Query 012930
Match_columns 453
No_of_seqs 320 out of 3046
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3goz_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 225.1 18.3 266 166-450 23-301 (362)
2 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-25 5.2E-30 226.1 24.1 265 167-450 87-358 (461)
3 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-25 4.7E-30 226.4 23.1 263 166-450 29-301 (461)
4 2ca6_A RAN GTPase-activating p 99.9 1.5E-25 5.1E-30 221.1 22.7 266 166-450 33-320 (386)
5 2ca6_A RAN GTPase-activating p 99.9 3.1E-25 1.1E-29 218.8 24.1 232 185-430 91-331 (386)
6 3goz_A Leucine-rich repeat-con 99.9 2.7E-25 9.3E-30 217.3 17.8 257 171-445 4-265 (362)
7 2ast_B S-phase kinase-associat 99.9 3E-23 1E-27 200.4 19.6 234 166-451 71-311 (336)
8 3rgz_A Protein brassinosteroid 99.9 1.2E-23 4E-28 225.5 3.6 245 167-453 420-724 (768)
9 3un9_A NLR family member X1; l 99.9 7.2E-22 2.5E-26 193.0 15.4 186 188-392 72-259 (372)
10 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-24 1.6E-28 204.2 -4.3 231 166-451 51-286 (313)
11 3rgz_A Protein brassinosteroid 99.8 1E-22 3.5E-27 218.2 2.6 233 166-451 395-698 (768)
12 3v47_A TOLL-like receptor 5B a 99.8 1.2E-21 4E-26 197.3 8.4 255 166-450 80-412 (455)
13 3v47_A TOLL-like receptor 5B a 99.8 4.3E-21 1.5E-25 193.2 10.4 113 166-298 55-172 (455)
14 3un9_A NLR family member X1; l 99.8 5.8E-20 2E-24 179.5 18.1 212 216-448 72-285 (372)
15 1xku_A Decorin; proteoglycan, 99.8 3E-21 1E-25 186.0 4.6 229 166-447 77-307 (330)
16 2z80_A TOLL-like receptor 2, v 99.8 8.5E-21 2.9E-25 184.7 7.8 231 166-448 53-316 (353)
17 1wwl_A Monocyte differentiatio 99.8 1.4E-21 4.9E-26 186.8 2.2 219 186-449 93-312 (312)
18 4fcg_A Uncharacterized protein 99.8 6.9E-22 2.3E-26 190.4 -0.3 224 166-446 82-314 (328)
19 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-21 1.6E-25 180.8 5.3 207 188-447 32-239 (285)
20 2id5_A Lingo-1, leucine rich r 99.8 6.4E-21 2.2E-25 193.2 6.7 230 166-448 81-311 (477)
21 4fcg_A Uncharacterized protein 99.8 4.4E-22 1.5E-26 191.7 -2.2 211 188-451 81-295 (328)
22 2z66_A Variable lymphocyte rec 99.8 2.2E-21 7.4E-26 185.0 -0.2 234 165-448 28-263 (306)
23 2ast_B S-phase kinase-associat 99.8 3.1E-19 1E-23 172.2 14.9 211 188-449 70-287 (336)
24 4fmz_A Internalin; leucine ric 99.8 4.2E-19 1.4E-23 172.1 15.9 218 166-450 111-328 (347)
25 3o6n_A APL1; leucine-rich repe 99.8 7.9E-21 2.7E-25 187.4 3.2 233 166-448 70-333 (390)
26 2p1m_B Transport inhibitor res 99.8 1.4E-18 4.8E-23 180.6 20.0 113 166-290 106-221 (594)
27 3zyj_A Leucine-rich repeat-con 99.8 6.2E-21 2.1E-25 191.3 1.9 228 165-446 64-292 (440)
28 1xku_A Decorin; proteoglycan, 99.8 2.5E-20 8.6E-25 179.6 5.0 224 166-449 53-279 (330)
29 3zyi_A Leucine-rich repeat-con 99.8 1E-20 3.4E-25 190.4 2.0 228 165-446 75-303 (452)
30 2z66_A Variable lymphocyte rec 99.8 5.2E-21 1.8E-25 182.3 -0.4 230 167-451 9-241 (306)
31 4fmz_A Internalin; leucine ric 99.8 7.6E-19 2.6E-23 170.3 14.5 229 151-446 110-346 (347)
32 3oja_B Anopheles plasmodium-re 99.8 2.2E-20 7.4E-25 194.6 3.5 233 166-448 76-339 (597)
33 3o6n_A APL1; leucine-rich repe 99.8 8.5E-21 2.9E-25 187.2 0.4 245 151-448 69-354 (390)
34 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-21 4.9E-26 186.9 -5.1 209 188-451 50-262 (313)
35 4eco_A Uncharacterized protein 99.8 1.5E-20 5.1E-25 197.1 2.1 136 166-322 207-366 (636)
36 3t6q_A CD180 antigen; protein- 99.8 1.3E-20 4.6E-25 196.5 1.4 244 166-450 279-540 (606)
37 2ft3_A Biglycan; proteoglycan, 99.8 6.1E-21 2.1E-25 184.1 -1.3 229 166-446 55-307 (332)
38 3ogk_B Coronatine-insensitive 99.8 5.5E-18 1.9E-22 176.1 20.6 242 167-450 272-530 (592)
39 2id5_A Lingo-1, leucine rich r 99.8 3.5E-20 1.2E-24 187.7 3.8 232 166-450 57-289 (477)
40 4eco_A Uncharacterized protein 99.8 3.3E-21 1.1E-25 202.1 -4.1 216 180-447 198-447 (636)
41 3ogk_B Coronatine-insensitive 99.8 1.9E-18 6.5E-23 179.6 16.5 112 190-317 140-251 (592)
42 1wwl_A Monocyte differentiatio 99.8 1.5E-19 5.1E-24 172.8 7.4 210 166-419 96-311 (312)
43 3t6q_A CD180 antigen; protein- 99.8 6.5E-20 2.2E-24 191.3 5.0 136 166-326 58-196 (606)
44 4glp_A Monocyte differentiatio 99.8 1.8E-20 6.3E-25 179.0 0.1 217 186-449 89-310 (310)
45 3oja_B Anopheles plasmodium-re 99.8 2E-20 6.9E-25 194.8 -0.0 245 151-448 75-360 (597)
46 4ecn_A Leucine-rich repeat pro 99.8 6.2E-20 2.1E-24 196.7 3.0 192 212-449 444-660 (876)
47 1ozn_A Reticulon 4 receptor; N 99.8 6.2E-20 2.1E-24 173.0 2.7 218 165-430 32-252 (285)
48 4ecn_A Leucine-rich repeat pro 99.8 1.8E-19 6.1E-24 193.2 5.4 183 166-386 449-658 (876)
49 4glp_A Monocyte differentiatio 99.8 8.4E-20 2.9E-24 174.4 2.4 213 166-419 92-309 (310)
50 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.9E-24 182.1 3.3 225 169-449 47-271 (440)
51 3rfs_A Internalin B, repeat mo 99.8 1.1E-19 3.8E-24 170.1 2.5 202 186-451 39-240 (272)
52 3zyi_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 182.0 3.4 225 169-449 58-282 (452)
53 3o53_A Protein LRIM1, AGAP0063 99.8 2.5E-19 8.7E-24 171.6 4.4 215 166-446 35-250 (317)
54 3o53_A Protein LRIM1, AGAP0063 99.8 5.7E-20 1.9E-24 176.1 -0.3 213 166-442 59-271 (317)
55 2z62_A TOLL-like receptor 4, v 99.8 1.2E-19 4E-24 170.3 1.8 211 188-448 28-239 (276)
56 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-18 4.3E-23 178.2 9.5 47 275-323 215-261 (520)
57 2z80_A TOLL-like receptor 2, v 99.8 6.7E-19 2.3E-23 171.2 7.0 225 166-430 101-329 (353)
58 1io0_A Tropomodulin; LRR prote 99.7 1.9E-17 6.4E-22 145.6 15.3 140 269-420 25-167 (185)
59 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-19 3.6E-24 189.7 0.8 142 275-448 419-560 (606)
60 2ft3_A Biglycan; proteoglycan, 99.7 4.3E-20 1.5E-24 178.1 -2.2 139 280-444 193-331 (332)
61 3oja_A Leucine-rich immune mol 99.7 1.7E-19 5.7E-24 183.0 1.4 57 167-229 36-93 (487)
62 3vq2_A TLR4, TOLL-like recepto 99.7 1E-19 3.5E-24 189.9 -1.1 241 151-447 285-535 (606)
63 1h6u_A Internalin H; cell adhe 99.7 2.9E-18 1E-22 163.4 8.6 60 343-418 150-209 (308)
64 1p9a_G Platelet glycoprotein I 99.7 5.1E-19 1.7E-23 167.2 3.1 210 166-430 11-222 (290)
65 2z7x_B TOLL-like receptor 1, v 99.7 2.6E-18 9.1E-23 175.8 8.5 228 166-449 248-484 (520)
66 1o6v_A Internalin A; bacterial 99.7 2.8E-17 9.4E-22 166.0 15.2 107 184-323 173-279 (466)
67 2z81_A CD282 antigen, TOLL-lik 99.7 3.4E-18 1.1E-22 176.2 8.7 92 308-418 333-424 (549)
68 2p1m_B Transport inhibitor res 99.7 4.3E-17 1.5E-21 169.4 16.8 224 184-450 285-523 (594)
69 2z62_A TOLL-like receptor 4, v 99.7 4E-19 1.4E-23 166.7 1.2 220 165-430 28-252 (276)
70 3oja_A Leucine-rich immune mol 99.7 2.7E-19 9.1E-24 181.5 -0.0 212 166-441 59-270 (487)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-18 4.3E-23 180.0 4.8 127 165-321 52-181 (562)
72 1ziw_A TOLL-like receptor 3; i 99.7 2.9E-18 9.9E-23 181.3 7.5 186 166-386 50-236 (680)
73 1ziw_A TOLL-like receptor 3; i 99.7 6.5E-18 2.2E-22 178.6 10.0 239 165-450 25-265 (680)
74 2o6q_A Variable lymphocyte rec 99.7 9.1E-19 3.1E-23 163.7 2.6 202 167-418 18-219 (270)
75 2o6q_A Variable lymphocyte rec 99.7 1.8E-18 6.1E-23 161.8 4.4 204 188-447 16-219 (270)
76 1o6v_A Internalin A; bacterial 99.7 2.6E-17 8.9E-22 166.1 13.3 212 166-447 178-389 (466)
77 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.9E-22 159.4 9.8 190 166-418 42-231 (308)
78 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-17 3.8E-22 168.1 9.6 184 166-419 65-248 (457)
79 2z63_A TOLL-like receptor 4, v 99.7 4.1E-19 1.4E-23 183.8 -1.3 229 167-451 306-536 (570)
80 2z81_A CD282 antigen, TOLL-lik 99.7 4.2E-18 1.4E-22 175.4 3.5 237 165-447 26-265 (549)
81 3g06_A SSPH2 (leucine-rich rep 99.7 5.6E-18 1.9E-22 175.8 4.1 227 151-450 61-301 (622)
82 3j0a_A TOLL-like receptor 5; m 99.7 1.8E-18 6.2E-23 187.1 0.4 90 344-450 266-355 (844)
83 3rfs_A Internalin B, repeat mo 99.7 2.1E-17 7E-22 154.7 7.4 184 214-450 39-222 (272)
84 1pgv_A TMD-1, tropomodulin TMD 99.7 3.7E-16 1.3E-20 136.5 14.4 136 269-445 30-169 (197)
85 1p9a_G Platelet glycoprotein I 99.7 5.7E-18 2E-22 160.0 3.0 203 184-446 6-208 (290)
86 3bz5_A Internalin-J, INLJ; leu 99.7 2.4E-17 8.1E-22 165.7 7.0 177 151-386 64-247 (457)
87 3j0a_A TOLL-like receptor 5; m 99.7 3.4E-18 1.2E-22 185.0 0.1 87 309-418 266-352 (844)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.6E-17 1.2E-21 169.0 7.1 159 247-449 352-513 (562)
89 3m19_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 151.2 5.7 191 189-430 15-207 (251)
90 1io0_A Tropomodulin; LRR prote 99.7 2.2E-16 7.7E-21 138.6 10.5 140 206-389 26-168 (185)
91 3m19_A Variable lymphocyte rec 99.7 3E-17 1E-21 151.7 5.1 181 216-448 14-194 (251)
92 1h6t_A Internalin B; cell adhe 99.6 2.7E-16 9.3E-21 148.5 8.3 171 186-418 44-214 (291)
93 4ezg_A Putative uncharacterize 99.6 4.6E-16 1.6E-20 138.2 8.7 151 248-447 44-195 (197)
94 2z63_A TOLL-like receptor 4, v 99.6 1E-17 3.4E-22 173.3 -2.4 229 166-450 283-511 (570)
95 1h6t_A Internalin B; cell adhe 99.6 3.7E-16 1.2E-20 147.6 7.6 170 216-448 46-215 (291)
96 2xwt_C Thyrotropin receptor; s 99.6 1.7E-17 6E-22 152.0 -3.4 198 188-444 31-237 (239)
97 4ezg_A Putative uncharacterize 99.6 4.9E-16 1.7E-20 138.0 5.0 130 247-418 65-195 (197)
98 3g06_A SSPH2 (leucine-rich rep 99.6 4.8E-16 1.6E-20 161.3 4.4 197 165-446 61-274 (622)
99 2xwt_C Thyrotropin receptor; s 99.6 6.6E-17 2.3E-21 148.1 -1.9 181 216-447 31-219 (239)
100 3cvr_A Invasion plasmid antige 99.6 6.8E-16 2.3E-20 158.3 4.9 184 166-424 60-250 (571)
101 1jl5_A Outer protein YOPM; leu 99.6 1.5E-15 5.2E-20 152.4 6.4 98 166-294 154-251 (454)
102 2o6s_A Variable lymphocyte rec 99.6 3E-16 1E-20 140.6 0.9 156 248-451 28-183 (208)
103 1m9s_A Internalin B; cell inva 99.6 3.1E-15 1.1E-19 154.9 8.0 171 186-418 41-211 (605)
104 1m9s_A Internalin B; cell inva 99.6 2.3E-15 7.7E-20 156.0 6.8 173 214-449 41-213 (605)
105 1xeu_A Internalin C; cellular 99.6 2.3E-15 7.7E-20 140.0 5.8 39 342-386 126-164 (263)
106 3cvr_A Invasion plasmid antige 99.5 1.6E-15 5.3E-20 155.6 4.7 35 347-386 210-244 (571)
107 1jl5_A Outer protein YOPM; leu 99.5 2.2E-15 7.4E-20 151.3 5.0 218 148-447 68-291 (454)
108 3e6j_A Variable lymphocyte rec 99.5 1.7E-14 5.7E-19 131.2 5.8 146 248-430 40-187 (229)
109 2ra8_A Uncharacterized protein 99.5 1.5E-13 5.2E-18 133.0 12.7 199 213-444 136-341 (362)
110 1dce_A Protein (RAB geranylger 99.5 5.8E-16 2E-20 159.4 -4.9 125 281-440 442-567 (567)
111 2xot_A Amphoterin-induced prot 99.5 4.7E-15 1.6E-19 144.5 1.8 178 191-419 21-204 (361)
112 3e6j_A Variable lymphocyte rec 99.5 1.5E-14 5.2E-19 131.5 5.0 157 248-449 19-175 (229)
113 1pgv_A TMD-1, tropomodulin TMD 99.5 3E-13 1E-17 118.1 12.8 93 204-304 29-122 (197)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-14 3.7E-19 131.6 3.3 154 219-418 14-167 (220)
115 1xeu_A Internalin C; cellular 99.5 3.2E-14 1.1E-18 132.2 5.9 149 185-386 38-186 (263)
116 2v9t_B SLIT homolog 2 protein 99.5 1.6E-14 5.5E-19 130.5 3.6 153 219-418 14-166 (220)
117 2v9t_B SLIT homolog 2 protein 99.5 2E-14 6.9E-19 129.9 3.6 152 191-385 14-165 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 2.1E-14 7.1E-19 129.7 3.2 152 191-385 14-166 (220)
119 1dce_A Protein (RAB geranylger 99.4 9.5E-16 3.2E-20 157.8 -6.6 197 186-450 347-550 (567)
120 4g8a_A TOLL-like receptor 4; l 99.4 6.9E-14 2.3E-18 146.1 6.4 186 188-418 52-238 (635)
121 2o6s_A Variable lymphocyte rec 99.4 2.3E-13 8E-18 121.6 8.2 157 250-450 9-165 (208)
122 2xot_A Amphoterin-induced prot 99.4 1.5E-14 5.1E-19 140.9 -0.1 181 166-385 19-202 (361)
123 4b8c_D Glucose-repressible alc 99.4 1.2E-14 4E-19 154.2 -1.7 114 273-418 217-330 (727)
124 4g8a_A TOLL-like receptor 4; l 99.4 1.2E-13 4.3E-18 144.1 6.0 186 216-447 52-238 (635)
125 2ell_A Acidic leucine-rich nuc 99.4 1.2E-13 4.1E-18 119.1 4.4 138 279-447 23-161 (168)
126 2je0_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 112.2 7.5 132 280-442 17-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.3E-18 117.5 4.7 138 214-385 22-160 (168)
128 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.1E-18 114.7 4.3 133 248-413 17-149 (149)
129 4b8c_D Glucose-repressible alc 99.3 3.8E-14 1.3E-18 150.2 -3.0 60 248-322 247-306 (727)
130 2ra8_A Uncharacterized protein 99.3 3.6E-13 1.2E-17 130.4 3.2 206 217-450 108-324 (362)
131 1w8a_A SLIT protein; signaling 99.3 3.9E-13 1.3E-17 118.6 2.9 133 249-419 9-141 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.3 8E-13 2.7E-17 114.8 3.1 64 342-417 62-126 (176)
133 4ay9_X Follicle-stimulating ho 99.3 4.1E-14 1.4E-18 137.1 -6.8 181 166-386 31-216 (350)
134 1w8a_A SLIT protein; signaling 99.3 1.3E-12 4.4E-17 115.3 3.4 129 219-386 11-140 (192)
135 2wfh_A SLIT homolog 2 protein 99.3 1.5E-12 5E-17 115.0 3.6 141 250-430 12-153 (193)
136 1ds9_A Outer arm dynein; leuci 99.3 7.1E-14 2.4E-18 124.0 -5.0 141 272-447 40-186 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4.1E-17 113.7 2.7 132 248-418 19-154 (176)
138 2o6r_A Variable lymphocyte rec 99.2 3.9E-12 1.3E-16 110.5 4.6 144 248-430 7-152 (177)
139 2wfh_A SLIT homolog 2 protein 99.2 6.3E-12 2.1E-16 110.9 4.8 126 219-385 13-139 (193)
140 2o6r_A Variable lymphocyte rec 99.2 1.1E-11 3.6E-16 107.8 5.0 110 248-386 28-138 (177)
141 4ay9_X Follicle-stimulating ho 99.2 1.4E-13 4.9E-18 133.3 -9.0 217 169-444 13-234 (350)
142 1ds9_A Outer arm dynein; leuci 99.2 1.7E-13 5.9E-18 121.5 -7.8 108 247-386 47-154 (198)
143 3sb4_A Hypothetical leucine ri 99.1 1.7E-11 5.9E-16 117.6 1.8 103 307-440 224-328 (329)
144 3e4g_A ATP synthase subunit S, 99.1 1.1E-10 3.7E-15 100.0 6.3 93 309-420 61-156 (176)
145 3g39_A Variable lymphocyte rec 99.1 9.7E-11 3.3E-15 101.0 5.1 118 282-430 11-130 (170)
146 3g39_A Variable lymphocyte rec 99.0 8.2E-11 2.8E-15 101.4 2.8 109 309-448 9-117 (170)
147 2r9u_A Variable lymphocyte rec 99.0 2.2E-10 7.5E-15 99.2 4.2 104 283-418 15-119 (174)
148 2r9u_A Variable lymphocyte rec 99.0 2.1E-10 7.3E-15 99.2 3.4 107 310-448 13-120 (174)
149 3sb4_A Hypothetical leucine ri 98.8 7.4E-10 2.5E-14 106.1 0.5 87 343-449 225-313 (329)
150 3e4g_A ATP synthase subunit S, 98.8 7.6E-09 2.6E-13 88.5 5.6 40 345-388 115-156 (176)
151 2ifg_A High affinity nerve gro 98.7 8.3E-09 2.8E-13 99.4 3.8 116 283-429 11-129 (347)
152 2ifg_A High affinity nerve gro 98.6 2.1E-08 7.2E-13 96.6 4.8 105 251-386 11-117 (347)
153 4fdw_A Leucine rich hypothetic 98.6 2.3E-09 8E-14 105.4 -3.1 223 166-447 136-359 (401)
154 3rw6_A Nuclear RNA export fact 98.1 2.1E-06 7.2E-11 78.8 5.2 44 306-358 167-210 (267)
155 4fdw_A Leucine rich hypothetic 98.1 1.5E-07 5.1E-12 92.5 -3.0 223 166-444 158-381 (401)
156 3rw6_A Nuclear RNA export fact 98.1 9.6E-06 3.3E-10 74.4 9.2 86 277-378 167-257 (267)
157 3rfe_A Platelet glycoprotein I 95.3 0.007 2.4E-07 48.8 2.2 35 345-384 32-67 (130)
158 4fs7_A Uncharacterized protein 94.9 0.002 6.8E-08 62.7 -2.6 81 342-443 295-376 (394)
159 1fs1_A SKP2 F-BOX, cyclin A/CD 94.7 0.017 5.9E-07 38.1 2.6 23 18-40 7-29 (53)
160 4fs7_A Uncharacterized protein 94.5 0.0073 2.5E-07 58.6 0.4 104 276-414 272-376 (394)
161 4gt6_A Cell surface protein; l 94.4 0.041 1.4E-06 53.3 5.6 130 275-445 260-390 (394)
162 4gt6_A Cell surface protein; l 94.0 0.037 1.3E-06 53.5 4.3 126 247-416 264-390 (394)
163 3rfe_A Platelet glycoprotein I 93.4 0.047 1.6E-06 43.8 3.2 69 283-369 11-81 (130)
164 2e31_A FBS1, F-box only protei 92.5 0.14 4.7E-06 47.2 5.2 65 18-103 49-119 (297)
165 4h09_A Hypothetical leucine ri 88.9 0.2 7E-06 47.9 3.0 59 342-413 284-342 (379)
166 4h09_A Hypothetical leucine ri 87.8 0.12 4.1E-06 49.5 0.5 104 247-382 239-343 (379)
167 3l2o_B F-box only protein 4; s 77.1 0.98 3.3E-05 41.3 2.0 24 19-42 4-27 (312)
168 3v7d_B Cell division control p 76.1 1 3.5E-05 43.8 2.0 23 18-40 13-35 (464)
169 2ovr_B FBW7, F-BOX/WD repeat p 61.8 4.3 0.00015 39.1 3.0 25 18-42 17-41 (445)
170 1p22_A F-BOX/WD-repeat protein 58.6 3.1 0.0001 40.1 1.3 24 18-41 9-36 (435)
171 4hfx_A Transcription elongatio 24.4 1.1E+02 0.0037 22.6 4.5 53 18-103 20-72 (97)
No 1
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.94 E-value=2.2e-26 Score=225.11 Aligned_cols=266 Identities=16% Similarity=0.128 Sum_probs=217.0
Q ss_pred ccceeccccccchHHH-----hhhhcCC-CccEEEeccccChHHHHHHHHHHHhc-CCCccEEEcCCCCCChhHHHHHHH
Q 012930 166 YARCLRLQNALCVEET-----CQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQN-SETLASLEFLHCKLSPSFVEGICR 238 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~-----~~l~~~~-~L~~L~Ls~~~~~~~~~~~~~~l~~~-~~~L~~L~L~~n~l~~~~~~~l~~ 238 (453)
.++.|+++++...... ..+...+ +|++|+|++|.+.......+..+... .++|++|+|++|.+++.++..++.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4777888877766533 5566777 89999999999776533333333344 489999999999999999999998
Q ss_pred HhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcC-CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930 239 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 317 (453)
Q Consensus 239 ~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 317 (453)
.+... .++|++|++++|.++..+.. .+...+.. +++|++|+|++|.+++.++..++.++....++|++|+|+
T Consensus 103 ~l~~~---~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 103 TLAAI---PFTITVLDLGWNDFSSKSSS----EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHTS---CTTCCEEECCSSCGGGSCHH----HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhC---CCCccEEECcCCcCCcHHHH----HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 87764 27899999999999986654 67777777 469999999999999989999988876654599999999
Q ss_pred CCCCCCcccccCcCchHHhhcCCCCC-CcccEEEecCCCCChhhHHHHHHHHhC-CCCccEEeCCCCCCChhHHHhHHHH
Q 012930 318 GNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPY 395 (453)
Q Consensus 318 ~n~l~~~~~~~~~~~l~~~l~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~l~~~ 395 (453)
+|.+++.++ ..+...+. .+ ++|++|+|++|.|++.|+..++..+.. .++|+.|+|++|.|++.|+..+.
T Consensus 176 ~n~l~~~~~----~~l~~~l~---~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-- 246 (362)
T 3goz_A 176 GNNLASKNC----AELAKFLA---SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-- 246 (362)
T ss_dssp TSCGGGSCH----HHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH--
T ss_pred CCCCchhhH----HHHHHHHH---hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH--
Confidence 999986443 22444555 44 599999999999999999999999987 45999999999999998887765
Q ss_pred HHhhcCCCCCccEEEccCCC---CChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 396 FVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 396 l~~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
..+..+++|++|+|++|. ++..+...+...+.. .++|+.||+++|+|++..+
T Consensus 247 --~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 247 --LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp --HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGC
T ss_pred --HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcch
Confidence 446778999999999998 888888888888887 5669999999999998743
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.5e-25 Score=226.09 Aligned_cols=265 Identities=24% Similarity=0.251 Sum_probs=160.0
Q ss_pred cceeccccccch-----HHHhhhhcCCCccEEEeccccChHH-HHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHh
Q 012930 167 ARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 240 (453)
Q Consensus 167 l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~~~~~~~-~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L 240 (453)
++.|+++++.+. .++..+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.++..+...+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 555555555444 2344444555566666665554433 2222222233344566666666655555555555444
Q ss_pred hccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930 241 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 319 (453)
Q Consensus 241 ~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 319 (453)
.. +++|++|++++|.+++.+.. .+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|
T Consensus 167 ~~----~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 167 RA----KPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN 237 (461)
T ss_dssp HH----CTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSS
T ss_pred hh----CCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCC
Confidence 44 25556666665555442111 2222222 2445666666666655554444444432 2356666666666
Q ss_pred CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhh
Q 012930 320 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399 (453)
Q Consensus 320 ~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~ 399 (453)
.+++.+. ..++..+. ..+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|...+...+
T Consensus 238 ~l~~~~~----~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--- 308 (461)
T 1z7x_W 238 KLGDVGM----AELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL--- 308 (461)
T ss_dssp BCHHHHH----HHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---
T ss_pred cCChHHH----HHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---
Confidence 5553211 11222222 14678888888888888888888888888888888888888888888877776532
Q ss_pred cCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 400 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 400 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
....++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccH
Confidence 2334688999999999988888888888888 5669999999998887654
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.4e-25 Score=226.42 Aligned_cols=263 Identities=21% Similarity=0.238 Sum_probs=160.8
Q ss_pred ccceeccccccch-----HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCC----CccEEEcCCCCCChhHHHHH
Q 012930 166 YARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE----TLASLEFLHCKLSPSFVEGI 236 (453)
Q Consensus 166 ~l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~----~L~~L~L~~n~l~~~~~~~l 236 (453)
.++.++++++... .++..+..+++|++|+|++|.+..... ..+...++ +|++|+|++|.+++.+...+
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3455555554443 233444555666666666665443221 11122222 46666666666666555555
Q ss_pred HHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEE
Q 012930 237 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD 315 (453)
Q Consensus 237 ~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~ 315 (453)
...+.. +++|++|++++|.+++.+.. .+...+. ..++|++|++++|.+++..+..+...+.. +++|++|+
T Consensus 106 ~~~l~~----~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~ 176 (461)
T 1z7x_W 106 SSTLRT----LPTLQELHLSDNLLGDAGLQ----LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELT 176 (461)
T ss_dssp HHHTTS----CTTCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHcc----CCceeEEECCCCcCchHHHH----HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEE
Confidence 555444 35566666666665542111 2333222 24456666666666666555555544433 35666666
Q ss_pred cCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHH
Q 012930 316 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 395 (453)
Q Consensus 316 Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 395 (453)
+++|.+++.++ ..++..+.. ..++|++|++++|.+++.++..++..+..+++|++|++++|.+++.|+..+.+.
T Consensus 177 L~~n~i~~~~~----~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 177 VSNNDINEAGV----RVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp CCSSBCHHHHH----HHHHHHHHH--SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCCCcchHHH----HHHHHHHhc--CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 66666554221 112222221 235788888888888888888888888888899999999999988888888763
Q ss_pred HHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 396 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 396 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
+ ...+++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus 251 ~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 251 L---LHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGA 301 (461)
T ss_dssp H---TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHH
T ss_pred H---hcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHH
Confidence 3 4456888888888888888888888888877 4568888888888876543
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.94 E-value=1.5e-25 Score=221.08 Aligned_cols=266 Identities=16% Similarity=0.127 Sum_probs=208.9
Q ss_pred ccceeccccccchH-----HHhhhhcCCCccEEEeccccCh---H----HHHHHHHHHHhcCCCccEEEcCCCCCChhHH
Q 012930 166 YARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFE---E----HVQALCKLLIQNSETLASLEFLHCKLSPSFV 233 (453)
Q Consensus 166 ~l~~l~L~~~~~~~-----~~~~l~~~~~L~~L~Ls~~~~~---~----~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~ 233 (453)
.++.|+++++.+.. +...+..+++|++|+|++|.+. . .+..+ ...+..+++|++|+|++|.+++.+.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-HHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH-HHHHhhCCcccEEECCCCcCCHHHH
Confidence 57778888776654 3344567899999999997432 1 22222 2334578999999999999999887
Q ss_pred HHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCC---------CCccEEEcCCCCCChhHHHHHHHHH
Q 012930 234 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSL 304 (453)
Q Consensus 234 ~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~---------~~L~~L~L~~n~l~~~~~~~l~~~L 304 (453)
..+...+.. +++|++|++++|.++..+ +..++..+..+ ++|++|+|++|++++.....++..+
T Consensus 112 ~~l~~~l~~----~~~L~~L~L~~n~l~~~~----~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 112 EPLIDFLSK----HTPLEHLYLHNNGLGPQA----GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp HHHHHHHHH----CTTCCEEECCSSCCHHHH----HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred HHHHHHHHh----CCCCCEEECcCCCCCHHH----HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 777777665 489999999999997632 23566666666 8999999999999977777777765
Q ss_pred hhCCCCCCEEEcCCCCCCCcccccCcCchHH-hhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930 305 LEASSSLSILDLSGNSIGGWLSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 383 (453)
Q Consensus 305 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 383 (453)
.. +++|++|++++|.+++.+. ..+.. .+. .+++|++|+|++|.+++.|+..++..+..+++|+.|+|++|.
T Consensus 184 ~~-~~~L~~L~L~~n~l~~~g~----~~l~~~~l~---~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QS-HRLLHTVKMVQNGIRPEGI----EHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HH-CTTCCEEECCSSCCCHHHH----HHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Hh-CCCcCEEECcCCCCCHhHH----HHHHHHHhh---cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 44 5899999999999984321 11112 444 678999999999999999999999999999999999999999
Q ss_pred CChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 384 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 384 i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|++.|+..+...+. .+.+++|++|+|++|.|+..|+..++..+....++|++|++++|.|++.++
T Consensus 256 i~~~~~~~l~~~l~--~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 256 LSARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCHHHHHHHHHHHH--TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CchhhHHHHHHHHh--hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999888765321 144799999999999999999999999884423669999999999998763
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.94 E-value=3.1e-25 Score=218.77 Aligned_cols=232 Identities=22% Similarity=0.206 Sum_probs=111.9
Q ss_pred hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc-----CCcceeEEEccCCC
Q 012930 185 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISS 259 (453)
Q Consensus 185 ~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~-----~~~~L~~L~L~~n~ 259 (453)
..+++|++|+|++|.+.......+...+..+++|++|+|++|.+++.++..++..+..... ..++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4445555555555554432222222233445555555555555555555555544332100 00455555555555
Q ss_pred CCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcC
Q 012930 260 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 339 (453)
Q Consensus 260 l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 339 (453)
++..++. .+...+..+++|++|++++|.+++.+...++...+..+++|+.|+|++|.+++. +...++..+.
T Consensus 171 l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~- 241 (386)
T 2ca6_A 171 LENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALK- 241 (386)
T ss_dssp CTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGG-
T ss_pred CCcHHHH----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHc-
Confidence 5532222 333445555555555555555555444444441223345555555555555421 1112333343
Q ss_pred CCCCCcccEEEecCCCCChhhHHHHHHHHhC--CCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012930 340 GKSLQSLRLLNLRGNNLCKADARDLGSALVH--IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417 (453)
Q Consensus 340 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 417 (453)
.+++|++|+|++|.+++.|+..++..+.. +++|+.|+|++|.|++.|+..+...+ ..++++|++|++++|.++
T Consensus 242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---HHHCTTCCEEECTTSBSC
T ss_pred --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---HhcCCCceEEEccCCcCC
Confidence 34555555555555555555555555533 55555555555555555554444321 123355555555555555
Q ss_pred hhh--HHHHHHHHhc
Q 012930 418 GRG--VSQLLDTLST 430 (453)
Q Consensus 418 ~~~--~~~l~~~l~~ 430 (453)
..+ +..+...+..
T Consensus 317 ~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 317 EEDDVVDEIREVFST 331 (386)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhhh
Confidence 554 3444444444
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=2.7e-25 Score=217.28 Aligned_cols=257 Identities=19% Similarity=0.175 Sum_probs=207.5
Q ss_pred ccccccchHHHhhhhcC-CCccEEEeccccChHHHHHHHHHHHhcCC-CccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930 171 RLQNALCVEETCQLLRE-SKLQSLVLRWIRFEEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 248 (453)
Q Consensus 171 ~L~~~~~~~~~~~l~~~-~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~ 248 (453)
+++.+........+... .+|++|+|++|.+.......+...+..++ +|++|+|++|.+++.++..++..+... ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~ 80 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI---PA 80 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CC
Confidence 44555555444444444 66999999999977654433444456777 899999999999999999999987764 38
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCC-CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
+|++|++++|.++..+.. .+...+..+ ++|++|+|++|.+++..+..++.++...+++|++|+|++|.+++.+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-- 154 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-- 154 (362)
T ss_dssp TCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--
T ss_pred CccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--
Confidence 899999999999985544 677778888 8999999999999998888888876553479999999999998533
Q ss_pred cCcCchHHhhcCCCCCC-cccEEEecCCCCChhhHHHHHHHHhCCC-CccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 328 YDRSGPLFSLGAGKSLQ-SLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
...++..+. ..+ +|++|+|++|++++.+...+...+..++ +|+.|+|++|.|++.|+..+...+. ...++
T Consensus 155 --~~~l~~~l~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~---~~~~~ 226 (362)
T 3goz_A 155 --SDELIQILA---AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNH 226 (362)
T ss_dssp --HHHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH---HSCTT
T ss_pred --HHHHHHHHh---cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh---cCCCC
Confidence 333556665 334 8999999999999999989999999885 9999999999999999888876431 22369
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 445 (453)
|++|+|++|.|++.|+..+...+.. .++|++|++++|.+
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~-l~~L~~L~L~~n~l 265 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDS-LKHLQTVYLDYDIV 265 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTT-TTTCSEEEEEHHHH
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhc-CCCccEEEeccCCc
Confidence 9999999999999999888877777 56699999999983
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3e-23 Score=200.44 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=173.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.+++.++.....+..+..+++|++|++++|.+... .....+..+++|++|+|++|.+++..+..++.
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~------- 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------- 140 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence 35556666665555444566779999999999986533 12334678899999999999999888887765
Q ss_pred CCcceeEEEccCC-CCCCCCchhhHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCC-CCCEEEcCCC--C
Q 012930 246 RIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S 320 (453)
Q Consensus 246 ~~~~L~~L~L~~n-~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n--~ 320 (453)
+++|++|++++| .+++ ..++..+..+++|++|++++| .+++.....+.. .++ +|++|++++| .
T Consensus 141 -~~~L~~L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 141 -NSNLVRLNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN 208 (336)
T ss_dssp -CTTCSEEECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred -CCCCCEEECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence 588999999999 6665 136677888999999999999 998765444333 367 9999999999 4
Q ss_pred CCCcccccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHhCCCCccEEeCCCC-CCChhHHHhHHHHHHh
Q 012930 321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQ 398 (453)
Q Consensus 321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~ 398 (453)
+++. .++..+. .+++|++|++++|. +++. .+..+..+++|+.|++++| .+++.++.
T Consensus 209 ~~~~-------~l~~~~~---~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------- 266 (336)
T 2ast_B 209 LQKS-------DLSTLVR---RCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETLL-------- 266 (336)
T ss_dssp SCHH-------HHHHHHH---HCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGG--------
T ss_pred CCHH-------HHHHHHh---hCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHHH--------
Confidence 5531 1445555 57899999999998 7774 3446778899999999999 57765532
Q ss_pred hcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 399 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 399 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
.+..+++|++|++++| +++.+...+... +..|++++|.+++..|.
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCTTCS
T ss_pred HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccccCC
Confidence 2455789999999999 888766655433 45566899999886654
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.2e-23 Score=225.51 Aligned_cols=245 Identities=22% Similarity=0.226 Sum_probs=165.2
Q ss_pred cceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 167 ARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 167 l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
++.++++++... ..+..+..+++|+.|++++|.+...... .+..+++|++|++++|.+++..+..+..
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~------- 488 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSN------- 488 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGG-------
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhc-------
Confidence 444555554443 2334444555555555555554322211 1345566666666666666544444432
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|++|++++|.+++ .++..+..+++|++|+|++|++.+..+..+ ..+++|+.|++++|.+++..
T Consensus 489 -l~~L~~L~L~~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 489 -CTNLNWISLSNNRLTG--------EIPKWIGRLENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp -CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GGCTTCCEEECCSSEEESBC
T ss_pred -CCCCCEEEccCCccCC--------cCChHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCCCEEECCCCccCCcC
Confidence 4667777777777765 455566677777777777777776666554 34677888888888776654
Q ss_pred cccCcCc--------------------------------------hHHhh---------------------cCCCCCCcc
Q 012930 326 SKYDRSG--------------------------------------PLFSL---------------------GAGKSLQSL 346 (453)
Q Consensus 326 ~~~~~~~--------------------------------------l~~~l---------------------~~~~~~~~L 346 (453)
|...... .+..+ ..+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4211100 00000 012345789
Q ss_pred cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930 347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 426 (453)
Q Consensus 347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 426 (453)
++|+|++|++++ .+|..++.++.|+.|+|++|.+++. +| ..++.++.|+.|+|++|+++.. ++.
T Consensus 635 ~~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~-----ip---~~l~~L~~L~~LdLs~N~l~g~----ip~ 698 (768)
T 3rgz_A 635 MFLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGS-----IP---DEVGDLRGLNILDLSSNKLDGR----IPQ 698 (768)
T ss_dssp CEEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCEEC----CCG
T ss_pred cEEECcCCcccc----cCCHHHhccccCCEEeCcCCccCCC-----CC---hHHhCCCCCCEEECCCCcccCc----CCh
Confidence 999999999997 5888999999999999999999864 77 6788899999999999999975 677
Q ss_pred HHhcCCCCCcEEECcCCCCCcccccCC
Q 012930 427 TLSTLRRPPTSLSIADNNLGRFCANSG 453 (453)
Q Consensus 427 ~l~~~~~~L~~L~Ls~N~l~~~~~~~~ 453 (453)
.+..+ +.|++||+++|++++.+|..|
T Consensus 699 ~l~~l-~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 699 AMSAL-TMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGGC-CCCSEEECCSSEEEEECCSSS
T ss_pred HHhCC-CCCCEEECcCCcccccCCCch
Confidence 88885 569999999999999988653
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.87 E-value=7.2e-22 Score=193.03 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=85.4
Q ss_pred CCccEEEeccccChHHHH-HHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCch
Q 012930 188 SKLQSLVLRWIRFEEHVQ-ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~-~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~ 266 (453)
+.|++|+|++|.++.... .+...+....++|++|+|++|.+++.++..++..+ .+|++|++++|.+++.++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-------~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-------HTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-------HhccHhhcCCCCCCHHHHH
Confidence 445555555555443322 22222222334555555555555555555554442 3345555555555442222
Q ss_pred hhHHHHHHhhc-CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 267 SVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 267 ~i~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
.+...+. .+++|++|+|++|.+++.+...++.++.. +++|++|+|++|.|++.+ ...++..+. .+++
T Consensus 145 ----~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g----~~~L~~~L~---~~~~ 212 (372)
T 3un9_A 145 ----DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEG----LELLAAQLD---RNRQ 212 (372)
T ss_dssp ----HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHH----HHHHHHHGG---GCSC
T ss_pred ----HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHH----HHHHHHHHh---cCCC
Confidence 3333332 24455555555555555444444444432 244555555555544321 111223333 2234
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhH
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 392 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l 392 (453)
|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..+
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 55555555555555554555555455555555555555555554444
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.7e-24 Score=204.24 Aligned_cols=231 Identities=18% Similarity=0.164 Sum_probs=153.3
Q ss_pred ccceeccccccch---HHHhhhhcCCCccEEEecc-ccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhh
Q 012930 166 YARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 241 (453)
Q Consensus 166 ~l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~ 241 (453)
.++.++++++.+. .++..+..+++|++|++++ |.+....+. .+..+++|++|+|++|.+++..+..+..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--- 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQ--- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGG---
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhC---
Confidence 4566666666555 3556667778888888874 654432222 1456778888888888777555555443
Q ss_pred ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCC-CCCEEEcCCCC
Q 012930 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNS 320 (453)
Q Consensus 242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~ 320 (453)
+.+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..+. +|++|++++|.
T Consensus 124 -----l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 124 -----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNR 185 (313)
T ss_dssp -----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSE
T ss_pred -----CCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCe
Confidence 5778888888887775 355566777888888888887776555544 2344 77888888887
Q ss_pred CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhc
Q 012930 321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 400 (453)
Q Consensus 321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l 400 (453)
+++..+ ..+. .+. |++|++++|.+++ .++..+..+++|+.|++++|.++.. .| .+
T Consensus 186 l~~~~~--------~~~~---~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~----~~ 240 (313)
T 1ogq_A 186 LTGKIP--------PTFA---NLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD-----LG----KV 240 (313)
T ss_dssp EEEECC--------GGGG---GCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB-----GG----GC
T ss_pred eeccCC--------hHHh---CCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee-----cC----cc
Confidence 775444 4555 233 7788888887765 3556677777888888888877642 32 25
Q ss_pred CCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 401 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 401 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
..+++|++|+|++|+|+.. ++..+..+ ++|++|++++|.|++.+|.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGT----LPQGLTQL-KFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCCTTCCEEECCSSCCEEC----CCGGGGGC-TTCCEEECCSSEEEEECCC
T ss_pred cccCCCCEEECcCCcccCc----CChHHhcC-cCCCEEECcCCcccccCCC
Confidence 5667788888888877643 45556663 4588888888877766654
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1e-22 Score=218.17 Aligned_cols=233 Identities=24% Similarity=0.272 Sum_probs=173.0
Q ss_pred ccceeccccccch-HHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.+++.++... .++..+..+++|+.|++++|.+...... .+..+++|++|++++|.+++..+..+..
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~~~~------ 464 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMY------ 464 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGG------
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH----HHhcCCCCCEEECCCCcccCcCCHHHcC------
Confidence 3666777766655 3556677778888888888875533222 2456778888888888887666555543
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.++. .++..+..+++|++|+|++|++.+..+..+ ..+++|++|++++|.+++.
T Consensus 465 --l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 465 --VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp --CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEE
T ss_pred --CCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCc
Confidence 5778888888888876 456667788888888888888887666654 3468888888888888765
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHH-------------------------------------
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA------------------------------------- 367 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------------------------- 367 (453)
.| ..++ .+++|++|++++|+++. .+|..
T Consensus 530 ~p--------~~l~---~l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 530 IP--------AELG---DCRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CC--------GGGG---GCTTCCEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CC--------HHHc---CCCCCCEEECCCCccCC----cCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 54 6666 66888999999887763 12322
Q ss_pred ---------------------------------HhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC
Q 012930 368 ---------------------------------LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 414 (453)
Q Consensus 368 ---------------------------------l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 414 (453)
+..+++|+.|||++|++++. +| ..++.++.|+.|+|++|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip---~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IP---KEIGSMPYLFILNLGHN 666 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-----CC---GGGGGCTTCCEEECCSS
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-----CC---HHHhccccCCEEeCcCC
Confidence 23356788999999998864 66 66888899999999999
Q ss_pred CCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 415 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 415 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
+++.. ++..+..+ +.|++|||++|++++.+|.
T Consensus 667 ~l~g~----ip~~l~~L-~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 667 DISGS----IPDEVGDL-RGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCSC----CCGGGGGC-TTCCEEECCSSCCEECCCG
T ss_pred ccCCC----CChHHhCC-CCCCEEECCCCcccCcCCh
Confidence 99865 67788885 5699999999999988775
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.2e-21 Score=197.32 Aligned_cols=255 Identities=17% Similarity=0.122 Sum_probs=128.1
Q ss_pred ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHH-HHHHhhcc
Q 012930 166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG-ICRSLCSK 243 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l~~~L~~~ 243 (453)
.++.|+++++..... +..+.++++|++|++++|.+...... ...+..+++|++|+|++|.++...+.. +..
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 152 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLN----- 152 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-----
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcccccCC-----
Confidence 355566665555443 33445556666666666654432110 011334556666666666555443322 111
Q ss_pred ccCCcceeEEEccCCCCCCCCch--------------------------hhHHHHHHhhcCCCCccEEEcCCCCCChhHH
Q 012930 244 RKRIHKIENLSIDISSFIENCPS--------------------------SVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 297 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~--------------------------~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 297 (453)
+++|++|++++|.++..... .+.......+..+++|++|++++|.+.+..+
T Consensus 153 ---l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 153 ---MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp ---CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred ---CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 35555555555555442211 1111111223345678888888888777666
Q ss_pred HHHHHHHhh----------------------------------CCCCCCEEEcCCCCCCCcccccCc------------C
Q 012930 298 RMVFSSLLE----------------------------------ASSSLSILDLSGNSIGGWLSKYDR------------S 331 (453)
Q Consensus 298 ~~l~~~L~~----------------------------------~~~~L~~L~Ls~n~l~~~~~~~~~------------~ 331 (453)
..+...+.. ..++|++|++++|.+++..+.... .
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 666543110 012444555555444432220000 0
Q ss_pred ----chHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 332 ----GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 332 ----~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+..+. .+++|++|+|++|.+++ ..+..+..+++|+.|+|++|.+++. .| ..+..+++|+
T Consensus 310 ~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~ 374 (455)
T 3v47_A 310 EINKIDDNAFW---GLTHLLKLNLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRAL-----GD---QSFLGLPNLK 374 (455)
T ss_dssp CCCEECTTTTT---TCTTCCEEECCSSCCCE----ECGGGGTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCC
T ss_pred cccccChhHhc---CcccCCEEECCCCccCC----cChhHhcCcccCCEEECCCCccccc-----Ch---hhcccccccc
Confidence 0012222 45666666666666655 2344556666677777777766652 22 4456667777
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
+|++++|+|+.. ....+.. .++|++|++++|++++..+
T Consensus 375 ~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccC----CHhHhcc-CCcccEEEccCCCcccCCC
Confidence 777777776653 1222334 2447777777777766554
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=4.3e-21 Score=193.18 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=59.9
Q ss_pred ccceeccccccch-HH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHH--HHHHhh
Q 012930 166 YARCLRLQNALCV-EE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG--ICRSLC 241 (453)
Q Consensus 166 ~l~~l~L~~~~~~-~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~--l~~~L~ 241 (453)
.++.|+++++... .+ +..+.++++|++|+|++|.+...... .+..+++|++|+|++|.+++..+.. +..
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--- 127 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKP--- 127 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTT---
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccC---
Confidence 4566666665443 12 23345556666666666664433211 1345566666666666666543332 221
Q ss_pred ccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHHH
Q 012930 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFGR 298 (453)
Q Consensus 242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~ 298 (453)
+++|++|++++|.++.. .+. .+.++++|++|++++|.+.+..+.
T Consensus 128 -----l~~L~~L~L~~n~l~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 128 -----LTSLEMLVLRDNNIKKI--------QPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp -----CTTCCEEECCSSBCCSC--------CCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred -----cccCCEEECCCCccCcc--------CcccccCCCCcccEEeCCCCcccccChh
Confidence 45666666666666551 122 245566666666666666554333
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.84 E-value=5.8e-20 Score=179.53 Aligned_cols=212 Identities=17% Similarity=0.139 Sum_probs=171.2
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 295 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~ 295 (453)
+.|++|+|++|.|++.....++..+... +++|++|+|++|.+++.++. .+. ..+++|++|+|++|.+++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~---~~~L~~L~Ls~n~l~~~~~~----~l~---~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG---RHALDEVNLASCQLDPAGLR----TLL---PVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC---SSCEEEEECTTCCCCHHHHH----HTH---HHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC---CCCceEEEecCCCCCHHHHH----HHH---HHHHhccHhhcCCCCCCHH
Confidence 5799999999999999999999988865 47899999999999873332 222 2345899999999999999
Q ss_pred HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930 296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 375 (453)
Q Consensus 296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 375 (453)
++..++.++....++|++|+|++|.|++. ++..++..+. .+++|++|+|++|.|++.|+..++.++..+++|+
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~L~---~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAA----GVAVLMEGLA---GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHH----HHHHHHHHHH---TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChH----HHHHHHHHHh---cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 99999998877679999999999999853 2334556666 5688999999999999999999999999999999
Q ss_pred EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE--CcCCCCCcc
Q 012930 376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS--IADNNLGRF 448 (453)
Q Consensus 376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~N~l~~~ 448 (453)
+|+|++|.|++.|+..++.. +..+++|++|+|++|.|++.|+..+..........|+.+. +..|.++++
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~----L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARA----AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHH----HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred eEECCCCCCCHHHHHHHHHH----HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 99999999999998888754 5566899999999999999999988775443112388888 888877654
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3e-21 Score=186.05 Aligned_cols=229 Identities=17% Similarity=0.185 Sum_probs=122.0
Q ss_pred ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....+ +..+..+++|++|++++|.+...... ..++|++|++++|.++...+..+..
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~------ 143 (330)
T 1xku_A 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNG------ 143 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTT------
T ss_pred CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccCHhHhcC------
Confidence 355555555554443 33444555555555555554321110 1145555666655555544444432
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|+.|++++|.+...+ ..+..+..+++|++|++++|.+.. .+..+ .++|++|++++|.+++.
T Consensus 144 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 144 --LNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIADTNITT-IPQGL-------PPSLTELHLDGNKITKV 207 (330)
T ss_dssp --CTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCSSCCCS-CCSSC-------CTTCSEEECTTSCCCEE
T ss_pred --CccccEEECCCCcCCccC------cChhhccCCCCcCEEECCCCcccc-CCccc-------cccCCEEECCCCcCCcc
Confidence 355666666666554211 122344555666666666666554 22211 24566666666666543
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ ..+. .+++|++|++++|.+++. .+..+..+++|+.|++++|.++. +| ..+..++
T Consensus 208 ~~--------~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp---~~l~~l~ 263 (330)
T 1xku_A 208 DA--------ASLK---GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK------VP---GGLADHK 263 (330)
T ss_dssp CT--------GGGT---TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS------CC---TTTTTCS
T ss_pred CH--------HHhc---CCCCCCEEECCCCcCcee----ChhhccCCCCCCEEECCCCcCcc------CC---hhhccCC
Confidence 22 3343 556777777777777752 23356667777777777777764 44 4456667
Q ss_pred CccEEEccCCCCChhhHHHHHHHHh-cCCCCCcEEECcCCCCCc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLS-TLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~ 447 (453)
+|++|++++|+|+..+...+..... .....|+.|++++|.++.
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7777777777776643222111000 002346777777777653
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=8.5e-21 Score=184.67 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=144.8
Q ss_pred ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....++. .+.++++|++|++++|.+...... .+.++++|++|++++|.++......+..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKP------ 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTT------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCC------
Confidence 57777777777666554 456678888888888876543222 2456778888888888887655554433
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCC-CChhHHHHHHHHHhhCCCCCCEEEcCCCCC
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSI 321 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l 321 (453)
+++|++|++++|.++. ++. .+..+++|++|++++|. +....+..+ ..+++|++|++++|.+
T Consensus 123 --l~~L~~L~L~~n~l~~---------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 123 --LSSLTFLNLLGNPYKT---------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDL 186 (353)
T ss_dssp --CTTCSEEECTTCCCSS---------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTC
T ss_pred --CccCCEEECCCCCCcc---------cCchhhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCc
Confidence 5778888888888775 222 45677888888888873 554323222 3467788888888887
Q ss_pred CCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChh-------------
Q 012930 322 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDD------------- 387 (453)
Q Consensus 322 ~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~------------- 387 (453)
++..+ ..+. .+++|++|++++|.++. ++. .+..+++|+.|++++|.+++.
T Consensus 187 ~~~~~--------~~l~---~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 187 QSYEP--------KSLK---SIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp CEECT--------TTTT---TCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CccCH--------HHHh---ccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 76433 3344 56778888888887765 343 334567777777777776652
Q ss_pred --------------HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHH-hcCCCCCcEEECcCCCCCcc
Q 012930 388 --------------GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 388 --------------g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~ 448 (453)
++..+ | ..+..+++|++|++++|+|+. ++..+ .. .++|++|++++|++...
T Consensus 251 l~~l~L~~~~l~~~~l~~l-~---~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~-l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQV-M---KLLNQISGLLELEFSRNQLKS-----VPDGIFDR-LTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEEEESCBCCHHHHHHH-H---HHHHTCTTCCEEECCSSCCCC-----CCTTTTTT-CTTCCEEECCSSCBCCC
T ss_pred hhccccccccccCcchhhh-H---HHHhcccCCCEEECCCCCCCc-----cCHHHHhc-CCCCCEEEeeCCCccCc
Confidence 22222 1 234455666666666666654 23332 33 23466666666666554
No 17
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=1.4e-21 Score=186.82 Aligned_cols=219 Identities=17% Similarity=0.082 Sum_probs=160.3
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
.+++|++|++++|.+.......+ +...+++|++|+|++|.+++. +..+....... .++|++|++++|.++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~---~~~L~~L~L~~N~l~~--- 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWL---KPGLKVLSIAQAHSLN--- 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTC---CTTCCEEEEESCSCCC---
T ss_pred CcCCccEEEccCCcccchhHHHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhh---cCCCcEEEeeCCCCcc---
Confidence 67999999999999764322110 025789999999999999876 55554421111 2789999999999988
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
..+..+..+++|++|+|++|++.+.... +....+..+++|++|++++|.+++... ++..+. ..+++
T Consensus 164 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~--~~l~~ 229 (312)
T 1wwl_A 164 -----FSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGMETPSG------VCSALA--AARVQ 229 (312)
T ss_dssp -----CCTTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCCCHHH------HHHHHH--HTTCC
T ss_pred -----chHHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCcchHH------HHHHHH--hcCCC
Confidence 3446778999999999999998764221 111112567999999999999985221 222221 15689
Q ss_pred ccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHH
Q 012930 346 LRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 424 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 424 (453)
|++|++++|++++. .+ ..+..+++|+.|+|++|.|+. +| ..+. ++|++|+|++|+|++.
T Consensus 230 L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~~------ip---~~~~--~~L~~L~Ls~N~l~~~----- 289 (312)
T 1wwl_A 230 LQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLKQ------VP---KGLP--AKLSVLDLSYNRLDRN----- 289 (312)
T ss_dssp CSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCSS------CC---SSCC--SEEEEEECCSSCCCSC-----
T ss_pred CCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccCh------hh---hhcc--CCceEEECCCCCCCCC-----
Confidence 99999999999873 22 334567899999999999985 66 3344 7999999999999884
Q ss_pred HHHHhcCCCCCcEEECcCCCCCccc
Q 012930 425 LDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 425 ~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+. +..+ ++|++|++++|+|++.+
T Consensus 290 p~-~~~l-~~L~~L~L~~N~l~~~~ 312 (312)
T 1wwl_A 290 PS-PDEL-PQVGNLSLKGNPFLDSE 312 (312)
T ss_dssp CC-TTTS-CEEEEEECTTCTTTCCC
T ss_pred hh-HhhC-CCCCEEeccCCCCCCCC
Confidence 33 5553 55999999999998853
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.9e-22 Score=190.36 Aligned_cols=224 Identities=19% Similarity=0.190 Sum_probs=148.6
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++.+..++..+..+++|++|+|++|.+.. ++ ..+..+++|++|+|++|.++ ..+..+..
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~------- 148 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LP----DTMQQFAGLETLTLARNPLR-ALPASIAS------- 148 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CC----SCGGGGTTCSEEEEESCCCC-CCCGGGGG-------
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hh----HHHhccCCCCEEECCCCccc-cCcHHHhc-------
Confidence 5667777777776677777777788888888877652 21 12356677888888888776 33333332
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhh---------cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFL---------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 316 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l---------~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~L 316 (453)
+.+|++|++++|.+.. .++..+ .++++|++|+|++|.++. .+..+ ..+++|++|++
T Consensus 149 -l~~L~~L~L~~n~~~~--------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l-----~~l~~L~~L~L 213 (328)
T 4fcg_A 149 -LNRLRELSIRACPELT--------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI-----ANLQNLKSLKI 213 (328)
T ss_dssp -CTTCCEEEEEEETTCC--------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGG-----GGCTTCCEEEE
T ss_pred -CcCCCEEECCCCCCcc--------ccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhh-----cCCCCCCEEEc
Confidence 4778888888776655 233333 337788888888887763 44433 34677888888
Q ss_pred CCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHH
Q 012930 317 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 396 (453)
Q Consensus 317 s~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l 396 (453)
++|.+++ ++..++ .+++|++|++++|++.. .+|..+..+++|+.|++++|.+.+. +|
T Consensus 214 ~~N~l~~---------l~~~l~---~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~-----~p-- 270 (328)
T 4fcg_A 214 RNSPLSA---------LGPAIH---HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT-----LP-- 270 (328)
T ss_dssp ESSCCCC---------CCGGGG---GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB-----CC--
T ss_pred cCCCCCc---------Cchhhc---cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh-----cc--
Confidence 8887775 334455 56778888888877665 3566677777888888887766543 44
Q ss_pred HhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 397 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 397 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
..+..+++|++|+|++|++... ++..+..+ ++|+.+++..|.+.
T Consensus 271 -~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L-~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 -LDIHRLTQLEKLDLRGCVNLSR----LPSLIAQL-PANCIILVPPHLQA 314 (328)
T ss_dssp -TTGGGCTTCCEEECTTCTTCCC----CCGGGGGS-CTTCEEECCGGGSC
T ss_pred -hhhhcCCCCCEEeCCCCCchhh----ccHHHhhc-cCceEEeCCHHHHH
Confidence 4466667888888888776654 66677774 44778877766543
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=4.6e-21 Score=180.81 Aligned_cols=207 Identities=20% Similarity=0.177 Sum_probs=118.1
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC-CCCCCch
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS 266 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-l~~~~~~ 266 (453)
++|++|++++|.+...... .+..+++|++|++++|.++...+..+.. +++|++|++++|. +..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~l~~---- 95 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS---- 95 (285)
T ss_dssp TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred CCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCC--------ccCCCEEeCCCCCCccc----
Confidence 4666677766665433221 1345666777777777666544444432 4666777777665 544
Q ss_pred hhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcc
Q 012930 267 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 346 (453)
Q Consensus 267 ~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L 346 (453)
..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+. .+++|
T Consensus 96 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L 155 (285)
T 1ozn_A 96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDNALQALPD--------DTFR---DLGNL 155 (285)
T ss_dssp ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTC
T ss_pred ----cCHHHhcCCcCCCEEECCCCcCCEECHhHh-----hCCcCCCEEECCCCcccccCH--------hHhc---cCCCc
Confidence 123445566677777777776665333222 335667777777776664322 2222 45667
Q ss_pred cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930 347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 426 (453)
Q Consensus 347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 426 (453)
++|++++|+++. ..+..+..+++|+.|++++|.+++. .| ..+..+++|++|++++|.++.. .+.
T Consensus 156 ~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~l~~n~l~~~----~~~ 219 (285)
T 1ozn_A 156 THLFLHGNRISS----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PTE 219 (285)
T ss_dssp CEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CHH
T ss_pred cEEECCCCcccc----cCHHHhcCccccCEEECCCCccccc-----CH---hHccCcccccEeeCCCCcCCcC----CHH
Confidence 777777776665 1122455666777777777766652 22 3455566677777777766653 223
Q ss_pred HHhcCCCCCcEEECcCCCCCc
Q 012930 427 TLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 427 ~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
.+.. .++|++|++++|++..
T Consensus 220 ~~~~-l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 220 ALAP-LRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHTT-CTTCCEEECCSSCEEC
T ss_pred Hccc-CcccCEEeccCCCccC
Confidence 3444 2447777777776543
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=6.4e-21 Score=193.17 Aligned_cols=230 Identities=19% Similarity=0.103 Sum_probs=123.8
Q ss_pred ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.|+++++.+..++.. +.++++|++|+|++|.+...... .+..+++|++|++++|.++...+..+..
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 150 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSG------ 150 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTT------
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccC------
Confidence 355555555555444433 23445555666655554332111 1344555666666655555443333322
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+.+|++|++++|.++. .....+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|...+.
T Consensus 151 --l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 151 --LNSLEQLTLEKCNLTS--------IPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp --CTTCCEEEEESCCCSS--------CCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCE
T ss_pred --CCCCCEEECCCCcCcc--------cChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccc
Confidence 3556666666665554 22334455566666666666555422211 13345566666666554433
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ .... ...+|++|++++|+++.. -+..+..+++|+.|+|++|.|++ ++. ..+..++
T Consensus 216 ~~--------~~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~--~~~~~l~ 272 (477)
T 2id5_A 216 MT--------PNCL---YGLNLTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPIST------IEG--SMLHELL 272 (477)
T ss_dssp EC--------TTTT---TTCCCSEEEEESSCCCSC----CHHHHTTCTTCCEEECCSSCCCE------ECT--TSCTTCT
T ss_pred cC--------cccc---cCccccEEECcCCccccc----CHHHhcCccccCeeECCCCcCCc------cCh--hhccccc
Confidence 22 2111 223677777777777751 22456777788888888887775 221 3456667
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+|++|+|++|+++.. .+..+.. .++|+.|+|++|.|++-
T Consensus 273 ~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 273 RLQEIQLVGGQLAVV----EPYAFRG-LNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp TCCEEECCSSCCSEE----CTTTBTT-CTTCCEEECCSSCCSCC
T ss_pred cCCEEECCCCccceE----CHHHhcC-cccCCEEECCCCcCcee
Confidence 777777777776664 2334444 24477777777776653
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.4e-22 Score=191.71 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=122.4
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
.+++.|+|++|.+...... +..+++|++|+|++|.++ ..+..+.. +.+|++|++++|.++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~-~lp~~~~~--------l~~L~~L~Ls~n~l~~----- 141 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQQ--------FAGLETLTLARNPLRA----- 141 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCC-CCCSCGGG--------GTTCSEEEEESCCCCC-----
T ss_pred cceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCcc-chhHHHhc--------cCCCCEEECCCCcccc-----
Confidence 5667777777665422111 234566777777777666 33333322 4667777777776664
Q ss_pred hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHH----HHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCC
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS----SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 343 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~----~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~ 343 (453)
++..+..+++|++|++++|++.+..+..+.. .-+..+++|++|++++|.++. +|..++ .+
T Consensus 142 ----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------lp~~l~---~l 205 (328)
T 4fcg_A 142 ----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------LPASIA---NL 205 (328)
T ss_dssp ----CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------CCGGGG---GC
T ss_pred ----CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------chHhhc---CC
Confidence 3445666677777777776555444432210 000125667777777776663 334444 45
Q ss_pred CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423 (453)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 423 (453)
++|++|++++|.++. ++..+..+++|+.|++++|.+.+. +| ..+..+++|++|++++|.+...
T Consensus 206 ~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~-----~p---~~~~~l~~L~~L~L~~n~~~~~---- 268 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN-----YP---PIFGGRAPLKRLILKDCSNLLT---- 268 (328)
T ss_dssp TTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB-----CC---CCTTCCCCCCEEECTTCTTCCB----
T ss_pred CCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh-----hH---HHhcCCCCCCEEECCCCCchhh----
Confidence 667777777777664 455566677777777777665543 34 4456666777777777665543
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 424 LLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
++..+..+ ++|++|+|++|++.+.+|.
T Consensus 269 ~p~~~~~l-~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 269 LPLDIHRL-TQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCTTGGGC-TTCCEEECTTCTTCCCCCG
T ss_pred cchhhhcC-CCCCEEeCCCCCchhhccH
Confidence 44455553 4477777777766666553
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.2e-21 Score=184.97 Aligned_cols=234 Identities=19% Similarity=0.196 Sum_probs=174.5
Q ss_pred cccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++....++.. +..+++|++|++++|.+..... .......+++|++|++++|.++... ..+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~------ 98 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMS-SNFL------ 98 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE--EEHHHHSCSCCCEEECCSCSEEEEE-EEEE------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC--cccccccccccCEEECCCCccccCh-hhcC------
Confidence 3688888988888777665 4677999999999998653210 0011236789999999999887421 1111
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
.+++|++|++++|.++.... ...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus 99 --~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 99 --GLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp --TCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTT-----TTCTTCCEEECTTCEEGG
T ss_pred --CCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccchhhc-----ccCcCCCEEECCCCcccc
Confidence 15889999999999877221 1457788999999999999876544333 457899999999999875
Q ss_pred -cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930 324 -WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 402 (453)
Q Consensus 324 -~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~ 402 (453)
..+ ..+ ..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++ ++. ..+..
T Consensus 165 ~~~~--------~~~---~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~ 221 (306)
T 2z66_A 165 NFLP--------DIF---TELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFS------LDT--FPYKC 221 (306)
T ss_dssp GEEC--------SCC---TTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCSB------CCS--GGGTT
T ss_pred ccch--------hHH---hhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCccCc------cCh--hhccC
Confidence 222 333 367899999999999997 346678889999999999999987 332 34677
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 403 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 403 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+++|++|++++|+++.. .+..+..+.++|++|++++|.++..
T Consensus 222 l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCCCeecc
Confidence 89999999999999875 3445555445799999999998654
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.1e-19 Score=172.23 Aligned_cols=211 Identities=20% Similarity=0.245 Sum_probs=164.6
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
.+++.|++++|.+...... ...+++|++|++++|.+++.....+... +++|++|++++|.+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~~L~~L~L~~~~l~~----- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD----- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH-----
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhh-------CCCCCEEeCcCcccCH-----
Confidence 7899999999986544332 2367899999999999987744444332 6899999999999887
Q ss_pred hHHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCC-CCCCcccccCcCchHHhhcCCCCCC-
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQ- 344 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~~~- 344 (453)
..+..+..+++|++|++++| .+++.....+. ..+++|++|++++| .+++.. ++..+. .++
T Consensus 133 ---~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~-------~~~~~~---~l~~ 195 (336)
T 2ast_B 133 ---PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNLSWCFDFTEKH-------VQVAVA---HVSE 195 (336)
T ss_dssp ---HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEEECCCCTTCCHHH-------HHHHHH---HSCT
T ss_pred ---HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEEcCCCCCCcChHH-------HHHHHH---hccc
Confidence 67888889999999999999 78876554433 33799999999999 888531 234455 567
Q ss_pred cccEEEecCC--CCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCCCCccEEEccCC-CCChhh
Q 012930 345 SLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRG 420 (453)
Q Consensus 345 ~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~~ 420 (453)
+|++|++++| .+++. .++..+..+++|+.|++++|. +++.+.. .+..+++|++|++++| .+++.+
T Consensus 196 ~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp TCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGG
T ss_pred CCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHH
Confidence 9999999999 67764 467778889999999999999 7876433 3455699999999999 577764
Q ss_pred HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
. ..+.. .++|++|++++| +++++
T Consensus 265 ~----~~l~~-~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 265 L----LELGE-IPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp G----GGGGG-CTTCCEEECTTS-SCTTC
T ss_pred H----HHHhc-CCCCCEEeccCc-cCHHH
Confidence 3 34555 456999999999 87754
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=4.2e-19 Score=172.13 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=114.9
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++....++. +..+++|+.|++++|........ +..+++|++|++++|.+..... +..
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~--~~~------- 175 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP--IAN------- 175 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GGG-------
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchh--hcc-------
Confidence 35555555555444333 44455555555555532111111 3355556666666665554332 111
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|++|++++|.+.. +.. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 176 -l~~L~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~- 236 (347)
T 4fmz_A 176 -LTDLYSLSLNYNQIED---------ISP-LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL- 236 (347)
T ss_dssp -CTTCSEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred -CCCCCEEEccCCcccc---------ccc-ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-
Confidence 3556666666666554 111 4455566666666665554222 12356666666666666541
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+. +. .+++|++|++++|.+++ + ..+..+++|+.|++++|.+++ ++ .+..+++
T Consensus 237 --------~~-~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------~~----~~~~l~~ 288 (347)
T 4fmz_A 237 --------SP-LA---NLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------IS----VLNNLSQ 288 (347)
T ss_dssp --------GG-GT---TCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------CG----GGGGCTT
T ss_pred --------cc-hh---cCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------Ch----hhcCCCC
Confidence 11 22 45666666666666665 2 235566666666666666665 22 2344566
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|++|++++|+++.. .+..+..+ ++|++|++++|.+++..+
T Consensus 289 L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 289 LNSLFLNNNQLGNE----DMEVIGGL-TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSEEECCSSCCCGG----GHHHHHTC-TTCSEEECCSSSCCCCGG
T ss_pred CCEEECcCCcCCCc----ChhHhhcc-ccCCEEEccCCccccccC
Confidence 66666666666654 23444442 346666666666665443
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=7.9e-21 Score=187.43 Aligned_cols=233 Identities=18% Similarity=0.082 Sum_probs=147.6
Q ss_pred ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....++. .+..+++|++|++++|.+...... .+..+++|++|++++|.++......+..
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~------ 139 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN------ 139 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcC------
Confidence 67888888887766543 566778899999998886544322 2467788999999999887543333222
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.+.. ..+..+..+++|++|++++|.+++... ..+++|+.|++++|.+++.
T Consensus 140 --l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 140 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp --CTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred --CCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc--------ccccccceeeccccccccc
Confidence 5788999999998876 334557788899999999998876422 1234555544444443321
Q ss_pred cccc----------------------------CcCch--HHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930 325 LSKY----------------------------DRSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 374 (453)
Q Consensus 325 ~~~~----------------------------~~~~l--~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 374 (453)
.... ....+ ...+. .+++|++|++++|.+++ ..+..+..+++|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 274 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL 274 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc---CCCCccEEECCCCcCCC----cChhHccccccC
Confidence 0000 00000 01222 45677777777777776 235566677777
Q ss_pred cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+.|++++|.+++ +| .....+++|++|++++|+++.. +..+..+ ++|++|++++|.|++.
T Consensus 275 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l-~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 275 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLHV-----ERNQPQF-DRLENLYLDHNSIVTL 333 (390)
T ss_dssp CEEECCSSCCCE------EE---CSSSCCTTCCEEECCSSCCCCC-----GGGHHHH-TTCSEEECCSSCCCCC
T ss_pred CEEECCCCcCcc------cC---cccCCCCCCCEEECCCCcceec-----Ccccccc-CcCCEEECCCCcccee
Confidence 777777777765 33 3345567788888888877652 3333332 3377778777777653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.4e-18 Score=180.62 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=68.6
Q ss_pred ccceeccccccchH-HHhhhh-cCCCccEEEecccc-ChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhc
Q 012930 166 YARCLRLQNALCVE-ETCQLL-RESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 242 (453)
Q Consensus 166 ~l~~l~L~~~~~~~-~~~~l~-~~~~L~~L~Ls~~~-~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~ 242 (453)
.++.++++++.... .+..+. .+++|++|+|++|. +... ....+..++++|++|+|++|.+++.++..+.....
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~- 181 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD- 181 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT-
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh-
Confidence 46666666655443 223333 56888888888874 3322 12333557788888888888776655444432211
Q ss_pred cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCC
Q 012930 243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 290 (453)
Q Consensus 243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n 290 (453)
.+++|++|++++|. ..... ..+...+..+++|++|++++|
T Consensus 182 ---~~~~L~~L~l~~~~-~~~~~----~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 ---TYTSLVSLNISCLA-SEVSF----SALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp ---TCCCCCEEECTTCC-SCCCH----HHHHHHHHHCTTCCEEECCTT
T ss_pred ---cCCcCcEEEecccC-CcCCH----HHHHHHHHhCCCCcEEecCCC
Confidence 15678888888876 22111 145555566888888888887
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=6.2e-21 Score=191.32 Aligned_cols=228 Identities=17% Similarity=0.105 Sum_probs=170.9
Q ss_pred cccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++.+..++ ..+.++++|++|+|++|.+...... .+.++++|++|+|++|.++......+..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVY----- 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCS-----
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhc-----
Confidence 35788888888777654 4566789999999999986544322 2567899999999999888654444332
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
+.+|++|++++|.+.. .....+..+++|++|+|++|+.....+... +..+++|++|++++|.+++
T Consensus 135 ---l~~L~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 135 ---LSKLKELWLRNNPIES--------IPSYAFNRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp ---CSSCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCEECTTT----TTTCSSCCEEECTTSCCSS
T ss_pred ---cccCceeeCCCCcccc--------cCHHHhhhCcccCEeCCCCCCCcceeCcch----hhcccccCeecCCCCcCcc
Confidence 5889999999999886 334467788999999999864333233221 3457899999999999885
Q ss_pred cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
+ ..+..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.|++. .+ .++..+
T Consensus 200 ---------~----~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~l 254 (440)
T 3zyj_A 200 ---------I----PNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVI-----ER---NAFDNL 254 (440)
T ss_dssp ---------C----CCCTTCSSCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEE-----CT---TSSTTC
T ss_pred ---------c----cccCCCcccCEEECCCCccCc----cChhhhccCccCCEEECCCCceeEE-----Ch---hhhcCC
Confidence 2 223467899999999999987 3466788999999999999999872 22 557788
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
++|++|+|++|+|+.. ....+.. .++|+.|+|++|.+.
T Consensus 255 ~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLL----PHDLFTP-LHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCC----CTTTTSS-CTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCcc----ChhHhcc-ccCCCEEEcCCCCcc
Confidence 9999999999999874 2333455 356999999999863
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=2.5e-20 Score=179.57 Aligned_cols=224 Identities=19% Similarity=0.155 Sum_probs=137.3
Q ss_pred ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....++. .+..+++|++|++++|.+...... .+..+++|++|++++|.++.... .+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~l~~-~~-------- 119 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLKELPE-KM-------- 119 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCSBCCS-SC--------
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCCCcCCccCh-hh--------
Confidence 46666777666655444 455667777777777775433221 14566777777777777663211 11
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh--HHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD--FGRMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
..+|++|++++|.++. ..+..+.++++|++|++++|.+... .+.. +..+++|++|++++|.++
T Consensus 120 --~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 120 --PKTLQELRVHENEITK--------VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----FQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp --CTTCCEEECCSSCCCB--------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----GGGCTTCCEEECCSSCCC
T ss_pred --cccccEEECCCCcccc--------cCHhHhcCCccccEEECCCCcCCccCcChhh-----ccCCCCcCEEECCCCccc
Confidence 2567777777777765 3344566777777777777776531 1111 234577777777777776
Q ss_pred CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 402 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~ 402 (453)
+ +|..+ .++|++|++++|.+++ ..+..+..+++|+.|++++|.+++. +. ..+..
T Consensus 185 ~---------l~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~------~~--~~~~~ 238 (330)
T 1xku_A 185 T---------IPQGL-----PPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAV------DN--GSLAN 238 (330)
T ss_dssp S---------CCSSC-----CTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEE------CT--TTGGG
T ss_pred c---------CCccc-----cccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCcee------Ch--hhccC
Confidence 4 11211 1567777777777776 2345566777777777777777652 21 23455
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 403 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 403 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+++|++|++++|+++. ++..+.. .++|++|++++|.|++-.
T Consensus 239 l~~L~~L~L~~N~l~~-----lp~~l~~-l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 239 TPHLRELHLNNNKLVK-----VPGGLAD-HKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp STTCCEEECCSSCCSS-----CCTTTTT-CSSCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCcCcc-----CChhhcc-CCCcCEEECCCCcCCccC
Confidence 5777777777777765 4555555 345777777777776543
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1e-20 Score=190.45 Aligned_cols=228 Identities=18% Similarity=0.096 Sum_probs=173.0
Q ss_pred cccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.|+++++.+..+ +..+.++++|+.|+|++|.+...... .+.++++|++|+|++|.++......+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEY----- 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSS-----
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhcc-----
Confidence 4688899998887765 44567789999999999987654322 2567899999999999988655444432
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
+++|++|++++|.+.. .....+..+++|++|++++|...+..+... +..+++|+.|++++|.+++
T Consensus 146 ---l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 146 ---LSKLRELWLRNNPIES--------IPSYAFNRVPSLMRLDLGELKKLEYISEGA----FEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp ---CTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCEECTTT----TTTCTTCCEEECTTSCCSS
T ss_pred ---cCCCCEEECCCCCcce--------eCHhHHhcCCcccEEeCCCCCCccccChhh----ccCCCCCCEEECCCCcccc
Confidence 5889999999999886 233467789999999999854333233221 3457899999999999985
Q ss_pred cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
. ..+..+++|++|+|++|.+++ ..+..+..+++|+.|++++|.++.. .+ ..+..+
T Consensus 211 ~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~l 265 (452)
T 3zyi_A 211 M-------------PNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQVSLI-----ER---NAFDGL 265 (452)
T ss_dssp C-------------CCCTTCTTCCEEECTTSCCSE----ECGGGGTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred c-------------ccccccccccEEECcCCcCcc----cCcccccCccCCCEEEeCCCcCceE-----CH---HHhcCC
Confidence 2 223467899999999999987 3467888999999999999999872 23 557788
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
++|++|+|++|+|+.. ....+.. .++|+.|+|++|.+.
T Consensus 266 ~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSL----PHDLFTP-LRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCC----CTTSSTT-CTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCcc----ChHHhcc-ccCCCEEEccCCCcC
Confidence 9999999999999874 2233444 356999999999864
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=5.2e-21 Score=182.35 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=173.2
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhH--HHHHHHHhhccc
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR 244 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~L~~~~ 244 (453)
.+.+++++.....++..+. ++|++|++++|.+...... .+..+++|++|+|++|.++..+ +..+..
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------ 76 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFG------ 76 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCEEEEEEHHHHS------
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh----HhhccccCCEEECCCCccCcccCccccccc------
Confidence 3455566665555554332 6899999999997643222 2568899999999999998543 333332
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHH-HHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
+.+|++|++++|.+.. ++..+..+++|++|++++|.+.+... .. +..+++|++|++++|.+++
T Consensus 77 --~~~L~~L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 77 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----FLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTTT-----TTTCTTCCEEECTTSCCEE
T ss_pred --ccccCEEECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccchh-----hhhccCCCEEECCCCcCCc
Confidence 5889999999999875 45567889999999999998876332 12 2457899999999999886
Q ss_pred cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
..+ ..+. .+++|++|++++|.+++. .++..+..+++|+.|++++|.+++. .| ..+..+
T Consensus 141 ~~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l 198 (306)
T 2z66_A 141 AFN--------GIFN---GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSL 198 (306)
T ss_dssp CST--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred cch--------hhcc---cCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCc-----CH---HHhcCC
Confidence 433 3344 678999999999998752 2466788899999999999999872 23 557788
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
++|++|++++|.++... ...+.. .++|++|++++|.|++..+.
T Consensus 199 ~~L~~L~L~~N~l~~~~----~~~~~~-l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLD----TFPYKC-LNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp TTCCEEECTTSCCSBCC----SGGGTT-CTTCCEEECTTSCCCBCSSS
T ss_pred CCCCEEECCCCccCccC----hhhccC-cccCCEeECCCCCCcccCHH
Confidence 99999999999998742 223455 35699999999999886653
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=7.6e-19 Score=170.27 Aligned_cols=229 Identities=17% Similarity=0.214 Sum_probs=177.3
Q ss_pred cCCceeeeehhhhc--------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEE
Q 012930 151 CDYSKLSYHCQQFG--------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 222 (453)
Q Consensus 151 ~~l~~l~l~~~~~~--------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~ 222 (453)
.+++.+.++.+.+. ..++.+++.++........+..+++|++|++++|.+..... +..+++|++|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEE
Confidence 67777777665221 15788999988554445557888999999999998654432 56889999999
Q ss_pred cCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHH
Q 012930 223 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 302 (453)
Q Consensus 223 L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 302 (453)
+++|.+.+... +.. +.+|+.|++++|.++.. .+ +..+++|++|++++|.+.+..+
T Consensus 184 l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~--------~~--~~~~~~L~~L~l~~n~l~~~~~----- 238 (347)
T 4fmz_A 184 LNYNQIEDISP--LAS--------LTSLHYFTAYVNQITDI--------TP--VANMTRLNSLKIGNNKITDLSP----- 238 (347)
T ss_dssp CTTSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC--------GG--GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred ccCCccccccc--ccC--------CCccceeecccCCCCCC--------ch--hhcCCcCCEEEccCCccCCCcc-----
Confidence 99999886543 221 58899999999999872 11 6789999999999999987433
Q ss_pred HHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930 303 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382 (453)
Q Consensus 303 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 382 (453)
+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++ + ..+..+++|+.|++++|
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~----------~~~~---~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI----------NAVK---DLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC----------GGGT---TCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSS
T ss_pred --hhcCCCCCEEECCCCccCCC----------hhHh---cCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCC
Confidence 24579999999999999862 2334 67899999999999997 3 35788999999999999
Q ss_pred CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 383 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
.+++.+ + ..+..+++|++|++++|+++.. .. +..+ +.|++|++++|.|+
T Consensus 298 ~l~~~~-----~---~~l~~l~~L~~L~L~~n~l~~~-----~~-~~~l-~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNED-----M---EVIGGLTNLTTLFLSQNHITDI-----RP-LASL-SKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGG-----H---HHHHTCTTCSEEECCSSSCCCC-----GG-GGGC-TTCSEESSSCC---
T ss_pred cCCCcC-----h---hHhhccccCCEEEccCCccccc-----cC-hhhh-hccceeehhhhccc
Confidence 998753 2 3356679999999999999885 22 5563 55999999999986
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=2.2e-20 Score=194.56 Aligned_cols=233 Identities=18% Similarity=0.087 Sum_probs=155.2
Q ss_pred ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.|+++++.+..++. .+..+++|+.|+|++|.+...... .+.++++|++|+|++|.++...+..+..
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~------ 145 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN------ 145 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhcc------
Confidence 68888888887776554 667778999999999986554332 2567889999999999888544433332
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.++. ..+..+..+++|++|+|++|.+.+..+. .+++|+.|++++|.+++.
T Consensus 146 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 146 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp --CTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred --CCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcChh--------hhhhhhhhhcccCccccc
Confidence 5889999999998887 3445677889999999999988764221 234555544444443321
Q ss_pred cccc----------------------------CcCch--HHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc
Q 012930 325 LSKY----------------------------DRSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 374 (453)
Q Consensus 325 ~~~~----------------------------~~~~l--~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 374 (453)
.... ....+ +..+. .+++|++|+|++|.+++ ..|..+..+++|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L 280 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL 280 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc---cCCCCCEEECCCCccCC----CCHHHhcCccCC
Confidence 0000 00000 01223 56778888888888876 345667778888
Q ss_pred cEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 375 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 375 ~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+.|+|++|.++. +| .....+++|+.|+|++|.++. ++..+..+ ++|++|+|++|.|++.
T Consensus 281 ~~L~Ls~N~l~~------l~---~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l-~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 281 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQF-DRLENLYLDHNSIVTL 339 (597)
T ss_dssp CEEECTTSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHH-TTCSEEECCSSCCCCC
T ss_pred CEEECCCCCCCC------CC---cccccCCCCcEEECCCCCCCc-----cCcccccC-CCCCEEECCCCCCCCc
Confidence 888888888876 44 335566788888888888875 33334442 3488888888887653
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=8.5e-21 Score=187.24 Aligned_cols=245 Identities=21% Similarity=0.206 Sum_probs=175.7
Q ss_pred cCCceeeeehhh--------hcc--ccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930 151 CDYSKLSYHCQQ--------FGH--YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA 219 (453)
Q Consensus 151 ~~l~~l~l~~~~--------~~~--~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~ 219 (453)
.+++.+.++.+. +.. .++.|+++++....++. .+..+++|++|++++|.+...... .+..+++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCc
Confidence 567777766542 222 68999999998877654 457789999999999997643322 256789999
Q ss_pred EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH---------hh--------------
Q 012930 220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS---------FL-------------- 276 (453)
Q Consensus 220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~---------~l-------------- 276 (453)
+|++++|.++...+..+.. +++|++|++++|.++......++. +.. .+
T Consensus 145 ~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQA--------TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp EEECCSSCCCBCCTTTTSS--------CTTCCEEECCSSCCSBCCGGGCTT-CSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred EEECCCCccCccChhhccC--------CCCCCEEECCCCcCCccccccccc-cceeecccccccccCCCCcceEEECCCC
Confidence 9999999998765554433 589999999999998754331110 000 00
Q ss_pred -------cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930 277 -------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 349 (453)
Q Consensus 277 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L 349 (453)
...++|+.|++++|.+.+. .. +..+++|++|++++|.+++..+ ..+. .+++|++|
T Consensus 216 ~l~~~~~~~~~~L~~L~l~~n~l~~~--~~-----l~~l~~L~~L~Ls~n~l~~~~~--------~~~~---~l~~L~~L 277 (390)
T 3o6n_A 216 SINVVRGPVNVELTILKLQHNNLTDT--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERL 277 (390)
T ss_dssp CCCEEECCCCSSCCEEECCSSCCCCC--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEE
T ss_pred eeeeccccccccccEEECCCCCCccc--HH-----HcCCCCccEEECCCCcCCCcCh--------hHcc---ccccCCEE
Confidence 0113566666666666652 11 2446889999999998886544 4555 67899999
Q ss_pred EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHh
Q 012930 350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 429 (453)
Q Consensus 350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 429 (453)
++++|+++. ++..+..+++|+.|++++|+++. +| ..+..+++|++|++++|+|+... +.
T Consensus 278 ~L~~n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~N~i~~~~-------~~ 336 (390)
T 3o6n_A 278 YISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LS 336 (390)
T ss_dssp ECCSSCCCE-----EECSSSCCTTCCEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CC
T ss_pred ECCCCcCcc-----cCcccCCCCCCCEEECCCCccee------cC---ccccccCcCCEEECCCCccceeC-------ch
Confidence 999999986 55556778999999999999986 44 22344589999999999998842 44
Q ss_pred cCCCCCcEEECcCCCCCcc
Q 012930 430 TLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 430 ~~~~~L~~L~Ls~N~l~~~ 448 (453)
. .++|+.|++++|+++..
T Consensus 337 ~-~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 337 T-HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp T-TCCCSEEECCSSCEEHH
T ss_pred h-hccCCEEEcCCCCccch
Confidence 4 35699999999998754
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.4e-21 Score=186.92 Aligned_cols=209 Identities=17% Similarity=0.226 Sum_probs=168.4
Q ss_pred CCccEEEeccccChH--HHHHHHHHHHhcCCCccEEEcCC-CCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930 188 SKLQSLVLRWIRFEE--HVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 264 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~--~~~~~~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~ 264 (453)
.++++|+|++|.+.. .... .+..+++|++|++++ |.+.+..+..+.. +++|++|++++|.++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~----~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~-- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAK--------LTQLHYLYITHTNVSG-- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGG--------CTTCSEEEEEEECCEE--
T ss_pred ceEEEEECCCCCccCCcccCh----hHhCCCCCCeeeCCCCCcccccCChhHhc--------CCCCCEEECcCCeeCC--
Confidence 579999999999764 3222 256889999999995 8887766666544 6899999999999986
Q ss_pred chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930 265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 344 (453)
Q Consensus 265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~ 344 (453)
.++..+..+++|++|+|++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+. .+.
T Consensus 116 ------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p--------~~l~---~l~ 173 (313)
T 1ogq_A 116 ------AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIP--------DSYG---SFS 173 (313)
T ss_dssp ------ECCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECC--------GGGG---CCC
T ss_pred ------cCCHHHhCCCCCCEEeCCCCccCCcCChHH-----hcCCCCCeEECcCCcccCcCC--------HHHh---hhh
Confidence 466778899999999999999887666554 447999999999999986554 6666 455
Q ss_pred -cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930 345 -SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423 (453)
Q Consensus 345 -~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 423 (453)
+|++|++++|+++. .+|..+..++ |+.|++++|.+++. .| ..+..+++|++|+|++|.++..
T Consensus 174 ~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~~~---- 236 (313)
T 1ogq_A 174 KLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGD-----AS---VLFGSDKNTQKIHLAKNSLAFD---- 236 (313)
T ss_dssp TTCCEEECCSSEEEE----ECCGGGGGCC-CSEEECCSSEEEEC-----CG---GGCCTTSCCSEEECCSSEECCB----
T ss_pred hcCcEEECcCCeeec----cCChHHhCCc-ccEEECcCCcccCc-----CC---HHHhcCCCCCEEECCCCceeee----
Confidence 89999999999986 3677777777 99999999999763 44 5678889999999999999863
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 424 LLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
...+.. .++|++|++++|.|++.+|.
T Consensus 237 -~~~~~~-l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 237 -LGKVGL-SKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp -GGGCCC-CTTCCEEECCSSCCEECCCG
T ss_pred -cCcccc-cCCCCEEECcCCcccCcCCh
Confidence 222455 46699999999999877664
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.5e-20 Score=197.12 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred ccceeccccccchH------------------HHhhhh--cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC
Q 012930 166 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 225 (453)
Q Consensus 166 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 225 (453)
.++.|+++++.+.. ++..+. ++++|++|+|++|.+....+ ..+.++++|++|++++
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLINVAC 282 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC----TTTTTCSSCCEEECTT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh----HHHhcCCCCCEEECcC
Confidence 57777787777766 677777 78888888888887544333 2245778888888888
Q ss_pred CC-CCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930 226 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF 301 (453)
Q Consensus 226 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~ 301 (453)
|. +++ ..+..+...-... .+++|++|++++|.++. ++. .+..+++|++|++++|.+.+..+ .+
T Consensus 283 n~~l~~~~lp~~~~~L~~~~--~l~~L~~L~L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~- 349 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAP--VGEKIQIIYIGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-AF- 349 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSG--GGGTCCEEECCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-CC-
T ss_pred CCCCccccchHHHHhhhccc--cCCCCCEEECCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchh-hh-
Confidence 87 777 6666665420000 02678888888887774 444 56677788888888887775454 22
Q ss_pred HHHhhCCCCCCEEEcCCCCCC
Q 012930 302 SSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 302 ~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
..+++|++|++++|.++
T Consensus 350 ----~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 350 ----GSEIKLASLNLAYNQIT 366 (636)
T ss_dssp ----EEEEEESEEECCSSEEE
T ss_pred ----CCCCCCCEEECCCCccc
Confidence 33456666666666655
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=1.3e-20 Score=196.54 Aligned_cols=244 Identities=20% Similarity=0.133 Sum_probs=115.9
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHH-HHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~L~~~~ 244 (453)
.++.++++++....++..+..+++|++|++++|.+...... .+..+++|++|++++|.+....+. .+..
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------ 348 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLEN------ 348 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSEEECCSCSSCCBCCSSTTTT------
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh----hhhccCcCCEEECCCCCcccccchhhhhc------
Confidence 45556666655555555555556666666666654432211 133455555555555544321111 1111
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.++... ..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++.
T Consensus 349 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 349 --LENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp --CTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECC
T ss_pred --cCcCCEEECCCCcccccc------CcchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCc
Confidence 344555555555544311 002233444455555555554443222221 2234444444444444332
Q ss_pred ccccCc-----------------CchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930 325 LSKYDR-----------------SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387 (453)
Q Consensus 325 ~~~~~~-----------------~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 387 (453)
.+.... ...+..+. .+++|++|++++|++++..+ ..+..+..+++|+.|++++|.+++.
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFD---GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTT---TCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHh---CCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCccCcc
Confidence 110000 00012222 45566666666666654110 0112355566666666666666652
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
.| ..+..+++|++|+|++|+++.. .+..+..+ +.| +|++++|.|++..+
T Consensus 492 -----~~---~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l-~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 492 -----DQ---HAFTSLKMMNHVDLSHNRLTSS----SIEALSHL-KGI-YLNLASNHISIILP 540 (606)
T ss_dssp -----CT---TTTTTCTTCCEEECCSSCCCGG----GGGGGTTC-CSC-EEECCSSCCCCCCG
T ss_pred -----Ch---hhhccccCCCEEECCCCccCcC----ChhHhCcc-ccc-EEECcCCcccccCH
Confidence 22 4456667777777777777664 34455553 446 77777777765443
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=6.1e-21 Score=184.10 Aligned_cols=229 Identities=17% Similarity=0.137 Sum_probs=127.0
Q ss_pred ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....++ ..+..+++|++|++++|.+...... .+..+++|++|++++|.++..... +
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~-~-------- 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLVEIPPN-L-------- 121 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTCCEEECCSSCCCSCCSS-C--------
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCCCEEECCCCcCCccCcc-c--------
Confidence 5666777766665543 3455667777777777765433221 145667777777777766632111 0
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh--HHHHHHHHHhhCC--------------
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD--FGRMVFSSLLEAS-------------- 308 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~L~~~~-------------- 308 (453)
..+|++|++++|.+.. ..+..+..+++|++|++++|.+... .+.. +..+
T Consensus 122 --~~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 122 --PSSLVELRIHDNRIRK--------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-----FDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp --CTTCCEEECCSSCCCC--------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-----SCSCCCSCCBCCSSBCSS
T ss_pred --cccCCEEECCCCccCc--------cCHhHhCCCccCCEEECCCCccccCCCCccc-----ccCCccCEEECcCCCCCc
Confidence 2457777777777665 2223455667777777777766431 1111 1112
Q ss_pred ------CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCC
Q 012930 309 ------SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 382 (453)
Q Consensus 309 ------~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 382 (453)
++|++|++++|.+++..+ .. +..+++|++|++++|++++ ..+..+..+++|+.|++++|
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~--------~~---l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIEL--------ED---LLRYSKLYRLGLGHNQIRM----IENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCT--------TS---STTCTTCSCCBCCSSCCCC----CCTTGGGGCTTCCEEECCSS
T ss_pred cCccccCCCCEEECCCCcCCccCH--------HH---hcCCCCCCEEECCCCcCCc----CChhHhhCCCCCCEEECCCC
Confidence 244444444444443211 22 2255677777777777765 22335666777777777777
Q ss_pred CCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHH-hcCCCCCcEEECcCCCCC
Q 012930 383 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLG 446 (453)
Q Consensus 383 ~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~ 446 (453)
.++. +| ..+..+++|++|++++|+|+..+...+.... ......|+.|++++|.++
T Consensus 252 ~l~~------lp---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 252 KLSR------VP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCB------CC---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCee------cC---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 7764 44 3455667777777777777664322111100 000234677777777765
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.5e-18 Score=176.14 Aligned_cols=242 Identities=16% Similarity=0.111 Sum_probs=178.3
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~ 246 (453)
++.+.+.++....++..+..+++|++|+|++|.+.... ...+...+++|++|+++ +.+++.++..+...
T Consensus 272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~------- 340 (592)
T 3ogk_B 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY------- 340 (592)
T ss_dssp CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH-------
T ss_pred ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHHHh-------
Confidence 33444444444445666667789999999999854332 23346789999999999 67777777777665
Q ss_pred CcceeEEEccC-----------CCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEE
Q 012930 247 IHKIENLSIDI-----------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD 315 (453)
Q Consensus 247 ~~~L~~L~L~~-----------n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~ 315 (453)
+++|++|++++ +.++. ..+......+++|++|+++.|.+++..+..++.. +++|+.|+
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~ 409 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQ-------RGLIALAQGCQELEYMAVYVSDITNESLESIGTY----LKNLCDFR 409 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCH-------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH----CCSCCEEE
T ss_pred CCCCCEEEeecCccccccccccCccCH-------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh----CCCCcEEE
Confidence 68899999993 55554 1344455678999999999999999888877553 68999999
Q ss_pred cC----CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC--CChhhHHHHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930 316 LS----GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN--LCKADARDLGSALVHIPNLEILDISDNTIEDDGI 389 (453)
Q Consensus 316 Ls----~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~ 389 (453)
++ .|.+++... ...++..+. ++++|++|+++.|. +++.++..+ ...+++|+.|++++|.+++.|+
T Consensus 410 l~~~~~~n~l~~~p~---~~~~~~~~~---~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 410 LVLLDREERITDLPL---DNGVRSLLI---GCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp EEECSCCSCCSSCCC---HHHHHHHHH---HCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSCCSSHHHH
T ss_pred EeecCCCccccCchH---HHHHHHHHH---hCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCCCCCHHHH
Confidence 96 566775210 001223344 57899999998764 888654443 3468999999999999999875
Q ss_pred HhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 390 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
..+ +..+++|++|++++|.+++.+...+...+ ++|++|+|++|++++.+.
T Consensus 481 ~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 481 MEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKL----PSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHH-------HTCCTTCCEEEEESCCCBHHHHHHHHHHC----SSCCEEEEESCBCCTTCT
T ss_pred HHH-------HhcCcccCeeeccCCCCcHHHHHHHHHhc----CccCeeECcCCcCCHHHH
Confidence 555 45668999999999999887766655544 349999999999998864
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=3.5e-20 Score=187.74 Aligned_cols=232 Identities=17% Similarity=0.120 Sum_probs=168.1
Q ss_pred ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.|+++++....+ +..+.++++|+.|+|++|.+...... .+.++++|++|+|++|.+....+..+..
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------ 126 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD------ 126 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc------
Confidence 578888888776664 45566778888888888876543222 2456788888888888887655544433
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+.+|++|++++|.+.. ..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.+.+.
T Consensus 127 --l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 127 --LYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp --CTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE
T ss_pred --cccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe
Confidence 5788888888888876 334456778889999999888877443333 4578899999999888763
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ . .+..+++|+.|++++|.+.+ .++..+....+|+.|++++|.++. +|. ..+..++
T Consensus 192 ~~--------~---~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~--~~~~~l~ 248 (477)
T 2id5_A 192 RD--------Y---SFKRLYRLKVLEISHWPYLD----TMTPNCLYGLNLTSLSITHCNLTA------VPY--LAVRHLV 248 (477)
T ss_dssp CT--------T---CSCSCTTCCEEEEECCTTCC----EECTTTTTTCCCSEEEEESSCCCS------CCH--HHHTTCT
T ss_pred Ch--------h---hcccCcccceeeCCCCcccc----ccCcccccCccccEEECcCCcccc------cCH--HHhcCcc
Confidence 32 2 33367889999999986655 355555556689999999999986 432 3467789
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
+|++|+|++|.++... ...+.. ..+|+.|+|++|.|++..+
T Consensus 249 ~L~~L~Ls~n~l~~~~----~~~~~~-l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 249 YLRFLNLSYNPISTIE----GSMLHE-LLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TCCEEECCSSCCCEEC----TTSCTT-CTTCCEEECCSSCCSEECT
T ss_pred ccCeeECCCCcCCccC----hhhccc-cccCCEEECCCCccceECH
Confidence 9999999999988752 334555 3559999999999987654
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=3.3e-21 Score=202.06 Aligned_cols=216 Identities=14% Similarity=0.183 Sum_probs=134.2
Q ss_pred HHhhhhcCCCccEEEeccccChHH-------------HHHHHHHHHh--cCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 180 ETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 180 ~~~~l~~~~~L~~L~Ls~~~~~~~-------------~~~~~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
++..+.++++|++|+|++|.+... ....++..+. ++++|++|+|++|.+.+..+..+..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------ 271 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------ 271 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------
Confidence 555666777777777777776541 0001112233 6677777777777777666655543
Q ss_pred cCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCC------CCccEEEcCCCCCChhHHH--HHHHHHhhCCCCCCEEE
Q 012930 245 KRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSG------RSLCSLKLRHCHLDRDFGR--MVFSSLLEASSSLSILD 315 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~------~~L~~L~L~~n~l~~~~~~--~l~~~L~~~~~~L~~L~ 315 (453)
+++|++|++++|. ++. ..++..+..+ ++|++|++++|.++ ..+. .+ ..+++|++|+
T Consensus 272 --l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l~~L~~L~ 336 (636)
T 4eco_A 272 --LPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKMKKLGMLE 336 (636)
T ss_dssp --CSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTCTTCCEEE
T ss_pred --CCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccCCCCCEEe
Confidence 4677777777776 442 0134444333 67777777777776 3444 33 3467777777
Q ss_pred cCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC-ccEEeCCCCCCChhHHHhHHH
Q 012930 316 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGIRSLIP 394 (453)
Q Consensus 316 Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~i~~~g~~~l~~ 394 (453)
+++|.+++. +| .++ .+++|++|++++|+++. +|..+..+++ |+.|++++|.++. +|
T Consensus 337 L~~N~l~g~--------ip-~~~---~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~------lp 393 (636)
T 4eco_A 337 CLYNQLEGK--------LP-AFG---SEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY------IP 393 (636)
T ss_dssp CCSCCCEEE--------CC-CCE---EEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS------CC
T ss_pred CcCCcCccc--------hh-hhC---CCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc------cc
Confidence 777777642 22 223 55677778888877773 6666777777 8888888888774 55
Q ss_pred HHHhhcCCCC--CccEEEccCCCCChhhHHHHHHHHh-------cCCCCCcEEECcCCCCCc
Q 012930 395 YFVQASERCN--PLVELYLENCELSGRGVSQLLDTLS-------TLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 395 ~l~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~-------~~~~~L~~L~Ls~N~l~~ 447 (453)
..+...+ +|++|++++|.++.. .+..+. . ..+|++|++++|.|++
T Consensus 394 ---~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 394 ---NIFDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFK-GINVSSINLSNNQISK 447 (636)
T ss_dssp ---SCCCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCC-CCCEEEEECCSSCCCS
T ss_pred ---hhhhhcccCccCEEECcCCcCCCc----chhhhccccccccc-CCCCCEEECcCCccCc
Confidence 3344333 788888888887764 333343 3 2358888888888773
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.9e-18 Score=179.65 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=54.3
Q ss_pred ccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930 190 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 269 (453)
Q Consensus 190 L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~ 269 (453)
|++|+|++|... .......+...+++|++|+|++|.+++.+...+...+.. +++|++|++++|.++..+..
T Consensus 140 L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~----~~~L~~L~L~~n~~~~~~~~--- 210 (592)
T 3ogk_B 140 LETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH----NTSLEVLNFYMTEFAKISPK--- 210 (592)
T ss_dssp CCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH----CCCCCEEECTTCCCSSCCHH---
T ss_pred CcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc----CCCccEEEeeccCCCccCHH---
Confidence 666666655411 111122233455666666666665544433222222221 35566666666665532222
Q ss_pred HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC
Q 012930 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 317 (453)
Q Consensus 270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 317 (453)
.+...+.++++|++|++++|.+.+ .+..+ ..+++|++|+++
T Consensus 211 -~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-----~~~~~L~~L~l~ 251 (592)
T 3ogk_B 211 -DLETIARNCRSLVSVKVGDFEILE-LVGFF-----KAAANLEEFCGG 251 (592)
T ss_dssp -HHHHHHHHCTTCCEEECSSCBGGG-GHHHH-----HHCTTCCEEEEC
T ss_pred -HHHHHHhhCCCCcEEeccCccHHH-HHHHH-----hhhhHHHhhccc
Confidence 445555556666666666665544 33222 124555555554
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.5e-19 Score=172.79 Aligned_cols=210 Identities=22% Similarity=0.169 Sum_probs=159.3
Q ss_pred ccceeccccccchH-HHhhh--hcCCCccEEEeccccChHHHHHHHHHH-HhcCCCccEEEcCCCCCChhHHHHHHHHhh
Q 012930 166 YARCLRLQNALCVE-ETCQL--LRESKLQSLVLRWIRFEEHVQALCKLL-IQNSETLASLEFLHCKLSPSFVEGICRSLC 241 (453)
Q Consensus 166 ~l~~l~L~~~~~~~-~~~~l--~~~~~L~~L~Ls~~~~~~~~~~~~~~l-~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~ 241 (453)
.++.|+++++.... .+..+ ..+++|++|+|++|.+... ...+..+ ....++|++|+|++|.++...+..+..
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~--- 171 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV--- 171 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC---
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc---
Confidence 68888888887763 55554 6779999999999997665 2222222 112389999999999998766555543
Q ss_pred ccccCCcceeEEEccCCCCCCCCchhhHHHHHHhh--cCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC
Q 012930 242 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 319 (453)
Q Consensus 242 ~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 319 (453)
+++|++|++++|.+.. . ..++..+ ..+++|++|+|++|.+++. ..+...++..+++|++|++++|
T Consensus 172 -----l~~L~~L~Ls~N~l~~----~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 -----FPALSTLDLSDNPELG----E--RGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp -----CSSCCEEECCSCTTCH----H--HHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECTTS
T ss_pred -----CCCCCEEECCCCCcCc----c--hHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECCCC
Confidence 6899999999999865 0 0244455 7899999999999999841 2234444556799999999999
Q ss_pred CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhh
Q 012930 320 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 399 (453)
Q Consensus 320 ~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~ 399 (453)
.+++..+ ...+..+++|++|+|++|+|+. +|..+. ++|+.|++++|+|++ +| .
T Consensus 239 ~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~------~p---~- 291 (312)
T 1wwl_A 239 SLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR------NP---S- 291 (312)
T ss_dssp CCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS------CC---C-
T ss_pred cCCcccc----------hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC------Ch---h-
Confidence 9997432 1222356899999999999995 666554 899999999999998 54 3
Q ss_pred cCCCCCccEEEccCCCCChh
Q 012930 400 SERCNPLVELYLENCELSGR 419 (453)
Q Consensus 400 l~~~~~L~~L~L~~n~l~~~ 419 (453)
+..+++|++|++++|++++.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTTSCEEEEEECTTCTTTCC
T ss_pred HhhCCCCCEEeccCCCCCCC
Confidence 67779999999999999864
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=6.5e-20 Score=191.30 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=102.5
Q ss_pred ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.|+++++....+ +..+.++++|++|+|++|.+....+. .+.++++|++|++++|.++...+..+..
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~------ 127 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHN------ 127 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTT------
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhcc------
Confidence 688899998877664 45677889999999999986544222 2567899999999999988765554433
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCC--EEEcCCCCCC
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS--ILDLSGNSIG 322 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~--~L~Ls~n~l~ 322 (453)
+.+|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+ ..+++|+ .|++++|.+.
T Consensus 128 --l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 128 --QKTLESLYLGSNHISSIKL--------PKGFPTEKLKVLDFQNNAIHYLSKEDM-----SSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp --CTTCCEEECCSSCCCCCCC--------CTTCCCTTCCEEECCSSCCCEECHHHH-----HTTTTCCSEEEECTTCCCC
T ss_pred --CCcccEEECCCCcccccCc--------ccccCCcccCEEEcccCcccccChhhh-----hhhcccceeEEecCCCccC
Confidence 6889999999999887322 223348999999999999987556554 3468888 8999999887
Q ss_pred Cccc
Q 012930 323 GWLS 326 (453)
Q Consensus 323 ~~~~ 326 (453)
+..+
T Consensus 193 ~~~~ 196 (606)
T 3t6q_A 193 GIEP 196 (606)
T ss_dssp EECT
T ss_pred ccCh
Confidence 6443
No 44
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-20 Score=178.97 Aligned_cols=217 Identities=16% Similarity=0.068 Sum_probs=151.2
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHH-hcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLI-QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 264 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~ 264 (453)
..++|++|++++|.+....... ++ ..+++|++|+|++|.+++..+..-...+.. +++|++|++++|.++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~-- 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPL---PLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPA-- 159 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCC---SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCC--
T ss_pred ccCceeEEEeeCCEeccchhhh---hhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcch--
Confidence 3467999999999865433221 01 567899999999999886433111112221 5889999999999977
Q ss_pred chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHh-hcCCCCC
Q 012930 265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGAGKSL 343 (453)
Q Consensus 265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~~~~~ 343 (453)
..+..+..+++|++|+|++|++.+...... ......+++|++|++++|.++.... .+.. +. .+
T Consensus 160 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~---~l 223 (310)
T 4glp_A 160 ------FSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG------VCAALAA---AG 223 (310)
T ss_dssp ------CCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHH---HT
T ss_pred ------hhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH------HHHHHHh---cC
Confidence 445667788999999999998765321100 0112356889999999999975211 1122 23 56
Q ss_pred CcccEEEecCCCCChhhHHHHHHHHhCC---CCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930 344 QSLRLLNLRGNNLCKADARDLGSALVHI---PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420 (453)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 420 (453)
++|++|+|++|++++ ..|..+..+ ++|+.|+|++|+|+. +| ..+. ++|++|+|++|+|+..
T Consensus 224 ~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp---~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFAGLEQ------VP---KGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp CCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSSCCCS------CC---SCCC--SCCSCEECCSCCCCSC-
T ss_pred CCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCCCCCc------hh---hhhc--CCCCEEECCCCcCCCC-
Confidence 889999999999987 235555555 699999999999985 55 3343 7999999999999873
Q ss_pred HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+. +..+ ++|+.|++++|.|+++|
T Consensus 288 ----~~-~~~l-~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 288 ----PQ-PDEL-PEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp ----CC-TTSC-CCCSCEECSSTTTSCCC
T ss_pred ----ch-hhhC-CCccEEECcCCCCCCCC
Confidence 11 3443 55999999999998864
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2e-20 Score=194.78 Aligned_cols=245 Identities=21% Similarity=0.214 Sum_probs=177.3
Q ss_pred cCCceeeeehhh--------hcc--ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCcc
Q 012930 151 CDYSKLSYHCQQ--------FGH--YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLA 219 (453)
Q Consensus 151 ~~l~~l~l~~~~--------~~~--~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~ 219 (453)
..++.|.++.+. +.. .++.|+++++.+..++.. +..+++|+.|+|++|.+...... .+.++++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCC
Confidence 566677666542 222 689999999988776654 46789999999999997644322 256889999
Q ss_pred EEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHH---------Hhhc-------------
Q 012930 220 SLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELV---------SFLS------------- 277 (453)
Q Consensus 220 ~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~---------~~l~------------- 277 (453)
+|+|++|.++...+..+.. +++|++|++++|.++......++. +. ..+.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~l~~-L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQA--------TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp EEECCSSCCCBCCTTTTTT--------CTTCCEEECTTSCCSBCCGGGCTT-CSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred EEEeeCCcCCCCChhhhhc--------CCcCcEEECcCCCCCCcChhhhhh-hhhhhcccCccccccCCchhheeeccCC
Confidence 9999999998776655544 689999999999998754321110 00 0000
Q ss_pred --------CCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930 278 --------SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 349 (453)
Q Consensus 278 --------~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L 349 (453)
..++|+.|+|++|.+++. .. +..+++|+.|+|++|.+++..+ ..++ .+++|++|
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L 283 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTDT--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERL 283 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCCC--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEE
T ss_pred cccccccccCCCCCEEECCCCCCCCC--hh-----hccCCCCCEEECCCCccCCCCH--------HHhc---CccCCCEE
Confidence 012466666666666652 11 2446889999999999887544 5555 67899999
Q ss_pred EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHh
Q 012930 350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 429 (453)
Q Consensus 350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 429 (453)
+|++|.++. ++..+..+++|+.|+|++|.++. +| ..+..+++|++|+|++|.|+... +.
T Consensus 284 ~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~------i~---~~~~~l~~L~~L~L~~N~l~~~~-------~~ 342 (597)
T 3oja_B 284 YISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LS 342 (597)
T ss_dssp ECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CC
T ss_pred ECCCCCCCC-----CCcccccCCCCcEEECCCCCCCc------cC---cccccCCCCCEEECCCCCCCCcC-------hh
Confidence 999999996 56666778999999999999986 54 33445589999999999998742 44
Q ss_pred cCCCCCcEEECcCCCCCcc
Q 012930 430 TLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 430 ~~~~~L~~L~Ls~N~l~~~ 448 (453)
. .++|+.|++++|++...
T Consensus 343 ~-~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 343 T-HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp T-TCCCSEEECCSSCEEHH
T ss_pred h-cCCCCEEEeeCCCCCCh
Confidence 4 35699999999998653
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=6.2e-20 Score=196.75 Aligned_cols=192 Identities=17% Similarity=0.163 Sum_probs=120.9
Q ss_pred HhcCCCccEEEcCCCCCChh-----------------HHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH
Q 012930 212 IQNSETLASLEFLHCKLSPS-----------------FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS 274 (453)
Q Consensus 212 ~~~~~~L~~L~L~~n~l~~~-----------------~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~ 274 (453)
+.++++|++|+|++|.+++. .|..+. +. .+++|+.|++++|.+.. .++.
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~----~L~~L~~L~Ls~N~l~~--------~iP~ 509 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WS----NLKDLTDVELYNCPNMT--------QLPD 509 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GG----GCTTCCEEEEESCTTCC--------SCCG
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hc----cCCCCCEEECcCCCCCc--------cChH
Confidence 45677888888888887762 222221 00 15778888888887776 4666
Q ss_pred hhcCCCCccEEEcCCCC-CCh-hHHHHHHHH--HhhCCCCCCEEEcCCCCCCCcccccCcCchHH--hhcCCCCCCcccE
Q 012930 275 FLSSGRSLCSLKLRHCH-LDR-DFGRMVFSS--LLEASSSLSILDLSGNSIGGWLSKYDRSGPLF--SLGAGKSLQSLRL 348 (453)
Q Consensus 275 ~l~~~~~L~~L~L~~n~-l~~-~~~~~l~~~--L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~--~l~~~~~~~~L~~ 348 (453)
.+.++++|++|+|++|+ +++ ..|..+... -+..+++|+.|+|++|.++ ..| . .++ .+++|++
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip--------~~~~l~---~L~~L~~ 577 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP--------ASASLQ---KMVKLGL 577 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC--------CHHHHT---TCTTCCE
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC--------Chhhhh---cCCCCCE
Confidence 77788888888888887 776 666665431 1123457888888888877 333 4 455 5567777
Q ss_pred EEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC-ccEEEccCCCCChhhHHHHHHH
Q 012930 349 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDT 427 (453)
Q Consensus 349 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~ 427 (453)
|+|++|+++. +| .+..+++|+.|+|++|.++. +| ..+..+++ |++|+|++|.++. ++..
T Consensus 578 L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~------lp---~~l~~l~~~L~~L~Ls~N~L~~-----lp~~ 637 (876)
T 4ecn_A 578 LDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIEE------IP---EDFCAFTDQVEGLGFSHNKLKY-----IPNI 637 (876)
T ss_dssp EECTTSCCCB-----CC-CCCTTSEESEEECCSSCCSC------CC---TTSCEECTTCCEEECCSSCCCS-----CCSC
T ss_pred EECCCCCccc-----ch-hhcCCCcceEEECcCCcccc------ch---HHHhhccccCCEEECcCCCCCc-----Cchh
Confidence 7777777763 45 56667777777777777763 44 34555566 7777777777664 3333
Q ss_pred HhcCC-CCCcEEECcCCCCCccc
Q 012930 428 LSTLR-RPPTSLSIADNNLGRFC 449 (453)
Q Consensus 428 l~~~~-~~L~~L~Ls~N~l~~~~ 449 (453)
+.... ++|+.|++++|.|++.+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTS
T ss_pred hhccccCCCCEEECcCCcCCCcc
Confidence 33211 12666666666665543
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=6.2e-20 Score=173.05 Aligned_cols=218 Identities=17% Similarity=0.101 Sum_probs=167.2
Q ss_pred cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHhhc
Q 012930 165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS 242 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~ 242 (453)
..++.++++++....++. .+..+++|++|++++|.+...... .+..+++|++|++++|. ++...+..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~~---- 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHG---- 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhcC----
Confidence 368888888888777654 466789999999999986654222 25678999999999996 77655555543
Q ss_pred cccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 243 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
+++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus 104 ----l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCC
T ss_pred ----CcCCCEEECCCCcCCE--------ECHhHhhCCcCCCEEECCCCcccccCHhHh-----ccCCCccEEECCCCccc
Confidence 5899999999999987 345667889999999999999987433322 45789999999999998
Q ss_pred CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCC
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 402 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~ 402 (453)
+..+ ..+. .+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++ ++. ..+..
T Consensus 167 ~~~~--------~~~~---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~------~~~--~~~~~ 223 (285)
T 1ozn_A 167 SVPE--------RAFR---GLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSA------LPT--EALAP 223 (285)
T ss_dssp EECT--------TTTT---TCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSC------CCH--HHHTT
T ss_pred ccCH--------HHhc---CccccCEEECCCCcccc----cCHhHccCcccccEeeCCCCcCCc------CCH--HHccc
Confidence 6332 2333 67899999999999997 346778899999999999999987 332 44677
Q ss_pred CCCccEEEccCCCCChh-hHHHHHHHHhc
Q 012930 403 CNPLVELYLENCELSGR-GVSQLLDTLST 430 (453)
Q Consensus 403 ~~~L~~L~L~~n~l~~~-~~~~l~~~l~~ 430 (453)
+++|++|++++|.++.. ....+...+..
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 89999999999998643 22234444444
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.8e-19 Score=193.18 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=103.4
Q ss_pred ccceeccccccchH------------------HHhhhh--cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCC
Q 012930 166 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 225 (453)
Q Consensus 166 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 225 (453)
.++.|+|+++.+.. +|..+. ++++|+.|+|++|.+....+ ..+.++++|++|+|++
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP----~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIAC 524 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC----GGGGGCSSCCEEECTT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh----HHHhCCCCCCEEECcC
Confidence 56666666666655 566655 67777777777776443322 2245677777777777
Q ss_pred CC-CCh-hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930 226 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF 301 (453)
Q Consensus 226 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~ 301 (453)
|. +++ ..|..+... ......+++|+.|++++|.++. ++. .+..+++|+.|+|++|.+. ..+ .
T Consensus 525 N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-- 590 (876)
T 4ecn_A 525 NRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A-- 590 (876)
T ss_dssp CTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C--
T ss_pred CCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cch-h--
Confidence 76 776 555555432 1000013467777777777664 333 5666777777777777766 344 2
Q ss_pred HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc-ccEEEecCCCCChhhHHHHHHHHhCCC--CccEEe
Q 012930 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILD 378 (453)
Q Consensus 302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~ 378 (453)
+..+++|+.|+|++|.++. .+ ..+. .+++ |++|+|++|.++. +|..+...+ +|+.|+
T Consensus 591 ---~~~L~~L~~L~Ls~N~l~~-lp--------~~l~---~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 591 ---FGTNVKLTDLKLDYNQIEE-IP--------EDFC---AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp ---CCTTSEESEEECCSSCCSC-CC--------TTSC---EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEE
T ss_pred ---hcCCCcceEEECcCCcccc-ch--------HHHh---hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEE
Confidence 2345667777777776662 22 3333 3444 5566666665553 343333332 255555
Q ss_pred CCCCCCCh
Q 012930 379 ISDNTIED 386 (453)
Q Consensus 379 Ls~N~i~~ 386 (453)
+++|.+++
T Consensus 651 Ls~N~l~g 658 (876)
T 4ecn_A 651 FSYNKIGS 658 (876)
T ss_dssp CCSSCTTT
T ss_pred CcCCcCCC
Confidence 55555543
No 49
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=8.4e-20 Score=174.37 Aligned_cols=213 Identities=19% Similarity=0.134 Sum_probs=157.9
Q ss_pred ccceeccccccchH-HHhhh--hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhc
Q 012930 166 YARCLRLQNALCVE-ETCQL--LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 242 (453)
Q Consensus 166 ~l~~l~L~~~~~~~-~~~~l--~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~ 242 (453)
.++.++++++.... .+..+ ...++|++|++++|.+......+....+..+++|++|+|++|.++...+..+..
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---- 167 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA---- 167 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC----
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc----
Confidence 47888888877654 33344 567999999999999765322222222447899999999999997665554432
Q ss_pred cccCCcceeEEEccCCCCCCCCchhhHHHHHH--hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCC
Q 012930 243 KRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 320 (453)
Q Consensus 243 ~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 320 (453)
+++|++|++++|.+... ..++. .+..+++|++|+|++|.++. .+ .++.+++..+++|++|+|++|.
T Consensus 168 ----l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~-~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 168 ----FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMET-PT-GVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp ----CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-HHHHHHHHHTCCCSSEECTTSC
T ss_pred ----CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCc-hH-HHHHHHHhcCCCCCEEECCCCC
Confidence 58899999999997641 01322 23678999999999999974 22 2333444557999999999999
Q ss_pred CCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhc
Q 012930 321 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 400 (453)
Q Consensus 321 l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l 400 (453)
+++..| ..+..+..+++|++|+|++|+|+. +|..+. ++|+.|+|++|+|++ +|. +
T Consensus 236 l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~------~~~----~ 290 (310)
T 4glp_A 236 LRATVN--------PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR------APQ----P 290 (310)
T ss_dssp CCCCCC--------SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS------CCC----T
T ss_pred CCccch--------hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC------Cch----h
Confidence 998544 455544445799999999999995 565553 799999999999997 432 4
Q ss_pred CCCCCccEEEccCCCCChh
Q 012930 401 ERCNPLVELYLENCELSGR 419 (453)
Q Consensus 401 ~~~~~L~~L~L~~n~l~~~ 419 (453)
..+++|+.|+|++|+|++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TSCCCCSCEECSSTTTSCC
T ss_pred hhCCCccEEECcCCCCCCC
Confidence 6679999999999999874
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.1e-19 Score=182.09 Aligned_cols=225 Identities=17% Similarity=0.118 Sum_probs=170.8
Q ss_pred eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930 169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 248 (453)
Q Consensus 169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~ 248 (453)
.++..+..+..+|..+. .+++.|+|++|.+...... .+.++++|++|+|++|.|+...+..+.. +.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--------l~ 112 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNG--------LA 112 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTT--------CS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccC--------Cc
Confidence 34445544554554332 6899999999997654322 2568899999999999998776665544 68
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
+|++|++++|.++. .....+..+++|++|+|++|.+....... +..+++|++|++++|...+..+
T Consensus 113 ~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~-- 177 (440)
T 3zyj_A 113 NLNTLELFDNRLTT--------IPNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS-- 177 (440)
T ss_dssp SCCEEECCSSCCSS--------CCTTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--
T ss_pred cCCEEECCCCcCCe--------eCHhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeC--
Confidence 99999999999987 23346788999999999999998633322 3457999999999965433222
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
. ..+..+++|++|+|++|+++. ++ .+..+++|+.|+|++|.|++. .| ..+..+++|++
T Consensus 178 ------~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~ 235 (440)
T 3zyj_A 178 ------E--GAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAI-----RP---GSFQGLMHLQK 235 (440)
T ss_dssp ------T--TTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEE-----CT---TTTTTCTTCCE
T ss_pred ------c--chhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCcc-----Ch---hhhccCccCCE
Confidence 1 223478999999999999996 44 477889999999999999872 23 56888899999
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
|+|++|+|+.. .+..+.. .++|+.|+|++|.|++..
T Consensus 236 L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 236 LWMIQSQIQVI----ERNAFDN-LQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp EECTTCCCCEE----CTTSSTT-CTTCCEEECTTSCCCCCC
T ss_pred EECCCCceeEE----ChhhhcC-CCCCCEEECCCCCCCccC
Confidence 99999999885 3445555 356999999999998644
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.1e-19 Score=170.15 Aligned_cols=202 Identities=15% Similarity=0.115 Sum_probs=151.8
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
.+.+|+.|++++|.+..... +..+++|++|++++|.+++. ..+.. +++|++|++++|.++.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l~~~--~~l~~--------l~~L~~L~L~~n~l~~--- 99 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKLHDI--SALKE--------LTNLTYLILTGNQLQS--- 99 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCCCCC--GGGTT--------CTTCCEEECTTSCCCC---
T ss_pred cccceeeeeeCCCCcccccc------cccCCCCcEEECCCCCCCCc--hhhcC--------CCCCCEEECCCCccCc---
Confidence 45788999998888554321 45788999999999988763 22222 5889999999999887
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+ ..+. .+++
T Consensus 100 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~ 158 (272)
T 3rfs_A 100 -----LPNGVFDKLTNLKELVLVENQLQSLPDGV-----FDKLTNLTYLNLAHNQLQSLPK--------GVFD---KLTN 158 (272)
T ss_dssp -----CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTT
T ss_pred -----cChhHhcCCcCCCEEECCCCcCCccCHHH-----hccCCCCCEEECCCCccCccCH--------HHhc---cCcc
Confidence 33445678899999999999988643322 2457899999999999886433 2233 6789
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHH
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 425 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 425 (453)
|++|++++|++++ ..+..+..+++|+.|++++|.+++ ++. ..+..+++|++|++++|.++..
T Consensus 159 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~~~------ 220 (272)
T 3rfs_A 159 LTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQYIWLHDNPWDCT------ 220 (272)
T ss_dssp CCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBCCC------
T ss_pred CCEEECCCCCcCc----cCHHHhcCCccCCEEECCCCcCCc------cCH--HHHhCCcCCCEEEccCCCcccc------
Confidence 9999999999986 234456788999999999999986 332 4467789999999999988753
Q ss_pred HHHhcCCCCCcEEECcCCCCCccccc
Q 012930 426 DTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 426 ~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
.+.|+.|+++.|.+++.+|.
T Consensus 221 ------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 221 ------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ------TTTTHHHHHHHHHTGGGBBC
T ss_pred ------CcHHHHHHHHHHhCCCcccC
Confidence 23478888888888887764
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.4e-19 Score=181.99 Aligned_cols=225 Identities=19% Similarity=0.119 Sum_probs=170.0
Q ss_pred eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCc
Q 012930 169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 248 (453)
Q Consensus 169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~ 248 (453)
.++.++..+..++..+. ++++.|+|++|.+...... .+.++++|++|+|++|.|+...+..+.. +.
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~ 123 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNG--------LA 123 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTT--------CT
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccC--------cc
Confidence 34444444444443222 6899999999997654332 2568899999999999998776665544 68
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
+|++|++++|.++. .....+..+++|++|+|++|.+....... +..+++|+.|++++|...+..+
T Consensus 124 ~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~-- 188 (452)
T 3zyi_A 124 SLNTLELFDNWLTV--------IPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS-- 188 (452)
T ss_dssp TCCEEECCSSCCSB--------CCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC--
T ss_pred cCCEEECCCCcCCc--------cChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccC--
Confidence 99999999999987 33445778999999999999998633222 3557999999999965433222
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
. ..+..+++|++|+|++|++++ ++ .+..+++|+.|+|++|.|++. .| ..+..+++|++
T Consensus 189 ------~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~ 246 (452)
T 3zyi_A 189 ------E--GAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEELEMSGNHFPEI-----RP---GSFHGLSSLKK 246 (452)
T ss_dssp ------T--TTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEEECTTSCCSEE-----CG---GGGTTCTTCCE
T ss_pred ------h--hhccCCCCCCEEECCCCcccc-----cc-cccccccccEEECcCCcCccc-----Cc---ccccCccCCCE
Confidence 1 223378999999999999986 33 477889999999999999872 33 56888899999
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
|+|++|+++.. .+..+..+ ++|+.|+|++|.|++..
T Consensus 247 L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 247 LWVMNSQVSLI----ERNAFDGL-ASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EECTTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred EEeCCCcCceE----CHHHhcCC-CCCCEEECCCCcCCccC
Confidence 99999999885 34455663 56999999999998644
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.5e-19 Score=171.58 Aligned_cols=215 Identities=19% Similarity=0.143 Sum_probs=155.6
Q ss_pred ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....++ ..+..+++|++|+|++|.+..... +..+++|++|++++|.+++.. .
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~---------~-- 97 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V-- 97 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEE---------E--
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccccc---------C--
Confidence 5777788777766644 456677888888888888654322 457788888888888776422 1
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
.++|++|++++|.++... ...+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 98 --~~~L~~L~l~~n~l~~~~-----------~~~~~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 98 --GPSIETLHAANNNISRVS-----------CSRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp --CTTCCEEECCSSCCSEEE-----------ECCCSSCEEEECCSSCCCSGGGBCT-----GGGSSEEEEECTTSCCCEE
T ss_pred --CCCcCEEECCCCccCCcC-----------ccccCCCCEEECCCCCCCCccchhh-----hccCCCCEEECCCCCCCcc
Confidence 367888888888887621 1246789999999998887433332 3368899999999998864
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ ..+. ..+++|++|+|++|.++. ++ ....+++|+.|++++|.|++ +| ..+..++
T Consensus 160 ~~--------~~~~--~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------l~---~~~~~l~ 214 (317)
T 3o53_A 160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA 214 (317)
T ss_dssp EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred cH--------HHHh--hccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc------ch---hhhcccC
Confidence 33 3332 145789999999999886 22 23358899999999999987 44 3356668
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
+|++|+|++|+|+. ++..+.. .++|+.|++++|.++
T Consensus 215 ~L~~L~L~~N~l~~-----l~~~~~~-l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 215 GVTWISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCSEEECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCCB
T ss_pred cccEEECcCCcccc-----hhhHhhc-CCCCCEEEccCCCcc
Confidence 99999999999986 4556666 456999999999987
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.7e-20 Score=176.13 Aligned_cols=213 Identities=16% Similarity=0.087 Sum_probs=167.6
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.|+++++.....+. +..+++|++|++++|.+... ...++|++|++++|.++...+..
T Consensus 59 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~~~---------- 118 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCSR---------- 118 (317)
T ss_dssp TCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEECC----------
T ss_pred cCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCccc----------
Confidence 58888898887765444 77889999999999986542 24489999999999998654322
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+ ...+++|++|++++|.+++.
T Consensus 119 -~~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 119 -GQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp -CSSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSCCCEE-
T ss_pred -cCCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCCcccHHHH----hhccCcCCEEECCCCcCccc-
Confidence 4789999999999988 344566788999999999999988555444 23468999999999999852
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
.....+++|++|+|++|+++. ++..+..+++|+.|++++|.|+. +| ..+..+++
T Consensus 185 ------------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~------l~---~~~~~l~~ 238 (317)
T 3o53_A 185 ------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN 238 (317)
T ss_dssp ------------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred ------------ccccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc------hh---hHhhcCCC
Confidence 111246899999999999996 55668899999999999999996 66 55788899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcC
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIAD 442 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 442 (453)
|+.|++++|.++... ++..+..+ +.|+.|++++
T Consensus 239 L~~L~l~~N~~~~~~---~~~~~~~~-~~L~~l~l~~ 271 (317)
T 3o53_A 239 LEHFDLRGNGFHCGT---LRDFFSKN-QRVQTVAKQT 271 (317)
T ss_dssp CCEEECTTCCCBHHH---HHHHHHTC-HHHHHHHHHH
T ss_pred CCEEEccCCCccCcC---HHHHHhcc-ccceEEECCC
Confidence 999999999998432 45555552 3377777763
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.2e-19 Score=170.32 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=104.1
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
.+|++|++++|.+...... .+..+++|++|++++|.++...+..+.. +++|++|++++|.++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~----- 90 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS----- 90 (276)
T ss_dssp TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccC--------CcCCCEEECCCCccCc-----
Confidence 3466666666654432211 1345566666666666665443333322 3556666666666654
Q ss_pred hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 347 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~ 347 (453)
..+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++.. +|..+. .+++|+
T Consensus 91 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~-------l~~~~~---~l~~L~ 152 (276)
T 2z62_A 91 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE 152 (276)
T ss_dssp ---ECTTTTTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred ---cChhhhcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceec-------Cchhhc---cCCCCC
Confidence 22234555666666666666655422211 133456666666666665421 113344 445666
Q ss_pred EEEecCCCCChhhHHHHHHHHhCCCCcc-EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH
Q 012930 348 LLNLRGNNLCKADARDLGSALVHIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 426 (453)
Q Consensus 348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 426 (453)
+|++++|++++.....+ ..+..++.|. .|++++|.+++ ++ .......+|++|++++|+++.. ...
T Consensus 153 ~L~Ls~N~l~~~~~~~~-~~l~~L~~l~l~L~ls~n~l~~------~~---~~~~~~~~L~~L~L~~n~l~~~----~~~ 218 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLKELALDTNQLKSV----PDG 218 (276)
T ss_dssp EEECCSSCCCEECGGGG-HHHHTCTTCCEEEECCSSCCCE------EC---TTSSCSCCEEEEECCSSCCSCC----CTT
T ss_pred EEECCCCCCCcCCHHHh-hhhhhccccceeeecCCCcccc------cC---ccccCCCcccEEECCCCceeec----CHh
Confidence 66666666654211111 1122233333 56666666654 22 1122223566666666666552 112
Q ss_pred HHhcCCCCCcEEECcCCCCCcc
Q 012930 427 TLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 427 ~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
.+.. .++|++|++++|+++..
T Consensus 219 ~~~~-l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 219 IFDR-LTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTTT-CCSCCEEECCSSCBCCC
T ss_pred Hhcc-cccccEEEccCCccccc
Confidence 2233 23466666666666543
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=178.19 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=29.3
Q ss_pred hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
.+..+++|+.|++++|.+.+..+..+..... .++|++|++++|.+++
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISNVKLQG 261 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEEEEEES
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeecccccC
Confidence 5667777777777777776665555544332 2466666666666554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=6.7e-19 Score=171.21 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=167.1
Q ss_pred ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhcc
Q 012930 166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSK 243 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~ 243 (453)
.++.++++++....++.. +..+++|++|++++|.+..... ...+..+++|++|++++| .++...+..+..
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----- 172 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAG----- 172 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEECTTTTTT-----
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc---hhhhccCCCCcEEECCCCccccccCHHHccC-----
Confidence 578888888877776655 5667888888888887653211 012456788889998888 466544444433
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
+++|++|++++|.++. ..+..+..+++|++|++++|.+.. .+..+. ..+++|+.|++++|.+++
T Consensus 173 ---l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~----~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 173 ---LTFLEELEIDASDLQS--------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFV----DVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ---CCEEEEEEEEETTCCE--------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHH----HHTTTEEEEEEESCBCTT
T ss_pred ---CCCCCEEECCCCCcCc--------cCHHHHhccccCCeecCCCCcccc-chhhhh----hhcccccEEECCCCcccc
Confidence 5889999999998877 445677889999999999999865 444332 336899999999999986
Q ss_pred cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
..+ ..+........++.++++++.+++.++..+|..+..+++|+.|++++|+|+. +|. ..+..+
T Consensus 237 ~~~--------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~------i~~--~~~~~l 300 (353)
T 2z80_A 237 FHF--------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS------VPD--GIFDRL 300 (353)
T ss_dssp CCC--------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC------CCT--TTTTTC
T ss_pred ccc--------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc------cCH--HHHhcC
Confidence 433 2333333567899999999999999999999999999999999999999986 552 335788
Q ss_pred CCccEEEccCCCCChhh--HHHHHHHHhc
Q 012930 404 NPLVELYLENCELSGRG--VSQLLDTLST 430 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~--~~~l~~~l~~ 430 (453)
++|++|++++|+++... ...+...+..
T Consensus 301 ~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 99999999999998753 3344455554
No 58
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.75 E-value=1.9e-17 Score=145.58 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=75.4
Q ss_pred HHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930 269 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 347 (453)
Q Consensus 269 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~ 347 (453)
.+.+...+..+++|++|+|++| .+++.+...++.++..+ ++|++|+|++|.|++.+ +..+...+. ..++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g----~~~l~~~L~---~n~~L~ 96 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPV----AFALAEMLK---VNNTLK 96 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHH----HHHHHHHHH---HCSSCC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHH----HHHHHHHHH---hCCCcC
Confidence 4467777777888888888888 88887777777765442 55555555555555321 122223333 223455
Q ss_pred EEEecCCCCChhhHHHHHHHHhCCCCccEEeC--CCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930 348 LLNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420 (453)
Q Consensus 348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 420 (453)
+|+|++|.|++.|+..++.++..+++|++|+| ++|.|+++|+..+.. .+..++.|++|+|++|.+++.|
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN----MLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH----HHHHCSSCCEEECCCSSHHHHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH----HHHhCCCcCEEeccCCCCChHH
Confidence 55555555555555555555555555555555 445555555444442 2233344555555555544443
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.1e-19 Score=189.71 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=92.6
Q ss_pred hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930 275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 354 (453)
Q Consensus 275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n 354 (453)
.+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++.. +|..+ ..+++|++|++++|
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~-------~~~~~---~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT-------LSNVF---ANTTNLTFLDLSKC 483 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE-------ECSCC---TTCTTCCEEECTTS
T ss_pred hhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc-------hHHhh---ccCCCCCEEECCCC
Confidence 34455566666666665554333322 23456666666666555310 11223 36678888888888
Q ss_pred CCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCC
Q 012930 355 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP 434 (453)
Q Consensus 355 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~ 434 (453)
++++ ..+..+..+++|+.|++++|++++. .| ..+..+++|++|++++|+|+. ++..+..+.++
T Consensus 484 ~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~l~~N~l~~-----~p~~~~~l~~~ 546 (606)
T 3vq2_A 484 QLEQ----ISWGVFDTLHRLQLLNMSHNNLLFL-----DS---SHYNQLYSLSTLDCSFNRIET-----SKGILQHFPKS 546 (606)
T ss_dssp CCCE----ECTTTTTTCTTCCEEECCSSCCSCE-----EG---GGTTTCTTCCEEECTTSCCCC-----EESCGGGSCTT
T ss_pred cCCc----cChhhhcccccCCEEECCCCcCCCc-----CH---HHccCCCcCCEEECCCCcCcc-----cCHhHhhhccc
Confidence 8876 3456677888888888888888762 34 557777888888888888876 45556665556
Q ss_pred CcEEECcCCCCCcc
Q 012930 435 PTSLSIADNNLGRF 448 (453)
Q Consensus 435 L~~L~Ls~N~l~~~ 448 (453)
|++|++++|++...
T Consensus 547 L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 547 LAFFNLTNNSVACI 560 (606)
T ss_dssp CCEEECCSCCCCCS
T ss_pred CcEEEccCCCcccC
Confidence 88888888887653
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=4.3e-20 Score=178.13 Aligned_cols=139 Identities=21% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChh
Q 012930 280 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 359 (453)
Q Consensus 280 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~ 359 (453)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+. .+++|++|++++|+++.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~L~L~~N~l~~- 255 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIEN--------GSLS---FLPTLRELHLDNNKLSR- 255 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCT--------TGGG---GCTTCCEEECCSSCCCB-
T ss_pred CCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCCh--------hHhh---CCCCCCEEECCCCcCee-
Confidence 689999999999887544433 457899999999999987543 3455 67899999999999995
Q ss_pred hHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012930 360 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 439 (453)
Q Consensus 360 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~ 439 (453)
+|..+..+++|+.|++++|+|++.+...+.+. ........|+.|++++|.++..++ .+..+.. .+.|+.|+
T Consensus 256 ----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~N~~~~~~~--~~~~~~~-l~~L~~l~ 326 (332)
T 2ft3_A 256 ----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--GFGVKRAYYNGISLFNNPVPYWEV--QPATFRC-VTDRLAIQ 326 (332)
T ss_dssp ----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS--SCCSSSCCBSEEECCSSSSCGGGS--CGGGGTT-BCCSTTEE
T ss_pred ----cChhhhcCccCCEEECCCCCCCccChhHcccc--ccccccccccceEeecCccccccc--Ccccccc-cchhhhhh
Confidence 78889999999999999999998543333210 000113679999999999874322 2345555 46699999
Q ss_pred CcCCC
Q 012930 440 IADNN 444 (453)
Q Consensus 440 Ls~N~ 444 (453)
+++|.
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 99884
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.7e-19 Score=183.02 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=26.1
Q ss_pred cceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCC
Q 012930 167 ARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS 229 (453)
Q Consensus 167 l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~ 229 (453)
++.|+++++.+..++ ..+..+++|+.|+|++|.+....+ +..+++|++|+|++|.|+
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEE
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCC
Confidence 444444444444332 234444555555555555432221 334455555555555444
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=1e-19 Score=189.87 Aligned_cols=241 Identities=18% Similarity=0.094 Sum_probs=185.8
Q ss_pred cCCceeeeehhhh------c--cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEE
Q 012930 151 CDYSKLSYHCQQF------G--HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 222 (453)
Q Consensus 151 ~~l~~l~l~~~~~------~--~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~ 222 (453)
.+++.+.++...+ . ..++.+++.++....++ .+ .+++|++|++++|...... .+..+++|++|+
T Consensus 285 ~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF------KKVALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEE
T ss_pred CCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch------hhccCCCCCEEE
Confidence 4556666555422 1 16889999999887666 45 8899999999999633222 145789999999
Q ss_pred cCCCCCChhH--HHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHH
Q 012930 223 FLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 300 (453)
Q Consensus 223 L~~n~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 300 (453)
+++|.++... +..+.. +++|++|++++|.++. ++..+..+++|++|++++|.+.+..+...
T Consensus 357 ls~n~l~~~~~~~~~~~~--------~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLG--------TNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CCSSCEEEEEECCHHHHC--------CSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred CcCCccCCCcchhhhhcc--------CCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCccCCccChhh
Confidence 9999987653 444443 5899999999999876 44667789999999999999877544111
Q ss_pred HHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCC
Q 012930 301 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDIS 380 (453)
Q Consensus 301 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 380 (453)
+..+++|++|++++|.+++..+ ..+. .+++|++|++++|.+++. .++..+..+++|+.|+++
T Consensus 420 ----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 420 ----FLSLEKLLYLDISYTNTKIDFD--------GIFL---GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp ----TTTCTTCCEEECTTSCCEECCT--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECT
T ss_pred ----hhccccCCEEECcCCCCCccch--------hhhc---CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECC
Confidence 2457999999999999986544 4444 778999999999998862 146678899999999999
Q ss_pred CCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 381 DNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 381 ~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+|.+++. .| ..+..+++|++|++++|+++.. .+..+..+ ++|++|++++|+|+.
T Consensus 482 ~n~l~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 482 KCQLEQI-----SW---GVFDTLHRLQLLNMSHNNLLFL----DSSHYNQL-YSLSTLDCSFNRIET 535 (606)
T ss_dssp TSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCE----EGGGTTTC-TTCCEEECTTSCCCC
T ss_pred CCcCCcc-----Ch---hhhcccccCCEEECCCCcCCCc----CHHHccCC-CcCCEEECCCCcCcc
Confidence 9999873 33 5578889999999999999885 35666664 569999999999984
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.9e-18 Score=163.45 Aligned_cols=60 Identities=28% Similarity=0.434 Sum_probs=27.3
Q ss_pred CCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 343 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 343 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+++|++|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|++++
T Consensus 150 l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~------~~~----l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKISD------ISP----LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCC------CGG----GGGCTTCCEEECTTSCCCB
T ss_pred CCCccEEEccCCcCCC-----Chh-hcCCCCCCEEECCCCccCc------Chh----hcCCCCCCEEEccCCccCc
Confidence 3445555555555443 222 4444555555555555544 221 2333445555555555444
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.1e-19 Score=167.21 Aligned_cols=210 Identities=17% Similarity=0.096 Sum_probs=135.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++.+..++..+. ++++.|+|++|.+...... .+..+++|++|+|++|.|+..... .
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~----------~ 74 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQVD----------G 74 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEECC----------S
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccCC----------C
Confidence 45666666666665554332 5778888888876543222 245677888888888877753321 1
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
.+++|++|++++|.++. ++..+..+++|++|++++|+++...+..+ ..+++|++|++++|.+++..
T Consensus 75 ~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp CCTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCCSSTT-----TTCTTCCEEECTTSCCCCCC
T ss_pred CCCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccCHHHH-----cCCCCCCEEECCCCCCCccC
Confidence 15778888888888765 44456677888888888888775322222 44678888888888877532
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
+ ..+ ..+++|+.|+|++|+|+. ++. .+..+++|+.|+|++|+|+. +| ..+....
T Consensus 141 ~--------~~~---~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~------ip---~~~~~~~ 195 (290)
T 1p9a_G 141 P--------GLL---TPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSH 195 (290)
T ss_dssp T--------TTT---TTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTC
T ss_pred h--------hhc---ccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc------cC---hhhcccc
Confidence 2 222 256778888888888775 343 45667888888888888875 55 4455566
Q ss_pred CccEEEccCCCCChh-hHHHHHHHHhc
Q 012930 405 PLVELYLENCELSGR-GVSQLLDTLST 430 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~-~~~~l~~~l~~ 430 (453)
.|+.|+|++|.+... ....+...+..
T Consensus 196 ~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred cCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 788888888876532 22334445544
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=175.80 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=164.9
Q ss_pred ccceeccccccch-HHHhhh-----hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHH
Q 012930 166 YARCLRLQNALCV-EETCQL-----LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 239 (453)
Q Consensus 166 ~l~~l~L~~~~~~-~~~~~l-----~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 239 (453)
.++.++++++... .++..+ ..+++|+.+++++|.+. .....+..++. ..+|++|++++|.+......
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~----- 320 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCP----- 320 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHH-TCCCSEEEEESSCCCCCCCC-----
T ss_pred cccEEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccc-cCceeEEEcCCCccccccch-----
Confidence 5777777777665 455555 66788888888887761 11111222222 24788999998877643210
Q ss_pred hhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcC
Q 012930 240 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLS 317 (453)
Q Consensus 240 L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls 317 (453)
..+++|++|++++|.+++ ..+..+..+++|++|++++|++.+ ..+..+ ..+++|++|+++
T Consensus 321 -----~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----~~l~~L~~L~Ls 382 (520)
T 2z7x_B 321 -----SKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEMT-----TQMKSLQQLDIS 382 (520)
T ss_dssp -----SSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-----TTCTTCCEEECC
T ss_pred -----hhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHHH-----hhCCCCCEEECC
Confidence 116889999999999988 566777899999999999999986 233333 457999999999
Q ss_pred CCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHH
Q 012930 318 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 397 (453)
Q Consensus 318 ~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~ 397 (453)
+|.+++..+ . ..+..+++|++|++++|++++. ++..+. ++|+.|++++|+|+. +|
T Consensus 383 ~N~l~~~l~--------~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~------ip--- 437 (520)
T 2z7x_B 383 QNSVSYDEK--------K--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS------IP--- 437 (520)
T ss_dssp SSCCBCCGG--------G--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC------CC---
T ss_pred CCcCCcccc--------c--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc------cc---
Confidence 999987433 2 1233678999999999999863 443332 789999999999986 66
Q ss_pred hhcCCCCCccEEEccCCCCChhhHHHHHHH-HhcCCCCCcEEECcCCCCCccc
Q 012930 398 QASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 398 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
..+..+++|++|++++|+|+. ++.. +.. .++|++|++++|++....
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~-l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKS-----VPDGIFDR-LTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-----CCTTTTTT-CTTCCEEECCSSCBCCCH
T ss_pred hhhhcCCCCCEEECCCCcCCc-----cCHHHhcc-CCcccEEECcCCCCcccC
Confidence 445577999999999999986 3433 555 356999999999987643
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=2.8e-17 Score=165.95 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=49.1
Q ss_pred hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCC
Q 012930 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 263 (453)
Q Consensus 184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~ 263 (453)
+..+++|+.|++++|.+.... .+..+++|++|++++|.+++..+ +.. +++|+.|++++|.++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISDITP--LGI--------LTNLDELSLNGNQLKDI 236 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC
T ss_pred hccCCCCCEEECcCCcCCCCh------hhccCCCCCEEEecCCccccccc--ccc--------cCCCCEEECCCCCcccc
Confidence 334455555555555543221 13345555555555555544322 110 34455555555555441
Q ss_pred CchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 264 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 264 ~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 237 ----------~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 237 ----------GTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp ----------GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCC
T ss_pred ----------hhhhcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCCccCc
Confidence 123444555555555555544221 1234455555555555443
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=3.4e-18 Score=176.15 Aligned_cols=92 Identities=28% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChh
Q 012930 308 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 387 (453)
Q Consensus 308 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 387 (453)
+++|++|++++|.+++..+ .....+..+++|++|++++|++++.. ..+..+..+++|+.|++++|+++.
T Consensus 333 l~~L~~L~Ls~N~l~~~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYL--------KNSACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp CTTCCEEECCSSCCCHHHH--------HHHTCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred CccccEEEccCCccccccc--------cchhhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCcc-
Confidence 4666666666666664221 22222235566777777777776511 112346667777777777777664
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+| ..+..+++|++|++++|.++.
T Consensus 402 -----lp---~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 402 -----MP---DSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp -----CC---SCCCCCTTCCEEECTTSCCSC
T ss_pred -----CC---hhhcccccccEEECCCCCccc
Confidence 44 345555666666666666554
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=4.3e-17 Score=169.42 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=150.4
Q ss_pred hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccC------
Q 012930 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI------ 257 (453)
Q Consensus 184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~------ 257 (453)
+..+++|++|++++|.+.... ...+...+++|++|++++| +++.++..+... +++|++|++.+
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~-------~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST-------CKDLRELRVFPSEPFVM 353 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH-------CTTCCEEEEECSCTTCS
T ss_pred HHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh-------CCCCCEEEEecCccccc
Confidence 345678888888888854322 3344567888899988888 666666666654 57788888833
Q ss_pred ---CCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcC--C----CCCCCccccc
Q 012930 258 ---SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKY 328 (453)
Q Consensus 258 ---n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~----n~l~~~~~~~ 328 (453)
+.+++ ..+......+++|++|.+..|.+++..+..++.. +++|+.|+++ + +.+++...
T Consensus 354 ~~~~~l~~-------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~-- 420 (594)
T 2p1m_B 354 EPNVALTE-------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPL-- 420 (594)
T ss_dssp SCSSCCCH-------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCT--
T ss_pred ccCCCCCH-------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCch--
Confidence 34444 1233333457888888888888888777666543 6889999988 3 44552100
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
...++..+. .+++|+.|++++ .+++.++..+.. .+++|+.|+|++|.+++.|+..++. .+++|++
T Consensus 421 -~~~~~~l~~---~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~ 485 (594)
T 2p1m_B 421 -DIGFGAIVE---HCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRK 485 (594)
T ss_dssp -HHHHHHHHH---HCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCE
T ss_pred -hhHHHHHHh---hCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh-------cCCCcCE
Confidence 011222333 567888888877 788765444432 4778888999888888887666642 2478888
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 409 LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 409 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|++++|.+++.+...+...+. +|++|++++|.+++.+.
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLE----TMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGG----GSSEEEEESSCCBHHHH
T ss_pred EECcCCCCcHHHHHHHHHhCC----CCCEEeeeCCCCCHHHH
Confidence 999998887776555444443 38889998888866553
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=4e-19 Score=166.68 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=163.8
Q ss_pred cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++....++. .+..+++|++|++++|.+...... .+..+++|++|+|++|.++...+..+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG----- 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT-----
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcC-----
Confidence 358888999888776655 567789999999999986644322 2567899999999999998776555543
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh-HHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
+.+|++|++++|.+... ....+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.++
T Consensus 99 ---l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASL--------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ---CTTCCEEECTTSCCCCS--------TTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSSCCC
T ss_pred ---CccccEEECCCCCcccc--------CchhcccCCCCCEEECcCCccceecCchhh-----ccCCCCCEEECCCCCCC
Confidence 68999999999999872 223477899999999999998762 24333 44799999999999998
Q ss_pred CcccccCcCchHHhhcCCCCCCccc-EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcC
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 401 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~ 401 (453)
+..+ ..+..+..++.|. .|++++|.++. ++.......+|+.|++++|.++. +|. ..+.
T Consensus 163 ~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~------~~~--~~~~ 221 (276)
T 2z62_A 163 SIYC--------TDLRVLHQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKS------VPD--GIFD 221 (276)
T ss_dssp EECG--------GGGHHHHTCTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSC------CCT--TTTT
T ss_pred cCCH--------HHhhhhhhccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceee------cCH--hHhc
Confidence 6433 3344322444454 89999999996 44444455689999999999987 442 4467
Q ss_pred CCCCccEEEccCCCCChhh--HHHHHHHHhc
Q 012930 402 RCNPLVELYLENCELSGRG--VSQLLDTLST 430 (453)
Q Consensus 402 ~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~ 430 (453)
.+++|++|++++|+++... ...+...+..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 7899999999999988643 2334444443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.7e-19 Score=181.50 Aligned_cols=212 Identities=17% Similarity=0.096 Sum_probs=167.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.|++++|.+...+. +..+++|+.|+|++|.+.... ..++|++|++++|.++...+..
T Consensus 59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---------~~~~L~~L~L~~N~l~~~~~~~---------- 118 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---------VGPSIETLHAANNNISRVSCSR---------- 118 (487)
T ss_dssp TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---------ECTTCCEEECCSSCCCCEEECC----------
T ss_pred CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---------CCCCcCEEECcCCcCCCCCccc----------
Confidence 58889999888765444 778899999999999965432 3489999999999998754322
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|+.|++++|.++. ..+..+..+++|++|+|++|.+++..+..+. ..+++|++|+|++|.+++.
T Consensus 119 -l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 119 -GQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp -CSSCEEEECCSSCCCS--------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEE-
T ss_pred -cCCCCEEECCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCCcChHHHh----hhCCcccEEecCCCccccc-
Confidence 4789999999999998 4556778899999999999999986665542 2468999999999999863
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
.....+++|++|+|++|.+++ ++..+..+++|+.|+|++|.|++ +| ..+..+++
T Consensus 185 ------------~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~l~~l~~ 238 (487)
T 3oja_A 185 ------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN 238 (487)
T ss_dssp ------------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred ------------cccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc------cc---hhhccCCC
Confidence 112257899999999999997 56668899999999999999997 66 55788899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA 441 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 441 (453)
|+.|++++|.++... ++..+.. .+.|+.++++
T Consensus 239 L~~L~l~~N~l~c~~---~~~~~~~-l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGT---LRDFFSK-NQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHH---HHHHHTT-CHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcc---hHHHHHh-CCCCcEEecc
Confidence 999999999998542 4444544 2336666664
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1.3e-18 Score=179.99 Aligned_cols=127 Identities=17% Similarity=0.056 Sum_probs=97.2
Q ss_pred cccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++....++ ..+..+++|++|+|++|.+...... .+.++++|++|+|++|.++.....
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~lp~~--------- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQNISCC--------- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCCEECSC---------
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCCccCcc---------
Confidence 47899999999888765 4677889999999999997654332 256789999999999999843222
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCC--CEEEcCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL--SILDLSGNSI 321 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l 321 (453)
.+.+|++|++++|.++... .+..++++++|++|++++|.+.+..... +++| ++|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~--------l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQLDLLP--------VAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTTTTGG--------GTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccCchhh--------hhhceeeEEEeecccc
Confidence 1689999999999988622 2357889999999999999997633322 2444 7777777766
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=2.9e-18 Score=181.31 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=113.8
Q ss_pred ccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.++++++....+ +..+.++++|++|+|++|.+...... .+.++++|++|++++|.++...+..+..
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 119 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVK------ 119 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTT------
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccc------
Confidence 577777777766554 34456778888888888875533221 2456778888888888776554444433
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+.+|++|++++|.++. ..+..+.++++|++|++++|.+++..+..+.. ..+++|++|++++|.+++.
T Consensus 120 --l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 120 --QKNLITLDLSHNGLSS--------TKLGTQVQLENLQELLLSNNKIQALKSEELDI---FANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp --CTTCCEEECCSSCCSC--------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG---GTTCEESEEECTTCCCCCB
T ss_pred --cCCCCEEECCCCcccc--------cCchhhcccccCCEEEccCCcccccCHHHhhc---cccccccEEECCCCccccc
Confidence 5778888888888776 23344567888888888888887654443311 1347788888888888764
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
.+ ..+. .+.+|+.|++.+|.+.......++..+ ..++|+.|++++|.+++
T Consensus 187 ~~--------~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 187 SP--------GCFH---AIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CT--------TGGG---GSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCE
T ss_pred Ch--------hhhh---hhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccc
Confidence 44 3333 344555555555555544333333332 22445555555554443
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=6.5e-18 Score=178.63 Aligned_cols=239 Identities=21% Similarity=0.119 Sum_probs=165.1
Q ss_pred cccceeccccccchHHHh-hhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++.+..++. .+.++++|++|+|++|.+...... .+.++++|++|+|++|.++......+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~----- 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF----- 95 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc-----
Confidence 467888888877766554 466778888888888876544322 2456788888888888877544434433
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 323 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 323 (453)
+.+|++|++++|.++. ..+..++++++|++|+|++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus 96 ---l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 96 ---CTNLTELHLMSNSIQK--------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-----VQLENLQELLLSNNKIQA 159 (680)
T ss_dssp ---CTTCSEEECCSSCCCC--------CCSCTTTTCTTCCEEECCSSCCSCCCCCSS-----SCCTTCCEEECCSSCCCC
T ss_pred ---CCCCCEEECCCCccCc--------cChhHccccCCCCEEECCCCcccccCchhh-----cccccCCEEEccCCcccc
Confidence 5788888888888776 223456778888888888888776444332 346788888888888876
Q ss_pred cccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCC
Q 012930 324 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 324 ~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
..+ ..+... .+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++.....++.. + ..
T Consensus 160 ~~~--------~~~~~~-~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----l-~~ 221 (680)
T 1ziw_A 160 LKS--------EELDIF-ANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----L-AN 221 (680)
T ss_dssp BCH--------HHHGGG-TTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH----H-TT
T ss_pred cCH--------HHhhcc-ccccccEEECCCCcccc----cChhhhhhhhhhhhhhccccccChhhHHHHHHH----h-hh
Confidence 433 333322 45788888888888876 345567778888888888888877655555432 2 23
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCC-CCCcEEECcCCCCCcccc
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLSTLR-RPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~ 450 (453)
++|++|++++|.++... +..+..+. ++|++|++++|.+++.++
T Consensus 222 ~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp SCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred ccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCc
Confidence 78999999999887752 23333321 349999999999887554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=9.1e-19 Score=163.75 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=137.6
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccC
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 246 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~ 246 (453)
.+.++++++.+..++..+. .++++|++++|.+...... .+..+++|++|+|++|.++......+..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~-------- 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKE-------- 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSS--------
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcC--------
Confidence 4556666666655554332 5788888888886543221 2457788888888888877543333222
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+
T Consensus 84 l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQA--------LPIGVFDQLVNLAELRLDRNQLKSLPPRV-----FDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CTTCCEEECCSSCCCC--------CCTTTTTTCSSCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCEEECCCCcCCc--------CCHhHcccccCCCEEECCCCccCeeCHHH-----hCcCcCCCEEECCCCcCCccCH
Confidence 5778888888888876 22345567888888888888887643332 2446888888888888876322
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCc
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 406 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L 406 (453)
..+. .+++|++|++++|.++. ..+..+..+++|+.|++++|.|+. +|. ..+..+++|
T Consensus 151 --------~~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L 207 (270)
T 2o6q_A 151 --------GVFD---KLTSLKELRLYNNQLKR----VPEGAFDKLTELKTLKLDNNQLKR------VPE--GAFDSLEKL 207 (270)
T ss_dssp --------TTTT---TCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTC
T ss_pred --------hHcc---CCcccceeEecCCcCcE----eChhHhccCCCcCEEECCCCcCCc------CCH--HHhccccCC
Confidence 2233 67888888888888876 223356778888888888888876 332 346667888
Q ss_pred cEEEccCCCCCh
Q 012930 407 VELYLENCELSG 418 (453)
Q Consensus 407 ~~L~L~~n~l~~ 418 (453)
+.|++++|.+..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 888888887654
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.8e-18 Score=161.77 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=155.4
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
...+.++++++.++.... .-.+++++|+|++|.++...+..+.. +++|++|++++|.++.
T Consensus 16 ~~~~~l~~~~~~l~~ip~-------~~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~----- 75 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-------NIPADTKKLDLQSNKLSSLPSKAFHR--------LTKLRLLYLNDNKLQT----- 75 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-------CCCTTCSEEECCSSCCSCCCTTSSSS--------CTTCCEEECCSSCCSC-----
T ss_pred CCCCEEEccCCCCCccCC-------CCCCCCCEEECcCCCCCeeCHHHhcC--------CCCCCEEECCCCccCe-----
Confidence 457789999988664321 12257999999999998655444433 5899999999999987
Q ss_pred hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 347 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~ 347 (453)
.....+..+++|++|++++|.+....+.. +..+++|++|++++|.+++..+ ..+. .+++|+
T Consensus 76 ---i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~~~---~l~~L~ 136 (270)
T 2o6q_A 76 ---LPAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPP--------RVFD---SLTKLT 136 (270)
T ss_dssp ---CCTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSCCCCCCT--------TTTT---TCTTCC
T ss_pred ---eChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCccCeeCH--------HHhC---cCcCCC
Confidence 23344578999999999999998733322 3457899999999999987433 3333 779999
Q ss_pred EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHH
Q 012930 348 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 427 (453)
Q Consensus 348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 427 (453)
+|+|++|.++.. .+..+..+++|+.|++++|.++. ++. ..+..+++|++|++++|+|+... ...
T Consensus 137 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~~----~~~ 200 (270)
T 2o6q_A 137 YLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLKR------VPE--GAFDKLTELKTLKLDNNQLKRVP----EGA 200 (270)
T ss_dssp EEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred EEECCCCcCCcc----CHhHccCCcccceeEecCCcCcE------eCh--hHhccCCCcCEEECCCCcCCcCC----HHH
Confidence 999999999862 23357889999999999999987 432 44777899999999999998742 233
Q ss_pred HhcCCCCCcEEECcCCCCCc
Q 012930 428 LSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 428 l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+.. .++|+.|++++|.+..
T Consensus 201 ~~~-l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 201 FDS-LEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTT-CTTCCEEECCSSCBCC
T ss_pred hcc-ccCCCEEEecCCCeeC
Confidence 555 3569999999999754
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=2.6e-17 Score=166.12 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=169.7
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++....+. .+..+++|++|++++|.+..... ...+++|++|++++|.+++.. .+. .
T Consensus 178 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~--~l~----~--- 241 (466)
T 1o6v_A 178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG--TLA----S--- 241 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG--GGG----G---
T ss_pred CCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccch--hhh----c---
Confidence 5788888888776543 47788999999999999665432 457899999999999988642 222 2
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|+.|++++|.+.. ..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..
T Consensus 242 -l~~L~~L~l~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 242 -LTNLTDLDLANNQISN--------LAP--LSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp -CTTCSEEECCSSCCCC--------CGG--GTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCCG
T ss_pred -CCCCCEEECCCCcccc--------chh--hhcCCCCCEEECCCCccCcccc-------ccCCCccCeEEcCCCcccCch
Confidence 5899999999999987 111 7789999999999999987433 245799999999999998631
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
. ++ .+++|++|++++|++++. .+ +..+++|+.|++++|.+++ ++ .+..+++
T Consensus 304 ---------~-~~---~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~~n~l~~------~~----~l~~l~~ 354 (466)
T 1o6v_A 304 ---------P-IS---NLKNLTYLTLYFNNISDI----SP--VSSLTKLQRLFFYNNKVSD------VS----SLANLTN 354 (466)
T ss_dssp ---------G-GG---GCTTCSEEECCSSCCSCC----GG--GGGCTTCCEEECCSSCCCC------CG----GGTTCTT
T ss_pred ---------h-hc---CCCCCCEEECcCCcCCCc----hh--hccCccCCEeECCCCccCC------ch----hhccCCC
Confidence 2 34 678999999999999973 22 7789999999999999987 32 3677899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
|+.|++++|++++.. + +..+ +.|+.|++++|.+++
T Consensus 355 L~~L~l~~n~l~~~~----~--~~~l-~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLT----P--LANL-TRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCG----G--GTTC-TTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccc----h--hhcC-CCCCEEeccCCcccC
Confidence 999999999998852 2 5664 559999999998876
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.1e-17 Score=159.39 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=153.1
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.+++.++....++ .+..+++|+.|++++|.+..... +..+++|++|++++|.+++.. .+. .
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~~~----~--- 105 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--AIA----G--- 105 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--GGT----T---
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--hhc----C---
Confidence 5777788877766554 57788999999999999765432 568899999999999998642 222 2
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 106 -l~~L~~L~l~~n~l~~---------~~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~- 166 (308)
T 1h6u_A 106 -LQSIKTLDLTSTQITD---------VT-PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDL- 166 (308)
T ss_dssp -CTTCCEEECTTSCCCC---------CG-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred -CCCCCEEECCCCCCCC---------ch-hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcCCCC-
Confidence 5899999999999987 22 27889999999999999987433 34579999999999999862
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+. +. .+++|++|++++|++++ ++. +..+++|+.|++++|++++ ++ .+..+++
T Consensus 167 --------~~-l~---~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~------~~----~l~~l~~ 218 (308)
T 1h6u_A 167 --------TP-LA---NLSKLTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISD------VS----PLANTSN 218 (308)
T ss_dssp --------GG-GT---TCTTCCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCB------CG----GGTTCTT
T ss_pred --------hh-hc---CCCCCCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCc------cc----cccCCCC
Confidence 22 34 77899999999999987 333 7899999999999999998 43 2677899
Q ss_pred ccEEEccCCCCCh
Q 012930 406 LVELYLENCELSG 418 (453)
Q Consensus 406 L~~L~L~~n~l~~ 418 (453)
|++|++++|.++.
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999876
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=168.11 Aligned_cols=184 Identities=18% Similarity=0.097 Sum_probs=100.7
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++.+..++ +..+++|++|++++|.+... . +..+++|++|++++|.+++.. +. .
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l~---~~----~--- 125 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKLD---VS----Q--- 125 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCCC---CT----T---
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCeec---CC----C---
Confidence 4555555555554432 44556666666666654432 0 345556666666666555421 11 1
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+++|++|++++|.++.. .++.+++|++|++++|...+... +..+++|++|++++|.+++
T Consensus 126 -l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 126 -NPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp -CTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC-------CTTCTTCCEEECCSSCCCC--
T ss_pred -CCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc-------cccCCcCCEEECCCCccce--
Confidence 35566666666665551 13455666666666663222221 1234666666666666654
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
++ ++ .+++|+.|++++|++++. .+..+++|+.|++++|++++ +| +..+++
T Consensus 185 -------l~--l~---~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~------ip-----~~~l~~ 234 (457)
T 3bz5_A 185 -------LD--VS---QNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE------ID-----VTPLTQ 234 (457)
T ss_dssp -------CC--CT---TCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC------CC-----CTTCTT
T ss_pred -------ec--cc---cCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc------cC-----ccccCC
Confidence 11 22 456666777777766652 25566667777777776665 33 445566
Q ss_pred ccEEEccCCCCChh
Q 012930 406 LVELYLENCELSGR 419 (453)
Q Consensus 406 L~~L~L~~n~l~~~ 419 (453)
|++|++++|+++..
T Consensus 235 L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 235 LTYFDCSVNPLTEL 248 (457)
T ss_dssp CSEEECCSSCCSCC
T ss_pred CCEEEeeCCcCCCc
Confidence 77777777766653
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=4.1e-19 Score=183.78 Aligned_cols=229 Identities=18% Similarity=0.157 Sum_probs=160.9
Q ss_pred cceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhH--HHHHHHHhhccc
Q 012930 167 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR 244 (453)
Q Consensus 167 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~L~~~~ 244 (453)
++.+++.++....++. ..+++|+.|++++|....... ...+++|++|++++|.++... +..+..
T Consensus 306 L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------ 371 (570)
T 2z63_A 306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFG------ 371 (570)
T ss_dssp CSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHHT------
T ss_pred ccEEeeccCcccccCc--ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCccccccccccc------
Confidence 4455555554443332 244666666666665433221 146788888888888887543 334433
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+... +..+++|++|++++|.+.+.
T Consensus 372 --~~~L~~L~l~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 372 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESCTTSCT----TTTCTTCCEEECTTSCCEEC
T ss_pred --cCccCEEECCCCcccc---------ccccccccCCCCEEEccCCccccccchhh----hhcCCCCCEEeCcCCccccc
Confidence 5788888888888765 33337788899999999988765433111 24578899999999988764
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ ..+. .+++|++|++++|.+++. .+|..+..+++|+.|++++|.+++. .| ..+..++
T Consensus 437 ~~--------~~~~---~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~ 494 (570)
T 2z63_A 437 FN--------GIFN---GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLS 494 (570)
T ss_dssp CT--------TTTT---TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCT
T ss_pred ch--------hhhh---cCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC-----Ch---hhhhccc
Confidence 33 3334 678999999999998742 3667788899999999999999873 24 5577889
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
+|++|++++|+++.. .+..+.. .++|+.|++++|+++...+.
T Consensus 495 ~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSV----PDGIFDR-LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCC----CHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence 999999999999874 2344555 35699999999999887653
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=4.2e-18 Score=175.41 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=179.5
Q ss_pred cccceeccccccchHH-HhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcc
Q 012930 165 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
..++.++++++....+ +..+..+++|++|++++|.+...... .+..+++|++|++++|.+++..+..+..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGP----- 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCSCCHHHHTT-----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh----hccccccCCEEECCCCccCccCHHHhcc-----
Confidence 3688888888877665 35677889999999999997654322 2568899999999999999887776754
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHH-HHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
+.+|++|++++|.++..+ .+..+.++++|++|++++|.+.+..+ ..+ ..+++|++|++++|.++
T Consensus 97 ---l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 97 ---LSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----AGLTSLNELEIKALSLR 161 (549)
T ss_dssp ---CTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCC
T ss_pred ---CCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhh-----hcccccCeeeccCCccc
Confidence 689999999999988522 23456789999999999998433333 222 45789999999999998
Q ss_pred CcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHH-HhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcC
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 401 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~ 401 (453)
+..+ ..++ .+++|++|++++|.++. ++.. +..+++|+.|++++|.+++..+... ....
T Consensus 162 ~~~~--------~~l~---~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~ 220 (549)
T 2z81_A 162 NYQS--------QSLK---SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFSPL-----PVDE 220 (549)
T ss_dssp EECT--------TTTT---TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----SSCC
T ss_pred ccCh--------hhhh---ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccccc-----chhh
Confidence 7544 4444 67899999999998875 4443 4578999999999999876211000 1234
Q ss_pred CCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 402 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 402 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
.+++|++|++++|.+++.+...+...+.. ...|+.+++++|.+.+
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~-~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNG 265 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGG-CTTCCEEEEESCEEEC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhh-hccccccccccccccc
Confidence 56889999999999998877777776666 3568899988887654
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=5.6e-18 Score=175.75 Aligned_cols=227 Identities=19% Similarity=0.150 Sum_probs=143.4
Q ss_pred cCCceeeeehhhhc------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcC
Q 012930 151 CDYSKLSYHCQQFG------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFL 224 (453)
Q Consensus 151 ~~l~~l~l~~~~~~------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~ 224 (453)
.+++.|.++.+.+. ..++.|++++|.+..++. ..++|++|++++|.+.... ..+++|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC--------CCCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC--------CCCCCcCEEECC
Confidence 45555555544221 257777777777665554 5577888888887754421 145678888888
Q ss_pred CCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHH
Q 012930 225 HCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 304 (453)
Q Consensus 225 ~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L 304 (453)
+|+++.... ..++|++|++++|.++... . ..++|+.|++++|.++. .+
T Consensus 130 ~N~l~~lp~------------~l~~L~~L~Ls~N~l~~l~---------~---~~~~L~~L~L~~N~l~~-l~------- 177 (622)
T 3g06_A 130 GNQLTSLPV------------LPPGLQELSVSDNQLASLP---------A---LPSELCKLWAYNNQLTS-LP------- 177 (622)
T ss_dssp SSCCSCCCC------------CCTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSC-CC-------
T ss_pred CCCCCcCCC------------CCCCCCEEECcCCcCCCcC---------C---ccCCCCEEECCCCCCCC-Cc-------
Confidence 887764211 0367888888888776521 1 22455555555555544 22
Q ss_pred hhCCCCCCEEEcCCCCCCCccccc--------CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccE
Q 012930 305 LEASSSLSILDLSGNSIGGWLSKY--------DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI 376 (453)
Q Consensus 305 ~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 376 (453)
..+++|+.|++++|.+++..... ....+. .+. ..+++|++|++++|+|+. +| ..+++|+.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~--~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~ 245 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLP--ALPSGLKELIVSGNRLTS-----LP---VLPSELKE 245 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC--CCCTTCCEEECCSSCCSC-----CC---CCCTTCCE
T ss_pred -ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccC--CCCCCCCEEEccCCccCc-----CC---CCCCcCcE
Confidence 12355666666666655411000 000000 001 123678999999999886 44 46688999
Q ss_pred EeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 377 LDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 377 L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|++++|.|+. +| . .+++|+.|+|++|+|+. ++..+..+ ++|+.|+|++|.|++..+
T Consensus 246 L~Ls~N~L~~------lp---~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l-~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 246 LMVSGNRLTS------LP---M---LPSGLLSLSVYRNQLTR-----LPESLIHL-SSETTVNLEGNPLSERTL 301 (622)
T ss_dssp EECCSSCCSC------CC---C---CCTTCCEEECCSSCCCS-----CCGGGGGS-CTTCEEECCSCCCCHHHH
T ss_pred EECCCCCCCc------CC---c---ccccCcEEeCCCCCCCc-----CCHHHhhc-cccCEEEecCCCCCCcCH
Confidence 9999999986 65 2 45789999999999986 56677774 569999999999987654
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=1.8e-18 Score=187.14 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=66.3
Q ss_pred CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423 (453)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 423 (453)
++|+.|++++|.++. ..+..+..+++|+.|+|++|.|+.. .| .++..+++|++|+|++|.++..
T Consensus 266 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~---- 329 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYNKINKI-----AD---EAFYGLDNLQVLNLSYNLLGEL---- 329 (844)
T ss_dssp SCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESCCCCEE-----CT---TTTTTCSSCCEEEEESCCCSCC----
T ss_pred CCccEEECCCCcccc----cChhhhhcCCCCCEEECCCCcCCCC-----Ch---HHhcCCCCCCEEECCCCCCCcc----
Confidence 578888888888876 3455677888888999988888762 23 4567778899999999988763
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 424 LLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 424 l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
.+..+..+ ++|+.|++++|.|++..+
T Consensus 330 ~~~~~~~l-~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 330 YSSNFYGL-PKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CSCSCSSC-TTCCEEECCSCCCCCCCS
T ss_pred CHHHhcCC-CCCCEEECCCCCCCccCh
Confidence 24455553 458999999998876443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.1e-17 Score=154.69 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=143.9
Q ss_pred cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930 214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 293 (453)
Q Consensus 214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~ 293 (453)
.+++|++|++++|.++... .+.. +++|++|++++|.++. + ..+..+++|++|++++|.++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~l~~--------l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--GIQY--------LPNVRYLALGGNKLHD---------I-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--TGGG--------CTTCCEEECTTSCCCC---------C-GGGTTCTTCCEEECTTSCCC
T ss_pred cccceeeeeeCCCCccccc--cccc--------CCCCcEEECCCCCCCC---------c-hhhcCCCCCCEEECCCCccC
Confidence 4578999999999887532 2222 5899999999999887 2 26778999999999999998
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 373 (453)
+..+.. +..+++|++|++++|.+++..+ ..+. .+++|++|++++|+++. ..+..+..+++
T Consensus 99 ~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~ 158 (272)
T 3rfs_A 99 SLPNGV-----FDKLTNLKELVLVENQLQSLPD--------GVFD---KLTNLTYLNLAHNQLQS----LPKGVFDKLTN 158 (272)
T ss_dssp CCCTTT-----TTTCTTCCEEECTTSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTT
T ss_pred ccChhH-----hcCCcCCCEEECCCCcCCccCH--------HHhc---cCCCCCEEECCCCccCc----cCHHHhccCcc
Confidence 743332 2457999999999999986433 2334 67899999999999996 23445688999
Q ss_pred ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|+.|++++|.+++ ++. ..+..+++|++|++++|+++.. .+..+.. .++|+.|++++|.+....+
T Consensus 159 L~~L~l~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 159 LTELDLSYNQLQS------LPE--GVFDKLTQLKDLRLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCCcCc------cCH--HHhcCCccCCEEECCCCcCCcc----CHHHHhC-CcCCCEEEccCCCccccCc
Confidence 9999999999987 332 4467889999999999999874 2334555 3569999999999887654
No 84
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.69 E-value=3.7e-16 Score=136.53 Aligned_cols=136 Identities=13% Similarity=0.225 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCCCccEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930 269 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 347 (453)
Q Consensus 269 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~ 347 (453)
.+.+...+...++|++|+|++| .+.+.+...++++|..+ +.|+.|+|++|.|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig------------------------- 83 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS------------------------- 83 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB-------------------------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC-------------------------
Confidence 3467777778888888888885 88888888888887544 55555555555555
Q ss_pred EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC---CCChhhHHHH
Q 012930 348 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC---ELSGRGVSQL 424 (453)
Q Consensus 348 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n---~l~~~~~~~l 424 (453)
+.|++.+++++..+++|++|+|+.|.|++.|+.+++ +++..++.|++|+|++| .+++.|..++
T Consensus 84 ----------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 84 ----------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp ----------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred ----------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 444445555555555555555555555555555554 23444455555555433 4455555555
Q ss_pred HHHHhcCCCCCcEEECcCCCC
Q 012930 425 LDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 425 ~~~l~~~~~~L~~L~Ls~N~l 445 (453)
++++.. |++|+.|+++.|.+
T Consensus 150 a~aL~~-N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEE-NESLLRVGISFASM 169 (197)
T ss_dssp HHHHHH-CSSCCEEECCCCCH
T ss_pred HHHHHh-CCCcCeEeccCCCc
Confidence 555555 44555555554443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.7e-18 Score=159.97 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=134.7
Q ss_pred hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCC
Q 012930 184 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 263 (453)
Q Consensus 184 l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~ 263 (453)
+..++++++++++++.+...... -.++++.|+|++|.++...+..+.. +.+|++|++++|.++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-------~~~~l~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-------LPKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-------CCTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCC-------CCCCCCEEEcCCCcCCccCHHHhhc--------CCCCCEEECCCCccCcc
Confidence 34557788888887775543211 1257788888888887665555443 47788888888877651
Q ss_pred CchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCC
Q 012930 264 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 343 (453)
Q Consensus 264 ~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~ 343 (453)
+. ...+++|++|++++|.+.. .+..+ ..+++|++|++++|.+++..+ ..+. .+
T Consensus 71 ---------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~-----~~l~~L~~L~l~~N~l~~l~~--------~~~~---~l 123 (290)
T 1p9a_G 71 ---------QV-DGTLPVLGTLDLSHNQLQS-LPLLG-----QTLPALTVLDVSFNRLTSLPL--------GALR---GL 123 (290)
T ss_dssp ---------EC-CSCCTTCCEEECCSSCCSS-CCCCT-----TTCTTCCEEECCSSCCCCCCS--------STTT---TC
T ss_pred ---------cC-CCCCCcCCEEECCCCcCCc-Cchhh-----ccCCCCCEEECCCCcCcccCH--------HHHc---CC
Confidence 11 1467788888888887764 33222 346778888888888775332 2333 66
Q ss_pred CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHH
Q 012930 344 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 423 (453)
Q Consensus 344 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 423 (453)
++|++|+|++|+++. ..+..+..+++|+.|+|++|+|+. +|. ..+..+++|++|+|++|+|+.
T Consensus 124 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~l~~----- 186 (290)
T 1p9a_G 124 GELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT----- 186 (290)
T ss_dssp TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCEEECCCCCCCc----cChhhcccccCCCEEECCCCcCCc------cCH--HHhcCcCCCCEEECCCCcCCc-----
Confidence 788888888888775 223345677788888888888875 442 345667788888888888775
Q ss_pred HHHHHhcCCCCCcEEECcCCCCC
Q 012930 424 LLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 424 l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
++..+.. ..+|+.|+|++|++.
T Consensus 187 ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 187 IPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTT-TCCCSEEECCSCCBC
T ss_pred cChhhcc-cccCCeEEeCCCCcc
Confidence 4555555 345888888888764
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.4e-17 Score=165.74 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=105.6
Q ss_pred cCCceeeeehhhhc-------cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEc
Q 012930 151 CDYSKLSYHCQQFG-------HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF 223 (453)
Q Consensus 151 ~~l~~l~l~~~~~~-------~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L 223 (453)
.+++.+.++.+.+. ..++.|+++++.+..++ +..+++|++|++++|.+... + +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEEC
Confidence 45555555544221 14666777766665542 55667777777777765442 1 446667777777
Q ss_pred CCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHH
Q 012930 224 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 303 (453)
Q Consensus 224 ~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 303 (453)
++|.+++.. +.. +++|++|++++|.... .+ .+..+++|++|++++|++++ .+
T Consensus 135 ~~N~l~~l~---l~~--------l~~L~~L~l~~n~~~~--------~~--~~~~l~~L~~L~ls~n~l~~-l~------ 186 (457)
T 3bz5_A 135 ARNTLTEID---VSH--------NTQLTELDCHLNKKIT--------KL--DVTPQTQLTTLDCSFNKITE-LD------ 186 (457)
T ss_dssp TTSCCSCCC---CTT--------CTTCCEEECTTCSCCC--------CC--CCTTCTTCCEEECCSSCCCC-CC------
T ss_pred CCCccceec---ccc--------CCcCCEEECCCCCccc--------cc--ccccCCcCCEEECCCCccce-ec------
Confidence 777666531 111 4667777777774333 12 24456777777777777665 22
Q ss_pred HhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC
Q 012930 304 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 383 (453)
Q Consensus 304 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 383 (453)
+..+++|+.|++++|.+++. . +..+++|++|++++|++++ +| +..+++|+.|++++|+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~-----------~---l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL-----------D---LNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-----------C---CTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred -cccCCCCCEEECcCCcCCee-----------c---cccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCc
Confidence 23456777777777776651 1 2255677777777777765 33 5666777777777777
Q ss_pred CCh
Q 012930 384 IED 386 (453)
Q Consensus 384 i~~ 386 (453)
+++
T Consensus 245 l~~ 247 (457)
T 3bz5_A 245 LTE 247 (457)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=3.4e-18 Score=184.98 Aligned_cols=87 Identities=24% Similarity=0.204 Sum_probs=42.5
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 388 (453)
++|+.|++++|.+.+..+ .. +..+++|++|+|++|+++. ..+.++..+++|+.|+|++|.+++.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~--------~~---~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~- 329 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNS--------RV---FETLKDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNLLGEL- 329 (844)
T ss_dssp SCCCEEECTTCCCCEECS--------CC---SSSCCCCCEEEEESCCCCE----ECTTTTTTCSSCCEEEEESCCCSCC-
T ss_pred CCccEEECCCCcccccCh--------hh---hhcCCCCCEEECCCCcCCC----CChHHhcCCCCCCEEECCCCCCCcc-
Confidence 456666666665554222 11 2244555555555555554 2233445555555555555555431
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 389 IRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
.| ..+..+++|++|++++|.++.
T Consensus 330 ----~~---~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 330 ----YS---SNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp ----CS---CSCSSCTTCCEEECCSCCCCC
T ss_pred ----CH---HHhcCCCCCCEEECCCCCCCc
Confidence 12 334444555555555555544
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=3.6e-17 Score=169.04 Aligned_cols=159 Identities=24% Similarity=0.272 Sum_probs=120.8
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+++|++|++++|.+++ ..+..+..+++|++|+|++|++.+ ..+.. +..+++|++|++++|.+++.
T Consensus 352 l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVALM-----TKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT-----TTTCTTCCEEECTTSCCBSC
T ss_pred CCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCcccchhh-----hcCCCCCCEEECCCCcCCCc
Confidence 5788999999998887 566677889999999999999886 22322 24578999999999998864
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.+ . ..+..+++|++|++++|++++. ++..+. ++|+.|++++|+|+. +| ..+..++
T Consensus 419 ~~--------~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~------ip---~~~~~l~ 473 (562)
T 3a79_B 419 AY--------D--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS------IP---KDVTHLQ 473 (562)
T ss_dssp CS--------S--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC------CC---TTTTSSC
T ss_pred cC--------h--hhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc------cC---hhhcCCC
Confidence 33 1 1233678999999999999862 333222 689999999999986 66 4455789
Q ss_pred CccEEEccCCCCChhhHHHHHHH-HhcCCCCCcEEECcCCCCCccc
Q 012930 405 PLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+|++|+|++|+|+. ++.. +.. .++|+.|++++|++....
T Consensus 474 ~L~~L~L~~N~l~~-----l~~~~~~~-l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 474 ALQELNVASNQLKS-----VPDGVFDR-LTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCSEEECCSSCCCC-----CCTTSTTT-CTTCCCEECCSCCBCCCH
T ss_pred CCCEEECCCCCCCC-----CCHHHHhc-CCCCCEEEecCCCcCCCc
Confidence 99999999999986 3444 555 356999999999987643
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=3.5e-17 Score=151.22 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=128.3
Q ss_pred CccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhh
Q 012930 189 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 268 (453)
Q Consensus 189 ~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i 268 (453)
..++++++++.+...... -.+++++|+|++|.++...+..+.. +.+|++|++++|.++.
T Consensus 15 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-------IPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQT------ 73 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-------CCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCC------
T ss_pred CCeEEecCCCCccccCCC-------CCCCCCEEEccCCCcCccCHhHhcC--------cccCCEEECCCCcCCc------
Confidence 445666666654432211 1246777888888777655544433 4778888888888776
Q ss_pred HHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccE
Q 012930 269 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 348 (453)
Q Consensus 269 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~ 348 (453)
..+..+..+++|++|+|++|.+++..+.. +..+++|++|+|++|.+++..+ ..+. .+++|++
T Consensus 74 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~ 135 (251)
T 3m19_A 74 --LSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPS--------GVFD---RLTKLKE 135 (251)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCE
T ss_pred --cCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcCh--------hHhc---cCCcccE
Confidence 33445667888888888888887633322 2446888899999888886322 2233 6788889
Q ss_pred EEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHH
Q 012930 349 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLD 426 (453)
Q Consensus 349 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~ 426 (453)
|+|++|+|+. ..+..+..+++|+.|+|++|+|+. ++. ..+..+++|++|++++|.++.. ....+..
T Consensus 136 L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~ 203 (251)
T 3m19_A 136 LRLNTNQLQS----IPAGAFDKLTNLQTLSLSTNQLQS------VPH--GAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203 (251)
T ss_dssp EECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSCCBCTTSTTHHHHHH
T ss_pred EECcCCcCCc----cCHHHcCcCcCCCEEECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCceeCCccccHHHHH
Confidence 9999998886 223367788889999999998876 332 4567778899999999988664 3334455
Q ss_pred HHhc
Q 012930 427 TLST 430 (453)
Q Consensus 427 ~l~~ 430 (453)
.+..
T Consensus 204 ~~~~ 207 (251)
T 3m19_A 204 WIRE 207 (251)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 90
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.66 E-value=2.2e-16 Score=138.65 Aligned_cols=140 Identities=13% Similarity=0.063 Sum_probs=102.1
Q ss_pred HHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccE
Q 012930 206 ALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS 284 (453)
Q Consensus 206 ~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~ 284 (453)
..+.......++|++|+|++| .|++.+...+++.+ ..+++|++
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L------------------------------------~~~~~L~~ 69 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL------------------------------------KTNTYVKK 69 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH------------------------------------TTCCSCCE
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH------------------------------------HhCCCcCE
Confidence 334444556666777777776 67766666665543 44566777
Q ss_pred EEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEe--cCCCCChhhHH
Q 012930 285 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RGNNLCKADAR 362 (453)
Q Consensus 285 L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L--~~n~l~~~~~~ 362 (453)
|+|++|.+++.+...+++++..+ ++|++|+|++|.|++.+ +..+..++. ..++|++|+| ++|.|++.|+.
T Consensus 70 L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~~g----~~~l~~~L~---~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 70 FSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSG----ILALVEALQ---SNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHH----HHHHHHGGG---GCSSCCEEECCCCSSCCCHHHHH
T ss_pred EECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCHHH----HHHHHHHHH---hCCCceEEEecCCCCCCCHHHHH
Confidence 77777777777777777776554 66777777777777532 223444455 4578999999 88999999999
Q ss_pred HHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930 363 DLGSALVHIPNLEILDISDNTIEDDGI 389 (453)
Q Consensus 363 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~ 389 (453)
.+...+..+++|++|+|++|.|++.|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~~~~~ 168 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQGPRLR 168 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHHHHHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCChHHH
Confidence 999999999999999999999998873
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3e-17 Score=151.70 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=141.2
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 295 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~ 295 (453)
...++++++++.++... ..+ ...++.|++++|.+.. ..+..+.++++|++|+|++|.+.+.
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~----------~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI----------PADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC----------CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCeEEecCCCCccccC-CCC----------CCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCcc
Confidence 45788999999887432 111 3679999999999988 3445677899999999999999874
Q ss_pred HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930 296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 375 (453)
Q Consensus 296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 375 (453)
.+..+ ..+++|++|++++|.+++..+ ..+. .+++|++|+|++|+|+. ..+..+..+++|+
T Consensus 75 ~~~~~-----~~l~~L~~L~L~~n~l~~~~~--------~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~ 134 (251)
T 3m19_A 75 SAGVF-----DDLTELGTLGLANNQLASLPL--------GVFD---HLTQLDKLYLGGNQLKS----LPSGVFDRLTKLK 134 (251)
T ss_dssp CTTTT-----TTCTTCCEEECTTSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCC
T ss_pred CHhHh-----ccCCcCCEEECCCCcccccCh--------hHhc---ccCCCCEEEcCCCcCCC----cChhHhccCCccc
Confidence 44333 457999999999999986433 3333 67899999999999996 2234567899999
Q ss_pred EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
.|+|++|.|+. +|. ..+..+++|++|+|++|+|+.. .+..+.. .++|+.|++++|.+...
T Consensus 135 ~L~Ls~N~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 135 ELRLNTNQLQS------IPA--GAFDKLTNLQTLSLSTNQLQSV----PHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred EEECcCCcCCc------cCH--HHcCcCcCCCEEECCCCcCCcc----CHHHHhC-CCCCCEEEeeCCceeCC
Confidence 99999999987 442 4577889999999999999874 2335555 35699999999999765
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2.7e-16 Score=148.53 Aligned_cols=171 Identities=22% Similarity=0.188 Sum_probs=110.1
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
.+++|+.|++++|.+..... +..+++|++|++++|.+++..+ +.. +++|++|++++|.++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~------~~~l~~L~~L~L~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~--- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTDIKP--LAN--------LKNLGWLFLDENKVKD--- 104 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC---
T ss_pred hcCcccEEEccCCCcccChh------HhcCCCCCEEEccCCccCCCcc--ccc--------CCCCCEEECCCCcCCC---
Confidence 34677778887777543311 4566777778887777765443 221 4677777777777765
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
++ .+..+++|++|++++|.+.+. .. +..+++|+.|++++|.+++. ..+. .+++
T Consensus 105 ------~~-~l~~l~~L~~L~L~~n~i~~~--~~-----l~~l~~L~~L~l~~n~l~~~----------~~l~---~l~~ 157 (291)
T 1h6t_A 105 ------LS-SLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK 157 (291)
T ss_dssp ------GG-GGTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTT
T ss_pred ------Ch-hhccCCCCCEEECCCCcCCCC--hh-----hcCCCCCCEEEccCCcCCcc----------hhhc---cCCC
Confidence 21 266777777777777777652 11 23457777777777777652 2233 5567
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
|++|++++|.+++ ++. +..+++|+.|++++|.|++ ++ .+..+++|+.|++++|.++.
T Consensus 158 L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~L~~N~i~~------l~----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCcccc-----chh-hcCCCccCEEECCCCcCCC------Ch----hhccCCCCCEEECcCCcccC
Confidence 7777777777775 222 6677777777777777776 33 25566777777777776655
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=4.6e-16 Score=138.16 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=117.1
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
.+|+.|++++|.++. ++ .+..+++|++|++++|.+... .. +..+++|++|++++|.+++..+
T Consensus 44 ~~L~~L~l~~n~i~~---------l~-~l~~l~~L~~L~l~~n~~~~~--~~-----l~~l~~L~~L~l~~n~l~~~~~- 105 (197)
T 4ezg_A 44 NSLTYITLANINVTD---------LT-GIEYAHNIKDLTINNIHATNY--NP-----ISGLSNLERLRIMGKDVTSDKI- 105 (197)
T ss_dssp HTCCEEEEESSCCSC---------CT-TGGGCTTCSEEEEESCCCSCC--GG-----GTTCTTCCEEEEECTTCBGGGS-
T ss_pred CCccEEeccCCCccC---------hH-HHhcCCCCCEEEccCCCCCcc--hh-----hhcCCCCCEEEeECCccCcccC-
Confidence 678889999888876 33 467889999999999977652 12 2457899999999999986433
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCCCCc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPL 406 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~~~L 406 (453)
..+..+++|++|++++|.+++. .+..+..+++|+.|++++|. +++ +| .+..+++|
T Consensus 106 ----------~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~------~~----~l~~l~~L 161 (197)
T 4ezg_A 106 ----------PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD------IM----PLKTLPEL 161 (197)
T ss_dssp ----------CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC------CG----GGGGCSSC
T ss_pred ----------hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc------cH----hhcCCCCC
Confidence 3344788999999999999973 56778899999999999998 887 44 25667899
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 407 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 407 ~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
++|++++|++++. . .+..+ ++|++|++++|+|++
T Consensus 162 ~~L~l~~n~i~~~-----~-~l~~l-~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 KSLNIQFDGVHDY-----R-GIEDF-PKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECTTBCCCCC-----T-TGGGC-SSCCEEEECBC----
T ss_pred CEEECCCCCCcCh-----H-HhccC-CCCCEEEeeCcccCC
Confidence 9999999999883 2 56664 559999999999976
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=1e-17 Score=173.31 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=169.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.+++.++....++..+... +|++|++++|.+... + ...+++|++|++++|.+....+. .
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~------~~~l~~L~~L~l~~n~~~~~~~~----------~ 344 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-P------TLKLKSLKRLTFTSNKGGNAFSE----------V 344 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-C------BCBCSSCCEEEEESCBSCCBCCC----------C
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCccccc-C------cccccccCEEeCcCCcccccccc----------c
Confidence 5777778777777666666666 888888888886521 1 13678888999988876643322 1
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
.+++|++|++++|.++..++ .+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCT
T ss_pred cCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcccccc
Confidence 15889999999998876211 134566889999999999988763222 245789999999999887532
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
+ . ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+++.. +| ..+..+++
T Consensus 413 ~--------~--~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~p---~~~~~l~~ 471 (570)
T 2z63_A 413 E--------F--SVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENF----LP---DIFTELRN 471 (570)
T ss_dssp T--------S--CTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGGGE----EC---SCCTTCTT
T ss_pred c--------h--hhhhcCCCCCEEeCcCCcccc----cchhhhhcCCcCcEEECcCCcCcccc----ch---hhhhcccC
Confidence 2 1 123377899999999999887 35667889999999999999987421 44 55788899
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 406 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 406 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
|++|++++|+++.. .+..+.. .++|++|++++|.|++..+
T Consensus 472 L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 472 LTFLDLSQCQLEQL----SPTAFNS-LSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEEECTTSCCCEE----CTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCccccC----Chhhhhc-ccCCCEEeCCCCcCCCCCH
Confidence 99999999999985 3556666 3569999999999988654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=3.7e-16 Score=147.63 Aligned_cols=170 Identities=20% Similarity=0.250 Sum_probs=99.8
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 295 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~ 295 (453)
++|++|++++|.+.... .+.. +++|++|++++|.++. +.. +..+++|++|++++|.+.+
T Consensus 46 ~~L~~L~l~~~~i~~~~--~~~~--------l~~L~~L~L~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~~- 104 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ--GIQY--------LPNVTKLFLNGNKLTD---------IKP-LANLKNLGWLFLDENKVKD- 104 (291)
T ss_dssp HTCCEEECTTSCCCCCT--TGGG--------CTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCC-
T ss_pred CcccEEEccCCCcccCh--hHhc--------CCCCCEEEccCCccCC---------Ccc-cccCCCCCEEECCCCcCCC-
Confidence 46667777777665431 1111 4667777777776665 111 5566777777777776665
Q ss_pred HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930 296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 375 (453)
Q Consensus 296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 375 (453)
.+. +..+++|++|++++|.+++. ..+. .+++|++|++++|++++ + ..+..+++|+
T Consensus 105 ~~~------l~~l~~L~~L~L~~n~i~~~----------~~l~---~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~ 159 (291)
T 1h6t_A 105 LSS------LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTKLD 159 (291)
T ss_dssp GGG------GTTCTTCCEEECTTSCCCCC----------GGGG---GCTTCCEEECCSSCCCC-----C-GGGGGCTTCS
T ss_pred Chh------hccCCCCCEEECCCCcCCCC----------hhhc---CCCCCCEEEccCCcCCc-----c-hhhccCCCCC
Confidence 211 23456677777777766641 1233 45667777777776665 2 3456666777
Q ss_pred EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 376 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
.|++++|.|++ +++ +..+++|++|++++|.|++. + .+.. .++|+.|++++|.+++.
T Consensus 160 ~L~L~~N~l~~------~~~----l~~l~~L~~L~L~~N~i~~l-----~-~l~~-l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 160 TLSLEDNQISD------IVP----LAGLTKLQNLYLSKNHISDL-----R-ALAG-LKNLDVLELFSQECLNK 215 (291)
T ss_dssp EEECCSSCCCC------CGG----GTTCTTCCEEECCSSCCCBC-----G-GGTT-CTTCSEEEEEEEEEECC
T ss_pred EEEccCCcccc------chh----hcCCCccCEEECCCCcCCCC-----h-hhcc-CCCCCEEECcCCcccCC
Confidence 77777777665 321 45556777777777776662 2 2444 24477777777666543
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.7e-17 Score=152.03 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=136.5
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCC-CChhHHHHHHHHhhccccCCcceeEEEccC-CCCCCCCc
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCP 265 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~l~~~~~ 265 (453)
.++++|++++|.+...... .+.++++|++|++++|. ++......+.. +++|++|++++ |.++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~--------l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYN--------LSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp TTCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEES--------CTTCCEEEEEEETTCCE---
T ss_pred CcccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCC--------CcCCcEEECCCCCCeeE---
Confidence 4788888888886544322 24577888888888886 76544433322 57888888887 88776
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCC---EEEcCCC-CCCCcccccCcCchHHhhcCCC
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGK 341 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~ 341 (453)
..+..+..+++|++|++++|.+.+ .+. +..+++|+ +|++++| .+++..+ ..+ .
T Consensus 96 -----i~~~~f~~l~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~--------~~~---~ 152 (239)
T 2xwt_C 96 -----IDPDALKELPLLKFLGIFNTGLKM-FPD------LTKVYSTDIFFILEITDNPYMTSIPV--------NAF---Q 152 (239)
T ss_dssp -----ECTTSEECCTTCCEEEEEEECCCS-CCC------CTTCCBCCSEEEEEEESCTTCCEECT--------TTT---T
T ss_pred -----cCHHHhCCCCCCCEEeCCCCCCcc-ccc------cccccccccccEEECCCCcchhhcCc--------ccc---c
Confidence 223456778889999999988876 332 23467777 9999998 7775322 223 3
Q ss_pred CCCccc-EEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCC-CChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCCh
Q 012930 342 SLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERC-NPLVELYLENCELSG 418 (453)
Q Consensus 342 ~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~ 418 (453)
.+++|+ +|++++|+++. ++......++|+.|++++|+ ++. +|. ..+..+ ++|++|++++|+++.
T Consensus 153 ~l~~L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~------i~~--~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTV------IDK--DAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTBSSEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCE------ECT--TTTTTCSBCCSEEECTTCCCCC
T ss_pred chhcceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCccc------CCH--HHhhccccCCcEEECCCCcccc
Confidence 678888 99999998885 44433334789999999994 876 432 446677 889999999998876
Q ss_pred hhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 419 RGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
. +.. . -+.|+.|+++++.
T Consensus 220 l-----~~~--~-~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 L-----PSK--G-LEHLKELIARNTW 237 (239)
T ss_dssp C-----CCT--T-CTTCSEEECTTC-
T ss_pred C-----Chh--H-hccCceeeccCcc
Confidence 3 222 2 2348888888763
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.9e-16 Score=137.98 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=77.0
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
+++|++|++++|.++. + ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+
T Consensus 65 l~~L~~L~l~~n~~~~---------~-~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 65 AHNIKDLTINNIHATN---------Y-NPISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp CTTCSEEEEESCCCSC---------C-GGGTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGGGH
T ss_pred CCCCCEEEccCCCCCc---------c-hhhhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcHhH
Confidence 3556666666665443 1 245566677777777776665444433 335667777777777665322
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCC-CChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
..+. .+++|++|++++|. +++ ++ .+..+++|+.|++++|.+++ ++ .+..+++
T Consensus 130 --------~~l~---~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~------~~----~l~~l~~ 182 (197)
T 4ezg_A 130 --------TKIN---TLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHD------YR----GIEDFPK 182 (197)
T ss_dssp --------HHHT---TCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCC------CT----TGGGCSS
T ss_pred --------HHHh---hCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcC------hH----HhccCCC
Confidence 4444 55677777777776 664 33 46667777777777777766 32 2445567
Q ss_pred ccEEEccCCCCCh
Q 012930 406 LVELYLENCELSG 418 (453)
Q Consensus 406 L~~L~L~~n~l~~ 418 (453)
|++|++++|+|++
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 7777777777654
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=4.8e-16 Score=161.28 Aligned_cols=197 Identities=18% Similarity=0.075 Sum_probs=133.3
Q ss_pred cccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 165 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 165 ~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
..++.|++++|.+..++. ..++|++|+|++|.+.... ..+++|++|+|++|.++....
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~~----------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP--------VLPPGLLELSIFSNPLTHLPA----------- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC--------CCCTTCCEEEECSCCCCCCCC-----------
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC--------CCCCCCCEEECcCCcCCCCCC-----------
Confidence 478999999998876665 5689999999999865321 267899999999998875322
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
.+.+|+.|++++|.++.. +. .+++|++|+|++|.+++ .+. ...+|+.|++++|.+++
T Consensus 119 -~l~~L~~L~L~~N~l~~l---------p~---~l~~L~~L~Ls~N~l~~-l~~--------~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSL---------PV---LPPGLQELSVSDNQLAS-LPA--------LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp -CCTTCCEEECCSSCCSCC---------CC---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-
T ss_pred -CCCCcCEEECCCCCCCcC---------CC---CCCCCCEEECcCCcCCC-cCC--------ccCCCCEEECCCCCCCC-
Confidence 157899999999998762 21 24889999999999876 221 25789999999999885
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHH---h--------------CCCCccEEeCCCCCCChh
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL---V--------------HIPNLEILDISDNTIEDD 387 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~--------------~~~~L~~L~Ls~N~i~~~ 387 (453)
+| . .+++|+.|++++|.++. ++..+ . ..++|+.|++++|.|+.
T Consensus 176 --------l~---~---~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 176 --------LP---M---LPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp --------CC---C---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-
T ss_pred --------Cc---c---cCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-
Confidence 22 1 34677788888887765 22211 0 11445555555555554
Q ss_pred HHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCC
Q 012930 388 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 446 (453)
Q Consensus 388 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 446 (453)
+| ..+++|++|+|++|.|+. ++. . .++|++|+|++|.|+
T Consensus 236 -----lp------~~l~~L~~L~Ls~N~L~~-----lp~---~-~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 236 -----LP------VLPSELKELMVSGNRLTS-----LPM---L-PSGLLSLSVYRNQLT 274 (622)
T ss_dssp -----CC------CCCTTCCEEECCSSCCSC-----CCC---C-CTTCCEEECCSSCCC
T ss_pred -----CC------CCCCcCcEEECCCCCCCc-----CCc---c-cccCcEEeCCCCCCC
Confidence 32 223566666666666665 222 1 344777777777766
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=6.6e-17 Score=148.15 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=137.1
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCC-CCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCC
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD 293 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~ 293 (453)
++|++|++++|.++......+.. +++|++|++++|. ++. ..+..+.++++|++|++++ |.+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQ--------LESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTT--------CTTCCEEEEECCSSCCE--------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceEECHHHccC--------CCCCcEEeCCCCCCcce--------eCHhHcCCCcCCcEEECCCCCCee
Confidence 47999999999998766555543 5899999999997 766 2234678899999999998 9988
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc---EEEecCC-CCChhhHHHHHHHHh
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR---LLNLRGN-NLCKADARDLGSALV 369 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~---~L~L~~n-~l~~~~~~~l~~~l~ 369 (453)
...+.. +..+++|++|++++|.+++ +|. +. .+++|+ +|++++| .++. ..+..+.
T Consensus 95 ~i~~~~-----f~~l~~L~~L~l~~n~l~~---------lp~-~~---~l~~L~~L~~L~l~~N~~l~~----i~~~~~~ 152 (239)
T 2xwt_C 95 YIDPDA-----LKELPLLKFLGIFNTGLKM---------FPD-LT---KVYSTDIFFILEITDNPYMTS----IPVNAFQ 152 (239)
T ss_dssp EECTTS-----EECCTTCCEEEEEEECCCS---------CCC-CT---TCCBCCSEEEEEEESCTTCCE----ECTTTTT
T ss_pred EcCHHH-----hCCCCCCCEEeCCCCCCcc---------ccc-cc---cccccccccEEECCCCcchhh----cCccccc
Confidence 633222 3457899999999999986 223 34 455565 9999999 9986 2234578
Q ss_pred CCCCcc-EEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCC-CChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 370 HIPNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 370 ~~~~L~-~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
.+++|+ .|++++|.++. +|. ..+.. ++|++|++++|+ ++... ...+..+.++|+.|++++|.|++
T Consensus 153 ~l~~L~~~L~l~~n~l~~------i~~--~~~~~-~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTS------VQG--YAFNG-TKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTBSSEEEEECCSCCCCE------ECT--TTTTT-CEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCC
T ss_pred chhcceeEEEcCCCCCcc------cCH--hhcCC-CCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCcccc
Confidence 899999 99999999986 552 23344 799999999995 88741 23444421569999999999985
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=6.8e-16 Score=158.30 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=135.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++.+..++..+. ++|+.|+|++|.+.... ..+++|++|+|++|.|+.. +. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p~-l--------- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-PE-L--------- 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-CC-C---------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-ch-h---------
Confidence 57777777777666555442 78999999999876321 3568999999999988862 22 2
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
..+|+.|++++|.++. ++. .+++|+.|+|++|.+++ .+. .+++|++|+|++|.+++ .
T Consensus 119 -~~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 119 -PASLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp -CTTCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-C
T ss_pred -hcCCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-c
Confidence 2479999999999887 222 57899999999999876 333 25789999999999886 2
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCc-------cEEeCCCCCCChhHHHhHHHHHHh
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL-------EILDISDNTIEDDGIRSLIPYFVQ 398 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~N~i~~~g~~~l~~~l~~ 398 (453)
+ . +. ++|++|+|++|+|+. +|. +.. +| +.|+|++|.|+. +| .
T Consensus 176 p--------~-l~-----~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------lp---~ 224 (571)
T 3cvr_A 176 P--------E-LP-----ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH------IP---E 224 (571)
T ss_dssp C--------C-CC-----TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC------CC---G
T ss_pred c--------h-hh-----CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee------cC---H
Confidence 2 3 22 789999999999985 554 332 56 999999999986 66 4
Q ss_pred hcCCCCCccEEEccCCCCChhhHHHH
Q 012930 399 ASERCNPLVELYLENCELSGRGVSQL 424 (453)
Q Consensus 399 ~l~~~~~L~~L~L~~n~l~~~~~~~l 424 (453)
.+..+++|+.|+|++|.|+......+
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 45568899999999999988644333
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1.5e-15 Score=152.43 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=48.8
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.++++++....++.. ..+|++|++++|.+... + .+..+++|++|++++|.+++.. ..
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l-~-----~~~~l~~L~~L~l~~N~l~~l~---------~~-- 213 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-P-----ELQNLPFLTAIYADNNSLKKLP---------DL-- 213 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-C-----CCTTCTTCCEEECCSSCCSSCC---------CC--
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCcC-c-----cccCCCCCCEEECCCCcCCcCC---------CC--
Confidence 456666666655443321 24666666666664432 1 1345566666666666555310 00
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCCh
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 294 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~ 294 (453)
..+|++|++++|.+.. ++ .+..+++|++|++++|++.+
T Consensus 214 -~~~L~~L~l~~n~l~~---------lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 214 -PLSLESIVAGNNILEE---------LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp -CTTCCEEECCSSCCSS---------CC-CCTTCTTCCEEECCSSCCSS
T ss_pred -cCcccEEECcCCcCCc---------cc-ccCCCCCCCEEECCCCcCCc
Confidence 2345555665555543 22 14455555555555555543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=3e-16 Score=140.55 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=86.9
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
.+|++|++++|.++. .....+..+++|++|++++|++.+..+.. +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~- 93 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLNLSTNQLQSLPN- 93 (208)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCcEEEcCCCccCc--------CChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEECCCCcCCccCH-
Confidence 445666666666554 22233455666666666666665422111 2335667777777776664222
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+. .+++|++|++++|+++. ..+..+..+++|+.|++++|.+++ ++. ..+..+++|+
T Consensus 94 -------~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~ 151 (208)
T 2o6s_A 94 -------GVFD---KLTQLKELALNTNQLQS----LPDGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQ 151 (208)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred -------hHhc---CccCCCEEEcCCCcCcc----cCHhHhccCCcCCEEECCCCccce------eCH--HHhccCCCcc
Confidence 1222 45667777777776664 122335566677777777776664 221 2345566777
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 012930 408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 451 (453)
Q Consensus 408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 451 (453)
+|++++|.++.. .+.|+.|+++.|.+++.+|.
T Consensus 152 ~L~l~~N~~~~~------------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 152 YIWLHDNPWDCT------------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp EEECCSCCBCCC------------TTTTHHHHHHHHHCTTTBBC
T ss_pred EEEecCCCeecC------------CCCHHHHHHHHHhCCceeec
Confidence 777777765542 22366666666666665553
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=3.1e-15 Score=154.91 Aligned_cols=171 Identities=22% Similarity=0.182 Sum_probs=107.9
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
.+.+|+.|++++|.+.... .+..+++|++|+|++|.|++..+ +.. +++|+.|+|++|.+..
T Consensus 41 ~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~--------l~~L~~L~Ls~N~l~~--- 101 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTN--------LKNLGWLFLDENKIKD--- 101 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGG--------CTTCCEEECCSSCCCC---
T ss_pred cCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hcc--------CCCCCEEECcCCCCCC---
Confidence 3456666777766644321 13466777777777777765443 221 4677777777777665
Q ss_pred hhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCc
Q 012930 266 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 345 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~ 345 (453)
++ .+..+++|++|+|++|.+.+. + . +..+++|+.|+|++|.+++. ..+. .+++
T Consensus 102 ------l~-~l~~l~~L~~L~Ls~N~l~~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~ 154 (605)
T 1m9s_A 102 ------LS-SLKDLKKLKSLSLEHNGISDI-N-G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK 154 (605)
T ss_dssp ------CT-TSTTCTTCCEEECTTSCCCCC-G-G-----GGGCTTCSEEECCSSCCCCC----------GGGG---SCTT
T ss_pred ------Ch-hhccCCCCCEEEecCCCCCCC-c-c-----ccCCCccCEEECCCCccCCc----------hhhc---ccCC
Confidence 11 456677777777777777652 1 1 23467777777777777652 2333 5667
Q ss_pred ccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 346 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 346 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
|+.|+|++|.|++ ++. +..+++|+.|+|++|.|++ ++ .+..+++|+.|+|++|.++.
T Consensus 155 L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~i~~------l~----~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 155 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEECCSEEEEC
T ss_pred CCEEECcCCcCCC-----chh-hccCCCCCEEECcCCCCCC------Ch----HHccCCCCCEEEccCCcCcC
Confidence 7777777777775 222 6677777777777777776 32 25566777777777776655
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.3e-15 Score=155.96 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=139.8
Q ss_pred cCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCC
Q 012930 214 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 293 (453)
Q Consensus 214 ~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~ 293 (453)
.+++|+.|++++|.+.... .+. . +++|+.|+|++|.+.. ++. +..+++|+.|+|++|.+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~----~----l~~L~~L~Ls~N~l~~---------~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQ----Y----LPNVTKLFLNGNKLTD---------IKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGG----G----CTTCCEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCCCCCCh--HHc----c----CCCCCEEEeeCCCCCC---------Chh-hccCCCCCEEECcCCCCC
Confidence 4578999999999887642 222 2 6899999999999987 222 789999999999999998
Q ss_pred hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC
Q 012930 294 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 373 (453)
Q Consensus 294 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 373 (453)
+ .+ . +..+++|+.|+|++|.+.+. ..+. .+++|+.|+|++|.+++ + ..+..+++
T Consensus 101 ~-l~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~ 154 (605)
T 1m9s_A 101 D-LS-S-----LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTK 154 (605)
T ss_dssp C-CT-T-----STTCTTCCEEECTTSCCCCC----------GGGG---GCTTCSEEECCSSCCCC-----C-GGGGSCTT
T ss_pred C-Ch-h-----hccCCCCCEEEecCCCCCCC----------cccc---CCCccCEEECCCCccCC-----c-hhhcccCC
Confidence 7 22 2 35579999999999999862 2344 67899999999999997 3 56889999
Q ss_pred ccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 374 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 374 L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
|+.|+|++|.|++ +++ +..+++|+.|+|++|.|++. ..+..+ ++|+.|+|++|.+.+..
T Consensus 155 L~~L~Ls~N~l~~------~~~----l~~l~~L~~L~Ls~N~i~~l------~~l~~l-~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 155 LDTLSLEDNQISD------IVP----LAGLTKLQNLYLSKNHISDL------RALAGL-KNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSEEECCSSCCCC------CGG----GTTCTTCCEEECCSSCCCBC------GGGTTC-TTCSEEECCSEEEECCC
T ss_pred CCEEECcCCcCCC------chh----hccCCCCCEEECcCCCCCCC------hHHccC-CCCCEEEccCCcCcCCc
Confidence 9999999999987 332 67789999999999999983 246664 56999999999987753
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=2.3e-15 Score=140.00 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=18.4
Q ss_pred CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
.+++|++|++++|++++ ++ .+..+++|+.|++++|.|++
T Consensus 126 ~l~~L~~L~Ls~N~i~~-----~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKS-----IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp TCTTCCEEECTTSCCCB-----CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CcccccEEECCCCcCCC-----Ch-HHccCCCCCEEECCCCcCcc
Confidence 34445555555555543 11 34444555555555555544
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.6e-15 Score=155.62 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=18.7
Q ss_pred cEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 347 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 347 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
++|+|++|+|+. +|..+..+++|+.|+|++|++++
T Consensus 210 ~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCC
Confidence 555555555553 44444445555555555555554
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=2.2e-15 Score=151.30 Aligned_cols=218 Identities=17% Similarity=0.098 Sum_probs=148.4
Q ss_pred hhccCCceeeeehhhh------ccccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEE
Q 012930 148 HLACDYSKLSYHCQQF------GHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL 221 (453)
Q Consensus 148 ~l~~~l~~l~l~~~~~------~~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L 221 (453)
|....++.+.++...+ ...++.++++++....++. ...+|++|++++|.+.... ...++|++|
T Consensus 68 c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~--------~~~~~L~~L 136 (454)
T 1jl5_A 68 CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALS--------DLPPLLEYL 136 (454)
T ss_dssp HHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC--------SCCTTCCEE
T ss_pred hhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCccc--------CCCCCCCEE
Confidence 3334455555555422 2367888888877765443 2378888888888765321 112588888
Q ss_pred EcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHH
Q 012930 222 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 301 (453)
Q Consensus 222 ~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 301 (453)
++++|.+++. + .+.. +.+|++|++++|.++... . ..++|++|++++|.+.+ .+ .
T Consensus 137 ~L~~n~l~~l-p-~~~~--------l~~L~~L~l~~N~l~~lp---------~---~~~~L~~L~L~~n~l~~-l~-~-- 190 (454)
T 1jl5_A 137 GVSNNQLEKL-P-ELQN--------SSFLKIIDVDNNSLKKLP---------D---LPPSLEFIAAGNNQLEE-LP-E-- 190 (454)
T ss_dssp ECCSSCCSSC-C-CCTT--------CTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSS-CC-C--
T ss_pred ECcCCCCCCC-c-ccCC--------CCCCCEEECCCCcCcccC---------C---CcccccEEECcCCcCCc-Cc-c--
Confidence 8888888752 2 2222 578888888888877521 1 12488888888888876 33 2
Q ss_pred HHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC
Q 012930 302 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD 381 (453)
Q Consensus 302 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 381 (453)
+..+++|++|++++|.+++. |. ...+|++|++++|.++. +| .+..+++|+.|++++
T Consensus 191 ---~~~l~~L~~L~l~~N~l~~l---------~~------~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 191 ---LQNLPFLTAIYADNNSLKKL---------PD------LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp ---CTTCTTCCEEECCSSCCSSC---------CC------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCS
T ss_pred ---ccCCCCCCEEECCCCcCCcC---------CC------CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCC
Confidence 24578888999988888751 11 12578999999998884 55 377889999999999
Q ss_pred CCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 382 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 382 N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
|++++ +| . ..++|++|++++|+++.. +. ..++|++|++++|.+++
T Consensus 247 N~l~~------l~---~---~~~~L~~L~l~~N~l~~l-----~~----~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 247 NLLKT------LP---D---LPPSLEALNVRDNYLTDL-----PE----LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp SCCSS------CC---S---CCTTCCEEECCSSCCSCC-----CC----CCTTCCEEECCSSCCSE
T ss_pred CcCCc------cc---c---cccccCEEECCCCccccc-----Cc----ccCcCCEEECcCCccCc
Confidence 99886 44 1 126889999999988762 22 12458888888888876
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.7e-14 Score=131.22 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=101.3
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
.+|++|++++|.++. ..+..+..+++|++|+|++|.+.. .+... +..+++|+.|+|++|.+++..+
T Consensus 40 ~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~----~~~l~~L~~L~Ls~N~l~~l~~- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITK--------LEPGVFDSLINLKELYLGSNQLGA-LPVGV----FDSLTQLTVLDLGTNQLTVLPS- 105 (229)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCC-CCTTT----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCCEEEcCCCccCc--------cCHHHhhCccCCcEEECCCCCCCC-cChhh----cccCCCcCEEECCCCcCCccCh-
Confidence 557777777777776 334556677888888888888765 22211 2446888888888888876322
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+. .+++|++|+|++|+|+. +|..+..+++|+.|+|++|+|+. ++. ..+..+++|+
T Consensus 106 -------~~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~ 162 (229)
T 3e6j_A 106 -------AVFD---RLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKS------IPH--GAFDRLSSLT 162 (229)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCC------CCT--TTTTTCTTCC
T ss_pred -------hHhC---cchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCc------cCH--HHHhCCCCCC
Confidence 2233 66888888888888884 67777888888888888888876 432 4467778888
Q ss_pred EEEccCCCCChhh--HHHHHHHHhc
Q 012930 408 ELYLENCELSGRG--VSQLLDTLST 430 (453)
Q Consensus 408 ~L~L~~n~l~~~~--~~~l~~~l~~ 430 (453)
.|++++|.++... ...+...+..
T Consensus 163 ~L~l~~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp EEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred EEEeeCCCccCCcchhHHHHHHHHh
Confidence 8888888877542 3344444444
No 109
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.49 E-value=1.5e-13 Score=133.05 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=135.2
Q ss_pred hcCCCccEEEcCCCCCCh-----hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEc
Q 012930 213 QNSETLASLEFLHCKLSP-----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKL 287 (453)
Q Consensus 213 ~~~~~L~~L~L~~n~l~~-----~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L 287 (453)
..+++|+.|.+....... .....+...+.. +++|+.|++++|.-.. ++. + .+++|++|+|
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~----~P~L~~L~L~g~~~l~---------l~~-~-~~~~L~~L~L 200 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA----MPLLNNLKIKGTNNLS---------IGK-K-PRPNLKSLEI 200 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT----CTTCCEEEEECCBTCB---------CCS-C-BCTTCSEEEE
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhc----CCCCcEEEEeCCCCce---------ecc-c-cCCCCcEEEE
Confidence 356788888876543211 000011122222 4789999998772111 111 2 3789999999
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC--CCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH
Q 012930 288 RHCHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 365 (453)
Q Consensus 288 ~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 365 (453)
..|.+.+..+..++. ..+++|+.|+|+.+ ...+. .+...+...+.. ..+++|++|+|++|.+++.++..+.
T Consensus 201 ~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~---~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 201 ISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFD---GDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp ECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCC---SCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred ecCCCChHHHHHHHH---ccCCCCcEEEEeccccccccc---hhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHH
Confidence 999998887777653 34799999999642 22211 111112222221 2578999999999999987766665
Q ss_pred HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 366 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 366 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
.+ ..+++|++|+|+.|.|++.|+.++.. .+.++++|+.|+|++|.|++.++..+.+++ ...++++.++
T Consensus 274 ~a-~~~~~L~~LdLs~n~L~d~G~~~L~~----~L~~l~~L~~L~L~~n~i~d~~~~~l~~al------g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ES-DILPQLETMDISAGVLTDEGARLLLD----HVDKIKHLKFINMKYNYLSDEMKKELQKSL------PMKIDVSDSQ 341 (362)
T ss_dssp HC-SSGGGCSEEECCSSCCBHHHHHHHHT----THHHHTTCSEEECCSBBCCHHHHHHHHHHC------CSEEECCSBC
T ss_pred hC-ccCCCCCEEECCCCCCChHHHHHHHh----hcccCCcceEEECCCCcCCHHHHHHHHHHc------CCEEEecCCc
Confidence 43 46889999999999999999888763 345668999999999999999888877765 3558998886
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=5.8e-16 Score=159.37 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=88.6
Q ss_pred CccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhh
Q 012930 281 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 360 (453)
Q Consensus 281 ~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~ 360 (453)
.|+.|+|++|.+++ .+. + ..+++|+.|+|++|.++. +|..++ .+++|++|+|++|+|+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~-----~~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls~N~l~~-- 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L-----EQLLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN-- 500 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G-----GGGTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC--
T ss_pred CceEEEecCCCCCC-CcC-c-----cccccCcEeecCcccccc---------cchhhh---cCCCCCEEECCCCCCCC--
Confidence 58888888888876 442 2 446888888988888874 446666 66888889999988886
Q ss_pred HHHHHHHHhCCCCccEEeCCCCCCChhHHHhHH-HHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEE
Q 012930 361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLI-PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 439 (453)
Q Consensus 361 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~-~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~ 439 (453)
+| .+..+++|+.|+|++|.|++. . | ..+..+++|+.|+|++|+++.... .....+..+ ++|+.|+
T Consensus 501 ---lp-~l~~l~~L~~L~Ls~N~l~~~-----~~p---~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~l-p~L~~L~ 566 (567)
T 1dce_A 501 ---VD-GVANLPRLQELLLCNNRLQQS-----AAI---QPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEML-PSVSSIL 566 (567)
T ss_dssp ---CG-GGTTCSSCCEEECCSSCCCSS-----STT---GGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHC-TTCSEEE
T ss_pred ---Cc-ccCCCCCCcEEECCCCCCCCC-----CCc---HHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHC-cccCccC
Confidence 56 688888899999998888772 1 5 557777888999999988765310 011222222 3388886
Q ss_pred C
Q 012930 440 I 440 (453)
Q Consensus 440 L 440 (453)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=4.7e-15 Score=144.47 Aligned_cols=178 Identities=20% Similarity=0.165 Sum_probs=111.6
Q ss_pred cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH
Q 012930 191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 270 (453)
Q Consensus 191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~ 270 (453)
+.++++++.+...... -.+.++.|+|++|.|+......+.. .+.+|+.|++++|.++.
T Consensus 21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~~-------~l~~L~~L~L~~N~i~~-------- 78 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTPT-------RLTNLHSLLLSHNHLNF-------- 78 (361)
T ss_dssp TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSSS-------CCTTCCEEECCSSCCCE--------
T ss_pred CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhhh-------cccccCEEECCCCcCCc--------
Confidence 5678887775543211 2245788888888887654433320 15778888888888776
Q ss_pred HHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEE
Q 012930 271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 350 (453)
Q Consensus 271 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~ 350 (453)
..+..+..+++|++|+|++|++....+.. +..+++|++|+|++|.|++..+ ..+. .+++|++|+
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~--------~~~~---~l~~L~~L~ 142 (361)
T 2xot_A 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFL-----FSDLQALEVLLLYNNHIVVVDR--------NAFE---DMAQLQKLY 142 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCEECT--------TTTT---TCTTCCEEE
T ss_pred cChhhccCCCCCCEEECCCCcCCcCCHHH-----hCCCcCCCEEECCCCcccEECH--------HHhC---CcccCCEEE
Confidence 23345667788888888888876632222 2446788888888888775333 3333 667888888
Q ss_pred ecCCCCChhhHHHHHHHH----hCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC--ccEEEccCCCCChh
Q 012930 351 LRGNNLCKADARDLGSAL----VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSGR 419 (453)
Q Consensus 351 L~~n~l~~~~~~~l~~~l----~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~--L~~L~L~~n~l~~~ 419 (453)
|++|+|+. ++..+ ..+++|+.|+|++|+|+.-.. ..+..++. ++.|+|++|.+...
T Consensus 143 L~~N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 143 LSQNQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPL--------TDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCH--------HHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCH--------HHhhhccHhhcceEEecCCCccCC
Confidence 88888775 33322 457788888888888776221 11222233 46788888877653
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.5e-14 Score=131.52 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=121.1
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
|.-+.++.+++.++. ++.. -.++|++|+|++|.+.+..+..+ ..+++|++|+|++|.++...+
T Consensus 19 Cs~~~v~c~~~~l~~---------ip~~--~~~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~i~~- 81 (229)
T 3e6j_A 19 CSGTTVDCRSKRHAS---------VPAG--IPTNAQILYLHDNQITKLEPGVF-----DSLINLKELYLGSNQLGALPV- 81 (229)
T ss_dssp EETTEEECTTSCCSS---------CCSC--CCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-
T ss_pred EeCCEeEccCCCcCc---------cCCC--CCCCCCEEEcCCCccCccCHHHh-----hCccCCcEEECCCCCCCCcCh-
Confidence 556788888888776 2222 23789999999999988545433 457999999999999976322
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+. .+++|++|+|++|+|+. ..+..+..+++|+.|+|++|.|+. +| ..+..+++|+
T Consensus 82 -------~~~~---~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~~~~l~~L~ 138 (229)
T 3e6j_A 82 -------GVFD---SLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE------LP---RGIERLTHLT 138 (229)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS------CC---TTGGGCTTCS
T ss_pred -------hhcc---cCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc------cC---cccccCCCCC
Confidence 2233 77999999999999996 233457889999999999999996 66 5567889999
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 408 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 408 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
+|+|++|+|+.. ....+..+ ++|+.|++++|.+....
T Consensus 139 ~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 139 HLALDQNQLKSI----PHGAFDRL-SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp EEECCSSCCCCC----CTTTTTTC-TTCCEEECTTSCBCTTB
T ss_pred EEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCCccCCc
Confidence 999999999874 12345553 56999999999987543
No 113
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.48 E-value=3e-13 Score=118.06 Aligned_cols=93 Identities=15% Similarity=0.275 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCccEEEcCCC-CCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCc
Q 012930 204 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 282 (453)
Q Consensus 204 ~~~~~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L 282 (453)
+...+..+..+-+.|++|+|++| .|.+.+...++++|+.+ +.|+.|+|++|.+.+.++. .+.+.+..+++|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~igd~ga~----alA~aL~~N~tL 100 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEAR----GLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHT----THHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCCCChHHHH----HHHHHHhcCCcc
Confidence 33445555666778888888885 88888888888776653 4555555555555543333 344444444455
Q ss_pred cEEEcCCCCCChhHHHHHHHHH
Q 012930 283 CSLKLRHCHLDRDFGRMVFSSL 304 (453)
Q Consensus 283 ~~L~L~~n~l~~~~~~~l~~~L 304 (453)
++|+|++|.|++.+...|+++|
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHT
T ss_pred CeEecCCCcCCHHHHHHHHHHH
Confidence 5555555555554444444443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=131.65 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=96.3
Q ss_pred cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930 219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298 (453)
Q Consensus 219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 298 (453)
+++++++|.++. .+..+ ...+++|++++|.++... ....+..+++|++|+|++|.+++..+.
T Consensus 14 ~~l~~s~n~l~~-iP~~~----------~~~~~~L~L~~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI----------PQYTAELRLNNNEFTVLE-------ATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSCCSS-CCSCC----------CTTCSEEECCSSCCCEEC-------CCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCCccc-CccCC----------CCCCCEEEcCCCcCCccC-------chhhhccCCCCCEEECCCCcCCEECHH
Confidence 467777777663 11110 245677777777776511 012355677777777777777663332
Q ss_pred HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEe
Q 012930 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 378 (453)
Q Consensus 299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 378 (453)
.+ ..+++|++|+|++|.+++..+ ..+. .+++|++|+|++|+|+. ..+..+..+++|+.|+
T Consensus 76 ~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 76 AF-----EGASGVNEILLTSNRLENVQH--------KMFK---GLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TT-----TTCTTCCEEECCSSCCCCCCG--------GGGT---TCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEEE
T ss_pred Hh-----CCCCCCCEEECCCCccCccCH--------hHhc---CCcCCCEEECCCCcCCe----ECHhHcCCCccCCEEE
Confidence 22 346777777777777775333 3343 56777777777777775 2355666777777777
Q ss_pred CCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 379 Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
|++|.|+.. .| ..+..+++|++|+|++|.++.
T Consensus 136 L~~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 136 LYDNQITTV-----AP---GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCB-----CT---TTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCEE-----CH---HHhcCCCCCCEEEecCcCCcC
Confidence 777777662 23 446666777777777777653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.2e-14 Score=132.16 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=70.6
Q ss_pred hcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCC
Q 012930 185 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 264 (453)
Q Consensus 185 ~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~ 264 (453)
..+++|+.|++++|.+.... .+..+++|++|+|++|.|++..+ +.. +++|+.|++++|.++...
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~~~~--l~~--------l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISDLSP--LKD--------LTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTT--------CSSCCEEECCSSCCSCCT
T ss_pred hhcCcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCCChh--hcc--------CCCCCEEECCCCccCCcC
Confidence 34455555555555543221 13345555555555555554332 111 355555555555554411
Q ss_pred chhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCC
Q 012930 265 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 344 (453)
Q Consensus 265 ~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~ 344 (453)
. +.. ++|++|++++|.+++. + . +..+++|+.|++++|.+++. + .+. .++
T Consensus 102 ---------~-~~~-~~L~~L~L~~N~l~~~-~-~-----l~~l~~L~~L~Ls~N~i~~~---------~-~l~---~l~ 150 (263)
T 1xeu_A 102 ---------G-IPS-ACLSRLFLDNNELRDT-D-S-----LIHLKNLEILSIRNNKLKSI---------V-MLG---FLS 150 (263)
T ss_dssp ---------T-CCC-SSCCEEECCSSCCSBS-G-G-----GTTCTTCCEEECTTSCCCBC---------G-GGG---GCT
T ss_pred ---------c-ccc-CcccEEEccCCccCCC-h-h-----hcCcccccEEECCCCcCCCC---------h-HHc---cCC
Confidence 1 111 5555555555555541 1 1 12345555555555555531 1 222 345
Q ss_pred cccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 345 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
+|++|++++|++++. ..+..+++|+.|++++|.++.
T Consensus 151 ~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence 555555555555541 334455555555555555543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.6e-14 Score=130.48 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=100.2
Q ss_pred cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930 219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298 (453)
Q Consensus 219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 298 (453)
+.++.+++.++. .+..+ ..+++.|++++|.++. ..+..+..+++|++|+|++|.+.+..+.
T Consensus 14 ~~v~c~~~~l~~-iP~~l----------~~~l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL----------PETITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TEEECTTSCCSS-CCSSC----------CTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEEcCCCCcCc-CCCcc----------CcCCCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 466777766652 11111 2567888888887776 2233566777888888888887764444
Q ss_pred HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEe
Q 012930 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 378 (453)
Q Consensus 299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 378 (453)
.+ ..+++|++|+|++|.++...+ .. +..+++|++|+|++|+|+. ..+..+..+++|+.|+
T Consensus 75 ~~-----~~l~~L~~L~Ls~N~l~~l~~--------~~---f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 75 AF-----QGLRSLNSLVLYGNKITELPK--------SL---FEGLFSLQLLLLNANKINC----LRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TT-----TTCSSCCEEECCSSCCCCCCT--------TT---TTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEE
T ss_pred Hh-----hCCcCCCEEECCCCcCCccCH--------hH---ccCCCCCCEEECCCCCCCE----eCHHHcCCCCCCCEEE
Confidence 33 446778888888888775222 12 2356778888888888776 2345677778888888
Q ss_pred CCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 379 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 379 Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
|++|.|+. ++. ..+..+++|++|+|++|.++.
T Consensus 135 L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 135 LYDNKLQT------IAK--GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCSC------CCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCE------ECH--HHHhCCCCCCEEEeCCCCcCC
Confidence 88888776 331 346666778888888887644
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=2e-14 Score=129.85 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=105.3
Q ss_pred cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHH
Q 012930 191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 270 (453)
Q Consensus 191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~ 270 (453)
+.++++++.+...... -.++|++|+|++|.|+...+..+.. +.+|+.|++++|.++.
T Consensus 14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~-------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISE-------- 70 (220)
T ss_dssp TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCE--------
T ss_pred CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCC--------
Confidence 4677777765443211 1257888888888887655444432 4778888888888876
Q ss_pred HHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEE
Q 012930 271 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 350 (453)
Q Consensus 271 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~ 350 (453)
..+..+.++++|++|+|++|.++. .+..+ +..+++|++|+|++|.+++..+ ..+. .+++|++|+
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~----f~~l~~L~~L~L~~N~l~~~~~--------~~~~---~l~~L~~L~ 134 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKITE-LPKSL----FEGLFSLQLLLLNANKINCLRV--------DAFQ---DLHNLNLLS 134 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCCCC-CCTTT----TTTCTTCCEEECCSSCCCCCCT--------TTTT---TCTTCCEEE
T ss_pred cCHHHhhCCcCCCEEECCCCcCCc-cCHhH----ccCCCCCCEEECCCCCCCEeCH--------HHcC---CCCCCCEEE
Confidence 345667788888888888888875 33222 3446888888888888886433 3333 667888888
Q ss_pred ecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930 351 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 385 (453)
Q Consensus 351 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 385 (453)
|++|+|+. ..+..+..+++|+.|+|++|++.
T Consensus 135 L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQT----IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSC----CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCE----ECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888886 22345777888888888888874
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.1e-14 Score=129.74 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=105.3
Q ss_pred cEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHH-HHHHHhhccccCCcceeEEEccCCCCCCCCchhhH
Q 012930 191 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 269 (453)
Q Consensus 191 ~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~ 269 (453)
+.+++++|.++.... .-.+.+++|+|++|.|+...+. .+.. +++|+.|++++|.++.
T Consensus 14 ~~l~~s~n~l~~iP~-------~~~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~------- 71 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-------HIPQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITD------- 71 (220)
T ss_dssp TEEECCSSCCSSCCS-------CCCTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCE-------
T ss_pred CEeEeCCCCcccCcc-------CCCCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCE-------
Confidence 578888887654221 1234678888888888765322 2222 5778888888888876
Q ss_pred HHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEE
Q 012930 270 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 349 (453)
Q Consensus 270 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L 349 (453)
..+..+.++++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+ ..+. .+++|++|
T Consensus 72 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L 134 (220)
T 2v70_A 72 -IEEGAFEGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSNRITCVGN--------DSFI---GLSSVRLL 134 (220)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTSCCCCBCT--------TSST---TCTTCSEE
T ss_pred -ECHHHhCCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCCcCCeECH--------hHcC---CCccCCEE
Confidence 233466778888888888888876433322 446888888888888886433 3333 66788888
Q ss_pred EecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCC
Q 012930 350 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 385 (453)
Q Consensus 350 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 385 (453)
+|++|+|+. ..+..+..+++|+.|++++|++.
T Consensus 135 ~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITT----VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence 888888886 23567778888888888888875
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=9.5e-16 Score=157.78 Aligned_cols=197 Identities=20% Similarity=0.169 Sum_probs=134.0
Q ss_pred cCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCc
Q 012930 186 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 265 (453)
Q Consensus 186 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~ 265 (453)
.+++|+.|+|++|.+... +..+.++++|++|++++|......+..+. . +.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-----p~~i~~l~~L~~L~l~~n~~l~~l~~ll~--------------~-----~~~~~--- 399 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-----QSELESCKELQELEPENKWCLLTIILLMR--------------A-----LDPLL--- 399 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-----HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------H-----HCTGG---
T ss_pred cCccceeccCChhhHHhh-----HHHHHHHHHHHHhccccchhhhhHHHHHH--------------h-----ccccc---
Confidence 456777777777775422 22234556777777755432111111110 0 01222
Q ss_pred hhhHHHHHHhhcCCCCccEEE-cCCCCCChhHHH------HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhc
Q 012930 266 SSVVVELVSFLSSGRSLCSLK-LRHCHLDRDFGR------MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 338 (453)
Q Consensus 266 ~~i~~~l~~~l~~~~~L~~L~-L~~n~l~~~~~~------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~ 338 (453)
..+..+..+++|+.|+ ++.|.+.+ ... .+. .+ . ...|+.|+|++|.+++ +|. ++
T Consensus 400 -----~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~-~l-~-~~~L~~L~Ls~n~l~~---------lp~-~~ 460 (567)
T 1dce_A 400 -----YEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVL-KM-E-YADVRVLHLAHKDLTV---------LCH-LE 460 (567)
T ss_dssp -----GHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHH-HH-H-HTTCSEEECTTSCCSS---------CCC-GG
T ss_pred -----CCHHHHHHHHhcccCcchhhcccch-hhhhhhhccccc-cc-C-ccCceEEEecCCCCCC---------CcC-cc
Confidence 4566667778888887 66654432 111 111 11 1 2469999999999986 333 55
Q ss_pred CCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 339 AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 339 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
.+++|++|+|++|.|+. +|..+..+++|+.|+|++|.|++ +| .+..+++|+.|+|++|+|+.
T Consensus 461 ---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~------lp----~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 461 ---QLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN------VD----GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp ---GGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC------CG----GGTTCSSCCEEECCSSCCCS
T ss_pred ---ccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC------Cc----ccCCCCCCcEEECCCCCCCC
Confidence 67899999999999995 78899999999999999999997 55 36788999999999999988
Q ss_pred hhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 419 RGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 419 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
.. .+..+..+ ++|+.|+|++|.|++..+
T Consensus 523 ~~---~p~~l~~l-~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 523 SA---AIQPLVSC-PRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SS---TTGGGGGC-TTCCEEECTTSGGGGSSS
T ss_pred CC---CcHHHhcC-CCCCEEEecCCcCCCCcc
Confidence 31 06677774 569999999999987644
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=6.9e-14 Score=146.07 Aligned_cols=186 Identities=18% Similarity=0.103 Sum_probs=111.1
Q ss_pred CCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchh
Q 012930 188 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 267 (453)
Q Consensus 188 ~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~ 267 (453)
.++++|+|++|.++..... .+.++++|++|+|++|.|+...+.++.. +++|++|+|++|+++.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~--------L~~L~~L~Ls~N~l~~----- 114 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS----- 114 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcC--------CCCCCEEEccCCcCCC-----
Confidence 4577777777775543222 2456777777777777777655444433 5777788888777765
Q ss_pred hHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCccc
Q 012930 268 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 347 (453)
Q Consensus 268 i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~ 347 (453)
..+..+.++++|++|+|++|++++-.+.. +.++++|++|++++|.++... +|..++ .+++|+
T Consensus 115 ---l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~---~l~~L~ 176 (635)
T 4g8a_A 115 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE 176 (635)
T ss_dssp ---ECGGGGTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred ---CCHHHhcCCCCCCEEECCCCcCCCCChhh-----hhcCcccCeeccccCccccCC-------Cchhhc---cchhhh
Confidence 22345667778888888888776522211 244677888888888776421 123444 457778
Q ss_pred EEEecCCCCChhhHHHHHHHHhCCC-CccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 348 LLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 348 ~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+|++++|+++......+ ..+...+ .+..++++.|.++. ++ ........++.+++.+|..+.
T Consensus 177 ~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~------i~---~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp EEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCE------EC---TTTTTTCEEEEEEEESCCSSH
T ss_pred hhcccCccccccccccc-cchhhhhhhhhhhhcccCcccc------cC---cccccchhhhhhhhhcccccc
Confidence 88888887765211111 1122222 34567777777765 32 112233456677777776554
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=2.3e-13 Score=121.59 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=117.3
Q ss_pred eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930 250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329 (453)
Q Consensus 250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 329 (453)
-+.++.+++.++.. +.. ..++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+
T Consensus 9 ~~~v~c~~~~l~~~---------p~~--~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--- 69 (208)
T 2o6s_A 9 GTTVECYSQGRTSV---------PTG--IPAQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPN--- 69 (208)
T ss_dssp TTEEECCSSCCSSC---------CSC--CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT---
T ss_pred CCEEEecCCCccCC---------CCC--CCCCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccCh---
Confidence 45677777777652 211 2468999999999998633322 2457999999999999986332
Q ss_pred cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE
Q 012930 330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 409 (453)
Q Consensus 330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L 409 (453)
..+. .+++|++|++++|+++. ..+..+..+++|+.|++++|.|+. ++. ..+..+++|++|
T Consensus 70 -----~~~~---~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L 129 (208)
T 2o6s_A 70 -----GVFN---KLTSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQS------LPD--GVFDKLTQLKDL 129 (208)
T ss_dssp -----TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEE
T ss_pred -----hhcC---CCCCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcc------cCH--hHhccCCcCCEE
Confidence 2233 67899999999999986 233457889999999999999986 432 446788999999
Q ss_pred EccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 012930 410 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 450 (453)
Q Consensus 410 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 450 (453)
++++|.++.. ....+.. .++|++|++++|.+....+
T Consensus 130 ~l~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSV----PDGVFDR-LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCC----CTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred ECCCCcccee----CHHHhcc-CCCccEEEecCCCeecCCC
Confidence 9999999874 2233555 3569999999999877554
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=1.5e-14 Score=140.93 Aligned_cols=181 Identities=21% Similarity=0.134 Sum_probs=133.1
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHh-cCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQ-NSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~-~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
..+.++++++.+..++..+. ..++.|+|++|.+....... +. .+++|++|+|++|.|+...+..+..
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~------ 86 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVP------ 86 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTT------
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccC------
Confidence 44567777777766665432 46899999999976543322 33 7889999999999998766555543
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
+.+|++|++++|.++. ..+..+..+++|++|+|++|.+....+..+ ..+++|+.|+|++|.+++.
T Consensus 87 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 87 --VPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp --CTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSSCCCSC
T ss_pred --CCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHh-----CCcccCCEEECCCCcCCee
Confidence 5889999999999887 334467789999999999999987444433 4579999999999999863
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCC--ccEEeCCCCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIE 385 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~N~i~ 385 (453)
.. ..+..+..+++|+.|+|++|+|+.- -+..+..++. ++.|+|++|++.
T Consensus 152 ~~--------~~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 152 PV--------ELIKDGNKLPKLMLLDLSSNKLKKL----PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CG--------GGTC----CTTCCEEECCSSCCCCC----CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CH--------HHhcCcccCCcCCEEECCCCCCCcc----CHHHhhhccHhhcceEEecCCCcc
Confidence 22 2222113678999999999999973 2345666776 488999999986
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.2e-14 Score=154.15 Aligned_cols=114 Identities=23% Similarity=0.211 Sum_probs=56.9
Q ss_pred HHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEec
Q 012930 273 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 352 (453)
Q Consensus 273 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~ 352 (453)
+..+..++.|+.|+|++|.+.. .+..+. .+++|++|+|++|.|+. +|..++ .+++|++|+|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-----~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls 278 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-----KYDFLTRLYLNGNSLTE---------LPAEIK---NLSNLRVLDLS 278 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGG-----GCCSCSCCBCTTSCCSC---------CCGGGG---GGTTCCEEECT
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhc-----CCCCCCEEEeeCCcCcc---------cChhhh---CCCCCCEEeCc
Confidence 3344455555555555555542 332221 24555555555555552 224444 34555555665
Q ss_pred CCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 353 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 353 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
+|.|+. +|..+..+++|+.|+|++|.|+. +| ..++.+++|+.|+|++|.|+.
T Consensus 279 ~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------lp---~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 279 HNRLTS-----LPAELGSCFQLKYFYFFDNMVTT------LP---WEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TSCCSS-----CCSSGGGGTTCSEEECCSSCCCC------CC---SSTTSCTTCCCEECTTSCCCS
T ss_pred CCcCCc-----cChhhcCCCCCCEEECCCCCCCc------cC---hhhhcCCCccEEeCCCCccCC
Confidence 555553 45555555555666665555553 44 335555555566666655554
No 124
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=1.2e-13 Score=144.11 Aligned_cols=186 Identities=17% Similarity=0.084 Sum_probs=130.6
Q ss_pred CCccEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChh
Q 012930 216 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 295 (453)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~ 295 (453)
+++++|+|++|.|+...+..+.. +++|++|+|++|.++. .-+.++.++++|++|+|++|+++.-
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~--------l~~L~~L~Ls~N~i~~--------i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS--------FPELQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTCCCCE--------ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC--------CCCCCEEECCCCcCCC--------cChhHhcCCCCCCEEEccCCcCCCC
Confidence 47999999999999777667655 6889999999998876 2344677889999999999998773
Q ss_pred HHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCcc
Q 012930 296 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 375 (453)
Q Consensus 296 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 375 (453)
.+.. +..+++|++|++++|.+++..+ ..++ ++++|++|+|++|.++.. .++..+..+++|+
T Consensus 116 ~~~~-----f~~L~~L~~L~Ls~N~l~~l~~--------~~~~---~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 116 ALGA-----FSGLSSLQKLVAVETNLASLEN--------FPIG---HLKTLKELNVAHNLIQSF---KLPEYFSNLTNLE 176 (635)
T ss_dssp CGGG-----GTTCTTCCEEECTTSCCCCSTT--------CCCT---TCTTCCEEECCSSCCCCC---CCCGGGGGCTTCC
T ss_pred CHHH-----hcCCCCCCEEECCCCcCCCCCh--------hhhh---cCcccCeeccccCccccC---CCchhhccchhhh
Confidence 3222 3557899999999999886332 2233 778999999999988752 1456677889999
Q ss_pred EEeCCCCCCChhHHHhHHHHHHhhcCCC-CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 376 ILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 376 ~L~Ls~N~i~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+|++++|+|+......+ ..+... ..+..++++.|.++.. ...... ...+..+++++|....
T Consensus 177 ~L~L~~N~l~~~~~~~l-----~~L~~l~~~~~~~~ls~n~l~~i-----~~~~~~-~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDL-----RVLHQMPLLNLSLDLSLNPMNFI-----QPGAFK-EIRLHKLTLRNNFDSL 238 (635)
T ss_dssp EEECCSSCCCEECGGGG-----HHHHTCTTCCCEEECTTCCCCEE-----CTTTTT-TCEEEEEEEESCCSSH
T ss_pred hhcccCccccccccccc-----cchhhhhhhhhhhhcccCccccc-----Cccccc-chhhhhhhhhcccccc
Confidence 99999998876311111 112222 2455788999988763 222222 2336778888876543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=1.2e-13 Score=119.09 Aligned_cols=138 Identities=22% Similarity=0.243 Sum_probs=93.1
Q ss_pred CCCccEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC
Q 012930 279 GRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 357 (453)
Q Consensus 279 ~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~ 357 (453)
.++|++|++++|.+. +..+..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT-----AEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC-----GGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCC
T ss_pred cccCCEEECCCCCCChhhHHHHH-----HhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCc
Confidence 466777777777776 3333322 3357788888888887752 23336778888888888887
Q ss_pred hhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcE
Q 012930 358 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 437 (453)
Q Consensus 358 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~ 437 (453)
. .++..+..+++|+.|++++|.|++ +|.+ ..+..+++|++|++++|.++..... ....+..+ ++|++
T Consensus 85 ~----~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l-~~L~~ 151 (168)
T 2ell_A 85 G----GLDMLAEKLPNLTHLNLSGNKLKD------ISTL-EPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLL-PQLTY 151 (168)
T ss_dssp S----CCCHHHHHCTTCCEEECBSSSCCS------SGGG-GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTC-SSCCE
T ss_pred h----HHHHHHhhCCCCCEEeccCCccCc------chhH-HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhC-ccCcE
Confidence 6 255666678888888888888876 3321 3467778888888888887764210 11355553 45888
Q ss_pred EECcCCCCCc
Q 012930 438 LSIADNNLGR 447 (453)
Q Consensus 438 L~Ls~N~l~~ 447 (453)
|++++|.+..
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 8888887755
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.1e-13 Score=112.18 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=85.3
Q ss_pred CCccEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930 280 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358 (453)
Q Consensus 280 ~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~ 358 (453)
++|++|++++|.+. +..+..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-----DEFEELEFLSTINVGLTSI-------------ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-----TTCTTCCEEECTTSCCCCC-------------TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCChhHHHHHH-----hhcCCCcEEECcCCCCCCc-------------hhhhcCCCCCEEECCCCcccc
Confidence 56777777777765 3333221 3457778888888777751 223366788888888888876
Q ss_pred hhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEE
Q 012930 359 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 438 (453)
Q Consensus 359 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L 438 (453)
.+|..+..+++|+.|++++|.+++ ++.. ..+..+++|++|++++|.++..... ....+..+ ++|+.|
T Consensus 79 ----~~~~~~~~l~~L~~L~ls~N~i~~------~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l-~~L~~L 145 (149)
T 2je0_A 79 ----GLEVLAEKCPNLTHLNLSGNKIKD------LSTI-EPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLL-PQLTYL 145 (149)
T ss_dssp ----CTHHHHHHCTTCCEEECTTSCCCS------HHHH-GGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHC-TTCCEE
T ss_pred ----hHHHHhhhCCCCCEEECCCCcCCC------hHHH-HHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHC-CCcccc
Confidence 356666778888888888888876 2211 3466678888888888887764221 01344553 448888
Q ss_pred ECcC
Q 012930 439 SIAD 442 (453)
Q Consensus 439 ~Ls~ 442 (453)
|+++
T Consensus 146 ~l~d 149 (149)
T 2je0_A 146 DGYD 149 (149)
T ss_dssp TTBC
T ss_pred cCCC
Confidence 8763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=2.1e-13 Score=117.47 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=66.8
Q ss_pred cCCCccEEEcCCCCCC-hhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCC
Q 012930 214 NSETLASLEFLHCKLS-PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 292 (453)
Q Consensus 214 ~~~~L~~L~L~~n~l~-~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l 292 (453)
..++|++|++++|.++ +..+..+.. +++|+.|++++|.++. + ..+..+++|++|++++|.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--------l~~L~~L~l~~n~l~~---------~-~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAE--------FVNLEFLSLINVGLIS---------V-SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGG--------GGGCCEEEEESSCCCC---------C-SSCCCCSSCCEEEEESCCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHh--------CCCCCEEeCcCCCCCC---------h-hhhccCCCCCEEECcCCcC
Confidence 3356666666666655 222211111 3556666666666555 1 3445556666666666666
Q ss_pred ChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCC
Q 012930 293 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP 372 (453)
Q Consensus 293 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 372 (453)
.+..+..+ ..+++|++|++++|.+++... +..+. .+++|++|++++|.++.... .....+..++
T Consensus 84 ~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~-------~~~l~---~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~ 147 (168)
T 2ell_A 84 FGGLDMLA-----EKLPNLTHLNLSGNKLKDIST-------LEPLK---KLECLKSLDLFNCEVTNLND-YRESVFKLLP 147 (168)
T ss_dssp CSCCCHHH-----HHCTTCCEEECBSSSCCSSGG-------GGGGS---SCSCCCEEECCSSGGGTSTT-HHHHHHTTCS
T ss_pred chHHHHHH-----hhCCCCCEEeccCCccCcchh-------HHHHh---cCCCCCEEEeeCCcCcchHH-HHHHHHHhCc
Confidence 55322222 124566666666666554110 01222 44555566666555554110 0012445555
Q ss_pred CccEEeCCCCCCC
Q 012930 373 NLEILDISDNTIE 385 (453)
Q Consensus 373 ~L~~L~Ls~N~i~ 385 (453)
+|+.|++++|.+.
T Consensus 148 ~L~~L~l~~n~~~ 160 (168)
T 2ell_A 148 QLTYLDGYDREDQ 160 (168)
T ss_dssp SCCEETTEETTSC
T ss_pred cCcEecCCCCChh
Confidence 5555555555544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=2.4e-13 Score=114.72 Aligned_cols=133 Identities=22% Similarity=0.161 Sum_probs=83.4
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
++|+.|++++|.++.. .++..+..+++|++|++++|.+.+. .. +..+++|++|++++|.+++..+
T Consensus 17 ~~l~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~- 81 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG-------KLEGLTDEFEELEFLSTINVGLTSI--AN-----LPKLNKLKKLELSDNRVSGGLE- 81 (149)
T ss_dssp GGCSEEECTTCBCBTT-------BCCSCCTTCTTCCEEECTTSCCCCC--TT-----CCCCTTCCEEECCSSCCCSCTH-
T ss_pred ccCeEEEccCCcCChh-------HHHHHHhhcCCCcEEECcCCCCCCc--hh-----hhcCCCCCEEECCCCcccchHH-
Confidence 5677777777776610 2334456677788888888777663 11 2446778888888887775332
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+. .+++|++|++++|.+++. ..+..+..+++|+.|++++|.+++... ..+ ..+..+++|+
T Consensus 82 -------~~~~---~l~~L~~L~ls~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~---~~~~~l~~L~ 143 (149)
T 2je0_A 82 -------VLAE---KCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLND--YRE---NVFKLLPQLT 143 (149)
T ss_dssp -------HHHH---HCTTCCEEECTTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTT--HHH---HHHHHCTTCC
T ss_pred -------HHhh---hCCCCCEEECCCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHH--HHH---HHHHHCCCcc
Confidence 4444 456788888888887762 123567778888888888887765211 000 1244557788
Q ss_pred EEEccC
Q 012930 408 ELYLEN 413 (453)
Q Consensus 408 ~L~L~~ 413 (453)
+|++++
T Consensus 144 ~L~l~d 149 (149)
T 2je0_A 144 YLDGYD 149 (149)
T ss_dssp EETTBC
T ss_pred cccCCC
Confidence 877653
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=3.8e-14 Score=150.25 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=27.9
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
.+|++|+|++|.++. ++..+..+++|++|+|++|.++. .|..+ ..+++|++|+|++|.|+
T Consensus 247 ~~L~~L~Ls~N~l~~---------lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~-----~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTE---------LPAEIKNLSNLRVLDLSHNRLTS-LPAEL-----GSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CSCSCCBCTTSCCSC---------CCGGGGGGTTCCEEECTTSCCSS-CCSSG-----GGGTTCSEEECCSSCCC
T ss_pred CCCCEEEeeCCcCcc---------cChhhhCCCCCCEEeCcCCcCCc-cChhh-----cCCCCCCEEECCCCCCC
Confidence 445555555555443 33334445555555555555442 33322 22345555555555544
No 130
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.32 E-value=3.6e-13 Score=130.39 Aligned_cols=206 Identities=18% Similarity=0.193 Sum_probs=138.4
Q ss_pred CccEEEcCCCCCCh----hHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhH-HHHHHhhcCCCCccEEEcCCCC
Q 012930 217 TLASLEFLHCKLSP----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV-VELVSFLSSGRSLCSLKLRHCH 291 (453)
Q Consensus 217 ~L~~L~L~~n~l~~----~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~-~~l~~~l~~~~~L~~L~L~~n~ 291 (453)
.++.|.+..+...+ .....+++++.. .++|+.|.+...........-+. ..+...+..+|+|+.|+|++|.
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~----l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEK----FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHH----HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhh----cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 46677777655431 233444433322 37899999976543211110000 0255667788999999999882
Q ss_pred -CChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC---CCChhhHHHHHHH
Q 012930 292 -LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN---NLCKADARDLGSA 367 (453)
Q Consensus 292 -l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n---~l~~~~~~~l~~~ 367 (453)
+. .+. + .+++|++|+|..|.+++... ..+.. ..+++|+.|+|+.+ ...+.+++.+...
T Consensus 184 ~l~--l~~-~------~~~~L~~L~L~~~~l~~~~l--------~~l~~-~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 184 NLS--IGK-K------PRPNLKSLEIISGGLPDSVV--------EDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCB--CCS-C------BCTTCSEEEEECSBCCHHHH--------HHHHH-SBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred Cce--ecc-c------cCCCCcEEEEecCCCChHHH--------HHHHH-ccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 21 111 1 25899999999998875322 23321 15689999998642 2233333344444
Q ss_pred Hh--CCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCC
Q 012930 368 LV--HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 445 (453)
Q Consensus 368 l~--~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 445 (453)
+. .+|+|+.|+|++|.+++.+...++. ...+++|++|+|+.|.|++.|+.+++..+.. .++|+.|+|++|.|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-----a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLE-----SDILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYL 319 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHH-----CSSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHh-----CccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcC
Confidence 43 5789999999999999988777753 3456899999999999999999999887766 46699999999999
Q ss_pred Ccccc
Q 012930 446 GRFCA 450 (453)
Q Consensus 446 ~~~~~ 450 (453)
++.+.
T Consensus 320 ~d~~~ 324 (362)
T 2ra8_A 320 SDEMK 324 (362)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98765
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3.9e-13 Score=118.61 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=101.3
Q ss_pred ceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 249 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 249 ~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
.-+.++++++.++. ++..+ ..+|++|++++|.+.+..+..+ +..+++|++|+|++|.+++..+
T Consensus 9 ~~~~l~~s~~~l~~---------ip~~~--~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~-- 71 (192)
T 1w8a_A 9 EGTTVDCTGRGLKE---------IPRDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP-- 71 (192)
T ss_dssp ETTEEECTTSCCSS---------CCSCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT--
T ss_pred CCCEEEcCCCCcCc---------CccCC--CCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCH--
Confidence 44789999998876 33322 2389999999999876433211 2447899999999999987544
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccE
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 408 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~ 408 (453)
..+. .+++|++|+|++|+|+. ..+..+..+++|+.|+|++|+|++. .| ..+..+++|++
T Consensus 72 ------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~---~~~~~l~~L~~ 130 (192)
T 1w8a_A 72 ------NAFE---GASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV-----MP---GSFEHLNSLTS 130 (192)
T ss_dssp ------TTTT---TCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE-----CT---TSSTTCTTCCE
T ss_pred ------hHcC---CcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee-----CH---HHhhcCCCCCE
Confidence 4444 67899999999999987 2344578899999999999999872 34 55778899999
Q ss_pred EEccCCCCChh
Q 012930 409 LYLENCELSGR 419 (453)
Q Consensus 409 L~L~~n~l~~~ 419 (453)
|+|++|.++..
T Consensus 131 L~L~~N~l~c~ 141 (192)
T 1w8a_A 131 LNLASNPFNCN 141 (192)
T ss_dssp EECTTCCBCCS
T ss_pred EEeCCCCccCc
Confidence 99999998754
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=8e-13 Score=114.84 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCC
Q 012930 342 SLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 417 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 417 (453)
.+++|++|++++|.|+. ++ ..+..+++|+.|++++|.|++ +|.+ ..+..+++|++|++++|.++
T Consensus 62 ~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICR-----IGEGLDQALPDLTELILTNNSLVE------LGDL-DPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSSCCEEECCSSCCCE-----ECSCHHHHCTTCCEEECCSCCCCC------GGGG-GGGGGCTTCCEEECCSSGGG
T ss_pred cCCCCCEEECCCCcccc-----cCcchhhcCCCCCEEECCCCcCCc------chhh-HhhhcCCCCCEEEecCCCCC
Confidence 34445555555554443 22 122444455555555555443 2211 12334444555555555444
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.27 E-value=4.1e-14 Score=137.15 Aligned_cols=181 Identities=20% Similarity=0.058 Sum_probs=80.2
Q ss_pred ccceeccccccchHHHhh-hhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccE-EEcCCCCCChhHHHHHHHHhhcc
Q 012930 166 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLAS-LEFLHCKLSPSFVEGICRSLCSK 243 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~-L~L~~n~l~~~~~~~l~~~L~~~ 243 (453)
.++.|+|+++.+..++.. +.++++|++|+|++|.+...++. ..+.+++++++ +.+.+|+++...+..+..
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~----- 102 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQN----- 102 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCEECTTSBCC-----
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh---hHhhcchhhhhhhcccCCcccccCchhhhh-----
Confidence 455555555555554443 34455566666665553221110 01234444443 334445554433332211
Q ss_pred ccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCC
Q 012930 244 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 322 (453)
Q Consensus 244 ~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 322 (453)
+++|++|++++|.+.... ...+....++..+++.+ +.+.. .+.... ......++.|++++|.|+
T Consensus 103 ---l~~L~~L~l~~n~l~~~~--------~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f---~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 103 ---LPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHT-IERNSF---VGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ---CTTCCEEEEEEECCSSCC--------CCTTCCBSSCEEEEEESCTTCCE-ECTTSS---TTSBSSCEEEECCSSCCC
T ss_pred ---ccccccccccccccccCC--------chhhcccchhhhhhhcccccccc-ccccch---hhcchhhhhhcccccccc
Confidence 355566666666554411 11122333455555543 23332 111100 011234556666666655
Q ss_pred CcccccCcCchHHhhcCCCCCCcccEEEecC-CCCChhhHHHHHH-HHhCCCCccEEeCCCCCCCh
Q 012930 323 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG-NNLCKADARDLGS-ALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 323 ~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~ 386 (453)
.. +.... ...+|++|++++ |.++. ++. ++..+++|+.|||++|+|+.
T Consensus 168 ~i---------~~~~f---~~~~L~~l~l~~~n~l~~-----i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 EI---------HNSAF---NGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EE---------CTTSS---TTEEEEEEECTTCTTCCC-----CCTTTTTTEECCSEEECTTSCCCC
T ss_pred CC---------Chhhc---cccchhHHhhccCCcccC-----CCHHHhccCcccchhhcCCCCcCc
Confidence 31 11111 234566666654 34443 332 44556666666666666655
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.3e-12 Score=115.25 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=97.1
Q ss_pred cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHH-hhcCCCCccEEEcCCCCCChhHH
Q 012930 219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFG 297 (453)
Q Consensus 219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~ 297 (453)
++++++++.++ ..+..+ ...+++|++++|.++.. .+. .+..+++|++|+|++|.+++..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~----------~~~l~~L~l~~n~i~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI----------PLHTTELLLNDNELGRI--------SSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TEEECTTSCCS-SCCSCC----------CTTCSEEECCSCCCCSB--------CCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CEEEcCCCCcC-cCccCC----------CCCCCEEECCCCcCCcc--------CCccccccCCCCCEEECCCCCCCCcCH
Confidence 68889988885 222211 35789999999998762 111 36788999999999999987545
Q ss_pred HHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEE
Q 012930 298 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 377 (453)
Q Consensus 298 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 377 (453)
..+ ..+++|++|+|++|.+++..+ ..+ ..+++|++|+|++|+|+. ..+..+..+++|+.|
T Consensus 72 ~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~---~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 NAF-----EGASHIQELQLGENKIKEISN--------KMF---LGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTT-----TTCTTCCEEECCSCCCCEECS--------SSS---TTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred hHc-----CCcccCCEEECCCCcCCccCH--------HHh---cCCCCCCEEECCCCcCCe----eCHHHhhcCCCCCEE
Confidence 443 457899999999999986433 223 367889999999999987 346678888999999
Q ss_pred eCCCCCCCh
Q 012930 378 DISDNTIED 386 (453)
Q Consensus 378 ~Ls~N~i~~ 386 (453)
+|++|+++.
T Consensus 132 ~L~~N~l~c 140 (192)
T 1w8a_A 132 NLASNPFNC 140 (192)
T ss_dssp ECTTCCBCC
T ss_pred EeCCCCccC
Confidence 999998874
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=114.99 Aligned_cols=141 Identities=19% Similarity=0.158 Sum_probs=105.2
Q ss_pred eeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccC
Q 012930 250 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 329 (453)
Q Consensus 250 L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 329 (453)
-+.++++++.++. ++..+ .++|++|+|++|.++. .+..+ ..+++|+.|+|++|.|++..+
T Consensus 12 ~~~l~~~~~~l~~---------ip~~~--~~~l~~L~L~~n~i~~-ip~~~-----~~l~~L~~L~Ls~N~i~~i~~--- 71 (193)
T 2wfh_A 12 DTVVRCSNKGLKV---------LPKGI--PRDVTELYLDGNQFTL-VPKEL-----SNYKHLTLIDLSNNRISTLSN--- 71 (193)
T ss_dssp TTEEECTTSCCSS---------CCSCC--CTTCCEEECCSSCCCS-CCGGG-----GGCTTCCEEECCSSCCCCCCT---
T ss_pred CCEEEcCCCCCCc---------CCCCC--CCCCCEEECCCCcCch-hHHHh-----hcccCCCEEECCCCcCCEeCH---
Confidence 4688999998876 22222 2589999999999975 44332 457999999999999987433
Q ss_pred cCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEE
Q 012930 330 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 409 (453)
Q Consensus 330 ~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L 409 (453)
..+. .+++|++|+|++|+|+. ..+.++..+++|+.|+|++|.|+. +|. ..+..+++|++|
T Consensus 72 -----~~f~---~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L 131 (193)
T 2wfh_A 72 -----QSFS---NMTQLLTLILSYNRLRC----IPPRTFDGLKSLRLLSLHGNDISV------VPE--GAFNDLSALSHL 131 (193)
T ss_dssp -----TTTT---TCTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECCSSCCCB------CCT--TTTTTCTTCCEE
T ss_pred -----hHcc---CCCCCCEEECCCCccCE----eCHHHhCCCCCCCEEECCCCCCCe------eCh--hhhhcCccccEE
Confidence 3344 78999999999999997 334578899999999999999986 442 457778999999
Q ss_pred EccCCCCChh-hHHHHHHHHhc
Q 012930 410 YLENCELSGR-GVSQLLDTLST 430 (453)
Q Consensus 410 ~L~~n~l~~~-~~~~l~~~l~~ 430 (453)
+|++|.+... ....+...+..
T Consensus 132 ~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 132 AIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp ECCSSCEECSGGGHHHHHHHHH
T ss_pred EeCCCCeecCCcCHHHHHHHHh
Confidence 9999987542 22334444443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=7.1e-14 Score=124.03 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEe
Q 012930 272 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 351 (453)
Q Consensus 272 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L 351 (453)
++..+..+++|++|++++|.+.+ .+ .+. .+++|++|++++|.++. +|..+. .+++|++|++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-----~l~~L~~L~l~~n~l~~---------l~~~~~---~~~~L~~L~L 100 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLS-----GMENLRILSLGRNLIKK---------IENLDA---VADTLEELWI 100 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHH-----HHTTCCEEEEEEEEECS---------CSSHHH---HHHHCSEEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccc-----cCCCCCEEECCCCCccc---------ccchhh---cCCcCCEEEC
Confidence 44466778888888888888776 33 332 25788999999888874 334444 3467889999
Q ss_pred cCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh------HHHHH
Q 012930 352 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG------VSQLL 425 (453)
Q Consensus 352 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~------~~~l~ 425 (453)
++|++++ ++ .+..+++|+.|++++|.|++ ++.+ ..+..+++|++|++++|.++... .....
T Consensus 101 ~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp EEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCc-----CC-ccccCCCCCEEECCCCcCCc------hhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 9998886 44 57778889999999998887 3322 34667788999999999876641 11123
Q ss_pred HHHhcCCCCCcEEECcCCCCCc
Q 012930 426 DTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 426 ~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
..+..+ ++|+.|| +|.+++
T Consensus 168 ~~~~~l-~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 168 EVVKRL-PNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHC-SSCSEEC--CGGGTT
T ss_pred HHHHhC-CCcEEEC--CcccCH
Confidence 345553 5588887 666654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.2e-12 Score=113.70 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=68.0
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcC-CCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
.+|+.|++++|.++. ++. +.. .++|++|++++|.+++- .. +..+++|++|++++|.+++..+
T Consensus 19 ~~L~~L~l~~n~l~~---------i~~-~~~~~~~L~~L~Ls~N~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV---------IEN-LGATLDQFDAIDFSDNEIRKL--DG-----FPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCS---------CCC-GGGGTTCCSEEECCSSCCCEE--CC-----CCCCSSCCEEECCSSCCCEECS
T ss_pred CCceEEEeeCCCCch---------hHH-hhhcCCCCCEEECCCCCCCcc--cc-----cccCCCCCEEECCCCcccccCc
Confidence 455555555555554 111 222 23666666666666542 11 2335566666666666654211
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH--HHhCCCCccEEeCCCCCCChhHHHhHHHHH-HhhcCCC
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS--ALVHIPNLEILDISDNTIEDDGIRSLIPYF-VQASERC 403 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l-~~~l~~~ 403 (453)
..+. .+++|++|++++|.|++ ++. .+..+++|+.|++++|++++ .|.. ...+..+
T Consensus 82 --------~~~~---~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~l 139 (176)
T 1a9n_A 82 --------GLDQ---ALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTN------KKHYRLYVIYKV 139 (176)
T ss_dssp --------CHHH---HCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGG------STTHHHHHHHHC
T ss_pred --------chhh---cCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCC------cHhHHHHHHHHC
Confidence 1123 34566666666666654 333 45566666666666666654 1110 0113344
Q ss_pred CCccEEEccCCCCCh
Q 012930 404 NPLVELYLENCELSG 418 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~ 418 (453)
++|+.|++++|.+.+
T Consensus 140 ~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 140 PQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCSEETTEECCHHH
T ss_pred CccceeCCCcCCHHH
Confidence 666666666665444
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=3.9e-12 Score=110.50 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=106.2
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
+..+.+++++++++.. +.. ..++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+
T Consensus 7 C~~~~l~~~~~~l~~~---------p~~--~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~- 69 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSV---------PTG--IPSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPD- 69 (177)
T ss_dssp EETTEEECCSSCCSSC---------CTT--CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT-
T ss_pred eCCCEEEecCCCCccC---------CCC--CCCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeCh-
Confidence 4567899999988762 221 2368999999999988633322 2457899999999999986332
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 407 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~ 407 (453)
..+. .+++|++|++++|+++. ..+..+..+++|+.|++++|.|+. +|. ..+..+++|+
T Consensus 70 -------~~~~---~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~ 127 (177)
T 2o6r_A 70 -------GVFD---KLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKS------VPD--GIFDRLTSLQ 127 (177)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred -------hHcc---CCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceE------eCH--HHhcCCcccC
Confidence 2233 67899999999999996 233456789999999999999986 442 3467789999
Q ss_pred EEEccCCCCChhh--HHHHHHHHhc
Q 012930 408 ELYLENCELSGRG--VSQLLDTLST 430 (453)
Q Consensus 408 ~L~L~~n~l~~~~--~~~l~~~l~~ 430 (453)
+|++++|.++... ...+...+..
T Consensus 128 ~L~l~~N~~~~~~~~l~~l~~~~~~ 152 (177)
T 2o6r_A 128 KIWLHTNPWDCSCPRIDYLSRWLNK 152 (177)
T ss_dssp EEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred EEEecCCCeeccCccHHHHHHHHhh
Confidence 9999999987643 3444455554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=6.3e-12 Score=110.92 Aligned_cols=126 Identities=23% Similarity=0.262 Sum_probs=90.6
Q ss_pred cEEEcCCCCCChhHHHHHHHHhhccccCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHH
Q 012930 219 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 298 (453)
Q Consensus 219 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 298 (453)
+.++++++.++ ..+..+ ..+|++|++++|.++. ++..+..+++|++|+|++|.+++..+.
T Consensus 13 ~~l~~~~~~l~-~ip~~~----------~~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI----------PRDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTSCCS-SCCSCC----------CTTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCCCCC-cCCCCC----------CCCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHh
Confidence 57788888776 222111 3678888888888875 445677888888888888888764333
Q ss_pred HHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEE
Q 012930 299 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEIL 377 (453)
Q Consensus 299 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L 377 (453)
.+ ..+++|++|+|++|.+++..+ ..+. .+++|++|+|++|.|+. ++. .+..+++|+.|
T Consensus 73 ~f-----~~l~~L~~L~Ls~N~l~~i~~--------~~f~---~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 73 SF-----SNMTQLLTLILSYNRLRCIPP--------RTFD---GLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHL 131 (193)
T ss_dssp TT-----TTCTTCCEEECCSSCCCBCCT--------TTTT---TCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEE
T ss_pred Hc-----cCCCCCCEEECCCCccCEeCH--------HHhC---CCCCCCEEECCCCCCCe-----eChhhhhcCccccEE
Confidence 22 456888888888888886433 3333 67888888888888886 343 57778888888
Q ss_pred eCCCCCCC
Q 012930 378 DISDNTIE 385 (453)
Q Consensus 378 ~Ls~N~i~ 385 (453)
++++|++.
T Consensus 132 ~L~~N~~~ 139 (193)
T 2wfh_A 132 AIGANPLY 139 (193)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCee
Confidence 88888874
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.1e-11 Score=107.76 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=59.1
Q ss_pred cceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccc
Q 012930 248 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 327 (453)
Q Consensus 248 ~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 327 (453)
.+|+.|++++|.++. .....+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~- 93 (177)
T 2o6r_A 28 SSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLTILYLHENKLQSLPN- 93 (177)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCcEEEeCCCcccE--------eCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccCEEECCCCCccccCH-
Confidence 456666666666654 22233455666666666666665422211 1335666666666666664222
Q ss_pred cCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCCh
Q 012930 328 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~ 386 (453)
..+. .+++|++|++++|.++. ++. .+..+++|+.|++++|+++.
T Consensus 94 -------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 94 -------GVFD---KLTQLKELALDTNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -------TTTT---TCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -------HHhh---CCcccCEEECcCCcceE-----eCHHHhcCCcccCEEEecCCCeec
Confidence 1122 45566666666666654 222 34556666666666666653
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=1.4e-13 Score=133.31 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=135.7
Q ss_pred eeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHH-HHHHHHhhccccCC
Q 012930 169 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV-EGICRSLCSKRKRI 247 (453)
Q Consensus 169 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l~~~L~~~~~~~ 247 (453)
.++.+++.++++|..+ ..++++|+|++|++....... +.++++|++|+|++|.+....+ .++.. +
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--------L 78 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSN--------L 78 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTSBCS--------C
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhHhhc--------c
Confidence 3444455555555433 257889999998876443222 5678899999999998754322 12211 3
Q ss_pred ccee-EEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCC-CCCCcc
Q 012930 248 HKIE-NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWL 325 (453)
Q Consensus 248 ~~L~-~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~ 325 (453)
.+++ .+.+..|+++. ..+..+..+++|++|++++|++........ ....++..|+++++ .+....
T Consensus 79 ~~l~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK-----IHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TTCCEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCTT-----CCBSSCEEEEEESCTTCCEEC
T ss_pred hhhhhhhcccCCcccc--------cCchhhhhccccccccccccccccCCchhh-----cccchhhhhhhcccccccccc
Confidence 4444 45666778776 234567788899999999998865222111 22356778888654 455321
Q ss_pred cccCcCchHHhhcCCCCC-CcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCC-CCCChhHHHhHHHHHHhhcCCC
Q 012930 326 SKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERC 403 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~l~~~ 403 (453)
+ ..+. .+ ..+++|+|++|+|+. ++.......+|+.|++++ |.++. +|. .++..+
T Consensus 146 ~--------~~f~---~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~------i~~--~~f~~l 201 (350)
T 4ay9_X 146 R--------NSFV---GLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEE------LPN--DVFHGA 201 (350)
T ss_dssp T--------TSST---TSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCC------CCT--TTTTTE
T ss_pred c--------cchh---hcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccC------CCH--HHhccC
Confidence 1 1112 22 358889999998886 555555667888998875 67766 553 456777
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 404 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 404 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
++|++|+|++|+|+.. +... -..|++|.+.++.
T Consensus 202 ~~L~~LdLs~N~l~~l-----p~~~---~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 202 SGPVILDISRTRIHSL-----PSYG---LENLKKLRARSTY 234 (350)
T ss_dssp ECCSEEECTTSCCCCC-----CSSS---CTTCCEEECTTCT
T ss_pred cccchhhcCCCCcCcc-----Chhh---hccchHhhhccCC
Confidence 8899999999988873 3211 1237777765543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.7e-13 Score=121.52 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=62.9
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
+++|++|++++|.++. ++ .+..+++|++|++++|.+.. .+..+. .+++|++|++++|.+++
T Consensus 47 l~~L~~L~ls~n~l~~---------l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~-----~~~~L~~L~L~~N~l~~--- 107 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK---------IS-SLSGMENLRILSLGRNLIKK-IENLDA-----VADTLEELWISYNQIAS--- 107 (198)
T ss_dssp TTTCSEEECSEEEESC---------CC-CHHHHTTCCEEEEEEEEECS-CSSHHH-----HHHHCSEEEEEEEECCC---
T ss_pred CCCCCEEECCCCCCcc---------cc-ccccCCCCCEEECCCCCccc-ccchhh-----cCCcCCEEECcCCcCCc---
Confidence 3566666666666655 22 34455667777777776653 332221 13567777777777665
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
++ .+. .+++|++|++++|++++.+ ....+..+++|+.|++++|++++
T Consensus 108 ------l~-~~~---~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 108 ------LS-GIE---KLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ------HH-HHH---HHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHH
T ss_pred ------CC-ccc---cCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCcccc
Confidence 33 333 4466777777777776521 01356667777777777776654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1.7e-11 Score=117.56 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCcc-EEeCCCCCC
Q 012930 307 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLE-ILDISDNTI 384 (453)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~-~L~Ls~N~i 384 (453)
.+++|+.++|++|.++.... ..|.+|.+|+.++|.+| ++. ++ .+|..+++|+ .+++.+ .+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~-----------~aF~~~~~L~~l~l~~n-i~~-----I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD-----------FTFAQKKYLLKIKLPHN-LKT-----IGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT-----------TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCTTCCEEEEECT-TC
T ss_pred hcCCCeEEECCCCCcceecH-----------hhhhCCCCCCEEECCcc-cce-----ehHHHhhCChhccEEEEEcc-cc
Confidence 36899999999988875333 33447889999999887 664 33 4678889999 999987 55
Q ss_pred ChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEEC
Q 012930 385 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 440 (453)
Q Consensus 385 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 440 (453)
+. ++. .++..|++|+.+++++|.++..+ ..++.. .++|+.|+.
T Consensus 286 ~~------I~~--~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~-~~~L~~ly~ 328 (329)
T 3sb4_A 286 TA------IEF--GAFMGCDNLRYVLATGDKITTLG----DELFGN-GVPSKLIYK 328 (329)
T ss_dssp CE------ECT--TTTTTCTTEEEEEECSSCCCEEC----TTTTCT-TCCCCEEEC
T ss_pred eE------Ech--hhhhCCccCCEEEeCCCccCccc----hhhhcC-Ccchhhhcc
Confidence 54 322 56888899999999999887753 234444 455887763
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.08 E-value=1.1e-10 Score=99.97 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCCh
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIED 386 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~ 386 (453)
..|+.||+++|.|++.+. ..+.+|++|++|+|++| +|++.|++.+...-..+++|++|+|++| +|||
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHH-----------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468899999988887433 33447889999999999 6999887776531111357999999997 4999
Q ss_pred hHHHhHHHHHHhhcCCCCCccEEEccCCC-CChhh
Q 012930 387 DGIRSLIPYFVQASERCNPLVELYLENCE-LSGRG 420 (453)
Q Consensus 387 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~~ 420 (453)
.|+..+ ..+++|++|++++|. +|+.|
T Consensus 130 ~Gl~~L--------~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 130 KGIIAL--------HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHHHHG--------GGCTTCCEEEEESCTTCCCHH
T ss_pred HHHHHH--------hcCCCCCEEECCCCCCCCchH
Confidence 987766 235899999999995 88865
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=9.7e-11 Score=101.00 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=67.0
Q ss_pred ccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhH
Q 012930 282 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 361 (453)
Q Consensus 282 L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~ 361 (453)
.+.+++++|.++. .|..+ ..+|++|+|++|.|++..+ ..+. .+++|++|+|++|+|+.
T Consensus 11 ~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~--- 68 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEP--------GVFD---RLTQLTRLDLDNNQLTV--- 68 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCSEEECCSSCCCC---
T ss_pred CCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccCh--------hhhc---CcccCCEEECCCCCcCc---
Confidence 4556666665554 33222 3566667777766665322 2333 55667777777776664
Q ss_pred HHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChh--hHHHHHHHHhc
Q 012930 362 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST 430 (453)
Q Consensus 362 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~ 430 (453)
..+..+..+++|+.|+|++|+|+. +|. ..+..+++|++|+|++|.++.. ....+...+..
T Consensus 69 -l~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 69 -LPAGVFDKLTQLTQLSLNDNQLKS------IPR--GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred -cChhhccCCCCCCEEECCCCccCE------eCH--HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 122244566777777777777765 331 3355667777777777766544 23444444544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=8.2e-11 Score=101.44 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=86.8
Q ss_pred CCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhH
Q 012930 309 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 388 (453)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 388 (453)
+..+.+++++|.++. +|..+. .+|++|+|++|+|+. ..+..+..+++|+.|+|++|+|+.
T Consensus 9 C~~~~l~~s~n~l~~---------ip~~~~-----~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~-- 68 (170)
T 3g39_A 9 CSGTTVDCSGKSLAS---------VPTGIP-----TTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTV-- 68 (170)
T ss_dssp EETTEEECTTSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCC--
T ss_pred cCCCEEEeCCCCcCc---------cCccCC-----CCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCc--
Confidence 357899999999986 333332 689999999999997 336678899999999999999987
Q ss_pred HHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 012930 389 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 389 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+|. ..+..+++|++|+|++|+|+.. ....+..+ ++|++|+|++|.+...
T Consensus 69 ----l~~--~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 69 ----LPA--GVFDKLTQLTQLSLNDNQLKSI----PRGAFDNL-KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ----CCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTTTC-TTCCEEECCSSCBCTT
T ss_pred ----cCh--hhccCCCCCCEEECCCCccCEe----CHHHhcCC-CCCCEEEeCCCCCCCC
Confidence 442 4567889999999999999874 22346663 5699999999998754
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2.2e-10 Score=99.15 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=60.8
Q ss_pred cEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHH
Q 012930 283 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR 362 (453)
Q Consensus 283 ~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~ 362 (453)
+.+++++|.++. .|..+ ..+|++|+|++|.|++..+ ..+. .+++|++|+|++|+|+.
T Consensus 15 ~~l~~~~n~l~~-iP~~~-------~~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~---- 71 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGI-------PTDKQRLWLNNNQITKLEP--------GVFD---HLVNLQQLYFNSNKLTA---- 71 (174)
T ss_dssp SEEECCSSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TTTT---TCTTCCEEECCSSCCCC----
T ss_pred cEEEeCCCCCCc-cCCCc-------CCCCcEEEeCCCCccccCH--------HHhc---CCcCCCEEECCCCCCCc----
Confidence 456666666543 33322 3566667777666665322 2333 55667777777776665
Q ss_pred HHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCCh
Q 012930 363 DLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 418 (453)
Q Consensus 363 ~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 418 (453)
++. .+..+++|+.|+|++|+|+. +|. ..+..+++|++|+|++|.+..
T Consensus 72 -i~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 72 -IPTGVFDKLTQLTQLDLNDNHLKS------IPR--GAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCSEEECCSSCBCT
T ss_pred -cChhHhCCcchhhEEECCCCccce------eCH--HHhccccCCCEEEeCCCCccc
Confidence 333 34566777777777777665 331 335566677777777776654
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.1e-10 Score=99.23 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=85.6
Q ss_pred CCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHH
Q 012930 310 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 389 (453)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~ 389 (453)
.-+.+++++|.++. +|..+. .+|++|+|++|+|+. ..+..+..+++|+.|+|++|+|+.
T Consensus 13 ~~~~l~~~~n~l~~---------iP~~~~-----~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~--- 71 (174)
T 2r9u_A 13 DQTLVNCQNIRLAS---------VPAGIP-----TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTA--- 71 (174)
T ss_dssp CSSEEECCSSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC---
T ss_pred CCcEEEeCCCCCCc---------cCCCcC-----CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCc---
Confidence 45789999999875 334333 789999999999997 346678899999999999999987
Q ss_pred HhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHH-HHhcCCCCCcEEECcCCCCCcc
Q 012930 390 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD-TLSTLRRPPTSLSIADNNLGRF 448 (453)
Q Consensus 390 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~ 448 (453)
+|. ..+..+++|++|+|++|+|+.. +. .+..+ ++|++|+|++|.+...
T Consensus 72 ---i~~--~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~~l-~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 72 ---IPT--GVFDKLTQLTQLDLNDNHLKSI-----PRGAFDNL-KSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ---CCT--TTTTTCTTCCEEECCSSCCCCC-----CTTTTTTC-TTCSEEECCSSCBCTT
T ss_pred ---cCh--hHhCCcchhhEEECCCCcccee-----CHHHhccc-cCCCEEEeCCCCcccc
Confidence 552 4467889999999999999873 33 36663 5699999999998754
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=7.4e-10 Score=106.10 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCcccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCcc-EEEccCCCCChhh
Q 012930 343 LQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV-ELYLENCELSGRG 420 (453)
Q Consensus 343 ~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~-~L~L~~n~l~~~~ 420 (453)
|++|+.++|++|+++. ++. +|..+++|+.|++.+| ++. ++. .++..+.+|+ .+++.+ .++..+
T Consensus 225 ~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~------I~~--~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKT------IGQ--RVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCEEEEECT-TCCEEC
T ss_pred cCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cce------ehH--HHhhCChhccEEEEEcc-cceEEc
Confidence 6789999999998886 444 6888999999999988 655 332 6688889999 999988 666542
Q ss_pred HHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 012930 421 VSQLLDTLSTLRRPPTSLSIADNNLGRFC 449 (453)
Q Consensus 421 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 449 (453)
..++.. ..+|+.|++++|.++.-+
T Consensus 290 ----~~aF~~-c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 290 ----FGAFMG-CDNLRYVLATGDKITTLG 313 (329)
T ss_dssp ----TTTTTT-CTTEEEEEECSSCCCEEC
T ss_pred ----hhhhhC-CccCCEEEeCCCccCccc
Confidence 245555 466999999998886533
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.75 E-value=7.6e-09 Score=88.50 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=21.7
Q ss_pred cccEEEecCC-CCChhhHHHHHHHHhCCCCccEEeCCCC-CCChhH
Q 012930 345 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDG 388 (453)
Q Consensus 345 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g 388 (453)
+|++|+|++| +||+.|+.. +..+++|+.|+++++ .+++.|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~----L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA----LHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH----GGGCTTCCEEEEESCTTCCCHH
T ss_pred CCCEEEcCCCCcCCHHHHHH----HhcCCCCCEEECCCCCCCCchH
Confidence 4555666655 366655443 234566666666654 355554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=8.3e-09 Score=99.41 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=85.6
Q ss_pred cEEEcCCC-CCChhHHHHHHHHHhhCCCCCCEEEcCC-CCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCChhh
Q 012930 283 CSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 360 (453)
Q Consensus 283 ~~L~L~~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~ 360 (453)
..++++++ .+.. .|. + ..+++|++|+|++ |.+++..+ ..+. .+++|++|+|++|+|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l-----~~~~~L~~L~l~~~n~l~~~~~--------~~~~---~l~~L~~L~l~~N~l~~-- 70 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-L-----PGAENLTELYIENQQHLQHLEL--------RDLR---GLGELRNLTIVKSGLRF-- 70 (347)
T ss_dssp SCEECCSSCCCTT-TTT-S-----CSCSCCSEEECCSCSSCCEECG--------GGSC---SCCCCSEEECCSSCCCE--
T ss_pred CEEEcCCCCCCCc-cCC-C-----CCCCCeeEEEccCCCCCCCcCh--------hHhc---cccCCCEEECCCCccce--
Confidence 46788888 8876 665 4 4568899999996 99986433 3444 78999999999999997
Q ss_pred HHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh-HHHHHHHHh
Q 012930 361 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLS 429 (453)
Q Consensus 361 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~ 429 (453)
..+.+|..+++|+.|+|++|+|+. +|. ..+..++ |+.|+|++|.+.... ...+...+.
T Consensus 71 --~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 71 --VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp --ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred --eCHHHhcCCcCCCEEeCCCCccce------eCH--HHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence 345578899999999999999986 542 3344444 999999999987532 233444443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=2.1e-08 Score=96.58 Aligned_cols=105 Identities=21% Similarity=0.115 Sum_probs=81.5
Q ss_pred eEEEccCC-CCCCCCchhhHHHHHHhhcCCCCccEEEcCC-CCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccccc
Q 012930 251 ENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 328 (453)
Q Consensus 251 ~~L~L~~n-~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 328 (453)
..++.+++ +++. ++. +..+++|++|+|++ |.+....+..+ ..+++|+.|+|++|.|++..+
T Consensus 11 ~~v~~~~~n~l~~---------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~-- 73 (347)
T 2ifg_A 11 SGLRCTRDGALDS---------LHH-LPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKSGLRFVAP-- 73 (347)
T ss_dssp SCEECCSSCCCTT---------TTT-SCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSSCCCEECT--
T ss_pred CEEEcCCCCCCCc---------cCC-CCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCCccceeCH--
Confidence 46788887 7776 666 88899999999996 99987443333 568999999999999997544
Q ss_pred CcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCCh
Q 012930 329 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 386 (453)
Q Consensus 329 ~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 386 (453)
..+. .+++|+.|+|++|+|+. ++..+.....|+.|+|++|.+.-
T Consensus 74 ------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 ------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp ------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred ------HHhc---CCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 4555 67899999999999986 55433333349999999999873
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=2.3e-09 Score=105.35 Aligned_cols=223 Identities=10% Similarity=0.073 Sum_probs=134.5
Q ss_pred ccceeccccccchHHHhhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhcccc
Q 012930 166 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 245 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~ 245 (453)
.++.+.+.+. +..+....+..++|+.+.+..+ +..... ..+.+|++|+.++|++|.++.....++.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~l~l~~n~l~~I~~~aF~-------- 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPST-LEQLKE----DIFYYCYNLKKADLSKTKITKLPASTFV-------- 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCTT-CCEECS----STTTTCTTCCEEECTTSCCSEECTTTTT--------
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCCC-ccEehH----HHhhCcccCCeeecCCCcceEechhhEe--------
Confidence 5666666554 3334444444467888888652 221111 1256788899999988877765555543
Q ss_pred CCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcc
Q 012930 246 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 325 (453)
Q Consensus 246 ~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 325 (453)
+.+|+.+.+..+ +.. .-..++.+|++|+.+++..+ +..-.... +.. ++|+.+.+.. .++...
T Consensus 202 -~~~L~~l~lp~~-l~~--------I~~~aF~~~~~L~~l~l~~~-l~~I~~~a-----F~~-~~L~~i~lp~-~i~~I~ 263 (401)
T 4fdw_A 202 -YAGIEEVLLPVT-LKE--------IGSQAFLKTSQLKTIEIPEN-VSTIGQEA-----FRE-SGITTVKLPN-GVTNIA 263 (401)
T ss_dssp -TCCCSEEECCTT-CCE--------ECTTTTTTCTTCCCEECCTT-CCEECTTT-----TTT-CCCSEEEEET-TCCEEC
T ss_pred -ecccCEEEeCCc-hhe--------ehhhHhhCCCCCCEEecCCC-ccCccccc-----ccc-CCccEEEeCC-CccEEC
Confidence 377888888754 443 12245678888999998875 32211111 233 6788888843 344322
Q ss_pred cccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 326 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 326 ~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
. ..|.+|.+|+.+++.+|.+.......+ ..++..|++|+.+++.. .++. ++. .++..|+
T Consensus 264 ~-----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~------I~~--~aF~~c~ 323 (401)
T 4fdw_A 264 S-----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI------LGQ--GLLGGNR 323 (401)
T ss_dssp T-----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE------ECT--TTTTTCC
T ss_pred h-----------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE------Ehh--hhhcCCC
Confidence 2 334477888888888876541111112 23677888888888884 4554 222 5577778
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 447 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 447 (453)
+|+.+.+..+ ++..+ ..++.. . +|+.+++++|.+..
T Consensus 324 ~L~~l~lp~~-l~~I~----~~aF~~-~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQIN----FSAFNN-T-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SCCEEEECTT-CCEEC----TTSSSS-S-CCCEEEECCSSCCB
T ss_pred CccEEEECcc-ccEEc----HHhCCC-C-CCCEEEEcCCCCcc
Confidence 8888888655 44432 223444 3 58888888876543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=2.1e-06 Score=78.82 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=23.0
Q ss_pred hCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCCh
Q 012930 306 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 358 (453)
Q Consensus 306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~ 358 (453)
.++++|+.|+|++|.|++... ++..+. .+++|+.|+|++|+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~------l~~~~~---~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG------GTTHHH---HSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCcc------chhHHh---hCCCCCEEECCCCccCC
Confidence 445677777777777665211 222222 33455555555555554
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.10 E-value=1.5e-07 Score=92.45 Aligned_cols=223 Identities=8% Similarity=-0.002 Sum_probs=138.4
Q ss_pred ccceeccccccchHHH-hhhhcCCCccEEEeccccChHHHHHHHHHHHhcCCCccEEEcCCCCCChhHHHHHHHHhhccc
Q 012930 166 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 244 (453)
Q Consensus 166 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~ 244 (453)
.++.+.+.+. +..+. ..+.+|.+|+.++|+.|.+....... +. +.+|+++.|..+ +...+..++..
T Consensus 158 ~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~------ 224 (401)
T 4fdw_A 158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLK------ 224 (401)
T ss_dssp CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTT------
T ss_pred CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhC------
Confidence 5666766652 22233 34567799999999988755443322 22 578999999855 55444444443
Q ss_pred cCCcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCc
Q 012930 245 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 324 (453)
Q Consensus 245 ~~~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 324 (453)
|.+|+.+.+..+ ++..+ ..++.+ .+|+.+.+.++ +..-.. ..+..+.+|+.+++.+|.+...
T Consensus 225 --~~~L~~l~l~~~-l~~I~--------~~aF~~-~~L~~i~lp~~-i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 225 --TSQLKTIEIPEN-VSTIG--------QEAFRE-SGITTVKLPNG-VTNIAS-----RAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp --CTTCCCEECCTT-CCEEC--------TTTTTT-CCCSEEEEETT-CCEECT-----TTTTTCTTCCEEEEESSCCCCC
T ss_pred --CCCCCEEecCCC-ccCcc--------cccccc-CCccEEEeCCC-ccEECh-----hHhhCCCCCCEEEeCCccccCC
Confidence 678999999875 33311 123334 68999999554 333111 1245678999999988876411
Q ss_pred ccccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCC
Q 012930 325 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 404 (453)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~ 404 (453)
.. ..++. ..|.+|.+|+.+++.+ .++.-+ ..++..|++|+.++|..| ++. ++. .++..+
T Consensus 287 ~~----~~I~~--~aF~~c~~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~------I~~--~aF~~~- 345 (401)
T 4fdw_A 287 PE----AMIHP--YCLEGCPKLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQ------INF--SAFNNT- 345 (401)
T ss_dssp TT----CEECT--TTTTTCTTCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCE------ECT--TSSSSS-
T ss_pred cc----cEECH--HHhhCCccCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccE------EcH--HhCCCC-
Confidence 00 00001 3344788999999984 465411 236778899999999665 544 221 557777
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCCCcEEECcCCC
Q 012930 405 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 444 (453)
Q Consensus 405 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 444 (453)
+|+.+++.+|.+.... ...+..++..++.|.+..+.
T Consensus 346 ~L~~l~l~~n~~~~l~----~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVF----EKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCEEEECCSSCCBCC----CSSCCCSCTTCCEEEECGGG
T ss_pred CCCEEEEcCCCCcccc----cccccCCCCCccEEEeCHHH
Confidence 9999999999866531 22344444567888876654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=9.6e-06 Score=74.41 Aligned_cols=86 Identities=34% Similarity=0.441 Sum_probs=61.0
Q ss_pred cCCCCccEEEcCCCCCCh--hHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930 277 SSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 354 (453)
Q Consensus 277 ~~~~~L~~L~L~~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n 354 (453)
.++++|+.|+|++|.+.+ ..+..+ ..+++|+.|+|++|.|++. ..+..+..+ +|++|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-----~~l~~L~~L~Ls~N~i~~~----------~~l~~l~~l-~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-----QKAPNLKILNLSGNELKSE----------RELDKIKGL-KLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-----HHSTTCCEEECTTSCCCSG----------GGGGGGTTS-CCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-----hhCCCCCEEECCCCccCCc----------hhhhhcccC-CcceEEccCC
Confidence 568899999999998876 222222 2368999999999999873 234444344 8999999999
Q ss_pred CCChh---hHHHHHHHHhCCCCccEEe
Q 012930 355 NLCKA---DARDLGSALVHIPNLEILD 378 (453)
Q Consensus 355 ~l~~~---~~~~l~~~l~~~~~L~~L~ 378 (453)
.+... .-......+..+|+|+.||
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCccccCcchhHHHHHHHHCcccCeEC
Confidence 98751 1113445677888888887
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.29 E-value=0.007 Score=48.75 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=16.0
Q ss_pred cccEEEecCCCCChhhHHHHHH-HHhCCCCccEEeCCCCCC
Q 012930 345 SLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTI 384 (453)
Q Consensus 345 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i 384 (453)
+|++|+|++|+|+. ++. .+..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCe
Confidence 34455555554443 222 334444555555555544
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.89 E-value=0.002 Score=62.67 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhh
Q 012930 342 SLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 420 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 420 (453)
.+.+|+.+.+..+ ++. + ..++..+.+|+.+++..+ ++. ++. .++..|.+|+.+.+..+ ++..|
T Consensus 295 ~~~~L~~i~l~~~-i~~-----I~~~aF~~c~~L~~i~lp~~-v~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKF-----IGEEAFESCTSLVSIDLPYL-VEE------IGK--RSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TCTTCCEEEECTT-CCE-----ECTTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccc-cce-----echhhhcCCCCCCEEEeCCc-ccE------EhH--HhccCCCCCCEEEECcc-ccEeh
Confidence 5566777776554 332 2 124666777777777543 333 211 44666677777777655 44432
Q ss_pred HHHHHHHHhcCCCCCcEEECcCC
Q 012930 421 VSQLLDTLSTLRRPPTSLSIADN 443 (453)
Q Consensus 421 ~~~l~~~l~~~~~~L~~L~Ls~N 443 (453)
..++.. ..+|+.+++..+
T Consensus 359 ----~~aF~~-C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ----ANAFQG-CINLKKVELPKR 376 (394)
T ss_dssp ----TTTBTT-CTTCCEEEEEGG
T ss_pred ----HHHhhC-CCCCCEEEECCC
Confidence 123333 345777776543
No 159
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=94.74 E-value=0.017 Score=38.14 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=18.6
Q ss_pred hhhccCchHHHHHHHhcCChhhh
Q 012930 18 PYVYELPADLFDILLTCLPPLAL 40 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l 40 (453)
+.+..||.|++..||++||+..+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl 29 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPEL 29 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGH
T ss_pred CCHHHCCHHHHHHHHHcCCHHHH
Confidence 56789999999999999996555
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.51 E-value=0.0073 Score=58.65 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=65.5
Q ss_pred hcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCC
Q 012930 276 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN 355 (453)
Q Consensus 276 l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~ 355 (453)
+..+..++.+....+.+.+. .+..+.+|+.+.+..+ +...+. ..+.+|.+|+.+++..+
T Consensus 272 F~~~~~l~~~~~~~~~i~~~--------~F~~~~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEK--------TFYGCSSLTEVKLLDS-VKFIGE-----------EAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp TTTCTTCCEEEECSSEECTT--------TTTTCTTCCEEEECTT-CCEECT-----------TTTTTCTTCCEECCCTT-
T ss_pred cccccccceeccCceeeccc--------cccccccccccccccc-cceech-----------hhhcCCCCCCEEEeCCc-
Confidence 33455555555554433321 1234677888887654 332211 23447889999999754
Q ss_pred CChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCC
Q 012930 356 LCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 414 (453)
Q Consensus 356 l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 414 (453)
++. + ..++..|.+|+.+++..| ++. ++. .++..|.+|+.+++..+
T Consensus 331 v~~-----I~~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEE-----IGKRSFRGCTSLSNINFPLS-LRK------IGA--NAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCE-----ECTTTTTTCTTCCEECCCTT-CCE------ECT--TTBTTCTTCCEEEEEGG
T ss_pred ccE-----EhHHhccCCCCCCEEEECcc-ccE------ehH--HHhhCCCCCCEEEECCC
Confidence 443 3 246888999999999876 544 221 56888899999999765
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.45 E-value=0.041 Score=53.27 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=78.1
Q ss_pred hhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCC
Q 012930 275 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 354 (453)
Q Consensus 275 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n 354 (453)
++.++..|+.+.+.++... +....+.++..|+.+.+.. .++..+. ..|.+|.+|+.+++..+
T Consensus 260 aF~~c~~L~~i~lp~~~~~------I~~~aF~~c~~L~~i~l~~-~i~~I~~-----------~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS------IGTGAFMNCPALQDIEFSS-RITELPE-----------SVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE------ECTTTTTTCTTCCEEECCT-TCCEECT-----------TTTTTCTTCCEEECCTT
T ss_pred eeeecccccEEecccccce------ecCcccccccccccccCCC-cccccCc-----------eeecCCCCcCEEEeCCc
Confidence 5667888999988766431 1112235578899999864 3432221 33447899999999765
Q ss_pred CCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccCCCCChhhHHHHHHHHhcCCC
Q 012930 355 NLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 433 (453)
Q Consensus 355 ~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 433 (453)
++. + ..++..|.+|+.+.+..+ ++. ++. .++.+|.+|+.+++.++.. ...++.. ..
T Consensus 322 -v~~-----I~~~aF~~C~~L~~i~ip~s-v~~------I~~--~aF~~C~~L~~i~~~~~~~-------~~~~~~~-~~ 378 (394)
T 4gt6_A 322 -ITQ-----ILDDAFAGCEQLERIAIPSS-VTK------IPE--SAFSNCTALNNIEYSGSRS-------QWNAIST-DS 378 (394)
T ss_dssp -CCE-----ECTTTTTTCTTCCEEEECTT-CCB------CCG--GGGTTCTTCCEEEESSCHH-------HHHTCBC-CC
T ss_pred -ccE-----ehHhHhhCCCCCCEEEECcc-cCE------EhH--hHhhCCCCCCEEEECCcee-------ehhhhhc-cC
Confidence 433 2 236888999999999754 433 211 5688899999999988742 1234444 56
Q ss_pred CCcEEECcCCCC
Q 012930 434 PPTSLSIADNNL 445 (453)
Q Consensus 434 ~L~~L~Ls~N~l 445 (453)
.|+.+.+..|.+
T Consensus 379 ~L~~i~i~~~~~ 390 (394)
T 4gt6_A 379 GLQNLPVAPGSI 390 (394)
T ss_dssp CC----------
T ss_pred CCCEEEeCCCCE
Confidence 699998877654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.03 E-value=0.037 Score=53.53 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=75.6
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
|..|+.+.+..+...- -..++.++++|+.+.+..+ +.. . ....+..+.+|+.++|..+ ++..+.
T Consensus 264 c~~L~~i~lp~~~~~I---------~~~aF~~c~~L~~i~l~~~-i~~-I----~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSI---------GTGAFMNCPALQDIEFSSR-ITE-L----PESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp CSSCCEEECCTTCCEE---------CTTTTTTCTTCCEEECCTT-CCE-E----CTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred cccccEEeccccccee---------cCcccccccccccccCCCc-ccc-c----CceeecCCCCcCEEEeCCc-ccEehH
Confidence 5677788776543211 1235668899999999753 332 1 1122456789999999765 432222
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHH-HHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCC
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 405 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~ 405 (453)
..|.+|.+|+.+.+..+ ++. + ..++..|.+|+.+++.++... . .++..+..
T Consensus 328 -----------~aF~~C~~L~~i~ip~s-v~~-----I~~~aF~~C~~L~~i~~~~~~~~-------~----~~~~~~~~ 379 (394)
T 4gt6_A 328 -----------DAFAGCEQLERIAIPSS-VTK-----IPESAFSNCTALNNIEYSGSRSQ-------W----NAISTDSG 379 (394)
T ss_dssp -----------TTTTTCTTCCEEEECTT-CCB-----CCGGGGTTCTTCCEEEESSCHHH-------H----HTCBCCCC
T ss_pred -----------hHhhCCCCCCEEEECcc-cCE-----EhHhHhhCCCCCCEEEECCceee-------h----hhhhccCC
Confidence 34448899999999765 443 2 246889999999999987432 2 34667788
Q ss_pred ccEEEccCCCC
Q 012930 406 LVELYLENCEL 416 (453)
Q Consensus 406 L~~L~L~~n~l 416 (453)
|+.+.+..+.+
T Consensus 380 L~~i~i~~~~~ 390 (394)
T 4gt6_A 380 LQNLPVAPGSI 390 (394)
T ss_dssp C----------
T ss_pred CCEEEeCCCCE
Confidence 99988876643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.42 E-value=0.047 Score=43.79 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=40.9
Q ss_pred cEEEcCCCCCC-hhHHHHHHHHHhhCCCCCCEEEcCCCCCCCcccccCcCchHHhhcCCCCCCcccEEEecCCCCC-hhh
Q 012930 283 CSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC-KAD 360 (453)
Q Consensus 283 ~~L~L~~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~-~~~ 360 (453)
..++.+++.++ ...|..+ ..+|+.|+|++|.|+.... ..+. .+++|++|+|++|.+. +-.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~--------~~f~---~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPP--------GLLD---ALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCT--------TTGG---GCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccCh--------hhhh---hccccCEEEecCCCeeccCc
Confidence 35677777765 1244333 4578888888888875322 2333 5677888888888664 222
Q ss_pred HHHHHHHHh
Q 012930 361 ARDLGSALV 369 (453)
Q Consensus 361 ~~~l~~~l~ 369 (453)
+..+...+.
T Consensus 73 l~~l~~wl~ 81 (130)
T 3rfe_A 73 LVPLRAWLA 81 (130)
T ss_dssp GHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333444444
No 164
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=92.50 E-value=0.14 Score=47.16 Aligned_cols=65 Identities=25% Similarity=0.255 Sum_probs=40.3
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccC----CchHHHHHHHhcccCC--CCC
Q 012930 18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYG----NFNTVWKKLFKTRWSG--FTD 91 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~~w~~~~~~~w~~--~~~ 91 (453)
..+..||+|++..||++||+..| ..+++.+||.| .....|++.+..++.. ...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L---------------------~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~ 107 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATEL---------------------VQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSA 107 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHH---------------------HHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC---
T ss_pred cChhhCCHHHHHHHHHcCCHHHH---------------------HHHHHHHhHHHHHHhcChHHHHHHhhccCccccccc
Confidence 56789999999999999998877 22333344443 2345577766555322 111
Q ss_pred CCCCchhHHHHH
Q 012930 92 QIEPVDWQQRYW 103 (453)
Q Consensus 92 ~~~~~~~~~~~~ 103 (453)
.....+|++.|.
T Consensus 108 ~~~~~~Wk~~y~ 119 (297)
T 2e31_A 108 DEERDHWQQFYF 119 (297)
T ss_dssp --CCSCHHHHHH
T ss_pred CCCCCChhhhhe
Confidence 114567999885
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.89 E-value=0.2 Score=47.85 Aligned_cols=59 Identities=10% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCCcccEEEecCCCCChhhHHHHHHHHhCCCCccEEeCCCCCCChhHHHhHHHHHHhhcCCCCCccEEEccC
Q 012930 342 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 413 (453)
Q Consensus 342 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~l~~~~~L~~L~L~~ 413 (453)
.|.+|+.+.+.++.++.-+ ..++..|.+|+.+.|..+ ++. ++. .++.+|.+|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPTA-LKT------IQV--YAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccceeh----hhhhcCCCCCCEEEcCcc-ccE------EHH--HHhhCCCCCCEEEECC
Confidence 5566666666665555311 224556666666666543 322 111 3455566666666543
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.79 E-value=0.12 Score=49.50 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=68.1
Q ss_pred CcceeEEEccCCCCCCCCchhhHHHHHHhhcCCCCccEEEcCCCCCChhHHHHHHHHHhhCCCCCCEEEcCCCCCCCccc
Q 012930 247 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 326 (453)
Q Consensus 247 ~~~L~~L~L~~n~l~~~~~~~i~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 326 (453)
+..|+.+.+..+ ++.. -..++.++.+|+.+.+..+ +.. .. ...+..+.+|+.+.+..+.++..+.
T Consensus 239 ~~~L~~i~lp~~-v~~I--------~~~aF~~~~~l~~i~l~~~-i~~-i~----~~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSI--------GSFLLQNCTALKTLNFYAK-VKT-VP----YLLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp CSSCCEEEECTT-CCEE--------CTTTTTTCTTCCEEEECCC-CSE-EC----TTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CccceEEEcCCC-ccEe--------Cccccceeehhcccccccc-cee-cc----ccccccccccccccccccccceehh
Confidence 567888887654 3331 1234567888999988765 322 11 1123557899999998887764333
Q ss_pred ccCcCchHHhhcCCCCCCcccEEEecCCCCChhhHHHHH-HHHhCCCCccEEeCCCC
Q 012930 327 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDN 382 (453)
Q Consensus 327 ~~~~~~l~~~l~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N 382 (453)
..|.+|.+|+.+.|..+ ++. ++ .++..|.+|+.+.+..+
T Consensus 304 -----------~aF~~c~~L~~i~lp~~-l~~-----I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 304 -----------RVFMDCVKLSSVTLPTA-LKT-----IQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp -----------TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCTTCCCCCCCTT
T ss_pred -----------hhhcCCCCCCEEEcCcc-ccE-----EHHHHhhCCCCCCEEEECCc
Confidence 34447899999999765 443 22 36888999999988654
No 167
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=77.08 E-value=0.98 Score=41.30 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred hhccCchHHHHHHHhcCChhhhhh
Q 012930 19 YVYELPADLFDILLTCLPPLALQK 42 (453)
Q Consensus 19 ~~~~lp~~~~~~i~~~l~~~~l~~ 42 (453)
.+.+||.|++..|+++|+|.-|-+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~ 27 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQ 27 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHH
Confidence 578899999999999999988733
No 168
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=76.10 E-value=1 Score=43.80 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.9
Q ss_pred hhhccCchHHHHHHHhcCChhhh
Q 012930 18 PYVYELPADLFDILLTCLPPLAL 40 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l 40 (453)
.++..||.|++..||++||+..|
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l 35 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDI 35 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHH
Confidence 56888999999999999998877
No 169
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=61.75 E-value=4.3 Score=39.08 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.7
Q ss_pred hhhccCchHHHHHHHhcCChhhhhh
Q 012930 18 PYVYELPADLFDILLTCLPPLALQK 42 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l~~ 42 (453)
.++..||.|++..||++|++.-|..
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~ 41 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQ 41 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHH
Confidence 5678899999999999999877743
No 170
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=58.56 E-value=3.1 Score=40.08 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred hhhccCchH----HHHHHHhcCChhhhh
Q 012930 18 PYVYELPAD----LFDILLTCLPPLALQ 41 (453)
Q Consensus 18 ~~~~~lp~~----~~~~i~~~l~~~~l~ 41 (453)
.++..||+| ++..||++||+..|.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~ 36 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLC 36 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHH
Confidence 567889999 999999999988873
No 171
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=24.38 E-value=1.1e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=31.0
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCCCCCccccccccccccCCchHHHHHHHhcccCCCCCCCCCch
Q 012930 18 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVD 97 (453)
Q Consensus 18 ~~~~~lp~~~~~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~w~~~~~~~~~~~ 97 (453)
|++.+..++=|.+|=.+-| .+.... ..-|++.+...++.... ....+
T Consensus 20 PVLek~tp~QL~~IE~~nP-----------------~L~~dT---------------deLWk~~c~rdF~~~~p-~e~es 66 (97)
T 4hfx_A 20 PVLERCTPDQLYRIEEYNH-----------------VLIEET---------------DQLWKVHCHRDFKEERP-EEYES 66 (97)
T ss_dssp CCGGGCCHHHHHHHHTC-----------------------CC---------------HHHHHHHC----CCSCC-CSSSC
T ss_pred HHHccCCHHHHHHHHHhCc-----------------ccchhh---------------HHHHHHHHHhHCcccCC-CCCCC
Confidence 7777777777777776655 221222 35699998888886654 45778
Q ss_pred hHHHHH
Q 012930 98 WQQRYW 103 (453)
Q Consensus 98 ~~~~~~ 103 (453)
|+++|.
T Consensus 67 WRelY~ 72 (97)
T 4hfx_A 67 WREMYL 72 (97)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999995
Done!