Query 012932
Match_columns 453
No_of_seqs 159 out of 210
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ank_A Transthyretin; hormone 58.5 11 0.00039 33.4 4.9 68 86-158 27-95 (147)
2 4ev6_A Magnesium transport pro 57.0 15 0.0005 36.2 6.0 14 378-391 299-312 (339)
3 1qfh_A Protein (gelation facto 38.1 2.2E+02 0.0076 25.5 11.8 56 243-307 135-192 (212)
4 2iub_A CORA, divalent cation t 36.4 16 0.00056 36.3 2.5 12 378-389 323-334 (363)
5 1wlh_A Gelation factor; ABP-12 31.0 3.5E+02 0.012 25.6 13.4 56 243-307 234-291 (311)
6 3rgh_A Filamin-A; cell adhesio 26.4 2.4E+02 0.0083 22.3 7.8 54 244-305 40-95 (100)
7 3qva_A Transthyretin-like prot 22.3 1.1E+02 0.0039 25.9 4.9 59 89-158 10-69 (116)
8 2g2n_A Transthyretin-like prot 21.6 1.5E+02 0.0051 25.1 5.5 65 88-158 3-68 (114)
9 3d33_A Domain of unknown funct 21.0 3.6E+02 0.012 22.3 9.7 67 223-312 37-107 (108)
10 3iwv_A 5-hydroxyisourate hydro 18.7 94 0.0032 27.2 3.7 67 88-158 25-92 (138)
No 1
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=58.51 E-value=11 Score=33.41 Aligned_cols=68 Identities=24% Similarity=0.157 Sum_probs=41.1
Q ss_pred ccCCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 86 TKKDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 86 ~~~~~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
..+++|..+|-| ..|.|+..+.|.+.+.. .++.-..+... +.+.|+..-.+ ....+...|.|++.|.+
T Consensus 27 ~sk~PLTtHVLDt~~G~PA~gv~V~L~~~~--~~~~~~~l~~~--~Td~DGR~~~l-l~~~~~~~G~Y~L~F~t 95 (147)
T 4ank_A 27 ESKCPLMVKVLDAVRGSPAINVAVHVFRKA--ADDTWEPFASG--KTSESGELHGL-TTEEEFVEGIYKVEIDT 95 (147)
T ss_dssp ---CCEEEEEEETTTTEECCSCEEEEEEEC--TTSCEEEEEEE--ECCTTSEECCS-CCTTTCCSEEEEEEECH
T ss_pred CCCCCeEEEEEeCCCCcCCCCCEEEEEEEC--CCCCeEEEEEE--EeCCCCCCCCC-CCccccCCceEEEEEEH
Confidence 347889999998 78999999999987642 11111112222 23445543221 12456778999999876
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=57.00 E-value=15 Score=36.24 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.1
Q ss_pred hcccCCCCCCCCCc
Q 012932 378 LGVNLKNFPTSAVP 391 (453)
Q Consensus 378 lG~Nl~n~p~s~~~ 391 (453)
.|.|++++|..-.+
T Consensus 299 yGMNf~~mPel~~~ 312 (339)
T 4ev6_A 299 YGMNFSYLPLANNP 312 (339)
T ss_dssp TTCCCSCCTTSSCT
T ss_pred ccCcCCCCCCccCc
Confidence 38899999987643
No 3
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=38.13 E-value=2.2e+02 Score=25.49 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=32.7
Q ss_pred eeEEEEEEeCCceEEEEEecCCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Ccceee
Q 012932 243 HQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLRDI 307 (453)
Q Consensus 243 hQafl~l~~~t~~e~~fvvk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~~l 307 (453)
....+.+....+ ...-.+.+.++ .|.++... ...|.|.+++-+++..+.. ||...+
T Consensus 135 ~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p--------~~~G~y~v~V~~~g~~I~gSPF~v~V 192 (212)
T 1qfh_A 135 DKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFKQVL 192 (212)
T ss_dssp CCEEEEEEECCS-EEEEEEEECSSSEEEEEEEE--------ESSEEEEEEEEETTEECBTCSEEEEE
T ss_pred CcEEEEEECCCC-ceeeEEEECCCCEEEEEEEc--------CCCEEEEEEEEECCEECCCCCeEEEE
Confidence 445555556444 33333444433 47665422 3468999999999888764 555444
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=36.35 E-value=16 Score=36.29 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=1.3
Q ss_pred hcccCCCCCCCC
Q 012932 378 LGVNLKNFPTSA 389 (453)
Q Consensus 378 lG~Nl~n~p~s~ 389 (453)
.|.|+.++|..-
T Consensus 323 yGMNf~~mPel~ 334 (363)
T 2iub_A 323 YGMNFEYMPELR 334 (363)
T ss_dssp CC----------
T ss_pred hcccCCCCCccc
Confidence 488999999865
No 5
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=30.99 E-value=3.5e+02 Score=25.60 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=34.1
Q ss_pred eeEEEEEEeCCceEEEEEecCCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Ccceee
Q 012932 243 HQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLRDI 307 (453)
Q Consensus 243 hQafl~l~~~t~~e~~fvvk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~~l 307 (453)
....+.+...+| +....+.+.++ .|.++... ...|.|.+++-+++..+.. ||.-.+
T Consensus 234 ~~l~v~i~~p~g-~~~~~v~d~~~G~y~v~y~p--------~~~G~y~i~V~~~g~~I~gsPf~v~v 291 (311)
T 1wlh_A 234 DKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGSPFKQVL 291 (311)
T ss_dssp SCEEEEEESCCS-EEEEEEEECSSSEEEEEEEE--------ECSEEEEEEEEETTEECTTCSEEEEE
T ss_pred CcEEEEEECCCC-CceeEEEECCCCEEEEEEEC--------CCCEeEEEEEEECCEECCCCCEEEEE
Confidence 345555666555 54444444433 47665422 3479999999999988864 555433
No 6
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=26.42 E-value=2.4e+02 Score=22.35 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=30.6
Q ss_pred eEEEEEEeCCceEEEEEecCCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-Ccce
Q 012932 244 QAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN-SLLR 305 (453)
Q Consensus 244 Qafl~l~~~t~~e~~fvvk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~-~~~~ 305 (453)
...+.+.+..+.+..-.+.++++ .|.++... ...|.|.+++.+++..+.. ||..
T Consensus 40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p--------~~~G~y~i~V~~~g~~V~gSPf~v 95 (100)
T 3rgh_A 40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIP--------LCPGAYTVTIKYGGQPVPNFPSKL 95 (100)
T ss_dssp CEEEEEECTTSCBCEEEEEECSSSEEEEEEEC--------CSSEEEEEEEEETTEECTTCSEEE
T ss_pred eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEe--------CCCeeEEEEEEECCEECCCCCEEE
Confidence 34445555444433333444443 46665421 2468899999999877753 5543
No 7
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=22.28 E-value=1.1e+02 Score=25.91 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=38.7
Q ss_pred CceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 89 DSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 89 ~~l~v~V~~v-lg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
..|..+|-|. .|.|+..+.|.+.+.. .. +... ..+.|+.. -++.+....+|.|++.|.+
T Consensus 10 ~~lstHVLDt~~G~PAagv~V~L~~~~------~~-l~~~--~Tn~DGR~--~~l~~~~~~~G~Y~L~F~t 69 (116)
T 3qva_A 10 STLSTHILDISTGTPAEGVTVSLSREG------ET-LANL--VTNAQGRI--ATFSAAPLPAGRYCLTAET 69 (116)
T ss_dssp BCEEEEEEETTTTEECTTCEEEEEETT------EE-EEEE--ECCTTSEE--CCSCSSCBCSSEEEEEECH
T ss_pred CCeeeEEeecCCCcCCCCCEEEEEEcc------Ee-EEEe--ccCCCCCc--cccccccCCCceEEEEEeH
Confidence 4688999876 6999999999987531 11 1111 23345533 1234567889999999976
No 8
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=21.55 E-value=1.5e+02 Score=25.05 Aligned_cols=65 Identities=25% Similarity=0.264 Sum_probs=38.7
Q ss_pred CCceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 88 KDSLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 88 ~~~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
+..|..+|-| ..|.|+..+.|.+.+.. .++-..+... ..+.|+..-.+. .......|.|++.|.+
T Consensus 3 ~~~lstHVLDt~~G~PAagv~V~L~~~~---~~~~~~l~~~--~Tn~DGR~~~l~-~~~~~~~G~Y~l~F~t 68 (114)
T 2g2n_A 3 QNILSVHILNQQTGKPAADVTVTLEKKA---DNGWLQLNTA--KTDKDGRIKALW-PEQTATTGDYRVVFKT 68 (114)
T ss_dssp -CCEEEEEEETTTTEECCSCEEEEEEEC---SSSEEEEEEE--ECCTTSEESCCS-CSSCCCSEEEEEEECH
T ss_pred CCCeEEEEecCCCcCCCCCCEEEEEEeC---CCCcEEEEEE--ecCCCCcccccc-CCCCCCceEEEEEEEh
Confidence 4678888886 57999999999997641 1111112111 233444321111 2446778999999876
No 9
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=21.02 E-value=3.6e+02 Score=22.34 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=43.1
Q ss_pred cceEEEEEEEEcCCCCCCCceeEEEEEEe-CCceEEEEE--ec-CCCceEEEEeccccchhhhhccCccEEEEEEEeccc
Q 012932 223 LQKLRLSFQMSTPLGNAFKPHQAFLRLRH-ETKVEHTFV--VG-SSGKKFEITLDFLGLVEKFFYLSGRYDIQLTVGDAV 298 (453)
Q Consensus 223 ~~~l~l~F~l~~~~g~~~~PhQafl~l~~-~t~~e~~fv--vk-~s~k~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~ 298 (453)
.+.|.+.|. . .-.++.+++.+ ++|. ++|- +. ..+..+.++++ . ..+|.|.+.+.-+
T Consensus 37 ~~~L~I~F~--~------~~~~vtItI~~~~tG~-iVY~~~v~~~~~~~~~I~L~--~------~~~G~Y~L~i~~~--- 96 (108)
T 3d33_A 37 GYLLTLKNA--S------PDRDMTIRITDMAKGG-VVYENDIPEVQSAYITISIA--N------FPAEEYKLEITGT--- 96 (108)
T ss_dssp TTEEEEEES--S------CCSEEEEEEEETTTCC-EEEEEEECGGGTTEEEEECT--T------SCSEEEEEEEEEE---
T ss_pred CCEEEEEEC--C------cCCCEEEEEEECCCCc-EEEEEeecCCCCcEEEEEcC--C------ccCceEEEEEEeC---
Confidence 458888872 1 23489999996 5554 4563 32 33456677664 2 3489999999887
Q ss_pred ccCCcceeeeeEEe
Q 012932 299 MENSLLRDIGYVEL 312 (453)
Q Consensus 299 ~~~~~~~~l~~i~L 312 (453)
.-.|-.|+++|
T Consensus 97 ---~~~~l~G~F~i 107 (108)
T 3d33_A 97 ---PSGHLTGYFTK 107 (108)
T ss_dssp ---SSCEEEEEEEE
T ss_pred ---CCCEEEEEEEe
Confidence 34566676655
No 10
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=18.66 E-value=94 Score=27.23 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=39.9
Q ss_pred CCceEEEEEec-cCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 88 KDSLKVKVNTV-LGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 88 ~~~l~v~V~~v-lg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
...|..+|-|. .|.|+..+.|.|.+.......-.. +... ..+.|+..-.+ +......+|.|++.|.+
T Consensus 25 ~~~LTtHVLDt~~G~PAagv~V~L~~~~~~~~~w~~-l~~~--~Tn~DGR~~~l-l~~~~~~~G~Y~L~F~t 92 (138)
T 3iwv_A 25 LSPLSTHVLNIAQGVPGANMTIVLHRLDPVSSAWNI-LTTG--ITNDDGRCPGL-ITKENFIAGVYKMRFET 92 (138)
T ss_dssp -CCEECCEEETTTTEECTTCEEEEEEECSSSCCEEE-EEEE--ECCTTSCCTTS-SCTTTCCSEEEEEEECH
T ss_pred CCCceEEEeecCCccCCCCCEEEEEEECCCCCCcEE-EEEE--ecCCCCCcCCc-cCcccCCCceEEEEEeh
Confidence 57899999876 699999999999865211111111 2111 23344432111 12446789999999876
Done!