Query 012932
Match_columns 453
No_of_seqs 159 out of 210
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05817 Ribophorin_II: Oligos 100.0 1E-113 3E-118 931.5 45.6 431 1-447 203-636 (636)
2 KOG2447 Oligosaccharyltransfer 100.0 8.3E-69 1.8E-73 518.5 16.3 271 164-444 12-284 (287)
3 PF11797 DUF3324: Protein of u 69.9 26 0.00055 31.7 8.1 71 88-160 43-116 (140)
4 PF01544 CorA: CorA-like Mg2+ 66.8 6.4 0.00014 38.5 3.8 37 378-414 254-290 (292)
5 PRK09546 zntB zinc transporter 63.9 21 0.00045 36.4 7.0 12 378-389 284-295 (324)
6 TIGR00383 corA magnesium Mg(2+ 59.8 27 0.00059 35.1 7.0 23 364-389 267-289 (318)
7 TIGR02962 hdxy_isourate hydrox 59.3 46 0.001 29.3 7.4 64 90-158 2-66 (112)
8 PRK11085 magnesium/nickel/coba 59.2 21 0.00046 36.8 6.1 22 365-389 266-287 (316)
9 PRK15036 hydroxyisourate hydro 55.2 61 0.0013 29.5 7.7 65 88-158 26-91 (137)
10 cd05822 TLP_HIUase HIUase (5-h 54.8 56 0.0012 28.8 7.1 64 90-158 2-66 (112)
11 KOG2447 Oligosaccharyltransfer 50.4 2.6E+02 0.0057 28.6 11.8 107 331-445 163-282 (287)
12 COG2966 Uncharacterized conser 48.6 70 0.0015 32.0 7.6 24 338-361 110-133 (250)
13 COG0598 CorA Mg2+ and Co2+ tra 45.0 37 0.0008 34.8 5.2 44 365-413 272-315 (322)
14 PRK10669 putative cation:proto 38.6 59 0.0013 35.7 5.9 91 352-444 30-140 (558)
15 PF08400 phage_tail_N: Prophag 36.3 2.7E+02 0.0059 25.4 8.7 53 97-158 11-64 (134)
16 PF05751 FixH: FixH; InterPro 34.5 1.9E+02 0.0042 25.5 7.6 60 224-293 69-131 (146)
17 PF07608 DUF1571: Protein of u 33.1 1.3E+02 0.0027 29.7 6.4 41 222-262 13-56 (213)
18 PF13620 CarboxypepD_reg: Carb 32.6 63 0.0014 25.3 3.7 55 90-157 1-55 (82)
19 PF03699 UPF0182: Uncharacteri 31.9 2.7E+02 0.0058 32.5 9.8 93 355-448 161-271 (774)
20 TIGR00932 2a37 transporter, mo 31.4 1.2E+02 0.0026 29.7 6.3 37 408-444 91-127 (273)
21 PF13828 DUF4190: Domain of un 31.1 92 0.002 24.6 4.3 22 426-447 17-38 (62)
22 COG4420 Predicted membrane pro 30.7 1.2E+02 0.0025 29.4 5.6 42 361-406 57-99 (191)
23 PF13571 DUF4133: Domain of un 30.1 1.1E+02 0.0023 26.6 4.7 42 394-435 18-60 (96)
24 PF05915 DUF872: Eukaryotic pr 28.4 1.5E+02 0.0033 26.2 5.6 31 349-379 37-67 (115)
25 PF05751 FixH: FixH; InterPro 27.9 2.7E+02 0.0059 24.5 7.4 64 89-160 69-134 (146)
26 COG1086 Predicted nucleoside-d 27.2 2.9E+02 0.0063 31.1 8.7 54 395-448 58-111 (588)
27 PF11837 DUF3357: Domain of un 27.0 21 0.00045 31.0 0.0 40 334-373 6-48 (106)
28 PF06570 DUF1129: Protein of u 26.7 1.8E+02 0.0039 27.8 6.3 61 346-415 138-198 (206)
29 PRK00068 hypothetical protein; 25.9 5.8E+02 0.013 30.6 11.2 98 343-444 159-279 (970)
30 PF05568 ASFV_J13L: African sw 25.3 88 0.0019 29.1 3.7 35 417-451 25-59 (189)
31 PRK10263 DNA translocase FtsK; 24.8 1.8E+02 0.004 35.8 7.1 25 395-419 74-98 (1355)
32 smart00095 TR_THY Transthyreti 24.7 3.3E+02 0.0071 24.4 7.1 66 87-158 2-69 (121)
33 TIGR03061 pip_yhgE_Nterm YhgE/ 24.5 82 0.0018 28.7 3.4 43 340-388 2-47 (164)
34 PRK11281 hypothetical protein; 24.2 3.2E+02 0.007 33.3 9.0 46 406-451 702-754 (1113)
35 PF00576 Transthyretin: HIUase 24.1 91 0.002 27.4 3.4 65 91-159 3-68 (112)
36 TIGR00917 2A060601 Niemann-Pic 24.0 4.2E+02 0.0091 32.5 10.0 81 355-444 1046-1128(1204)
37 COG4125 Predicted membrane pro 23.9 2.2E+02 0.0048 26.3 5.9 52 394-447 83-134 (149)
38 PF05232 BTP: Bacterial Transm 23.7 2.7E+02 0.0058 22.2 5.8 41 394-434 9-49 (67)
39 PRK03659 glutathione-regulated 23.6 2E+02 0.0044 32.1 6.9 88 352-444 29-139 (601)
40 PRK03562 glutathione-regulated 22.6 2.4E+02 0.0051 31.8 7.2 89 351-444 28-139 (621)
41 TIGR03769 P_ac_wall_RPT actino 22.1 1.8E+02 0.004 21.0 4.1 18 148-165 11-28 (41)
42 PF02369 Big_1: Bacterial Ig-l 21.6 2.6E+02 0.0057 23.5 5.7 64 87-158 23-88 (100)
43 PF12794 MscS_TM: Mechanosensi 21.2 6.2E+02 0.013 26.2 9.5 49 404-452 212-267 (340)
44 COG2351 Transthyretin-like pro 20.7 2.2E+02 0.0048 25.7 5.1 65 89-158 9-74 (124)
No 1
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=100.00 E-value=1.2e-113 Score=931.52 Aligned_cols=431 Identities=38% Similarity=0.631 Sum_probs=408.3
Q ss_pred CccccCCcchhhhhhhhhhhccccccCCCCCChhHHHHHhhhhhccCCCCChhhHHHHHHHHHhhhcCCeeeceEEEccC
Q 012932 1 MREQQGPLATTSSVVRGLTAFSSVITESLNLTGDKILGIAKFFLGIGIPGDTKNFFDQVDSLACLENNRVSIPLILSLPS 80 (453)
Q Consensus 1 ~~~feggls~Ta~~v~g~~~l~~~~~k~~~i~~~q~~~~any~lsr~~v~s~k~a~~~~~al~~l~~n~~~~P~~~~l~~ 80 (453)
|+||||||++||++|+|+|+||++++|+|+|++||++||||||||||++|++||||++++||++|++|++++|+|+++++
T Consensus 203 ~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~v~s~k~a~~l~~al~~L~~N~~~~Pv~i~l~~ 282 (636)
T PF05817_consen 203 YLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRSVQSPKDAFNLLEALKSLSSNKFHVPVVISLES 282 (636)
T ss_pred ceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhCCccccEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEee
Q 012932 81 TVISLTKKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLV 160 (453)
Q Consensus 81 ~~~~~~~~~~l~v~V~~vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~ 160 (453)
++++.+++|.|+|+|+|+||+|+++++|++++++++.++|++++++++|++++++++|++|+++.|+++|+|++++++ .
T Consensus 283 ~~~~~~~~~~l~v~Vt~vlG~~~~~~~v~~~~a~~s~~~~~~vls~~~l~~~~~~~~~~l~~~~~k~~~G~Y~~~~~~-~ 361 (636)
T PF05817_consen 283 SASLSSSKPSLKVRVTNVLGQPLPPLSVKLVSAISSSSDDSVVLSNKPLTFDSDKTVYELDLMSLKPARGYYKFSFSV-S 361 (636)
T ss_pred CcccccCCCcEEEEEEeccCCcCCcchhhhhhhhhccCCcceeeccccceecCCCCeEEEecccCCCCCceEEEEEEe-c
Confidence 999999999999999999999999999999999888888889999999998888889999999999999999999988 2
Q ss_pred cccccceeeeecceeEEEEEEEEEEEEEeeEEEEeeCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEc-CCCCC
Q 012932 161 QDSEQQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMST-PLGNA 239 (453)
Q Consensus 161 ~d~~~~~~~~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~k~~~~l~ad~~~~l~l~F~l~~-~~g~~ 239 (453)
++.++++ .+.+++|+|+++|+|++++++|.|+|+++.++++++++++++..+|++|++|+++++|+|++ ++|++
T Consensus 362 ----~~~~~~~-~~~~~~vkV~~~v~v~~~~v~v~d~d~~~~~~~~~v~~~~k~~~~l~ad~~~~l~l~f~l~~~~~g~~ 436 (636)
T PF05817_consen 362 ----GDKRLIG-NTAQLQVKVLGEVSVENAEVSVADSDQSSAPKKTSVDYPSKLSSSLSADSHQKLKLKFSLTDKSDGKP 436 (636)
T ss_pred ----Cccceee-eEEEEEEEEEEEEEEeEEEEEeecCCCCcCcceeeecccccccCCccCCCCceEEEEEEEEEcCCCCc
Confidence 2235554 34899999999999999999999999999999999999999999999999999999999965 78999
Q ss_pred CCceeEEEEEEe-CCceEEEEEec-CCCceEEEEeccccchhhhhccCccEEEEEEEecccccCCcceeeeeEEecCCCC
Q 012932 240 FKPHQAFLRLRH-ETKVEHTFVVG-SSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEP 317 (453)
Q Consensus 240 ~~PhQafl~l~~-~t~~e~~fvvk-~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~~~~~~l~~i~L~~~~~ 317 (453)
++||||||||+| ++|+|++|+++ +++++|++++|+++++++|.+.||+|+++|||||+.++||+.|++|+++|++++.
T Consensus 437 ~~phQafl~l~~~~t~~e~~f~~~~~~~~~~k~~l~~~~~~~~f~~~sg~y~~~LiiGd~~~~~~~~~~l~~i~l~~~~~ 516 (636)
T PF05817_consen 437 KRPHQAFLRLTHQETGLEIIFPAEVDSSGKYKFELDLKDLPKQFLYLSGPYSLSLIIGDASISNPLNWNLGDISLKFPED 516 (636)
T ss_pred cceeEEEEEEEeCCCCceEEEeeecCCCceEEEEEeccccchhhhhcCCceeEEEEEecCCcCCceeeeeeEEEEecCCc
Confidence 999999999999 99999999985 5667899999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHH
Q 012932 318 PENASRPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVI 397 (453)
Q Consensus 318 ~~~~~~~p~~~~e~~~ry~pkpEI~H~FR~peK~Pp~~vS~~Ft~lvlapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i~ 397 (453)
+++.+++++.||+|||||||+||+||||||++||++|+++|++||++|+++|.++|+|++|+|+++ ++++
T Consensus 517 ------~~~~~~~~~~ry~~kpEI~H~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl~~l~~~~----~~~~ 586 (636)
T PF05817_consen 517 ------APPPKYEKPVRYGPKPEIHHIFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGANLSNLPFSP----SAIL 586 (636)
T ss_pred ------CCCCCccccccCCCCCceeeecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCCCc----hHHH
Confidence 122456677999999999999999999999999999999999999999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHHHHh
Q 012932 398 FHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 447 (453)
Q Consensus 398 F~~sL~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la~~r 447 (453)
||+||+|||++|++||++|||||||+|+++||+|||++|+|+||++++||
T Consensus 587 F~~~l~ai~glf~~Yw~~l~lFqTL~~~~~lg~~t~~~G~r~L~~~a~~r 636 (636)
T PF05817_consen 587 FHGGLGAIEGLFFLYWLGLNLFQTLPYLAVLGAVTFLSGNRALRELAERR 636 (636)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-69 Score=518.51 Aligned_cols=271 Identities=41% Similarity=0.693 Sum_probs=253.4
Q ss_pred ccceeeeecceeEEEEEEEEEEEEEeeEEEEeeCCCCccceeeeeecCCCcceeeecCCcceEEEEEEEEcCCCCCCCce
Q 012932 164 EQQTVYATGTLTQVPIYVTGLIKIENAKIAVLDSDLGSVETQKKLDLAGESTVSVSANHLQKLRLSFQMSTPLGNAFKPH 243 (453)
Q Consensus 164 ~~~~~~~~~~~~~~~v~V~~~v~v~~~~~~v~d~d~~~~~~~~~l~~~~k~~~~l~ad~~~~l~l~F~l~~~~g~~~~Ph 243 (453)
+++++|++-+++.+ |+++++|+++|+++++.|+|++.+++.++++++.|+...+++|++|++.++|++++..|.+.+||
T Consensus 12 ~~~~~~ia~a~~l~-v~a~~~V~v~n~~ig~~d~d~~~a~~~~~vt~~~k~~~vl~ad~~q~l~l~Fql~~~~g~~~kpH 90 (287)
T KOG2447|consen 12 ACISFYIAYAQALV-VAASGTVGVSNLEIGIVDSDIGIAETVKKVTLPDKLEVVLSADAIQKLNLKFQLTLLTGAPLKPH 90 (287)
T ss_pred hhhHHHHHHHHHHh-hhhccccccceEEEEeeccccCcccccceeeecCCCceeEeeccchhheeeEEEEecCCCCCccc
Confidence 34567877666665 99999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eEEEEEEe-CCceEEEEEecCC-CceEEEEeccccchhhhhccCccEEEEEEEecccccCCcceeeeeEEecCCCCCCCC
Q 012932 244 QAFLRLRH-ETKVEHTFVVGSS-GKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMENSLLRDIGYVELDLPEPPENA 321 (453)
Q Consensus 244 Qafl~l~~-~t~~e~~fvvk~s-~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~~~~~~l~~i~L~~~~~~~~~ 321 (453)
|+|+|+.+ ++|.|++|+++.+ |+.|++++|..+.+++|.++||+|++.|+|||+.++||+.|++|+++|+||++.+++
T Consensus 91 Qaf~rl~~~~~g~e~vfv~~~d~~~v~~~~l~~~~~~~s~~~~sgtyti~L~vgdas~knpl~~~i~~l~l~fp~~~e~~ 170 (287)
T KOG2447|consen 91 QAFFRLENKKTGKEVVFVVEPDQGKVYKLELDTLLQEASFSYLSGTYTIYLLVGDASLKNPLLWNIAQLNLNFPEDHEPK 170 (287)
T ss_pred hheeEeeecCCCeEEEEEEecCCchhHHHHHHHhccccccccCCCcEEEEEEecccccCCcchhhhhheEecCCcccccc
Confidence 99999999 7899999998755 778999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHH
Q 012932 322 SRPPPQPVDPYTRYGPKAEITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLG 401 (453)
Q Consensus 322 ~~~p~~~~e~~~ry~pkpEI~H~FR~peK~Pp~~vS~~Ft~lvlapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~s 401 (453)
++++ .++|||||||+|+||+||||||+++|++|+++|+.|+++|+++|.++|+|++|+|.++. |.++||+|
T Consensus 171 ~~~~------~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~---s~~~Fh~g 241 (287)
T KOG2447|consen 171 PKVS------QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPT---STLGFHAG 241 (287)
T ss_pred cccc------hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCc---hhhhhhhH
Confidence 6532 26899999999999999999999999999999999999999999999999999999974 79999999
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 402 IAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 402 L~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
|+|+|+||++||+++||||||+|+++||++||++|||+||...
T Consensus 242 i~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra~~ 284 (287)
T KOG2447|consen 242 IAGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRAQG 284 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999544
No 3
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=69.94 E-value=26 Score=31.67 Aligned_cols=71 Identities=8% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEe--ccccccCCCCc-eEEecCCCCCCCceeEEEEEEEee
Q 012932 88 KDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIE--NQELKFDPQDA-VYFLDDLPASFDVGEYIFVFKMLV 160 (453)
Q Consensus 88 ~~~l~v~V~~vlg~~~~~~~V~~~~~~~~~~~~~~v~~--~~~l~~~~~~~-~y~l~~~~~k~~~G~Y~~~~~v~~ 160 (453)
.+.|.+++.|.=..-+..+++... +.+...+ .++.+ +..+++.|+.. .|.++.......+|-|++.+.+..
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~-V~~~~~~-k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAK-VTKKGSK-KVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEE-EEECCCC-eEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEc
Confidence 467888888887777777777653 2222222 34443 33466666654 456665567899999999987744
No 4
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=66.85 E-value=6.4 Score=38.45 Aligned_cols=37 Identities=22% Similarity=0.644 Sum_probs=16.8
Q ss_pred hcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 012932 378 LGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWL 414 (453)
Q Consensus 378 lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~lf~~Ywl 414 (453)
.|.|+.++|....+.-|......++..+.++...||+
T Consensus 254 fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 290 (292)
T PF01544_consen 254 FGMNFKGMPELDWPYGYFFVIILGLMILVAILLYWWF 290 (292)
T ss_dssp TTS-SS---SSSSSS-SHHH--HHHHHHHHHHHHCCT
T ss_pred hhCCccCCCccCCccHHHHHHHHHHHHHHHHHHHHhe
Confidence 4889999997654322232222455555555555554
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=63.91 E-value=21 Score=36.40 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=10.3
Q ss_pred hcccCCCCCCCC
Q 012932 378 LGVNLKNFPTSA 389 (453)
Q Consensus 378 lG~Nl~n~p~s~ 389 (453)
.|.|++++|..-
T Consensus 284 yGMNf~~mPel~ 295 (324)
T PRK09546 284 FGVNLGGIPGGG 295 (324)
T ss_pred hccccCCCCCcC
Confidence 388999999976
No 6
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=59.82 E-value=27 Score=35.12 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCC
Q 012932 364 TILPLFGFIIGLLRLGVNLKNFPTSA 389 (453)
Q Consensus 364 vlapl~~Lli~W~~lG~Nl~n~p~s~ 389 (453)
+++|.-++-+.| |.|++++|...
T Consensus 267 IflP~t~IaGiy---GMNf~~mP~l~ 289 (318)
T TIGR00383 267 IFIPLTFIAGIY---GMNFKFMPELN 289 (318)
T ss_pred HHHHHHHHHHHH---hCCcccCcccc
Confidence 455554444443 88999999976
No 7
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=59.31 E-value=46 Score=29.29 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=38.3
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 90 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 90 ~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
.|..+|-| ..|+|+..+.|.+.+.. .++-..+... ..+.|+..=..........+|.|++.|.+
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~~---~~~~~~i~~~--~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~ 66 (112)
T TIGR02962 2 PLSTHVLDTTSGKPAAGVPVTLYRLD---GSGWTPLAEG--VTNADGRCPDLLPEGETLAAGIYKLRFDT 66 (112)
T ss_pred CceEEEEeCCCCccCCCCEEEEEEec---CCCeEEEEEE--EECCCCCCcCcccCcccCCCeeEEEEEEh
Confidence 57788887 88999999999997532 1111112111 23345532111122345678999999987
No 8
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=59.25 E-value=21 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCC
Q 012932 365 ILPLFGFIIGLLRLGVNLKNFPTSA 389 (453)
Q Consensus 365 lapl~~Lli~W~~lG~Nl~n~p~s~ 389 (453)
++|.-++.+. .|.|++++|...
T Consensus 266 f~pptliagi---yGMNf~~mP~~~ 287 (316)
T PRK11085 266 FLPPTLVASS---YGMNFEFMPELK 287 (316)
T ss_pred HHHHHHHHhh---cccccCCCCCCC
Confidence 4444344333 388999999765
No 9
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=55.23 E-value=61 Score=29.50 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 88 KDSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 88 ~~~l~v~V~~v-lg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
+..|+.+|-|. -|+|++.+.|.+.... ++.-..+... ..|.|+. +...+.+....+|.|++.|++
T Consensus 26 ~~~Is~HVLDt~~G~PA~gV~V~L~~~~---~~~w~~l~~~--~Td~dGR-~~~l~~~~~~~~G~Y~L~F~t 91 (137)
T PRK15036 26 QNILSVHILNQQTGKPAADVTVTLEKKA---DNGWLQLNTA--KTDKDGR-IKALWPEQTATTGDYRVVFKT 91 (137)
T ss_pred CCCeEEEEEeCCCCcCCCCCEEEEEEcc---CCceEEEEEE--EECCCCC-CccccCcccCCCeeEEEEEEc
Confidence 35799999987 8999999999997631 1111111111 2344553 222111334678999999986
No 10
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=54.78 E-value=56 Score=28.80 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=38.9
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 90 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 90 ~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
.|..+|-| ..|+|+..+.|.+.+.... .-.. +... ..+.|+..=.+........+|.|++.|.+
T Consensus 2 ~lstHVLDt~~G~PAagv~V~L~~~~~~--~~~~-i~~~--~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 66 (112)
T cd05822 2 PLSTHVLDTATGKPAAGVAVTLYRLDGN--GWTL-LATG--VTNADGRCDDLLPPGAQLAAGTYKLTFDT 66 (112)
T ss_pred CceeEEEeCCCCcccCCCEEEEEEecCC--CeEE-EEEE--EECCCCCccCcccccccCCCeeEEEEEEh
Confidence 46778877 8899999999998765221 1122 2222 23445543222222246789999999987
No 11
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=2.6e+02 Score=28.60 Aligned_cols=107 Identities=16% Similarity=0.007 Sum_probs=72.3
Q ss_pred CCCCCCCCCceeeeccCCCCCCChhhHHHHH----------H--HHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHH-H
Q 012932 331 PYTRYGPKAEITHIFRAPEKRPPQELSLAFL----------V--LTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAV-I 397 (453)
Q Consensus 331 ~~~ry~pkpEI~H~FR~peK~Pp~~vS~~Ft----------~--lvlapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i-~ 397 (453)
-|+++.++|+-. .++=.|-+.|+=+|- . .++.++.-|++....++---.|+..-+ +.. -
T Consensus 163 fp~~~e~~~~~~----~~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~p----ss~~s 234 (287)
T KOG2447|consen 163 FPEDHEPKPKVS----QDKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFP----SSPTS 234 (287)
T ss_pred CCcccccccccc----hhccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC----CCCch
Confidence 345677777654 444455556666662 2 224444444444433333333666654 555 9
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q 012932 398 FHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLAS 445 (453)
Q Consensus 398 F~~sL~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la~ 445 (453)
+++.++|+-+++++|++-|.=+....-+.+++..++.++--.=|=++.
T Consensus 235 ~~~Fh~gi~g~~vL~f~yWlqlsmFqtL~yla~lg~~tflagnr~lra 282 (287)
T KOG2447|consen 235 TLGFHAGIAGILVLFFVYWLQLSMFQTLKYLAYLGAPTFLAGNRLLRA 282 (287)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHh
Confidence 999999999999999999999999999999999999887655555543
No 12
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=48.57 E-value=70 Score=31.99 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=16.2
Q ss_pred CCceeeeccCCCCCCChhhHHHHH
Q 012932 338 KAEITHIFRAPEKRPPQELSLAFL 361 (453)
Q Consensus 338 kpEI~H~FR~peK~Pp~~vS~~Ft 361 (453)
+.+..+++++|.+.++..+-+...
T Consensus 110 ~~~l~~i~~~~~~y~~~l~~~~~g 133 (250)
T COG2966 110 HKKLDEIQKQPLRYSRWLVLLMAG 133 (250)
T ss_pred HHHHHHhhhCccccccHHHHHHHH
Confidence 456677888888887766554433
No 13
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=45.01 E-value=37 Score=34.76 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Q 012932 365 ILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFW 413 (453)
Q Consensus 365 lapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~lf~~Yw 413 (453)
++|.-++.+.| |.|++++|..-.+ |...+.+++.++..++..+|
T Consensus 272 flPpTlIagiy---GMNf~~mPel~~~--~Gy~~~l~~m~~~~~~~~~~ 315 (322)
T COG0598 272 FLPPTLITGFY---GMNFKGMPELDWP--YGYPIALILMLLLALLLYLY 315 (322)
T ss_pred HHhhHHHHccc---ccCCCCCcCCCCc--ccHHHHHHHHHHHHHHHHHH
Confidence 44444444333 8899999977633 33333333333333333333
No 14
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.59 E-value=59 Score=35.71 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchhHHHHHHH--HHHHHHHHHH
Q 012932 352 PPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLG--IAAVLLLYVL 411 (453)
Q Consensus 352 Pp~~vS~~Ft~lvlapl----------------~~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~s--L~gie~lf~~ 411 (453)
-|.+++++..|+++.|. +++...++..|..++ .+..... ....+...+ +..+.+.+..
T Consensus 30 ~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK10669 30 ISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKS--IAIPGAIAQIAVATLLGMALS 107 (558)
T ss_pred CCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777776652 234444455665444 4322211 011111111 2223444566
Q ss_pred HhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 412 FWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 412 Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
|++++++-+.+.+...++.-..-.--|.|++..
T Consensus 108 ~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~ 140 (558)
T PRK10669 108 AVLGWSLMTGIVFGLCLSTASTVVLLRALEERQ 140 (558)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999988888887777766666667776644
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=36.29 E-value=2.7e+02 Score=25.41 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=30.0
Q ss_pred eccCCCCCCceEEEEEeEeecCCCceEEeccccc-cCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 97 TVLGSHAPPLTVTLVRAFSSSARDNSIIENQELK-FDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 97 ~vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
|=.|+|++..++.|.... .++. ++ ....-. .+.++..|.++ ..+|+|.+.+..
T Consensus 11 dg~G~pv~g~~I~L~A~~-tS~~-Vv--~~t~as~~t~~~G~Ys~~-----~epG~Y~V~l~~ 64 (134)
T PF08400_consen 11 DGAGKPVPGCTITLKARR-TSST-VV--VGTVASVVTGEAGEYSFD-----VEPGVYRVTLKV 64 (134)
T ss_pred CCCCCcCCCCEEEEEEcc-Cchh-eE--EEEEEEEEcCCCceEEEE-----ecCCeEEEEEEE
Confidence 456889988888876432 2222 22 221111 22233368775 458999998765
No 16
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=34.52 E-value=1.9e+02 Score=25.45 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=41.1
Q ss_pred ceEEEEEEEEcCCCCCCCceeEEEEEEe--CCceEEEEEecCC-CceEEEEeccccchhhhhccCccEEEEEE
Q 012932 224 QKLRLSFQMSTPLGNAFKPHQAFLRLRH--ETKVEHTFVVGSS-GKKFEITLDFLGLVEKFFYLSGRYDIQLT 293 (453)
Q Consensus 224 ~~l~l~F~l~~~~g~~~~PhQafl~l~~--~t~~e~~fvvk~s-~k~y~~~ld~~~l~~~f~~~sg~y~v~Li 293 (453)
+.+.+. +++.+|.+..+..+.+.|.+ +.+.+..+..+.. ...|...++. ..+|.+.+++-
T Consensus 69 ~~~~i~--~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~--------~~~G~W~l~l~ 131 (146)
T PF05751_consen 69 NSLTIR--LTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPL--------LKKGRWYLRLD 131 (146)
T ss_pred CeEEEE--EEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCC--------CCCccEEEEEE
Confidence 455555 66678888999999999988 5566666665533 3357665432 24789999883
No 17
>PF07608 DUF1571: Protein of unknown function (DUF1571); InterPro: IPR011465 This is a family of paralogous proteins found in Planctomycetacia and Betaproteobacteria.
Probab=33.14 E-value=1.3e+02 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.7
Q ss_pred CcceEEEEEEEEcCCCCCCCceeEEEEEEe-C--CceEEEEEec
Q 012932 222 HLQKLRLSFQMSTPLGNAFKPHQAFLRLRH-E--TKVEHTFVVG 262 (453)
Q Consensus 222 ~~~~l~l~F~l~~~~g~~~~PhQafl~l~~-~--t~~e~~fvvk 262 (453)
..|.+.+++.-...+|....|+++++.+-. . .|+|++|+..
T Consensus 13 ~~~~m~~KvR~~~~~~~~~~PlsVY~Kwl~p~~~~GrEvIY~eg 56 (213)
T PF07608_consen 13 EPQTMELKVRHRSNDGRDVQPLSVYLKWLPPGAHAGREVIYVEG 56 (213)
T ss_pred CCcEEEEEEEEecccCCCCCCeEEEEEecCCCCCCCcEEEEecc
Confidence 457788885544467888999999999988 4 7999999854
No 18
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=32.64 E-value=63 Score=25.32 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=31.8
Q ss_pred ceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEE
Q 012932 90 SLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFK 157 (453)
Q Consensus 90 ~l~v~V~~vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~ 157 (453)
+|+=+|.|--|+|++.++|.+... ... . ......|.++ .|.+..+ .+|.|.+.+.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~---~~~-~----~~~~~Td~~G-~f~~~~l----~~g~Y~l~v~ 55 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQ---DGG-T----VYTTTTDSDG-RFSFEGL----PPGTYTLRVS 55 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET-----TTT-E----CCEEE--TTS-EEEEEEE-----SEEEEEEEE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEe---eCC-C----EEEEEECCCc-eEEEEcc----CCEeEEEEEE
Confidence 366789999999999999997542 111 1 1122233344 6888733 3599998754
No 19
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=31.94 E-value=2.7e+02 Score=32.54 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CcchhHHHHHHHHHHHHHHHHHHhhc-----------------c
Q 012932 355 ELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSA-VPATFAVIFHLGIAAVLLLYVLFWLK-----------------L 416 (453)
Q Consensus 355 ~vS~~Ft~lvlapl~~Lli~W~~lG~Nl~n~p~s~-~~~~~~i~F~~sL~gie~lf~~Ywl~-----------------l 416 (453)
+.+.++++++++.+..+++.|..-|+.+....... ...-.|+..++++ -+..+-+-||+. .
T Consensus 161 l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~-~~l~~a~~y~L~ry~Ll~s~~g~v~GagYt 239 (774)
T PF03699_consen 161 LQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLAL-FFLLKAVGYWLDRYELLYSQRGVVYGAGYT 239 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHeecCCCeEeCCCce
Confidence 45666666777777777777776666654222221 1111233222222 233344567764 3
Q ss_pred CHHHHHHHHHHhhHhhhhhhhHHHHHHHHHhh
Q 012932 417 DLFTTLKTLCFLGVFLMVVGHRTLSHLASASA 448 (453)
Q Consensus 417 ~lF~TL~~l~~Lg~~t~l~G~r~L~~la~~r~ 448 (453)
++--+|+...++++.+++++--++-.+..++.
T Consensus 240 Dv~a~Lp~~~il~~i~~~~A~~~~~~~~~~~~ 271 (774)
T PF03699_consen 240 DVHATLPAYTILAVIALLCAVLFFINIFRRNW 271 (774)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45567888888888888888777766655443
No 20
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=31.36 E-value=1.2e+02 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 408 LYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 408 lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
..+.||.++++-+.+-+.+.++.-..-...+.|+++.
T Consensus 91 ~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~ 127 (273)
T TIGR00932 91 LLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERG 127 (273)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 3467889999999999999988887777778888764
No 21
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=31.13 E-value=92 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=19.7
Q ss_pred HHhhHhhhhhhhHHHHHHHHHh
Q 012932 426 CFLGVFLMVVGHRTLSHLASAS 447 (453)
Q Consensus 426 ~~Lg~~t~l~G~r~L~~la~~r 447 (453)
.+.+++.++.|+.+++++.+++
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccC
Confidence 6789999999999999998866
No 22
>COG4420 Predicted membrane protein [Function unknown]
Probab=30.67 E-value=1.2e+02 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-CCCCCCCcchhHHHHHHHHHHHH
Q 012932 361 LVLTILPLFGFIIGLLRLGVNLK-NFPTSAVPATFAVIFHLGIAAVL 406 (453)
Q Consensus 361 t~lvlapl~~Lli~W~~lG~Nl~-n~p~s~~~~~~~i~F~~sL~gie 406 (453)
+...+..+.++|+.|..+..-.. +.|..+-|++ |+-.+.+++
T Consensus 57 sw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi----~LnLllS~~ 99 (191)
T COG4420 57 SWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFI----LLNLLLSTL 99 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHH----HHHHHHHHH
Confidence 45566777788899985443222 4667664444 444444444
No 23
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=30.08 E-value=1.1e+02 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHH-HHhhccCHHHHHHHHHHhhHhhhhh
Q 012932 394 FAVIFHLGIAAVLLLYV-LFWLKLDLFTTLKTLCFLGVFLMVV 435 (453)
Q Consensus 394 ~~i~F~~sL~gie~lf~-~Ywl~l~lF~TL~~l~~Lg~~t~l~ 435 (453)
|-..|-+|++|.+.+|+ +|-.|+|-+-.+......|...++.
T Consensus 18 Yl~~faGgll~~~il~~iLYi~Gv~~~ici~~~~~~~~~lv~~ 60 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILFVILYIAGVNQWICIGFGVVSGSLLVWQ 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhhhhee
Confidence 67788899999777765 5556999999999998888887764
No 24
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.37 E-value=1.5e+02 Score=26.21 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 012932 349 EKRPPQELSLAFLVLTILPLFGFIIGLLRLG 379 (453)
Q Consensus 349 eK~Pp~~vS~~Ft~lvlapl~~Lli~W~~lG 379 (453)
.|.|=+.|.+++.++++-..++.++.++..|
T Consensus 37 ~k~pwK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 37 VKIPWKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555678888888888777766666666555
No 25
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=27.85 E-value=2.7e+02 Score=24.53 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=40.1
Q ss_pred CceEEEEEeccCCCCCCceEEE--EEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEee
Q 012932 89 DSLKVKVNTVLGSHAPPLTVTL--VRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKMLV 160 (453)
Q Consensus 89 ~~l~v~V~~vlg~~~~~~~V~~--~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~~ 160 (453)
..+.++++|-=|+|+.+.++.+ .+......|-+. .|+...+ ..|..... .+..|.|.+.+.+..
T Consensus 69 ~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~-----~l~~~~~-g~y~~~~~--~~~~G~W~l~l~~~~ 134 (146)
T PF05751_consen 69 NSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTL-----TLTESAP-GVYRAPVP--LLKKGRWYLRLDWEP 134 (146)
T ss_pred CeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeE-----EeeECCC-ceEEEEcC--CCCCccEEEEEEEec
Confidence 7889999998999987765554 443333222121 2222223 37888643 568999999886644
No 26
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.20 E-value=2.9e+02 Score=31.13 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHHHHhh
Q 012932 395 AVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASASA 448 (453)
Q Consensus 395 ~i~F~~sL~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la~~r~ 448 (453)
..+|.+.+....+.+..||....+...+.....+....++.|.|.+.+.-..+.
T Consensus 58 ~~i~~a~~~~~~~~l~~~~~~~~~~~s~~~~~~~l~~~~i~~~R~~~R~~~~~~ 111 (588)
T COG1086 58 FIILKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDAL 111 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555777777777899999999999999999999999988777655
No 27
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=27.04 E-value=21 Score=30.99 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCceeeeccCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 012932 334 RYGPKAEITHIFRAP---EKRPPQELSLAFLVLTILPLFGFII 373 (453)
Q Consensus 334 ry~pkpEI~H~FR~p---eK~Pp~~vS~~Ft~lvlapl~~Lli 373 (453)
.|.|+|+=.|-=+.| ..||.+.+..+|+.++++.+++.++
T Consensus 6 sY~PLP~~~~~~~~~~~~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 6 SYTPLPDSSESAPGPGGRRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp -------------------------------------------
T ss_pred ccCCCCCCCcccCCCCcCcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 488888888777766 6778888888888777665555444
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.71 E-value=1.8e+02 Score=27.80 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 012932 346 RAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWLK 415 (453)
Q Consensus 346 R~peK~Pp~~vS~~Ft~lvlapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~lf~~Ywl~ 415 (453)
....+|++.+-..++.++..+.|+++++.- .+ +|...+|.+...+++ ++|.-.+...||++
T Consensus 138 ~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~-----~~--lp~~inp~l~~~~~i--iig~i~~~~~~~lk 198 (206)
T PF06570_consen 138 KKKKKRPSWWKYILISVLAMVLWIVIFVLT-----SF--LPPVINPVLPPWVYI--IIGVIAFALRFYLK 198 (206)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHH-----HH--ccccCCcCCCHHHHH--HHHHHHHHHHHHHH
No 29
>PRK00068 hypothetical protein; Validated
Probab=25.94 E-value=5.8e+02 Score=30.65 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=49.6
Q ss_pred eeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCCCCCcchhHHHHHHHHHHHH--HHHHHHhhc-
Q 012932 343 HIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLLRLG----VNLKNFPTSAVPATFAVIFHLGIAAVL--LLYVLFWLK- 415 (453)
Q Consensus 343 H~FR~peK~Pp~~vS~~Ft~lvlapl~~Lli~W~~lG----~Nl~n~p~s~~~~~~~i~F~~sL~gie--~lf~~Ywl~- 415 (453)
++|+=|== -.+++.+|++++++-+..+++-.+.-| .++......... .+-.-+..++|++ +.-+-||+.
T Consensus 159 Y~F~LPf~--~~l~~~l~~~~~~~~i~~~~~~~l~g~~~~~~~l~~~~~~~~~--~ar~hl~~l~~~~~ll~a~~ywL~r 234 (970)
T PRK00068 159 YAFKLPFY--RSLLSYLLVLLILAFIITLIAHYILGGIRKGIRLAGRKGGISR--FARKQLAVLAGLLMLLKAVGYWLDR 234 (970)
T ss_pred EEEehHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcCCCH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56765511 124555666555555555544444444 555432212111 1222222333433 334558875
Q ss_pred ----------------cCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 416 ----------------LDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 416 ----------------l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
.++--+|+...+|.+++++++--++-.+.
T Consensus 235 y~Ll~s~~g~v~GA~YTDv~a~Lpa~~iL~~ia~i~a~~~~~~~~ 279 (970)
T PRK00068 235 YNLLYSTRGVFTGASYTDINAVLPAKLILLVIAVICAIAVFSSIV 279 (970)
T ss_pred hhheecCCCEEecCChHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777787777777766665443
No 30
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.35 E-value=88 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhhHhhhhhhhHHHHHHHHHhhhhh
Q 012932 417 DLFTTLKTLCFLGVFLMVVGHRTLSHLASASAKLK 451 (453)
Q Consensus 417 ~lF~TL~~l~~Lg~~t~l~G~r~L~~la~~r~~~~ 451 (453)
+.|.|-.|..+++++..+.+--+|..+-.+|+|+.
T Consensus 25 sffsthm~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44556666667777777777777777777777654
No 31
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.84 E-value=1.8e+02 Score=35.81 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCHH
Q 012932 395 AVIFHLGIAAVLLLYVLFWLKLDLF 419 (453)
Q Consensus 395 ~i~F~~sL~gie~lf~~Ywl~l~lF 419 (453)
.+.|+.|++++.+.++++|..|-+|
T Consensus 74 ~L~~LFGl~AYLLP~LL~~~a~~l~ 98 (1355)
T PRK10263 74 TLFFIFGVMAYTIPVIIVGGCWFAW 98 (1355)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5566777878776666666665544
No 32
>smart00095 TR_THY Transthyretin.
Probab=24.65 E-value=3.3e+02 Score=24.43 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=39.7
Q ss_pred cCCceEEEEEe-ccCCCCCCceEEEEEeEeecCCC-ceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 87 KKDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARD-NSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 87 ~~~~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~-~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
.+++|..+|-| ..|+|+..+.|.|.+... .++ .. +... ..+.|+.+-.+ +......+|.|++.|.+
T Consensus 2 ~~~plTtHVLDt~~G~PAagv~V~L~~~~~--~~~w~~-la~~--~Tn~DGR~~~l-l~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 2 SKCPLMVKVLDAVRGSPAVNVAVKVFKKTE--EGTWEP-FASG--KTNESGEIHEL-TTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCCeEEEEEECCCCccCCCCEEEEEEeCC--CCceEE-EEEE--ecCCCccccCc-cCcccccceEEEEEEeh
Confidence 35778888886 579999999999965320 111 22 2222 13344443221 11345678999999987
No 33
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=24.45 E-value=82 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=22.3
Q ss_pred ceeeeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHH-Hhc--ccCCCCCCC
Q 012932 340 EITHIFRAPEKRPPQELSLAFLVLTILPLFGFIIGLL-RLG--VNLKNFPTS 388 (453)
Q Consensus 340 EI~H~FR~peK~Pp~~vS~~Ft~lvlapl~~Lli~W~-~lG--~Nl~n~p~s 388 (453)
|++|++|.|. .+ .+..++++.|++..++.+. ..+ -..+++|.+
T Consensus 2 E~~~~~r~~~-----~~-~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpva 47 (164)
T TIGR03061 2 ELKRLRKNKL-----LR-IALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVA 47 (164)
T ss_pred hHHHhhcCcH-----HH-HHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEE
Confidence 7788888762 22 2333445567765544443 322 234566554
No 34
>PRK11281 hypothetical protein; Provisional
Probab=24.17 E-value=3.2e+02 Score=33.25 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCHHHHHHHHHHhhHhhhh---hhhHHHH----HHHHHhhhhh
Q 012932 406 LLLYVLFWLKLDLFTTLKTLCFLGVFLMV---VGHRTLS----HLASASAKLK 451 (453)
Q Consensus 406 e~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l---~G~r~L~----~la~~r~~~~ 451 (453)
..++..||+.+.|..-|-...++.+..++ .+.|.|. ++|-+|.+.|
T Consensus 702 l~~~GY~yTa~~l~~~l~~s~~l~~~~~l~~~~~~R~l~i~~RRla~~ra~~r 754 (1113)
T PRK11281 702 LVVLGYYYTALRLIGRLIETLYLLIIWNLLYQTVLRGLSVAARRLAYRRALAK 754 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999988887777766554 3344443 5555555544
No 35
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=24.05 E-value=91 Score=27.42 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=36.3
Q ss_pred eEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEEe
Q 012932 91 LKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKML 159 (453)
Q Consensus 91 l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v~ 159 (453)
|..+|-| ..|+|+..+.|.+.+... +.+-..+... ..+.|+..=..........+|.|++.|.+.
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~--~~~~~~l~~~--~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDS--DGSWTLLAEG--VTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEET--TSCEEEEEEE--EBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecC--CCCcEEEEEE--EECCCCcccccccccccccceEEEEEEEHH
Confidence 5566654 579999999999976542 2212223322 234455321122335678899999999873
No 36
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=24.03 E-value=4.2e+02 Score=32.50 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhccCH--HHHHHHHHHhhHhh
Q 012932 355 ELSLAFLVLTILPLFGFIIGLLRLGVNLKNFPTSAVPATFAVIFHLGIAAVLLLYVLFWLKLDL--FTTLKTLCFLGVFL 432 (453)
Q Consensus 355 ~vS~~Ft~lvlapl~~Lli~W~~lG~Nl~n~p~s~~~~~~~i~F~~sL~gie~lf~~Ywl~l~l--F~TL~~l~~Lg~~t 432 (453)
+.+.+...+.++-++++++.|+.+|.|.. .+ ..+++-+.++-+..+-+|+|.|.++ ....-....+|+ +
T Consensus 1046 i~~~~~~~l~~a~~~v~~V~~l~l~l~~~---~a-----liv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi-s 1116 (1204)
T TIGR00917 1046 IWSDALINLGISLGAIFIVTLVLLGLNAL---SA-----VNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI-S 1116 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch---hH-----HHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh-H
Confidence 34455555666677777788888776551 11 2444555555666666777777654 777777777787 5
Q ss_pred hhhhhHHHHHHH
Q 012932 433 MVVGHRTLSHLA 444 (453)
Q Consensus 433 ~l~G~r~L~~la 444 (453)
+-...+..|...
T Consensus 1117 V~f~~hI~~~f~ 1128 (1204)
T TIGR00917 1117 IEFCSHINAQFS 1128 (1204)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 37
>COG4125 Predicted membrane protein [Function unknown]
Probab=23.88 E-value=2.2e+02 Score=26.27 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHHHHh
Q 012932 394 FAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLASAS 447 (453)
Q Consensus 394 ~~i~F~~sL~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la~~r 447 (453)
-+++|-+|++.+..=+.-+|++.+++|++-. =+|++.|+----++=..+-+|
T Consensus 83 HAv~FE~gliv~lvP~iAw~L~isL~eAl~L--dig~~lffl~Ytf~fNwaYD~ 134 (149)
T COG4125 83 HAVGFELGLIVILVPLIAWWLGISLLEALVL--DIGLILFFLPYTFLFNWAYDR 134 (149)
T ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999854 345555555555544444433
No 38
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=23.71 E-value=2.7e+02 Score=22.17 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhHhhhh
Q 012932 394 FAVIFHLGIAAVLLLYVLFWLKLDLFTTLKTLCFLGVFLMV 434 (453)
Q Consensus 394 ~~i~F~~sL~gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l 434 (453)
.+++|=++.+.+-.-...+|++.++.+.+.....+++.+++
T Consensus 9 hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~ 49 (67)
T PF05232_consen 9 HAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMV 49 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57888888888889999999999999999888777766553
No 39
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.55 E-value=2e+02 Score=32.13 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred CChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchhHHHHHHHHHHH-----HHH
Q 012932 352 PPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLGIAAV-----LLL 408 (453)
Q Consensus 352 Pp~~vS~~Ft~lvlapl----------------~~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~sL~gi-----e~l 408 (453)
-|.++.++..|+++.|. +++...++.+|..++ .+-... ...|..+..++ .+.
T Consensus 29 ~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~-----~~~~~~g~~~v~~t~~~~~ 103 (601)
T PRK03659 29 IGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR-----RSIFGVGAAQVLLSAAVLA 103 (601)
T ss_pred CChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 35677787777777662 244444555665443 332111 11122222111 112
Q ss_pred HHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 409 YVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 409 f~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
...||++++....+-....++.-..-..-+.|++..
T Consensus 104 ~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 104 GLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 245678888765555555444333333456666544
No 40
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.61 E-value=2.4e+02 Score=31.79 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCChhhHHHHHHHHHHHH----------------HHHHHHHHHhcccCC--CCCCCCCcchhHHHHHHHH-----HHHHH
Q 012932 351 RPPQELSLAFLVLTILPL----------------FGFIIGLLRLGVNLK--NFPTSAVPATFAVIFHLGI-----AAVLL 407 (453)
Q Consensus 351 ~Pp~~vS~~Ft~lvlapl----------------~~Lli~W~~lG~Nl~--n~p~s~~~~~~~i~F~~sL-----~gie~ 407 (453)
+-|.+++++.+|+++-|. +++...++.+|..++ .+-... ..+|..|+ .+..+
T Consensus 28 ~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~-----~~~~~~g~~qv~~~~~~~ 102 (621)
T PRK03562 28 GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR-----RSIFGGGALQMVACGGLL 102 (621)
T ss_pred CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 346778888888777662 334444455665443 332111 11121111 11122
Q ss_pred HHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q 012932 408 LYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLSHLA 444 (453)
Q Consensus 408 lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~~la 444 (453)
....||++++....+-..+.++.-.--..-+.|++..
T Consensus 103 ~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 103 GLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455778888877666666554333233356666543
No 41
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=22.08 E-value=1.8e+02 Score=20.96 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=13.0
Q ss_pred CceeEEEEEEEeeccccc
Q 012932 148 DVGEYIFVFKMLVQDSEQ 165 (453)
Q Consensus 148 ~~G~Y~~~~~v~~~d~~~ 165 (453)
++|.|.+.+.+.....++
T Consensus 11 ~PG~Y~l~~~a~~~~~~G 28 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDG 28 (41)
T ss_pred CCeEEEEEEEEEEEeCCC
Confidence 589999998876544433
No 42
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=21.56 E-value=2.6e+02 Score=23.49 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=33.9
Q ss_pred cCCceEEEEEeccCCCCCCceEEEEEeEeecCCCceEEecc--ccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 87 KKDSLKVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQ--ELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 87 ~~~~l~v~V~~vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~--~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
+.-.|.++|.|--|+|++...|.... ..+. .. ++.. ...-+.++ .++..+- ....|.|.+...+
T Consensus 23 ~~~tltatV~D~~gnpv~g~~V~f~~---~~~~-~~-l~~~~~~~~Td~~G-~a~~tlt--st~aG~~~VtA~~ 88 (100)
T PF02369_consen 23 DTNTLTATVTDANGNPVPGQPVTFSS---SSSG-GT-LSPTNTSATTDSNG-IATVTLT--STKAGTYTVTATV 88 (100)
T ss_dssp S-EEEEEEEEETTSEB-TS-EEEE-----EESS-SE-ES-CEE-EEE-TTS-EEEEEEE---SS-EEEEEEEEE
T ss_pred CcEEEEEEEEcCCCCCCCCCEEEEEE---cCCC-cE-EecCccccEECCCE-EEEEEEE--ecCceEEEEEEEE
Confidence 35789999999999999999999711 1122 22 3333 22233333 4555544 3367888876544
No 43
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.19 E-value=6.2e+02 Score=26.21 Aligned_cols=49 Identities=29% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhHhhhhhhhHHHH-------HHHHHhhhhhc
Q 012932 404 AVLLLYVLFWLKLDLFTTLKTLCFLGVFLMVVGHRTLS-------HLASASAKLKS 452 (453)
Q Consensus 404 gie~lf~~Ywl~l~lF~TL~~l~~Lg~~t~l~G~r~L~-------~la~~r~~~~~ 452 (453)
++..+...||+.+.+..-+-...++.+..++.=+-+.| ++|-+|.+.|.
T Consensus 212 i~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~Ra~~kR 267 (340)
T PF12794_consen 212 IVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLLVARRRLAYERAKEKR 267 (340)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778899999888888888777777666554444 45555665553
No 44
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=20.70 E-value=2.2e+02 Score=25.66 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=37.3
Q ss_pred CceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 89 DSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 89 ~~l~v~V~~v-lg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
..|..+|-|. -|+|...++|.+.+.... . .-.+... ..+.|+..=.-.........|.|++.|.+
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~~~--~-~~~l~t~--~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~ 74 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLEGN--Q-WELLKTV--VTNADGRIDAPLLAGETLATGIYELVFHT 74 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEecCC--c-ceeeeEE--EecCCCcccccccCccccccceEEEEEEc
Confidence 4677888764 689998899998775322 1 1111111 12233321111122457789999999987
Done!