Query 012933
Match_columns 453
No_of_seqs 157 out of 2067
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 215.4 19.2 314 27-411 589-907 (1153)
2 PLN00113 leucine-rich repeat r 99.9 5.6E-22 1.2E-26 217.8 14.9 354 5-408 189-558 (968)
3 PLN00113 leucine-rich repeat r 99.9 8.1E-22 1.7E-26 216.6 14.7 384 5-440 94-510 (968)
4 PLN03210 Resistant to P. syrin 99.9 4.7E-21 1E-25 211.5 18.4 346 22-445 553-909 (1153)
5 KOG4194 Membrane glycoprotein 99.7 8.5E-18 1.8E-22 161.6 2.7 56 60-118 79-134 (873)
6 KOG0444 Cytoskeletal regulator 99.7 6E-19 1.3E-23 170.6 -6.1 345 23-443 28-376 (1255)
7 KOG4194 Membrane glycoprotein 99.6 4.3E-17 9.3E-22 156.8 0.2 148 29-210 80-230 (873)
8 KOG0444 Cytoskeletal regulator 99.6 2.6E-17 5.7E-22 159.4 -7.2 313 24-386 52-377 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 3.3E-17 7E-22 151.1 -10.5 351 8-409 72-540 (565)
10 KOG0472 Leucine-rich repeat pr 99.4 1.8E-15 4E-20 139.7 -11.4 230 24-299 65-307 (565)
11 KOG0618 Serine/threonine phosp 99.4 6E-14 1.3E-18 142.1 -2.0 225 174-441 240-488 (1081)
12 KOG4341 F-box protein containi 99.3 1.7E-14 3.8E-19 134.1 -7.2 294 60-410 139-439 (483)
13 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4.1E-16 127.1 13.9 257 29-386 203-459 (788)
14 KOG4341 F-box protein containi 99.3 6.2E-14 1.3E-18 130.5 -4.1 91 319-411 320-415 (483)
15 KOG0618 Serine/threonine phosp 99.2 1.1E-12 2.4E-17 133.1 -2.0 128 235-382 359-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.1 3.7E-10 7.9E-15 117.6 12.4 256 60-409 202-457 (788)
17 KOG4658 Apoptotic ATPase [Sign 99.1 5.4E-11 1.2E-15 126.2 4.8 293 23-389 567-865 (889)
18 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3E-15 123.2 6.1 324 26-411 522-861 (889)
19 PRK15370 E3 ubiquitin-protein 99.0 4.3E-10 9.2E-15 117.7 8.6 72 28-118 179-250 (754)
20 PRK15370 E3 ubiquitin-protein 98.9 5.3E-09 1.2E-13 109.5 9.0 246 86-408 179-426 (754)
21 KOG0617 Ras suppressor protein 98.6 1.1E-09 2.3E-14 90.5 -4.9 84 22-118 28-111 (264)
22 cd00116 LRR_RI Leucine-rich re 98.6 6.8E-09 1.5E-13 99.5 -0.9 39 317-356 276-316 (319)
23 cd00116 LRR_RI Leucine-rich re 98.6 4.3E-09 9.3E-14 100.9 -2.5 12 318-329 220-231 (319)
24 KOG3207 Beta-tubulin folding c 98.6 1.7E-08 3.7E-13 95.2 1.0 216 24-272 118-336 (505)
25 KOG3207 Beta-tubulin folding c 98.5 4.3E-08 9.3E-13 92.5 0.9 215 139-378 113-333 (505)
26 KOG4237 Extracellular matrix p 98.4 2.4E-08 5.3E-13 93.0 -1.1 84 315-405 270-354 (498)
27 KOG0617 Ras suppressor protein 98.4 9.2E-09 2E-13 85.1 -4.8 137 22-192 51-189 (264)
28 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.6E-13 91.7 -5.6 63 288-358 312-374 (419)
29 KOG4237 Extracellular matrix p 98.3 1.9E-07 4.2E-12 87.1 0.7 86 258-356 270-355 (498)
30 PRK15386 type III secretion pr 98.2 7E-06 1.5E-10 79.1 9.9 60 174-251 51-110 (426)
31 PF13855 LRR_8: Leucine rich r 98.1 4.3E-06 9.4E-11 58.6 5.0 58 319-381 1-59 (61)
32 KOG1947 Leucine rich repeat pr 98.0 3.4E-07 7.5E-12 92.9 -3.2 41 373-413 403-443 (482)
33 KOG2120 SCF ubiquitin ligase, 98.0 2.9E-07 6.4E-12 82.9 -3.2 165 58-247 209-375 (419)
34 KOG1947 Leucine rich repeat pr 98.0 6.9E-07 1.5E-11 90.7 -2.1 121 146-277 187-310 (482)
35 KOG1259 Nischarin, modulator o 98.0 3.9E-06 8.4E-11 75.9 2.9 126 290-441 285-411 (490)
36 PF14580 LRR_9: Leucine-rich r 98.0 2.7E-06 6E-11 72.9 1.4 87 316-408 61-151 (175)
37 PF14580 LRR_9: Leucine-rich r 97.9 5.6E-06 1.2E-10 71.1 3.0 107 317-438 40-149 (175)
38 PF13855 LRR_8: Leucine rich r 97.8 2.8E-05 6.1E-10 54.4 4.4 59 347-408 1-60 (61)
39 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3E-10 83.4 2.7 158 26-207 121-281 (699)
40 PRK15386 type III secretion pr 97.7 0.00014 3.1E-09 70.2 9.3 165 197-411 48-214 (426)
41 KOG3665 ZYG-1-like serine/thre 97.3 3.4E-05 7.4E-10 80.5 -1.4 109 147-272 122-230 (699)
42 KOG1259 Nischarin, modulator o 97.1 0.00013 2.8E-09 66.2 0.5 115 134-273 294-410 (490)
43 KOG0532 Leucine-rich repeat (L 97.1 5.1E-05 1.1E-09 74.5 -2.8 125 58-211 120-244 (722)
44 KOG2982 Uncharacterized conser 97.0 0.00036 7.7E-09 63.5 1.9 214 26-275 44-262 (418)
45 PF12799 LRR_4: Leucine Rich r 96.8 0.00097 2.1E-08 42.9 2.3 38 348-387 2-39 (44)
46 COG4886 Leucine-rich repeat (L 96.7 0.00087 1.9E-08 66.3 2.4 180 21-248 110-290 (394)
47 COG4886 Leucine-rich repeat (L 96.6 0.0021 4.6E-08 63.5 4.6 173 83-299 114-287 (394)
48 PLN03150 hypothetical protein; 96.4 0.006 1.3E-07 63.9 6.4 69 138-212 433-501 (623)
49 KOG2982 Uncharacterized conser 96.4 0.0044 9.5E-08 56.6 4.3 215 108-355 70-287 (418)
50 PLN03150 hypothetical protein; 96.3 0.0055 1.2E-07 64.2 5.6 109 61-188 420-528 (623)
51 PF12799 LRR_4: Leucine Rich r 96.3 0.0035 7.5E-08 40.4 2.6 40 319-364 1-40 (44)
52 KOG0532 Leucine-rich repeat (L 96.1 0.00082 1.8E-08 66.4 -2.0 131 21-186 115-245 (722)
53 KOG1909 Ran GTPase-activating 95.5 0.0053 1.1E-07 57.3 1.1 14 25-38 28-41 (382)
54 KOG1909 Ran GTPase-activating 94.9 0.011 2.3E-07 55.3 1.1 230 24-273 55-309 (382)
55 KOG1644 U2-associated snRNP A' 94.9 0.055 1.2E-06 46.9 5.2 88 315-408 60-151 (233)
56 KOG1859 Leucine-rich repeat pr 94.9 0.00062 1.4E-08 69.1 -7.5 37 146-186 83-120 (1096)
57 KOG3864 Uncharacterized conser 94.8 0.0022 4.8E-08 55.2 -3.2 87 320-411 102-190 (221)
58 KOG3864 Uncharacterized conser 94.8 0.017 3.7E-07 49.9 2.1 74 140-216 118-191 (221)
59 KOG1859 Leucine-rich repeat pr 94.3 0.006 1.3E-07 62.2 -2.0 106 317-440 185-290 (1096)
60 KOG2739 Leucine-rich acidic nu 94.2 0.028 6.1E-07 50.5 2.0 113 286-410 40-156 (260)
61 KOG2739 Leucine-rich acidic nu 93.5 0.024 5.3E-07 50.9 0.4 134 236-384 19-156 (260)
62 KOG1644 U2-associated snRNP A' 92.2 0.16 3.6E-06 44.0 3.6 68 20-96 57-124 (233)
63 PF13306 LRR_5: Leucine rich r 91.4 1.3 2.8E-05 35.6 8.2 31 320-355 59-89 (129)
64 PF00560 LRR_1: Leucine Rich R 91.4 0.11 2.4E-06 27.7 1.1 15 321-336 2-16 (22)
65 KOG4579 Leucine-rich repeat (L 91.0 0.016 3.4E-07 47.0 -3.5 25 134-158 87-111 (177)
66 PF13306 LRR_5: Leucine rich r 90.9 1.6 3.4E-05 35.1 8.2 40 318-365 80-119 (129)
67 PF13504 LRR_7: Leucine rich r 90.8 0.14 3.1E-06 25.3 1.1 17 27-44 1-17 (17)
68 smart00367 LRR_CC Leucine-rich 89.0 0.069 1.5E-06 29.8 -1.0 22 429-450 2-23 (26)
69 KOG2123 Uncharacterized conser 88.5 0.014 3E-07 53.0 -6.2 103 288-405 18-125 (388)
70 KOG4579 Leucine-rich repeat (L 88.5 0.051 1.1E-06 44.1 -2.4 55 60-117 54-108 (177)
71 KOG0531 Protein phosphatase 1, 88.3 0.17 3.7E-06 50.4 0.5 86 314-410 90-175 (414)
72 KOG0531 Protein phosphatase 1, 87.4 0.31 6.6E-06 48.6 1.8 103 58-186 94-197 (414)
73 KOG2123 Uncharacterized conser 86.3 0.051 1.1E-06 49.4 -3.9 53 148-210 20-72 (388)
74 COG5238 RNA1 Ran GTPase-activa 81.3 0.81 1.7E-05 41.8 1.5 171 25-211 28-224 (388)
75 smart00370 LRR Leucine-rich re 77.2 1.6 3.5E-05 24.1 1.4 21 319-340 2-22 (26)
76 smart00369 LRR_TYP Leucine-ric 77.2 1.6 3.5E-05 24.1 1.4 21 319-340 2-22 (26)
77 COG5238 RNA1 Ran GTPase-activa 64.7 5.5 0.00012 36.6 2.5 142 54-211 87-252 (388)
78 PF13516 LRR_6: Leucine Rich r 46.8 13 0.00029 19.8 1.3 15 26-41 1-15 (24)
79 smart00364 LRR_BAC Leucine-ric 41.3 17 0.00036 20.3 1.1 16 348-364 3-18 (26)
80 smart00365 LRR_SD22 Leucine-ri 30.3 51 0.0011 18.3 1.9 11 319-329 2-12 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.5e-21 Score=215.38 Aligned_cols=314 Identities=17% Similarity=0.232 Sum_probs=160.0
Q ss_pred cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 106 (453)
++|+.|.+.++ .++.+|..+. +.+|++|++.+ .+++.++.+ ...+++|+.++++++..++.+|. +.
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f~---------~~~L~~L~L~~-s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNFR---------PENLVKLQMQG-SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcCC---------ccCCcEEECcC-ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cc
Confidence 45777777775 5677776542 56777777776 345555444 45677777777777766666653 55
Q ss_pred CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
.+++|+.|++.+|..+ ..++..+..+++|+.|++++|..+..++... .+++|++|++++|.
T Consensus 655 ~l~~Le~L~L~~c~~L--------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 655 MATNLETLKLSDCSSL--------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSGCS 715 (1153)
T ss_pred cCCcccEEEecCCCCc--------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-----CCCCCCEEeCCCCC
Confidence 6777777777766443 2344455566777777777777666655432 35677777777776
Q ss_pred CccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc-----CCCcccCC
Q 012933 187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN-----FTGNIIEL 261 (453)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-----~~~~~~~l 261 (453)
.+... |. ..++|+.|+++++. +..++..- .+++|++|.+.++....- +. .+.....+
T Consensus 716 ~L~~~-p~----~~~nL~~L~L~~n~-i~~lP~~~-----------~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 716 RLKSF-PD----ISTNISWLDLDETA-IEEFPSNL-----------RLENLDELILCEMKSEKL-WERVQPLTPLMTMLS 777 (1153)
T ss_pred Ccccc-cc----ccCCcCeeecCCCc-cccccccc-----------cccccccccccccchhhc-cccccccchhhhhcc
Confidence 55433 21 23566777766542 33332200 113444444433221100 00 00011123
Q ss_pred CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933 262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE 341 (453)
Q Consensus 262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 341 (453)
++|+.|++++|+.+..+|.. ++.+++|+.|++++|..+. .++....+++|+.|++++|..+..++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~-------~LP~~~~L~sL~~L~Ls~c~~L~~~p----- 842 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLE-------TLPTGINLESLESLDLSGCSRLRTFP----- 842 (1153)
T ss_pred ccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcC-------eeCCCCCccccCEEECCCCCcccccc-----
Confidence 34444455444444444433 3444444445444443332 11111134455555555554444333
Q ss_pred ccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhH
Q 012933 342 SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE 411 (453)
Q Consensus 342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~ 411 (453)
...++|+.|++++ +.++.+|..+..+++|+.|++.+|++++.++. ....+++|+.+++.+|++++
T Consensus 843 --~~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 --DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred --ccccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 1223444455544 34444444444455555555555555554443 12334445555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5.6e-22 Score=217.82 Aligned_cols=354 Identities=17% Similarity=0.113 Sum_probs=179.7
Q ss_pred chhhhhhcccchhhcc-cccCcccccceEEeccccchhhhhcccccccccccccccccceeecccccccccccccccccc
Q 012933 5 LFYFFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLE 83 (453)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (453)
.+.++++.++...-.. ..++.+++|++|++++|...+.+|..+.+ +++|++|+++++.--...+.. ...
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p~~--l~~ 258 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG--------LTSLNHLDLVYNNLTGPIPSS--LGN 258 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc--------CCCCCEEECcCceeccccChh--HhC
Confidence 3455666655433222 23677899999999998655567776666 889999999885422233322 567
Q ss_pred CCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933 84 FPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (453)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 163 (453)
+++|++|++.+|.....+|..+..+++|++|++++|.- ...++..+..+++|++|+++++.....+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL--------------SGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee--------------ccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 88999999988765556777777888999999886421 1223344455666777777666532222
Q ss_pred ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcc-ccc----------cc----ccC
Q 012933 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL-EEQ----------NA----DKE 228 (453)
Q Consensus 164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~----------~~----~~~ 228 (453)
+... ..+++|++|++++|. +....|. .+..+++|+.|+++++.-...++.. ... +. ...
T Consensus 325 ~~~~----~~l~~L~~L~L~~n~-l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 325 PVAL----TSLPRLQVLQLWSNK-FSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred ChhH----hcCCCCCEEECcCCC-CcCcCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 2221 335666777766653 3333233 2556666666666654321111100 000 00 000
Q ss_pred CCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccc
Q 012933 229 HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQV 308 (453)
Q Consensus 229 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l 308 (453)
....+ ++|++|++.++.--.. .+..+..+++|+.|+++++.-....+.. ...+++|+.|++++|....
T Consensus 399 ~~~~~-~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~~~~----- 466 (968)
T PLN00113 399 SLGAC-RSLRRVRLQDNSFSGE---LPSEFTKLPLVYFLDISNNNLQGRINSR---KWDMPSLQMLSLARNKFFG----- 466 (968)
T ss_pred HHhCC-CCCCEEECcCCEeeeE---CChhHhcCCCCCEEECcCCcccCccChh---hccCCCCcEEECcCceeee-----
Confidence 01112 5666666665542222 2344555666666666654432222221 3345566666665553221
Q ss_pred cccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933 309 QPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL 388 (453)
Q Consensus 309 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 388 (453)
.++.....++|+.|++++| .+.......+ ..+++|+.|++++|.-...+|..+..+++|++|++++|.-...+|
T Consensus 467 --~~p~~~~~~~L~~L~ls~n-~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 467 --GLPDSFGSKRLENLDLSRN-QFSGAVPRKL---GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred --ecCcccccccceEEECcCC-ccCCccChhh---hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 1111112244555555554 2222211222 344555555555543333444444445555555554432211222
Q ss_pred CCCcccccCCcceEEEcccc
Q 012933 389 TFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 389 ~~~~~~~l~~L~~L~i~~C~ 408 (453)
. ....+++|++|++++|.
T Consensus 541 ~--~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 541 A--SFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred h--hHhCcccCCEEECCCCc
Confidence 1 22344555555555544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.1e-22 Score=216.55 Aligned_cols=384 Identities=16% Similarity=0.102 Sum_probs=182.0
Q ss_pred chhhhhhcccchhhcccc--cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccc
Q 012933 5 LFYFFNIHTHAHTFAYFQ--VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (453)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 82 (453)
.+-.+++.++...-.++. +..+++|++|+++++...+.+|.. . +++|++|+++++.--...+.. ..
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~--------l~~L~~L~Ls~n~~~~~~p~~--~~ 161 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S--------IPNLETLDLSNNMLSGEIPND--IG 161 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--c--------cCCCCEEECcCCcccccCChH--Hh
Confidence 344555554432212222 336778888888887544444431 2 667777777764321122222 45
Q ss_pred cCCCcceEeecCCCCccccccCccCCCCcceEEecccccc-------------ccccccCCccchhHHHHHHhhcCCCCc
Q 012933 83 EFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEG-------------ELHHWEGNKLNSTIQKCYEEMIGFRDM 149 (453)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~~~~L 149 (453)
.+++|++|++++|.....+|..+.++++|++|++++|.-. ..+.+.++ .....++..+..+++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN---NLSGEIPYEIGGLTSL 238 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC---ccCCcCChhHhcCCCC
Confidence 5677777777776544456666666777777777654211 00111110 1111233334444555
Q ss_pred cEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCC
Q 012933 150 EYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEH 229 (453)
Q Consensus 150 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 229 (453)
++|+++++.....++... ..+++|++|+++++. +.+..|.. +..+++|++|++++|.-...++. .
T Consensus 239 ~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~---------~ 303 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSL----GNLKNLQYLFLYQNK-LSGPIPPS-IFSLQKLISLDLSDNSLSGEIPE---------L 303 (968)
T ss_pred CEEECcCceeccccChhH----hCCCCCCEEECcCCe-eeccCchh-HhhccCcCEEECcCCeeccCCCh---------h
Confidence 555555443211222111 234555555555442 22222222 44455555555555422111111 1
Q ss_pred CCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc-cc--
Q 012933 230 RGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL-AH-- 306 (453)
Q Consensus 230 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-- 306 (453)
...+ ++|++|++.++.-...+ +..+..+++|+.|++++|.....+|.. ++.+++|+.|+++++.-... ++
T Consensus 304 ~~~l-~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 304 VIQL-QNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred HcCC-CCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeEeeCChhH
Confidence 1112 55666666555422221 344556666777777665543333332 45555666666665521110 00
Q ss_pred --------------cccccc-cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCC
Q 012933 307 --------------QVQPLF-DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE 371 (453)
Q Consensus 307 --------------~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 371 (453)
.+...+ +....+++|+.|++++|. ++......+ ..+++|+.|+++++.-...++..+..++
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhH---hcCCCCCEEECcCCcccCccChhhccCC
Confidence 000000 112344555555555552 322222222 4556666666666432233344445566
Q ss_pred CCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
+|+.|++++|.-...+|.. ...++|++|++++|..- +..+..+..++.|+.|+++++.
T Consensus 453 ~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFS--------GAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred CCcEEECcCceeeeecCcc---cccccceEEECcCCccC--------CccChhhhhhhccCEEECcCCc
Confidence 6666666665443333321 12356666666666532 2223345567888888888774
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.7e-21 Score=211.48 Aligned_cols=346 Identities=18% Similarity=0.250 Sum_probs=228.6
Q ss_pred ccCcccccceEEecccc--ch----hhhhcccccccccccccc-cccceeeccccccccccccccccccCCCcceEeecC
Q 012933 22 QVGIPSSLVNLNVSRCD--KI----EEIIRHVGEEAKENRIAF-SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTH 94 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~--~l----~~i~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 94 (453)
+|..+++|+.|.++... .. -.+|.++.. + ++|+.|.+.+.+ ++.++.. ..+.+|+.|++.+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--------lp~~Lr~L~~~~~~-l~~lP~~---f~~~~L~~L~L~~ 620 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--------LPPKLRLLRWDKYP-LRCMPSN---FRPENLVKLQMQG 620 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhh--------cCcccEEEEecCCC-CCCCCCc---CCccCCcEEECcC
Confidence 35667888888776532 10 123333222 3 357788777643 4555443 2457788888887
Q ss_pred CCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCcc
Q 012933 95 CPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFF 174 (453)
Q Consensus 95 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l 174 (453)
+ ++..++.++..+++|++++++++..+..+ + .+..+++|++|++.+|..+..++... ..+
T Consensus 621 s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--------------p-~ls~l~~Le~L~L~~c~~L~~lp~si----~~L 680 (1153)
T PLN03210 621 S-KLEKLWDGVHSLTGLRNIDLRGSKNLKEI--------------P-DLSMATNLETLKLSDCSSLVELPSSI----QYL 680 (1153)
T ss_pred c-cccccccccccCCCCCEEECCCCCCcCcC--------------C-ccccCCcccEEEecCCCCccccchhh----hcc
Confidence 5 47777777777888888888765433221 1 13446788888888887776666544 557
Q ss_pred CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
++|++|++++|..++.+ |... ++++|+.|++++|..+..++. ..++|++|.+.+.. ++.++
T Consensus 681 ~~L~~L~L~~c~~L~~L-p~~i--~l~sL~~L~Lsgc~~L~~~p~-------------~~~nL~~L~L~~n~-i~~lP-- 741 (1153)
T PLN03210 681 NKLEDLDMSRCENLEIL-PTGI--NLKSLYRLNLSGCSRLKSFPD-------------ISTNISWLDLDETA-IEEFP-- 741 (1153)
T ss_pred CCCCEEeCCCCCCcCcc-CCcC--CCCCCCEEeCCCCCCcccccc-------------ccCCcCeeecCCCc-ccccc--
Confidence 78888888888777665 3332 677888888888876655432 22677888877654 44442
Q ss_pred CCcccCCCCccEEeeecCCCCcee----ccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCC
Q 012933 255 TGNIIELPELQHLTIQNCPDMETF----ISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH 330 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 330 (453)
. ...+++|+.|.+.++...... +.........++|+.|++++|..+.. ....++.+++|+.|++++|.
T Consensus 742 -~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~------lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 742 -S-NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE------LPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred -c-cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc------cChhhhCCCCCCEEECCCCC
Confidence 2 225677888877765421110 00000012235788888888754431 11235678899999999998
Q ss_pred CcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933 331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI 410 (453)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 410 (453)
.++.+|.. ..+++|+.|++++|..++.+|.. .++|++|++++ +.++.+|. ....+++|++|++.+|.++
T Consensus 814 ~L~~LP~~-----~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 814 NLETLPTG-----INLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CcCeeCCC-----CCccccCEEECCCCCcccccccc---ccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCc
Confidence 88888754 36889999999999988887754 36888999977 67888775 3567899999999999999
Q ss_pred HHHHhhccCCccCCCceeccccchhhhhhHHHHHH
Q 012933 411 EQIIQLQVGEEAKDCNVFKELSCETMSKNEDLLSR 445 (453)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 445 (453)
+.+ ......++.|+.+++++|+.|.+-
T Consensus 883 ~~l--------~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 883 QRV--------SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred Ccc--------CcccccccCCCeeecCCCcccccc
Confidence 765 334456788888888888877643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=8.5e-18 Score=161.59 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=37.3
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEecc
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTE 118 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 118 (453)
.-+.|++++ +++..+... ....+|+|+++++.++ .++.+|.......+++.|++..
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~-~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFE-FFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred ceeeeeccc-cccccCcHH-HHhcCCcceeeeeccc-hhhhcccccccccceeEEeeec
Confidence 456677776 555555444 2456778888888774 5777777666666677777773
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=6e-19 Score=170.62 Aligned_cols=345 Identities=17% Similarity=0.204 Sum_probs=222.1
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc--c
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK--T 100 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~ 100 (453)
..++++++.|.|.. .++.++|.+.+. +.+|+.|.+.+ +++..+.-. ...+|.|+.+.++.+. ++ .
T Consensus 28 v~qMt~~~WLkLnr-t~L~~vPeEL~~--------lqkLEHLs~~H-N~L~~vhGE--Ls~Lp~LRsv~~R~N~-LKnsG 94 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR-TKLEQVPEELSR--------LQKLEHLSMAH-NQLISVHGE--LSDLPRLRSVIVRDNN-LKNSG 94 (1255)
T ss_pred HHHhhheeEEEech-hhhhhChHHHHH--------Hhhhhhhhhhh-hhhHhhhhh--hccchhhHHHhhhccc-cccCC
Confidence 45688999999999 589999998887 89999999998 556655333 6779999999999864 44 6
Q ss_pred cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933 101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL 180 (453)
Q Consensus 101 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L 180 (453)
+|..+..+..|..|+++ .+.....|..+...+++-.|+++++. +..+|... + ..+..|-.|
T Consensus 95 iP~diF~l~dLt~lDLS---------------hNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~l-f--inLtDLLfL 155 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLS---------------HNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSL-F--INLTDLLFL 155 (1255)
T ss_pred CCchhcccccceeeecc---------------hhhhhhcchhhhhhcCcEEEEcccCc-cccCCchH-H--HhhHhHhhh
Confidence 99999999999999999 66677788888888888899998876 77666544 1 225566677
Q ss_pred EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933 181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE 260 (453)
Q Consensus 181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 260 (453)
++++. .+..++| . ...+.+|+.|.+++++-.-. .+. ..+.+ ++|+.|++++-.. ...+.|..+-.
T Consensus 156 DLS~N-rLe~LPP-Q-~RRL~~LqtL~Ls~NPL~hf--QLr-------QLPsm-tsL~vLhms~TqR--Tl~N~Ptsld~ 220 (1255)
T KOG0444|consen 156 DLSNN-RLEMLPP-Q-IRRLSMLQTLKLSNNPLNHF--QLR-------QLPSM-TSLSVLHMSNTQR--TLDNIPTSLDD 220 (1255)
T ss_pred ccccc-hhhhcCH-H-HHHHhhhhhhhcCCChhhHH--HHh-------cCccc-hhhhhhhcccccc--hhhcCCCchhh
Confidence 88873 5665543 3 77788899999988643211 111 01112 5666666665321 11234566677
Q ss_pred CCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCC
Q 012933 261 LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEND 340 (453)
Q Consensus 261 l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 340 (453)
+.+|..++++. +++...|.. +-.+++|++|++++++.-... ...+...+|++|.++.+ .++.+|...
T Consensus 221 l~NL~dvDlS~-N~Lp~vPec---ly~l~~LrrLNLS~N~iteL~-------~~~~~W~~lEtLNlSrN-QLt~LP~av- 287 (1255)
T KOG0444|consen 221 LHNLRDVDLSE-NNLPIVPEC---LYKLRNLRRLNLSGNKITELN-------MTEGEWENLETLNLSRN-QLTVLPDAV- 287 (1255)
T ss_pred hhhhhhccccc-cCCCcchHH---HhhhhhhheeccCcCceeeee-------ccHHHHhhhhhhccccc-hhccchHHH-
Confidence 78888888864 566666655 566778888888886432211 11234456777777666 466666544
Q ss_pred cccccCCCccceeeccCCCcc--ccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhcc
Q 012933 341 ESNKAFANLESLEISECSKLQ--KLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQV 418 (453)
Q Consensus 341 ~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~ 418 (453)
..+++|+.|.+.+ ++++ .+|.+++.+.+|+.++.++ ++++-+|. ....|+.|+.|.+.+..-+ ++
T Consensus 288 ---cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~~NrLi-TL----- 354 (1255)
T KOG0444|consen 288 ---CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLDHNRLI-TL----- 354 (1255)
T ss_pred ---hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccccccee-ec-----
Confidence 4666666666665 4433 4666666666666666655 55555444 2334455555554332222 11
Q ss_pred CCccCCCceeccccchhhhhhHHHH
Q 012933 419 GEEAKDCNVFKELSCETMSKNEDLL 443 (453)
Q Consensus 419 ~~~~~~~~~~~~l~~l~l~~~~~~~ 443 (453)
+..|--++.|+.|+++.+|+|+
T Consensus 355 ---PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 355 ---PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhhhhhcCCcceeeccCCcCcc
Confidence 2223345666666666666653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=4.3e-17 Score=156.81 Aligned_cols=148 Identities=17% Similarity=0.249 Sum_probs=79.3
Q ss_pred cceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCcc
Q 012933 29 LVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGIL 106 (453)
Q Consensus 29 L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~ 106 (453)
-+.|+++++ ++.++ +..+.+ +++|+++++.+ +.|+.+|.. .....+|+.|++..+. ++.+. ....
T Consensus 80 t~~LdlsnN-kl~~id~~~f~n--------l~nLq~v~l~~-N~Lt~IP~f--~~~sghl~~L~L~~N~-I~sv~se~L~ 146 (873)
T KOG4194|consen 80 TQTLDLSNN-KLSHIDFEFFYN--------LPNLQEVNLNK-NELTRIPRF--GHESGHLEKLDLRHNL-ISSVTSEELS 146 (873)
T ss_pred eeeeecccc-ccccCcHHHHhc--------CCcceeeeecc-chhhhcccc--cccccceeEEeeeccc-cccccHHHHH
Confidence 345777774 56665 333444 67777777776 556666655 3445567777776643 44332 2233
Q ss_pred CCCCcceEEeccccccccccccCCccchhHHHHHHhhcC-CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC
Q 012933 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIG-FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC 185 (453)
Q Consensus 107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 185 (453)
.++.||.||++. +.+..++..-.. -.++++|+++++. +..+..+. + ..+.+|..|.+++.
T Consensus 147 ~l~alrslDLSr---------------N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 147 ALPALRSLDLSR---------------NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRN 207 (873)
T ss_pred hHhhhhhhhhhh---------------chhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccC
Confidence 466677777662 223333221111 1456667766664 43333322 2 23556666666653
Q ss_pred CCccccCchhHHhhcCCCcEEEecc
Q 012933 186 TNMSSAIPANLLRCLNNLQWLEVRN 210 (453)
Q Consensus 186 ~~l~~~~~~~~l~~l~~L~~L~l~~ 210 (453)
.++.+ |...+..++.|+.|++..
T Consensus 208 -rittL-p~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 208 -RITTL-PQRSFKRLPKLESLDLNR 230 (873)
T ss_pred -ccccc-CHHHhhhcchhhhhhccc
Confidence 34333 555566666676666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=2.6e-17 Score=159.36 Aligned_cols=313 Identities=13% Similarity=0.158 Sum_probs=155.5
Q ss_pred CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 103 (453)
+.+..|++|.++++ ++..+-.+... +++||.+.+.+ ++++.--....+.++..|+.|+++.+ +++..|.
T Consensus 52 ~~lqkLEHLs~~HN-~L~~vhGELs~--------Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~ 120 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHN-QLISVHGELSD--------LPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPT 120 (1255)
T ss_pred HHHhhhhhhhhhhh-hhHhhhhhhcc--------chhhHHHhhhc-cccccCCCCchhcccccceeeecchh-hhhhcch
Confidence 45666666666664 45555443333 66666666655 33322222222445666666666663 4666666
Q ss_pred CccCCCCcceEEecccc----------cccc---ccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC
Q 012933 104 GILSTPKLHKVQVTEKE----------EGEL---HHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP 170 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~----------~l~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~ 170 (453)
+..+..++-.|+++.+. ++++ ++++ ++....+|..+..+.+|++|++++++ +...-... +|
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS----~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LP 194 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS----NNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LP 194 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc----cchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cc
Confidence 66666666666666210 0000 0000 23334444444445555555555544 22111111 11
Q ss_pred cCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcce
Q 012933 171 VSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR 250 (453)
Q Consensus 171 ~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 250 (453)
+++.|..|.+++.+..-.-+|.+ +..+.||..++++.+ ++..+|. + .- -.++|++|+|++.. ++.
T Consensus 195 --smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N-~Lp~vPe-----c----ly-~l~~LrrLNLS~N~-ite 259 (1255)
T KOG0444|consen 195 --SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN-NLPIVPE-----C----LY-KLRNLRRLNLSGNK-ITE 259 (1255)
T ss_pred --cchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc-CCCcchH-----H----Hh-hhhhhheeccCcCc-eee
Confidence 23444455555443322222332 444555555555432 2222221 0 00 11556666665532 333
Q ss_pred eccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCC
Q 012933 251 FCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLH 330 (453)
Q Consensus 251 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 330 (453)
+ ......-.+|++|++++ ++++.+|.. +..++.|+.|...+++- .+ ....+.++++.+|+.+...++
T Consensus 260 L---~~~~~~W~~lEtLNlSr-NQLt~LP~a---vcKL~kL~kLy~n~NkL-~F----eGiPSGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 260 L---NMTEGEWENLETLNLSR-NQLTVLPDA---VCKLTKLTKLYANNNKL-TF----EGIPSGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred e---eccHHHHhhhhhhcccc-chhccchHH---HhhhHHHHHHHhccCcc-cc----cCCccchhhhhhhHHHHhhcc-
Confidence 2 12222334566666655 445555554 55666666666655421 10 011234566777777777666
Q ss_pred CcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933 331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
.++-+|++. ..++.|+.|.+++ +.+-.+|+.+.-++.|+.|++...+++.-
T Consensus 327 ~LElVPEgl----cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 327 KLELVPEGL----CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccccCchhh----hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 566666554 5677777777766 66777777777777777777777676654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=3.3e-17 Score=151.13 Aligned_cols=351 Identities=19% Similarity=0.230 Sum_probs=198.8
Q ss_pred hhhhcccchhhcc-cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC
Q 012933 8 FFNIHTHAHTFAY-FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS 86 (453)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 86 (453)
.++++ +.....+ .+.+.+..++.|+.++. ++.++|..++. ..+++.++.++ ..+...+.+ .+.+..
T Consensus 72 vl~~~-~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s--------~~~l~~l~~s~-n~~~el~~~--i~~~~~ 138 (565)
T KOG0472|consen 72 VLNVH-DNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS--------LISLVKLDCSS-NELKELPDS--IGRLLD 138 (565)
T ss_pred EEEec-cchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh--------hhhhhhhhccc-cceeecCch--HHHHhh
Confidence 44555 3333333 34677777777777774 67777776666 77888888777 445555554 566777
Q ss_pred cceEeecCCCCccccccCccCCCCcceEEecccccc------------ccccccCCccchhHHHHHHhhcCCCCccEEEE
Q 012933 87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEG------------ELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQL 154 (453)
Q Consensus 87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 154 (453)
|+.++-.++ ++..+|.+++++.+|..+++.+.+-. .+++.. .+..+.+|..+..+.+|+-|++
T Consensus 139 l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~----~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 139 LEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN----SNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc----hhhhhcCChhhcchhhhHHHHh
Confidence 888877774 57778888888888888777753221 111111 3345567777777888888887
Q ss_pred eeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCC
Q 012933 155 SYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLF 234 (453)
Q Consensus 155 ~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 234 (453)
..++ +..+|. + ..+..|+++.+... . ..+.|.++..+++++..|+++++ +++++|..- . .+
T Consensus 214 ~~Nk-i~~lPe---f--~gcs~L~Elh~g~N-~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~---------c-lL 274 (565)
T KOG0472|consen 214 RRNK-IRFLPE---F--PGCSLLKELHVGEN-Q-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI---------C-LL 274 (565)
T ss_pred hhcc-cccCCC---C--CccHHHHHHHhccc-H-HHhhHHHHhcccccceeeecccc-ccccCchHH---------H-Hh
Confidence 7765 544442 2 22555666655542 1 22345555556666666666653 444443310 0 11
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCC----------------------cee--------------
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDM----------------------ETF-------------- 278 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l----------------------~~~-------------- 278 (453)
.+|++|++++.. ++.+ +...+++ +|+.|.+.|.+-- ++.
T Consensus 275 rsL~rLDlSNN~-is~L---p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 275 RSLERLDLSNND-ISSL---PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred hhhhhhcccCCc-cccC---Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 344444444321 2222 2333334 4444444333210 000
Q ss_pred -ccCC-cccccCCCcccccccccc--------------------------cccccccccc-----------------ccc
Q 012933 279 -ISNS-VVHVTTDNKEPQKLTSEE--------------------------NFLLAHQVQP-----------------LFD 313 (453)
Q Consensus 279 -~~~~-~~~~~l~~L~~L~l~~~~--------------------------~~~~~~~l~~-----------------~~~ 313 (453)
+... +-...+.+.+.|++++.. -.+.+..+.. ...
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 0000 001112233333333211 1011100000 011
Q ss_pred ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-----------------------CC-CCCC
Q 012933 314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-----------------------VP-PSWH 369 (453)
Q Consensus 314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----------------------~~-~~~~ 369 (453)
++..+++|..|+++++ -+.++|.+. +.+..||.|+++. +++..+ +. ++.+
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~----~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLPEEM----GSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcchhh----hhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 2457889999999998 689999887 5777899999988 344333 32 2567
Q ss_pred CCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933 370 LENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM 409 (453)
Q Consensus 370 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 409 (453)
+.+|.+|++.+ +.+..+|+ ..+++++|++|++.+-|-
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCC-CchhhCCh--hhccccceeEEEecCCcc
Confidence 88888999966 78888877 577889999999888773
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=1.8e-15 Score=139.71 Aligned_cols=230 Identities=22% Similarity=0.237 Sum_probs=127.6
Q ss_pred CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 103 (453)
..+..|..|++.+. .+.++|+.++. +..++.++++. .++..++.. .+..+.|..++++++ .+..+|.
T Consensus 65 ~nL~~l~vl~~~~n-~l~~lp~aig~--------l~~l~~l~vs~-n~ls~lp~~--i~s~~~l~~l~~s~n-~~~el~~ 131 (565)
T KOG0472|consen 65 KNLACLTVLNVHDN-KLSQLPAAIGE--------LEALKSLNVSH-NKLSELPEQ--IGSLISLVKLDCSSN-ELKELPD 131 (565)
T ss_pred hcccceeEEEeccc-hhhhCCHHHHH--------HHHHHHhhccc-chHhhccHH--Hhhhhhhhhhhcccc-ceeecCc
Confidence 34555555666653 45555555554 44555555555 344444444 345556666666553 3555555
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD 183 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 183 (453)
+++.+..|..++.. ++.+..++.++..+.++..+.+.++. ++..+... ..+..|++|+..
T Consensus 132 ~i~~~~~l~dl~~~---------------~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 132 SIGRLLDLEDLDAT---------------NNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCN 191 (565)
T ss_pred hHHHHhhhhhhhcc---------------ccccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccc
Confidence 55555555555544 45555666666666666666666554 44433333 224566666554
Q ss_pred CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccC-------------CCCCCCCccceeeeccCCCcce
Q 012933 184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKE-------------HRGPLFPKLYGLRLIDLPKLKR 250 (453)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~L~~L~L~~~~~l~~ 250 (453)
. +-++.+ |.+ ++.+.+|+.|++.. +++..+|..+|+..+.+ ....-++++..|++++. +++.
T Consensus 192 ~-N~L~tl-P~~-lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke 266 (565)
T KOG0472|consen 192 S-NLLETL-PPE-LGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKE 266 (565)
T ss_pred h-hhhhcC-Chh-hcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-cccc
Confidence 3 123333 444 56666666666655 24444444333322211 11112267777788775 3555
Q ss_pred eccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 251 FCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 251 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
+ |..++-+++|..|++++ ..++.+|.. ++++ .|+.|.+.++
T Consensus 267 ~---Pde~clLrsL~rLDlSN-N~is~Lp~s---Lgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 267 V---PDEICLLRSLERLDLSN-NDISSLPYS---LGNL-HLKFLALEGN 307 (565)
T ss_pred C---chHHHHhhhhhhhcccC-CccccCCcc---cccc-eeeehhhcCC
Confidence 4 46788888999999987 556666665 6666 7777777654
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=6e-14 Score=142.12 Aligned_cols=225 Identities=19% Similarity=0.207 Sum_probs=139.2
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
..+|++++++.. +++.+ | +++..+.+|+.++...+ .+..++.-- . .-.+|+.|....+. ++.+
T Consensus 240 p~nl~~~dis~n-~l~~l-p-~wi~~~~nle~l~~n~N-~l~~lp~ri---------~-~~~~L~~l~~~~ne-l~yi-- 302 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNL-P-EWIGACANLEALNANHN-RLVALPLRI---------S-RITSLVSLSAAYNE-LEYI-- 302 (1081)
T ss_pred cccceeeecchh-hhhcc-h-HHHHhcccceEecccch-hHHhhHHHH---------h-hhhhHHHHHhhhhh-hhhC--
Confidence 467888888863 46555 4 67888888888887663 333332100 0 00334444433321 2222
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCC-----------------------cccccCCCcccccccccccccccccccc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNS-----------------------VVHVTTDNKEPQKLTSEENFLLAHQVQP 310 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-----------------------~~~~~l~~L~~L~l~~~~~~~~~~~l~~ 310 (453)
+.....+.+|++|++.. .++..+|... .--..++.|+.|.+.++ .+..
T Consensus 303 -p~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-------~Ltd 373 (1081)
T KOG0618|consen 303 -PPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-------HLTD 373 (1081)
T ss_pred -CCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-------cccc
Confidence 12223345555555544 2233333221 00112334445544443 1111
Q ss_pred -cccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccC
Q 012933 311 -LFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT 389 (453)
Q Consensus 311 -~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 389 (453)
+++-+..+++|+.|+++++ ++..+|...+ .+++.|+.|.+++ ++++.+|..+..++.|++|...+ +.+..+|.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe 447 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYN-RLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE 447 (1081)
T ss_pred cchhhhccccceeeeeeccc-ccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh
Confidence 3455667899999999998 7888888777 8999999999999 89999998888889999998854 77888774
Q ss_pred CCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933 390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED 441 (453)
Q Consensus 390 ~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 441 (453)
...++.|+.+|++ |.++..+...+. ..| |.|++|++++++.
T Consensus 448 ---~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~------p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 ---LAQLPQLKVLDLS-CNNLSEVTLPEA-LPS------PNLKYLDLSGNTR 488 (1081)
T ss_pred ---hhhcCcceEEecc-cchhhhhhhhhh-CCC------cccceeeccCCcc
Confidence 4567999999984 566655533211 112 7899999999884
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.32 E-value=1.7e-14 Score=134.05 Aligned_cols=294 Identities=17% Similarity=0.177 Sum_probs=159.3
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCccc--cccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
.|+.|.+.||.....-+...+...+|+++.|.+.+|.++++ +-....++++|+++++-.|..++. .
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~------------~ 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD------------V 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH------------H
Confidence 46777777766655555555566677777777777776663 112223467777777776654322 1
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
.+.....++++|+++++++|+.+..-.... +. .-+.+++.+...||.....-.-..+-....-+..+++..|..+++.
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchH-Hh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 122234557888888888887665411111 11 1245566676667765532211122233344556666677666654
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
.... ... ....|+.|...+|.++++.+ ......+.++|+.+-+.+|.++++..... ++.
T Consensus 285 ~~~~-------i~~-~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--l~r---------- 343 (483)
T KOG4341|consen 285 DLWL-------IAC-GCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTM--LGR---------- 343 (483)
T ss_pred HHHH-------Hhh-hhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhh--hhc----------
Confidence 3211 011 12667888888887766631 22345567888888888888776655432 111
Q ss_pred ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-----CCCCCCCCC
Q 012933 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-----VPPSWHLEN 372 (453)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~~~l~~ 372 (453)
..+.|+.+++.+|.-..+-..... ..+++.||.+.+++|..+++. .....++..
T Consensus 344 -------------------n~~~Le~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~ 402 (483)
T KOG4341|consen 344 -------------------NCPHLERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG 402 (483)
T ss_pred -------------------CChhhhhhcccccceehhhhHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence 223444444444433222211111 146666666666666655543 223344556
Q ss_pred CCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933 373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI 410 (453)
Q Consensus 373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 410 (453)
|+.+++.+|+.+++-..+ ....+++|+.+++.+|..+
T Consensus 403 l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDV 439 (483)
T ss_pred cceeeecCCCCchHHHHH-HHhhCcccceeeeechhhh
Confidence 666666666666654332 2334566666666666665
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=1.9e-11 Score=127.06 Aligned_cols=257 Identities=18% Similarity=0.143 Sum_probs=161.2
Q ss_pred cceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCC
Q 012933 29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILST 108 (453)
Q Consensus 29 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 108 (453)
-..|+++++ .++.+|..+. ++|+.|.+.+ ++++.++. ..++|++|++++| +++.+|. ..
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~----------~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~---lp 261 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP----------AHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPV---LP 261 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh----------cCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccC---cc
Confidence 456788886 6777776432 3678888887 55666543 2578888888885 6777764 34
Q ss_pred CCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCc
Q 012933 109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM 188 (453)
Q Consensus 109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 188 (453)
++|+.|+++++ .+..++.. +.+|+.|+++++. +..+|. .+++|++|+++++ .+
T Consensus 262 ~sL~~L~Ls~N---------------~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N-~L 314 (788)
T PRK15387 262 PGLLELSIFSN---------------PLTHLPAL---PSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QL 314 (788)
T ss_pred cccceeeccCC---------------chhhhhhc---hhhcCEEECcCCc-cccccc-------cccccceeECCCC-cc
Confidence 67888888743 22333331 3567788887775 554432 2467888888875 45
Q ss_pred cccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEe
Q 012933 189 SSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLT 268 (453)
Q Consensus 189 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~ 268 (453)
+.+ |. ...+|+.|.+++| .+..++. .+++|++|++.++ .++.++. ..++|+.|+
T Consensus 315 ~~L-p~----lp~~L~~L~Ls~N-~L~~LP~-------------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~ 368 (788)
T PRK15387 315 ASL-PA----LPSELCKLWAYNN-QLTSLPT-------------LPSGLQELSVSDN-QLASLPT------LPSELYKLW 368 (788)
T ss_pred ccC-CC----CcccccccccccC-ccccccc-------------cccccceEecCCC-ccCCCCC------CCcccceeh
Confidence 543 21 1245777777664 3444322 2257888888764 4555432 134677777
Q ss_pred eecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCC
Q 012933 269 IQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFAN 348 (453)
Q Consensus 269 l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~ 348 (453)
++++ .+..+|.. ..+|+.|+++++. +. .++. ..++|+.|+++++ .++.+|. .+.+
T Consensus 369 Ls~N-~L~~LP~l------~~~L~~LdLs~N~-Lt-------~LP~--l~s~L~~LdLS~N-~LssIP~-------l~~~ 423 (788)
T PRK15387 369 AYNN-RLTSLPAL------PSGLKELIVSGNR-LT-------SLPV--LPSELKELMVSGN-RLTSLPM-------LPSG 423 (788)
T ss_pred hhcc-ccccCccc------ccccceEEecCCc-cc-------CCCC--cccCCCEEEccCC-cCCCCCc-------chhh
Confidence 7663 45544432 1367888887752 22 0111 2357888888888 5666652 3356
Q ss_pred ccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933 349 LESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 349 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
|+.|++++ +.++.+|..+..+++|+.|++++ +.+..
T Consensus 424 L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~-N~Ls~ 459 (788)
T PRK15387 424 LLSLSVYR-NQLTRLPESLIHLSSETTVNLEG-NPLSE 459 (788)
T ss_pred hhhhhhcc-CcccccChHHhhccCCCeEECCC-CCCCc
Confidence 78888888 67888888888888999999877 44543
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.31 E-value=6.2e-14 Score=130.46 Aligned_cols=91 Identities=25% Similarity=0.312 Sum_probs=38.0
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc--CCCCCCCCCCCEEecccCcccccccCC---Ccc
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL--VPPSWHLENLEALEVSKCHGLINLLTF---STS 393 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~ 393 (453)
++|+.+.+..|..+++.....+. .+.+.|+.+++.+|..+.+- ..-..+++.|+.+.++.|..+++..+. ...
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~--rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLG--RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CceEEEeccccchhhhhhhhhhh--cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34444444444443333322211 34555555555554433321 122334455555555555554443111 011
Q ss_pred cccCCcceEEEcccchhH
Q 012933 394 ESLVNLGRMMIADCKMIE 411 (453)
Q Consensus 394 ~~l~~L~~L~i~~C~~l~ 411 (453)
.+...|+.+.+.+||.+.
T Consensus 398 c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred ccccccceeeecCCCCch
Confidence 223444555555555543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-12 Score=133.08 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=65.5
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE 314 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 314 (453)
+.|+.|.+.+.. +++- ....+.++.+||.|++++ +.+..+|... +.+++.|++|.+++++=-.+ .+.
T Consensus 359 ~~Lq~LylanN~-Ltd~--c~p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSGNkL~~L-------p~t 425 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDS--CFPVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSGNKLTTL-------PDT 425 (1081)
T ss_pred HHHHHHHHhcCc-cccc--chhhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhcccchhhhh-------hHH
Confidence 566666666543 3321 114566777888888876 4456666554 55666666666666521110 022
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCC-CCCCEEecccCc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHL-ENLEALEVSKCH 382 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~ 382 (453)
+..++.|++|...++ .+..+| +. ..++.|+.++++. +.++.+.....-- ++|++|++++..
T Consensus 426 va~~~~L~tL~ahsN-~l~~fP-e~----~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSN-QLLSFP-EL----AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhhhhHHHhhcCC-ceeech-hh----hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 334455555555444 344444 22 4556666666655 4444322111001 566666665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=3.7e-10 Score=117.63 Aligned_cols=256 Identities=16% Similarity=0.118 Sum_probs=171.9
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHH
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC 139 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 139 (453)
+-..|+++++ .++.+|.. . .++|+.|++.++ +++.+|. ..++|++|+++++ + +..+
T Consensus 202 ~~~~LdLs~~-~LtsLP~~--l--~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N-~--------------LtsL 257 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDC--L--PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-Q--------------LTSL 257 (788)
T ss_pred CCcEEEcCCC-CCCcCCcc--h--hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCC-c--------------cCcc
Confidence 3556777774 67766654 2 257899999885 5777774 3678999999853 2 2222
Q ss_pred HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhc
Q 012933 140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLH 219 (453)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 219 (453)
+. ..++|++|+++++. +..++. .+.+|+.|+++++ +++.+ |. ..++|+.|+++++ .+..++.
T Consensus 258 P~---lp~sL~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~L-P~----~p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 258 PV---LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTSL-PV----LPPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred cC---cccccceeeccCCc-hhhhhh-------chhhcCEEECcCC-ccccc-cc----cccccceeECCCC-ccccCCC
Confidence 22 14678888888875 554332 2467889999886 45544 32 2478999999885 5555432
Q ss_pred ccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
.++.|+.|.+.++ .++.++. -.++|+.|+++++ +++.+|.. ..+|+.|+++++
T Consensus 320 -------------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~N-~Ls~LP~l------p~~L~~L~Ls~N 372 (788)
T PRK15387 320 -------------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSDN-QLASLPTL------PSELYKLWAYNN 372 (788)
T ss_pred -------------CcccccccccccC-ccccccc------cccccceEecCCC-ccCCCCCC------Ccccceehhhcc
Confidence 2256888888765 3444421 1247999999884 56665542 127788888765
Q ss_pred ccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecc
Q 012933 300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVS 379 (453)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 379 (453)
. +. .++. ..++|+.|+++++ .++.++. ..++|+.|++++ +.++.+|.. ..+|+.|+++
T Consensus 373 ~-L~-------~LP~--l~~~L~~LdLs~N-~Lt~LP~-------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 373 R-LT-------SLPA--LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVY 430 (788)
T ss_pred c-cc-------cCcc--cccccceEEecCC-cccCCCC-------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhc
Confidence 2 22 1122 2358999999998 5666652 346899999999 568888864 3578889997
Q ss_pred cCcccccccCCCcccccCCcceEEEcccch
Q 012933 380 KCHGLINLLTFSTSESLVNLGRMMIADCKM 409 (453)
Q Consensus 380 ~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 409 (453)
+ ++++.+|.. ...+++|+.|++++++-
T Consensus 431 ~-NqLt~LP~s--l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 431 R-NQLTRLPES--LIHLSSETTVNLEGNPL 457 (788)
T ss_pred c-CcccccChH--HhhccCCCeEECCCCCC
Confidence 7 778888763 55789999999998873
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=5.4e-11 Score=126.24 Aligned_cols=293 Identities=20% Similarity=0.271 Sum_probs=148.6
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
|..++.|+.|+|++|..+.++|..++. +-+||+|++++ ..+..+|.+ ...+..|.+|++.....+..+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~-t~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSD-TGISHLPSG--LGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccC-CCccccchH--HHHHHhhheecccccccccccc
Confidence 445666677777766666666666665 66677777766 445555555 5566667777766666666554
Q ss_pred cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc----
Q 012933 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA---- 178 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~---- 178 (453)
.....+++||+|.+..-. .........++..+..|+.+.+..... . +-.. + ...++|.
T Consensus 636 ~i~~~L~~Lr~L~l~~s~------------~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~--l--~~~~~L~~~~~ 697 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA------------LSNDKLLLKELENLEHLENLSITISSV-L-LLED--L--LGMTRLRSLLQ 697 (889)
T ss_pred chhhhcccccEEEeeccc------------cccchhhHHhhhcccchhhheeecchh-H-hHhh--h--hhhHHHHHHhH
Confidence 444446677777666311 111122223334444444444433221 0 0000 0 1122222
Q ss_pred EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI 258 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 258 (453)
.+.+.+|...+ . ...+..+.+|+.|.+.+|...+......... .....|+++..+...+|...+.. .+.
T Consensus 698 ~l~~~~~~~~~-~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~----~~~~~f~~l~~~~~~~~~~~r~l----~~~ 766 (889)
T KOG4658|consen 698 SLSIEGCSKRT-L--ISSLGSLGNLEELSILDCGISEIVIEWEESL----IVLLCFPNLSKVSILNCHMLRDL----TWL 766 (889)
T ss_pred hhhhcccccce-e--ecccccccCcceEEEEcCCCchhhccccccc----chhhhHHHHHHHHhhcccccccc----chh
Confidence 22223322221 1 1236677778888887776654432110000 00002466666666677666653 455
Q ss_pred cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE-eecCCCCcceecc
Q 012933 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL-ELSGLHKVQHLWK 337 (453)
Q Consensus 259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L-~l~~~~~l~~l~~ 337 (453)
...|+|+.|.+..|..+++.... ...+..++.+ +-.|.+++.+ .+.+.+.+.++..
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~---~k~~~~l~~~--------------------i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPK---LKALLELKEL--------------------ILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred hccCcccEEEEecccccccCCCH---HHHhhhcccE--------------------EecccccccceeeecCCCCceeEe
Confidence 66778888888777766554322 1111111110 1134455555 4555555555544
Q ss_pred cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC-cccccccC
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC-HGLINLLT 389 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-~~l~~l~~ 389 (453)
... ..+.|+.+.+..|+++..+ |.+.++.+.+| ..+...|.
T Consensus 824 ~~l----~~~~l~~~~ve~~p~l~~~-------P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 824 LPL----SFLKLEELIVEECPKLGKL-------PLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred ccc----CccchhheehhcCcccccC-------ccccccceeccccceeecCC
Confidence 432 3344777777777665544 45555666665 55554443
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.4e-10 Score=123.19 Aligned_cols=324 Identities=18% Similarity=0.192 Sum_probs=183.8
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeecccccc-ccccccccccccCCCcceEeecCCCCccccccC
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT-LTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 104 (453)
....++..+.+. .+..++.... ++.|++|-+.+... +... ...+...+|.|+.|++++|..+..+|..
T Consensus 522 ~~~~rr~s~~~~-~~~~~~~~~~---------~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 522 WNSVRRMSLMNN-KIEHIAGSSE---------NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred hhheeEEEEecc-chhhccCCCC---------CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChH
Confidence 344566666653 4555554322 56788888877332 2222 1223567899999999999999999999
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD 184 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 184 (453)
++.+.+||+|++. .+.+..+|..+.+++.|.+|++..+..+..++... ..+++|++|.+..
T Consensus 591 I~~Li~LryL~L~---------------~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 591 IGELVHLRYLDLS---------------DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPR 651 (889)
T ss_pred Hhhhhhhhccccc---------------CCCccccchHHHHHHhhheeccccccccccccchh----hhcccccEEEeec
Confidence 9999999999999 55677889999999999999999888666654433 4589999999987
Q ss_pred CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccc----eeeeccCCCcceeccCCCcccC
Q 012933 185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY----GLRLIDLPKLKRFCNFTGNIIE 260 (453)
Q Consensus 185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~~ 260 (453)
.....+......+..+.+|+.+.+..... ..+....+ . ++|. .+.+.++..-+ .......
T Consensus 652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~----------~-~~L~~~~~~l~~~~~~~~~----~~~~~~~ 715 (889)
T KOG4658|consen 652 SALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLG----------M-TRLRSLLQSLSIEGCSKRT----LISSLGS 715 (889)
T ss_pred cccccchhhHHhhhcccchhhheeecchh-HhHhhhhh----------h-HHHHHHhHhhhhcccccce----eeccccc
Confidence 64222222333456666667776654433 11111100 1 2333 22222222222 2356677
Q ss_pred CCCccEEeeecCCCCceec--cCCccccc-CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933 261 LPELQHLTIQNCPDMETFI--SNSVVHVT-TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK 337 (453)
Q Consensus 261 l~~L~~L~l~~c~~l~~~~--~~~~~~~~-l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 337 (453)
+++|+.|.|.+|....... ........ ++++..+.+.+|.... .....-..|+|+.|++..|+.++++..
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-------~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-------DLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-------ccchhhccCcccEEEEecccccccCCC
Confidence 8899999998887643211 11000111 3344555555553322 001112457899999988877766543
Q ss_pred cCC--c----ccccCCCccce-eeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEccc-ch
Q 012933 338 END--E----SNKAFANLESL-EISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC-KM 409 (453)
Q Consensus 338 ~~~--~----~~~~l~~L~~L-~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C-~~ 409 (453)
..- . ....+.+++.+ .+.+-.++..+-..-..++.|+.+.+..|+++..+ |.+.++.+.+| ++
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~ 859 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEK 859 (889)
T ss_pred HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC---------ccccccceeccccc
Confidence 210 0 00223333333 23332222222111112234666666666665544 55666677776 44
Q ss_pred hH
Q 012933 410 IE 411 (453)
Q Consensus 410 l~ 411 (453)
+.
T Consensus 860 ~~ 861 (889)
T KOG4658|consen 860 LK 861 (889)
T ss_pred ee
Confidence 43
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=4.3e-10 Score=117.66 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=35.1
Q ss_pred ccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccC
Q 012933 28 SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILS 107 (453)
Q Consensus 28 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 107 (453)
+...|++++. .++.+|..+. ++++.|++++ ++++.++.. .+++|+.|++++| +++.+|..+
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip----------~~L~~L~Ls~-N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l-- 239 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP----------EQITTLILDN-NELKSLPEN----LQGNIKTLYANSN-QLTSIPATL-- 239 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc----------cCCcEEEecC-CCCCcCChh----hccCCCEEECCCC-ccccCChhh--
Confidence 3455666654 4555554321 2456666655 345544433 1245666666654 355554322
Q ss_pred CCCcceEEecc
Q 012933 108 TPKLHKVQVTE 118 (453)
Q Consensus 108 ~~~L~~L~l~~ 118 (453)
.++|+.|++++
T Consensus 240 ~~~L~~L~Ls~ 250 (754)
T PRK15370 240 PDTIQEMELSI 250 (754)
T ss_pred hccccEEECcC
Confidence 23455555553
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.87 E-value=5.3e-09 Score=109.53 Aligned_cols=246 Identities=13% Similarity=0.144 Sum_probs=118.3
Q ss_pred CcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (453)
Q Consensus 86 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (453)
+...|++.+. +++.+|..+ .++|+.|+++++ .+..++..+ +++|++|+++++. +..++.
T Consensus 179 ~~~~L~L~~~-~LtsLP~~I--p~~L~~L~Ls~N---------------~LtsLP~~l--~~nL~~L~Ls~N~-LtsLP~ 237 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACI--PEQITTLILDNN---------------ELKSLPENL--QGNIKTLYANSNQ-LTSIPA 237 (754)
T ss_pred CceEEEeCCC-CcCcCCccc--ccCCcEEEecCC---------------CCCcCChhh--ccCCCEEECCCCc-cccCCh
Confidence 3455666553 455555432 235666666532 122222222 2456666666554 444333
Q ss_pred CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (453)
Q Consensus 166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 245 (453)
. ..++|+.|++++|. ++.+ |.. + .++|+.|+++++ .+..++. ..+++|++|++.++
T Consensus 238 ~------l~~~L~~L~Ls~N~-L~~L-P~~-l--~s~L~~L~Ls~N-~L~~LP~------------~l~~sL~~L~Ls~N 293 (754)
T PRK15370 238 T------LPDTIQEMELSINR-ITEL-PER-L--PSALQSLDLFHN-KISCLPE------------NLPEELRYLSVYDN 293 (754)
T ss_pred h------hhccccEEECcCCc-cCcC-Chh-H--hCCCCEEECcCC-ccCcccc------------ccCCCCcEEECCCC
Confidence 2 13456666666653 3332 332 1 245666666542 4443321 12245666666654
Q ss_pred CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933 246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE 325 (453)
Q Consensus 246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 325 (453)
+++.++ ..+ .++|+.|+++++ .+..+|.. +. ++|+.|++.+|.--. ++. ...++|+.|+
T Consensus 294 -~Lt~LP---~~l--p~sL~~L~Ls~N-~Lt~LP~~---l~--~sL~~L~Ls~N~Lt~--------LP~-~l~~sL~~L~ 352 (754)
T PRK15370 294 -SIRTLP---AHL--PSGITHLNVQSN-SLTALPET---LP--PGLKTLEAGENALTS--------LPA-SLPPELQVLD 352 (754)
T ss_pred -ccccCc---ccc--hhhHHHHHhcCC-ccccCCcc---cc--ccceeccccCCcccc--------CCh-hhcCcccEEE
Confidence 344331 111 135666666653 23333322 11 256666666552111 011 1125677777
Q ss_pred ecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCC--CcccccCCcceEE
Q 012933 326 LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF--STSESLVNLGRMM 403 (453)
Q Consensus 326 l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~ 403 (453)
+++| .++.++.. -.++|+.|++++| .++.+|..+. .+|+.|++++ +++..+|.. .....++.+.+++
T Consensus 353 Ls~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 353 VSKN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred CCCC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEE
Confidence 7766 45555432 2256777777773 4666665432 3566666665 456555431 0112235566666
Q ss_pred Ecccc
Q 012933 404 IADCK 408 (453)
Q Consensus 404 i~~C~ 408 (453)
+.+-+
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 66555
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-09 Score=90.54 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=67.8
Q ss_pred ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF 101 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 101 (453)
.+-.+.++++|.++++ ++..+|..+.. +.+|++|++.+ +++++++.+ ...+|+|+.|+++- .++..+
T Consensus 28 gLf~~s~ITrLtLSHN-Kl~~vppnia~--------l~nlevln~~n-nqie~lp~~--issl~klr~lnvgm-nrl~~l 94 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-KLTVVPPNIAE--------LKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGM-NRLNIL 94 (264)
T ss_pred cccchhhhhhhhcccC-ceeecCCcHHH--------hhhhhhhhccc-chhhhcChh--hhhchhhhheecch-hhhhcC
Confidence 3344677888999995 78888887766 88999999987 668888777 67889999999876 468888
Q ss_pred ccCccCCCCcceEEecc
Q 012933 102 SHGILSTPKLHKVQVTE 118 (453)
Q Consensus 102 ~~~~~~~~~L~~L~l~~ 118 (453)
|.+++++|.|+.|++..
T Consensus 95 prgfgs~p~levldlty 111 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTY 111 (264)
T ss_pred ccccCCCchhhhhhccc
Confidence 89999999998888884
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=6.8e-09 Score=99.50 Aligned_cols=39 Identities=26% Similarity=0.065 Sum_probs=23.0
Q ss_pred cCCCcCEEeecCCCCcceecccCCc-ccccC-CCccceeecc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDE-SNKAF-ANLESLEISE 356 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~-~~~~l-~~L~~L~l~~ 356 (453)
.+++|++++++++ .+++.+...++ +.... +.|++++|.+
T Consensus 276 ~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 276 EKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred cCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 4578888888887 45543222111 11334 6788887766
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=4.3e-09 Score=100.90 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=6.5
Q ss_pred CCCcCEEeecCC
Q 012933 318 FPRLRWLELSGL 329 (453)
Q Consensus 318 l~~L~~L~l~~~ 329 (453)
+++|++|++++|
T Consensus 220 ~~~L~~L~ls~n 231 (319)
T cd00116 220 LKSLEVLNLGDN 231 (319)
T ss_pred cCCCCEEecCCC
Confidence 445555555555
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.7e-08 Score=95.19 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=140.1
Q ss_pred CcccccceEEeccccchhhhhcccccccccccccccccceeecccccccccccc-ccccccCCCcceEeecCCCCccccc
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCL-ENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
+++..|+...|.+| .+...+.+ +....|++++.|+++. +-+..|.. ......+|+|+.|+++.+. +..+.
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~------~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIE------EYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hhHHhhhheeecCc-cccccchh------hhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence 55788999999987 56665543 1455699999999998 33444432 2456789999999999964 55332
Q ss_pred cC--ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933 103 HG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL 180 (453)
Q Consensus 103 ~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L 180 (453)
.. ...++.|+.|.+++| .-...++-..+..+|+|+.|.+..+..+.... .+...+..|++|
T Consensus 189 ~s~~~~~l~~lK~L~l~~C-------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~L 251 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSC-------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQEL 251 (505)
T ss_pred cccchhhhhhhheEEeccC-------------CCCHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhc
Confidence 22 224788999999987 33456666677779999999998875222111 222457889999
Q ss_pred EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933 181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE 260 (453)
Q Consensus 181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 260 (453)
++++.+.+. ..-......++.|..|.++.+ .+.++...+. ...-....|++|++|.+...+ +.+ |..-..+..
T Consensus 252 dLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~---~s~~kt~~f~kL~~L~i~~N~-I~~-w~sl~~l~~ 324 (505)
T KOG3207|consen 252 DLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIASIAEPDV---ESLDKTHTFPKLEYLNISENN-IRD-WRSLNHLRT 324 (505)
T ss_pred cccCCcccc-cccccccccccchhhhhcccc-CcchhcCCCc---cchhhhcccccceeeecccCc-ccc-ccccchhhc
Confidence 999976443 333345778889998888875 3444321110 000111246899999887654 333 333356667
Q ss_pred CCCccEEeeecC
Q 012933 261 LPELQHLTIQNC 272 (453)
Q Consensus 261 l~~L~~L~l~~c 272 (453)
+++|+.|.+...
T Consensus 325 l~nlk~l~~~~n 336 (505)
T KOG3207|consen 325 LENLKHLRITLN 336 (505)
T ss_pred cchhhhhhcccc
Confidence 778888876553
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.3e-08 Score=92.55 Aligned_cols=215 Identities=14% Similarity=0.145 Sum_probs=137.3
Q ss_pred HHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCcccc-CchhHHhhcCCCcEEEeccCccchhh
Q 012933 139 CYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSA-IPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 139 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~-~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
+-..-..+.+|+...+.+++ +....... . ...||+++.|+++..- +... .-..+...+++|+.|+++.+.-....
T Consensus 113 i~akQsn~kkL~~IsLdn~~-V~~~~~~~-~-~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYR-VEDAGIEE-Y-SKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHhhhHHhhhheeecCcc-ccccchhh-h-hhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 33344567788888888876 44333211 1 1569999999999742 1111 13346788999999999885322211
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
.. .....+++|++|.+..|.- .. .........+|+|+.|++.+...+...... ..-+..|++|+++
T Consensus 189 -~s--------~~~~~l~~lK~L~l~~CGl-s~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 189 -SS--------NTTLLLSHLKQLVLNSCGL-SW-KDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLS 254 (505)
T ss_pred -cc--------cchhhhhhhheEEeccCCC-CH-HHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhcccc
Confidence 10 1111458999999999962 21 112234567999999999987543332222 3335589999999
Q ss_pred ccccccccccccccccccccCCCcCEEeecCCCCcceeccc---CCcccccCCCccceeeccCCCccccCC--CCCCCCC
Q 012933 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE---NDESNKAFANLESLEISECSKLQKLVP--PSWHLEN 372 (453)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~ 372 (453)
++..+.++. +...+.||.|+.|.+++| .+.++..- .......+++|++|.+.. +.+.+++. .+..+++
T Consensus 255 ~N~li~~~~-----~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 255 NNNLIDFDQ-----GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLEN 327 (505)
T ss_pred CCccccccc-----ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccch
Confidence 986655221 234568999999999988 55554321 111236899999999999 66655554 4566788
Q ss_pred CCEEec
Q 012933 373 LEALEV 378 (453)
Q Consensus 373 L~~L~l 378 (453)
|++|.+
T Consensus 328 lk~l~~ 333 (505)
T KOG3207|consen 328 LKHLRI 333 (505)
T ss_pred hhhhhc
Confidence 888876
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.44 E-value=2.4e-08 Score=93.01 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=70.2
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTS 393 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~ 393 (453)
+..+|+|+.|+++++ +++.+-...| ....++++|.+.. ++++.+... +..+..|++|++.+ ++++.+.. +.+
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aF---e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~-~aF 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAF---EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP-GAF 342 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhh---cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEec-ccc
Confidence 347899999999998 7999988888 7899999999999 788887764 67899999999987 78888755 356
Q ss_pred cccCCcceEEEc
Q 012933 394 ESLVNLGRMMIA 405 (453)
Q Consensus 394 ~~l~~L~~L~i~ 405 (453)
..+.+|.+|.+-
T Consensus 343 ~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 343 QTLFSLSTLNLL 354 (498)
T ss_pred cccceeeeeehc
Confidence 677888888875
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.39 E-value=9.2e-09 Score=85.11 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=110.3
Q ss_pred ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc--
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK-- 99 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-- 99 (453)
..+.+.+|+.|++.++ +++++|..+.. +++|+.|++. ++.+.-.+.+ .+.||.|+.|+++++. +.
T Consensus 51 nia~l~nlevln~~nn-qie~lp~~iss--------l~klr~lnvg-mnrl~~lprg--fgs~p~levldltynn-l~e~ 117 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNN-QIEELPTSISS--------LPKLRILNVG-MNRLNILPRG--FGSFPALEVLDLTYNN-LNEN 117 (264)
T ss_pred cHHHhhhhhhhhcccc-hhhhcChhhhh--------chhhhheecc-hhhhhcCccc--cCCCchhhhhhccccc-cccc
Confidence 3677999999999985 89999986555 9999999986 5777777777 7889999999999965 43
Q ss_pred ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~ 179 (453)
++|..+..+..|+.|.++ .+.+.-+|..+..+++|+.|.+.+++ +-.+|... +.+..|++
T Consensus 118 ~lpgnff~m~tlralyl~---------------dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkei----g~lt~lre 177 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLG---------------DNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEI----GDLTRLRE 177 (264)
T ss_pred cCCcchhHHHHHHHHHhc---------------CCCcccCChhhhhhcceeEEeeccCc-hhhCcHHH----HHHHHHHH
Confidence 788888888999999998 45566778888889999999999887 55556555 56889999
Q ss_pred EEecCCCCccccC
Q 012933 180 LVVDDCTNMSSAI 192 (453)
Q Consensus 180 L~l~~c~~l~~~~ 192 (453)
|.|.|. .++-++
T Consensus 178 lhiqgn-rl~vlp 189 (264)
T KOG0617|consen 178 LHIQGN-RLTVLP 189 (264)
T ss_pred Hhcccc-eeeecC
Confidence 999984 455443
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-08 Score=91.68 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC
Q 012933 288 TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS 358 (453)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~ 358 (453)
+++|.+|+++++..+.. ..+.++..|+.|++|.++.|..+ +.+.+-.....|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCc-----hHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEecccc
Confidence 34555555555433330 12234457778888888777533 22222122667778888887764
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.28 E-value=1.9e-07 Score=87.11 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=47.6
Q ss_pred ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933 258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK 337 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 337 (453)
+..+|+|++|++++ ++++.+...+ +.....+++|.+..++--.+-+. -+..+..|+.|+++++ .++.+..
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~------~f~~ls~L~tL~L~~N-~it~~~~ 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGA--FEGAAELQELYLTRNKLEFVSSG------MFQGLSGLKTLSLYDN-QITTVAP 339 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhh--hcchhhhhhhhcCcchHHHHHHH------hhhccccceeeeecCC-eeEEEec
Confidence 55667777777766 3445444444 55556666666665422111000 0123456666777776 5666666
Q ss_pred cCCcccccCCCccceeecc
Q 012933 338 ENDESNKAFANLESLEISE 356 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~ 356 (453)
+.| ..+.+|.+|.+-.
T Consensus 340 ~aF---~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 GAF---QTLFSLSTLNLLS 355 (498)
T ss_pred ccc---cccceeeeeehcc
Confidence 666 5666666666554
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=7e-06 Score=79.13 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=34.1
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
++++++|++++| .++.+ | . -.++|+.|.+++|..++.++. ..+++|++|.+.+|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sL-P-~---LP~sLtsL~Lsnc~nLtsLP~------------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL-P-V---LPNELTEITIENCNNLTTLPG------------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCccc-C-C---CCCCCcEEEccCCCCcccCCc------------hhhhhhhheEccCccccccc
Confidence 566777777776 45444 2 1 123577777777666655432 12256677777666655543
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=4.3e-06 Score=58.60 Aligned_cols=58 Identities=31% Similarity=0.447 Sum_probs=41.8
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKC 381 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 381 (453)
|+|++|++++| +++.++.+.| ..+++|++|++++ +.++.++. .+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT---TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 56777777777 6777777777 6777777777775 56666665 4567777777777664
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=3.4e-07 Score=92.94 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCEEecccCcccccccCCCcccccCCcceEEEcccchhHHH
Q 012933 373 LEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQI 413 (453)
Q Consensus 373 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~ 413 (453)
++.|.+..|...++-........+.+++.+++.+|+.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 67777777666655433211111556677777777766444
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.9e-07 Score=82.90 Aligned_cols=165 Identities=21% Similarity=0.161 Sum_probs=87.7
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccc--cCccCCCCcceEEeccccccccccccCCccchh
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS--HGILSTPKLHKVQVTEKEEGELHHWEGNKLNST 135 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 135 (453)
|.+|+.|.+++.. +.+-.. ....+=.+|++|+++.|.+++... .-+.++..|..|+++.|--. ...
T Consensus 209 C~kLk~lSlEg~~-LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~----------~~~ 276 (419)
T KOG2120|consen 209 CSKLKNLSLEGLR-LDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF----------TEK 276 (419)
T ss_pred HHhhhhccccccc-cCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc----------chh
Confidence 6667777666622 222111 113344667777777777666322 22345666777777654210 111
Q ss_pred HHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933 136 IQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (453)
Q Consensus 136 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (453)
+..+...+ -++|..|+++++...-...... .-...+|+|.+|++++|..++.. -..++.+++.|++|.++.|-.+.
T Consensus 277 Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 277 VTVAVAHI--SETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred hhHHHhhh--chhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCC
Confidence 22222222 1556677777765222111111 11156788888888888777664 33346677888888888875543
Q ss_pred hhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK 247 (453)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 247 (453)
.--.++ .... |+|.+|+..+|-.
T Consensus 353 p~~~~~--------l~s~-psl~yLdv~g~vs 375 (419)
T KOG2120|consen 353 PETLLE--------LNSK-PSLVYLDVFGCVS 375 (419)
T ss_pred hHHeee--------eccC-cceEEEEeccccC
Confidence 221111 0112 7888888887743
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.99 E-value=6.9e-07 Score=90.74 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC-CCccccC--chhHHhhcCCCcEEEeccCccchhhhcccc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC-TNMSSAI--PANLLRCLNNLQWLEVRNCDSIEEVLHLEE 222 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c-~~l~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 222 (453)
++.|+.+.+.++..+.+.+... +. ..+++|++|++++| ....... .......+++|+.++++.|..+++..-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--- 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--- 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH---
Confidence 5677777777766555422111 11 34677777777763 2211111 122345566777777777665554321
Q ss_pred cccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCce
Q 012933 223 QNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMET 277 (453)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 277 (453)
..+ ...+ ++|++|.+.+|..+++. ........+++|++|++++|..+++
T Consensus 262 -~~l---~~~c-~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 262 -SAL---ASRC-PNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred -HHH---HhhC-CCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchH
Confidence 100 0112 67777777777665442 1112345577777777777776643
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=3.9e-06 Score=75.87 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=82.6
Q ss_pred Ccccccccccccccccccccccccc-cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCC
Q 012933 290 NKEPQKLTSEENFLLAHQVQPLFDE-KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSW 368 (453)
Q Consensus 290 ~L~~L~l~~~~~~~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 368 (453)
.|++++++.+..- .+++ ....|.++.|+++.+ .+..+.. + ..+++|+.|++++ +.++.+..+-.
T Consensus 285 ~LtelDLS~N~I~--------~iDESvKL~Pkir~L~lS~N-~i~~v~n--L---a~L~~L~~LDLS~-N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 285 ELTELDLSGNLIT--------QIDESVKLAPKLRRLILSQN-RIRTVQN--L---AELPQLQLLDLSG-NLLAECVGWHL 349 (490)
T ss_pred hhhhccccccchh--------hhhhhhhhccceeEEecccc-ceeeehh--h---hhcccceEeeccc-chhHhhhhhHh
Confidence 5666666654221 2222 234578888888777 4444432 2 6778888888887 66666665555
Q ss_pred CCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED 441 (453)
Q Consensus 369 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 441 (453)
.+-|.++|.+++ +.++++. ..+.+=+|..||+++.. |+ +-++...++.+|+|+++.+.++|-
T Consensus 350 KLGNIKtL~La~-N~iE~LS---GL~KLYSLvnLDl~~N~-Ie------~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 KLGNIKTLKLAQ-NKIETLS---GLRKLYSLVNLDLSSNQ-IE------ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhcCEeeeehhh-hhHhhhh---hhHhhhhheeccccccc-hh------hHHHhcccccccHHHHHhhcCCCc
Confidence 667778888876 6677663 34556677777776643 21 224567899999999999999885
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.96 E-value=2.7e-06 Score=72.94 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=29.9
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--C
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF--S 391 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~--~ 391 (453)
..+++|++|+++++ .++++..... .++|+|++|.+++ +++.++.. ....+++|+.|.+.+.| +.+.+.. .
T Consensus 61 ~~L~~L~~L~L~~N-~I~~i~~~l~---~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~ 134 (175)
T PF14580_consen 61 PGLPRLKTLDLSNN-RISSISEGLD---KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLF 134 (175)
T ss_dssp ---TT--EEE--SS----S-CHHHH---HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHH
T ss_pred cChhhhhhcccCCC-CCCccccchH---HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHH
Confidence 34566666666666 5555543211 3466666666666 55555433 23456666666666533 2222111 1
Q ss_pred cccccCCcceEEEcccc
Q 012933 392 TSESLVNLGRMMIADCK 408 (453)
Q Consensus 392 ~~~~l~~L~~L~i~~C~ 408 (453)
+...+|+|+.||-....
T Consensus 135 vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 135 VIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT-SEETTEETT
T ss_pred HHHHcChhheeCCEEcc
Confidence 23355666666654433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=5.6e-06 Score=71.05 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=50.8
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCC-CCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
.+.+|+.|++++| .++++. .+ ..++.|+.|++++ +.++++...+ ..+|+|++|.+++ +++.++..-.....
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~--~l---~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLE--GL---PGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSS 111 (175)
T ss_dssp T-TT--EEE-TTS---S--T--T-------TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred hhcCCCEEECCCC-CCcccc--Cc---cChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence 4679999999998 677765 34 6899999999999 8898886544 3689999999977 78888755445567
Q ss_pred cCCcceEEEcccchhHHHHhhccCCcc--CCCceeccccchhhhh
Q 012933 396 LVNLGRMMIADCKMIEQIIQLQVGEEA--KDCNVFKELSCETMSK 438 (453)
Q Consensus 396 l~~L~~L~i~~C~~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~ 438 (453)
+++|+.|++.+.|--++ .++ .-+..+|+|+.|+-..
T Consensus 112 l~~L~~L~L~~NPv~~~-------~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEK-------KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TT-GGGGS-------TTHHHHHHHH-TT-SEETTEE
T ss_pred CCCcceeeccCCcccch-------hhHHHHHHHHcChhheeCCEE
Confidence 89999999999884311 111 2234678887776544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=2.8e-05 Score=54.43 Aligned_cols=59 Identities=32% Similarity=0.437 Sum_probs=51.0
Q ss_pred CCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 347 ANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 347 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
|+|++|++++| .++.+|. .+..+++|++|++++ ++++.++.. .+..+++|++|++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 68999999995 8999986 578899999999985 789998774 56789999999999875
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.4e-05 Score=83.42 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=91.9
Q ss_pred ccccceEEeccccch-hhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC
Q 012933 26 PSSLVNLNVSRCDKI-EEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l-~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 104 (453)
-.+|++|+++|-..+ +.+|..++. .||+|+.|.+.+- .+..-........||+|..|||+++ +++.+ .+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~-------~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGT-------MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhh-------hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc-HH
Confidence 467888888885443 345555443 4888888888872 2322223344567888888888886 46666 67
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCC-C-CcCccCCCcEEEe
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQA-L-PVSFFNNLARLVV 182 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-l-~~~~l~~L~~L~l 182 (453)
++.+.+|+.|.+.+.+- ....-...+..+++|+.|+++.-.....--.... + ....+|+||.|+.
T Consensus 191 IS~LknLq~L~mrnLe~-------------e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEF-------------ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred HhccccHHHHhccCCCC-------------CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 78888888888885321 1112223455678888888887654332100000 0 1133788888888
Q ss_pred cCCCCccccCchhHHhhcCCCcEEE
Q 012933 183 DDCTNMSSAIPANLLRCLNNLQWLE 207 (453)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~ 207 (453)
++.. +....-...+..-++|+.+.
T Consensus 258 SgTd-i~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 258 SGTD-INEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CCcc-hhHHHHHHHHHhCccHhhhh
Confidence 8753 33222333334444444443
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00014 Score=70.23 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=106.3
Q ss_pred HhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCc
Q 012933 197 LRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDME 276 (453)
Q Consensus 197 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 276 (453)
+..+.+++.|++++| .++.++. .+++|++|.+.+|..++.++ ..+ .++|+.|.+++|.++.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCC---chh--hhhhhheEccCccccc
Confidence 445789999999998 6776642 33689999999999987763 222 3599999999998887
Q ss_pred eeccCCcccccCCCcccccccccccccccccccccccccccC-CCcCEEeecCCCCcceecccCCcccccCCCccceeec
Q 012933 277 TFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSF-PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS 355 (453)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~ 355 (453)
.+|. +|+.|++..... . .+..+ ++|+.|.+.+........... .-.++|+.|.+.
T Consensus 109 sLP~---------sLe~L~L~~n~~-~----------~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is 164 (426)
T PRK15386 109 GLPE---------SVRSLEIKGSAT-D----------SIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLT 164 (426)
T ss_pred cccc---------ccceEEeCCCCC-c----------ccccCcchHhheecccccccccccccc----ccCCcccEEEec
Confidence 6553 577777754311 1 11223 578999886543221111111 234789999999
Q ss_pred cCCCccccCCCCCCCCCCCEEecccCccc-ccccCCCcccccCCcceEEEcccchhH
Q 012933 356 ECSKLQKLVPPSWHLENLEALEVSKCHGL-INLLTFSTSESLVNLGRMMIADCKMIE 411 (453)
Q Consensus 356 ~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~i~~C~~l~ 411 (453)
+|..+ .+|..+ -.+|+.|.+..+... ..++...++ +++ .|++.+|.++.
T Consensus 165 ~c~~i-~LP~~L--P~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 165 GCSNI-ILPEKL--PESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLLS 214 (426)
T ss_pred CCCcc-cCcccc--cccCcEEEecccccccccCcccccc---ccc-EechhhhcccC
Confidence 98855 344433 268999998663211 122332344 455 88888887663
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=3.4e-05 Score=80.54 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (453)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (453)
.+|++|++++......-|... +. ..+|.|++|.+.|-. +..........+++||..||++++ .+..+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G------- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNLSG------- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCcHH-------
Confidence 567778877765555555433 22 357788888877732 222223344667777788877774 3333321
Q ss_pred cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecC
Q 012933 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC 272 (453)
Q Consensus 227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 272 (453)
+..+ .+|+.|.+++++--.. ..-..+.++.+|+.|+++.-
T Consensus 191 ---IS~L-knLq~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 191 ---ISRL-KNLQVLSMRNLEFESY--QDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ---Hhcc-ccHHHHhccCCCCCch--hhHHHHhcccCCCeeecccc
Confidence 1112 6666666666542211 01124556667777777653
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.12 E-value=0.00013 Score=66.24 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=77.7
Q ss_pred hhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCcc
Q 012933 134 STIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS 213 (453)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (453)
+.+..+..++.-.|.++.|+++.+. +..+-. + ..+++|++|++++. .++.. .++-..+.|++.|.++++ .
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n---L--a~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL~La~N-~ 363 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNR-IRTVQN---L--AELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTLKLAQN-K 363 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccc-eeeehh---h--hhcccceEeecccc-hhHhh--hhhHhhhcCEeeeehhhh-h
Confidence 4667777777778899999998876 433222 2 35889999999984 34332 234567889999998873 5
Q ss_pred chhhhcccccccccCCCCCCCCccceeeeccC--CCcceeccCCCcccCCCCccEEeeecCC
Q 012933 214 IEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL--PKLKRFCNFTGNIIELPELQHLTIQNCP 273 (453)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 273 (453)
++++.++.. + =+|..|++.+. .++..+ ..++++|.|+++.+.+.+
T Consensus 364 iE~LSGL~K----------L-YSLvnLDl~~N~Ie~ldeV----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 364 IETLSGLRK----------L-YSLVNLDLSSNQIEELDEV----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhhhhHh----------h-hhheeccccccchhhHHHh----cccccccHHHHHhhcCCC
Confidence 666543221 1 45777777664 344443 678899999999998865
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.06 E-value=5.1e-05 Score=74.54 Aligned_cols=125 Identities=19% Similarity=0.220 Sum_probs=75.7
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+..|.+|+++. +.+...+.. . .+--|+.|.+.+ ++++.+|.+++..+.|..|+.+ .+.+.
T Consensus 120 L~~lt~l~ls~-NqlS~lp~~--l-C~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s---------------~nei~ 179 (722)
T KOG0532|consen 120 LEALTFLDLSS-NQLSHLPDG--L-CDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVS---------------KNEIQ 179 (722)
T ss_pred hhHHHHhhhcc-chhhcCChh--h-hcCcceeEEEec-CccccCCcccccchhHHHhhhh---------------hhhhh
Confidence 55555555554 334444433 1 223466666666 4677777777777777777777 44556
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (453)
.++..+.++.+|+.|.+..+. +..++... . .-.|.+|+++ |+++..+ |.. +.+|+.|++|.++++
T Consensus 180 slpsql~~l~slr~l~vrRn~-l~~lp~El----~-~LpLi~lDfS-cNkis~i-Pv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNH-LEDLPEEL----C-SLPLIRLDFS-CNKISYL-PVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhh-hhhCCHHH----h-CCceeeeecc-cCceeec-chh-hhhhhhheeeeeccC
Confidence 666677777777777776665 44444333 1 1246677777 3455544 555 677777777777664
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00036 Score=63.46 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=113.0
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccc-cccccCCCcceEeecCCCCccccccC
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE-NYTLEFPSLERVSMTHCPNMKTFSHG 104 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~ 104 (453)
..-++-|.+.+| .+..+.... ......+.++.+++.+ +.+.+|... ....++|.|+.|+++.++--..+...
T Consensus 44 ~ra~ellvln~~-~id~~gd~~-----~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l 116 (418)
T KOG2982|consen 44 LRALELLVLNGS-IIDNEGDVM-----LFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL 116 (418)
T ss_pred ccchhhheecCC-CCCcchhHH-----HHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence 445667778887 344332211 1223477899999998 567777543 33568999999999886532222211
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC----CCcccccCCCCCcCccCCCcEE
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP----HLKEIWHGQALPVSFFNNLARL 180 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~l~~~~l~~L~~L 180 (453)
-.-..+|+.|-+++- .++|. .....+..+|.+++|.++.+. .+.+-... ..-+.++++
T Consensus 117 p~p~~nl~~lVLNgT----~L~w~---------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e-----~~s~~v~tl 178 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGT----GLSWT---------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE-----DWSTEVLTL 178 (418)
T ss_pred cccccceEEEEEcCC----CCChh---------hhhhhhhcchhhhhhhhccchhhhhcccccccc-----ccchhhhhh
Confidence 134567888888852 22333 333344556777777776653 11111111 123467777
Q ss_pred EecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccC
Q 012933 181 VVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIE 260 (453)
Q Consensus 181 ~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 260 (453)
...+|....-.---....-++|+..+.+..|+ +.+...-+ ....||.+.-|+|.. .++.+ |........
T Consensus 179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek--------~se~~p~~~~LnL~~-~~ids-wasvD~Ln~ 247 (418)
T KOG2982|consen 179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK--------GSEPFPSLSCLNLGA-NNIDS-WASVDALNG 247 (418)
T ss_pred hcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc--------cCCCCCcchhhhhcc-ccccc-HHHHHHHcC
Confidence 77777522100000112345666767666653 22211111 111335555555543 23444 333345667
Q ss_pred CCCccEEeeecCCCC
Q 012933 261 LPELQHLTIQNCPDM 275 (453)
Q Consensus 261 l~~L~~L~l~~c~~l 275 (453)
+|+|..|.+...+-.
T Consensus 248 f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLS 262 (418)
T ss_pred CchhheeeccCCccc
Confidence 888888888775543
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.79 E-value=0.00097 Score=42.94 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=19.0
Q ss_pred CccceeeccCCCccccCCCCCCCCCCCEEecccCcccccc
Q 012933 348 NLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL 387 (453)
Q Consensus 348 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 387 (453)
+|++|++++ +.++++|..+.++++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455555555 345555554555556666666553 34443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.70 E-value=0.00087 Score=66.30 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=117.3
Q ss_pred cccCcccccceEEeccccchhhhhccccccccccccccc-ccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFS-KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
......+.++.|++.+. .+.+|+...+. ++ +|+.|++++ ..+..++.. ...+++|+.|++.+++ +.
T Consensus 110 ~~~~~~~~l~~L~l~~n-~i~~i~~~~~~--------~~~nL~~L~l~~-N~i~~l~~~--~~~l~~L~~L~l~~N~-l~ 176 (394)
T COG4886 110 SELLELTNLTSLDLDNN-NITDIPPLIGL--------LKSNLKELDLSD-NKIESLPSP--LRNLPNLKNLDLSFND-LS 176 (394)
T ss_pred hhhhcccceeEEecCCc-ccccCcccccc--------chhhcccccccc-cchhhhhhh--hhccccccccccCCch-hh
Confidence 34444577899999985 78888876554 53 899999998 556555322 5689999999999974 88
Q ss_pred ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~ 179 (453)
.+|......++|+.|++++ +.+..++..+.....|+++.++++..... .... ..+.++..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~---------------N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~----~~~~~l~~ 236 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSG---------------NKISDLPPEIELLSALEELDLSNNSIIEL-LSSL----SNLKNLSG 236 (394)
T ss_pred hhhhhhhhhhhhhheeccC---------------CccccCchhhhhhhhhhhhhhcCCcceec-chhh----hhcccccc
Confidence 8877666889999999984 45556665544456688888888752222 1111 33556666
Q ss_pred EEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCc
Q 012933 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKL 248 (453)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 248 (453)
+.+.+. .+... ...+..+++++.|+++++ .+.++.. .. ...+++.|.+.+..-.
T Consensus 237 l~l~~n-~~~~~--~~~~~~l~~l~~L~~s~n-~i~~i~~----------~~-~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 237 LELSNN-KLEDL--PESIGNLSNLETLDLSNN-QISSISS----------LG-SLTNLRELDLSGNSLS 290 (394)
T ss_pred cccCCc-eeeec--cchhccccccceeccccc-ccccccc----------cc-ccCccCEEeccCcccc
Confidence 664443 22221 234777888888888774 4444422 11 2277888888775433
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.63 E-value=0.0021 Score=63.53 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=104.5
Q ss_pred cCCCcceEeecCCCCccccccCccCCC-CcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc
Q 012933 83 EFPSLERVSMTHCPNMKTFSHGILSTP-KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK 161 (453)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 161 (453)
.++.++.|++.+. .++.++....... +|+.|+++ .+.+..++..+..+++|+.|.+++++ +.
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~---------------~N~i~~l~~~~~~l~~L~~L~l~~N~-l~ 176 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLS---------------DNKIESLPSPLRNLPNLKNLDLSFND-LS 176 (394)
T ss_pred cccceeEEecCCc-ccccCccccccchhhccccccc---------------ccchhhhhhhhhccccccccccCCch-hh
Confidence 4567888888774 5777777666664 88888888 45566666667778888888888886 55
Q ss_pred ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceee
Q 012933 162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLR 241 (453)
Q Consensus 162 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 241 (453)
+++... ...++|+.|++++. .+..+ +.. ......|+.+.+++...+..+.... -+.++..+.
T Consensus 177 ~l~~~~----~~~~~L~~L~ls~N-~i~~l-~~~-~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~ 238 (394)
T COG4886 177 DLPKLL----SNLSNLNNLDLSGN-KISDL-PPE-IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLE 238 (394)
T ss_pred hhhhhh----hhhhhhhheeccCC-ccccC-chh-hhhhhhhhhhhhcCCcceecchhhh-----------hcccccccc
Confidence 555442 24688888888885 34444 322 2345558888887764333321111 114444444
Q ss_pred eccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 242 LIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 242 L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
+.+.. +..+ +..+..+++++.|+++++. +..++. ++.+.+++.|++++.
T Consensus 239 l~~n~-~~~~---~~~~~~l~~l~~L~~s~n~-i~~i~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 239 LSNNK-LEDL---PESIGNLSNLETLDLSNNQ-ISSISS----LGSLTNLRELDLSGN 287 (394)
T ss_pred cCCce-eeec---cchhccccccceecccccc-cccccc----ccccCccCEEeccCc
Confidence 33222 2211 2456677778888887643 333332 345567777777765
No 48
>PLN03150 hypothetical protein; Provisional
Probab=96.40 E-value=0.006 Score=63.89 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCc
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 212 (453)
.++..+..+++|+.|+++++.-...++... ..+++|+.|+++++ .+....|.. +..+++|+.|+++++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCc
Confidence 344555666777777777765222333322 44677777777775 344444443 6777777777777754
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.0044 Score=56.58 Aligned_cols=215 Identities=16% Similarity=0.054 Sum_probs=115.1
Q ss_pred CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933 108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN 187 (453)
Q Consensus 108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 187 (453)
+..++.+++.++ ..+.+.++...+..+|.|++|+++.+.--..+-. +| --..||+.|.+.|..
T Consensus 70 ~~~v~elDL~~N------------~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~---lp-~p~~nl~~lVLNgT~- 132 (418)
T KOG2982|consen 70 VTDVKELDLTGN------------LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS---LP-LPLKNLRVLVLNGTG- 132 (418)
T ss_pred hhhhhhhhcccc------------hhccHHHHHHHHhcCccceEeeccCCcCCCcccc---Cc-ccccceEEEEEcCCC-
Confidence 556677777643 2445667777788899999999988763333222 22 226799999999853
Q ss_pred ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec-cCCCcccCCCCccE
Q 012933 188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQH 266 (453)
Q Consensus 188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~l~~L~~ 266 (453)
+.-.-....+..++.++.|.+++++.-.-.... ++ ....-|.+++|++..|.... | +......-||++..
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd---~c----~e~~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD---NC----IEDWSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNS 203 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhcccc---cc----ccccchhhhhhhcCCcHHHH--HHHHHhHHhhcccchh
Confidence 322223345677888888888775221111110 11 11121678888887775322 2 11223345888888
Q ss_pred EeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC--Ccccc
Q 012933 267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN--DESNK 344 (453)
Q Consensus 267 L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~~ 344 (453)
+.+..|+--+.-...+ ..+++.+--|.+..+..-.++ ..++...||.|..|.+...+-...+..+. +-..+
T Consensus 204 v~v~e~PlK~~s~ek~--se~~p~~~~LnL~~~~idswa-----svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKG--SEPFPSLSCLNLGANNIDSWA-----SVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred eeeecCcccchhhccc--CCCCCcchhhhhcccccccHH-----HHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 8888775322212221 333444444444433111100 22345567777777777665444433211 11124
Q ss_pred cCCCccceeec
Q 012933 345 AFANLESLEIS 355 (453)
Q Consensus 345 ~l~~L~~L~l~ 355 (453)
.++++|.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 55555555444
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.33 E-value=0.0055 Score=64.19 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=55.5
Q ss_pred cceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHH
Q 012933 61 LKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY 140 (453)
Q Consensus 61 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 140 (453)
++.|+++++ .+...... ....+++|+.|+++++.-...+|..+..+++|+.|+++.+ .....++
T Consensus 420 v~~L~L~~n-~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--------------~lsg~iP 483 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--------------SFNGSIP 483 (623)
T ss_pred EEEEECCCC-CccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--------------CCCCCCc
Confidence 455555552 23322111 1445666777777665433356656666667777766642 1122345
Q ss_pred HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCc
Q 012933 141 EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNM 188 (453)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 188 (453)
..+..+++|++|+++++.-...+|... . ..+.++..+++.++..+
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l--~-~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPAAL--G-GRLLHRASFNFTDNAGL 528 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCChHH--h-hccccCceEEecCCccc
Confidence 555666777777776665222333221 0 11234556666665433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.33 E-value=0.0035 Score=40.36 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=27.1
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV 364 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 364 (453)
++|++|+++++ .+++++.+. +.+++|+.|+++++ .+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l----~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPEL----SNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHG----TTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchH----hCCCCCCEEEecCC-CCCCCc
Confidence 46788888887 677776533 68888888888884 465553
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.06 E-value=0.00082 Score=66.37 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=94.6
Q ss_pred cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT 100 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 100 (453)
.+..++..|++|+|+.+ ++..+|.++.. =-|+.|.+++ ++++..+.. .+..+.|..|+.++| .+..
T Consensus 115 ~~i~~L~~lt~l~ls~N-qlS~lp~~lC~---------lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~s 180 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSN-QLSHLPDGLCD---------LPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQS 180 (722)
T ss_pred hhhhhhhHHHHhhhccc-hhhcCChhhhc---------CcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhh
Confidence 44677888888999884 78888876653 3478888877 778888777 457788889998886 4777
Q ss_pred cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEE
Q 012933 101 FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARL 180 (453)
Q Consensus 101 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L 180 (453)
+|...+++.+|+.|.++ .+....++.++. .-.|..|+++.++ +..+|... ..+..|++|
T Consensus 181 lpsql~~l~slr~l~vr---------------Rn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~f----r~m~~Lq~l 239 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVR---------------RNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVDF----RKMRHLQVL 239 (722)
T ss_pred chHHhhhHHHHHHHHHh---------------hhhhhhCCHHHh-CCceeeeecccCc-eeecchhh----hhhhhheee
Confidence 88888888888888887 455566666666 3346677776665 66655544 556778888
Q ss_pred EecCCC
Q 012933 181 VVDDCT 186 (453)
Q Consensus 181 ~l~~c~ 186 (453)
.+.+.+
T Consensus 240 ~LenNP 245 (722)
T KOG0532|consen 240 QLENNP 245 (722)
T ss_pred eeccCC
Confidence 887654
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.51 E-value=0.0053 Score=57.25 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=9.5
Q ss_pred cccccceEEecccc
Q 012933 25 IPSSLVNLNVSRCD 38 (453)
Q Consensus 25 ~~~~L~~L~L~~c~ 38 (453)
...+++.++++|+.
T Consensus 28 ~~~s~~~l~lsgnt 41 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT 41 (382)
T ss_pred ccCceEEEeccCCc
Confidence 35667778888753
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.93 E-value=0.011 Score=55.32 Aligned_cols=230 Identities=18% Similarity=0.135 Sum_probs=128.0
Q ss_pred CcccccceEEeccccchh----hhhcccccccccccccccccceeecccccccccccc--ccccccCCCcceEeecCCCC
Q 012933 24 GIPSSLVNLNVSRCDKIE----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCL--ENYTLEFPSLERVSMTHCPN 97 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~----~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~c~~ 97 (453)
..-++|+..++++. ..+ ++|..+. ..+.....+++|++|+|++..-=.+... ...+.++..|++|++.+|.
T Consensus 55 ~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~-~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G- 131 (382)
T KOG1909|consen 55 ASKKELREVNLSDM-FTGRLKDEIPEALK-MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG- 131 (382)
T ss_pred hhcccceeeehHhh-hcCCcHHHHHHHHH-HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-
Confidence 44567888888875 222 3443222 1223455578999999998321111111 1345668999999999985
Q ss_pred ccc--------------cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933 98 MKT--------------FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (453)
Q Consensus 98 l~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 163 (453)
+.. ....+.+.+.||.+....+.- + +-.-..+-......+.|+.+++..+. +..-
T Consensus 132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-------e---n~ga~~~A~~~~~~~~leevr~~qN~-I~~e 200 (382)
T KOG1909|consen 132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-------E---NGGATALAEAFQSHPTLEEVRLSQNG-IRPE 200 (382)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-------c---cccHHHHHHHHHhccccceEEEeccc-ccCc
Confidence 331 233456778899888875321 0 00112233344456889999998775 3211
Q ss_pred ccCC-CCCcCccCCCcEEEecCCCCcccc---CchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccce
Q 012933 164 WHGQ-ALPVSFFNNLARLVVDDCTNMSSA---IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYG 239 (453)
Q Consensus 164 ~~~~-~l~~~~l~~L~~L~l~~c~~l~~~---~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (453)
.... ......+|.|+.|++++.. ++.. .-...++.+++|+.|.+++|. +..- |...+.......+|+|+.
T Consensus 201 G~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~----Ga~a~~~al~~~~p~L~v 274 (382)
T KOG1909|consen 201 GVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENE----GAIAFVDALKESAPSLEV 274 (382)
T ss_pred hhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-cccc----cHHHHHHHHhccCCCCce
Confidence 1000 0123568999999999853 2211 122346778889999999983 2221 111111111123489999
Q ss_pred eeeccCCCcce-eccCCCcccCCCCccEEeeecCC
Q 012933 240 LRLIDLPKLKR-FCNFTGNIIELPELQHLTIQNCP 273 (453)
Q Consensus 240 L~L~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~ 273 (453)
+.+.++.--.+ .-.....+...|.|++|.+++|.
T Consensus 275 l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 275 LELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99988741111 00011234457888888888865
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.87 E-value=0.055 Score=46.85 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF-- 390 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~-- 390 (453)
+..+++|++|.+.++ +++++..... ..+|+|+.|.+.+ +++..+.+ ....+|.|++|.+-+ +.++.-...
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~L~---~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~ 133 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPDLD---TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRL 133 (233)
T ss_pred CCCccccceEEecCC-cceeeccchh---hhccccceEEecC-cchhhhhhcchhccCCccceeeecC-CchhcccCcee
Confidence 446678888888777 6777766554 5677888888888 55655543 245677888887755 333332221
Q ss_pred CcccccCCcceEEEcccc
Q 012933 391 STSESLVNLGRMMIADCK 408 (453)
Q Consensus 391 ~~~~~l~~L~~L~i~~C~ 408 (453)
.+.-.+|+|++||.++..
T Consensus 134 yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEEEecCcceEeehhhhh
Confidence 133467888888887665
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.86 E-value=0.00062 Score=69.06 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred CCCccEEEEeeCCCCccc-ccCCCCCcCccCCCcEEEecCCC
Q 012933 146 FRDMEYLQLSYFPHLKEI-WHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~-~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
++++..+.+...+.-... +... + -|..|++|.+++|+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~i-f---pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISI-F---PFRSLRVLELRGCD 120 (1096)
T ss_pred HhhheeeeecccCCCCCCCCcee-c---cccceeeEEecCcc
Confidence 355555555444422221 2222 2 37899999999986
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.0022 Score=55.22 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=57.8
Q ss_pred CcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-C-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-P-SWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (453)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (453)
.++.++-+++ .+.....+.+ ..+++++.|.+.+|..+.+.-- . .+-.++|+.|++++|+.+++-... ....++
T Consensus 102 ~IeaVDAsds-~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLK 176 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhh
Confidence 3555566666 4555554444 7888888888888876665322 1 224588888888888888875332 334678
Q ss_pred CcceEEEcccchhH
Q 012933 398 NLGRMMIADCKMIE 411 (453)
Q Consensus 398 ~L~~L~i~~C~~l~ 411 (453)
+|+.|.+.+.+.+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 88888888777653
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.017 Score=49.88 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=53.9
Q ss_pred HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchh
Q 012933 140 YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEE 216 (453)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 216 (453)
...+.+++.++.|.+.+|.++.+..... +. ...++|+.|++++|+.+++. ....+..+++|+.|.+.+.+.+..
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 4556778889999999999777643333 33 25799999999999988765 444567788888888877655443
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.34 E-value=0.006 Score=62.23 Aligned_cols=106 Identities=22% Similarity=0.172 Sum_probs=53.3
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (453)
.+|.|+.|+++.+ +++++. .+ ..++.|++|+++. +.++.+|..-..--.|+.|.+++ +.++.+ ....++
T Consensus 185 ll~ale~LnLshN-k~~~v~--~L---r~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL---~gie~L 253 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD--NL---RRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTL---RGIENL 253 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH--HH---Hhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhh---hhHHhh
Confidence 4566666666665 344333 11 4666666666666 55666654221112366666655 555554 234455
Q ss_pred CCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 397 VNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 397 ~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
.+|+.||+++.--.+ -.+-.-...+-.|+.|.|.+||
T Consensus 254 ksL~~LDlsyNll~~-------hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE-------HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhc-------chhhhHHHHHHHHHHHhhcCCc
Confidence 666666654322110 0011122234566667777766
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.19 E-value=0.028 Score=50.54 Aligned_cols=113 Identities=22% Similarity=0.122 Sum_probs=70.5
Q ss_pred ccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC
Q 012933 286 VTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP 365 (453)
Q Consensus 286 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 365 (453)
..+..|+.+.+.++.-.+ +.....+|+|+.|.++++..-.......+ ...+|+|+++.+++ ++++.+..
T Consensus 40 d~~~~le~ls~~n~gltt--------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~-Nki~~lst 108 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--------LTNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSG-NKIKDLST 108 (260)
T ss_pred ccccchhhhhhhccceee--------cccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecC-Cccccccc
Confidence 344567777766653322 34456788999999998732222222221 14569999999999 66665322
Q ss_pred --CCCCCCCCCEEecccCcccccc--cCCCcccccCCcceEEEcccchh
Q 012933 366 --PSWHLENLEALEVSKCHGLINL--LTFSTSESLVNLGRMMIADCKMI 410 (453)
Q Consensus 366 --~~~~l~~L~~L~l~~c~~l~~l--~~~~~~~~l~~L~~L~i~~C~~l 410 (453)
....+.+|..|.+.+|.-.. + .....+.-+++|++++..++..-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred cchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 24467788888888876543 2 11224455788998888777643
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.50 E-value=0.024 Score=50.93 Aligned_cols=134 Identities=22% Similarity=0.180 Sum_probs=75.3
Q ss_pred ccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccccc
Q 012933 236 KLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK 315 (453)
Q Consensus 236 ~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 315 (453)
..+.+.+.+|..... ......-.+..|+.+++.++...+... +..+++|+.|.++++.- .+..++.+ -.
T Consensus 19 ~v~~l~lD~~~s~~g--~~~gl~d~~~~le~ls~~n~gltt~~~-----~P~Lp~LkkL~lsdn~~-~~~~~l~v---l~ 87 (260)
T KOG2739|consen 19 QVDELFLDNARSGAG--KLGGLTDEFVELELLSVINVGLTTLTN-----FPKLPKLKKLELSDNYR-RVSGGLEV---LA 87 (260)
T ss_pred hhhhhhcchhhhcCC--Ccccccccccchhhhhhhccceeeccc-----CCCcchhhhhcccCCcc-ccccccee---hh
Confidence 355566665532221 112233345566677766654322211 34566999999988611 10011111 11
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC----CCCCCCCCCEEecccCccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP----PSWHLENLEALEVSKCHGL 384 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l 384 (453)
...|+|+++.++++ .++.+. .......+.+|..|++..|.... +-. .+.-+++|+.|+-..+..-
T Consensus 88 e~~P~l~~l~ls~N-ki~~ls--tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGN-KIKDLS--TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhCCceeEEeecCC-cccccc--ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 24499999999998 555432 11222678889999999986443 322 1445788888887665443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.21 E-value=0.16 Score=44.02 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=31.0
Q ss_pred ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCC
Q 012933 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCP 96 (453)
Q Consensus 20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 96 (453)
+..+..++.|.+|.++++ ++..|-..++. .+++|+.|.+.+ +++..+..-+....+|+|++|.+-+++
T Consensus 57 l~~lp~l~rL~tLll~nN-rIt~I~p~L~~-------~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNN-RITRIDPDLDT-------FLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccCCCccccceEEecCC-cceeeccchhh-------hccccceEEecC-cchhhhhhcchhccCCccceeeecCCc
Confidence 333444555555555553 45444333322 245555555554 333333333333445555555555443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.40 E-value=1.3 Score=35.56 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=11.4
Q ss_pred CcCEEeecCCCCcceecccCCcccccCCCccceeec
Q 012933 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEIS 355 (453)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~ 355 (453)
+++.+.+.+ .+..+....| ..+++|+.+.+.
T Consensus 59 ~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~ 89 (129)
T PF13306_consen 59 SLESITFPN--NLKSIGDNAF---SNCTNLKNIDIP 89 (129)
T ss_dssp T-EEEEETS--TT-EE-TTTT---TT-TTECEEEET
T ss_pred ccccccccc--cccccccccc---cccccccccccC
Confidence 344444432 3334444444 344444444443
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.35 E-value=0.11 Score=27.69 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=6.2
Q ss_pred cCEEeecCCCCcceec
Q 012933 321 LRWLELSGLHKVQHLW 336 (453)
Q Consensus 321 L~~L~l~~~~~l~~l~ 336 (453)
|++|++++| .++.+|
T Consensus 2 L~~Ldls~n-~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIP 16 (22)
T ss_dssp ESEEEETSS-EESEEG
T ss_pred ccEEECCCC-cCEeCC
Confidence 344444444 333333
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.01 E-value=0.016 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=11.0
Q ss_pred hhHHHHHHhhcCCCCccEEEEeeCC
Q 012933 134 STIQKCYEEMIGFRDMEYLQLSYFP 158 (453)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~ 158 (453)
+.+.++|.++..++.|+.++++.++
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCc
Confidence 3344444444444444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.91 E-value=1.6 Score=35.12 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC
Q 012933 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP 365 (453)
Q Consensus 318 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 365 (453)
.++|+.+.+.. .+..+....| ... .|+.+.+.. .++.++.
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f---~~~-~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSF---SNC-NLKEINIPS--NITKIEE 119 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTT---TT--T--EEE-TT--B-SS---
T ss_pred cccccccccCc--cccEEchhhh---cCC-CceEEEECC--CccEECC
Confidence 46777777754 3667777766 555 777776654 3444443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.78 E-value=0.14 Score=25.33 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=9.8
Q ss_pred cccceEEeccccchhhhh
Q 012933 27 SSLVNLNVSRCDKIEEII 44 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~ 44 (453)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888874 66654
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.97 E-value=0.069 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=12.7
Q ss_pred ccccchhhhhhHHHHHHhhhhc
Q 012933 429 KELSCETMSKNEDLLSRSLRHT 450 (453)
Q Consensus 429 ~~l~~l~l~~~~~~~~~~~~~~ 450 (453)
|+|+.|+++.|+.++++++++.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555566666666666665554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.014 Score=52.96 Aligned_cols=103 Identities=17% Similarity=0.009 Sum_probs=57.9
Q ss_pred CCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--
Q 012933 288 TDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-- 365 (453)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-- 365 (453)
+.+.+.|+.++|.--. + ......|.|+.|.++=+ +++++.. + ..+++|++|.+.. +.+.++.+
T Consensus 18 l~~vkKLNcwg~~L~D----I----sic~kMp~lEVLsLSvN-kIssL~p--l---~rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----I----SICEKMPLLEVLSLSVN-KISSLAP--L---QRCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccH----H----HHHHhcccceeEEeecc-ccccchh--H---HHHHHHHHHHHHh-cccccHHHHH
Confidence 4466677777762111 0 11225577777777665 4555432 2 5778888888887 55655543
Q ss_pred CCCCCCCCCEEecccCcccccccCC---CcccccCCcceEEEc
Q 012933 366 PSWHLENLEALEVSKCHGLINLLTF---STSESLVNLGRMMIA 405 (453)
Q Consensus 366 ~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~i~ 405 (453)
+..++|+|+.|-+...+--..-+.. .+...+|+|++||=.
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 4567788888777553322221110 133456777777643
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.52 E-value=0.051 Score=44.12 Aligned_cols=55 Identities=15% Similarity=0.382 Sum_probs=28.5
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEec
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVT 117 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 117 (453)
.|+..++++ +.+++++.. +...+|-++.+++.++ ++..+|..+..++.|+.++++
T Consensus 54 el~~i~ls~-N~fk~fp~k-ft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKK-FTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred eEEEEeccc-chhhhCCHH-Hhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 444455555 344444433 2344555555555553 455555555555666666555
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.28 E-value=0.17 Score=50.38 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=66.0
Q ss_pred ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcc
Q 012933 314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTS 393 (453)
Q Consensus 314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 393 (453)
..+.+.+|+.|++.++ .++.+... . ..+++|+.|++++ +.++++.. +..++.|+.|++.+ +.++++.. .
T Consensus 90 ~l~~~~~l~~l~l~~n-~i~~i~~~-l---~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~---~ 158 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN-KIEKIENL-L---SSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG---L 158 (414)
T ss_pred ccccccceeeeecccc-chhhcccc-h---hhhhcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC---C
Confidence 3678899999999998 66666542 1 6899999999999 77877643 45677799999987 77888754 4
Q ss_pred cccCCcceEEEcccchh
Q 012933 394 ESLVNLGRMMIADCKMI 410 (453)
Q Consensus 394 ~~l~~L~~L~i~~C~~l 410 (453)
..+++|+.+++.++...
T Consensus 159 ~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccchhhhcccCCcchhh
Confidence 45788999998877643
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.43 E-value=0.31 Score=48.56 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+++|+.|++.+ .+++++... ...+++|++|+++++ +++.+ .++..++.|+.|++.++. +.
T Consensus 94 ~~~l~~l~l~~-n~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~---------------i~ 153 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEKIENL--LSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL---------------IS 153 (414)
T ss_pred ccceeeeeccc-cchhhcccc--hhhhhcchheecccc-ccccc-cchhhccchhhheeccCc---------------ch
Confidence 66777777776 444444331 345677777777774 45544 223445556666666431 11
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccC-CCCCcCccCCCcEEEecCCC
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHG-QALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~l~~~~l~~L~~L~l~~c~ 186 (453)
.+ .....+++|+.++++++. +..+... . +.+++++.+.+.+..
T Consensus 154 ~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~----~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 154 DI-SGLESLKSLKLLDLSYNR-IVDIENDEL----SELISLEELDLGGNS 197 (414)
T ss_pred hc-cCCccchhhhcccCCcch-hhhhhhhhh----hhccchHHHhccCCc
Confidence 11 111225667777777765 3332221 1 346777777777643
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=0.051 Score=49.42 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=23.8
Q ss_pred CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEecc
Q 012933 148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRN 210 (453)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~ 210 (453)
+.+.|+.-+|. +.++.... .+|.|+.|.++= ++++++.| +..+++|+.|.+..
T Consensus 20 ~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRk 72 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRK 72 (388)
T ss_pred HhhhhcccCCC-ccHHHHHH-----hcccceeEEeec-cccccchh---HHHHHHHHHHHHHh
Confidence 34444544443 44433332 245555555553 23333222 44555555555543
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=81.35 E-value=0.81 Score=41.76 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=82.4
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeecccccc--c-cccccc-----cccccCCCcceEeecCCC
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPT--L-TSFCLE-----NYTLEFPSLERVSMTHCP 96 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l-~~~~~~-----~~~~~l~~L~~L~l~~c~ 96 (453)
.+..++.++|||+..-++--..+.+ ..-.-.+|+..++++.-. . ..++.. ....+||+|+..+++++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~----~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCN----VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHH----HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3677889999996422221111111 111245666666664210 0 011100 224568888888888865
Q ss_pred Ccccccc----CccCCCCcceEEeccccccccccccCCccchhHH------HHHHhhcCCCCccEEEEeeCCCCcc----
Q 012933 97 NMKTFSH----GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ------KCYEEMIGFRDMEYLQLSYFPHLKE---- 162 (453)
Q Consensus 97 ~l~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~l~~---- 162 (453)
.-..+|. -+++...|.+|.+++|-- .+..|. .+. ...+.+..-|.|++.....++ +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl---Gp~aG~----rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~ 175 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL---GPIAGG----RIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKE 175 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC---Cccchh----HHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHH
Confidence 3222322 244567788888886510 111111 111 111233445677777776665 221
Q ss_pred cccCCCCCcCccCCCcEEEecCCCCc----cccCchhHHhhcCCCcEEEeccC
Q 012933 163 IWHGQALPVSFFNNLARLVVDDCTNM----SSAIPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 163 ~~~~~~l~~~~l~~L~~L~l~~c~~l----~~~~~~~~l~~l~~L~~L~l~~~ 211 (453)
.|... + .+-.+|+++.+.....- +..... .+..+.+|+.|++.++
T Consensus 176 ~~a~~-l--~sh~~lk~vki~qNgIrpegv~~L~~~-gl~y~~~LevLDlqDN 224 (388)
T COG5238 176 LSAAL-L--ESHENLKEVKIQQNGIRPEGVTMLAFL-GLFYSHSLEVLDLQDN 224 (388)
T ss_pred HHHHH-H--HhhcCceeEEeeecCcCcchhHHHHHH-HHHHhCcceeeecccc
Confidence 12111 1 12257888877754211 111111 1445677777777764
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.22 E-value=1.6 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=12.5
Q ss_pred CCcCEEeecCCCCcceecccCC
Q 012933 319 PRLRWLELSGLHKVQHLWKEND 340 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~ 340 (453)
++|++|+++++ .++.++.+.|
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCC-cCCcCCHHHc
Confidence 45666666666 5666655544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.22 E-value=1.6 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=12.5
Q ss_pred CCcCEEeecCCCCcceecccCC
Q 012933 319 PRLRWLELSGLHKVQHLWKEND 340 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~ 340 (453)
++|++|+++++ .++.++.+.|
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCC-cCCcCCHHHc
Confidence 45666666666 5666655544
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=64.73 E-value=5.5 Score=36.59 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=79.7
Q ss_pred ccccccccceeecccccccccccc--ccccccCCCcceEeecCCCCccccc--------------cCccCCCCcceEEec
Q 012933 54 NRIAFSKLKVLILDYLPTLTSFCL--ENYTLEFPSLERVSMTHCPNMKTFS--------------HGILSTPKLHKVQVT 117 (453)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~--------------~~~~~~~~L~~L~l~ 117 (453)
....||+|+..++++..-=..++. ++...+...|.+|.+.+|. +..+. .....-|.|+.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 334488899999887331112211 2446677889999998874 43222 234456778887776
Q ss_pred cccccccccccCCccchhHHHHHHhh-cCCCCccEEEEeeCCCCcccccCCC----CCcCccCCCcEEEecCCCCcccc-
Q 012933 118 EKEEGELHHWEGNKLNSTIQKCYEEM-IGFRDMEYLQLSYFPHLKEIWHGQA----LPVSFFNNLARLVVDDCTNMSSA- 191 (453)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~----l~~~~l~~L~~L~l~~c~~l~~~- 191 (453)
.+. +.+.....+... ..-.+|+++.+..+. ++.- +.. ...-.+.+|+.|++.+.. ++..
T Consensus 166 rNR-----------lengs~~~~a~~l~sh~~lk~vki~qNg-Irpe--gv~~L~~~gl~y~~~LevLDlqDNt-ft~~g 230 (388)
T COG5238 166 RNR-----------LENGSKELSAALLESHENLKEVKIQQNG-IRPE--GVTMLAFLGLFYSHSLEVLDLQDNT-FTLEG 230 (388)
T ss_pred cch-----------hccCcHHHHHHHHHhhcCceeEEeeecC-cCcc--hhHHHHHHHHHHhCcceeeeccccc-hhhhh
Confidence 432 112222222222 222478888887765 3321 110 011357889999998743 2211
Q ss_pred --CchhHHhhcCCCcEEEeccC
Q 012933 192 --IPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 192 --~~~~~l~~l~~L~~L~l~~~ 211 (453)
.-...++..+.|..|.+.+|
T Consensus 231 S~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHhcccchhhhccccch
Confidence 12224566777889988887
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.84 E-value=13 Score=19.79 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=8.8
Q ss_pred ccccceEEeccccchh
Q 012933 26 PSSLVNLNVSRCDKIE 41 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~ 41 (453)
+++|+.|+|++|. ++
T Consensus 1 ~~~L~~L~l~~n~-i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-IT 15 (24)
T ss_dssp -TT-SEEE-TSSB-EH
T ss_pred CCCCCEEEccCCc-CC
Confidence 4678888888874 44
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.28 E-value=17 Score=20.28 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=7.0
Q ss_pred CccceeeccCCCccccC
Q 012933 348 NLESLEISECSKLQKLV 364 (453)
Q Consensus 348 ~L~~L~l~~c~~l~~l~ 364 (453)
+|+.|++++ +.++.+|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 344444444 3344444
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=30.26 E-value=51 Score=18.31 Aligned_cols=11 Identities=36% Similarity=0.287 Sum_probs=6.2
Q ss_pred CCcCEEeecCC
Q 012933 319 PRLRWLELSGL 329 (453)
Q Consensus 319 ~~L~~L~l~~~ 329 (453)
++|+.|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 35556666555
Done!