Query 012932
Match_columns 453
No_of_seqs 159 out of 210
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 19:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012932.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012932hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 44.3 6.2 0.00045 27.9 2.5 26 363-391 14-39 (64)
2 d1f86a_ b.3.4.1 (A:) Transthyr 35.7 20 0.0015 28.3 4.7 64 90-158 2-66 (115)
3 d1vlfn1 b.3.5.1 (N:196-274) Tr 34.5 22 0.0016 26.0 4.4 45 100-158 12-56 (79)
4 d1cora_ a.3.1.1 (A:) Cytochrom 33.0 8.6 0.00062 27.7 1.8 18 30-47 65-82 (82)
5 d351ca_ a.3.1.1 (A:) Cytochrom 29.5 11 0.00082 27.0 1.9 18 30-47 65-82 (82)
6 d1qfha2 b.1.18.10 (A:750-857) 19.7 1.7E+02 0.012 21.8 8.0 68 228-304 12-85 (108)
7 d1uwya1 b.3.2.1 (A:297-403) Ca 17.1 1E+02 0.0076 22.6 5.6 51 92-158 3-53 (107)
8 d1c75a_ a.3.1.1 (A:) Cytochrom 15.9 30 0.0022 24.2 1.8 18 30-47 54-71 (71)
9 d1ix2a_ b.1.18.17 (A:) Copper 15.7 2E+02 0.014 20.9 8.8 21 144-165 71-91 (102)
10 d2c9qa1 b.1.18.17 (A:1-102) Co 15.6 2E+02 0.015 20.9 10.6 21 144-165 71-91 (102)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=44.34 E-value=6.2 Score=27.95 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCc
Q 012932 363 LTILPLFGFIIGLLRLGVNLKNFPTSAVP 391 (453)
Q Consensus 363 lvlapl~~Lli~W~~lG~Nl~n~p~s~~~ 391 (453)
++.+|.-++-. ..|.|+.++|....+
T Consensus 14 ~iflP~t~i~g---ifGMN~~~~P~~~~~ 39 (64)
T d2iuba2 14 TIFMPLTFIAG---IYGMNFEYMPELRWK 39 (64)
T ss_dssp HHHHHHHHHTT---SCC------------
T ss_pred HHHHHHHHHHh---hhccCCCCCCCCCcc
Confidence 34555544332 348899999987643
No 2
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.68 E-value=20 Score=28.28 Aligned_cols=64 Identities=23% Similarity=0.167 Sum_probs=38.5
Q ss_pred ceEEEEEe-ccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 90 SLKVKVNT-VLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 90 ~l~v~V~~-vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
+|..+|-| ..|.|+..+.|.+.+.. .++.-..+... ..|.|+.+-++ ....+..+|.|++.|.+
T Consensus 2 PiStHVLDt~~G~PA~gv~V~L~~~~--~~~~~~~i~~~--~Td~dGRi~~~-~~~~~~~~G~Y~l~F~~ 66 (115)
T d1f86a_ 2 PLMVKVLDAVRGSPAINVAVHVFRKA--ADDTWEPFASG--KTSESGELHGL-TTEEEFVEGIYKVEIDT 66 (115)
T ss_dssp CEEEEEEETTTTEECTTCEEEEEEEC--TTSCEEEEEEE--ECCTTSEECCS-CCTTTCCSEEEEEEECH
T ss_pred CceEEEecCCCCCCCCCCEEEEEEEC--CCCCEEEEEEE--EeCCCCcccCc-cCcccCCCeEEEEEEEH
Confidence 46677777 78999999999987642 11111222222 24445543222 12346788999999876
No 3
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=34.49 E-value=22 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 100 GSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 100 g~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
|+|++.++|.+.+ ++ ..+.. . ..+ ++-.|+++ +..+|.|.+.++.
T Consensus 12 G~~v~gA~V~L~~-----~~-~~v~~-t--~Td-~~G~F~f~----~l~~G~Y~l~is~ 56 (79)
T d1vlfn1 12 GDCFEGAKVVLKS-----GG-KEVAS-A--ETN-FFGEFKFD----ALDNGEYTVEIDA 56 (79)
T ss_dssp TEECTTCEEEEEE-----TT-EEEEE-E--ECC-TTSEEEEE----EECSEEEEEEEEE
T ss_pred CccccccEEEEEC-----CC-CeEEe-e--EEC-CCCcEEEE----ecCCCCEEEEEEE
Confidence 9999999999853 12 22111 1 223 33468887 4568999997653
No 4
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=32.98 E-value=8.6 Score=27.69 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=16.4
Q ss_pred CCChhHHHHHhhhhhccC
Q 012932 30 NLTGDKILGIAKFFLGIG 47 (453)
Q Consensus 30 ~i~~~q~~~~any~lsr~ 47 (453)
.|+.||+-.+++|++|.|
T Consensus 65 ~lsdeei~~la~Yi~SlK 82 (82)
T d1cora_ 65 PVTEEEAKILAEWILSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999875
No 5
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.51 E-value=11 Score=27.04 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.3
Q ss_pred CCChhHHHHHhhhhhccC
Q 012932 30 NLTGDKILGIAKFFLGIG 47 (453)
Q Consensus 30 ~i~~~q~~~~any~lsr~ 47 (453)
.|+++|+-.+++|++|.|
T Consensus 65 ~lsd~ei~~la~Yi~SlK 82 (82)
T d351ca_ 65 AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 499999999999999865
No 6
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=19.74 E-value=1.7e+02 Score=21.82 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=37.9
Q ss_pred EEEEEEc--CCCCCC--CceeEEEEEEeCCceEEEEEecCCCc-eEEEEeccccchhhhhccCccEEEEEEEecccccC-
Q 012932 228 LSFQMST--PLGNAF--KPHQAFLRLRHETKVEHTFVVGSSGK-KFEITLDFLGLVEKFFYLSGRYDIQLTVGDAVMEN- 301 (453)
Q Consensus 228 l~F~l~~--~~g~~~--~PhQafl~l~~~t~~e~~fvvk~s~k-~y~~~ld~~~l~~~f~~~sg~y~v~LivgD~~~~~- 301 (453)
++|.|.. ..|... -..+.-+.+....+ ++...+.+.+. .|+++.-. ...|.|.|++.+++..+..
T Consensus 12 ~tFtV~a~D~~G~~~~~G~~~~~v~i~gp~~-~~~~~v~d~~dGty~v~y~p--------~~~G~y~v~V~~~g~~I~gS 82 (108)
T d1qfha2 12 FTFTVAAKNKKGEVKTYGGDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSL--------VGNGRFSTGVKLNGKHIEGS 82 (108)
T ss_dssp EEEEEECBCTTSSBCSSCCCCEEEEEEECCS-EEEEEEEECSSSEEEEEEEE--------ESSEEEEEEEEETTEECBTC
T ss_pred EEEEEEeecCCCCeeccCCCeEEEEEECCCc-ccccEEEECCCCEEEEEEEE--------CcceeEEEEEEECCEECCCC
Confidence 5677765 233321 12344455555433 23333444433 57665421 3579999999999988864
Q ss_pred Ccc
Q 012932 302 SLL 304 (453)
Q Consensus 302 ~~~ 304 (453)
||.
T Consensus 83 PF~ 85 (108)
T d1qfha2 83 PFK 85 (108)
T ss_dssp SEE
T ss_pred CEE
Confidence 654
No 7
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.06 E-value=1e+02 Score=22.65 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=30.3
Q ss_pred EEEEEeccCCCCCCceEEEEEeEeecCCCceEEeccccccCCCCceEEecCCCCCCCceeEEEEEEE
Q 012932 92 KVKVNTVLGSHAPPLTVTLVRAFSSSARDNSIIENQELKFDPQDAVYFLDDLPASFDVGEYIFVFKM 158 (453)
Q Consensus 92 ~v~V~~vlg~~~~~~~V~~~~~~~~~~~~~~v~~~~~l~~~~~~~~y~l~~~~~k~~~G~Y~~~~~v 158 (453)
+=+|+|--|+|++.++|.+... + . ... ..++++..|.++ ...|.|.+.++.
T Consensus 3 ~G~V~D~~g~pi~~A~V~i~~~-----~-~----~~~-~~td~~G~f~~~-----~~~g~Y~l~vs~ 53 (107)
T d1uwya1 3 KGQVFDQNGNPLPNVIVEVQDR-----K-H----ICP-YRTNKYGEYYLL-----LLPGSYIINVTV 53 (107)
T ss_dssp EEEEECTTSCBCCSCEEEETTC-----C-C----SSC-CBCCTTCEEEEC-----CCSEEEEEEEEC
T ss_pred EEEEECCCCCCcCcEEEEEEcc-----c-c----cce-eecchhheeeee-----cCCccEEEEEEE
Confidence 3468899999999999986311 1 1 011 112233356553 346999987654
No 8
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}
Probab=15.89 E-value=30 Score=24.21 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=16.3
Q ss_pred CCChhHHHHHhhhhhccC
Q 012932 30 NLTGDKILGIAKFFLGIG 47 (453)
Q Consensus 30 ~i~~~q~~~~any~lsr~ 47 (453)
.|+.||+..+++|+.+.|
T Consensus 54 ~Ls~~ei~~i~~Yl~~~K 71 (71)
T d1c75a_ 54 IAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp SSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 499999999999999875
No 9
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}
Probab=15.71 E-value=2e+02 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCCCceeEEEEEEEeeccccc
Q 012932 144 PASFDVGEYIFVFKMLVQDSEQ 165 (453)
Q Consensus 144 ~~k~~~G~Y~~~~~v~~~d~~~ 165 (453)
...+.+|.|.+...+...| +|
T Consensus 71 ~~~l~~G~Y~V~wrv~s~D-GH 91 (102)
T d1ix2a_ 71 REPLPAGTYRVDWRAVSSD-TH 91 (102)
T ss_dssp SSCCCSEEEEEEEEECCTT-CC
T ss_pred cCCCCCceEEEEEEEEcCC-CC
Confidence 3467889999999885544 45
No 10
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=15.58 E-value=2e+02 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=15.2
Q ss_pred CCCCCceeEEEEEEEeeccccc
Q 012932 144 PASFDVGEYIFVFKMLVQDSEQ 165 (453)
Q Consensus 144 ~~k~~~G~Y~~~~~v~~~d~~~ 165 (453)
...+.+|.|.+...+...| +|
T Consensus 71 ~~~l~~G~Y~V~wrvvs~D-GH 91 (102)
T d2c9qa1 71 ASPLTAGTYKVDWRAVSSD-TH 91 (102)
T ss_dssp SSCCCSEEEEEEEEECCTT-CC
T ss_pred CCCCCCceEEEEEEEEecC-CC
Confidence 3477899999998875543 44
Done!