~~-~~~l~~l~l~~n~l~~----~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~ 235 (478)
T KOG4308|consen 161 AAPLAAVLEK-NEHLTELDLSLNGLIE----LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL 235 (478)
T ss_pred hHHHHHHHhc-ccchhHHHHHhcccch----hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence 9999999877 6999999999999874 333334455553 2346789999999999999999999999998887 8
Q ss_pred cEEeCCCCCCChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 375 EILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
+.|+++.|.+.|.|++.+.|.+ ... +.++.++++.|.|++.|+..+++.+... +.++.++++.|.+++.+.
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~l----~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPCL----SVLSETLRVLDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHHh----cccchhhhhhhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCccccHHH
Confidence 8899999999999999999864 333 7889999999999999999999999995 579999999999998754
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=3.6e-14 Score=132.27 Aligned_cols=240 Identities=17% Similarity=0.114 Sum_probs=157.2
Q ss_pred ccccceeccccccchHHHhhhhc-CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhh
Q 012930 164 GHYARCLRLQNALCVEETCQLLR-ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLC 241 (453)
Q Consensus 164 ~~~l~~l~L~~~~~~~~~~~l~~-~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~ 241 (453)
+.....++|..|.++.+|...++ ..+|+.||||+|.++ .+.+..+.+++.|.+|-+.+ |+|++..-.++..
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g--- 138 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG--- 138 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh---
Confidence 34567788999999998877655 599999999999944 44455577778888887766 8999877777765
Q ss_pred ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCC
Q 012930 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 321 (453)
Q Consensus 242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l 321 (453)
+..++.|.+.-|++.- ....++..+++|..|.+.+|.+.. |+++-+..+..++.+.+..|.+
T Consensus 139 -----L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 139 -----LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred -----HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcc
Confidence 4778888888888876 677888899999999999987644 4443344567777777777762
Q ss_pred -CCc-----------ccc-c------------------------CcC--chHHhh------------cCCCCCCcccEEE
Q 012930 322 -GGW-----------LSK-Y------------------------DRS--GPLFSL------------GAGKSLQSLRLLN 350 (453)
Q Consensus 322 -~~~-----------~~~-~------------------------~~~--~l~~~l------------~~~~~~~~L~~L~ 350 (453)
.+. .+. + .+. .++..+ ..++.+++|+.|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 110 000 0 000 010000 0123556777777
Q ss_pred ecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhc
Q 012930 351 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 430 (453)
Q Consensus 351 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 430 (453)
|++|+|+. .-..+|.....+++|.|..|+|.. +.. ..+..+..|+.|+|.+|+||.. .+.++..
T Consensus 281 lsnN~i~~----i~~~aFe~~a~l~eL~L~~N~l~~------v~~--~~f~~ls~L~tL~L~~N~it~~----~~~aF~~ 344 (498)
T KOG4237|consen 281 LSNNKITR----IEDGAFEGAAELQELYLTRNKLEF------VSS--GMFQGLSGLKTLSLYDNQITTV----APGAFQT 344 (498)
T ss_pred cCCCccch----hhhhhhcchhhhhhhhcCcchHHH------HHH--HhhhccccceeeeecCCeeEEE----ecccccc
Confidence 77777775 234466677777777777777654 221 3355667777777777777765 3344444
Q ss_pred CCCCCcEEECcCCCC
Q 012930 431 LRRPPTSLSIADNNL 445 (453)
Q Consensus 431 ~~~~L~~L~Ls~N~l 445 (453)
+ .+|.+|.+-.|++
T Consensus 345 ~-~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 345 L-FSLSTLNLLSNPF 358 (498)
T ss_pred c-ceeeeeehccCcc
Confidence 2 3467777766654
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=3.4e-13 Score=141.03 Aligned_cols=154 Identities=16% Similarity=0.074 Sum_probs=90.4
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.|.+.+|.+..++. ..++|++|++++|+++.... ..++|+.|++++|.++... . +
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp-~-l--------- 280 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLP-A-L--------- 280 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhh-h-c---------
Confidence 46666677666665543 23677777777777553211 2356777777777665321 1 1
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
..+|+.|++++|+++. ++. ..++|+.|+|++|++.. .+. + ..+|+.|++++|.+++
T Consensus 281 -p~~L~~L~Ls~N~Lt~---------LP~---~p~~L~~LdLS~N~L~~-Lp~-l-------p~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 281 -PSGLCKLWIFGNQLTS---------LPV---LPPGLQELSVSDNQLAS-LPA-L-------PSELCKLWAYNNQLTS-- 336 (788)
T ss_pred -hhhcCEEECcCCcccc---------ccc---cccccceeECCCCcccc-CCC-C-------cccccccccccCcccc--
Confidence 2456777777777765 222 23568888888887765 222 1 2467777888887764
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
+|. + ..+|+.|+|++|+|+. +|.. .++|+.|++++|.|+.
T Consensus 337 -------LP~-l-----p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 337 -------LPT-L-----PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred -------ccc-c-----ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 221 1 1467888888888775 3321 2344555555555543
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=6.8e-15 Score=122.17 Aligned_cols=157 Identities=24% Similarity=0.284 Sum_probs=95.1
Q ss_pred cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930 214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 293 (453)
Q Consensus 214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~ 293 (453)
++.+++.|.|+||+++ ..+..+++ +.+|+.|++.+|++.+ ++..+++++.|+.|++.-|++.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~--------l~nlevln~~nnqie~---------lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE--------LKNLEVLNLSNNQIEE---------LPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH--------hhhhhhhhcccchhhh---------cChhhhhchhhhheecchhhhh
Confidence 4456667777777776 45666665 4666777777776655 6666666777777777666554
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 373 (453)
- .|+.+ ...+.|+.|||++|++... .+|..+- .++.|+.|.|++|.+. .+|..++.+.+
T Consensus 93 ~-lprgf-----gs~p~levldltynnl~e~-------~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~ 151 (264)
T KOG0617|consen 93 I-LPRGF-----GSFPALEVLDLTYNNLNEN-------SLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTN 151 (264)
T ss_pred c-Ccccc-----CCCchhhhhhccccccccc-------cCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcc
Confidence 3 34433 2346667777776666532 1223332 3456666666666555 46666666677
Q ss_pred ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
|+.|.++.|.+-. +| ..++.+..|++|++.+|.++.
T Consensus 152 lqil~lrdndll~------lp---keig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 152 LQILSLRDNDLLS------LP---KEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eeEEeeccCchhh------Cc---HHHHHHHHHHHHhcccceeee
Confidence 7777776666544 44 445555666667777776655
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.5e-13 Score=126.57 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=45.9
Q ss_pred hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCC
Q 012930 183 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 262 (453)
Q Consensus 183 ~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~ 262 (453)
....+++++.||||+|-+.... . ...+...+|+|+.|+|+.|++....-...-.. ..+|+.|.++.|+++.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~-~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-------l~~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWF-P-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-------LSHLKQLVLNSCGLSW 211 (505)
T ss_pred hhhhCCcceeecchhhhHHhHH-H-HHHHHHhcccchhcccccccccCCccccchhh-------hhhhheEEeccCCCCH
Confidence 3445566677777666543321 1 22334566667777776665542211111111 2445556666665554
Q ss_pred CCchhhHHHHHHhhcCCCCccEEEcCCC
Q 012930 263 NCPSSVVVELVSFLSSGRSLCSLKLRHC 290 (453)
Q Consensus 263 ~~~~~i~~~l~~~l~~~~~L~~L~L~~n 290 (453)
. .+...+..+|+|+.|+|.+|
T Consensus 212 k-------~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 212 K-------DVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred H-------HHHHHHHhCCcHHHhhhhcc
Confidence 1 23334445555666666555
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=4.6e-12 Score=141.54 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=58.9
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.|++.++....+|..+ ...+|++|+++++.+...+.. ...+++|+.|+|++|......+. ++.
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~------- 655 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LSM------- 655 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-ccc-------
Confidence 5777777777666666544 456777777777765443322 23566777777776632211111 211
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCC
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 291 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~ 291 (453)
+++|++|++++|.... .++..+..+++|+.|++++|.
T Consensus 656 -l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 656 -ATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred -CCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCCC
Confidence 3566677776665433 355555566666666666653
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=3.5e-14 Score=117.99 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=124.0
Q ss_pred hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCC
Q 012930 182 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 261 (453)
Q Consensus 182 ~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~ 261 (453)
..++.+.++..|.||+|++....+.+ ..+.+|+.|++.+|+|.+. +..+.. +++|+.|++.-|++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppni-----a~l~nlevln~~nnqie~l-p~~iss--------l~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNI-----AELKNLEVLNLSNNQIEEL-PTSISS--------LPKLRILNVGMNRLN 92 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcH-----HHhhhhhhhhcccchhhhc-Chhhhh--------chhhhheecchhhhh
Confidence 34566788889999999976654443 3567899999999988753 334433 578888888888876
Q ss_pred CCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhH-HHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCC
Q 012930 262 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF-GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 340 (453)
Q Consensus 262 ~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~ 340 (453)
. ++..++..+.|+.|||.+|++.... |..++. +..|+-|.|+.|.+.- +|..++
T Consensus 93 ~---------lprgfgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~---------lp~dvg-- 147 (264)
T KOG0617|consen 93 I---------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEI---------LPPDVG-- 147 (264)
T ss_pred c---------CccccCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCccc---------CChhhh--
Confidence 5 7888889999999999999886533 332322 4678888999998764 667788
Q ss_pred CCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 341 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 341 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
.+++|++|.++.|.+-. +|..++.+..|++|++.+|+++-
T Consensus 148 -~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 148 -KLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -hhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeee
Confidence 67899999999998874 89999999999999999999875
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=2.1e-11 Score=136.27 Aligned_cols=230 Identities=20% Similarity=0.221 Sum_probs=154.2
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.+..|++.++.+..++..+..+++|+.|+|+++......+. +..+++|++|+|++|......+..+..
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~------- 679 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQY------- 679 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhc-------
Confidence 67888999888887777777889999999998752222222 346789999999998655455555544
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+.+|+.|++++|.... .++..+ ++++|+.|++++|......+. ...+|++|++++|.+...-
T Consensus 680 -L~~L~~L~L~~c~~L~--------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--------~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 680 -LNKLEDLDMSRCENLE--------ILPTGI-NLKSLYRLNLSGCSRLKSFPD--------ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred -cCCCCEEeCCCCCCcC--------ccCCcC-CCCCCCEEeCCCCCCcccccc--------ccCCcCeeecCCCcccccc
Confidence 5889999999875444 244333 678999999999965443432 1478999999999876411
Q ss_pred cccCcCchH-------------HhhcC-----CCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CCh
Q 012930 326 SKYDRSGPL-------------FSLGA-----GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IED 386 (453)
Q Consensus 326 ~~~~~~~l~-------------~~l~~-----~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~ 386 (453)
.......+. ..+.. ....++|+.|+|++|.... .+|..+..+++|+.|++++|. ++.
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCCCcCe
Confidence 100000000 00000 0023578889999886444 478889999999999999864 554
Q ss_pred hHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 387 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+| ... .+++|++|++++|..-.. ++. ...+|+.|+|++|.|+.
T Consensus 818 ------LP---~~~-~L~sL~~L~Ls~c~~L~~----~p~----~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 818 ------LP---TGI-NLESLESLDLSGCSRLRT----FPD----ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred ------eC---CCC-CccccCEEECCCCCcccc----ccc----cccccCEeECCCCCCcc
Confidence 55 222 568999999999853221 222 23459999999999874
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.8e-12 Score=117.65 Aligned_cols=222 Identities=21% Similarity=0.183 Sum_probs=151.9
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 264 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~ 264 (453)
+..+|++..|.++........ .....+++++.|||++|-+.. ..+..+++. +++|+.|+++.|.+..-.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-------Lp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ-------LPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHh-------cccchhcccccccccCCc
Confidence 447788888877763332221 346789999999999997764 444556665 688999999999876521
Q ss_pred chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930 265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 344 (453)
Q Consensus 265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~ 344 (453)
-.... ..+++|+.|.|+.|.++...+..+... .++|+.|+|+.|.....- ..+.. -++
T Consensus 189 ~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~----fPsl~~L~L~~N~~~~~~------~~~~~-----i~~ 246 (505)
T KOG3207|consen 189 SSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLT----FPSLEVLYLEANEIILIK------ATSTK-----ILQ 246 (505)
T ss_pred cccch-------hhhhhhheEEeccCCCCHHHHHHHHHh----CCcHHHhhhhccccccee------cchhh-----hhh
Confidence 11111 145789999999999998877776553 799999999999522110 01122 347
Q ss_pred cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930 345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 424 (453)
.|++|||++|++-+. ........++.|+.|+++.+.|++-..... .. ..-....++|++|++..|+|.+.. .
T Consensus 247 ~L~~LdLs~N~li~~---~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s-~~kt~~f~kL~~L~i~~N~I~~w~---s 318 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDF---DQGYKVGTLPGLNQLNLSSTGIASIAEPDV-ES-LDKTHTFPKLEYLNISENNIRDWR---S 318 (505)
T ss_pred HHhhccccCCccccc---ccccccccccchhhhhccccCcchhcCCCc-cc-hhhhcccccceeeecccCcccccc---c
Confidence 899999999987763 233567789999999999998876210000 00 011345589999999999996631 3
Q ss_pred HHHHhcCCCCCcEEECcCCCCCcc
Q 012930 425 LDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 425 ~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
...+.. -.+|+.|.+.+|.|.-+
T Consensus 319 l~~l~~-l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 319 LNHLRT-LENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhc-cchhhhhhccccccccc
Confidence 445555 34588888888888654
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-11 Score=116.00 Aligned_cols=213 Identities=20% Similarity=0.183 Sum_probs=145.3
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccC-CCCCCCCch
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~l~~~~~~ 266 (453)
..-.+++|..|++....++. ++.+++|++|+|++|.|+...+.++.. +.++.+|-+.+ |+|++
T Consensus 67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~---- 130 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD---- 130 (498)
T ss_pred CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh----
Confidence 45677888888866554444 778899999999999999999999866 36666665555 88887
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 346 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L 346 (453)
.-...|.++.+|+.|.+..|++.-.....+ ..++++..|.+-.|.+...- . +.+..+..+
T Consensus 131 ----l~k~~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~---------~--~tf~~l~~i 190 (498)
T KOG4237|consen 131 ----LPKGAFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQSIC---------K--GTFQGLAAI 190 (498)
T ss_pred ----hhhhHhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhhhc---------c--ccccchhcc
Confidence 445677889999999999998876333333 33688999999888765311 0 111122333
Q ss_pred cEEEecCCCC------------------ChhhH-------------------------HH---------------HHHHH
Q 012930 347 RLLNLRGNNL------------------CKADA-------------------------RD---------------LGSAL 368 (453)
Q Consensus 347 ~~L~L~~n~l------------------~~~~~-------------------------~~---------------l~~~l 368 (453)
+++.+..|.+ .-.|+ +. -...|
T Consensus 191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence 3333333220 00000 00 12357
Q ss_pred hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 369 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 369 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
..+++|+.|+|++|+|++. -+ .++.....+++|.|..|+|... -...+..+ ..|+.|+|.+|+|+--
T Consensus 271 ~~L~~L~~lnlsnN~i~~i-----~~---~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~l-s~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRI-----ED---GAFEGAAELQELYLTRNKLEFV----SSGMFQGL-SGLKTLSLYDNQITTV 337 (498)
T ss_pred hhcccceEeccCCCccchh-----hh---hhhcchhhhhhhhcCcchHHHH----HHHhhhcc-ccceeeeecCCeeEEE
Confidence 7899999999999999872 33 5677778999999999998764 23334443 4499999999999754
Q ss_pred c
Q 012930 449 C 449 (453)
Q Consensus 449 ~ 449 (453)
.
T Consensus 338 ~ 338 (498)
T KOG4237|consen 338 A 338 (498)
T ss_pred e
Confidence 3
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=6.7e-11 Score=102.20 Aligned_cols=130 Identities=26% Similarity=0.283 Sum_probs=46.5
Q ss_pred CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC
Q 012930 278 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 357 (453)
Q Consensus 278 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~ 357 (453)
+...+++|+|++|.++. .+.+ -..+.+|+.|++++|.|+.. ..+. .++.|++|++++|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L----~~~l~~L~~L~Ls~N~I~~l----------~~l~---~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENL----GATLDKLEVLDLSNNQITKL----------EGLP---GLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---------------------S------TT-TT--EEE-TTS--S------------TT-------TT--EEE--SS---
T ss_pred ccccccccccccccccc--ccch----hhhhcCCCEEECCCCCCccc----------cCcc---ChhhhhhcccCCCCCC
Confidence 34567888888887764 1222 22356888888888888741 2233 5688888899999888
Q ss_pred hhhHHHHHHHH-hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCc
Q 012930 358 KADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPT 436 (453)
Q Consensus 358 ~~~~~~l~~~l-~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~ 436 (453)
+ +.+.+ ..+|+|++|++++|+|.+-+ .+ ..+..+++|+.|+|.+|+++...-.. ...+..+ ++|+
T Consensus 78 ~-----i~~~l~~~lp~L~~L~L~~N~I~~l~--~l-----~~L~~l~~L~~L~L~~NPv~~~~~YR-~~vi~~l-P~Lk 143 (175)
T PF14580_consen 78 S-----ISEGLDKNLPNLQELYLSNNKISDLN--EL-----EPLSSLPKLRVLSLEGNPVCEKKNYR-LFVIYKL-PSLK 143 (175)
T ss_dssp S------CHHHHHH-TT--EEE-TTS---SCC--CC-----GGGGG-TT--EEE-TT-GGGGSTTHH-HHHHHH--TT-S
T ss_pred c-----cccchHHhCCcCCEEECcCCcCCChH--Hh-----HHHHcCCCcceeeccCCcccchhhHH-HHHHHHc-Chhh
Confidence 6 43333 35788889999988887621 11 33566788889999998887643221 2233443 3488
Q ss_pred EEEC
Q 012930 437 SLSI 440 (453)
Q Consensus 437 ~L~L 440 (453)
.||-
T Consensus 144 ~LD~ 147 (175)
T PF14580_consen 144 VLDG 147 (175)
T ss_dssp EETT
T ss_pred eeCC
Confidence 8874
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=9.4e-11 Score=105.93 Aligned_cols=160 Identities=26% Similarity=0.351 Sum_probs=84.4
Q ss_pred CccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChh
Q 012930 217 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRD 295 (453)
Q Consensus 217 ~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~ 295 (453)
.|++|||+...|+...+..+... |.+|+.|++.++++.+ .++..++.+.+|+.|+|+.+ .++..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccchh
Confidence 46666666666665555444332 5666666666666666 56666666666666666655 35544
Q ss_pred HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC--CCChhhHHHHHHHHhCCCC
Q 012930 296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPN 373 (453)
Q Consensus 296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~ 373 (453)
+++.+ +.+++.|..|+|+.|.+.... ...+...++ ++|+.|+|+++ ++.+. ++......+|+
T Consensus 251 ~~~ll----~~scs~L~~LNlsWc~l~~~~----Vtv~V~his-----e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~ 314 (419)
T KOG2120|consen 251 ALQLL----LSSCSRLDELNLSWCFLFTEK----VTVAVAHIS-----ETLTQLNLSGYRRNLQKS---HLSTLVRRCPN 314 (419)
T ss_pred HHHHH----HHhhhhHhhcCchHhhccchh----hhHHHhhhc-----hhhhhhhhhhhHhhhhhh---HHHHHHHhCCc
Confidence 44433 334566666666666554311 111112222 45666666666 34433 23333446666
Q ss_pred ccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930 374 LEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCE 415 (453)
Q Consensus 374 L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 415 (453)
|.+||||+| .+++.-+.+ +...+.|++|.++.|.
T Consensus 315 l~~LDLSD~v~l~~~~~~~--------~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQE--------FFKFNYLQHLSLSRCY 349 (419)
T ss_pred eeeeccccccccCchHHHH--------HHhcchheeeehhhhc
Confidence 666666653 444432222 2233566666666664
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=2.9e-11 Score=117.93 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=81.7
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
..|+.+.+..|.+.. ++..+.++..|..|+|+.|+++- .|..+|. .-|+.|-+++|+++.
T Consensus 98 ~~Le~liLy~n~~r~---------ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~------lpLkvli~sNNkl~~---- 157 (722)
T KOG0532|consen 98 VSLESLILYHNCIRT---------IPEAICNLEALTFLDLSSNQLSH-LPDGLCD------LPLKVLIVSNNKLTS---- 157 (722)
T ss_pred HHHHHHHHHhcccee---------cchhhhhhhHHHHhhhccchhhc-CChhhhc------CcceeEEEecCcccc----
Confidence 334555555555443 44555555666666666665544 4444433 345666666666553
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
+|..++ ...+|..||.+.|.+.. ++..++.+.+|+.|+++.|++.+ +| +.+.. -.|.
T Consensus 158 -----lp~~ig---~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~------lp---~El~~-LpLi 214 (722)
T KOG0532|consen 158 -----LPEEIG---LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED------LP---EELCS-LPLI 214 (722)
T ss_pred -----CCcccc---cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh------CC---HHHhC-Ccee
Confidence 344444 34555566666665553 55555555666666666665554 44 33332 2455
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+||+++|+++. ++-.+.++ ++|++|-|.+|.++++
T Consensus 215 ~lDfScNkis~-----iPv~fr~m-~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 215 RLDFSCNKISY-----LPVDFRKM-RHLQVLQLENNPLQSP 249 (722)
T ss_pred eeecccCceee-----cchhhhhh-hhheeeeeccCCCCCC
Confidence 66666666555 45555553 4466666666665553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=3.2e-10 Score=98.01 Aligned_cols=132 Identities=25% Similarity=0.289 Sum_probs=46.8
Q ss_pred cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930 214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 293 (453)
Q Consensus 214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~ 293 (453)
+...+++|+|++|.|+.. +.+... +.+|+.|++++|.++. + +.+..++.|+.|++++|.++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~-------l~~L~~L~Ls~N~I~~---------l-~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGAT-------LDKLEVLDLSNNQITK---------L-EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---------------------S--TT--------TT--EEE-TTS--S------------TT----TT--EEE--SS---
T ss_pred cccccccccccccccccc--cchhhh-------hcCCCEEECCCCCCcc---------c-cCccChhhhhhcccCCCCCC
Confidence 334667777777777642 222211 3567888888888775 2 23456788888888888887
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 373 (453)
.-. ..+. ..+++|++|++++|+|.+.. .+..+..+++|++|+|.+|.+++..- .-...+..+|+
T Consensus 78 ~i~-~~l~----~~lp~L~~L~L~~N~I~~l~----------~l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~ 141 (175)
T PF14580_consen 78 SIS-EGLD----KNLPNLQELYLSNNKISDLN----------ELEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPS 141 (175)
T ss_dssp S-C-HHHH----HH-TT--EEE-TTS---SCC----------CCGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT
T ss_pred ccc-cchH----HhCCcCCEEECcCCcCCChH----------HhHHHHcCCCcceeeccCCcccchhh-HHHHHHHHcCh
Confidence 622 2221 22578888888888887532 12333367888888888888775421 22345667888
Q ss_pred ccEEeCC
Q 012930 374 LEILDIS 380 (453)
Q Consensus 374 L~~L~Ls 380 (453)
|+.||-.
T Consensus 142 Lk~LD~~ 148 (175)
T PF14580_consen 142 LKVLDGQ 148 (175)
T ss_dssp -SEETTE
T ss_pred hheeCCE
Confidence 8888743
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=2.7e-09 Score=100.83 Aligned_cols=239 Identities=24% Similarity=0.284 Sum_probs=133.9
Q ss_pred ccceeccccccchH---HHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhh
Q 012930 166 YARCLRLQNALCVE---ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLC 241 (453)
Q Consensus 166 ~l~~l~L~~~~~~~---~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~ 241 (453)
+++.|.+.++.-.+ .......|++|+++++..|. .........+...+++|++|++++| .|++.+++.+..+
T Consensus 165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG-- 240 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG-- 240 (483)
T ss_pred chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc--
Confidence 45555555543221 22223467889999998765 2234445667888999999999999 8888777777654
Q ss_pred ccccCCcceeEEEccCC---------------------------CCCCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CC
Q 012930 242 SKRKRIHKIENLSIDIS---------------------------SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LD 293 (453)
Q Consensus 242 ~~~~~~~~L~~L~L~~n---------------------------~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~ 293 (453)
+..++.+.+.+| .++++ .+...-..+..|+.|+.+++. ++
T Consensus 241 -----~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-------~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 241 -----CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-------DLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred -----chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-------HHHHHhhhhhHhhhhcccCCCCCc
Confidence 233344433332 22321 222222344555555555542 22
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP 372 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 372 (453)
+. ...+|..+..+|+.|.++.|+ +++.+. ..++. ++..|+.+++-.|.....+ .+...-.+++
T Consensus 309 d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~f--------t~l~r--n~~~Le~l~~e~~~~~~d~--tL~sls~~C~ 372 (483)
T KOG4341|consen 309 DE----VLWALGQHCHNLQVLELSGCQQFSDRGF--------TMLGR--NCPHLERLDLEECGLITDG--TLASLSRNCP 372 (483)
T ss_pred hH----HHHHHhcCCCceEEEeccccchhhhhhh--------hhhhc--CChhhhhhcccccceehhh--hHhhhccCCc
Confidence 22 223334445666666666665 444322 22222 4566666666666433322 3444445677
Q ss_pred CccEEeCCCC-CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 373 NLEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 373 ~L~~L~Ls~N-~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
.|+.|.++++ .|+|+|++++- ........|+.+.|++|..+.+ +..+.+.. ++.|+.+++-+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~-c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITD---ATLEHLSI-CRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchH---HHHHHHhh-Ccccceeeeechh
Confidence 7777777776 46777766663 2234446777777777764433 25555655 4567777776654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=3.6e-09 Score=105.36 Aligned_cols=175 Identities=26% Similarity=0.302 Sum_probs=91.2
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCc-ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 294 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~-~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~ 294 (453)
+.++.|++.+|.++...+..-. .. +|+.|++++|.+.. ++..+..+++|+.|++++|++.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~---------~~~nL~~L~l~~N~i~~---------l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGL---------LKSNLKELDLSDNKIES---------LPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred cceeEEecCCcccccCcccccc---------chhhcccccccccchhh---------hhhhhhccccccccccCCchhhh
Confidence 4566666666655543222110 12 56666666666554 33445566666666666666655
Q ss_pred hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930 295 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 374 (453)
Q Consensus 295 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 374 (453)
.+.... ..+.|+.|++++|++.+ +|..+. ....|++|.+++|.+.. ++..+.....+
T Consensus 178 -l~~~~~-----~~~~L~~L~ls~N~i~~---------l~~~~~---~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l 234 (394)
T COG4886 178 -LPKLLS-----NLSNLNNLDLSGNKISD---------LPPEIE---LLSALEELDLSNNSIIE-----LLSSLSNLKNL 234 (394)
T ss_pred -hhhhhh-----hhhhhhheeccCCcccc---------Cchhhh---hhhhhhhhhhcCCccee-----cchhhhhcccc
Confidence 222211 13566666666666654 333322 22346666666664322 34445555566
Q ss_pred cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
..|.+++|++.+ .+ .....++.+++|++++|+++.. .. +.. -.+++.|++++|.+.+
T Consensus 235 ~~l~l~~n~~~~------~~---~~~~~l~~l~~L~~s~n~i~~i-----~~-~~~-~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 235 SGLELSNNKLED------LP---ESIGNLSNLETLDLSNNQISSI-----SS-LGS-LTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccCCceeee------cc---chhccccccceecccccccccc-----cc-ccc-cCccCEEeccCccccc
Confidence 666666666554 12 2244445566666666666652 21 333 2346666666665544
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.2e-09 Score=99.00 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=72.4
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
.|+++++++|.|+. +-+++.-.|.++.|++++|.+... ..++ .+++|+.||||+|.++.
T Consensus 285 ~LtelDLS~N~I~~---------iDESvKL~Pkir~L~lS~N~i~~v--~nLa-----~L~~L~~LDLS~N~Ls~----- 343 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ---------IDESVKLAPKLRRLILSQNRIRTV--QNLA-----ELPQLQLLDLSGNLLAE----- 343 (490)
T ss_pred hhhhccccccchhh---------hhhhhhhccceeEEeccccceeee--hhhh-----hcccceEeecccchhHh-----
Confidence 35666666666654 444444556667777777666431 1121 24666777777766552
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
.-++-..+.++++|+|++|.|.+ + ..+..+.+|..||+++|+|.. +... ..+++++-|+.
T Consensus 344 -------~~Gwh~KLGNIKtL~La~N~iE~-----L-SGL~KLYSLvnLDl~~N~Ie~------ldeV-~~IG~LPCLE~ 403 (490)
T KOG1259|consen 344 -------CVGWHLKLGNIKTLKLAQNKIET-----L-SGLRKLYSLVNLDLSSNQIEE------LDEV-NHIGNLPCLET 403 (490)
T ss_pred -------hhhhHhhhcCEeeeehhhhhHhh-----h-hhhHhhhhheeccccccchhh------HHHh-cccccccHHHH
Confidence 11222245566666676666654 2 234555666667777776654 2222 44566666666
Q ss_pred EEccCCCCCh
Q 012930 409 LYLENCELSG 418 (453)
Q Consensus 409 L~L~~n~l~~ 418 (453)
+.|.+|.|..
T Consensus 404 l~L~~NPl~~ 413 (490)
T KOG1259|consen 404 LRLTGNPLAG 413 (490)
T ss_pred HhhcCCCccc
Confidence 6666666543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.2e-09 Score=98.88 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=98.0
Q ss_pred CCccEEEcCCCCCCh--hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930 216 ETLASLEFLHCKLSP--SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 293 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~ 293 (453)
..|+++||++|.|+. ++++- .+.++.|++++|.+.. +. .+..+++|++|||++|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL-----------~Pkir~L~lS~N~i~~---------v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKL-----------APKLRRLILSQNRIRT---------VQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchhhhhhhhhh-----------ccceeEEeccccceee---------eh-hhhhcccceEeecccchhH
Confidence 468899999998863 33332 3789999999999987 22 2668899999999999886
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 373 (453)
. +.+.-..+.++++|.|++|.|.+- ..++ .+-+|..||+++|+|..-+ -...++++|.
T Consensus 343 ~------~~Gwh~KLGNIKtL~La~N~iE~L----------SGL~---KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPC 400 (490)
T KOG1259|consen 343 E------CVGWHLKLGNIKTLKLAQNKIETL----------SGLR---KLYSLVNLDLSSNQIEELD---EVNHIGNLPC 400 (490)
T ss_pred h------hhhhHhhhcCEeeeehhhhhHhhh----------hhhH---hhhhheeccccccchhhHH---HhcccccccH
Confidence 5 222233468999999999998741 2334 5678999999999998632 2356889999
Q ss_pred ccEEeCCCCCCCh
Q 012930 374 LEILDISDNTIED 386 (453)
Q Consensus 374 L~~L~Ls~N~i~~ 386 (453)
|+++.|.+|++..
T Consensus 401 LE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 401 LETLRLTGNPLAG 413 (490)
T ss_pred HHHHhhcCCCccc
Confidence 9999999998864
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=7.2e-10 Score=108.39 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=147.3
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
+....+++.+...+++..+..+..|+.+.|..|.+...... ..++..|+.|+|+.|+++. .+..+|.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS~-lp~~lC~------- 142 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLSH-LPDGLCD------- 142 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhhc-CChhhhc-------
Confidence 34556777787777787777777888888888875443332 3466789999999998884 4555553
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
..|+.|.+++|+++. ++..++..++|.+|+.+.|.+.. .+..++. +.+|+.|.+..|++.+
T Consensus 143 --lpLkvli~sNNkl~~---------lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~-- 203 (722)
T KOG0532|consen 143 --LPLKVLIVSNNKLTS---------LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLED-- 203 (722)
T ss_pred --CcceeEEEecCcccc---------CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhh--
Confidence 679999999999886 77778888899999999998876 5666544 5789999999999876
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+|..+.. -.|..||++.|++.. ||-.|.+|..|++|-|.+|.++.--+.. ...+...-
T Consensus 204 -------lp~El~~----LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqI------C~kGkVHI 261 (722)
T KOG0532|consen 204 -------LPEELCS----LPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQI------CEKGKVHI 261 (722)
T ss_pred -------CCHHHhC----CceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHH------Hhccceee
Confidence 6677763 368999999999994 8999999999999999999998632221 12333345
Q ss_pred ccEEEccCCC
Q 012930 406 LVELYLENCE 415 (453)
Q Consensus 406 L~~L~L~~n~ 415 (453)
.++|+..-|+
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 5677776664
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.6e-08 Score=100.70 Aligned_cols=193 Identities=28% Similarity=0.301 Sum_probs=115.4
Q ss_pred eccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcC-CCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930 170 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNS-ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 248 (453)
Q Consensus 170 l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~ 248 (453)
+.+..+....-...+...+.++.|++.+|.+...... .... ++|++|++++|.+.... ..+.. ++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~~l~-~~~~~--------l~ 163 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIESLP-SPLRN--------LP 163 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchhhhh-hhhhc--------cc
Confidence 3444444322233333446677777777764433221 1222 26777888887776542 11111 47
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
+|+.|++++|++++ ++......+.|+.|++++|++.+ .+..+ .....|++|.+++|.+..
T Consensus 164 ~L~~L~l~~N~l~~---------l~~~~~~~~~L~~L~ls~N~i~~-l~~~~-----~~~~~L~~l~~~~N~~~~----- 223 (394)
T COG4886 164 NLKNLDLSFNDLSD---------LPKLLSNLSNLNNLDLSGNKISD-LPPEI-----ELLSALEELDLSNNSIIE----- 223 (394)
T ss_pred cccccccCCchhhh---------hhhhhhhhhhhhheeccCCcccc-Cchhh-----hhhhhhhhhhhcCCccee-----
Confidence 77888888887776 44444466778888888887766 44332 113557888888874221
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
.+..+. .+.++..+.+.+|++.. ++..+..++.++.|++++|.+++ ++. +....+++.
T Consensus 224 ----~~~~~~---~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~------i~~----~~~~~~l~~ 281 (394)
T COG4886 224 ----LLSSLS---NLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISS------ISS----LGSLTNLRE 281 (394)
T ss_pred ----cchhhh---hcccccccccCCceeee-----ccchhccccccceeccccccccc------ccc----ccccCccCE
Confidence 112333 45666667777777664 35556677778888888888777 432 555677888
Q ss_pred EEccCCCCCh
Q 012930 409 LYLENCELSG 418 (453)
Q Consensus 409 L~L~~n~l~~ 418 (453)
|++++|.++.
T Consensus 282 L~~s~n~~~~ 291 (394)
T COG4886 282 LDLSGNSLSN 291 (394)
T ss_pred EeccCccccc
Confidence 8888776654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=8.2e-08 Score=100.64 Aligned_cols=64 Identities=34% Similarity=0.524 Sum_probs=30.1
Q ss_pred CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.++.. +| ..++.+++|+.|+|++|+++.
T Consensus 441 L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~-----iP---~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 441 LRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS-----IP---ESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC-----Cc---hHHhcCCCCCEEECcCCcccc
Confidence 3445555555554443 3444444555555555555554432 33 334444455555555554443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=2.2e-07 Score=97.41 Aligned_cols=106 Identities=32% Similarity=0.389 Sum_probs=60.9
Q ss_pred eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930 250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329 (453)
Q Consensus 250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 329 (453)
++.|+|++|.+.. .++..+..+++|+.|+|++|.+.+..+..+ ..+++|+.|+|++|.+++..|
T Consensus 420 v~~L~L~~n~L~g--------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~LdLs~N~lsg~iP--- 483 (623)
T PLN03150 420 IDGLGLDNQGLRG--------FIPNDISKLRHLQSINLSGNSIRGNIPPSL-----GSITSLEVLDLSYNSFNGSIP--- 483 (623)
T ss_pred EEEEECCCCCccc--------cCCHHHhCCCCCCEEECCCCcccCcCChHH-----hCCCCCCEEECCCCCCCCCCc---
Confidence 5566666666655 455555566666666666666665555444 235666666666666665433
Q ss_pred cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCC-CCccEEeCCCCC
Q 012930 330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNT 383 (453)
Q Consensus 330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~ 383 (453)
..++ ++++|+.|+|++|+++. .+|..+... .++..+++++|.
T Consensus 484 -----~~l~---~L~~L~~L~Ls~N~l~g----~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 484 -----ESLG---QLTSLRILNLNGNSLSG----RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -----hHHh---cCCCCCEEECcCCcccc----cCChHHhhccccCceEEecCCc
Confidence 4454 45566666666666655 355555432 344556666554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=1.3e-08 Score=102.28 Aligned_cols=156 Identities=26% Similarity=0.293 Sum_probs=102.7
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
.|...+.++|.+.. +-.++.-++.|++|+|+.|++++- ..+ ..++.|++|||++|.+..
T Consensus 165 ~L~~a~fsyN~L~~---------mD~SLqll~ale~LnLshNk~~~v--~~L-----r~l~~LkhLDlsyN~L~~----- 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL---------MDESLQLLPALESLNLSHNKFTKV--DNL-----RRLPKLKHLDLSYNCLRH----- 223 (1096)
T ss_pred hHhhhhcchhhHHh---------HHHHHHHHHHhhhhccchhhhhhh--HHH-----Hhcccccccccccchhcc-----
Confidence 35555666776653 666777789999999999998762 222 337999999999999874
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
+|. ++. .. +.|..|++++|.++. + ..+.++.+|+.||+++|-|.+. ..+-| +..+..|..
T Consensus 224 ----vp~-l~~-~g-c~L~~L~lrnN~l~t-----L-~gie~LksL~~LDlsyNll~~h--seL~p-----LwsLs~L~~ 283 (1096)
T KOG1859|consen 224 ----VPQ-LSM-VG-CKLQLLNLRNNALTT-----L-RGIENLKSLYGLDLSYNLLSEH--SELEP-----LWSLSSLIV 283 (1096)
T ss_pred ----ccc-cch-hh-hhheeeeecccHHHh-----h-hhHHhhhhhhccchhHhhhhcc--hhhhH-----HHHHHHHHH
Confidence 222 111 13 359999999998885 2 3467788999999999988653 33433 444578999
Q ss_pred EEccCCCCChh--hHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 409 LYLENCELSGR--GVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 409 L~L~~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
|+|.+|.+-.. --.+.++.+.. +.-=..+-|.+-.|+
T Consensus 284 L~LeGNPl~c~p~hRaataqYl~~-~~a~~~f~LDgk~l~ 322 (1096)
T KOG1859|consen 284 LWLEGNPLCCAPWHRAATAQYLHK-NSAPVKFKLDGKALG 322 (1096)
T ss_pred HhhcCCccccCHHHHHHHHhHhcc-ccCCcceEecceecc
Confidence 99999987542 22334445543 222233444444443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.8e-07 Score=83.78 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+++..+-+..|.+.+.. -.+.....|++..|+|+.|+|.+ ..++ .++...+.|..|.++++.|.+
T Consensus 199 pnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~ids------wasv-D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNIDS------WASV-DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchh---hcccCCCCCcchhhhhccccccc------HHHH-HHHcCCchhheeeccCCcccc
Confidence 45555555666555431 12234445555566666666654 2221 334455666666666666554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.2e-07 Score=86.10 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930 187 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 266 (453)
Q Consensus 187 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~ 266 (453)
++.++++||.+|.+.. |.+ +.++..++|.|+.|+|++|.+.... +.+ +.+..+|+.|.|++..+.-.
T Consensus 70 ~~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I-~~l-------p~p~~nl~~lVLNgT~L~w~--- 136 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDI-KSL-------PLPLKNLRVLVLNGTGLSWT--- 136 (418)
T ss_pred hhhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCcc-ccC-------cccccceEEEEEcCCCCChh---
Confidence 3666677777766543 222 3344556677777777777665321 111 01135666666666655441
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCC-----CChhHHHHHHHH-------------------HhhCCCCCCEEEcCCCCCC
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCH-----LDRDFGRMVFSS-------------------LLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~-----l~~~~~~~l~~~-------------------L~~~~~~L~~L~Ls~n~l~ 322 (453)
...+++..+|.+++|+++.|. +.+...+.+..+ +..-.+++..+-+..|.+.
T Consensus 137 ----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 137 ----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred ----hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 233444555666666666652 122222111100 0011233444444444433
Q ss_pred CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
+.... .....++.+-.|+|+.|+|.+-+ -.+++..++.|+.|.+++|++.|
T Consensus 213 ~~s~e----------k~se~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 213 TESSE----------KGSEPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhc----------ccCCCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence 21110 01113345556777777777642 23456677777777777777655
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.2e-08 Score=102.72 Aligned_cols=105 Identities=26% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 388 (453)
+.++.|||++|++++. .++. .|+.|++|||+.|.++. +|..-..-..|+.|.+++|.++.
T Consensus 187 ~ale~LnLshNk~~~v----------~~Lr---~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~lrnN~l~t-- 246 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV----------DNLR---RLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNLRNNALTT-- 246 (1096)
T ss_pred HHhhhhccchhhhhhh----------HHHH---hcccccccccccchhcc-----ccccchhhhhheeeeecccHHHh--
Confidence 4556666666665531 2333 45566666666665553 33321112236666666665544
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930 389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 445 (453)
+ ..+.++++|+.||+++|-|.+..--...-.+.. |+.|.|.||.+
T Consensus 247 ----L----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 ----L----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWLEGNPL 291 (1096)
T ss_pred ----h----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhhcCCcc
Confidence 2 223444566666666665544322222222333 55566666654
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=9.2e-08 Score=67.85 Aligned_cols=58 Identities=34% Similarity=0.497 Sum_probs=29.0
Q ss_pred cccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930 345 SLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 415 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 415 (453)
+|++|++++|+++. ++ .++..+++|+.|++++|.|+. ++. .++..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCc
Confidence 34555555555553 22 244455555555555555544 222 344555555555555554
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=4.4e-08 Score=98.01 Aligned_cols=234 Identities=23% Similarity=0.192 Sum_probs=129.4
Q ss_pred ceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCC
Q 012930 168 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 247 (453)
Q Consensus 168 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~ 247 (453)
+.+.+..+........+....+|+.|++.+|.+...... ...+++|++|++++|.|+....-.- +
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~l~~----------l 139 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEGLST----------L 139 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccchhh----------c
Confidence 333345554444334456668888888888885443221 3456788888888888875332221 3
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
+.|+.|++++|.+... ..+..+..|+.+++++|.+.......+ ..+.+++.+++..|.+......
T Consensus 140 ~~L~~L~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred cchhhheeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCCchhcccch
Confidence 5588888888887652 233347788888888888766333101 2357888888888876642110
Q ss_pred cCcCchH------HhhcCCCC---CC--cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHH
Q 012930 328 YDRSGPL------FSLGAGKS---LQ--SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 396 (453)
Q Consensus 328 ~~~~~l~------~~l~~~~~---~~--~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l 396 (453)
.....+. ..+..... .. .|+.+++++|.+.. ++..+.....+..|+++.|++.. .
T Consensus 205 ~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~------~--- 270 (414)
T KOG0531|consen 205 DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISN------L--- 270 (414)
T ss_pred HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-----ccccccccccccccchhhccccc------c---
Confidence 0000000 00010001 11 15666777776664 22445566677777777777655 2
Q ss_pred HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 397 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
..+...+.+..+.+..+.+.......-...... ..+++.+.+..|.+..
T Consensus 271 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 -EGLERLPKLSELWLNDNKLALSEAISQEYITSA-APTLVTLTLELNPIRK 319 (414)
T ss_pred -ccccccchHHHhccCcchhcchhhhhccccccc-cccccccccccCcccc
Confidence 123333556666666666553211111111333 3447777777776654
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=3.5e-06 Score=86.08 Aligned_cols=218 Identities=22% Similarity=0.187 Sum_probs=117.2
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC--CCChhH--HHHHHHHhhccccCCcceeEEEccCCC-C
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC--KLSPSF--VEGICRSLCSKRKRIHKIENLSIDISS-F 260 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~-l 260 (453)
.++.|+.|.+..+....... ...+...++.|++|+++++ .+.... ...+... +++|+.++++.+. +
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-------CRKLKSLDLSGCGLV 256 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhh-------cCCcCccchhhhhcc
Confidence 35777777777665221111 3334557778888888763 222222 2222222 5777888888776 6
Q ss_pred CCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCCCCCC-CcccccCcCchHHhhc
Q 012930 261 IENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG-GWLSKYDRSGPLFSLG 338 (453)
Q Consensus 261 ~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~l~~~l~ 338 (453)
++.+ +......|++|++|.+.+|. +++.+...+++. ++.|++|+++.|... +.+ +.....
T Consensus 257 sd~~-------l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~~d~~-------l~~~~~ 318 (482)
T KOG1947|consen 257 TDIG-------LSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGLTDSG-------LEALLK 318 (482)
T ss_pred Cchh-------HHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccchHHH-------HHHHHH
Confidence 6632 22222347788888877776 677777776553 567888888877633 211 112222
Q ss_pred CCCCCCcccEEEecCC----CCChhhHH---------HHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 339 AGKSLQSLRLLNLRGN----NLCKADAR---------DLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 339 ~~~~~~~L~~L~L~~n----~l~~~~~~---------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+|++|+.|.+... .+++.++. .....+..++.++.+.+..+.+++.|...++ ..++.
T Consensus 319 ---~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l-------~gc~~ 388 (482)
T KOG1947|consen 319 ---NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL-------RGCPN 388 (482)
T ss_pred ---hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh-------cCCcc
Confidence 3444444433332 24443321 1122345677777777777766666654332 22222
Q ss_pred --------------ccEEEccCCC-CChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 406 --------------LVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 406 --------------L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
++.|+++.|. .+..++...... ...+..++++++.
T Consensus 389 l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~----~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 389 LTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS----CSNLKDLDLSGCR 438 (482)
T ss_pred cchHHHHHhccCCccceEecccCccccccchHHHhhh----hhccccCCccCcc
Confidence 4677777764 455544433333 1236667766654
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=2.8e-07 Score=65.30 Aligned_cols=61 Identities=34% Similarity=0.464 Sum_probs=41.2
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCC
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 384 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i 384 (453)
++|++|++++|+++...+ ..+..+++|++|++++|.++. .-+.++..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence 357777788777765222 233366788888888887775 2234677788888888888764
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.21 E-value=3.9e-06 Score=85.69 Aligned_cols=224 Identities=22% Similarity=0.265 Sum_probs=144.0
Q ss_pred ccceeccccccchH---HHhhhhcCCCccEEEeccc-cChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHh
Q 012930 166 YARCLRLQNALCVE---ETCQLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSL 240 (453)
Q Consensus 166 ~l~~l~L~~~~~~~---~~~~l~~~~~L~~L~Ls~~-~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L 240 (453)
.++.+.+.++.-.. +......+++|++|+++++ ............+...+++|+.|+++++. +++.+...++..
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~- 267 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR- 267 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh-
Confidence 45556555542222 4455667899999999873 22122222223356677999999999997 999999999886
Q ss_pred hccccCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCC
Q 012930 241 CSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSG 318 (453)
Q Consensus 241 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~ 318 (453)
|++|+.|.+..|. +++. .+......+++|++|++++|. +++.+...+. .++++++.|.+..
T Consensus 268 ------c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~----~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 268 ------CPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHGLTDSGLEALL----KNCPNLRELKLLS 330 (482)
T ss_pred ------CCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCccchHHHHHHHH----HhCcchhhhhhhh
Confidence 7899999988887 6763 456666688999999999995 4455555542 3367777766544
Q ss_pred CC----CCCcccc---cCc-CchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC--------------ccE
Q 012930 319 NS----IGGWLSK---YDR-SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--------------LEI 376 (453)
Q Consensus 319 n~----l~~~~~~---~~~-~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--------------L~~ 376 (453)
.. +++.... ... ..+.... ..+++.++.+.+..+.+++.|.. ..+..++. ++.
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~---~~l~gc~~l~~~l~~~~~~~~~l~~ 405 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSYCGISDLGLE---LSLRGCPNLTESLELRLCRSDSLRV 405 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhhhhccCcchH---HHhcCCcccchHHHHHhccCCccce
Confidence 43 3321100 000 0111211 23788999999999987765532 22334443 588
Q ss_pred EeCCCCC-CChhHHHhHHHHHHhhcCCCCCccEEEccCCC-CChh
Q 012930 377 LDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGR 419 (453)
Q Consensus 377 L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~ 419 (453)
|+++.+. .++.++..... .+..+..+++.++. ++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLAD-------SCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred EecccCccccccchHHHhh-------hhhccccCCccCcccccch
Confidence 9998865 56666555532 15788999999996 4544
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=1.2e-07 Score=94.93 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
|+.+++++|.+... ...+.. ...+..|+++.|.+..
T Consensus 234 L~~l~l~~n~i~~~-----~~~~~~-~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNRISRS-----PEGLEN-LKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCccccc-----cccccc-cccccccchhhccccc
Confidence 77888888887762 134444 3448888888887754
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=3.8e-07 Score=73.67 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=18.0
Q ss_pred cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930 345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 385 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 385 (453)
.+++|+|++|.|.+ +|..+..++.|+.|+++.|++.
T Consensus 78 t~t~lNl~~neisd-----vPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEISD-----VPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhhh-----chHHHhhhHHhhhcccccCccc
Confidence 44455555555543 4444445555555555555544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.4e-05 Score=84.04 Aligned_cols=160 Identities=22% Similarity=0.293 Sum_probs=99.2
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
.+|++|++++...... .++..++ .+|+|++|.+.+-.+...-...+|. +.++|..||+|++.++..
T Consensus 122 ~nL~~LdI~G~~~~s~-------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~nl-- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISNL-- 188 (699)
T ss_pred HhhhhcCccccchhhc-------cHHHHHhhhCcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccCc--
Confidence 5677777776543221 3444444 4788888888887775544444544 468888888888888752
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 406 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L 406 (453)
.+++ ++++|++|.+++=.+.... .+ ..+..+++|+.||+|.....+.- +.+-.++ +.-..++.|
T Consensus 189 --------~GIS---~LknLq~L~mrnLe~e~~~--~l-~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYl-ec~~~LpeL 252 (699)
T KOG3665|consen 189 --------SGIS---RLKNLQVLSMRNLEFESYQ--DL-IDLFNLKKLRVLDISRDKNNDDT-KIIEQYL-ECGMVLPEL 252 (699)
T ss_pred --------HHHh---ccccHHHHhccCCCCCchh--hH-HHHhcccCCCeeeccccccccch-HHHHHHH-HhcccCccc
Confidence 4455 6678888888777666521 22 34557888888888876554422 1111122 445567888
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930 407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 440 (453)
Q Consensus 407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 440 (453)
+.||.++..++......+.+ . +++|+.+..
T Consensus 253 rfLDcSgTdi~~~~le~ll~---s-H~~L~~i~~ 282 (699)
T KOG3665|consen 253 RFLDCSGTDINEEILEELLN---S-HPNLQQIAA 282 (699)
T ss_pred cEEecCCcchhHHHHHHHHH---h-CccHhhhhh
Confidence 88888888877764333322 2 444555543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=1.6e-05 Score=83.67 Aligned_cols=145 Identities=21% Similarity=0.192 Sum_probs=100.7
Q ss_pred CCccEEEecccc-ChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930 188 SKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~-~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~ 266 (453)
.+|++|++++.. +...|. ......+|.|++|.+++-.+.......+|.. .++|..||+++++++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-------FpNL~sLDIS~TnI~n---- 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP---KKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-------FPNLRSLDISGTNISN---- 187 (699)
T ss_pred HhhhhcCccccchhhccHH---HHHhhhCcccceEEecCceecchhHHHHhhc-------cCccceeecCCCCccC----
Confidence 789999998866 333332 3335677899999999887777767777765 5888999999998877
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCCCCh-hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
+ ..++++++|+.|.+.+=.+.. .....++ ++++|+.||+|.....+.. ..+-..+.....++.
T Consensus 188 -----l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF-----~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 188 -----L-SGISRLKNLQVLSMRNLEFESYQDLIDLF-----NLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPE 251 (699)
T ss_pred -----c-HHHhccccHHHHhccCCCCCchhhHHHHh-----cccCCCeeeccccccccch-----HHHHHHHHhcccCcc
Confidence 2 566788899998888877654 2233332 3789999999988755321 112234444456788
Q ss_pred ccEEEecCCCCChhhHH
Q 012930 346 LRLLNLRGNNLCKADAR 362 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~ 362 (453)
|+.||.++..+.++-++
T Consensus 252 LrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEILE 268 (699)
T ss_pred ccEEecCCcchhHHHHH
Confidence 88888888888875433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5.3e-06 Score=54.12 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=22.7
Q ss_pred cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
+|++|++++|+|++ ++..+..+++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 46666666666664 55556666666666666666665
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=1.8e-06 Score=69.82 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHh-CCCCccEEeCCCCCCChh
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDD 387 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~ 387 (453)
..+..+||+.|.+.. ++.++..+.....|+..+|++|.+.+ .|+.+. ..+.++.|++++|.|++
T Consensus 27 kE~h~ldLssc~lm~---------i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd- 91 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY---------IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD- 91 (177)
T ss_pred HHhhhcccccchhhH---------HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-
Confidence 456778888888764 33444444456788899999999886 666665 45689999999999999
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 445 (453)
+| ..+..++.|+.|+++.|.+.. .++.+..+ .+|-.||..+|.+
T Consensus 92 -----vP---eE~Aam~aLr~lNl~~N~l~~-----~p~vi~~L-~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 92 -----VP---EELAAMPALRSLNLRFNPLNA-----EPRVIAPL-IKLDMLDSPENAR 135 (177)
T ss_pred -----ch---HHHhhhHHhhhcccccCcccc-----chHHHHHH-HhHHHhcCCCCcc
Confidence 77 557788999999999999887 35555442 3377788777764
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=7.7e-06 Score=88.22 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=91.1
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~ 246 (453)
+++..+.++....++. -..+++|.+|-+.+|.. ....+...++..++.|..|||++|.=....|..+.+
T Consensus 525 ~rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-------- 593 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-------- 593 (889)
T ss_pred eeEEEEeccchhhccC-CCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------
Confidence 4666666655543332 23446799999988762 233334445778899999999998665677777776
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 320 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 320 (453)
+.+|++|+++++.+.. +|..+.+++.|.+|++..+.-....+..+ ..+++|++|.+-...
T Consensus 594 Li~LryL~L~~t~I~~---------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISH---------LPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCccc---------cchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence 5889999999998876 88888899999999999886444232222 236899999887665
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.3e-05 Score=50.35 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=26.7
Q ss_pred CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 372 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 372 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
++|++|++++|+|++ +| ..+.++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence 467888888888887 65 336777888888888887776
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00022 Score=69.60 Aligned_cols=139 Identities=16% Similarity=0.270 Sum_probs=84.5
Q ss_pred HhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-
Q 012930 212 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC- 290 (453)
Q Consensus 212 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n- 290 (453)
+..+.++++|++++|.++... .+ ..+|+.|.+++|.-.. .++..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~L----------P~sLtsL~Lsnc~nLt--------sLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--VL----------PNELTEITIENCNNLT--------TLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--CC----------CCCCcEEEccCCCCcc--------cCCchh--hhhhhheEccCcc
Confidence 456689999999999777542 11 3679999998764322 122222 257899999988
Q ss_pred CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHh
Q 012930 291 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALV 369 (453)
Q Consensus 291 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 369 (453)
.+.. + ..+|+.|+++.+..... ..+. ++|+.|.+.+++ .... .++..
T Consensus 106 ~L~s-----L-------P~sLe~L~L~~n~~~~L----------~~LP-----ssLk~L~I~~~n~~~~~---~lp~~-- 153 (426)
T PRK15386 106 EISG-----L-------PESVRSLEIKGSATDSI----------KNVP-----NGLTSLSINSYNPENQA---RIDNL-- 153 (426)
T ss_pred cccc-----c-------ccccceEEeCCCCCccc----------ccCc-----chHhheecccccccccc---ccccc--
Confidence 4432 2 36788899887665421 1111 456777775433 1110 11211
Q ss_pred CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930 370 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 415 (453)
Q Consensus 370 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 415 (453)
-.++|+.|++++|.... +| ..+. .+|+.|.++.|.
T Consensus 154 LPsSLk~L~Is~c~~i~------LP---~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII------LP---EKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cCCcccEEEecCCCccc------Cc---cccc--ccCcEEEecccc
Confidence 12589999999887553 33 2233 689999988763
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.55 E-value=6.2e-05 Score=81.36 Aligned_cols=153 Identities=20% Similarity=0.108 Sum_probs=91.3
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC--CChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK--LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
...+...+-+|.+..... ...++.|++|-+..|. +.......+.. .+.|..|++++|.-..
T Consensus 523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~--------m~~LrVLDLs~~~~l~--- 585 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRS--------LPLLRVLDLSGNSSLS--- 585 (889)
T ss_pred hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhh--------CcceEEEECCCCCccC---
Confidence 455666666655322211 2355678888887775 34333333333 4778888888765444
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
.+|+.++.+-+|++|+|+++.+.. .|..+.. +..|.+||+..+.-.... +..+. .+++
T Consensus 586 -----~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~-----Lk~L~~Lnl~~~~~l~~~--------~~i~~---~L~~ 643 (889)
T KOG4658|consen 586 -----KLPSSIGELVHLRYLDLSDTGISH-LPSGLGN-----LKKLIYLNLEVTGRLESI--------PGILL---ELQS 643 (889)
T ss_pred -----cCChHHhhhhhhhcccccCCCccc-cchHHHH-----HHhhheeccccccccccc--------cchhh---hccc
Confidence 577788888888888888888774 6666633 577888888877533211 12222 4678
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD 381 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 381 (453)
|++|.+..-...... ..-..+..+.+|+.+....
T Consensus 644 Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDK--LLLKELENLEHLENLSITI 677 (889)
T ss_pred ccEEEeeccccccch--hhHHhhhcccchhhheeec
Confidence 888888665422211 2333445666666665543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=3.2e-05 Score=70.02 Aligned_cols=106 Identities=23% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930 279 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358 (453)
Q Consensus 279 ~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~ 358 (453)
+.+.+.|++-+|.+++. .||+. ++.|+.|.||-|+|+. +..+..|++|++|.|+.|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~k----Mp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEK----MPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHh----cccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence 34667788888888772 24443 6888888888888874 2333377888888888888876
Q ss_pred hhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEE
Q 012930 359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 410 (453)
Q Consensus 359 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~ 410 (453)
-+ --..+.++|+|+.|.|..|+-..++...-=- ..+..+++|+.||
T Consensus 78 ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD 123 (388)
T ss_pred HH---HHHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence 32 1245778888888888888765543321111 2244557777765
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00045 Score=59.95 Aligned_cols=110 Identities=24% Similarity=0.235 Sum_probs=58.3
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChh
Q 012930 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 359 (453)
Q Consensus 280 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~ 359 (453)
.+...+||++|.+.... .+..+..|.+|.|++|+|+...+ .+.. -+++|+.|.|.+|+|..-
T Consensus 42 d~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p---------~L~~--~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDP---------DLDT--FLPNLKTLILTNNSIQEL 103 (233)
T ss_pred cccceecccccchhhcc-------cCCCccccceEEecCCcceeecc---------chhh--hccccceEEecCcchhhh
Confidence 35666677776553311 12335667777777777665332 2322 235566777777766642
Q ss_pred hHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC
Q 012930 360 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 415 (453)
Q Consensus 360 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 415 (453)
| .+ .-+..+|.|+.|.+=+|++++..-.-. -.+..+++|+.||.+.-.
T Consensus 104 ~--dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~-----yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 104 G--DL-DPLASCPKLEYLTLLGNPVEHKKNYRL-----YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred h--hc-chhccCCccceeeecCCchhcccCcee-----EEEEecCcceEeehhhhh
Confidence 2 11 124466677777766676665321111 124555666666665543
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.24 E-value=0.00022 Score=69.56 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=28.7
Q ss_pred hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCC
Q 012930 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS 258 (453)
Q Consensus 184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n 258 (453)
+..+.+++.|++++|.+.... .--++|++|.+++|.--...+..+ ..+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--------~LP~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--------VLPNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--------CCCCCCcEEEccCCCCcccCCchh----------hhhhhheEccCc
Confidence 334466677777766533221 112357777776652212222222 245667777666
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=4.2e-05 Score=69.32 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387 (453)
Q Consensus 308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 387 (453)
+.+.+.|++.+|.++|. +.+..++.|++|.|+-|+|+. + ..+..|++|++|.|..|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DI-------------sic~kMp~lEVLsLSvNkIss-----L-~pl~rCtrLkElYLRkN~I~s- 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-------------SICEKMPLLEVLSLSVNKISS-----L-APLQRCTRLKELYLRKNCIES- 77 (388)
T ss_pred HHHhhhhcccCCCccHH-------------HHHHhcccceeEEeecccccc-----c-hhHHHHHHHHHHHHHhccccc-
Confidence 46788999999999872 233378999999999999996 3 347789999999999999987
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCChh-hHHHHHHHHhcCCCCCcEEE
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSGR-GVSQLLDTLSTLRRPPTSLS 439 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~~L~~L~ 439 (453)
+.-+ .-+.++++|+.|.|..|.=... |-..=...+..+ ++|++||
T Consensus 78 -----ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 78 -----LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred -----HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 3332 4478889999999999974433 333334455554 4488886
No 68
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.06 E-value=0.0014 Score=63.87 Aligned_cols=238 Identities=16% Similarity=0.050 Sum_probs=125.5
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCC-hhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS-PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~ 266 (453)
..+.+++|+.|.....+..+....... -.++.++.+...+. +.....+.. .. .++++..+++.|........
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~-~vl~~ld~s~tgirlD~l~~~l~~----g~--~tkl~~~kls~ng~s~skg~ 286 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGT-LVLFKLDRSTTGIRLDLLTSPLAA----GR--TTKLTFGKLSRNGTSPSKGE 286 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhh-hhhhcccccccccchhhccccccc----cc--ccccchhhhccCCCCccccc
Confidence 456778888887666555554444433 25666676666443 122222211 11 25677777877776544333
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCC-CCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
.+...--+.++.-+++ +|++..+....+-+..+.-++..+-.. =-++|+..|...+. .++..+.+=..
T Consensus 287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a----------~vleaci~g~R 355 (553)
T KOG4242|consen 287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA----------EVLEACIFGQR 355 (553)
T ss_pred ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc----------chhhcccccee
Confidence 3333555566666778 888888888777776664443333222 24567777665542 22222222245
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC-C--CChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHH
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN-T--IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 422 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~--i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 422 (453)
+++|..+.|++..+|.... .+...++.+.++++.- . +-+.+..+ +.....-....-+..+.++.|.+... ..
T Consensus 356 ~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a--~~v~k~~~~~g~l~el~ls~~~lka~-l~ 430 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEA--PPVSKKSRTHGVLAELSLSPGPLKAG-LE 430 (553)
T ss_pred eeEeecccccccccccccc--ceeeccccccccccccCCceeccccccc--hhhhhhhcccccccCcccCCCccccc-HH
Confidence 8888888888877665433 4556667777776642 2 22211111 11101111223455566666655442 22
Q ss_pred HHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 423 QLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 423 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
.....+.. ++++.+|++++|.-++-+
T Consensus 431 s~in~l~s-tqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 431 SAINKLLS-TQTLAKLDISGNGMGDGG 456 (553)
T ss_pred HHHHhhcc-CcccccccccCCCcccCC
Confidence 23333333 345666666666555543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00019 Score=64.73 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=56.3
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 388 (453)
..|+.|.+.+..++. +..+..+++|+.|.++.|.+...+ .+......+|+|++|++++|+|.+
T Consensus 43 ~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~-- 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKD-- 105 (260)
T ss_pred cchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCcccc--
Confidence 455555555555542 234446788999999999333221 233334566999999999998876
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 389 IRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+..+ ..+..+.+|..|++.+|..+.
T Consensus 106 lstl-----~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 106 LSTL-----RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccc-----chhhhhcchhhhhcccCCccc
Confidence 2222 235566778889999986544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00049 Score=59.71 Aligned_cols=69 Identities=29% Similarity=0.327 Sum_probs=36.5
Q ss_pred CCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCChh
Q 012930 310 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDD 387 (453)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~ 387 (453)
.++.+|-+++.|.. ..+..+..++.++.|.+.+| ++.+.+.+.+.. ..++|+.|++++| +||+.
T Consensus 102 ~IeaVDAsds~I~~-----------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY-----------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHH-----------HHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechh
Confidence 34555555555543 23333335556666666666 455555544443 3456666666655 46666
Q ss_pred HHHhH
Q 012930 388 GIRSL 392 (453)
Q Consensus 388 g~~~l 392 (453)
|+..+
T Consensus 168 GL~~L 172 (221)
T KOG3864|consen 168 GLACL 172 (221)
T ss_pred HHHHH
Confidence 65544
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.70 E-value=0.0026 Score=36.88 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=13.5
Q ss_pred CCccEEeCCCCCCChhHHHhHHH
Q 012930 372 PNLEILDISDNTIEDDGIRSLIP 394 (453)
Q Consensus 372 ~~L~~L~Ls~N~i~~~g~~~l~~ 394 (453)
++|+.|||++|.|+++|+.+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35566666666666666655553
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0019 Score=56.12 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=89.4
Q ss_pred ccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhH
Q 012930 282 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 361 (453)
Q Consensus 282 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~ 361 (453)
=++++|.+.++... ..+ .....+...+||+.|.+.. +..+.+++.|.+|.|.+|+|+.
T Consensus 21 e~e~~LR~lkip~i--enl----g~~~d~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~--- 78 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI--ENL----GATLDQFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITR--- 78 (233)
T ss_pred ccccccccccccch--hhc----cccccccceecccccchhh-------------cccCCCccccceEEecCCccee---
Confidence 46788888877652 122 2335678999999999874 2444478999999999999996
Q ss_pred HHHHHHHh-CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930 362 RDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 440 (453)
Q Consensus 362 ~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 440 (453)
+.+.+. .++.|..|.|.+|.|..-| .+ .-+..+++|++|.+-+|+++...-... -.+..+ ++|+.||.
T Consensus 79 --I~p~L~~~~p~l~~L~LtnNsi~~l~--dl-----~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~kl-p~l~~LDF 147 (233)
T KOG1644|consen 79 --IDPDLDTFLPNLKTLILTNNSIQELG--DL-----DPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKL-PSLRTLDF 147 (233)
T ss_pred --eccchhhhccccceEEecCcchhhhh--hc-----chhccCCccceeeecCCchhcccCcee-EEEEec-CcceEeeh
Confidence 555444 5678999999999886521 12 336777999999999998776322111 123343 45899988
Q ss_pred cCC
Q 012930 441 ADN 443 (453)
Q Consensus 441 s~N 443 (453)
+.-
T Consensus 148 ~kV 150 (233)
T KOG1644|consen 148 QKV 150 (233)
T ss_pred hhh
Confidence 654
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.00098 Score=60.20 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCCCccEEEcCCC--CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC
Q 012930 278 SGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN 355 (453)
Q Consensus 278 ~~~~L~~L~L~~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~ 355 (453)
.+++|+.|.++.| ++.. +...+++ .+++|++|+++.|+|... ..+.-.+.+.+|.+|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~~l----------stl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIKDL----------STLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCccccc----------cccchhhhhcchhhhhcccCC
Confidence 5678888888888 4444 2333333 357888888888887741 334444456778888888885
Q ss_pred CChhhHHHHHHHHhCCCCccEEe
Q 012930 356 LCKADARDLGSALVHIPNLEILD 378 (453)
Q Consensus 356 l~~~~~~~l~~~l~~~~~L~~L~ 378 (453)
.+...- .=-..+.-+++|..||
T Consensus 128 ~~~l~d-yre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 128 VTNLDD-YREKVFLLLPSLKYLD 149 (260)
T ss_pred cccccc-HHHHHHHHhhhhcccc
Confidence 443110 1223445566666664
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.32 E-value=0.0062 Score=35.25 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHh
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLS 429 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~ 429 (453)
++|++|+|++|.|++.|+..+++.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 67999999999999999999888774
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.17 E-value=0.0027 Score=35.26 Aligned_cols=21 Identities=57% Similarity=0.953 Sum_probs=9.5
Q ss_pred CCccEEeCCCCCCChhHHHhH
Q 012930 372 PNLEILDISDNTIEDDGIRSL 392 (453)
Q Consensus 372 ~~L~~L~Ls~N~i~~~g~~~l 392 (453)
++|++|+|++|+|+++|+.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 345555555555555554443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.57 E-value=0.0088 Score=33.16 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=15.8
Q ss_pred CCCccEEEccCCCCChhhHHHHH
Q 012930 403 CNPLVELYLENCELSGRGVSQLL 425 (453)
Q Consensus 403 ~~~L~~L~L~~n~l~~~~~~~l~ 425 (453)
+++|++|+|++|+|++.|+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36788888888888888777664
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0043 Score=54.01 Aligned_cols=59 Identities=36% Similarity=0.320 Sum_probs=29.6
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN 319 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 319 (453)
.++.++-+++.|.. .-.+.+..+++++.|.+.+| ++.+.+.+.+.. ..++|+.|++++|
T Consensus 102 ~IeaVDAsds~I~~--------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY--------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGC 161 (221)
T ss_pred eEEEEecCCchHHH--------HHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCC
Confidence 35555555555544 33444555666666666666 355544444322 1344444444444
No 78
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=94.87 E-value=0.026 Score=37.23 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=16.4
Q ss_pred hccCchHHHHHHHhcCChhhh
Q 012930 20 VYELPADLFDILLTCLPPLAL 40 (453)
Q Consensus 20 ~~~lp~~~~~~i~~~l~~~~l 40 (453)
+.+||.|++..||++||+.-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl 21 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDL 21 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHH
Confidence 357999999999999998766
No 79
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=94.73 E-value=0.019 Score=56.21 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=36.0
Q ss_pred ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+..+.++.|.+... ....+ .++.....+..|++++|..++.|...++.++.. +..++.+..+.|..++.+
T Consensus 415 l~el~ls~~~lka~-l~s~i----n~l~stqtl~kldisgn~mgd~gap~lpkalq~-n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 415 LAELSLSPGPLKAG-LESAI----NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQS-NCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred ccCcccCCCccccc-HHHHH----HhhccCcccccccccCCCcccCCCCcCccccCC-CCccCCCCCCCCCccccc
Confidence 55555555555432 11111 333344556666666666666555555555555 444666666555555443
No 80
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=94.06 E-value=0.08 Score=49.72 Aligned_cols=123 Identities=18% Similarity=0.130 Sum_probs=78.1
Q ss_pred HhhCCCCCCEEEcCCCC-CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930 304 LLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382 (453)
Q Consensus 304 L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 382 (453)
+..+-+.+...+++++. |... .-..+..++. .-+..+...+.+-+..+.-+-+++..+..+++|++|++.+|
T Consensus 193 i~~nd~~l~evnlnn~~~ip~e----~lk~~~eal~---~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 193 IKENDTGLTEVNLNNIRRIPIE----TLKQFSEALK---NNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HhcCCCCceeeeccccccCCHH----HHHHHHHHHh---cCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence 34556888988888775 3311 0111223333 44566667777777777666677777888889999999999
Q ss_pred CCChhHHHhHHHHHHhhcCCCCCccEEEccCC--CCChhhHHHHHHHHhcCCCCCcEE
Q 012930 383 TIEDDGIRSLIPYFVQASERCNPLVELYLENC--ELSGRGVSQLLDTLSTLRRPPTSL 438 (453)
Q Consensus 383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L 438 (453)
.|++.|+.+++ .++....+|..+...+- .+....-..++..+.. +.+|-.+
T Consensus 266 FItg~gi~a~~----~al~~n~tl~el~~dnqrq~lg~~vemeia~~lee-n~sllk~ 318 (353)
T KOG3735|consen 266 FITGLGIMALL----RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEE-NASLLKF 318 (353)
T ss_pred ccccHHHHHHH----HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHh-ccccccc
Confidence 99999888887 44566677877765443 2444444455666666 3334333
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.78 E-value=0.062 Score=30.37 Aligned_cols=21 Identities=48% Similarity=0.839 Sum_probs=9.5
Q ss_pred CCccEEeCCCC-CCChhHHHhH
Q 012930 372 PNLEILDISDN-TIEDDGIRSL 392 (453)
Q Consensus 372 ~~L~~L~Ls~N-~i~~~g~~~l 392 (453)
++|+.|+|++| .|+|.|+.++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 34444444444 2444444433
No 82
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=93.49 E-value=0.24 Score=46.61 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=78.0
Q ss_pred HHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEE
Q 012930 208 CKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLK 286 (453)
Q Consensus 208 ~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~ 286 (453)
..-+..+-+.+++.++.++ .|.......+++++..+ ...+.+.+.+.+..+ ..+.++...+..+++|++|+
T Consensus 190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~n----t~vk~Fsla~tr~~d----~vA~a~a~ml~~n~sl~sln 261 (353)
T KOG3735|consen 190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNN----THVKKFSLANTRSSD----PVAFAIAEMLKENKSLTSLN 261 (353)
T ss_pred HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcC----chhhhhhhhcccCCc----hhHHHHHHHHhhcchhhhee
Confidence 4444567789999999988 88888889999888875 678888888887777 34446777778889999999
Q ss_pred cCCCCCChhHHHHHHHHHhhCCCCCCEEEc
Q 012930 287 LRHCHLDRDFGRMVFSSLLEASSSLSILDL 316 (453)
Q Consensus 287 L~~n~l~~~~~~~l~~~L~~~~~~L~~L~L 316 (453)
+.+|.|++.+...+..+|..+ .+|..+..
T Consensus 262 vesnFItg~gi~a~~~al~~n-~tl~el~~ 290 (353)
T KOG3735|consen 262 VESNFITGLGIMALLRALQSN-KSLTELKN 290 (353)
T ss_pred ccccccccHHHHHHHHHHhcc-chhhHhhh
Confidence 999999998888888877665 55555543
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.55 E-value=0.15 Score=28.79 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=19.7
Q ss_pred CCCccEEEcCCC-CCChhHHHHHHH
Q 012930 215 SETLASLEFLHC-KLSPSFVEGICR 238 (453)
Q Consensus 215 ~~~L~~L~L~~n-~l~~~~~~~l~~ 238 (453)
+++|++|+|++| .|++.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 468899999999 799988888753
No 84
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=91.49 E-value=0.18 Score=33.16 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=17.7
Q ss_pred hhhccCchHHHHHHHhcCChhhh
Q 012930 18 PYVYELPADLFDILLTCLPPLAL 40 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l 40 (453)
+.+.+||.|++..|+.+||+..+
T Consensus 1 ~~~~~LP~~il~~Il~~l~~~~~ 23 (48)
T PF00646_consen 1 FPLSDLPDEILQEILSYLDPKDL 23 (48)
T ss_dssp -HHHHS-HHHHHHHHHTS-HHHH
T ss_pred CCHHHCCHHHHHHHHHHCcHHHH
Confidence 45789999999999999997666
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.07 E-value=0.11 Score=26.14 Aligned_cols=6 Identities=50% Similarity=0.789 Sum_probs=2.1
Q ss_pred EEecCC
Q 012930 349 LNLRGN 354 (453)
Q Consensus 349 L~L~~n 354 (453)
|++++|
T Consensus 6 L~l~~n 11 (17)
T PF13504_consen 6 LDLSNN 11 (17)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.37 E-value=0.1 Score=28.18 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=9.6
Q ss_pred CcEEECcCCCCCcccc
Q 012930 435 PTSLSIADNNLGRFCA 450 (453)
Q Consensus 435 L~~L~Ls~N~l~~~~~ 450 (453)
|++|||++|+|+ .+|
T Consensus 2 L~~Ldls~n~l~-~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIP 16 (22)
T ss_dssp ESEEEETSSEES-EEG
T ss_pred ccEEECCCCcCE-eCC
Confidence 666777777666 444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.07 E-value=2.9 Score=42.33 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=9.7
Q ss_pred CCCCCCEEEcCCCCCCC
Q 012930 307 ASSSLSILDLSGNSIGG 323 (453)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~ 323 (453)
+-+.+..++|++|++..
T Consensus 216 n~p~i~sl~lsnNrL~~ 232 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH 232 (585)
T ss_pred CCcceeeeecccchhhc
Confidence 44556666666666543
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.30 E-value=2.4 Score=34.25 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCC
Q 012930 342 SLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDN 382 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N 382 (453)
++.+|+.+.+.+ .+.. ++ .++..++.|+.+++..+
T Consensus 56 ~~~~l~~i~~~~-~~~~-----i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 56 NCKSLESITFPN-NLKS-----IGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-TT-EEEEETS-TT-E-----E-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccc-cccc-----cccccccccccccccccCcc
Confidence 445566666654 2221 11 23445666666666543
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.68 E-value=1.8 Score=34.98 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=44.3
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
.+|+.+.+.. .+.. .-...+.++.+|+.+.+.++ +.. ... ..+..+.+|+.+.+.. .+....
T Consensus 12 ~~l~~i~~~~-~~~~--------I~~~~F~~~~~l~~i~~~~~-~~~-i~~----~~F~~~~~l~~i~~~~-~~~~i~-- 73 (129)
T PF13306_consen 12 SNLESITFPN-TIKK--------IGENAFSNCTSLKSINFPNN-LTS-IGD----NAFSNCKSLESITFPN-NLKSIG-- 73 (129)
T ss_dssp TT--EEEETS-T--E--------E-TTTTTT-TT-SEEEESST-TSC-E-T----TTTTT-TT-EEEEETS-TT-EE---
T ss_pred CCCCEEEECC-CeeE--------eChhhccccccccccccccc-ccc-cce----eeeecccccccccccc-cccccc--
Confidence 4666666653 2332 12234556677888888765 332 111 1134455788888865 322110
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCC
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISD 381 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~ 381 (453)
. ..+..+.+|+.+++..+ +.. ++. .+..+ .|+.+.+..
T Consensus 74 -------~--~~F~~~~~l~~i~~~~~-~~~-----i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 -------D--NAFSNCTNLKNIDIPSN-ITE-----IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -------T--TTTTT-TTECEEEETTT--BE-----EHTTTTTT--T--EEE-TT
T ss_pred -------c--ccccccccccccccCcc-ccE-----EchhhhcCC-CceEEEECC
Confidence 1 23335778888888665 443 232 34455 777777764
No 90
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=74.27 E-value=3.2 Score=25.70 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=15.7
Q ss_pred CchHHHHHHHhcCChhhh
Q 012930 23 LPADLFDILLTCLPPLAL 40 (453)
Q Consensus 23 lp~~~~~~i~~~l~~~~l 40 (453)
||.|++..|+++||+..+
T Consensus 1 lP~~ll~~I~~~l~~~d~ 18 (41)
T smart00256 1 LPDEILEEILSKLPPKDL 18 (41)
T ss_pred CCHHHHHHHHHcCCHHHH
Confidence 799999999999996544
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.08 E-value=3 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=8.8
Q ss_pred CCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPS 231 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~ 231 (453)
++|++|+|++|.|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3555666666655543
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.08 E-value=3 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=8.8
Q ss_pred CCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPS 231 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~ 231 (453)
++|++|+|++|.|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3555666666655543
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.70 E-value=4.3 Score=22.89 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=9.2
Q ss_pred CCccEEeCCCCCCCh
Q 012930 372 PNLEILDISDNTIED 386 (453)
Q Consensus 372 ~~L~~L~Ls~N~i~~ 386 (453)
.+|+.|+|+.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 356666666666643
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.15 E-value=0.084 Score=47.19 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=54.8
Q ss_pred CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387 (453)
Q Consensus 308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 387 (453)
......||++.|++-..+ ..++ .++.|..|+++.|.+. .+|+.++....++++++-.|..+.
T Consensus 41 ~kr~tvld~~s~r~vn~~---------~n~s---~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~- 102 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG---------KNFS---ILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQ- 102 (326)
T ss_pred cceeeeehhhhhHHHhhc---------cchH---HHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhh-
Confidence 356677777777765422 1222 3456677777777665 366666666667777777776665
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
.| .+.+..+.++++++-.+.++.
T Consensus 103 -----~p---~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 103 -----QP---KSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred -----CC---ccccccCCcchhhhccCcchH
Confidence 55 556777777888877777665
No 95
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=65.47 E-value=2.4 Score=39.77 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=37.9
Q ss_pred chhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCCCCCCCC--
Q 012930 17 IPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-- 94 (453)
Q Consensus 17 ~~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~~~~~~~-- 94 (453)
++-+..||+|+|-+||...=+..+ +..+-..|...|+.=..++-....|+-.|-+.|........
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~-------------d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~ 170 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLL-------------DLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPK 170 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhc-------------chhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchh
Confidence 345677999999999877654332 00000112222222222333445576666666775444433
Q ss_pred ------CchhHHHH
Q 012930 95 ------PVDWQQRY 102 (453)
Q Consensus 95 ------~~~~~~~~ 102 (453)
..+|+.++
T Consensus 171 ~~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 171 ILQSKYYTSWREMF 184 (366)
T ss_pred hhhhHHHhHHHHHH
Confidence 35677666
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.27 E-value=9 Score=38.99 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=59.1
Q ss_pred CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC--CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh
Q 012930 342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN--TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 419 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 419 (453)
+.+.+..++|++|++..-+ .+...-...|.|.+|+||+| .+.+. ..+ ..++. ..|++|.|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~--~el-----~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSE--SEL-----DKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcch--hhh-----hhhcC-CCHHHeeecCCccccc
Confidence 5678899999999887633 34444557899999999999 55441 111 11222 5799999999997653
Q ss_pred hH--HHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 420 GV--SQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 420 ~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
-. .+...++...=+.|..|| |+.+..++
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD--G~ev~~~~ 315 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD--GVEVQPEV 315 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec--CcccCccc
Confidence 11 112222222112265555 77776644
No 97
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=59.65 E-value=26 Score=27.63 Aligned_cols=65 Identities=23% Similarity=0.416 Sum_probs=45.1
Q ss_pred hhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCC---CCCCCCC
Q 012930 19 YVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG---FTDQIEP 95 (453)
Q Consensus 19 ~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~---~~~~~~~ 95 (453)
.+..+|-+++..|+.+.+|+-|..+-..= +++...+ ..-|++++...++. ......+
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~n-----p~l~~~t---------------deLW~~~i~rdFp~~~~~~~~~~~ 62 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNN-----PHLIEDT---------------DELWKKLIKRDFPEESKRQKPKEP 62 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhC-----CCcchhh---------------HHHHHHHHHhHCcChhhccccccc
Confidence 45678999999999999999997777322 1221111 35699999998875 2233335
Q ss_pred chhHHHHH
Q 012930 96 VDWQQRYW 103 (453)
Q Consensus 96 ~~~~~~~~ 103 (453)
.+|...|.
T Consensus 63 ~~Wr~~Y~ 70 (109)
T PF06881_consen 63 ESWRELYE 70 (109)
T ss_pred chHHHHHH
Confidence 68998885
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.71 E-value=9.3 Score=21.55 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=9.5
Q ss_pred CCcEEECcCCCCCc
Q 012930 434 PPTSLSIADNNLGR 447 (453)
Q Consensus 434 ~L~~L~Ls~N~l~~ 447 (453)
+|+.|++++|+|+.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 46777777777654
No 99
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=48.49 E-value=0.35 Score=43.36 Aligned_cols=91 Identities=16% Similarity=-0.007 Sum_probs=66.8
Q ss_pred HHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEec
Q 012930 273 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 352 (453)
Q Consensus 273 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~ 352 (453)
...+......+.||++.|++...+-. + .-++.+..||++.|.+.- +|...+ ....++.+++.
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n-~-----s~~t~~~rl~~sknq~~~---------~~~d~~---q~~e~~~~~~~ 96 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKN-F-----SILTRLVRLDLSKNQIKF---------LPKDAK---QQRETVNAASH 96 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccc-h-----HHHHHHHHHhccHhhHhh---------ChhhHH---HHHHHHHHHhh
Confidence 34455678889999999976542222 1 113678889999998764 456666 44677788888
Q ss_pred CCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 353 GNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 353 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
.|.... +|.+.+..++++.+++-+|.++.
T Consensus 97 ~n~~~~-----~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 97 KNNHSQ-----QPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccchhh-----CCccccccCCcchhhhccCcchH
Confidence 888774 89999999999999999998754
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=36.47 E-value=34 Score=30.56 Aligned_cols=11 Identities=18% Similarity=-0.136 Sum_probs=5.8
Q ss_pred ccceecccccc
Q 012930 166 YARCLRLQNAL 176 (453)
Q Consensus 166 ~l~~l~L~~~~ 176 (453)
+++.|+++.+.
T Consensus 142 DLskLDlr~in 152 (302)
T KOG1665|consen 142 DLSKLDLRLIN 152 (302)
T ss_pred chhhccccccc
Confidence 55555555443
No 101
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=34.48 E-value=51 Score=18.59 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=15.4
Q ss_pred hHHHHHHHhc--CChhhhhhhhhc
Q 012930 25 ADLFDILLTC--LPPLALQKLQTK 46 (453)
Q Consensus 25 ~~~~~~i~~~--l~~~~l~~~~~~ 46 (453)
|++...+..+ +|++.|+.+-+|
T Consensus 1 ~~VR~avA~~P~~P~~~L~~La~D 24 (26)
T PF01816_consen 1 WEVRAAVARRPNLPPEVLEQLAHD 24 (26)
T ss_dssp HHHHHHHHHH--S-GGGGGGGTT-
T ss_pred CHHHHHHHHccCCCHHHHHHhccC
Confidence 5677777777 898888877654
No 102
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=24.70 E-value=63 Score=31.00 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=18.2
Q ss_pred hhhccCc----hHHHHHHHhcCChhhh
Q 012930 18 PYVYELP----ADLFDILLTCLPPLAL 40 (453)
Q Consensus 18 ~~~~~lp----~~~~~~i~~~l~~~~l 40 (453)
.++..|| .|+-..|+++|+.+.|
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sL 99 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSL 99 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhh
Confidence 4566788 8999999999996655
No 103
>PF13013 F-box-like_2: F-box-like domain
Probab=22.25 E-value=59 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.1
Q ss_pred hccCchHHHHHHHhcCChhhh
Q 012930 20 VYELPADLFDILLTCLPPLAL 40 (453)
Q Consensus 20 ~~~lp~~~~~~i~~~l~~~~l 40 (453)
+.+||+||+..|+.+-.+..+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l 42 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPIL 42 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHH
Confidence 678999999999987765444
No 104
>cd08795 Death_IRAK2 Death domain of Interleukin 1 Receptor Associated Kinase-2. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 1 (IRAK1). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors (TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK2 is an essential component of several signaling pathways, including NF-kappaB and the IL-1 signaling pathways. It is an inactive kinase that participates in septic shock mediated by TLR4 and TLR9. It plays a redundant role with IRAK1 in early NF-kB and MAPK responses, and remains present at later stages whereas IRAK1 disappears. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-as
Probab=21.75 E-value=50 Score=24.93 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=17.7
Q ss_pred hhhccCchHHHHHHHhcCC
Q 012930 18 PYVYELPADLFDILLTCLP 36 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~ 36 (453)
||+|++|+.++.++...|+
T Consensus 1 ~~iy~lP~~v~~~lc~~lD 19 (88)
T cd08795 1 PYVYQLPAWVLDDFCRNMD 19 (88)
T ss_pred CchhhCCHHHHHHHHHHHc
Confidence 7999999999999998888
No 105
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.03 E-value=45 Score=32.74 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.4
Q ss_pred hccCchHHHHHHHhcCC
Q 012930 20 VYELPADLFDILLTCLP 36 (453)
Q Consensus 20 ~~~lp~~~~~~i~~~l~ 36 (453)
-.+||+|||..|..+||
T Consensus 4 Ws~Lp~dll~~i~~~l~ 20 (373)
T PLN03215 4 WSTLPEELLHMIAGRLF 20 (373)
T ss_pred hhhCCHHHHHHHHhhCC
Confidence 34799999999999998
Done!