BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012933
         (453 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
           Mutant) From Helicobacter Pylori Complexed With L-Lysine
          Length = 425

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 37  CDKIEEIIRHVGEEAKENRIAFS-------------KLKVLILDYLPTLTSFCLENYTLE 83
           C  I EI R +    K  RI FS             KL +L L+    +    +E     
Sbjct: 86  CVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQS 145

Query: 84  FPSLERVSMTHCPNMKTFSHGILSTP-KLHKVQVTEKEEGELHHW 127
                R+S+   PN+   +H  LST  K +K  V EKE  E+  W
Sbjct: 146 LGIKARISIRINPNIDAKTHPYLSTGLKENKFGVGEKEALEMFLW 190


>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
 pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
           Streptococc Pneumoniae
          Length = 311

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 153 QLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212
           Q   + H K I     LP+  +N   R+VV+         P  +LR  ++   + V+ C 
Sbjct: 119 QEGMYQHFKAIADASDLPIIIYNIPGRVVVE-------LTPETMLRLADHPNIIGVKECT 171

Query: 213 SIEEVLHLEE 222
           S+  + +L E
Sbjct: 172 SLANMAYLIE 181


>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
           From Cichorium Intybus In Complex With 1-Kestose
          Length = 543

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLES--------LEISECSKLQKLVPPSW 368
           SFPR  W++ +G   +Q   +E +E  +   NL++        LEI   +  Q  V  S+
Sbjct: 312 SFPRALWIDRNGKQLIQWPVEEIEELRQNQVNLQNKNLKPGSVLEIHGIAASQADVTISF 371

Query: 369 HLENLEALEVSKC-----HGLINLLTFSTSESLVNLGRMMIADCKMIEQ------IIQLQ 417
            LE L+  EV          L N    S+  +L   G + +A   + EQ      + Q Q
Sbjct: 372 KLEGLKEAEVLDTTLVDPQALCNERGASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQ 431

Query: 418 VGEEAKDCNVFKELSCETMSKN 439
           +G        +  L C  +S++
Sbjct: 432 LGR-------YSVLMCSDLSRS 446


>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus
 pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With Sucrose
 pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With Fructose
 pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With 2,5
           Dideoxy-2,5-Immino-D-Mannitol
          Length = 543

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLES--------LEISECSKLQKLVPPSW 368
           SFPR  W++ +G   +Q   +E +E  +   NL++        LEI   +  Q  V  S+
Sbjct: 312 SFPRALWIDRNGKQLIQWPVEEIEELRQNQVNLQNKNLKPGSVLEIHGIAASQADVTISF 371

Query: 369 HLENLEALEVSKC-----HGLINLLTFSTSESLVNLGRMMIADCKMIEQ------IIQLQ 417
            LE L+  EV          L N    S+  +L   G + +A   + EQ      + Q Q
Sbjct: 372 KLEGLKEAEVLDTTLVDPQALCNERGASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQ 431

Query: 418 VGEEAKDCNVFKELSCETMSKN 439
           +G        +  L C  +S++
Sbjct: 432 LGR-------YSVLMCSDLSRS 446


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,187,503
Number of Sequences: 62578
Number of extensions: 529668
Number of successful extensions: 1166
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 4
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)