BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012932
         (453 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
 pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
           Aminotransferase From Burkholderia Pseudomallei
          Length = 328

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 90  SLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLD-DLPASFD 148
            ++VK ++    H   + V++VRA +S    NSI+ NQE   D  D    LD D   S  
Sbjct: 161 GIRVKTSSFTRHH---VNVSMVRAKASGWYVNSILANQEATADGYDEALLLDVDGYVSEG 217

Query: 149 VGEYIFV 155
            GE  F+
Sbjct: 218 SGENFFL 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,212,544
Number of Sequences: 62578
Number of extensions: 370584
Number of successful extensions: 728
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 3
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)