Query 012933
Match_columns 453
No_of_seqs 157 out of 2067
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 218.0 17.6 338 55-440 202-598 (636)
2 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-22 6.6E-27 209.2 25.3 86 23-119 76-163 (606)
3 3rgz_A Protein brassinosteroid 99.9 8.2E-24 2.8E-28 225.2 14.4 343 20-409 193-550 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 6.8E-23 2.3E-27 218.0 19.7 63 55-120 444-526 (876)
5 3rgz_A Protein brassinosteroid 99.9 1.6E-23 5.5E-28 223.0 13.6 357 23-440 174-549 (768)
6 3t6q_A CD180 antigen; protein- 99.9 1.6E-21 5.6E-26 202.2 26.5 85 22-118 52-138 (606)
7 4eco_A Uncharacterized protein 99.9 3.5E-23 1.2E-27 215.6 12.9 328 23-409 202-599 (636)
8 3t6q_A CD180 antigen; protein- 99.9 4.4E-21 1.5E-25 199.0 27.2 159 21-211 27-189 (606)
9 1o6v_A Internalin A; bacterial 99.9 1.8E-21 6.1E-26 195.4 23.0 149 20-211 61-209 (466)
10 4fmz_A Internalin; leucine ric 99.9 8.8E-22 3E-26 189.9 19.8 308 19-408 36-344 (347)
11 3v47_A TOLL-like receptor 5B a 99.9 7.7E-21 2.6E-25 190.2 25.0 337 25-408 28-406 (455)
12 1ziw_A TOLL-like receptor 3; i 99.9 1E-20 3.6E-25 198.9 26.1 86 317-408 428-515 (680)
13 2z63_A TOLL-like receptor 4, v 99.9 2.8E-21 9.7E-26 198.9 20.7 239 173-440 280-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-21 9.5E-26 198.1 19.0 126 258-408 383-508 (549)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-20 3.8E-25 196.0 22.8 156 260-439 326-483 (606)
16 4ecn_A Leucine-rich repeat pro 99.9 2.5E-21 8.4E-26 206.0 16.7 323 25-409 489-839 (876)
17 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-20 8.1E-25 191.1 22.5 60 369-440 449-508 (549)
18 4fmz_A Internalin; leucine ric 99.9 2.5E-20 8.6E-25 179.7 21.3 298 7-382 47-344 (347)
19 1o6v_A Internalin A; bacterial 99.9 2.3E-20 7.8E-25 187.4 21.5 328 24-439 43-385 (466)
20 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-20 2.9E-24 196.3 25.9 287 25-356 22-371 (844)
21 2id5_A Lingo-1, leucine rich r 99.8 1.2E-19 4.2E-24 182.6 24.8 301 21-380 26-329 (477)
22 3o6n_A APL1; leucine-rich repe 99.8 3.5E-20 1.2E-24 181.6 20.2 306 25-408 43-350 (390)
23 2z7x_B TOLL-like receptor 1, v 99.8 2.4E-20 8.3E-25 189.8 19.7 157 259-440 321-479 (520)
24 2z63_A TOLL-like receptor 4, v 99.8 2.5E-20 8.7E-25 191.7 19.1 132 286-439 370-504 (570)
25 1ziw_A TOLL-like receptor 3; i 99.8 9.2E-20 3.1E-24 191.7 23.7 237 147-408 381-620 (680)
26 2z7x_B TOLL-like receptor 1, v 99.8 7.6E-20 2.6E-24 186.2 19.7 156 234-408 323-479 (520)
27 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-19 4.9E-24 194.5 22.5 107 317-439 424-536 (844)
28 3bz5_A Internalin-J, INLJ; leu 99.8 3E-20 1E-24 185.5 15.4 298 20-408 35-350 (457)
29 3o6n_A APL1; leucine-rich repe 99.8 1.4E-19 4.8E-24 177.3 19.6 305 58-440 44-350 (390)
30 3v47_A TOLL-like receptor 5B a 99.8 4E-19 1.4E-23 177.6 21.1 331 6-382 32-406 (455)
31 3oja_B Anopheles plasmodium-re 99.8 3.3E-19 1.1E-23 184.4 20.1 306 25-408 49-356 (597)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.7E-19 1.9E-23 181.5 21.5 82 317-408 426-508 (562)
33 2id5_A Lingo-1, leucine rich r 99.8 5.1E-19 1.7E-23 178.1 20.1 315 30-408 14-331 (477)
34 3oja_B Anopheles plasmodium-re 99.8 5.2E-19 1.8E-23 182.9 19.2 305 58-440 50-356 (597)
35 3bz5_A Internalin-J, INLJ; leu 99.8 9.2E-19 3.1E-23 174.8 20.0 300 6-387 44-354 (457)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.1E-19 2.4E-23 180.7 19.7 157 259-440 350-508 (562)
37 1jl5_A Outer protein YOPM; leu 99.8 5E-18 1.7E-22 169.3 20.0 333 23-440 30-407 (454)
38 3ogk_B Coronatine-insensitive 99.8 1.2E-20 4.3E-25 195.0 0.9 172 25-212 110-304 (592)
39 2p1m_B Transport inhibitor res 99.8 2.7E-21 9.3E-26 200.0 -6.1 114 318-441 396-518 (594)
40 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-17 9.2E-22 171.1 23.7 134 258-406 441-576 (635)
41 1xku_A Decorin; proteoglycan, 99.8 2.6E-17 8.8E-22 157.4 21.5 129 262-407 192-329 (330)
42 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-17 5.5E-22 159.0 19.7 192 60-299 34-227 (332)
43 2p1m_B Transport inhibitor res 99.8 7E-20 2.4E-24 189.4 2.9 353 25-409 103-518 (594)
44 1xku_A Decorin; proteoglycan, 99.8 8.6E-17 2.9E-21 153.8 24.2 291 60-439 32-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 9.9E-18 3.4E-22 160.5 17.6 290 26-408 32-331 (332)
46 3ogk_B Coronatine-insensitive 99.8 5.4E-21 1.9E-25 197.7 -5.9 396 24-450 70-533 (592)
47 4fcg_A Uncharacterized protein 99.8 6.1E-18 2.1E-22 161.6 14.0 230 26-297 80-309 (328)
48 1jl5_A Outer protein YOPM; leu 99.7 1.4E-17 4.8E-22 166.1 15.2 265 25-380 9-286 (454)
49 4g8a_A TOLL-like receptor 4; l 99.7 2.3E-16 8E-21 164.0 24.3 231 172-440 346-578 (635)
50 4fcg_A Uncharacterized protein 99.7 1.6E-16 5.6E-21 151.6 18.4 224 146-405 80-309 (328)
51 1ogq_A PGIP-2, polygalacturona 99.7 1.5E-16 5.2E-21 150.9 13.7 255 85-386 50-306 (313)
52 1ogq_A PGIP-2, polygalacturona 99.7 9.6E-17 3.3E-21 152.3 10.1 255 27-364 50-308 (313)
53 2z80_A TOLL-like receptor 2, v 99.7 5.9E-16 2E-20 149.4 14.7 235 145-408 74-312 (353)
54 3zyj_A Leucine-rich repeat-con 99.7 5.3E-15 1.8E-19 147.1 21.9 203 174-408 87-290 (440)
55 2z80_A TOLL-like receptor 2, v 99.7 3.3E-16 1.1E-20 151.2 12.8 275 26-382 30-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.6 7.7E-15 2.6E-19 151.1 21.6 75 319-408 221-295 (622)
57 3zyi_A Leucine-rich repeat-con 99.6 8.4E-15 2.9E-19 146.2 21.2 243 87-407 56-300 (452)
58 1z7x_W Ribonuclease inhibitor; 99.6 4.3E-18 1.5E-22 170.4 -3.4 376 23-441 24-442 (461)
59 3g06_A SSPH2 (leucine-rich rep 99.6 6.1E-15 2.1E-19 151.9 19.7 256 27-382 40-295 (622)
60 3zyj_A Leucine-rich repeat-con 99.6 1.8E-14 6.2E-19 143.2 21.0 179 145-356 110-288 (440)
61 3zyi_A Leucine-rich repeat-con 99.6 1.5E-14 5.2E-19 144.3 20.1 223 85-356 75-299 (452)
62 1z7x_W Ribonuclease inhibitor; 99.6 5.1E-18 1.7E-22 169.9 -5.5 377 26-440 2-409 (461)
63 2z66_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 136.8 17.2 60 317-380 197-257 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-15 1.3E-19 141.5 12.7 194 142-380 53-246 (317)
65 1ozn_A Reticulon 4 receptor; N 99.6 3.1E-14 1.1E-18 133.0 17.8 205 174-408 31-236 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.6 1.7E-15 6E-20 143.8 7.9 245 58-387 33-278 (317)
67 2xwt_C Thyrotropin receptor; s 99.6 8.7E-14 3E-18 126.4 16.3 83 317-409 153-238 (239)
68 2ast_B S-phase kinase-associat 99.5 5.8E-15 2E-19 141.3 8.3 210 85-329 70-282 (336)
69 2z66_A Variable lymphocyte rec 99.5 2E-13 7E-18 128.8 18.4 207 173-408 50-259 (306)
70 1ozn_A Reticulon 4 receptor; N 99.5 3.5E-14 1.2E-18 132.6 11.7 15 258-272 149-163 (285)
71 1wwl_A Monocyte differentiatio 99.5 1E-14 3.4E-19 138.2 7.3 84 23-119 39-131 (312)
72 4ay9_X Follicle-stimulating ho 99.5 2.7E-13 9.3E-18 130.5 16.9 241 89-406 13-255 (350)
73 3oja_A Leucine-rich immune mol 99.5 1.4E-13 4.7E-18 138.5 15.3 194 142-380 53-246 (487)
74 2xwt_C Thyrotropin receptor; s 99.5 2.3E-13 7.9E-18 123.6 15.0 204 175-442 31-239 (239)
75 3oja_A Leucine-rich immune mol 99.5 2.4E-13 8.3E-18 136.7 16.5 239 58-381 33-272 (487)
76 2ast_B S-phase kinase-associat 99.5 2.2E-14 7.5E-19 137.2 7.1 253 27-337 47-310 (336)
77 2z62_A TOLL-like receptor 4, v 99.5 1.7E-12 5.7E-17 120.5 17.2 209 175-413 28-246 (276)
78 1p9a_G Platelet glycoprotein I 99.5 1.6E-12 5.3E-17 121.7 16.6 198 144-380 7-204 (290)
79 4ay9_X Follicle-stimulating ho 99.5 1.1E-12 3.7E-17 126.2 15.9 226 174-439 29-256 (350)
80 2o6q_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 118.2 17.0 197 148-406 17-214 (270)
81 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.6E-17 124.0 13.1 81 22-118 36-116 (308)
82 1h6u_A Internalin H; cell adhe 99.4 2.6E-12 8.8E-17 121.3 14.4 194 146-388 40-233 (308)
83 1wwl_A Monocyte differentiatio 99.4 1.2E-13 4.1E-18 130.8 5.0 208 145-408 93-307 (312)
84 3rfs_A Internalin B, repeat mo 99.4 7.2E-12 2.5E-16 116.0 15.6 177 172-381 38-215 (272)
85 2o6q_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 116.5 14.8 160 257-440 56-216 (270)
86 2z62_A TOLL-like receptor 4, v 99.4 6.6E-12 2.2E-16 116.5 13.6 201 24-272 25-234 (276)
87 1p9a_G Platelet glycoprotein I 99.3 2.5E-11 8.5E-16 113.5 16.5 197 173-407 8-205 (290)
88 4glp_A Monocyte differentiatio 99.3 2.2E-11 7.7E-16 114.9 13.1 84 317-408 222-305 (310)
89 3rfs_A Internalin B, repeat mo 99.3 1E-10 3.4E-15 108.3 16.1 192 146-380 40-231 (272)
90 3m19_A Variable lymphocyte rec 99.3 1E-10 3.5E-15 106.8 15.1 86 316-408 104-190 (251)
91 4glp_A Monocyte differentiatio 99.2 3.7E-11 1.3E-15 113.4 10.6 184 235-440 117-305 (310)
92 4ezg_A Putative uncharacterize 99.2 7.9E-11 2.7E-15 103.4 11.4 152 23-211 40-191 (197)
93 2ca6_A RAN GTPase-activating p 99.2 1.6E-12 5.4E-17 126.9 -1.2 290 97-408 20-341 (386)
94 1h6t_A Internalin B; cell adhe 99.2 1.9E-10 6.5E-15 107.5 13.0 174 172-388 43-216 (291)
95 4ezg_A Putative uncharacterize 99.2 1.3E-10 4.4E-15 102.0 11.2 57 345-406 134-190 (197)
96 1h6t_A Internalin B; cell adhe 99.2 9.9E-11 3.4E-15 109.4 10.8 167 58-273 45-211 (291)
97 2ca6_A RAN GTPase-activating p 99.1 9.7E-12 3.3E-16 121.2 2.4 14 317-330 301-314 (386)
98 1m9s_A Internalin B; cell inva 99.1 1.1E-10 3.8E-15 119.9 10.0 175 18-246 34-208 (605)
99 1m9s_A Internalin B; cell inva 99.1 2.7E-10 9.4E-15 117.0 12.2 175 172-389 40-214 (605)
100 3goz_A Leucine-rich repeat-con 99.1 4.7E-12 1.6E-16 122.4 -1.9 253 138-408 13-295 (362)
101 3m19_A Variable lymphocyte rec 99.1 8.2E-10 2.8E-14 100.8 11.6 175 27-246 14-190 (251)
102 3goz_A Leucine-rich repeat-con 99.0 8.7E-11 3E-15 113.5 2.3 66 319-386 225-298 (362)
103 1xeu_A Internalin C; cellular 99.0 1.1E-09 3.6E-14 100.8 9.4 173 19-246 11-183 (263)
104 2o6s_A Variable lymphocyte rec 99.0 3.9E-09 1.3E-13 93.2 12.8 131 233-380 26-157 (208)
105 3e6j_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 95.5 11.7 85 316-407 85-169 (229)
106 2xot_A Amphoterin-induced prot 99.0 3.1E-09 1.1E-13 102.4 12.2 155 235-408 39-200 (361)
107 3cvr_A Invasion plasmid antige 98.9 9.3E-09 3.2E-13 104.6 15.3 180 147-381 59-240 (571)
108 3cvr_A Invasion plasmid antige 98.9 3.7E-09 1.3E-13 107.5 12.1 182 28-273 60-241 (571)
109 1xeu_A Internalin C; cellular 98.9 6.7E-09 2.3E-13 95.4 11.6 172 173-388 17-188 (263)
110 2o6s_A Variable lymphocyte rec 98.9 1.7E-08 5.9E-13 89.1 13.7 123 235-380 52-174 (208)
111 2v9t_B SLIT homolog 2 protein 98.9 1.2E-08 4.1E-13 91.0 12.6 129 235-406 32-161 (220)
112 2v9t_B SLIT homolog 2 protein 98.9 3.3E-08 1.1E-12 88.2 14.1 148 178-381 14-162 (220)
113 3sb4_A Hypothetical leucine ri 98.9 2.6E-08 9E-13 94.6 14.3 78 317-403 248-327 (329)
114 2v70_A SLIT-2, SLIT homolog 2 98.8 4.5E-08 1.5E-12 87.3 14.0 130 235-380 32-162 (220)
115 2ell_A Acidic leucine-rich nuc 98.8 3.4E-09 1.2E-13 90.2 6.3 56 235-299 24-81 (168)
116 2ell_A Acidic leucine-rich nuc 98.8 2.4E-09 8.3E-14 91.2 5.2 63 146-212 94-158 (168)
117 2v70_A SLIT-2, SLIT homolog 2 98.8 3E-08 1E-12 88.4 12.3 132 261-408 31-164 (220)
118 3e6j_A Variable lymphocyte rec 98.8 1.7E-08 5.8E-13 90.7 9.9 148 29-212 21-170 (229)
119 1a9n_A U2A', U2A'; complex (nu 98.8 7.8E-09 2.7E-13 88.8 6.9 90 315-410 60-153 (176)
120 2xot_A Amphoterin-induced prot 98.8 1.6E-08 5.6E-13 97.4 9.6 129 60-211 40-173 (361)
121 2je0_A Acidic leucine-rich nuc 98.8 3.5E-09 1.2E-13 88.2 4.3 61 144-210 85-149 (149)
122 3sb4_A Hypothetical leucine ri 98.8 3.8E-08 1.3E-12 93.5 11.7 106 174-299 201-307 (329)
123 2je0_A Acidic leucine-rich nuc 98.8 3.9E-09 1.3E-13 87.9 4.1 126 235-405 17-148 (149)
124 1dce_A Protein (RAB geranylger 98.7 4.3E-09 1.5E-13 107.4 3.8 200 24-269 346-567 (567)
125 1a9n_A U2A', U2A'; complex (nu 98.7 1.2E-08 4.1E-13 87.6 4.8 136 21-213 13-152 (176)
126 2wfh_A SLIT homolog 2 protein 98.6 2.7E-07 9.3E-12 80.3 11.3 84 316-406 51-135 (193)
127 1w8a_A SLIT protein; signaling 98.6 2.8E-07 9.6E-12 80.2 11.0 105 263-380 30-135 (192)
128 2o6r_A Variable lymphocyte rec 98.6 3.6E-07 1.2E-11 78.2 11.3 86 316-408 49-135 (177)
129 4fs7_A Uncharacterized protein 98.6 7.5E-06 2.6E-10 79.6 21.4 145 235-406 230-375 (394)
130 4fdw_A Leucine rich hypothetic 98.6 9.6E-06 3.3E-10 78.9 21.9 219 148-406 158-379 (401)
131 4fdw_A Leucine rich hypothetic 98.5 9.2E-06 3.1E-10 79.0 19.9 262 58-380 112-379 (401)
132 1w8a_A SLIT protein; signaling 98.5 3.7E-07 1.3E-11 79.4 8.6 76 30-118 11-87 (192)
133 1dce_A Protein (RAB geranylger 98.4 1.7E-07 5.9E-12 95.5 6.5 159 23-208 405-567 (567)
134 2o6r_A Variable lymphocyte rec 98.4 2E-06 6.9E-11 73.5 10.2 61 316-381 73-134 (177)
135 2wfh_A SLIT homolog 2 protein 98.3 9.4E-07 3.2E-11 76.9 7.6 123 30-186 13-137 (193)
136 4b8c_D Glucose-repressible alc 98.3 6.7E-07 2.3E-11 94.1 7.3 113 255-385 217-329 (727)
137 1ds9_A Outer arm dynein; leuci 98.3 1.1E-08 3.7E-13 89.6 -5.4 57 58-119 47-103 (198)
138 3e4g_A ATP synthase subunit S, 98.3 8E-08 2.7E-12 81.4 -0.6 88 320-412 62-154 (176)
139 3g39_A Variable lymphocyte rec 98.3 3.5E-06 1.2E-10 71.6 9.7 80 319-405 30-110 (170)
140 4b8c_D Glucose-repressible alc 98.3 5.3E-07 1.8E-11 94.8 5.0 82 23-117 220-301 (727)
141 1ds9_A Outer arm dynein; leuci 98.2 2.6E-08 8.7E-13 87.3 -5.5 83 22-119 43-125 (198)
142 3e4g_A ATP synthase subunit S, 98.2 3.6E-07 1.2E-11 77.4 1.8 94 176-278 62-155 (176)
143 2r9u_A Variable lymphocyte rec 98.2 5E-06 1.7E-10 70.9 8.3 60 316-380 54-114 (174)
144 2r9u_A Variable lymphocyte rec 98.1 9.8E-06 3.3E-10 69.1 9.4 83 319-408 33-116 (174)
145 4gt6_A Cell surface protein; l 98.1 0.00028 9.6E-09 68.4 20.7 82 317-408 286-368 (394)
146 4fs7_A Uncharacterized protein 98.0 0.00036 1.2E-08 67.6 19.0 145 174-379 229-374 (394)
147 2ra8_A Uncharacterized protein 98.0 6.9E-06 2.3E-10 78.6 5.6 66 317-386 250-321 (362)
148 3g39_A Variable lymphocyte rec 97.8 4.7E-05 1.6E-09 64.5 7.8 61 315-380 50-111 (170)
149 2ifg_A High affinity nerve gro 97.8 6.5E-05 2.2E-09 71.5 9.7 85 258-356 27-112 (347)
150 2ifg_A High affinity nerve gro 97.8 5.8E-05 2E-09 71.8 8.8 60 316-380 53-112 (347)
151 3un9_A NLR family member X1; l 97.6 1.6E-05 5.6E-10 76.5 2.4 36 59-95 101-136 (372)
152 2ra8_A Uncharacterized protein 97.6 9.7E-05 3.3E-09 70.6 7.6 88 26-119 106-203 (362)
153 4h09_A Hypothetical leucine ri 97.6 0.0063 2.1E-07 58.3 20.2 77 319-404 263-340 (379)
154 4gt6_A Cell surface protein; l 97.6 0.0056 1.9E-07 59.1 19.6 318 22-404 58-385 (394)
155 3un9_A NLR family member X1; l 96.9 0.00031 1.1E-08 67.5 1.9 84 26-119 100-193 (372)
156 4h09_A Hypothetical leucine ri 96.8 0.12 4E-06 49.3 19.6 80 317-405 238-318 (379)
157 1io0_A Tropomodulin; LRR prote 95.8 0.0089 3E-07 51.0 5.0 47 138-186 112-162 (185)
158 1io0_A Tropomodulin; LRR prote 95.5 0.025 8.5E-07 48.1 6.8 117 83-211 34-161 (185)
159 3rw6_A Nuclear RNA export fact 95.5 0.01 3.4E-07 53.8 4.1 89 58-156 169-260 (267)
160 3rw6_A Nuclear RNA export fact 95.2 0.0081 2.8E-07 54.4 2.7 60 317-382 168-231 (267)
161 3rfe_A Platelet glycoprotein I 83.5 1.8 6.1E-05 34.0 5.4 32 372-405 32-63 (130)
162 3rfe_A Platelet glycoprotein I 79.9 1.4 4.8E-05 34.6 3.6 34 319-356 31-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 41.6 28 0.00095 29.4 4.4 16 143-158 94-109 (197)
164 2lz0_A Uncharacterized protein 39.0 34 0.0012 25.1 4.1 45 331-380 7-52 (100)
165 1pgv_A TMD-1, tropomodulin TMD 29.3 42 0.0014 28.3 3.5 89 58-157 40-136 (197)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.7e-23 Score=218.00 Aligned_cols=338 Identities=11% Similarity=0.090 Sum_probs=172.8
Q ss_pred cccccccceeeccccccccc------------------cccccccc--cCCCcceEeecCCCCccccccCccCCCCcceE
Q 012933 55 RIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCPNMKTFSHGILSTPKLHKV 114 (453)
Q Consensus 55 ~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 114 (453)
...+++|++|+++++. +++ ++.. .. .+++|++|++++|.....+|..+..+++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3347888888888854 666 4444 45 78888888888887677788888888888888
Q ss_pred EeccccccccccccCCccchhHH-HHHHhhcC------CCCccEEEEeeCCCCccccc--CCCCCcCccCCCcEEEecCC
Q 012933 115 QVTEKEEGELHHWEGNKLNSTIQ-KCYEEMIG------FRDMEYLQLSYFPHLKEIWH--GQALPVSFFNNLARLVVDDC 185 (453)
Q Consensus 115 ~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~------~~~L~~L~l~~~~~l~~~~~--~~~l~~~~l~~L~~L~l~~c 185 (453)
+++++..+ .. .++..+.. +++|++|+++++. +..++. .. ..+++|++|+++++
T Consensus 279 ~Ls~n~~l-------------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N 340 (636)
T 4eco_A 279 NVACNRGI-------------SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYN 340 (636)
T ss_dssp ECTTCTTS-------------CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSC
T ss_pred ECcCCCCC-------------ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCC
Confidence 88865311 11 23333322 2556666665554 333333 11 23555555555554
Q ss_pred CCccccCchhHHhhcCCCcEEEeccCccchhhhcc-ccc--------------ccccCCCCC-CCCccceeeeccCCCcc
Q 012933 186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL-EEQ--------------NADKEHRGP-LFPKLYGLRLIDLPKLK 249 (453)
Q Consensus 186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~-~~~--------------~~~~~~~~~-~~~~L~~L~L~~~~~l~ 249 (453)
. +++.+| .+..+++|+.|+++++. +..++.. ... ..+...... .+++|++|++.++.--.
T Consensus 341 ~-l~g~ip--~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 Q-LEGKLP--AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp C-CEEECC--CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred c-Cccchh--hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 3 332223 24445555555555432 2222110 000 000000000 01245555555443211
Q ss_pred eeccCCCccc-------CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccc-cccccccCCCc
Q 012933 250 RFCNFTGNII-------ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQP-LFDEKVSFPRL 321 (453)
Q Consensus 250 ~~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~l~~L 321 (453)
. .+..+. .+++|+.|+++++. ++.++... +..+++|+.|+++++.--.++..... ..+....+++|
T Consensus 417 ~---~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 417 V---DGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp T---TTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred c---chhhhcccccccccCCCCCEEECcCCc-cCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence 1 112222 44566666666543 23333321 33455666666666532211110000 00001122377
Q ss_pred CEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC------cccccccCCCcccc
Q 012933 322 RWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC------HGLINLLTFSTSES 395 (453)
Q Consensus 322 ~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c------~~l~~l~~~~~~~~ 395 (453)
++|++++| .++.++...+. ..+++|+.|++++ +.++.+|..+..+++|++|+++++ .-...+|. ....
T Consensus 491 ~~L~Ls~N-~l~~lp~~~~~--~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~ 564 (636)
T 4eco_A 491 TSIDLRFN-KLTKLSDDFRA--TTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITL 564 (636)
T ss_dssp CEEECCSS-CCCBCCGGGST--TTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGG
T ss_pred cEEECcCC-cCCccChhhhh--ccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH--HHhc
Confidence 77777776 55555543310 1677777777777 456667777777777777777432 22233332 3456
Q ss_pred cCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 396 LVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 396 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
+++|++|++++|.- +++ +.. ..+.|+.|+++++|
T Consensus 565 l~~L~~L~Ls~N~l-~~i--------p~~--~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKV--------NEK--ITPNISVLDIKDNP 598 (636)
T ss_dssp CSSCCEEECCSSCC-CBC--------CSC--CCTTCCEEECCSCT
T ss_pred CCCCCEEECCCCcC-Ccc--------CHh--HhCcCCEEECcCCC
Confidence 77777777777763 222 222 22788888888874
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.9e-22 Score=209.23 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=49.2
Q ss_pred cCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc-c
Q 012933 23 VGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK-T 100 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~ 100 (453)
++.+++|++|++++| .++.+ |..+.. +++|++|+++++ .++..+... ...+++|++|++++|.-.. .
T Consensus 76 ~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--------l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 76 WHGLHHLSNLILTGN-PIQSFSPGSFSG--------LTSLENLVAVET-KLASLESFP-IGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp TTTCTTCCEEECTTC-CCCCCCTTSSTT--------CTTCCEEECTTS-CCCCSSSSC-CTTCTTCCEEECCSSCCCCCC
T ss_pred hhchhhcCEeECCCC-cccccChhhcCC--------cccCCEEEccCC-ccccccccc-cCCCCCCCEEeCCCCccccee
Confidence 444555555555554 34433 333333 666666666663 243333221 4567777777777764222 4
Q ss_pred cccCccCCCCcceEEeccc
Q 012933 101 FSHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 101 ~~~~~~~~~~L~~L~l~~~ 119 (453)
+|..+..+++|++|+++++
T Consensus 145 lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCGGGGTCTTCCEEECCSS
T ss_pred chHhHhhcCCCCEEEccCC
Confidence 5667777888888887764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=8.2e-24 Score=225.22 Aligned_cols=343 Identities=16% Similarity=0.006 Sum_probs=193.4
Q ss_pred ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
..+++.+++|++|++++|...+.+|. ++. +++|++|+++++. +++.... ....+++|++|++++|....
T Consensus 193 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~--------l~~L~~L~Ls~n~-l~~~~~~-~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 193 DVDVSRCVNLEFLDVSSNNFSTGIPF-LGD--------CSALQHLDISGNK-LSGDFSR-AISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp CCBCTTCTTCCEEECCSSCCCSCCCB-CTT--------CCSCCEEECCSSC-CCSCHHH-HTTTCSSCCEEECCSSCCEE
T ss_pred cCCcccCCcCCEEECcCCcCCCCCcc-ccc--------CCCCCEEECcCCc-CCCcccH-HHhcCCCCCEEECCCCcccC
Confidence 34446677777777777643333333 444 6777777777643 3322111 14456677777777664333
Q ss_pred ccccCccCCCCcceEEecccc--------------ccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933 100 TFSHGILSTPKLHKVQVTEKE--------------EGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (453)
.+|.. .+++|++|+++++. ++..+++.++ .....++..+..+++|++|+++++.-...++.
T Consensus 262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS---EEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC---cCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 33332 56666666666532 1111111111 01112333444556666666655542112222
Q ss_pred CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcC-CCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeecc
Q 012933 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLID 244 (453)
Q Consensus 166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 244 (453)
.. ...+++|++|++++|. +++..|.. +..++ +|+.|+++++.-...++. ......+++|++|++.+
T Consensus 337 ~~---l~~l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~--------~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 337 DT---LLKMRGLKVLDLSFNE-FSGELPES-LTNLSASLLTLDLSSNNFSGPILP--------NLCQNPKNTLQELYLQN 403 (768)
T ss_dssp HH---HTTCTTCCEEECCSSE-EEECCCTT-HHHHTTTCSEEECCSSEEEEECCT--------TTTCSTTCCCCEEECCS
T ss_pred HH---HhcCCCCCEEeCcCCc-cCccccHH-HHhhhcCCcEEEccCCCcCCCcCh--------hhhhcccCCccEEECCC
Confidence 10 1235566666666553 33233333 34444 666666665432211111 01111136788888887
Q ss_pred CCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE
Q 012933 245 LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL 324 (453)
Q Consensus 245 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L 324 (453)
+.-... .+..+..+++|+.|++++|..-...|.. +..+++|+.|+++++.-.. ...+.++.+++|++|
T Consensus 404 n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 404 NGFTGK---IPPTLSNCSELVSLHLSFNYLSGTIPSS---LGSLSKLRDLKLWLNMLEG------EIPQELMYVKTLETL 471 (768)
T ss_dssp SEEEEE---CCGGGGGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEE
T ss_pred Cccccc---cCHHHhcCCCCCEEECcCCcccCcccHH---HhcCCCCCEEECCCCcccC------cCCHHHcCCCCceEE
Confidence 753323 3467788889999999887533333433 6778888999888874221 011235577889999
Q ss_pred eecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933 325 ELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI 404 (453)
Q Consensus 325 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 404 (453)
++++| .++......+ ..+++|++|++++|.-...+|.++..+++|++|++++|.-...+|. ....+++|++|++
T Consensus 472 ~L~~N-~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L 545 (768)
T 3rgz_A 472 ILDFN-DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDL 545 (768)
T ss_dssp ECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEEC
T ss_pred EecCC-cccCcCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEEC
Confidence 99888 4443333333 7888999999998664447777888889999999988644335543 4567888999988
Q ss_pred cccch
Q 012933 405 ADCKM 409 (453)
Q Consensus 405 ~~C~~ 409 (453)
++|+-
T Consensus 546 s~N~l 550 (768)
T 3rgz_A 546 NTNLF 550 (768)
T ss_dssp CSSEE
T ss_pred CCCcc
Confidence 87763
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=6.8e-23 Score=217.95 Aligned_cols=63 Identities=21% Similarity=0.372 Sum_probs=46.3
Q ss_pred cccccccceeeccccccccc------------------cccccccc--cCCCcceEeecCCCCccccccCccCCCCcceE
Q 012933 55 RIAFSKLKVLILDYLPTLTS------------------FCLENYTL--EFPSLERVSMTHCPNMKTFSHGILSTPKLHKV 114 (453)
Q Consensus 55 ~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 114 (453)
...+++|++|+++++. +++ +|.. .. .+++|++|++++|.....+|..+..+++|++|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~--l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE--LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh--hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 3347888888888743 655 4443 44 78888888888887677788778888888888
Q ss_pred Eecccc
Q 012933 115 QVTEKE 120 (453)
Q Consensus 115 ~l~~~~ 120 (453)
+++++.
T Consensus 521 ~Ls~N~ 526 (876)
T 4ecn_A 521 NIACNR 526 (876)
T ss_dssp ECTTCT
T ss_pred ECcCCC
Confidence 888764
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.6e-23 Score=222.97 Aligned_cols=357 Identities=15% Similarity=0.055 Sum_probs=209.9
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
++.+++|++|++++|. +...+.. . .+++|++|+++++. ++..... ...+++|++|++++|.-...+|
T Consensus 174 ~~~l~~L~~L~Ls~n~-l~~~~~~-~--------~l~~L~~L~Ls~n~-l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK-ISGDVDV-S--------RCVNLEFLDVSSNN-FSTGIPF--LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp TTCCTTCCEEECCSSE-EESCCBC-T--------TCTTCCEEECCSSC-CCSCCCB--CTTCCSCCEEECCSSCCCSCHH
T ss_pred hccCCCCCEEECCCCc-ccccCCc-c--------cCCcCCEEECcCCc-CCCCCcc--cccCCCCCEEECcCCcCCCccc
Confidence 6789999999999985 4433221 2 38999999999954 4443333 5689999999999986544778
Q ss_pred cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l 182 (453)
..+..+++|++|++++|.-... ++. ..+++|++|+++++.-...++... ...+++|++|++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~--------------~~~--~~l~~L~~L~L~~n~l~~~ip~~~---~~~~~~L~~L~L 301 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGP--------------IPP--LPLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDL 301 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEES--------------CCC--CCCTTCCEEECCSSEEEESCCCCS---CTTCTTCSEEEC
T ss_pred HHHhcCCCCCEEECCCCcccCc--------------cCc--cccCCCCEEECcCCccCCccCHHH---HhhcCcCCEEEC
Confidence 8888999999999997632110 000 134555555555554111222211 011355555555
Q ss_pred cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcc--cccc--------------cccCCCCCCCCccceeeeccCC
Q 012933 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHL--EEQN--------------ADKEHRGPLFPKLYGLRLIDLP 246 (453)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~--~~~~--------------~~~~~~~~~~~~L~~L~L~~~~ 246 (453)
++|. +++..|. .+..+++|++|+++++.-...++.. .... ..........++|++|++.++.
T Consensus 302 s~n~-l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 302 SGNH-FYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CSSE-EEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred cCCc-CCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 5542 2222222 2444555555555544221111110 0000 0000000111256666665543
Q ss_pred CcceeccCCCcccC--CCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEE
Q 012933 247 KLKRFCNFTGNIIE--LPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWL 324 (453)
Q Consensus 247 ~l~~~~~~~~~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L 324 (453)
--..+ +..+.. +++|+.|++++|.....+|.. +..+++|+.|+++++.--. ...+.++.+++|++|
T Consensus 380 l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 380 FSGPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDL 447 (768)
T ss_dssp EEEEC---CTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEE
T ss_pred cCCCc---ChhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEE
Confidence 22111 223333 667777777776543334433 6667788888887763211 011235677889999
Q ss_pred eecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc-cccCCCcccccCCcceEE
Q 012933 325 ELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI-NLLTFSTSESLVNLGRMM 403 (453)
Q Consensus 325 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~ 403 (453)
++++|. +.......+ ..+++|++|++++|.-...+|..+..+++|++|++++|. ++ .+|. ....+++|++|+
T Consensus 448 ~L~~n~-l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~--~~~~l~~L~~L~ 520 (768)
T 3rgz_A 448 KLWLNM-LEGEIPQEL---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPK--WIGRLENLAILK 520 (768)
T ss_dssp ECCSSC-CCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCEEE
T ss_pred ECCCCc-ccCcCCHHH---cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCCh--HHhcCCCCCEEE
Confidence 998884 443322333 688999999999965444677778889999999998854 44 4443 456788999999
Q ss_pred EcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 404 IADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 404 i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
+++|... +..+..+..++.|++|++++++
T Consensus 521 L~~N~l~--------~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 521 LSNNSFS--------GNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSSCCE--------EECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCccc--------CcCCHHHcCCCCCCEEECCCCc
Confidence 9988743 2334556678888888888664
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.6e-21 Score=202.24 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=42.7
Q ss_pred ccCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT 100 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 100 (453)
.++.+++|++|++++| .+..+ |..+.. +++|++|+++++ .++..... ....+++|++|++++|. ++.
T Consensus 52 ~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~ 119 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRC-QIYWIHEDTFQS--------QHRLDTLVLTAN-PLIFMAET-ALSGPKALKHLFFIQTG-ISS 119 (606)
T ss_dssp TSTTCTTCSEEECTTC-CCCEECTTTTTT--------CTTCCEEECTTC-CCSEECTT-TTSSCTTCCEEECTTSC-CSC
T ss_pred HhccCccceEEECCCC-ccceeChhhccC--------ccccCeeeCCCC-cccccChh-hhcccccccEeeccccC-ccc
Confidence 3566677777777775 34444 333333 566666666653 23333221 13345555555555543 333
Q ss_pred c-ccCccCCCCcceEEecc
Q 012933 101 F-SHGILSTPKLHKVQVTE 118 (453)
Q Consensus 101 ~-~~~~~~~~~L~~L~l~~ 118 (453)
+ +..+..+++|++|++++
T Consensus 120 l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp GGGSCCTTCTTCCEEECCS
T ss_pred CCcchhccCCcccEEECCC
Confidence 2 33444455555555554
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=3.5e-23 Score=215.62 Aligned_cols=328 Identities=13% Similarity=0.100 Sum_probs=225.4
Q ss_pred cCcccccceEEeccccchhh------------------hhcccc--cccccccccccccceeeccccccccccccccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEE------------------IIRHVG--EEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~------------------i~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 82 (453)
++.+++|++|+|+++. +.. +|..++ + +++|++|+++++.-...++.. ..
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--------l~~L~~L~L~~n~l~~~~p~~--l~ 270 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDN--------LKDLTDVEVYNCPNLTKLPTF--LK 270 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--------CTTCCEEEEECCTTCSSCCTT--TT
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcc--------cCCCCEEEecCCcCCccChHH--Hh
Confidence 7889999999999985 665 887766 6 899999999987655555533 66
Q ss_pred cCCCcceEeecCCCCcc--ccccCccCC------CCcceEEeccccccccccccCCccchhHHHHHH--hhcCCCCccEE
Q 012933 83 EFPSLERVSMTHCPNMK--TFSHGILST------PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRDMEYL 152 (453)
Q Consensus 83 ~l~~L~~L~l~~c~~l~--~~~~~~~~~------~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L 152 (453)
.+++|++|++++|..++ .+|..+..+ ++|++|+++++. +..++. .+..+++|++|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~---------------l~~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN---------------LKTFPVETSLQKMKKLGML 335 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC---------------CSSCCCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc---------------CCccCchhhhccCCCCCEE
Confidence 88999999999986455 477766665 889999998642 224454 56677888888
Q ss_pred EEeeCCCCc-ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCC-CcEEEeccCccchhhhccccc-------
Q 012933 153 QLSYFPHLK-EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNN-LQWLEVRNCDSIEEVLHLEEQ------- 223 (453)
Q Consensus 153 ~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~------- 223 (453)
+++++. +. .++ .. ..+++|++|+++++. ++. +|.. +..+++ |+.|+++++. +..++..-+.
T Consensus 336 ~L~~N~-l~g~ip-~~----~~l~~L~~L~L~~N~-l~~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 336 ECLYNQ-LEGKLP-AF----GSEIKLASLNLAYNQ-ITE-IPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp ECCSCC-CEEECC-CC----EEEEEESEEECCSSE-EEE-CCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEE
T ss_pred eCcCCc-Cccchh-hh----CCCCCCCEEECCCCc-ccc-ccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccC
Confidence 888776 43 544 22 446777777777753 433 2433 666777 7777777653 3333221000
Q ss_pred ------ccccCCCCC----------CCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCccccc
Q 012933 224 ------NADKEHRGP----------LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVT 287 (453)
Q Consensus 224 ------~~~~~~~~~----------~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 287 (453)
+.+...... ..++|++|++.++. ++.++ ...+..+++|+.|+++++. +..++... +..
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~--~~~ 479 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFP--KELFSTGSPLSSINLMGNM-LTEIPKNS--LKD 479 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCC--THHHHTTCCCSEEECCSSC-CSBCCSSS--SEE
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCC--HHHHccCCCCCEEECCCCC-CCCcCHHH--hcc
Confidence 001111101 11589999998874 44432 2234569999999999965 44666543 332
Q ss_pred C-------CCcccccccccccccccccccccccccc--cCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc--
Q 012933 288 T-------DNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE-- 356 (453)
Q Consensus 288 l-------~~L~~L~l~~~~~~~~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~-- 356 (453)
. ++|+.|+++++.--.+ .+... .+++|++|++++| .++.++... ..+++|+.|++++
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~l-------p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKL-------SDDFRATTLPYLVGIDLSYN-SFSKFPTQP----LNSSTLKGFGIRNQR 547 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBC-------CGGGSTTTCTTCCEEECCSS-CCSSCCCGG----GGCSSCCEEECCSCB
T ss_pred ccccccccCCccEEECcCCcCCcc-------ChhhhhccCCCcCEEECCCC-CCCCcChhh----hcCCCCCEEECCCCc
Confidence 2 3899999998743221 12333 7899999999999 676676554 6899999999954
Q ss_pred ----CCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933 357 ----CSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM 409 (453)
Q Consensus 357 ----c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 409 (453)
+.-.+.+|..+..+++|++|++++ +.++.+|.. +. ++|++|++++++-
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNEK-IT---PNISVLDIKDNPN 599 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCCBCCSC-CC---TTCCEEECCSCTT
T ss_pred ccccCcccccChHHHhcCCCCCEEECCC-CcCCccCHh-Hh---CcCCEEECcCCCC
Confidence 444567888899999999999988 456888764 33 8999999999974
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.4e-21 Score=198.98 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=111.3
Q ss_pred cccCcccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
.+.+-.+++++|+++++ .++.+ |..+.+ +++|++|+++++ .++..... ....+++|++|++++|.-..
T Consensus 27 iP~~l~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 27 IPGTLPNSTECLEFSFN-VLPTIQNTTFSR--------LINLTFLDLTRC-QIYWIHED-TFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CCTTSCTTCCEEECTTC-CCSEECTTTSTT--------CTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCCCSE
T ss_pred CcCCCCCcCcEEEccCC-ccCcCChhHhcc--------CccceEEECCCC-ccceeChh-hccCccccCeeeCCCCcccc
Confidence 34444678999999997 67777 444554 999999999995 45554333 25679999999999986444
Q ss_pred ccccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 178 (453)
..|..+..+++|++|+++++.- ..+ +..+..+++|++|+++++. +..+.... + ..+++|+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i---------------~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~ 156 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGI---------------SSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-G--FPTEKLK 156 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCC---------------SCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-T--CCCTTCC
T ss_pred cChhhhcccccccEeeccccCc---------------ccCCcchhccCCcccEEECCCCc-ccccCccc-c--cCCcccC
Confidence 5577788899999999996521 111 2335667899999999886 44432221 1 1278999
Q ss_pred EEEecCCCCccccCchhHHhhcCCCc--EEEeccC
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQ--WLEVRNC 211 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~--~L~l~~~ 211 (453)
+|+++++. ++.. +...+..+++|+ .|+++++
T Consensus 157 ~L~L~~n~-l~~~-~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 157 VLDFQNNA-IHYL-SKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EEECCSSC-CCEE-CHHHHHTTTTCCSEEEECTTC
T ss_pred EEEcccCc-cccc-ChhhhhhhcccceeEEecCCC
Confidence 99999864 4444 344577888888 7777665
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.8e-21 Score=195.42 Aligned_cols=149 Identities=14% Similarity=0.239 Sum_probs=84.3
Q ss_pred ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
+..+..+++|++|++++| .++.++. +.. +++|++|+++++ .++..+. ...+++|++|++++| .++
T Consensus 61 l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~--------l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNN-QLTDITP-LKN--------LTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp CTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCC
T ss_pred CcchhhhcCCCEEECCCC-ccCCchh-hhc--------cccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCC
Confidence 444566777777777776 4666654 444 777777777764 3444332 456777788887776 355
Q ss_pred ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~ 179 (453)
.++. +..+++|++|+++++.- ..++ .+..+++|++|.+++.. ..... ...+++|++
T Consensus 126 ~~~~-~~~l~~L~~L~l~~n~l---------------~~~~-~~~~l~~L~~L~l~~~~--~~~~~-----~~~l~~L~~ 181 (466)
T 1o6v_A 126 DIDP-LKNLTNLNRLELSSNTI---------------SDIS-ALSGLTSLQQLSFGNQV--TDLKP-----LANLTTLER 181 (466)
T ss_dssp CCGG-GTTCTTCSEEEEEEEEE---------------CCCG-GGTTCTTCSEEEEEESC--CCCGG-----GTTCTTCCE
T ss_pred CChH-HcCCCCCCEEECCCCcc---------------CCCh-hhccCCcccEeecCCcc--cCchh-----hccCCCCCE
Confidence 5543 56677777777776421 1111 23445666666664321 11111 133566666
Q ss_pred EEecCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (453)
|+++++. ++.. ..+..+++|++|+++++
T Consensus 182 L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 182 LDISSNK-VSDI---SVLAKLTNLESLIATNN 209 (466)
T ss_dssp EECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred EECcCCc-CCCC---hhhccCCCCCEEEecCC
Confidence 6666653 3322 12555666666666654
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=8.8e-22 Score=189.86 Aligned_cols=308 Identities=16% Similarity=0.166 Sum_probs=194.9
Q ss_pred cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (453)
Q Consensus 19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 98 (453)
....+..+++|++|+++++ .+..++. +.. +++|++|+++++ .++.++. ...+++|++|++++| .+
T Consensus 36 ~~~~~~~l~~L~~L~l~~~-~i~~~~~-~~~--------~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i 100 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGE-KVASIQG-IEY--------LTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KI 100 (347)
T ss_dssp SEECHHHHTTCSEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CC
T ss_pred CcccchhcccccEEEEeCC-ccccchh-hhh--------cCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cc
Confidence 3445567888999999986 5666653 333 888999999885 4555543 457889999999887 46
Q ss_pred cccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933 99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (453)
Q Consensus 99 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 178 (453)
+.++ .+..+++|++|+++++.- ..++. +..+++|++|+++++.....++. . ..+++|+
T Consensus 101 ~~~~-~~~~l~~L~~L~l~~n~i---------------~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~----~~l~~L~ 158 (347)
T 4fmz_A 101 TDIS-ALQNLTNLRELYLNEDNI---------------SDISP-LANLTKMYSLNLGANHNLSDLSP-L----SNMTGLN 158 (347)
T ss_dssp CCCG-GGTTCTTCSEEECTTSCC---------------CCCGG-GTTCTTCCEEECTTCTTCCCCGG-G----TTCTTCC
T ss_pred cCch-HHcCCCcCCEEECcCCcc---------------cCchh-hccCCceeEEECCCCCCcccccc-h----hhCCCCc
Confidence 6664 467788888888886521 11111 45678888888888765554332 1 4578888
Q ss_pred EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI 258 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 258 (453)
+|++++|. +....+ +..+++|+.|+++++. +.+++... .+++|++|.+.++. ++.+ ..+
T Consensus 159 ~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~-----------~l~~L~~L~l~~n~-l~~~----~~~ 217 (347)
T 4fmz_A 159 YLTVTESK-VKDVTP---IANLTDLYSLSLNYNQ-IEDISPLA-----------SLTSLHYFTAYVNQ-ITDI----TPV 217 (347)
T ss_dssp EEECCSSC-CCCCGG---GGGCTTCSEEECTTSC-CCCCGGGG-----------GCTTCCEEECCSSC-CCCC----GGG
T ss_pred EEEecCCC-cCCchh---hccCCCCCEEEccCCc-cccccccc-----------CCCccceeecccCC-CCCC----chh
Confidence 88888875 333322 6678888888888763 33332211 22778888887753 3332 236
Q ss_pred cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceeccc
Q 012933 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE 338 (453)
Q Consensus 259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 338 (453)
..+++|+.|++++|. ++..+. +..+++|+.|+++++.--. ++....+++|++|++++| .++.++
T Consensus 218 ~~~~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~l~~n-~l~~~~-- 281 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNK-ITDLSP----LANLSQLTWLEIGTNQISD--------INAVKDLTKLKMLNVGSN-QISDIS-- 281 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSS-CCCCCG--
T ss_pred hcCCcCCEEEccCCc-cCCCcc----hhcCCCCCEEECCCCccCC--------ChhHhcCCCcCEEEccCC-ccCCCh--
Confidence 777888888888764 333322 4456677777777652211 123456677777777777 455542
Q ss_pred CCcccccCCCccceeeccCCCccc-cCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 339 NDESNKAFANLESLEISECSKLQK-LVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
.+ ..+++|+.|++++|. ++. .+..+..+++|++|++++|+ +++++. ...+++|++|++++|+
T Consensus 282 ~~---~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 VL---NNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GG---GGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred hh---cCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 22 567777777777754 333 33345567777777777643 555543 3456777777777665
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=7.7e-21 Score=190.15 Aligned_cols=337 Identities=13% Similarity=0.072 Sum_probs=212.2
Q ss_pred cccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933 25 IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 103 (453)
..++|++|+++++ .++.+ |..+.+ +++|++|+++++.-...++. .....+++|++|++++|.-....|.
T Consensus 28 l~~~l~~L~Ls~n-~i~~~~~~~~~~--------l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLN-SIAELNETSFSR--------LQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTSS--------CTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCCccCEEEecCC-ccCcCChhHhcc--------CccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCccChh
Confidence 3578999999997 56666 444444 89999999998543223322 2356789999999999864344577
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHHh--hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE--MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV 181 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~ 181 (453)
.+..+++|++|++++|.- ....+.. +..+++|++|+++++. +..+.... + ...+++|++|+
T Consensus 98 ~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~-~~~l~~L~~L~ 160 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNL--------------DGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPAS-F-FLNMRRFHVLD 160 (455)
T ss_dssp TTTTCTTCCEEECTTSCC--------------BTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCG-G-GGGCTTCCEEE
T ss_pred hccCcccCCEEeCCCCCC--------------CccccCcccccCcccCCEEECCCCc-cCccCccc-c-cCCCCcccEEe
Confidence 788899999999996521 1112222 5667899999998886 43332211 0 14578999999
Q ss_pred ecCCCCccccCchhHHhhc--CCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC--------------
Q 012933 182 VDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL-------------- 245 (453)
Q Consensus 182 l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-------------- 245 (453)
++++. ++...+.. +..+ .+|+.|+++++. +..+................ ++|++|++.++
T Consensus 161 L~~n~-l~~~~~~~-l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 161 LTFNK-VKSICEED-LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CTTCC-BSCCCTTT-SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred CCCCc-ccccChhh-hhccccccccccccccCc-ccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhccc
Confidence 98864 44443322 4433 455555555532 22211100000000000011 34555555443
Q ss_pred -------------CCccee---------ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccc
Q 012933 246 -------------PKLKRF---------CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL 303 (453)
Q Consensus 246 -------------~~l~~~---------~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 303 (453)
...... ..........++|+.|+++++... ..+... +..+++|+.|+++++.--.
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSV--FSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTT--TTTCTTCCEEECTTSCCCE
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhh--cccCCCCCEEECCCCcccc
Confidence 211110 000001113468999999887544 433333 7788899999998874322
Q ss_pred ccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCc
Q 012933 304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCH 382 (453)
Q Consensus 304 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~ 382 (453)
. ....+..+++|++|++++| .++.+....+ ..+++|++|++++| .++.+ |..+..+++|++|++++ +
T Consensus 314 ~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N 381 (455)
T 3v47_A 314 I------DDNAFWGLTHLLKLNLSQN-FLGSIDSRMF---ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-N 381 (455)
T ss_dssp E------CTTTTTTCTTCCEEECCSS-CCCEECGGGG---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-S
T ss_pred c------ChhHhcCcccCCEEECCCC-ccCCcChhHh---cCcccCCEEECCCC-cccccChhhccccccccEEECCC-C
Confidence 1 1123557899999999999 6788876666 78999999999995 56666 56788899999999988 6
Q ss_pred ccccccCCCcccccCCcceEEEcccc
Q 012933 383 GLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 383 ~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
+++.++.. ....+++|++|++++++
T Consensus 382 ~l~~~~~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 QLKSVPDG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ccccCCHh-HhccCCcccEEEccCCC
Confidence 78887764 45688999999997543
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1e-20 Score=198.86 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=47.8
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC--CccccCCCCCCCCCCCEEecccCcccccccCCCccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS--KLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~--~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
.+++|++|++++| .+..+....| ..+++|+.|+++++. .+..+|..+..+++|++|++++ ++++.++.. ...
T Consensus 428 ~l~~L~~L~Ls~n-~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~-~~~ 501 (680)
T 1ziw_A 428 GLENIFEIYLSYN-KYLQLTRNSF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDD-MLE 501 (680)
T ss_dssp TCTTCCEEECCSC-SEEECCTTTT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTT-TTT
T ss_pred CcccccEEecCCC-CcceeChhhh---hcCcccccchhccccccccccCCcccccCCCCCEEECCC-CCCCcCChh-hhc
Confidence 4555666666555 3444444444 455566666665532 1234455566667777777765 456655542 334
Q ss_pred ccCCcceEEEcccc
Q 012933 395 SLVNLGRMMIADCK 408 (453)
Q Consensus 395 ~l~~L~~L~i~~C~ 408 (453)
.+++|++|+++++.
T Consensus 502 ~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 502 GLEKLEILDLQHNN 515 (680)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccccCEEeCCCCC
Confidence 56667777766654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.8e-21 Score=198.85 Aligned_cols=239 Identities=18% Similarity=0.150 Sum_probs=126.6
Q ss_pred ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc----------ccccccCCCCCCCCccceeee
Q 012933 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE----------EQNADKEHRGPLFPKLYGLRL 242 (453)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~L~~L~L 242 (453)
.+++|++|+++++. ++.+ +.. +..+ +|++|+++++. +..++... +...........+++|++|++
T Consensus 280 ~l~~L~~L~l~~~~-l~~l-~~~-~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IERV-KDF-SYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp GGTTCSEEEEESCE-ECSC-CBC-CSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred CcCcccEEEecCcc-chhh-hhh-hccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 36777777777653 3332 222 3444 66666666653 22221100 000000000012355666666
Q ss_pred ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (453)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~ 322 (453)
.++. ++.....+..+..+++|+.|++++|. +..++.. +..+++|+.|+++++...... ....+..+++|+
T Consensus 355 ~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~ 424 (570)
T 2z63_A 355 SRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN---FLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLRNLI 424 (570)
T ss_dssp CSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE---EETCTTCCEEECTTSEEESCT-----TSCTTTTCTTCC
T ss_pred cCCc-cCccccccccccccCccCEEECCCCc-ccccccc---ccccCCCCEEEccCCcccccc-----chhhhhcCCCCC
Confidence 5543 22211112345556666666666653 2333322 445566777777665321100 011234667888
Q ss_pred EEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR 401 (453)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 401 (453)
+|++++| .+.......+ ..+++|++|++++|.-. ..+|..+..+++|++|++++| +++.++.. ....+++|++
T Consensus 425 ~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~ 498 (570)
T 2z63_A 425 YLDISHT-HTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQV 498 (570)
T ss_dssp EEECTTS-CCEECCTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCE
T ss_pred EEeCcCC-cccccchhhh---hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCE
Confidence 8888877 4555555555 67788888888885432 246777777788888888774 45555332 3456778888
Q ss_pred EEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 402 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
|++++|. ++. ..+..+..++.|+.++++++|
T Consensus 499 L~l~~n~-l~~-------~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASNQ-LKS-------VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSSC-CSC-------CCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCc-CCC-------CCHHHhhcccCCcEEEecCCc
Confidence 8887774 211 112234566777777777654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.8e-21 Score=198.09 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=67.7
Q ss_pred ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933 258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK 337 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 337 (453)
+..+++|+.|++++| +++.+|.. +..+++|+.|+++++.--.+ +. ..+++|++|++++| .++.++
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp~~---~~~~~~L~~L~Ls~N~l~~l--------~~-~~~~~L~~L~Ls~N-~l~~~~- 447 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMPDS---CQWPEKMRFLNLSSTGIRVV--------KT-CIPQTLEVLDVSNN-NLDSFS- 447 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCCSC---CCCCTTCCEEECTTSCCSCC--------CT-TSCTTCSEEECCSS-CCSCCC-
T ss_pred hhcCCCCCEEECCCC-CCccCChh---hcccccccEEECCCCCcccc--------cc-hhcCCceEEECCCC-Chhhhc-
Confidence 444555555555554 23333332 33444555555555421110 00 11245666666665 343332
Q ss_pred cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
..+++|++|+++++ .++.+|. ...+++|++|++++ ++++.++.. ....+++|++|++++++
T Consensus 448 ------~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 448 ------LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISR-NQLKSVPDG-IFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ------CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCS-SCCCCCCTT-GGGGCTTCCEEECCSSC
T ss_pred ------ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCC-CccCCcCHH-HHhcCcccCEEEecCCC
Confidence 46677777777773 5666665 34567777777766 456665542 34566777777776544
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-20 Score=195.96 Aligned_cols=156 Identities=18% Similarity=0.120 Sum_probs=93.0
Q ss_pred CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933 260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN 339 (453)
Q Consensus 260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 339 (453)
.+++|+.|+++++......+ +..+++|+.|+++++.--.. .........+++|++|++++| .++.++ ..
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~ 394 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFK-----KVALPSLSYLDLSRNALSFS----GCCSYSDLGTNSLRHLDLSFN-GAIIMS-AN 394 (606)
T ss_dssp CCSSCCEEEEESCSSCEECC-----CCCCTTCCEEECCSSCEEEE----EECCHHHHCCSCCCEEECCSC-SEEEEC-CC
T ss_pred CCCccceeeccCCcCccchh-----hccCCCCCEEECcCCccCCC----cchhhhhccCCcccEeECCCC-ccccch-hh
Confidence 55555556555554443331 33455666666665521110 000122346677888888777 466666 33
Q ss_pred CcccccCCCccceeeccCCCccccC--CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933 340 DESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417 (453)
Q Consensus 340 ~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~ 417 (453)
+ ..+++|+.|++++|. ++.++ ..+..+++|++|++++|. +...... ....+++|++|++++|..-..
T Consensus 395 ~---~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~----- 463 (606)
T 3vq2_A 395 F---MGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDN----- 463 (606)
T ss_dssp C---TTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGG-----
T ss_pred c---cCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCc-----
Confidence 3 677888888888853 44443 356778888888887754 4443332 355678888888888763211
Q ss_pred cCCccCCCceeccccchhhhhh
Q 012933 418 VGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 418 ~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
..+..+..++.|+.|+++++
T Consensus 464 --~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 464 --TLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp --EECSCCTTCTTCCEEECTTS
T ss_pred --chHHhhccCCCCCEEECCCC
Confidence 12344567889999988887
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.5e-21 Score=206.01 Aligned_cols=323 Identities=12% Similarity=0.085 Sum_probs=186.8
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccc--cccc-----cccccCCCcceEeecCCCC
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTS--FCLE-----NYTLEFPSLERVSMTHCPN 97 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~-----~~~~~l~~L~~L~l~~c~~ 97 (453)
.+++|++|+|++|...+.+|..+.+ +++|++|+++++..++. ++.. .....+++|+.|++++|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~--------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYD--------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGG--------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred cCCCCCEEECcCCCCCccChHHHhC--------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 6677777777776556666665555 67777777776443443 2221 012345577777777753
Q ss_pred cccccc--CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC
Q 012933 98 MKTFSH--GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN 175 (453)
Q Consensus 98 l~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~ 175 (453)
+..+|. .+..+++|+.|+++++. +..++ .+..+++|++|+++++. +..++... ..++
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~---------------l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l----~~l~ 618 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNK---------------VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDF----CAFT 618 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSC---------------CCBCC-CCCTTSEESEEECCSSC-CSCCCTTS----CEEC
T ss_pred CCccCChhhhhcCCCCCEEECCCCC---------------cccch-hhcCCCcceEEECcCCc-cccchHHH----hhcc
Confidence 556666 66667777777776532 11223 44556677777777665 33444332 3456
Q ss_pred C-CcEEEecCCCCccccCchhHHhhcC--CCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933 176 N-LARLVVDDCTNMSSAIPANLLRCLN--NLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (453)
Q Consensus 176 ~-L~~L~l~~c~~l~~~~~~~~l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 252 (453)
+ |++|+++++. ++.+ |. .+..++ +|+.|+++++.-...++... ........++|++|++.++. ++.+
T Consensus 619 ~~L~~L~Ls~N~-L~~l-p~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-----~~l~~~~~~~L~~L~Ls~N~-L~~l- 688 (876)
T 4ecn_A 619 DQVEGLGFSHNK-LKYI-PN-IFNAKSVYVMGSVDFSYNKIGSEGRNIS-----CSMDDYKGINASTVTLSYNE-IQKF- 688 (876)
T ss_dssp TTCCEEECCSSC-CCSC-CS-CCCTTCSSCEEEEECCSSCTTTTSSSCS-----SCTTTCCCCCEEEEECCSSC-CCSC-
T ss_pred ccCCEEECcCCC-CCcC-ch-hhhccccCCCCEEECcCCcCCCccccch-----hhhccccCCCcCEEEccCCc-CCcc-
Confidence 6 7777777654 4433 32 233333 37777777653222111100 00000011477888877764 3333
Q ss_pred cCCCc-ccCCCCccEEeeecCCCCceeccCCcccc-------cCCCcccccccccccccccccccccccccc--cCCCcC
Q 012933 253 NFTGN-IIELPELQHLTIQNCPDMETFISNSVVHV-------TTDNKEPQKLTSEENFLLAHQVQPLFDEKV--SFPRLR 322 (453)
Q Consensus 253 ~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~--~l~~L~ 322 (453)
+.. +..+++|+.|+++++ .+..+|... +. .+++|+.|++++|.--.+ .+.+. .+++|+
T Consensus 689 --p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~--~~~~~~~l~nl~~L~~L~Ls~N~L~~l-------p~~l~~~~l~~L~ 756 (876)
T 4ecn_A 689 --PTELFATGSPISTIILSNN-LMTSIPENS--LKPKDGNYKNTYLLTTIDLRFNKLTSL-------SDDFRATTLPYLS 756 (876)
T ss_dssp --CHHHHHTTCCCSEEECCSC-CCSCCCTTS--SSCTTSCCTTGGGCCEEECCSSCCCCC-------CGGGSTTTCTTCC
T ss_pred --CHHHHccCCCCCEEECCCC-cCCccChHH--hccccccccccCCccEEECCCCCCccc-------hHHhhhccCCCcC
Confidence 223 346788888888875 344555432 22 223788888877632211 12233 678888
Q ss_pred EEeecCCCCcceecccCCcccccCCCccceeecc------CCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISE------CSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (453)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~------c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (453)
.|++++| .++.++... ..+++|+.|++++ +.-...+|..+.++++|++|++++| .+..+|.. +.
T Consensus 757 ~L~Ls~N-~L~~lp~~l----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~--- 826 (876)
T 4ecn_A 757 NMDVSYN-CFSSFPTQP----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LT--- 826 (876)
T ss_dssp EEECCSS-CCSSCCCGG----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC---
T ss_pred EEEeCCC-CCCccchhh----hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hc---
Confidence 8888887 566665443 6788888888866 3334567777778888888888774 45777663 32
Q ss_pred CCcceEEEcccch
Q 012933 397 VNLGRMMIADCKM 409 (453)
Q Consensus 397 ~~L~~L~i~~C~~ 409 (453)
++|+.|++++|+.
T Consensus 827 ~~L~~LdLs~N~l 839 (876)
T 4ecn_A 827 PQLYILDIADNPN 839 (876)
T ss_dssp SSSCEEECCSCTT
T ss_pred CCCCEEECCCCCC
Confidence 6788888888863
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.4e-20 Score=191.15 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 369 HLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 369 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
.+++|++|++++ ++++.+|. ...+++|++|+++++. ++ +..+..+..++.|+.++++++|
T Consensus 449 ~l~~L~~L~Ls~-N~l~~ip~---~~~l~~L~~L~Ls~N~-l~-------~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 FLPRLQELYISR-NKLKTLPD---ASLFPVLLVMKISRNQ-LK-------SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTCCEEECCS-SCCSSCCC---GGGCTTCCEEECCSSC-CC-------CCCTTGGGGCTTCCEEECCSSC
T ss_pred cCChhcEEECCC-CccCcCCC---cccCccCCEEecCCCc-cC-------CcCHHHHhcCcccCEEEecCCC
Confidence 345555555544 24444443 1234555555555553 11 1112234567788888887775
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.5e-20 Score=179.65 Aligned_cols=298 Identities=13% Similarity=0.167 Sum_probs=219.9
Q ss_pred hhhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC
Q 012933 7 YFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS 86 (453)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 86 (453)
-.+++.++ ....+..++.+++|++|++++| .++.++. +.. +++|++|+++++ .++.++ ....+++
T Consensus 47 ~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~--------l~~L~~L~L~~n-~i~~~~---~~~~l~~ 111 (347)
T 4fmz_A 47 TKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISP-LSN--------LVKLTNLYIGTN-KITDIS---ALQNLTN 111 (347)
T ss_dssp SEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTT--------CTTCCEEECCSS-CCCCCG---GGTTCTT
T ss_pred cEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchh-hhc--------CCcCCEEEccCC-cccCch---HHcCCCc
Confidence 34445533 2344566788999999999998 6777766 554 899999999995 566553 2568999
Q ss_pred cceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccC
Q 012933 87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHG 166 (453)
Q Consensus 87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 166 (453)
|++|++++|. +..++. +..+++|++|++++|..+... ..+..+++|++|+++++. +..+..
T Consensus 112 L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~---------------~~~~~l~~L~~L~l~~~~-~~~~~~- 172 (347)
T 4fmz_A 112 LRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDL---------------SPLSNMTGLNYLTVTESK-VKDVTP- 172 (347)
T ss_dssp CSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCC---------------GGGTTCTTCCEEECCSSC-CCCCGG-
T ss_pred CCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccc---------------cchhhCCCCcEEEecCCC-cCCchh-
Confidence 9999999975 666655 778999999999987543221 124568999999999987 443332
Q ss_pred CCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933 167 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (453)
Q Consensus 167 ~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 246 (453)
...+++|++|++++|. ++...+ +..+++|+.++++++ .+..+... . .+++|++|++.++.
T Consensus 173 ----~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~----------~-~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 173 ----IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITPV----------A-NMTRLNSLKIGNNK 232 (347)
T ss_dssp ----GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGGG----------G-GCTTCCEEECCSSC
T ss_pred ----hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCchh----------h-cCCcCCEEEccCCc
Confidence 2458999999999975 444422 778999999999986 34433221 1 23899999999874
Q ss_pred CcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEee
Q 012933 247 KLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLEL 326 (453)
Q Consensus 247 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l 326 (453)
++.+ ..+..+++|+.|++++|. ++.++ . +..+++|+.|+++++.--. ++....+++|++|++
T Consensus 233 -l~~~----~~~~~l~~L~~L~l~~n~-l~~~~--~--~~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 233 -ITDL----SPLANLSQLTWLEIGTNQ-ISDIN--A--VKDLTKLKMLNVGSNQISD--------ISVLNNLSQLNSLFL 294 (347)
T ss_dssp -CCCC----GGGTTCTTCCEEECCSSC-CCCCG--G--GTTCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEEC
T ss_pred -cCCC----cchhcCCCCCEEECCCCc-cCCCh--h--HhcCCCcCEEEccCCccCC--------ChhhcCCCCCCEEEC
Confidence 4443 237889999999999974 44442 1 6678899999999873222 134567899999999
Q ss_pred cCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCc
Q 012933 327 SGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382 (453)
Q Consensus 327 ~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 382 (453)
++| .++......+ ..+++|+.|++++|+ ++.++. +..+++|++|++++++
T Consensus 295 ~~n-~l~~~~~~~l---~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNN-QLGNEDMEVI---GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSS-CCCGGGHHHH---HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCC-cCCCcChhHh---hccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 999 5666655555 789999999999965 777666 7789999999998853
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.3e-20 Score=187.37 Aligned_cols=328 Identities=14% Similarity=0.165 Sum_probs=196.2
Q ss_pred CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 103 (453)
..+++++.|+++++ .++.++. +.. +++|++|+++++ .++.++. ...+++|++|++++|. +..++.
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~-~~~--------l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~ 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDG-VEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADITP 107 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTT-GGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGG
T ss_pred hHhccccEEecCCC-CCccCcc-hhh--------hcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccChh
Confidence 44789999999997 5777764 333 899999999985 4666543 5689999999999974 666655
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD 183 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 183 (453)
+..+++|++|++++|. + ..++ .+..+++|++|+++++. +..++. ...+++|++|++.
T Consensus 108 -~~~l~~L~~L~L~~n~-l--------------~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQ-I--------------TDID-PLKNLTNLNRLELSSNT-ISDISA-----LSGLTSLQQLSFG 164 (466)
T ss_dssp -GTTCTTCCEEECCSSC-C--------------CCCG-GGTTCTTCSEEEEEEEE-ECCCGG-----GTTCTTCSEEEEE
T ss_pred -hcCCCCCCEEECCCCC-C--------------CCCh-HHcCCCCCCEEECCCCc-cCCChh-----hccCCcccEeecC
Confidence 7889999999999752 1 1111 15678999999999986 444332 1458999999997
Q ss_pred CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933 184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE 263 (453)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 263 (453)
+ .+.... .+..+++|+.|+++++. +..+.... .+++|++|++.++. ++.+ ..+..+++
T Consensus 165 ~--~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~----~~~~~l~~ 222 (466)
T 1o6v_A 165 N--QVTDLK---PLANLTTLERLDISSNK-VSDISVLA-----------KLTNLESLIATNNQ-ISDI----TPLGILTN 222 (466)
T ss_dssp E--SCCCCG---GGTTCTTCCEEECCSSC-CCCCGGGG-----------GCTTCSEEECCSSC-CCCC----GGGGGCTT
T ss_pred C--cccCch---hhccCCCCCEEECcCCc-CCCChhhc-----------cCCCCCEEEecCCc-cccc----ccccccCC
Confidence 5 333332 27889999999999874 44432211 12566666666553 2221 12444555
Q ss_pred ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc---------------cccccccccccCCCcCEEeecC
Q 012933 264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH---------------QVQPLFDEKVSFPRLRWLELSG 328 (453)
Q Consensus 264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------------~l~~~~~~~~~l~~L~~L~l~~ 328 (453)
|+.|++++|. ++.++ . +..+++|+.|+++++..-.... .+. ..+....+++|++|++++
T Consensus 223 L~~L~l~~n~-l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 223 LDELSLNGNQ-LKDIG--T--LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNE 296 (466)
T ss_dssp CCEEECCSSC-CCCCG--G--GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCS
T ss_pred CCEEECCCCC-cccch--h--hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCC
Confidence 5555555542 22221 1 3344455555555442111000 000 011133455666666666
Q ss_pred CCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 329 LHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 329 ~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
| .++.++. + ..+++|+.|++++| .++.++. +..+++|++|++++| .+++++ ....+++|++|++++|.
T Consensus 297 n-~l~~~~~--~---~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 297 N-QLEDISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp S-CCSCCGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred C-cccCchh--h---cCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence 5 3444332 2 56666666666664 3444433 455666666666653 455542 23456667777776665
Q ss_pred hhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933 409 MIEQIIQLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
-- .+.....+++|+.++++++
T Consensus 365 l~----------~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 365 IS----------DLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp CC----------BCGGGTTCTTCCEEECCCE
T ss_pred cC----------ccchhhcCCCCCEEeccCC
Confidence 21 1222556777777777665
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=8.4e-20 Score=196.28 Aligned_cols=287 Identities=13% Similarity=0.115 Sum_probs=154.4
Q ss_pred cccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc
Q 012933 25 IPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH 103 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 103 (453)
.++++++|+|+++ .++.+ +..+.. +++|++|+++++.....+... ....+++|++|++++|.-....|.
T Consensus 22 lp~~l~~LdLs~N-~i~~i~~~~~~~--------l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFN-YIRTVTASSFPF--------LEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESC-CCCEECSSSCSS--------CCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCCC-cCCccChhHCcc--------cccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHh
Confidence 5678888888886 56655 343443 788888888886444444222 245678888888888753334466
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHH--hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE--EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV 181 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~ 181 (453)
.+..+++|++|++++|.-. ..++. .+..+++|++|+++++. +..+.....+ ..+++|++|+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~--~~L~~L~~L~ 154 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLS--------------DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF--GKLNSLKSID 154 (844)
T ss_dssp SSCSCSSCCCEECTTCCCS--------------SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG--GTCSSCCEEE
T ss_pred HccCCcccCEeeCcCCCCC--------------cccccCccccccCCCCEEECCCCc-ccccccchhH--hhCCCCCEEE
Confidence 7777888888888865211 00111 13456777777777765 3322211101 3467777777
Q ss_pred ecCCCCccccCchhHHhhc--CCCcEEEeccCccchhhhc-------------cc-----cc-----------c------
Q 012933 182 VDDCTNMSSAIPANLLRCL--NNLQWLEVRNCDSIEEVLH-------------LE-----EQ-----------N------ 224 (453)
Q Consensus 182 l~~c~~l~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~-------------~~-----~~-----------~------ 224 (453)
++++. ++...+.. +..+ ++|+.|+++++.-....+. .. +. .
T Consensus 155 Ls~N~-i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 155 FSSNQ-IFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EESSC-CCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CCCCc-CCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 77653 33332222 3333 4555555544321110000 00 00 0
Q ss_pred ------------------cc-----cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccC
Q 012933 225 ------------------AD-----KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISN 281 (453)
Q Consensus 225 ------------------~~-----~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 281 (453)
.. ..+..-..++|++|++.++. +..+ .+..+..+++|+.|+++++. +...+..
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~n~-i~~~~~~ 308 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL--NSRVFETLKDLKVLNLAYNK-INKIADE 308 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE--CSCCSSSCCCCCEEEEESCC-CCEECTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc--ChhhhhcCCCCCEEECCCCc-CCCCChH
Confidence 00 00000011456667666553 3332 23456677788888887754 3444333
Q ss_pred CcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933 282 SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE 356 (453)
Q Consensus 282 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~ 356 (453)
. +..+++|+.|+++++.--.. ....+..+++|++|+++++ .+..++...| ..+++|+.|++++
T Consensus 309 ~--~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 309 A--FYGLDNLQVLNLSYNLLGEL------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTF---KFLEKLQTLDLRD 371 (844)
T ss_dssp T--TTTCSSCCEEEEESCCCSCC------CSCSCSSCTTCCEEECCSC-CCCCCCSSCS---CSCCCCCEEEEET
T ss_pred H--hcCCCCCCEEECCCCCCCcc------CHHHhcCCCCCCEEECCCC-CCCccChhhh---cCCCCCCEEECCC
Confidence 3 66677778887777632110 0123445677777777776 5666665555 5666666666666
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=182.59 Aligned_cols=301 Identities=19% Similarity=0.205 Sum_probs=164.8
Q ss_pred cccCcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
.+.+..++++.|+++++ .++.++. .+.. +++|++|+++++ .++..... ....+++|++|+++++ +++
T Consensus 26 ip~~~~~~l~~L~L~~n-~l~~~~~~~~~~--------l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~ 93 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKN-RIKTLNQDEFAS--------FPHLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSN-RLK 93 (477)
T ss_dssp CCSCCCTTCSEEECCSS-CCCEECTTTTTT--------CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCC
T ss_pred CCCCCCCCCcEEECCCC-ccceECHhHccC--------CCCCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCC-cCC
Confidence 34445678888888886 5666643 3333 788888888874 45554333 2456788888888886 466
Q ss_pred ccccC-ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933 100 TFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (453)
Q Consensus 100 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 178 (453)
.+|.. +..+++|++|+++++.-. ...+..+..+++|++|+++++. +..+.... + ..+++|+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~ 155 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIV--------------ILLDYMFQDLYNLKSLEVGDND-LVYISHRA-F--SGLNSLE 155 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEEECCTT-CCEECTTS-S--TTCTTCC
T ss_pred ccCcccccCCCCCCEEECCCCccc--------------cCChhHccccccCCEEECCCCc-cceeChhh-c--cCCCCCC
Confidence 66654 456788888888754211 1112334556778888887765 44333222 2 3467788
Q ss_pred EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcc
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNI 258 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 258 (453)
+|+++++. ++.. +...+..+++|+.|+++++. +..+... ....+ ++|++|++.++..+..++ ...
T Consensus 156 ~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~--------~~~~l-~~L~~L~l~~~~~~~~~~---~~~ 220 (477)
T 2id5_A 156 QLTLEKCN-LTSI-PTEALSHLHGLIVLRLRHLN-INAIRDY--------SFKRL-YRLKVLEISHWPYLDTMT---PNC 220 (477)
T ss_dssp EEEEESCC-CSSC-CHHHHTTCTTCCEEEEESCC-CCEECTT--------CSCSC-TTCCEEEEECCTTCCEEC---TTT
T ss_pred EEECCCCc-Cccc-ChhHhcccCCCcEEeCCCCc-CcEeChh--------hcccC-cccceeeCCCCccccccC---ccc
Confidence 88888763 4444 44457777788888777752 3322110 11112 667777777766666542 233
Q ss_pred cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceeccc
Q 012933 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKE 338 (453)
Q Consensus 259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 338 (453)
....+|+.|++++|. ++.++... +..+++|+.|+++++..-... ...+..+++|++|+++++ .++.+...
T Consensus 221 ~~~~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTAVPYLA--VRHLVYLRFLNLSYNPISTIE------GSMLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp TTTCCCSEEEEESSC-CCSCCHHH--HTTCTTCCEEECCSSCCCEEC------TTSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred ccCccccEEECcCCc-ccccCHHH--hcCccccCeeECCCCcCCccC------hhhccccccCCEEECCCC-ccceECHH
Confidence 344467777777653 33333221 344445555555544211100 011234455555555554 34444444
Q ss_pred CCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 339 NDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
.| ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus 291 ~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 291 AF---RGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TB---TTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCS
T ss_pred Hh---cCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccC
Confidence 43 4555555555555 234444432 34445555555544
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.5e-20 Score=181.64 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=222.6
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-c
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-H 103 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~ 103 (453)
.+++++.|+++++ .++.+|.... ..+++|++|+++++ .++..+.. ....+++|++|+++++. ++.++ .
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~-------~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHH-------HHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCC-chhhCChhHh-------cccccCcEEECCCC-cccccChh-hccCCCCcCEEECCCCC-CCcCCHH
Confidence 4689999999997 6888887532 13899999999984 46665443 25678999999999975 55554 4
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l 182 (453)
.+..+++|++|+++++. +..++.. ...+++|++|+++++. +..+.... + ..+++|++|++
T Consensus 112 ~~~~l~~L~~L~L~~n~---------------l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~l 172 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND---------------LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQL 172 (390)
T ss_dssp TTTTCTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--SSCTTCCEEEC
T ss_pred HhcCCCCCCEEECCCCc---------------cCcCCHHHhcCCCCCcEEECCCCc-cCccChhh-c--cCCCCCCEEEC
Confidence 56789999999999652 2233333 3568999999999986 44443322 2 45899999999
Q ss_pred cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCC
Q 012933 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP 262 (453)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~ 262 (453)
+++. ++.. + +..+++|+.|+++++ .+..+. ..++|++|++.++. ++.++ ...++
T Consensus 173 ~~n~-l~~~-~---~~~l~~L~~L~l~~n-~l~~~~--------------~~~~L~~L~l~~n~-l~~~~-----~~~~~ 226 (390)
T 3o6n_A 173 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHNS-INVVR-----GPVNV 226 (390)
T ss_dssp CSSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCSSCSEEECCSSC-CCEEE-----CCCCS
T ss_pred CCCc-CCcc-c---cccccccceeecccc-cccccC--------------CCCcceEEECCCCe-eeecc-----ccccc
Confidence 9864 4443 2 567899999999885 333321 22689999998864 45442 12357
Q ss_pred CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES 342 (453)
Q Consensus 263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 342 (453)
+|+.|+++++. ++..+ .+..+++|+.|+++++..-.. ....+..+++|++|+++++ .++.++...
T Consensus 227 ~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--- 291 (390)
T 3o6n_A 227 ELTILKLQHNN-LTDTA----WLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNN-RLVALNLYG--- 291 (390)
T ss_dssp SCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSS-CCCEEECSS---
T ss_pred cccEEECCCCC-CcccH----HHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCC-cCcccCccc---
Confidence 99999999875 33332 267788999999998743221 1123457899999999998 688876544
Q ss_pred cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
..+++|+.|++++| .++.+|..+..+++|++|++++ +.++.++ ...+++|++|++++++
T Consensus 292 -~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCC----CCTTCCCSEEECCSSC
T ss_pred -CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-CccceeC----chhhccCCEEEcCCCC
Confidence 68899999999995 6888888778889999999988 4577764 3567899999998765
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=189.81 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=92.8
Q ss_pred cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-ecc
Q 012933 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWK 337 (453)
Q Consensus 259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~ 337 (453)
..+++|+.|+++++.--...+.. +..+++|+.|+++++.--.+. .....+..+++|++|++++| .++. ++.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~ 392 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN---CGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQN-SVSYDEKK 392 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT---CCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSS-CCBCCGGG
T ss_pred hhCCcccEEEeECCccChhhhhh---hccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCC-cCCccccc
Confidence 56777888888776533323332 566778888888776322100 00012346778888888877 4555 665
Q ss_pred cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~ 417 (453)
..+ ..+++|++|++++|.-...+|..+. ++|++|++++ ++++.+|.. ...+++|++|++++|. ++.+
T Consensus 393 ~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l---- 459 (520)
T 2z7x_B 393 GDC---SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS-NKIKSIPKQ--VVKLEALQELNVASNQ-LKSV---- 459 (520)
T ss_dssp CSC---CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS-SCCCCCCGG--GGGCTTCCEEECCSSC-CCCC----
T ss_pred chh---ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC-Ccccccchh--hhcCCCCCEEECCCCc-CCcc----
Confidence 555 5677777777777543233443332 5777777766 356666542 3367777777777774 3221
Q ss_pred cCCccC-CCceeccccchhhhhhH
Q 012933 418 VGEEAK-DCNVFKELSCETMSKNE 440 (453)
Q Consensus 418 ~~~~~~-~~~~~~~l~~l~l~~~~ 440 (453)
+. .+..++.|++++++++|
T Consensus 460 ----~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 ----PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----CTTTTTTCTTCCEEECCSSC
T ss_pred ----CHHHhccCCcccEEECcCCC
Confidence 11 24456777777777664
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=191.75 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=80.3
Q ss_pred ccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc-cCCcccccCCCccceeeccCCCccccC
Q 012933 286 VTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK-ENDESNKAFANLESLEISECSKLQKLV 364 (453)
Q Consensus 286 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~ 364 (453)
..+++|+.|+++++..... .+.+..+++|++|++++| .+..... ..+ ..+++|++|++++|.-....|
T Consensus 370 ~~~~~L~~L~l~~n~l~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITM-------SSNFLGLEQLEHLDFQHS-NLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp HTCSCCCEEECCSCSEEEE-------EEEEETCTTCCEEECTTS-EEESCTTSCTT---TTCTTCCEEECTTSCCEECCT
T ss_pred cccCccCEEECCCCccccc-------cccccccCCCCEEEccCC-ccccccchhhh---hcCCCCCEEeCcCCcccccch
Confidence 3445555555555422111 112445677777777776 3443322 334 677888888888865444455
Q ss_pred CCCCCCCCCCEEecccCcccc--cccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933 365 PPSWHLENLEALEVSKCHGLI--NLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 365 ~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
..+..+++|++|++++|. +. .+|. ....+++|++|++++|.-- +..+..+..++.|++|+++++
T Consensus 439 ~~~~~l~~L~~L~l~~n~-l~~~~~p~--~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNS-FQENFLPD--IFTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTTCTTCCEEECTTCE-EGGGEECS--CCTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSS
T ss_pred hhhhcCCcCcEEECcCCc-Cccccchh--hhhcccCCCEEECCCCccc--------cCChhhhhcccCCCEEeCCCC
Confidence 567778888888887754 43 3442 4567788888888887522 112334556788888888776
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=9.2e-20 Score=191.68 Aligned_cols=237 Identities=15% Similarity=0.111 Sum_probs=155.2
Q ss_pred CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (453)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (453)
++|+.|+++++. +..+.... + ..+++|++|+++++. +....+...+..+++|+.|+++++. +..+..
T Consensus 381 ~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------- 447 (680)
T 1ziw_A 381 SPLHILNLTKNK-ISKIESDA-F--SWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTR------- 447 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCT-------
T ss_pred CcCceEECCCCC-CCeEChhh-h--hCCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeCh-------
Confidence 456666666664 33332221 2 346778888887764 3333343456777788888877764 222211
Q ss_pred cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc
Q 012933 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH 306 (453)
Q Consensus 227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 306 (453)
.... .+++|++|.+.++. ++.+...+..+..+++|+.|+++++. ++.++... +..+++|+.|+++++.--.+..
T Consensus 448 -~~~~-~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 448 -NSFA-LVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM--LEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp -TTTT-TCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCGGGGS
T ss_pred -hhhh-cCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCC-CCcCChhh--hccccccCEEeCCCCCccccch
Confidence 0111 23788888888764 22212235678889999999998864 55555544 6778899999998874322111
Q ss_pred cc-cc-cccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcc
Q 012933 307 QV-QP-LFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHG 383 (453)
Q Consensus 307 ~l-~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~ 383 (453)
.. .. ....+..+++|++|+++++ .++.++.+.| ..+++|+.|++++ +.++.+|.. +..+++|++|++++ ++
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~ 595 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVF---KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NL 595 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred hhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHc---ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-Cc
Confidence 00 00 1112457789999999998 7888888777 8899999999988 678888876 57889999999988 57
Q ss_pred cccccCCCcccccCCcceEEEcccc
Q 012933 384 LINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 384 l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
++.++...+...+++|+++++.+++
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCccChhHhcccccccCEEEccCCC
Confidence 8776553222267899999998765
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=7.6e-20 Score=186.16 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=112.3
Q ss_pred CCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933 234 FPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (453)
Q Consensus 234 ~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 313 (453)
+++|++|++.++. ++.. .+..+..+++|+.|+++++.- +.++.....+..+++|+.|+++++.-.. .+. ..
T Consensus 323 l~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~---~l~--~~ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNL-LTDT--VFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSY---DEK--KG 393 (520)
T ss_dssp CCCCCEEECCSSC-CCTT--TTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBC---CGG--GC
T ss_pred CCcccEEEeECCc-cChh--hhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCc---ccc--cc
Confidence 3788888888764 3321 246778999999999999753 3322110115678899999999874322 010 01
Q ss_pred ccccCCCcCEEeecCCCCcceecccCCcccccC-CCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCc
Q 012933 314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAF-ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFST 392 (453)
Q Consensus 314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 392 (453)
....+++|++|++++|. ++.... ..+ ++|+.|++++| .++.+|..+..+++|++|++++ ++++.+|.. .
T Consensus 394 ~~~~l~~L~~L~Ls~N~-l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~ 463 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNI-LTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDG-I 463 (520)
T ss_dssp SCCCCTTCCEEECCSSC-CCGGGG------GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTT-T
T ss_pred hhccCccCCEEECcCCC-CCcchh------hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHH-H
Confidence 24567999999999994 433222 222 79999999995 7889998888999999999988 578888764 4
Q ss_pred ccccCCcceEEEcccc
Q 012933 393 SESLVNLGRMMIADCK 408 (453)
Q Consensus 393 ~~~l~~L~~L~i~~C~ 408 (453)
...+++|++|++++++
T Consensus 464 ~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEECcCCC
Confidence 5678999999998766
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=194.52 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=62.7
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC------CCCCCCCCCCEEecccCcccccccCC
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV------PPSWHLENLEALEVSKCHGLINLLTF 390 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~------~~~~~l~~L~~L~l~~c~~l~~l~~~ 390 (453)
.+|+|++|+++++ .++.++..... ..+++|+.|+++++ .++..+ ..+..+++|++|++++ ++++.++..
T Consensus 424 ~l~~L~~L~Ls~N-~l~~~~~~~~~--~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~ 498 (844)
T 3j0a_A 424 RVPHLQILILNQN-RFSSCSGDQTP--SENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPG 498 (844)
T ss_dssp TCTTCCEEEEESC-CCCCCCSSSSS--CSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTT
T ss_pred cCCccceeeCCCC-ccccccccccc--ccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC-CcccccChh
Confidence 4667777777776 44444332111 45677777777773 343222 2356677888888876 467766553
Q ss_pred CcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933 391 STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 391 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
....+++|++|+++++. ++.+ ..... .+.|+.|+++++
T Consensus 499 -~~~~l~~L~~L~Ls~N~-l~~l-------~~~~~--~~~L~~L~Ls~N 536 (844)
T 3j0a_A 499 -VFSHLTALRGLSLNSNR-LTVL-------SHNDL--PANLEILDISRN 536 (844)
T ss_dssp -SSSSCCSCSEEEEESCC-CSSC-------CCCCC--CSCCCEEEEEEE
T ss_pred -HccchhhhheeECCCCC-CCcc-------Chhhh--hccccEEECCCC
Confidence 34567888888888774 3211 01111 167777777765
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=3e-20 Score=185.55 Aligned_cols=298 Identities=13% Similarity=0.077 Sum_probs=211.1
Q ss_pred ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
..+++.+++|++|+++++ .++.+| .+.. +++|++|+++++ .+++++ ...+++|++|++++|. ++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~--------l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~-l~ 98 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT-GIEK--------LTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNK-LT 98 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CS
T ss_pred ccChhHcCCCCEEEccCC-CcccCh-hhcc--------cCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCC-Cc
Confidence 346677999999999997 677776 4554 899999999984 476664 4578999999999975 77
Q ss_pred ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933 100 TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~ 179 (453)
.++ +..+++|++|+++++. + ..++ +..+++|++|+++++. +..++. ..+++|++
T Consensus 99 ~~~--~~~l~~L~~L~L~~N~-l--------------~~l~--~~~l~~L~~L~l~~N~-l~~l~l------~~l~~L~~ 152 (457)
T 3bz5_A 99 NLD--VTPLTKLTYLNCDTNK-L--------------TKLD--VSQNPLLTYLNCARNT-LTEIDV------SHNTQLTE 152 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSC-C--------------SCCC--CTTCTTCCEEECTTSC-CSCCCC------TTCTTCCE
T ss_pred eee--cCCCCcCCEEECCCCc-C--------------Ceec--CCCCCcCCEEECCCCc-cceecc------ccCCcCCE
Confidence 665 6789999999999752 1 1111 4567899999999886 554432 45889999
Q ss_pred EEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCccc
Q 012933 180 LVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNII 259 (453)
Q Consensus 180 L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 259 (453)
|+++++..+... + +..+++|+.|+++++ .++.++ .. .+++|++|.+.++. ++.+ .+.
T Consensus 153 L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~-----------l~-~l~~L~~L~l~~N~-l~~~-----~l~ 209 (457)
T 3bz5_A 153 LDCHLNKKITKL-D---VTPQTQLTTLDCSFN-KITELD-----------VS-QNKLLNRLNCDTNN-ITKL-----DLN 209 (457)
T ss_dssp EECTTCSCCCCC-C---CTTCTTCCEEECCSS-CCCCCC-----------CT-TCTTCCEEECCSSC-CSCC-----CCT
T ss_pred EECCCCCccccc-c---cccCCcCCEEECCCC-ccceec-----------cc-cCCCCCEEECcCCc-CCee-----ccc
Confidence 999998655543 2 667899999999886 444432 11 23889999998764 4443 367
Q ss_pred CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc----------CEEeecCC
Q 012933 260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL----------RWLELSGL 329 (453)
Q Consensus 260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L----------~~L~l~~~ 329 (453)
.+++|+.|+++++. ++.+| +..+++|+.|+++++.--.. ..+.+++| +.|++++|
T Consensus 210 ~l~~L~~L~Ls~N~-l~~ip-----~~~l~~L~~L~l~~N~l~~~---------~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 210 QNIQLTFLDCSSNK-LTEID-----VTPLTQLTYFDCSVNPLTEL---------DVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC-----CTTCTTCSEEECCSSCCSCC---------CCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred cCCCCCEEECcCCc-ccccC-----ccccCCCCEEEeeCCcCCCc---------CHHHCCCCCEEeccCCCCCEEECCCC
Confidence 78999999998864 44444 45677899999988732210 12344544 45555555
Q ss_pred CCcceecccCCcccccCCCccceeeccCCCccccCC--------CCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933 330 HKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--------PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR 401 (453)
Q Consensus 330 ~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 401 (453)
..+..++. ..+++|+.|++++|..++.+|. .+.++++|++|++++ ++++.++ ...+++|++
T Consensus 275 ~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~----l~~l~~L~~ 343 (457)
T 3bz5_A 275 TQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD----VSHNTKLKS 343 (457)
T ss_dssp TTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC----CTTCTTCSE
T ss_pred ccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc----cccCCcCcE
Confidence 54555542 5789999999999987776664 244567788888866 5676653 456789999
Q ss_pred EEEcccc
Q 012933 402 MMIADCK 408 (453)
Q Consensus 402 L~i~~C~ 408 (453)
|++++..
T Consensus 344 L~l~~N~ 350 (457)
T 3bz5_A 344 LSCVNAH 350 (457)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9887654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.4e-19 Score=177.35 Aligned_cols=305 Identities=14% Similarity=0.146 Sum_probs=226.8
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI 136 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 136 (453)
+++++.|++.+ ..++.++.. ....+++|++|+++++. ++.++. .+..+++|++|+++++. +
T Consensus 44 l~~l~~l~l~~-~~l~~l~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l 105 (390)
T 3o6n_A 44 LNNQKIVTFKN-STMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA---------------I 105 (390)
T ss_dssp GCCCSEEEEES-CEESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC---------------C
T ss_pred cCCceEEEecC-CchhhCChh-HhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC---------------C
Confidence 78999999998 446666554 24578999999999975 665554 67789999999999653 1
Q ss_pred HHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933 137 QKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (453)
Q Consensus 137 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (453)
..+ +..+..+++|++|+++++. +..++... + ..+++|++|+++++. ++.. +...+..+++|+.|+++++ .++
T Consensus 106 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 106 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSC-CCBC-CTTTTSSCTTCCEEECCSS-CCS
T ss_pred CcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH-h--cCCCCCcEEECCCCc-cCcc-ChhhccCCCCCCEEECCCC-cCC
Confidence 222 2345678999999999986 66555432 2 458999999999974 5554 3345788999999999986 344
Q ss_pred hhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccc
Q 012933 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (453)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~ 295 (453)
.+. ...+++|++|++.++. ++.+ ...++|+.|+++++. +..++.. ..++|+.|+
T Consensus 179 ~~~------------~~~l~~L~~L~l~~n~-l~~~-------~~~~~L~~L~l~~n~-l~~~~~~-----~~~~L~~L~ 232 (390)
T 3o6n_A 179 HVD------------LSLIPSLFHANVSYNL-LSTL-------AIPIAVEELDASHNS-INVVRGP-----VNVELTILK 232 (390)
T ss_dssp BCC------------GGGCTTCSEEECCSSC-CSEE-------ECCSSCSEEECCSSC-CCEEECC-----CCSSCCEEE
T ss_pred ccc------------cccccccceeeccccc-cccc-------CCCCcceEEECCCCe-eeecccc-----ccccccEEE
Confidence 331 1134899999998753 4433 335689999999864 4555443 235899999
Q ss_pred ccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCE
Q 012933 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA 375 (453)
Q Consensus 296 l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 375 (453)
++++.--. .+.+..+++|++|+++++ .++.+....+ ..+++|++|++++ +.++.++..+..+++|++
T Consensus 233 l~~n~l~~--------~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 233 LQHNNLTD--------TAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISN-NRLVALNLYGQPIPTLKV 299 (390)
T ss_dssp CCSSCCCC--------CGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECCS-SCCCEEECSSSCCTTCCE
T ss_pred CCCCCCcc--------cHHHcCCCCccEEECCCC-cCCCcChhHc---cccccCCEEECCC-CcCcccCcccCCCCCCCE
Confidence 99873322 134567899999999999 6777766666 7899999999999 578888888888999999
Q ss_pred EecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
|+++++ .++.++. ....+++|++|++++++-- . .....++.|+.|+++++|
T Consensus 300 L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~i~-~----------~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 300 LDLSHN-HLLHVER--NQPQFDRLENLYLDHNSIV-T----------LKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECCSS-CCCCCGG--GHHHHTTCSEEECCSSCCC-C----------CCCCTTCCCSEEECCSSC
T ss_pred EECCCC-cceecCc--cccccCcCCEEECCCCccc-e----------eCchhhccCCEEEcCCCC
Confidence 999885 6887765 3567899999999998732 1 125567889999998875
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=4e-19 Score=177.65 Aligned_cols=331 Identities=14% Similarity=0.122 Sum_probs=204.8
Q ss_pred hhhhhhcccchhhcc--cccCcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccc
Q 012933 6 FYFFNIHTHAHTFAY--FQVGIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL 82 (453)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 82 (453)
+-++++.++. +... ..++.+++|++|+++++.....++. .+.. +++|++|+++++. ++..... ...
T Consensus 32 l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--------l~~L~~L~Ls~n~-l~~~~~~-~~~ 100 (455)
T 3v47_A 32 VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLIILKLDYNQ-FLQLETG-AFN 100 (455)
T ss_dssp CCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--------CTTCCEEECTTCT-TCEECTT-TTT
T ss_pred cCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc--------cccCCEEeCCCCc-cCccChh-hcc
Confidence 4455565432 2223 3478899999999999854445543 2333 8899999999843 5444332 256
Q ss_pred cCCCcceEeecCCCCccccccC--ccCCCCcceEEeccccccccccccCCccchhHHHH-HHh-hcCCCCccEEEEeeCC
Q 012933 83 EFPSLERVSMTHCPNMKTFSHG--ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEE-MIGFRDMEYLQLSYFP 158 (453)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~~~ 158 (453)
.+++|++|++++|.--..++.. +..+++|++|+++++.- ..+ +.. +..+++|++|+++++.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l---------------~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI---------------KKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC---------------CSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc---------------CccCcccccCCCCcccEEeCCCCc
Confidence 7889999999987533333433 66788999999986531 111 111 4456788888887765
Q ss_pred CCcccccCCCCCc--------------------------------CccCCCcEEEecCCCCccccCchhHHhh--cCCCc
Q 012933 159 HLKEIWHGQALPV--------------------------------SFFNNLARLVVDDCTNMSSAIPANLLRC--LNNLQ 204 (453)
Q Consensus 159 ~l~~~~~~~~l~~--------------------------------~~l~~L~~L~l~~c~~l~~~~~~~~l~~--l~~L~ 204 (453)
+..+.... +.. ..+++|++|+++++. ++...+..+... .++|+
T Consensus 166 -l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 166 -VKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp -BSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEE
T ss_pred -ccccChhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhcccccccee
Confidence 33221111 100 112456666666543 222222221111 15566
Q ss_pred EEEeccCccchhhhcccccccccC--CCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCC
Q 012933 205 WLEVRNCDSIEEVLHLEEQNADKE--HRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNS 282 (453)
Q Consensus 205 ~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 282 (453)
.|+++++................. ......++|++|++.++. ++.+ .+..+..+++|+.|+++++. +...+...
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 318 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFAL--LKSVFSHFTDLEQLTLAQNE-INKIDDNA 318 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEE--CTTTTTTCTTCCEEECTTSC-CCEECTTT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cccc--chhhcccCCCCCEEECCCCc-ccccChhH
Confidence 666655432221111000000000 000012689999998875 4443 34678899999999999875 45554433
Q ss_pred cccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccc
Q 012933 283 VVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQK 362 (453)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 362 (453)
+..+++|+.|+++++.--.. ....+..+++|++|++++| .++.+....+ ..+++|++|++++ +.++.
T Consensus 319 --~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~l~~ 385 (455)
T 3v47_A 319 --FWGLTHLLKLNLSQNFLGSI------DSRMFENLDKLEVLDLSYN-HIRALGDQSF---LGLPNLKELALDT-NQLKS 385 (455)
T ss_dssp --TTTCTTCCEEECCSSCCCEE------CGGGGTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCS-SCCSC
T ss_pred --hcCcccCCEEECCCCccCCc------ChhHhcCcccCCEEECCCC-cccccChhhc---cccccccEEECCC-Ccccc
Confidence 77889999999998743221 0123457899999999999 7888877666 8999999999999 57888
Q ss_pred cCCC-CCCCCCCCEEecccCc
Q 012933 363 LVPP-SWHLENLEALEVSKCH 382 (453)
Q Consensus 363 l~~~-~~~l~~L~~L~l~~c~ 382 (453)
+|.. +..+++|++|++++++
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHhHhccCCcccEEEccCCC
Confidence 8875 5789999999998854
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.3e-19 Score=184.41 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=220.4
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH- 103 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~- 103 (453)
.+.+++.++++++ .++.+|.... ..+++|++|+++++ .++..+.. ....+++|++|++++|. ++.++.
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~-------~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHH-------HHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHHH-------ccCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCCc-CCCCCHH
Confidence 3678999999996 6888877532 23899999999984 46666543 25678999999999985 665554
Q ss_pred CccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933 104 GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (453)
Q Consensus 104 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l 182 (453)
.+..+++|++|+++++. +..++.. +..+++|++|+++++. +..++... + ..+++|++|++
T Consensus 118 ~~~~l~~L~~L~L~~n~---------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L 178 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND---------------LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQL 178 (597)
T ss_dssp TTTTCTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEEC
T ss_pred HHcCCCCCCEEEeeCCC---------------CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhh-h--hcCCcCcEEEC
Confidence 45789999999999652 2233333 3568999999999986 54444322 2 45899999999
Q ss_pred cCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCC
Q 012933 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELP 262 (453)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~ 262 (453)
+++. ++.. + +..+++|+.|+++++ .+..+. ..++|++|++.++. ++.++ . ...+
T Consensus 179 ~~N~-l~~~-~---~~~l~~L~~L~l~~n-~l~~l~--------------~~~~L~~L~ls~n~-l~~~~---~--~~~~ 232 (597)
T 3oja_B 179 SSNR-LTHV-D---LSLIPSLFHANVSYN-LLSTLA--------------IPIAVEELDASHNS-INVVR---G--PVNV 232 (597)
T ss_dssp TTSC-CSBC-C---GGGCTTCSEEECCSS-CCSEEE--------------CCTTCSEEECCSSC-CCEEE---C--SCCS
T ss_pred cCCC-CCCc-C---hhhhhhhhhhhcccC-cccccc--------------CCchhheeeccCCc-ccccc---c--ccCC
Confidence 9874 5443 3 567899999999885 333321 22679999998864 45442 1 1246
Q ss_pred CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES 342 (453)
Q Consensus 263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 342 (453)
+|+.|+++++. ++.. . .+..+++|+.|+++++.--.. ....++.+++|++|++++| .++.++...
T Consensus 233 ~L~~L~L~~n~-l~~~--~--~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--- 297 (597)
T 3oja_B 233 ELTILKLQHNN-LTDT--A--WLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNN-RLVALNLYG--- 297 (597)
T ss_dssp CCCEEECCSSC-CCCC--G--GGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECTTS-CCCEEECSS---
T ss_pred CCCEEECCCCC-CCCC--h--hhccCCCCCEEECCCCccCCC------CHHHhcCccCCCEEECCCC-CCCCCCccc---
Confidence 89999998875 3332 1 267788999999998743221 1133567899999999998 688876554
Q ss_pred cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 343 NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
..+++|+.|++++| .++.+|..+..+++|++|++++ +.+..++ ...+++|++|++++++
T Consensus 298 -~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~-N~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCC----CCTTCCCSEEECCSSC
T ss_pred -ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC-CCCCCcC----hhhcCCCCEEEeeCCC
Confidence 57899999999995 6778888888899999999988 4576664 3467899999998766
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=5.7e-19 Score=181.46 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=51.2
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccC-CCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAF-ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
.+++|++|++++|. ++... + ..+ ++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|.. ....
T Consensus 426 ~l~~L~~L~l~~n~-l~~~~---~---~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~ 495 (562)
T 3a79_B 426 WAESILVLNLSSNM-LTGSV---F---RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDG-VFDR 495 (562)
T ss_dssp CCTTCCEEECCSSC-CCGGG---G---SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTT-STTT
T ss_pred CcccCCEEECCCCC-CCcch---h---hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHH-HHhc
Confidence 44566666666652 32211 1 223 57777777774 6777777666777788888866 567776653 3456
Q ss_pred cCCcceEEEcccc
Q 012933 396 LVNLGRMMIADCK 408 (453)
Q Consensus 396 l~~L~~L~i~~C~ 408 (453)
+++|++|++++++
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 7777777777544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=5.1e-19 Score=178.07 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=230.1
Q ss_pred ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccCccCC
Q 012933 30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGILST 108 (453)
Q Consensus 30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~ 108 (453)
+.++.++ ..++.+|..+ .+++++|++++ .+++.+... ....+++|++|+++++. ++.+ |..+..+
T Consensus 14 ~~v~c~~-~~l~~ip~~~----------~~~l~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l 79 (477)
T 2id5_A 14 RAVLCHR-KRFVAVPEGI----------PTETRLLDLGK-NRIKTLNQD-EFASFPHLEELELNENI-VSAVEPGAFNNL 79 (477)
T ss_dssp TEEECCS-CCCSSCCSCC----------CTTCSEEECCS-SCCCEECTT-TTTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred CEEEeCC-CCcCcCCCCC----------CCCCcEEECCC-CccceECHh-HccCCCCCCEEECCCCc-cCEeChhhhhCC
Confidence 3455555 3677777642 34899999998 456666443 25679999999999974 6654 6778889
Q ss_pred CCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933 109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN 187 (453)
Q Consensus 109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 187 (453)
++|++|+++++. +..++. ....+++|++|+++++. +..+.... + ..+++|++|+++++.
T Consensus 80 ~~L~~L~L~~n~---------------l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n~- 139 (477)
T 2id5_A 80 FNLRTLGLRSNR---------------LKLIPLGVFTGLSNLTKLDISENK-IVILLDYM-F--QDLYNLKSLEVGDND- 139 (477)
T ss_dssp TTCCEEECCSSC---------------CCSCCTTSSTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEEECCTT-
T ss_pred ccCCEEECCCCc---------------CCccCcccccCCCCCCEEECCCCc-cccCChhH-c--cccccCCEEECCCCc-
Confidence 999999999642 222222 24568999999999987 44433222 2 458999999999864
Q ss_pred ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEE
Q 012933 188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHL 267 (453)
Q Consensus 188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L 267 (453)
++...+ ..+..+++|+.|+++++ .++.++.. ... .+++|++|++.++. +..+ .+..+..+++|+.|
T Consensus 140 l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~--------~l~-~l~~L~~L~l~~n~-i~~~--~~~~~~~l~~L~~L 205 (477)
T 2id5_A 140 LVYISH-RAFSGLNSLEQLTLEKC-NLTSIPTE--------ALS-HLHGLIVLRLRHLN-INAI--RDYSFKRLYRLKVL 205 (477)
T ss_dssp CCEECT-TSSTTCTTCCEEEEESC-CCSSCCHH--------HHT-TCTTCCEEEEESCC-CCEE--CTTCSCSCTTCCEE
T ss_pred cceeCh-hhccCCCCCCEEECCCC-cCcccChh--------Hhc-ccCCCcEEeCCCCc-CcEe--ChhhcccCccccee
Confidence 555433 44788999999999987 44443220 011 23899999998874 4444 24568889999999
Q ss_pred eeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCC
Q 012933 268 TIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFA 347 (453)
Q Consensus 268 ~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~ 347 (453)
++++|..+..++... ....+|+.|+++++.--.++ ...+..+++|++|+++++ .++.++...+ ..++
T Consensus 206 ~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~ 272 (477)
T 2id5_A 206 EISHWPYLDTMTPNC---LYGLNLTSLSITHCNLTAVP------YLAVRHLVYLRFLNLSYN-PISTIEGSML---HELL 272 (477)
T ss_dssp EEECCTTCCEECTTT---TTTCCCSEEEEESSCCCSCC------HHHHTTCTTCCEEECCSS-CCCEECTTSC---TTCT
T ss_pred eCCCCccccccCccc---ccCccccEEECcCCcccccC------HHHhcCccccCeeECCCC-cCCccChhhc---cccc
Confidence 999999888887663 33448999999987322110 112457899999999999 6888888777 8999
Q ss_pred CccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 348 NLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 348 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
+|+.|+++++ .++.+ |..+..+++|++|++++ +.++.++.. .+..+++|++|++.+++
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 273 RLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCCEEECCSS-CCSEECTTTBTTCTTCCEEECCS-SCCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred cCCEEECCCC-ccceECHHHhcCcccCCEEECCC-CcCceeCHh-HcCCCcccCEEEccCCC
Confidence 9999999995 56665 55688899999999988 578887653 45678999999998765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.2e-19 Score=182.91 Aligned_cols=305 Identities=14% Similarity=0.142 Sum_probs=226.8
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCccCCCCcceEEeccccccccccccCCccchhH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTI 136 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 136 (453)
+++++.+++.+ ..+..++.. ....+++|+.|+++++. +..++ ..+..+++|++|+++++. +
T Consensus 50 l~~l~~l~l~~-~~l~~lp~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~---------------l 111 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA---------------I 111 (597)
T ss_dssp GCCCSEEEESS-CEESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC---------------C
T ss_pred CCCceEEEeeC-CCCCCcCHH-HHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc---------------C
Confidence 67889999888 346666544 24578999999999975 66555 477889999999999653 1
Q ss_pred HHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccch
Q 012933 137 QKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIE 215 (453)
Q Consensus 137 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 215 (453)
..+ +..+..+++|++|+++++. +..++... + ..+++|++|+++++. ++...+ ..+..+++|+.|+++++ .+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECTTS-CCS
T ss_pred CCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEeeCCc-CCCCCh-hhhhcCCcCcEEECcCC-CCC
Confidence 222 2234678999999999986 66555432 2 458999999999974 555544 45888999999999986 344
Q ss_pred hhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccc
Q 012933 216 EVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQK 295 (453)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~ 295 (453)
.++ ...+++|++|++.++. ++.+ ...++|+.|+++++. +..++.. . .++|+.|+
T Consensus 185 ~~~------------~~~l~~L~~L~l~~n~-l~~l-------~~~~~L~~L~ls~n~-l~~~~~~---~--~~~L~~L~ 238 (597)
T 3oja_B 185 HVD------------LSLIPSLFHANVSYNL-LSTL-------AIPIAVEELDASHNS-INVVRGP---V--NVELTILK 238 (597)
T ss_dssp BCC------------GGGCTTCSEEECCSSC-CSEE-------ECCTTCSEEECCSSC-CCEEECS---C--CSCCCEEE
T ss_pred CcC------------hhhhhhhhhhhcccCc-cccc-------cCCchhheeeccCCc-ccccccc---c--CCCCCEEE
Confidence 331 1134899999998763 3332 345689999999865 4555543 2 24899999
Q ss_pred ccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCE
Q 012933 296 LTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEA 375 (453)
Q Consensus 296 l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 375 (453)
++++.--. .+.++.+++|++|++++| .+..+....+ ..+++|+.|++++ +.++.+|..+..+++|++
T Consensus 239 L~~n~l~~--------~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 239 LQHNNLTD--------TAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISN-NRLVALNLYGQPIPTLKV 305 (597)
T ss_dssp CCSSCCCC--------CGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECTT-SCCCEEECSSSCCTTCCE
T ss_pred CCCCCCCC--------ChhhccCCCCCEEECCCC-ccCCCCHHHh---cCccCCCEEECCC-CCCCCCCcccccCCCCcE
Confidence 99873221 234568899999999998 6777766666 7999999999999 578889888888999999
Q ss_pred EecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 376 LEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 376 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
|++++ +.+..+|. ....+++|++|++++|.-. ......++.|++|+++++|
T Consensus 306 L~Ls~-N~l~~i~~--~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 306 LDLSH-NHLLHVER--NQPQFDRLENLYLDHNSIV-----------TLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECCS-SCCCCCGG--GHHHHTTCSEEECCSSCCC-----------CCCCCTTCCCSEEECCSSC
T ss_pred EECCC-CCCCccCc--ccccCCCCCEEECCCCCCC-----------CcChhhcCCCCEEEeeCCC
Confidence 99988 46777765 3567899999999998742 1125567899999998876
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=9.2e-19 Score=174.81 Aligned_cols=300 Identities=12% Similarity=0.100 Sum_probs=209.2
Q ss_pred hhhhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCC
Q 012933 6 FYFFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP 85 (453)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 85 (453)
+-.+++.++ .+..++.++.+++|++|++++| .++.++ ++. +++|++|+++++ .++.++ ...++
T Consensus 44 L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~--------l~~L~~L~Ls~N-~l~~~~----~~~l~ 106 (457)
T 3bz5_A 44 LTSLDCHNS-SITDMTGIEKLTGLTKLICTSN-NITTLD--LSQ--------NTNLTYLACDSN-KLTNLD----VTPLT 106 (457)
T ss_dssp CCEEECCSS-CCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTT--------CTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred CCEEEccCC-CcccChhhcccCCCCEEEccCC-cCCeEc--ccc--------CCCCCEEECcCC-CCceee----cCCCC
Confidence 344555533 3334557888999999999997 577764 444 899999999984 466653 45789
Q ss_pred CcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccccc
Q 012933 86 SLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWH 165 (453)
Q Consensus 86 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (453)
+|++|+++++ +++.++ +..+++|++|+++++. + ..+ .+..+++|++|+++++..+..++.
T Consensus 107 ~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l--------------~~l--~l~~l~~L~~L~l~~n~~~~~~~~ 166 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-L--------------TEI--DVSHNTQLTELDCHLNKKITKLDV 166 (457)
T ss_dssp TCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-C--------------SCC--CCTTCTTCCEEECTTCSCCCCCCC
T ss_pred cCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-c--------------cee--ccccCCcCCEEECCCCCccccccc
Confidence 9999999997 577665 6789999999999753 1 111 245678999999999875665432
Q ss_pred CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (453)
Q Consensus 166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 245 (453)
..+++|++|+++++ .++.. + +..+++|+.|+++++ .++.+. .. .+++|++|++.++
T Consensus 167 ------~~l~~L~~L~ls~n-~l~~l-~---l~~l~~L~~L~l~~N-~l~~~~-----------l~-~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 167 ------TPQTQLTTLDCSFN-KITEL-D---VSQNKLLNRLNCDTN-NITKLD-----------LN-QNIQLTFLDCSSN 222 (457)
T ss_dssp ------TTCTTCCEEECCSS-CCCCC-C---CTTCTTCCEEECCSS-CCSCCC-----------CT-TCTTCSEEECCSS
T ss_pred ------ccCCcCCEEECCCC-cccee-c---cccCCCCCEEECcCC-cCCeec-----------cc-cCCCCCEEECcCC
Confidence 45899999999987 45554 3 667899999999886 344431 11 2389999999887
Q ss_pred CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCC-------CcccccccccccccccccccccccccccC
Q 012933 246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTD-------NKEPQKLTSEENFLLAHQVQPLFDEKVSF 318 (453)
Q Consensus 246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~l~~~~~~~~~l 318 (453)
. ++.+ + +..+++|+.|+++++. ++..+... +..+. +|+.|+++++.... .++ .+.+
T Consensus 223 ~-l~~i---p--~~~l~~L~~L~l~~N~-l~~~~~~~--l~~L~~L~l~~n~L~~L~l~~n~~~~-------~~~-~~~l 285 (457)
T 3bz5_A 223 K-LTEI---D--VTPLTQLTYFDCSVNP-LTELDVST--LSKLTTLHCIQTDLLEIDLTHNTQLI-------YFQ-AEGC 285 (457)
T ss_dssp C-CSCC---C--CTTCTTCSEEECCSSC-CSCCCCTT--CTTCCEEECTTCCCSCCCCTTCTTCC-------EEE-CTTC
T ss_pred c-cccc---C--ccccCCCCEEEeeCCc-CCCcCHHH--CCCCCEEeccCCCCCEEECCCCccCC-------ccc-cccc
Confidence 4 5554 2 7789999999999864 44444332 22222 34455555543221 111 3467
Q ss_pred CCcCEEeecCCCCcceecccCC--c--ccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccc
Q 012933 319 PRLRWLELSGLHKVQHLWKEND--E--SNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINL 387 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~--~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 387 (453)
++|+.|++++|..+..++...- . .....++|++|++++ +.++.++ +.++++|+.|++++ ++++++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBC
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCc
Confidence 9999999999988777764210 0 125667888888888 5677763 77899999999977 667664
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=7.1e-19 Score=180.73 Aligned_cols=157 Identities=9% Similarity=0.032 Sum_probs=101.4
Q ss_pred cCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-ecc
Q 012933 259 IELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-LWK 337 (453)
Q Consensus 259 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~ 337 (453)
..+++|+.|+++++.--...+.. +..+++|+.|+++++.--. +......+..+++|++|+++++ .++. ++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG---CSTLKRLQTLILQRNGLKN----FFKVALMTKNMSSLETLDVSLN-SLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT---CCSCSSCCEEECCSSCCCB----TTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred cCCCCceEEECCCCccccchhhh---hcccCCCCEEECCCCCcCC----cccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence 45677777777775433222322 5667778888877752211 0000112456788888888888 4555 666
Q ss_pred cCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhc
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQ 417 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~ 417 (453)
..+ ..+++|++|++++|.--..+|..+. ++|++|++++ ++++.+|.. ...+++|++|+++++. ++.+
T Consensus 422 ~~~---~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~-N~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l---- 488 (562)
T 3a79_B 422 RTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKD--VTHLQALQELNVASNQ-LKSV---- 488 (562)
T ss_dssp CCC---CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS-SCCCCCCTT--TTSSCCCSEEECCSSC-CCCC----
T ss_pred hhh---cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC-CcCcccChh--hcCCCCCCEEECCCCC-CCCC----
Confidence 656 6788888888888543234444332 6899999987 478887763 3378999999998875 2222
Q ss_pred cCCccC-CCceeccccchhhhhhH
Q 012933 418 VGEEAK-DCNVFKELSCETMSKNE 440 (453)
Q Consensus 418 ~~~~~~-~~~~~~~l~~l~l~~~~ 440 (453)
+. .+..++.|+.++++++|
T Consensus 489 ----~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 489 ----PDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ----CTTSTTTCTTCCCEECCSCC
T ss_pred ----CHHHHhcCCCCCEEEecCCC
Confidence 22 25678899999998875
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=5e-18 Score=169.32 Aligned_cols=333 Identities=17% Similarity=0.130 Sum_probs=171.8
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccc-------------cceeeccccccccccccccccccCCCcce
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSK-------------LKVLILDYLPTLTSFCLENYTLEFPSLER 89 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 89 (453)
++.+++|++|++++|.-.+.+|..++. +++ +++|+++++. +++++. ..++|++
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~--------l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~-----~~~~L~~ 95 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGE--------QREMAVSRLRDCLDRQAHELELNNLG-LSSLPE-----LPPHLES 95 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCC--------CHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS-----CCTTCSE
T ss_pred HhcccchhhhhccCCcccccCCccccc--------chhcchhhhhhhhccCCCEEEecCCc-cccCCC-----CcCCCCE
Confidence 677888888888887555567766554 333 3556666532 444322 1356677
Q ss_pred EeecCCCCccccccCccCCCCcceEEeccc---------cccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCC
Q 012933 90 VSMTHCPNMKTFSHGILSTPKLHKVQVTEK---------EEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHL 160 (453)
Q Consensus 90 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 160 (453)
|+++++ .++.+|. ..++|++|+++++ +++..+++.++ .+..++ ++..+++|++|+++++. +
T Consensus 96 L~l~~n-~l~~lp~---~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n----~l~~lp-~~~~l~~L~~L~l~~N~-l 165 (454)
T 1jl5_A 96 LVASCN-SLTELPE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN----QLEKLP-ELQNSSFLKIIDVDNNS-L 165 (454)
T ss_dssp EECCSS-CCSSCCC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS----CCSSCC-CCTTCTTCCEEECCSSC-C
T ss_pred EEccCC-cCCcccc---ccCCCcEEECCCCccCcccCCCCCCCEEECcCC----CCCCCc-ccCCCCCCCEEECCCCc-C
Confidence 776664 3444543 2355666666553 12222333332 112233 35667777777777765 4
Q ss_pred cccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCcccee
Q 012933 161 KEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGL 240 (453)
Q Consensus 161 ~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 240 (453)
..++. ..++|++|+++++ .++.. + .+..+++|+.|+++++. +..++. .+++|++|
T Consensus 166 ~~lp~-------~~~~L~~L~L~~n-~l~~l-~--~~~~l~~L~~L~l~~N~-l~~l~~-------------~~~~L~~L 220 (454)
T 1jl5_A 166 KKLPD-------LPPSLEFIAAGNN-QLEEL-P--ELQNLPFLTAIYADNNS-LKKLPD-------------LPLSLESI 220 (454)
T ss_dssp SCCCC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSSC-CSSCCC-------------CCTTCCEE
T ss_pred cccCC-------CcccccEEECcCC-cCCcC-c--cccCCCCCCEEECCCCc-CCcCCC-------------CcCcccEE
Confidence 43332 2357888888776 34443 3 26677888888887752 333221 22578888
Q ss_pred eeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc---ccc------c
Q 012933 241 RLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ---VQP------L 311 (453)
Q Consensus 241 ~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---l~~------~ 311 (453)
++.++ .++.++ .+..+++|+.|+++++. ++.++.. .++|+.|+++++.--.++.. +.. .
T Consensus 221 ~l~~n-~l~~lp----~~~~l~~L~~L~l~~N~-l~~l~~~------~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 221 VAGNN-ILEELP----ELQNLPFLTTIYADNNL-LKTLPDL------PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp ECCSS-CCSSCC----CCTTCTTCCEEECCSSC-CSSCCSC------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred ECcCC-cCCccc----ccCCCCCCCEEECCCCc-CCccccc------ccccCEEECCCCcccccCcccCcCCEEECcCCc
Confidence 88776 344432 36677788888887753 3333321 23666776666531111000 000 0
Q ss_pred cccc-ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCC
Q 012933 312 FDEK-VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTF 390 (453)
Q Consensus 312 ~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 390 (453)
+..+ ...++|++|+++++ .++.++ ...++|+.|++++ +.++.+|.. +++|++|++++ ++++.+|.
T Consensus 289 l~~l~~~~~~L~~L~l~~N-~l~~i~-------~~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~-N~l~~lp~- 354 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSN-EIRSLC-------DLPPSLEELNVSN-NKLIELPAL---PPRLERLIASF-NHLAEVPE- 354 (454)
T ss_dssp CSEESCCCTTCCEEECCSS-CCSEEC-------CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCSCCCC-
T ss_pred cCcccCcCCcCCEEECcCC-cCCccc-------CCcCcCCEEECCC-Ccccccccc---CCcCCEEECCC-Cccccccc-
Confidence 0000 01134555555554 333332 1225788888888 457777654 58889999977 46777654
Q ss_pred CcccccCCcceEEEcccchhHHHHhhccCCccCCCcee-------------ccccchhhhhhH
Q 012933 391 STSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVF-------------KELSCETMSKNE 440 (453)
Q Consensus 391 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~-------------~~l~~l~l~~~~ 440 (453)
.+++|++|+++++.--. + ...+..+..+ +.|++|++++++
T Consensus 355 ----~l~~L~~L~L~~N~l~~-l-----~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYNPLRE-F-----PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ----CCTTCCEEECCSSCCSS-C-----CCCCTTCCEEECCC---------------------
T ss_pred ----hhhhccEEECCCCCCCc-C-----CCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 35889999998875321 0 0112223333 788888888765
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.2e-20 Score=194.99 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=77.9
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccc-cceeeccccccccccccccccccCCCcceEeecCCCCccc---
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSK-LKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--- 100 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--- 100 (453)
.+++|++|+|++|.--...+..+.. .+++ |++|++++|..+...........+++|++|++++|. +..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAK-------ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHH-------HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCS
T ss_pred hCCCCCeEEeeccEecHHHHHHHHH-------hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcch
Confidence 4677777777776322222222221 1334 777777766543322122223356777777777764 221
Q ss_pred --cccCccCCCCcceEEeccc-----------------cccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc
Q 012933 101 --FSHGILSTPKLHKVQVTEK-----------------EEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK 161 (453)
Q Consensus 101 --~~~~~~~~~~L~~L~l~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 161 (453)
++.....+++|++|+++++ +++..+.+.++ ....++..+..+++|++|.++.+....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF----EILELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC----BGGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc----cHHHHHHHHhhhhHHHhhccccccccc
Confidence 1112234566666666432 22222233322 112233444445666666665432111
Q ss_pred ccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCc
Q 012933 162 EIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCD 212 (453)
Q Consensus 162 ~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 212 (453)
...... .....+++|+++.+.++.. ...+ ..+..+++|++|++++|.
T Consensus 258 ~~~~~~-~~l~~~~~L~~L~l~~~~~--~~l~-~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 258 GMPEKY-MNLVFPRKLCRLGLSYMGP--NEMP-ILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCTTSS-SCCCCCTTCCEEEETTCCT--TTGG-GGGGGGGGCCEEEETTCC
T ss_pred chHHHH-HHhhccccccccCccccch--hHHH-HHHhhcCCCcEEecCCCc
Confidence 100000 1113355666666555321 1112 235556666666666665
No 39
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.7e-21 Score=200.00 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCcCEEeec-----CCCCcceeccc-CCc-ccccCCCccceeeccCCCccccC-CCC-CCCCCCCEEecccCccccccc
Q 012933 318 FPRLRWLELS-----GLHKVQHLWKE-NDE-SNKAFANLESLEISECSKLQKLV-PPS-WHLENLEALEVSKCHGLINLL 388 (453)
Q Consensus 318 l~~L~~L~l~-----~~~~l~~l~~~-~~~-~~~~l~~L~~L~l~~c~~l~~l~-~~~-~~l~~L~~L~l~~c~~l~~l~ 388 (453)
+|+|+.|+++ +|..++..+.. .++ ....+++|++|++++ .+++.. ..+ ..+++|++|++++|. +++..
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~ 472 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLG 472 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHH
Confidence 5566666665 34444433211 000 014455666666644 222211 111 125566666665543 33322
Q ss_pred CCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933 389 TFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED 441 (453)
Q Consensus 389 ~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 441 (453)
...+...+++|++|++++|+.-.... ......++.|++|++++|+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~-------~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKAL-------LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHH-------HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHH-------HHHHHhCCCCCEEeeeCCCC
Confidence 11122445666666666666411110 01112356666666666654
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=2.7e-17 Score=171.09 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=81.2
Q ss_pred ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933 258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK 337 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 337 (453)
+..+++++.++++.+. +....... +..+++++.|+++++..... + ....+..+++|++|++++| .++.++.
T Consensus 441 ~~~l~~l~~l~ls~n~-l~~~~~~~--~~~~~~L~~L~Ls~N~~~~~---~--~~~~~~~l~~L~~L~Ls~N-~L~~l~~ 511 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTH-TRVAFNGI--FNGLSSLEVLKMAGNSFQEN---F--LPDIFTELRNLTFLDLSQC-QLEQLSP 511 (635)
T ss_dssp TTTCTTCCEEECTTSC-CEECCTTT--TTTCTTCCEEECTTCEEGGG---E--ECSCCTTCTTCCEEECTTS-CCCEECT
T ss_pred cccccccccccccccc-cccccccc--cccchhhhhhhhhhcccccc---c--CchhhhhccccCEEECCCC-ccCCcCh
Confidence 4445555555555432 22222222 45556667777666532220 0 0122456678888888887 6777776
Q ss_pred cCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcc
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIAD 406 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~ 406 (453)
..| ..+++|++|++++ ++++.++.. +..+++|++|++++ ++++.++... ...+ ++|++|++++
T Consensus 512 ~~f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 512 TAF---NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQE-LQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTT---TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSC-TTCCCTTCCEEECTT
T ss_pred HHH---cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHH-HHhhhCcCCEEEeeC
Confidence 666 7788888888888 467776653 66778888888876 5677665542 3344 5788888864
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2.6e-17 Score=157.41 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933 262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE 341 (453)
Q Consensus 262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 341 (453)
++|+.|+++++. ++..+... +..+++|+.|+++++.--.. ....+..+++|++|++++| .++.++...
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N-~l~~lp~~l-- 259 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAAS--LKGLNNLAKLGLSFNSISAV------DNGSLANTPHLRELHLNNN-KLVKVPGGL-- 259 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGG--GTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEEECCSS-CCSSCCTTT--
T ss_pred ccCCEEECCCCc-CCccCHHH--hcCCCCCCEEECCCCcCcee------ChhhccCCCCCCEEECCCC-cCccCChhh--
Confidence 556666665543 33332222 44555666666655421110 0012345678888888887 566666543
Q ss_pred ccccCCCccceeeccCCCccccCCCCC-------CCCCCCEEecccCccccc--ccCCCcccccCCcceEEEccc
Q 012933 342 SNKAFANLESLEISECSKLQKLVPPSW-------HLENLEALEVSKCHGLIN--LLTFSTSESLVNLGRMMIADC 407 (453)
Q Consensus 342 ~~~~l~~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~C 407 (453)
..+++|++|++++ +.++.++.... ..+.++.+++++.+ +.. ++. ..+..+.+++.++++++
T Consensus 260 --~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 --ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred --ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-ccccccCc-cccccccceeEEEeccc
Confidence 6778888888888 45776665321 24678888887743 433 222 24456778888888764
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.6e-17 Score=159.02 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=104.0
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCccccc-cCccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS-HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK 138 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 138 (453)
+++.+++++ ..++.++.. -.++|+.|+++++. ++.++ ..+..+++|++|+++++. +..
T Consensus 34 ~l~~l~~~~-~~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l~~ 92 (332)
T 2ft3_A 34 HLRVVQCSD-LGLKAVPKE----ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK---------------ISK 92 (332)
T ss_dssp ETTEEECCS-SCCSSCCSC----CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC---------------CCE
T ss_pred cCCEEECCC-CCccccCCC----CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc---------------cCc
Confidence 466666665 234444433 23567777777754 44443 355667777777777532 111
Q ss_pred H-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 139 C-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 139 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
+ +..+..+++|++|+++++. +..++... +++|++|+++++. ++.. +...+..+++|+.|+++++. ++..
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~------~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~ 162 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNH-LVEIPPNL------PSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNP-LENS 162 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSC-CCSCCSSC------CTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCC-CBGG
T ss_pred cCHhHhhCcCCCCEEECCCCc-CCccCccc------cccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCc-cccC
Confidence 1 3345567778888887765 44444433 4788999988864 4444 44457788888888888753 3221
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
... ..... . .+|++|++.++. ++.++ ..+ .++|+.|+++++. +...+... +..+++|+.|+++
T Consensus 163 ~~~------~~~~~-~-l~L~~L~l~~n~-l~~l~---~~~--~~~L~~L~l~~n~-i~~~~~~~--l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 163 GFE------PGAFD-G-LKLNYLRISEAK-LTGIP---KDL--PETLNELHLDHNK-IQAIELED--LLRYSKLYRLGLG 225 (332)
T ss_dssp GSC------TTSSC-S-CCCSCCBCCSSB-CSSCC---SSS--CSSCSCCBCCSSC-CCCCCTTS--STTCTTCSCCBCC
T ss_pred CCC------ccccc-C-CccCEEECcCCC-CCccC---ccc--cCCCCEEECCCCc-CCccCHHH--hcCCCCCCEEECC
Confidence 000 00000 1 166777776653 33331 111 2567777776643 33333222 4444455555555
Q ss_pred cc
Q 012933 298 SE 299 (453)
Q Consensus 298 ~~ 299 (453)
++
T Consensus 226 ~N 227 (332)
T 2ft3_A 226 HN 227 (332)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=7e-20 Score=189.42 Aligned_cols=353 Identities=17% Similarity=0.166 Sum_probs=180.6
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc----
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT---- 100 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~---- 100 (453)
.+++|++|++++|.--...+..+. ..+++|++|++.+|..++..........+++|++|++++|. ++.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~ 174 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIA-------KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGH 174 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHH-------HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHH-------HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchH
Confidence 466777777777642222222221 12677777777776555442222223356777777777765 322
Q ss_pred -cccCccCCCCcceEEecccc----------------ccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC-----
Q 012933 101 -FSHGILSTPKLHKVQVTEKE----------------EGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP----- 158 (453)
Q Consensus 101 -~~~~~~~~~~L~~L~l~~~~----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----- 158 (453)
++.....+++|++|+++.|. ++..+.+.++ .....++..+..+++|++|.+..+.
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~---~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT---SCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC---CcHHHHHHHHhcCCcceEcccccccCccch
Confidence 22222345667777766542 2222232222 1112233333444455555433221
Q ss_pred --------------CCccc---ccCC--CCCc--CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 159 --------------HLKEI---WHGQ--ALPV--SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 159 --------------~l~~~---~~~~--~l~~--~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
.++.+ +... .++. ..+++|++|++++|. ++......++..+++|+.|++++|..-..+
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence 11111 0000 0110 136788888888876 543323334567788888888876211111
Q ss_pred hcccccccccCCCCCCCCccceeeeccC--------CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCC
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDL--------PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTD 289 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~--------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 289 (453)
... .. .+++|++|++.+| ..+++. ........+++|+.|.+ +|..+++..... +...++
T Consensus 331 ~~l---------~~-~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~-l~~~~~ 397 (594)
T 2p1m_B 331 EVL---------AS-TCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLY-FCRQMTNAALIT-IARNRP 397 (594)
T ss_dssp HHH---------HH-HCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEE-EESCCCHHHHHH-HHHHCT
T ss_pred HHH---------HH-hCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHH-hcCCcCHHHHHH-HHhhCC
Confidence 110 00 1277888888443 333321 00011234788888844 455555433221 122467
Q ss_pred Cccccccc-----cccccccccccccccc-ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc
Q 012933 290 NKEPQKLT-----SEENFLLAHQVQPLFD-EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL 363 (453)
Q Consensus 290 ~L~~L~l~-----~~~~~~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 363 (453)
+|+.|+++ +|..+.-.. ....+. -...+++|+.|++++ .+++.....+. ..+++|+.|++++|. +++.
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEP-LDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG--TYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCC-THHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH--HHCTTCCEEEEESCC-SSHH
T ss_pred CcceeEeecccCCCcccccCCc-hhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH--HhchhccEeeccCCC-CcHH
Confidence 88888888 343333000 000000 134578899999966 34443222210 247889999998865 4321
Q ss_pred -CCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccch
Q 012933 364 -VPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKM 409 (453)
Q Consensus 364 -~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 409 (453)
+.. ...+++|++|++++|+. .+........++++|++|++++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 111 24578899999988765 4433223455678999999999875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=8.6e-17 Score=153.77 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=175.4
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK 138 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 138 (453)
+++.+++++ ..++.++.. ..++++.|+++++. ++.++. .+..+++|++|+++++. +..
T Consensus 32 ~l~~l~~~~-~~l~~lp~~----~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~---------------l~~ 90 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKVPKD----LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK---------------ISK 90 (330)
T ss_dssp ETTEEECTT-SCCCSCCCS----CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC---------------CCC
T ss_pred CCeEEEecC-CCccccCcc----CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc---------------CCe
Confidence 455555554 224444332 12556666666653 444433 34556666666666431 111
Q ss_pred H-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 139 C-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 139 ~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
+ +..+..+++|++|+++++. +..++... +++|++|+++++. ++.. +...+..+++|+.|+++++. +...
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~------~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~ 160 (330)
T 1xku_A 91 ISPGAFAPLVKLERLYLSKNQ-LKELPEKM------PKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNP-LKSS 160 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSC-CSBCCSSC------CTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSC-CCGG
T ss_pred eCHHHhcCCCCCCEEECCCCc-CCccChhh------cccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCc-CCcc
Confidence 1 2233445666666666654 44433322 4677777777653 4333 33445666666666665542 1110
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
...+..+..+++|+.|+++++. ++.++.. .. ++|+.|+++
T Consensus 161 ----------------------------------~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~---~~--~~L~~L~l~ 200 (330)
T 1xku_A 161 ----------------------------------GIENGAFQGMKKLSYIRIADTN-ITTIPQG---LP--PSLTELHLD 200 (330)
T ss_dssp ----------------------------------GBCTTGGGGCTTCCEEECCSSC-CCSCCSS---CC--TTCSEEECT
T ss_pred ----------------------------------CcChhhccCCCCcCEEECCCCc-cccCCcc---cc--ccCCEEECC
Confidence 0112445667788888887754 4444443 22 589999999
Q ss_pred ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEe
Q 012933 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALE 377 (453)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 377 (453)
++..-.. ....+..+++|++|+++++ .++.++...+ ..+++|++|++++| .++.+|..+..+++|++|+
T Consensus 201 ~n~l~~~------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 201 GNKITKV------DAASLKGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVY 269 (330)
T ss_dssp TSCCCEE------CTGGGTTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEE
T ss_pred CCcCCcc------CHHHhcCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEE
Confidence 8742221 1123567899999999998 6888877666 78999999999995 7889999999999999999
Q ss_pred cccCcccccccCCCccc-----ccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhh
Q 012933 378 VSKCHGLINLLTFSTSE-----SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 378 l~~c~~l~~l~~~~~~~-----~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
+++ +.++.++...+.. ..+.++.+++.+.+.-. . ...+.....++.++.++++++
T Consensus 270 l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~-~-----~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 270 LHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-W-----EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG-G-----GSCGGGGTTCCCGGGEEC---
T ss_pred CCC-CcCCccChhhcCCcccccccccccceEeecCcccc-c-----ccCccccccccceeEEEeccc
Confidence 987 5788876643321 24788999998887321 0 011233445677788887765
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=9.9e-18 Score=160.47 Aligned_cols=290 Identities=11% Similarity=0.134 Sum_probs=186.0
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccC
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG 104 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~ 104 (453)
..+++.++++++ .++.+|..+ .+++++|+++++ .++.++.. ....+++|++|++++|. ++.+ |..
T Consensus 32 ~c~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~ 97 (332)
T 2ft3_A 32 HCHLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNN-DISELRKD-DFKGLQHLYALVLVNNK-ISKIHEKA 97 (332)
T ss_dssp EEETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECGGG
T ss_pred cccCCEEECCCC-CccccCCCC----------CCCCeEEECCCC-cCCccCHh-HhhCCCCCcEEECCCCc-cCccCHhH
Confidence 357999999997 688888642 458999999984 46665443 25679999999999975 6654 677
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD 184 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 184 (453)
+..+++|++|+++++. +..++..+ +++|++|+++++. +..++... + ..+++|++|++++
T Consensus 98 ~~~l~~L~~L~L~~n~---------------l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~-~--~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH---------------LVEIPPNL--PSSLVELRIHDNR-IRKVPKGV-F--SGLRNMNCIEMGG 156 (332)
T ss_dssp STTCTTCCEEECCSSC---------------CCSCCSSC--CTTCCEEECCSSC-CCCCCSGG-G--SSCSSCCEEECCS
T ss_pred hhCcCCCCEEECCCCc---------------CCccCccc--cccCCEEECCCCc-cCccCHhH-h--CCCccCCEEECCC
Confidence 8889999999999652 12222222 2789999999986 55544332 2 4589999999998
Q ss_pred CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCc
Q 012933 185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPEL 264 (453)
Q Consensus 185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L 264 (453)
+.--........+..+ +|+.|+++++. ++.++. ..+++|++|++.++. ++.+ .+..+..+++|
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~------------~~~~~L~~L~l~~n~-i~~~--~~~~l~~l~~L 219 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK------------DLPETLNELHLDHNK-IQAI--ELEDLLRYSKL 219 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS------------SSCSSCSCCBCCSSC-CCCC--CTTSSTTCTTC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCC-CCccCc------------cccCCCCEEECCCCc-CCcc--CHHHhcCCCCC
Confidence 7532111223335556 89999998863 444322 234789999998864 4443 23567889999
Q ss_pred cEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccc
Q 012933 265 QHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNK 344 (453)
Q Consensus 265 ~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 344 (453)
+.|+++++. +..++... +. .+++|++|++++| .++.++... .
T Consensus 220 ~~L~L~~N~-l~~~~~~~--~~------------------------------~l~~L~~L~L~~N-~l~~lp~~l----~ 261 (332)
T 2ft3_A 220 YRLGLGHNQ-IRMIENGS--LS------------------------------FLPTLRELHLDNN-KLSRVPAGL----P 261 (332)
T ss_dssp SCCBCCSSC-CCCCCTTG--GG------------------------------GCTTCCEEECCSS-CCCBCCTTG----G
T ss_pred CEEECCCCc-CCcCChhH--hh------------------------------CCCCCCEEECCCC-cCeecChhh----h
Confidence 999999864 33333321 23 3456666666666 455555432 5
Q ss_pred cCCCccceeeccCCCccccCCC-CC------CCCCCCEEecccCcccc--cccCCCcccccCCcceEEEcccc
Q 012933 345 AFANLESLEISECSKLQKLVPP-SW------HLENLEALEVSKCHGLI--NLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 345 ~l~~L~~L~l~~c~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
.+++|+.|++++ +.++.++.. +. ..++|++|++++++ +. .++. ..+..+++|+.++++++.
T Consensus 262 ~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCc-ccccccchhhhhhccccc
Confidence 666677777776 345555542 11 14567777777644 33 2222 244567777777777664
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=5.4e-21 Score=197.71 Aligned_cols=396 Identities=12% Similarity=0.042 Sum_probs=197.9
Q ss_pred CcccccceEEeccccchhh---hhcccccc----cccccccccccceeeccccccccccccccccccCCC-cceEeecCC
Q 012933 24 GIPSSLVNLNVSRCDKIEE---IIRHVGEE----AKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-LERVSMTHC 95 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~---i~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~c 95 (453)
..+++|++|++++|..+.. +|...+.. .......+++|++|+++++ .++..........++. |++|++.+|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCC
Confidence 4578899999999876542 22222210 0112235899999999986 3443322211222555 999999999
Q ss_pred CCccc--cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC--c
Q 012933 96 PNMKT--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP--V 171 (453)
Q Consensus 96 ~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~ 171 (453)
..+.. ++.....+++|++|++++|.- .+. ....+......+++|++|+++++. +..+.... ++ .
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~------~~~----~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~-l~~~~ 216 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSF------SEK----DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKD-LETIA 216 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEE------ECC----CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHH-HHHHH
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccc------cCc----chhHHHHHHhcCCCccEEEeeccC-CCccCHHH-HHHHH
Confidence 75442 222234689999999998731 110 011122233456888888887665 22110000 10 1
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccc----------------hhhhccc-ccccccCCCCCCC
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSI----------------EEVLHLE-EQNADKEHRGPLF 234 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l----------------~~~~~~~-~~~~~~~~~~~~~ 234 (453)
..+++|++|++++|. +... + ..+..+++|+.|++++.... +.+.... ....+......+
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~- 292 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA- 292 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG-
T ss_pred hhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc-
Confidence 346788888888864 3332 3 45777788888887642111 0000000 000111112223
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccc----------cccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS----------EENFLL 304 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~----------~~~~~~ 304 (453)
++|++|++.+|. ++.. .....+..+++|+.|++.++ +.+.... .+...+++|++|++++ |..+..
T Consensus 293 ~~L~~L~Ls~~~-l~~~-~~~~~~~~~~~L~~L~L~~~--~~~~~l~-~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETE-DHCTLIQKCPNLEVLETRNV--IGDRGLE-VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGCCEEEETTCC-CCHH-HHHHHHTTCTTCCEEEEEGG--GHHHHHH-HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred CCCcEEecCCCc-CCHH-HHHHHHHhCcCCCEEeccCc--cCHHHHH-HHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 789999998876 3321 01112355666666666522 1111100 0112234455555552 222210
Q ss_pred c-------------------ccccc-cccccc-cCCCcCEEeecC---CCCcceeccc-CC-cccccCCCccceeeccCC
Q 012933 305 A-------------------HQVQP-LFDEKV-SFPRLRWLELSG---LHKVQHLWKE-ND-ESNKAFANLESLEISECS 358 (453)
Q Consensus 305 ~-------------------~~l~~-~~~~~~-~l~~L~~L~l~~---~~~l~~l~~~-~~-~~~~~l~~L~~L~l~~c~ 358 (453)
. +.+.. .+..++ .+++|++|++++ |..+++.+.+ .+ .....+++|++|+++.|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 0 00000 001111 256777777763 3344443221 00 001457777777776655
Q ss_pred C-cccc-CC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchh
Q 012933 359 K-LQKL-VP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCET 435 (453)
Q Consensus 359 ~-l~~l-~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 435 (453)
+ +++. +. ....+++|++|++++| ++++.........+++|++|++++|+ +..... ......++.|++|+
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI------AAAVTKLPSLRYLW 519 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH------HHHHHHCSSCCEEE
T ss_pred CCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHH------HHHHHhcCccCeeE
Confidence 3 2211 11 1234677788888664 35442222234567888888888887 322111 01112467788888
Q ss_pred hhhhHHHHHHhhhhc
Q 012933 436 MSKNEDLLSRSLRHT 450 (453)
Q Consensus 436 l~~~~~~~~~~~~~~ 450 (453)
+++|+ +++.++++.
T Consensus 520 ls~n~-it~~~~~~l 533 (592)
T 3ogk_B 520 VQGYR-ASMTGQDLM 533 (592)
T ss_dssp EESCB-CCTTCTTGG
T ss_pred CcCCc-CCHHHHHHH
Confidence 88887 666655543
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=6.1e-18 Score=161.59 Aligned_cols=230 Identities=17% Similarity=0.217 Sum_probs=131.1
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCc
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGI 105 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 105 (453)
.+.++.|+++++ .++.+|..++. +++|++|+++++ .++.++.. ...+++|++|++++| .++.+|..+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n-~l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAA-GLMELPDT--MQQFAGLETLTLARN-PLRALPASI 146 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESS-CCCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCC-CccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence 467788888875 56777776655 778888888773 35544433 566778888888776 355777777
Q ss_pred cCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCC
Q 012933 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDC 185 (453)
Q Consensus 106 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 185 (453)
..+++|++|++++|..+..++-.-. . ..+...+.++++|++|+++++. +..++... ..+++|++|+++++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~--~---~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLA--S---TDASGEHQGLVNLQSLRLEWTG-IRSLPASI----ANLQNLKSLKIRNS 216 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSE--E---EC-CCCEEESTTCCEEEEEEEC-CCCCCGGG----GGCTTCCEEEEESS
T ss_pred hcCcCCCEEECCCCCCccccChhHh--h---ccchhhhccCCCCCEEECcCCC-cCcchHhh----cCCCCCCEEEccCC
Confidence 7777777777776544322211100 0 0001112335667777776664 44443332 44667777777765
Q ss_pred CCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCcc
Q 012933 186 TNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQ 265 (453)
Q Consensus 186 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~ 265 (453)
. ++.. +.. +..+++|+.|++++|.....++. ....+ ++|++|++.+|...+.+ +..+..+++|+
T Consensus 217 ~-l~~l-~~~-l~~l~~L~~L~Ls~n~~~~~~p~---------~~~~l-~~L~~L~L~~n~~~~~~---p~~~~~l~~L~ 280 (328)
T 4fcg_A 217 P-LSAL-GPA-IHHLPKLEELDLRGCTALRNYPP---------IFGGR-APLKRLILKDCSNLLTL---PLDIHRLTQLE 280 (328)
T ss_dssp C-CCCC-CGG-GGGCTTCCEEECTTCTTCCBCCC---------CTTCC-CCCCEEECTTCTTCCBC---CTTGGGCTTCC
T ss_pred C-CCcC-chh-hccCCCCCEEECcCCcchhhhHH---------HhcCC-CCCCEEECCCCCchhhc---chhhhcCCCCC
Confidence 3 3333 322 56666677777766654443322 11112 66666666666555543 34456666666
Q ss_pred EEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 266 HLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 266 ~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
.|++++|+..+.+|.. +..+++|+.+.+.
T Consensus 281 ~L~L~~n~~~~~iP~~---l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSL---IAQLPANCIILVP 309 (328)
T ss_dssp EEECTTCTTCCCCCGG---GGGSCTTCEEECC
T ss_pred EEeCCCCCchhhccHH---HhhccCceEEeCC
Confidence 6666666666555544 4444444444443
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.4e-17 Score=166.10 Aligned_cols=265 Identities=15% Similarity=0.098 Sum_probs=146.4
Q ss_pred cccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCC-------------cceEe
Q 012933 25 IPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPS-------------LERVS 91 (453)
Q Consensus 25 ~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-------------L~~L~ 91 (453)
..++|++|+++++ .++.+|..+++ +++|++|+++++.-....+.. ...+.+ +++|+
T Consensus 9 ~~~~L~~L~l~~n-~l~~iP~~i~~--------L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTEMPVEAEN--------VKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccchhhhcccC-chhhCChhHhc--------ccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEE
Confidence 3678999999996 67999998877 999999999985422233333 334443 59999
Q ss_pred ecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCc
Q 012933 92 MTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPV 171 (453)
Q Consensus 92 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 171 (453)
+++|. ++.+|. ..++|++|+++++. +.+++. .+++|++|+++++. +..++.
T Consensus 78 l~~~~-l~~lp~---~~~~L~~L~l~~n~---------------l~~lp~---~~~~L~~L~l~~n~-l~~l~~------ 128 (454)
T 1jl5_A 78 LNNLG-LSSLPE---LPPHLESLVASCNS---------------LTELPE---LPQSLKSLLVDNNN-LKALSD------ 128 (454)
T ss_dssp CTTSC-CSCCCS---CCTTCSEEECCSSC---------------CSSCCC---CCTTCCEEECCSSC-CSCCCS------
T ss_pred ecCCc-cccCCC---CcCCCCEEEccCCc---------------CCcccc---ccCCCcEEECCCCc-cCcccC------
Confidence 99974 777765 35789999998642 112221 14788899988875 443221
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
..++|++|+++++. ++.+ | . +..+++|++|+++++ .++.++. .+++|++|++.++. ++.+
T Consensus 129 -~~~~L~~L~L~~n~-l~~l-p-~-~~~l~~L~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n~-l~~l 188 (454)
T 1jl5_A 129 -LPPLLEYLGVSNNQ-LEKL-P-E-LQNSSFLKIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNNQ-LEEL 188 (454)
T ss_dssp -CCTTCCEEECCSSC-CSSC-C-C-CTTCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSSC-CSSC
T ss_pred -CCCCCCEEECcCCC-CCCC-c-c-cCCCCCCCEEECCCC-cCcccCC-------------CcccccEEECcCCc-CCcC
Confidence 12689999998864 5553 4 2 778888999998886 3444322 22678888887763 4443
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
..+..+++|+.|+++++. ++.++.. .++|+.|+++++.- . .+++++.+++|++|+++++ .
T Consensus 189 ----~~~~~l~~L~~L~l~~N~-l~~l~~~------~~~L~~L~l~~n~l-~-------~lp~~~~l~~L~~L~l~~N-~ 248 (454)
T 1jl5_A 189 ----PELQNLPFLTAIYADNNS-LKKLPDL------PLSLESIVAGNNIL-E-------ELPELQNLPFLTTIYADNN-L 248 (454)
T ss_dssp ----CCCTTCTTCCEEECCSSC-CSSCCCC------CTTCCEEECCSSCC-S-------SCCCCTTCTTCCEEECCSS-C
T ss_pred ----ccccCCCCCCEEECCCCc-CCcCCCC------cCcccEEECcCCcC-C-------cccccCCCCCCCEEECCCC-c
Confidence 246777888888887764 3333322 12677777776622 1 1233456677777777776 4
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
++.++ ..+++|+.|++++| .++.+|.. .++|++|++++
T Consensus 249 l~~l~-------~~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 249 LKTLP-------DLPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CSSCC-------SCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCS
T ss_pred CCccc-------ccccccCEEECCCC-cccccCcc---cCcCCEEECcC
Confidence 44443 23356666666663 35555442 25555666654
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=2.3e-16 Score=163.96 Aligned_cols=231 Identities=17% Similarity=0.160 Sum_probs=146.8
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
..++.|+.+.+.+.... ..+. ...+++|+.++++++.- ........ ... ...+|+.+++..+.....
T Consensus 346 ~~l~~L~~l~l~~n~~~-~~~~---~~~l~~L~~L~ls~n~l-~~~~~~~~------~~~-~~~~L~~L~~~~~~~~~~- 412 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGG-NAFS---EVDLPSLEFLDLSRNGL-SFKGCCSQ------SDF-GTISLKYLDLSFNGVITM- 412 (635)
T ss_dssp CBCTTCCEEEEESCCSC-CBCC---CCBCTTCCEEECCSSCC-BEEEECCH------HHH-SCSCCCEEECCSCSEEEE-
T ss_pred ccchhhhhcccccccCC-CCcc---cccccccccchhhcccc-cccccccc------chh-hhhhhhhhhccccccccc-
Confidence 45788899988875432 2222 34688899999887532 21110000 000 126788887766543222
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
...+..+++|+.+++.++......+... +..+.+++.++++.+..-.. .......+++|+.|+++++..
T Consensus 413 ---~~~~~~l~~L~~l~l~~~~~~~~~~~~~--~~~l~~l~~l~ls~n~l~~~------~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 413 ---SSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp ---CSCCTTCTTCCEEECTTSEEESTTSSCT--TTTCTTCCEEECTTSCCEEC------CTTTTTTCTTCCEEECTTCEE
T ss_pred ---cccccccccccchhhhhccccccccccc--cccccccccccccccccccc------cccccccchhhhhhhhhhccc
Confidence 2456778888888888765444333333 56677888888877532221 011234678899999988865
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccC-CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchh
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMI 410 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 410 (453)
...+..+.| ..+++|++|++++| .++.++ ..+..+++|++|++++ ++++.++.. ....+++|++|+++++.--
T Consensus 482 ~~~~~~~~~---~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 482 QENFLPDIF---TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTF-PYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp GGGEECSCC---TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred ccccCchhh---hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChh-HHhCCCCCCEEECCCCcCC
Confidence 666665666 78889999999985 577664 4577889999999977 578777653 4567788999999887532
Q ss_pred HHHHhhccCCccCCCcee-ccccchhhhhhH
Q 012933 411 EQIIQLQVGEEAKDCNVF-KELSCETMSKNE 440 (453)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~-~~l~~l~l~~~~ 440 (453)
+..+..+..+ +.|++|+++++|
T Consensus 556 --------~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 556 --------TSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp --------BCCSSCTTCCCTTCCEEECTTCC
T ss_pred --------CCCHHHHHhhhCcCCEEEeeCCC
Confidence 1223334444 578888887765
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.6e-16 Score=151.64 Aligned_cols=224 Identities=19% Similarity=0.232 Sum_probs=130.5
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA 225 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 225 (453)
.+++++|+++++. +..++... ..+++|++|+++++. ++. +|.. +..+++|++|+++++ .+..++.
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~-lp~~-~~~l~~L~~L~Ls~n-~l~~lp~------ 144 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LME-LPDT-MQQFAGLETLTLARN-PLRALPA------ 144 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCC-CCSC-GGGGTTCSEEEEESC-CCCCCCG------
T ss_pred ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccc-hhHH-HhccCCCCEEECCCC-ccccCcH------
Confidence 3556666666554 44444332 335666666666543 332 2322 455666666666654 2223221
Q ss_pred ccCCCCCCCCccceeeeccCCCcceeccC------CCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNF------TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
....+ ++|++|++.+|..++.++.. ...+..+++|+.|+++++ .++.+|.. +..+++|+.|+++++
T Consensus 145 ---~l~~l-~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~---l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 145 ---SIASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS---IANLQNLKSLKIRNS 216 (328)
T ss_dssp ---GGGGC-TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG---GGGCTTCCEEEEESS
T ss_pred ---HHhcC-cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh---hcCCCCCCEEEccCC
Confidence 01112 55666666665544443210 112344777777777775 33444433 556667777777665
Q ss_pred ccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecc
Q 012933 300 ENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVS 379 (453)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 379 (453)
.--. ..+.++.+++|++|++++|.....++.. + ..+++|++|++++|+..+.+|..+..+++|++|+++
T Consensus 217 ~l~~-------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~---~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 217 PLSA-------LGPAIHHLPKLEELDLRGCTALRNYPPI-F---GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CCCC-------CCGGGGGCTTCCEEECTTCTTCCBCCCC-T---TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCc-------CchhhccCCCCCEEECcCCcchhhhHHH-h---cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 3211 1123456778888888887555555443 3 677888888888887777788777788888888888
Q ss_pred cCcccccccCCCcccccCCcceEEEc
Q 012933 380 KCHGLINLLTFSTSESLVNLGRMMIA 405 (453)
Q Consensus 380 ~c~~l~~l~~~~~~~~l~~L~~L~i~ 405 (453)
+|+.+..+|. ...++++|+.+++.
T Consensus 286 ~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 286 GCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp TCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CCCchhhccH--HHhhccCceEEeCC
Confidence 8777777765 45677777777765
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.5e-16 Score=150.90 Aligned_cols=255 Identities=12% Similarity=0.078 Sum_probs=133.5
Q ss_pred CCcceEeecCCCCcc--ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc
Q 012933 85 PSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (453)
Q Consensus 85 ~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 162 (453)
.+++.|+++++.--. .+|..+..+++|++|+++++.. ....++..+..+++|++|+++++.-...
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------------LVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------------EESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-------------ccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 567788887764333 5677777778888888774221 1123344556677778888777762223
Q ss_pred cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeee
Q 012933 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (453)
Q Consensus 163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 242 (453)
++... ..+++|++|+++++. +++..|.. +..+++|++|+++++.-...++. ......++|++|++
T Consensus 117 ~p~~~----~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~---------~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 117 IPDFL----SQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPD---------SYGSFSKLFTSMTI 181 (313)
T ss_dssp CCGGG----GGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCG---------GGGCCCTTCCEEEC
T ss_pred CCHHH----hCCCCCCEEeCCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcCCH---------HHhhhhhcCcEEEC
Confidence 33322 457778888887753 44333433 66777888888777532212211 01112126777777
Q ss_pred ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (453)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~ 322 (453)
.++. ++.. .+..+..++ |+.|+++++. +....... +..+++|+.|+++++.-.. .++....+++|+
T Consensus 182 ~~N~-l~~~--~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~-------~~~~~~~l~~L~ 247 (313)
T 1ogq_A 182 SRNR-LTGK--IPPTFANLN-LAFVDLSRNM-LEGDASVL--FGSDKNTQKIHLAKNSLAF-------DLGKVGLSKNLN 247 (313)
T ss_dssp CSSE-EEEE--CCGGGGGCC-CSEEECCSSE-EEECCGGG--CCTTSCCSEEECCSSEECC-------BGGGCCCCTTCC
T ss_pred cCCe-eecc--CChHHhCCc-ccEEECcCCc-ccCcCCHH--HhcCCCCCEEECCCCceee-------ecCcccccCCCC
Confidence 6654 2221 234455554 7777777653 22222211 4455556666665542211 112233455666
Q ss_pred EEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccc
Q 012933 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
+|++++| .++......+ ..+++|++|+++++.-...+|.. ..+++|+.+++++.+.+..
T Consensus 248 ~L~Ls~N-~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 248 GLDLRNN-RIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSS-CCEECCCGGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EEECcCC-cccCcCChHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 6666665 3442222222 45566666666663322234433 4555666666655444443
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=9.6e-17 Score=152.26 Aligned_cols=255 Identities=11% Similarity=0.032 Sum_probs=120.6
Q ss_pred cccceEEeccccchh--hhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC
Q 012933 27 SSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG 104 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 104 (453)
.+++.|+++++.--+ .+|..+.. +++|++|+++++..+...... ....+++|++|+++++.-...+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~--------l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN--------LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG--------CTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhC--------CCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHH
Confidence 456666666653222 45554444 666666666643444322221 1445666666666665422255555
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC-CCcEEEec
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN-NLARLVVD 183 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~-~L~~L~l~ 183 (453)
+..+++|++|+++++. ....++..+..+++|++|+++++.-...++... ..++ +|++|+++
T Consensus 121 ~~~l~~L~~L~Ls~N~--------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA--------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTIS 182 (313)
T ss_dssp GGGCTTCCEEECCSSE--------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECC
T ss_pred HhCCCCCCEEeCCCCc--------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECc
Confidence 5556666666665421 001222333444555555555544111222211 1233 45555555
Q ss_pred CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933 184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE 263 (453)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 263 (453)
++. +++..+.. +..++ |+.|++++ +. ++.. .+..+..+++
T Consensus 183 ~N~-l~~~~~~~-~~~l~-L~~L~Ls~----------------------------------N~-l~~~--~~~~~~~l~~ 222 (313)
T 1ogq_A 183 RNR-LTGKIPPT-FANLN-LAFVDLSR----------------------------------NM-LEGD--ASVLFGSDKN 222 (313)
T ss_dssp SSE-EEEECCGG-GGGCC-CSEEECCS----------------------------------SE-EEEC--CGGGCCTTSC
T ss_pred CCe-eeccCChH-HhCCc-ccEEECcC----------------------------------Cc-ccCc--CCHHHhcCCC
Confidence 432 22222222 33333 44444444 32 2211 1233444555
Q ss_pred ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc-eecccCCcc
Q 012933 264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-HLWKENDES 342 (453)
Q Consensus 264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~ 342 (453)
|+.|+++++..-...+. +..+++|+.|+++++.-... ....+..+++|++|++++| .++ .+|..
T Consensus 223 L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~---- 287 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYGT------LPQGLTQLKFLHSLNVSFN-NLCGEIPQG---- 287 (313)
T ss_dssp CSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEEC------CCGGGGGCTTCCEEECCSS-EEEEECCCS----
T ss_pred CCEEECCCCceeeecCc----ccccCCCCEEECcCCcccCc------CChHHhcCcCCCEEECcCC-cccccCCCC----
Confidence 55555555432111111 23344555555555422110 0122456788888888888 444 34332
Q ss_pred cccCCCccceeeccCCCccccC
Q 012933 343 NKAFANLESLEISECSKLQKLV 364 (453)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l~ 364 (453)
..+++|+.+++.+++.+...|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEESTT
T ss_pred -ccccccChHHhcCCCCccCCC
Confidence 578888888888876565544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=5.9e-16 Score=149.39 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=126.7
Q ss_pred CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccc
Q 012933 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (453)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (453)
.+++|++|+++++. +..+.... + ..+++|++|+++++. ++.. +...+..+++|++|+++++ .+..++...
T Consensus 74 ~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~~~--- 143 (353)
T 2z80_A 74 RCVNLQALVLTSNG-INTIEEDS-F--SSLGSLEHLDLSYNY-LSNL-SSSWFKPLSSLTFLNLLGN-PYKTLGETS--- 143 (353)
T ss_dssp TCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSC-CSSC-CHHHHTTCTTCSEEECTTC-CCSSSCSSC---
T ss_pred cCCCCCEEECCCCc-cCccCHhh-c--CCCCCCCEEECCCCc-CCcC-CHhHhCCCccCCEEECCCC-CCcccCchh---
Confidence 34555555554443 33332221 1 335667777776653 4433 4444666777777777664 233322100
Q ss_pred cccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc
Q 012933 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304 (453)
Q Consensus 225 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 304 (453)
... .+++|++|++.++..++.+ .+..+..+++|+.|+++++. +....... +..+++|+.|+++++..-.+
T Consensus 144 ----~~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--l~~l~~L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 144 ----LFS-HLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEELEIDASD-LQSYEPKS--LKSIQNVSHLILHMKQHILL 213 (353)
T ss_dssp ----SCT-TCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETT-CCEECTTT--TTTCSEEEEEEEECSCSTTH
T ss_pred ----hhc-cCCCCcEEECCCCcccccc--CHHHccCCCCCCEEECCCCC-cCccCHHH--HhccccCCeecCCCCccccc
Confidence 111 1266777777766555554 23456667777777777754 33332222 56666777777766532110
Q ss_pred cccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCC----CccccCCCCCCCCCCCEEeccc
Q 012933 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECS----KLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 305 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~----~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
.. .....+++|++|+++++ .++.++...++.....+.++.+++.++. .+..+|..+..+++|++|++++
T Consensus 214 ~~------~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 214 LE------IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HH------HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred hh------hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 00 01124678888888777 4555443333222345566666666642 1223555566778888888877
Q ss_pred CcccccccCCCcccccCCcceEEEcccc
Q 012933 381 CHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 381 c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
++++.+|.. ....+++|++|++++++
T Consensus 287 -N~l~~i~~~-~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 287 -NQLKSVPDG-IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -SCCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred -CCCCccCHH-HHhcCCCCCEEEeeCCC
Confidence 467776653 34567888888887654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=5.3e-15 Score=147.13 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=108.4
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
+++|++|+++++. ++.. +...+..+++|+.|+++++ .++.++.. ... .+++|++|++.++. ++.++
T Consensus 87 l~~L~~L~Ls~n~-i~~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~-~l~~L~~L~L~~N~-i~~~~- 152 (440)
T 3zyj_A 87 LRHLEILQLSRNH-IRTI-EIGAFNGLANLNTLELFDN-RLTTIPNG--------AFV-YLSKLKELWLRNNP-IESIP- 152 (440)
T ss_dssp CSSCCEEECCSSC-CCEE-CGGGGTTCSSCCEEECCSS-CCSSCCTT--------TSC-SCSSCCEEECCSCC-CCEEC-
T ss_pred CCCCCEEECCCCc-CCcc-ChhhccCCccCCEEECCCC-cCCeeCHh--------Hhh-ccccCceeeCCCCc-ccccC-
Confidence 4555555555432 3332 2233445555555555553 23322110 011 11555555555443 33331
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
+..+..+++|+.|++++|..+..++... +..+++|+.|+++++.-- .++.+..+++|++|++++| .++
T Consensus 153 -~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n~l~--------~~~~~~~l~~L~~L~Ls~N-~l~ 220 (440)
T 3zyj_A 153 -SYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMCNLR--------EIPNLTPLIKLDELDLSGN-HLS 220 (440)
T ss_dssp -TTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCSSCCEEECTTSCCS--------SCCCCTTCSSCCEEECTTS-CCC
T ss_pred -HHHhhhCcccCEeCCCCCCCcceeCcch--hhcccccCeecCCCCcCc--------cccccCCCcccCEEECCCC-ccC
Confidence 2345555666666666655555555443 555556666666554211 1223445667777777777 566
Q ss_pred eecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
.+....| ..+++|+.|++++ +.++.++. .+..+++|++|++++ ++++.++.. ....+++|++|++.+.+
T Consensus 221 ~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 221 AIRPGSF---QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTTT---TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred ccChhhh---ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChh-HhccccCCCEEEcCCCC
Confidence 6665555 6777777777777 34555543 456677777777766 466666543 34556777777776543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=151.19 Aligned_cols=275 Identities=14% Similarity=0.109 Sum_probs=156.8
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccC
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHG 104 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~ 104 (453)
|+.....+.++. .++.+|.++ .++|++|+++++ .++.++... ...+++|++|+++++ +++.+ +..
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~----------~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGL----------TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEEDS 95 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTC----------CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTT
T ss_pred CCCCeEeeCCCC-Ccccccccc----------cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHhh
Confidence 555556677664 677777642 347888888883 466655432 567888999999887 45554 345
Q ss_pred ccCCCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEec
Q 012933 105 ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVD 183 (453)
Q Consensus 105 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 183 (453)
+..+++|++|+++++. +..++. .+..+++|++|+++++. +..++....+ ..+++|++|+++
T Consensus 96 ~~~l~~L~~L~Ls~n~---------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~--~~l~~L~~L~l~ 157 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNY---------------LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLF--SHLTKLQILRVG 157 (353)
T ss_dssp TTTCTTCCEEECCSSC---------------CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSC--TTCTTCCEEEEE
T ss_pred cCCCCCCCEEECCCCc---------------CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhh--ccCCCCcEEECC
Confidence 6678888888888542 122222 24556778888877765 4444431102 346777777777
Q ss_pred CCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCC
Q 012933 184 DCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPE 263 (453)
Q Consensus 184 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~ 263 (453)
++..+....+ ..+..+++|+.|+++++. +..+.. .....+ ++|++|++.++. ++.++ ...+..+++
T Consensus 158 ~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~--------~~l~~l-~~L~~L~l~~n~-l~~~~--~~~~~~~~~ 223 (353)
T 2z80_A 158 NMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEP--------KSLKSI-QNVSHLILHMKQ-HILLL--EIFVDVTSS 223 (353)
T ss_dssp ESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECT--------TTTTTC-SEEEEEEEECSC-STTHH--HHHHHHTTT
T ss_pred CCccccccCH-HHccCCCCCCEEECCCCC-cCccCH--------HHHhcc-ccCCeecCCCCc-cccch--hhhhhhccc
Confidence 7655554422 336667777777776653 222211 011112 566666666553 22221 112334666
Q ss_pred ccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce-----eccc
Q 012933 264 LQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH-----LWKE 338 (453)
Q Consensus 264 L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~ 338 (453)
|+.|+++++. ++..+... ++.....+.++.++++++ .+.+ ++..
T Consensus 224 L~~L~L~~n~-l~~~~~~~-----------------------------l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~ 272 (353)
T 2z80_A 224 VECLELRDTD-LDTFHFSE-----------------------------LSTGETNSLIKKFTFRNV-KITDESLFQVMKL 272 (353)
T ss_dssp EEEEEEESCB-CTTCCCC-----------------------------------CCCCCCEEEEESC-BCCHHHHHHHHHH
T ss_pred ccEEECCCCc-cccccccc-----------------------------cccccccchhhccccccc-cccCcchhhhHHH
Confidence 6666666643 22211110 011123356666666665 2322 2221
Q ss_pred CCcccccCCCccceeeccCCCccccCCCC-CCCCCCCEEecccCc
Q 012933 339 NDESNKAFANLESLEISECSKLQKLVPPS-WHLENLEALEVSKCH 382 (453)
Q Consensus 339 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 382 (453)
+ ..+++|++|++++ +.++.+|..+ ..+++|++|++++++
T Consensus 273 -l---~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 273 -L---NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -H---HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -H---hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 5778888888888 4677887764 678888888887753
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=7.7e-15 Score=151.11 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVN 398 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 398 (453)
++|++|++++| .++.++ ..+++|+.|++++ +.++.+|. .+++|++|++++ ++++.+|. ....+++
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~--~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-------VLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQLTRLPE--SLIHLSS 285 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-------CCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS-SCCCSCCG--GGGGSCT
T ss_pred CCCCEEEccCC-ccCcCC-------CCCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCC-CCCCcCCH--HHhhccc
Confidence 55666666555 444443 2345566666666 34555554 345566666655 34555543 2445566
Q ss_pred cceEEEcccc
Q 012933 399 LGRMMIADCK 408 (453)
Q Consensus 399 L~~L~i~~C~ 408 (453)
|+.|++++++
T Consensus 286 L~~L~L~~N~ 295 (622)
T 3g06_A 286 ETTVNLEGNP 295 (622)
T ss_dssp TCEEECCSCC
T ss_pred cCEEEecCCC
Confidence 6666666555
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=8.4e-15 Score=146.20 Aligned_cols=243 Identities=18% Similarity=0.185 Sum_probs=116.1
Q ss_pred cceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCccccc
Q 012933 87 LERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWH 165 (453)
Q Consensus 87 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (453)
.+.++..+ ..++.+|.++ .+++++|+++++. +..+ +..+..+++|++|+++++. +..+..
T Consensus 56 ~~~v~c~~-~~l~~iP~~~--~~~l~~L~L~~n~---------------i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~ 116 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGI--PSNTRYLNLMENN---------------IQMIQADTFRHLHHLEVLQLGRNS-IRQIEV 116 (452)
T ss_dssp SCEEECCS-SCCSSCCSCC--CTTCSEEECCSSC---------------CCEECTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred CcEEEECC-CCcCccCCCC--CCCccEEECcCCc---------------CceECHHHcCCCCCCCEEECCCCc-cCCcCh
Confidence 34555544 3466666543 2567777776431 1111 2233445556666655553 333322
Q ss_pred CCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccC
Q 012933 166 GQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDL 245 (453)
Q Consensus 166 ~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 245 (453)
.. + ..+++|++|+++++. ++.. +...+..+++|++|+++++
T Consensus 117 ~~-~--~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N---------------------------------- 157 (452)
T 3zyi_A 117 GA-F--NGLASLNTLELFDNW-LTVI-PSGAFEYLSKLRELWLRNN---------------------------------- 157 (452)
T ss_dssp TT-T--TTCTTCCEEECCSSC-CSBC-CTTTSSSCTTCCEEECCSC----------------------------------
T ss_pred hh-c--cCcccCCEEECCCCc-CCcc-ChhhhcccCCCCEEECCCC----------------------------------
Confidence 21 1 235555555555542 3332 2333445555555555553
Q ss_pred CCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933 246 PKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE 325 (453)
Q Consensus 246 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 325 (453)
. ++.++ +..+..+++|+.|++++|..++.++... +..+++|+.|+++++.-- .++.+..+++|++|+
T Consensus 158 ~-l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n~l~--------~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 158 P-IESIP--SYAFNRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIK--------DMPNLTPLVGLEELE 224 (452)
T ss_dssp C-CCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCTTCCEEECTTSCCS--------SCCCCTTCTTCCEEE
T ss_pred C-cceeC--HhHHhcCCcccEEeCCCCCCccccChhh--ccCCCCCCEEECCCCccc--------ccccccccccccEEE
Confidence 2 22221 1233444444444444444444444332 344444444444443111 112234455666666
Q ss_pred ecCCCCcceecccCCcccccCCCccceeeccCCCccccC-CCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933 326 LSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV-PPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI 404 (453)
Q Consensus 326 l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 404 (453)
++++ .++.+....| ..+++|+.|+++++ .++.++ ..+..+++|++|++++ ++++.++.. ....+++|++|++
T Consensus 225 Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L 297 (452)
T 3zyi_A 225 MSGN-HFPEIRPGSF---HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH-NNLSSLPHD-LFTPLRYLVELHL 297 (452)
T ss_dssp CTTS-CCSEECGGGG---TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTT-SSTTCTTCCEEEC
T ss_pred CcCC-cCcccCcccc---cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCC-CcCCccChH-HhccccCCCEEEc
Confidence 6665 4555544444 56666666666663 344443 3455566666666655 355555442 3345566666666
Q ss_pred ccc
Q 012933 405 ADC 407 (453)
Q Consensus 405 ~~C 407 (453)
.++
T Consensus 298 ~~N 300 (452)
T 3zyi_A 298 HHN 300 (452)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=4.3e-18 Score=170.42 Aligned_cols=376 Identities=15% Similarity=0.104 Sum_probs=213.8
Q ss_pred cCcccccceEEeccccchh-----hhhcccccccccccccccccceeeccccccccccccccccccCC----CcceEeec
Q 012933 23 VGIPSSLVNLNVSRCDKIE-----EIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFP----SLERVSMT 93 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~-----~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~l~ 93 (453)
+..+++|++|++++|. ++ .++..+.. +++|++|+++++. +...........++ +|++|+++
T Consensus 24 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~--------~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCG-LTEARCKDISSALRV--------NPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQ 93 (461)
T ss_dssp HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHT--------CTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred HhhcCCccEEEccCCC-CCHHHHHHHHHHHHh--------CCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEcc
Confidence 5668999999999985 54 33443333 7899999999843 44322221122344 79999999
Q ss_pred CCCCcc-----ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhh-cCCCCccEEEEeeCCCCcccccCC
Q 012933 94 HCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEM-IGFRDMEYLQLSYFPHLKEIWHGQ 167 (453)
Q Consensus 94 ~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 167 (453)
+|. ++ .++..+..+++|++|+++++. +. ......+...+ ...++|++|+++++. +.......
T Consensus 94 ~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~---------~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 94 NCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LG---------DAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp TSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CH---------HHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred CCC-CCHHHHHHHHHHHccCCceeEEECCCCc-Cc---------hHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 985 54 456777889999999999753 10 01122223222 235679999998885 43311100
Q ss_pred CCC--cCccCCCcEEEecCCCCccccCchhHHh----hcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceee
Q 012933 168 ALP--VSFFNNLARLVVDDCTNMSSAIPANLLR----CLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLR 241 (453)
Q Consensus 168 ~l~--~~~l~~L~~L~l~~c~~l~~~~~~~~l~----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 241 (453)
++ ...+++|++|+++++. +.......+.. ..++|++|++++|. +...... .+....... ++|++|+
T Consensus 162 -l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~----~l~~~l~~~-~~L~~L~ 233 (461)
T 1z7x_W 162 -LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCR----DLCGIVASK-ASLRELA 233 (461)
T ss_dssp -HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHH----HHHHHHHHC-TTCCEEE
T ss_pred -HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHH----HHHHHHHhC-CCccEEe
Confidence 10 1346899999999875 44322222122 25689999999873 3331100 000001113 7899999
Q ss_pred eccCCCcceec--c-CCCcccCCCCccEEeeecCCCCce-----eccCCcccccCCCccccccccccccccccccccccc
Q 012933 242 LIDLPKLKRFC--N-FTGNIIELPELQHLTIQNCPDMET-----FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (453)
Q Consensus 242 L~~~~~l~~~~--~-~~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 313 (453)
+.++. +++.. . .+.....+++|+.|++++| .++. ++.. +..+++|+.|+++++.--..+ ...+.
T Consensus 234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~---l~~~~~L~~L~Ls~n~i~~~~---~~~l~ 305 (461)
T 1z7x_W 234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRV---LRAKESLKELSLAGNELGDEG---ARLLC 305 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH---HHHCTTCCEEECTTCCCHHHH---HHHHH
T ss_pred ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHH---HhhCCCcceEECCCCCCchHH---HHHHH
Confidence 98873 43310 0 0112335789999999987 4444 2222 455778999999887321100 00000
Q ss_pred c-c-ccCCCcCEEeecCCCCcceecccCCc-ccccCCCccceeeccCCCccccC-----CCCC-CCCCCCEEecccCccc
Q 012933 314 E-K-VSFPRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECSKLQKLV-----PPSW-HLENLEALEVSKCHGL 384 (453)
Q Consensus 314 ~-~-~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~-----~~~~-~l~~L~~L~l~~c~~l 384 (453)
+ . ...++|++|++++| .++......++ ....+++|++|++++| .+++.. ..+. ..++|++|++++| .+
T Consensus 306 ~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i 382 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DV 382 (461)
T ss_dssp HHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CC
T ss_pred HHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CC
Confidence 0 0 12369999999998 35443211111 1156789999999996 455432 1111 2679999999886 56
Q ss_pred cc-----ccCCCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhHH
Q 012933 385 IN-----LLTFSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNED 441 (453)
Q Consensus 385 ~~-----l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 441 (453)
++ ++. ....+++|++|++++|+--..-...-..........++.|+.++.+..+.
T Consensus 383 ~~~~~~~l~~--~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 383 SDSSCSSLAA--TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CHHHHHHHHH--HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred ChhhHHHHHH--HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 63 332 34467899999999886321110000000112233456666666555543
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=6.1e-15 Score=151.88 Aligned_cols=256 Identities=18% Similarity=0.123 Sum_probs=175.5
Q ss_pred cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 106 (453)
.+++.|+++++ .++.+|..+ .++|++|+++++ +++.++. .+++|++|++++|. ++.+|.
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC---
T ss_pred CCCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC---
Confidence 35888898886 677777642 258889998884 4665543 46889999998874 777775
Q ss_pred CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
.+++|++|+++++. +..++. .+++|++|+++++. +..++. .+++|++|++++|
T Consensus 99 ~l~~L~~L~Ls~N~---------------l~~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N- 151 (622)
T 3g06_A 99 LPPGLLELSIFSNP---------------LTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN- 151 (622)
T ss_dssp CCTTCCEEEECSCC---------------CCCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-
T ss_pred CCCCCCEEECcCCc---------------CCCCCC---CCCCcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-
Confidence 67888889888642 112222 36788888888875 554332 2488999999886
Q ss_pred CccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccE
Q 012933 187 NMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQH 266 (453)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~ 266 (453)
.++.+ +. .+++|+.|+++++ .++.++ ..+++|++|++.++. ++.++ . .+++|+.
T Consensus 152 ~l~~l-~~----~~~~L~~L~L~~N-~l~~l~-------------~~~~~L~~L~Ls~N~-l~~l~---~---~~~~L~~ 205 (622)
T 3g06_A 152 QLASL-PA----LPSELCKLWAYNN-QLTSLP-------------MLPSGLQELSVSDNQ-LASLP---T---LPSELYK 205 (622)
T ss_dssp CCSCC-CC----CCTTCCEEECCSS-CCSCCC-------------CCCTTCCEEECCSSC-CSCCC---C---CCTTCCE
T ss_pred cCCCc-CC----ccCCCCEEECCCC-CCCCCc-------------ccCCCCcEEECCCCC-CCCCC---C---ccchhhE
Confidence 35443 21 3577888888875 444432 134788888888764 44432 1 2478888
Q ss_pred EeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccC
Q 012933 267 LTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAF 346 (453)
Q Consensus 267 L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l 346 (453)
|+++++. ++.++.. +++|+.|+++++. +. .++ ..+++|++|++++| .++.++. .+
T Consensus 206 L~L~~N~-l~~l~~~------~~~L~~L~Ls~N~-L~-------~lp--~~l~~L~~L~Ls~N-~L~~lp~-------~~ 260 (622)
T 3g06_A 206 LWAYNNR-LTSLPAL------PSGLKELIVSGNR-LT-------SLP--VLPSELKELMVSGN-RLTSLPM-------LP 260 (622)
T ss_dssp EECCSSC-CSSCCCC------CTTCCEEECCSSC-CS-------CCC--CCCTTCCEEECCSS-CCSCCCC-------CC
T ss_pred EECcCCc-ccccCCC------CCCCCEEEccCCc-cC-------cCC--CCCCcCcEEECCCC-CCCcCCc-------cc
Confidence 8888753 4444422 3588888888762 22 111 35688999999988 6776653 56
Q ss_pred CCccceeeccCCCccccCCCCCCCCCCCEEecccCc
Q 012933 347 ANLESLEISECSKLQKLVPPSWHLENLEALEVSKCH 382 (453)
Q Consensus 347 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 382 (453)
++|+.|++++| .++.+|..+.++++|+.|++++++
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 78999999984 678888888889999999998744
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1.8e-14 Score=143.24 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=77.7
Q ss_pred CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccc
Q 012933 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQN 224 (453)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 224 (453)
++++|++|+++++. +..++... + ..+++|++|+++++. ++.. +...+..+++|+.|++++++.+..++..
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~---- 179 (440)
T 3zyj_A 110 GLANLNTLELFDNR-LTTIPNGA-F--VYLSKLKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYISEG---- 179 (440)
T ss_dssp TCSSCCEEECCSSC-CSSCCTTT-S--CSCSSCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT----
T ss_pred CCccCCEEECCCCc-CCeeCHhH-h--hccccCceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeCcc----
Confidence 34555555555543 33333221 1 235555666555542 3332 2233455555555555554444433210
Q ss_pred cccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccc
Q 012933 225 ADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLL 304 (453)
Q Consensus 225 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 304 (453)
....+ ++|++|++.++ .++.+ ..+..+++|+.|+++++ .+..++... +..+++|+.|+++++..-.+
T Consensus 180 ----~~~~l-~~L~~L~L~~n-~l~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 180 ----AFEGL-SNLRYLNLAMC-NLREI----PNLTPLIKLDELDLSGN-HLSAIRPGS--FQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp ----TTTTC-SSCCEEECTTS-CCSSC----CCCTTCSSCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTCCCCEE
T ss_pred ----hhhcc-cccCeecCCCC-cCccc----cccCCCcccCEEECCCC-ccCccChhh--hccCccCCEEECCCCceeEE
Confidence 00112 45555555544 23332 12444555555555554 233333222 34444444444444311110
Q ss_pred cccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933 305 AHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE 356 (453)
Q Consensus 305 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~ 356 (453)
....+..+++|++|+++++ .++.++.+.+ ..+++|+.|++++
T Consensus 247 ------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 247 ------ERNAFDNLQSLVEINLAHN-NLTLLPHDLF---TPLHHLERIHLHH 288 (440)
T ss_dssp ------CTTSSTTCTTCCEEECTTS-CCCCCCTTTT---SSCTTCCEEECCS
T ss_pred ------ChhhhcCCCCCCEEECCCC-CCCccChhHh---ccccCCCEEEcCC
Confidence 0011234455555555555 4555554444 4555555555554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.5e-14 Score=144.34 Aligned_cols=223 Identities=15% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCcceEeecCCCCcccc-ccCccCCCCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcc
Q 012933 85 PSLERVSMTHCPNMKTF-SHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKE 162 (453)
Q Consensus 85 ~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 162 (453)
+++++|+++++. ++.+ +..+..+++|++|+++++. +..+ +..+.++++|++|+++++. +..
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~---------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~ 137 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS---------------IRQIEVGAFNGLASLNTLELFDNW-LTV 137 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC---------------CCEECTTTTTTCTTCCEEECCSSC-CSB
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc---------------cCCcChhhccCcccCCEEECCCCc-CCc
Confidence 456666666653 4433 3445556666666666431 1111 1233456677777777665 444
Q ss_pred cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeee
Q 012933 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRL 242 (453)
Q Consensus 163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 242 (453)
++... + ..+++|++|+++++. ++.+ +...+..+++|+.|++++++.+..++.. ....+ ++|++|++
T Consensus 138 ~~~~~-~--~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------~~~~l-~~L~~L~L 203 (452)
T 3zyi_A 138 IPSGA-F--EYLSKLRELWLRNNP-IESI-PSYAFNRVPSLMRLDLGELKKLEYISEG--------AFEGL-FNLKYLNL 203 (452)
T ss_dssp CCTTT-S--SSCTTCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT--------TTTTC-TTCCEEEC
T ss_pred cChhh-h--cccCCCCEEECCCCC-ccee-CHhHHhcCCcccEEeCCCCCCccccChh--------hccCC-CCCCEEEC
Confidence 44332 2 346778888877753 4444 3344667777777777776666554320 01112 66777777
Q ss_pred ccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC
Q 012933 243 IDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR 322 (453)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~ 322 (453)
.++. ++.+ ..+..+++|+.|+++++. +..++... +..+++|+.|+++++..-.+ ....+..+++|+
T Consensus 204 ~~n~-l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~ 269 (452)
T 3zyi_A 204 GMCN-IKDM----PNLTPLVGLEELEMSGNH-FPEIRPGS--FHGLSSLKKLWVMNSQVSLI------ERNAFDGLASLV 269 (452)
T ss_dssp TTSC-CSSC----CCCTTCTTCCEEECTTSC-CSEECGGG--GTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCC
T ss_pred CCCc-cccc----ccccccccccEEECcCCc-CcccCccc--ccCccCCCEEEeCCCcCceE------CHHHhcCCCCCC
Confidence 6653 3333 235566677777776643 33332222 44444555555544321110 001123455666
Q ss_pred EEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933 323 WLELSGLHKVQHLWKENDESNKAFANLESLEISE 356 (453)
Q Consensus 323 ~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~ 356 (453)
+|+++++ .++.++.+.+ ..+++|+.|++++
T Consensus 270 ~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 270 ELNLAHN-NLSSLPHDLF---TPLRYLVELHLHH 299 (452)
T ss_dssp EEECCSS-CCSCCCTTSS---TTCTTCCEEECCS
T ss_pred EEECCCC-cCCccChHHh---ccccCCCEEEccC
Confidence 6666655 4555555544 4556666666655
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=5.1e-18 Score=169.89 Aligned_cols=377 Identities=16% Similarity=0.068 Sum_probs=226.6
Q ss_pred ccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccc---cccccccCCCcceEeecCCCCccc-c
Q 012933 26 PSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFC---LENYTLEFPSLERVSMTHCPNMKT-F 101 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-~ 101 (453)
+++|++|+++++ .+...+... ....+++|++|++++|. ++... .......+++|++|+++++. +.. .
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~------~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 72 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAE------LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVG 72 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHH------HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred Cccceehhhhhc-ccCchhHHH------HHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHH
Confidence 568999999987 455443210 12238999999999965 44321 11224567999999999975 543 1
Q ss_pred ccCcc-CCC----CcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCC---cCc
Q 012933 102 SHGIL-STP----KLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALP---VSF 173 (453)
Q Consensus 102 ~~~~~-~~~----~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~---~~~ 173 (453)
+..+. .++ +|++|++++|.- . ......++..+..+++|++|+++++. +....... +. ...
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i------~----~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~ 140 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCL------T----GAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDP 140 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCC------B----GGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTST
T ss_pred HHHHHHHHhhCCCceeEEEccCCCC------C----HHHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcC
Confidence 11111 233 799999997631 0 12234667788889999999999987 44211110 10 022
Q ss_pred cCCCcEEEecCCCCccccCc---hhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcce
Q 012933 174 FNNLARLVVDDCTNMSSAIP---ANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKR 250 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 250 (453)
.++|++|++++|. ++.... ...+..+++|++|+++++. +.+.....-... .....++|++|++.++. ++.
T Consensus 141 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~----l~~~~~~L~~L~L~~n~-l~~ 213 (461)
T 1z7x_W 141 QCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQG----LKDSPCQLEALKLESCG-VTS 213 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH----HHHSCCCCCEEECTTSC-CBT
T ss_pred CCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHH----HhcCCCCceEEEccCCC-CcH
Confidence 5689999999984 443211 2346678999999999975 443221100000 00012689999999884 332
Q ss_pred ec--cCCCcccCCCCccEEeeecCCCCceeccC---CcccccCCCcccccccccccccccccccccccccccCCCcCEEe
Q 012933 251 FC--NFTGNIIELPELQHLTIQNCPDMETFISN---SVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLE 325 (453)
Q Consensus 251 ~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 325 (453)
.. ..+..+..+++|++|++++|. +++.... ......+++|+.|++++|.--.. +.......+..+++|++|+
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAK--GCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH--HHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHH--HHHHHHHHHhhCCCcceEE
Confidence 10 012346678999999999974 4432211 01123467999999999832210 0000011234579999999
Q ss_pred ecCCCCcceecccCCcc--cccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEecccCcccccccCCCccc----
Q 012933 326 LSGLHKVQHLWKENDES--NKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEVSKCHGLINLLTFSTSE---- 394 (453)
Q Consensus 326 l~~~~~l~~l~~~~~~~--~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~---- 394 (453)
++++ .+++.....+.. ....++|++|++++|. ++. ++..+..+++|++|+++++ .+.+.....+..
T Consensus 291 Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 291 LAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ 367 (461)
T ss_dssp CTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS
T ss_pred CCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC
Confidence 9998 555432222110 0244799999999975 443 3445567899999999885 676643221222
Q ss_pred ccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 395 SLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 395 ~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
..++|++|++++|. +..... ...+..+..++.|++|++++++
T Consensus 368 ~~~~L~~L~L~~n~-i~~~~~---~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 368 PGSVLRVLWLADCD-VSDSSC---SSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTCCCCEEECTTSC-CCHHHH---HHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCceEEEECCCCC-CChhhH---HHHHHHHHhCCCccEEECCCCC
Confidence 25799999999996 321100 0012233456788888888774
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.4e-14 Score=136.79 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=31.1
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCC-CCCEEeccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLE-NLEALEVSK 380 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~ 380 (453)
.+++|++|+++++ .++.++...+ ..+++|+.|+++++.-....+..+..++ +|++|++++
T Consensus 197 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 197 SLSSLQVLNMSHN-NFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TCTTCCEEECTTS-CCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CCCCCCEEECCCC-ccCccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 3455666666655 4444444333 4566666666666432222333444453 666666655
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=3.8e-15 Score=141.51 Aligned_cols=194 Identities=18% Similarity=0.150 Sum_probs=87.6
Q ss_pred hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221 (453)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 221 (453)
.+..+++|++|+++++. +..... ...+++|++|+++++. ++.. ...++|+.|+++++ .+..++.
T Consensus 53 ~~~~l~~L~~L~Ls~n~-l~~~~~-----~~~l~~L~~L~Ls~n~-l~~l------~~~~~L~~L~l~~n-~l~~~~~-- 116 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNV-LYETLD-----LESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAANN-NISRVSC-- 116 (317)
T ss_dssp HHTTCTTCCEEECTTSC-CEEEEE-----ETTCTTCCEEECCSSE-EEEE------EECTTCCEEECCSS-CCSEEEE--
T ss_pred HhhCCCcCCEEECCCCc-CCcchh-----hhhcCCCCEEECcCCc-cccc------cCCCCcCEEECCCC-ccCCcCc--
Confidence 34445566666665554 222111 1335566666666542 3222 12355566665553 2222211
Q ss_pred ccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccc
Q 012933 222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN 301 (453)
Q Consensus 222 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 301 (453)
..+++|++|++.++. ++.+ .+..+..+++|+.|+++++. +...+... +...+++|+.|+++++.-
T Consensus 117 ----------~~~~~L~~L~l~~N~-l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 117 ----------SRGQGKKNIYLANNK-ITML--RDLDEGCRSRVQYLDLKLNE-IDTVNFAE-LAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ----------CCCSSCEEEECCSSC-CCSG--GGBCTGGGSSEEEEECTTSC-CCEEEGGG-GGGGTTTCCEEECTTSCC
T ss_pred ----------cccCCCCEEECCCCC-CCCc--cchhhhccCCCCEEECCCCC-CCcccHHH-HhhccCcCCEEECCCCcC
Confidence 012556666655542 2222 11234455566666665543 22222211 122344555555555421
Q ss_pred ccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 302 ~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
-. ++....+++|++|++++| .++.++.. + ..+++|+.|++++ +.++.+|..+..+++|++|++++
T Consensus 182 ~~--------~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~---~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 182 YD--------VKGQVVFAKLKTLDLSSN-KLAFMGPE-F---QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CE--------EECCCCCTTCCEEECCSS-CCCEECGG-G---GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred cc--------cccccccccCCEEECCCC-cCCcchhh-h---cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccC
Confidence 11 011223455555555555 45554443 2 4555555555555 24555555555555555555554
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=3.1e-14 Score=132.95 Aligned_cols=205 Identities=18% Similarity=0.146 Sum_probs=130.4
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.++|++|+++++. ++.. +...+..+++|++|+++++ .++.+.. . ....+ ++|++|++.++..++.+
T Consensus 31 ~~~l~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~----~----~~~~l-~~L~~L~l~~n~~l~~~-- 96 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHV-PAASFRACRNLTILWLHSN-VLARIDA----A----AFTGL-ALLEQLDLSDNAQLRSV-- 96 (285)
T ss_dssp CTTCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEECT----T----TTTTC-TTCCEEECCSCTTCCCC--
T ss_pred CCCceEEEeeCCc-CCcc-CHHHcccCCCCCEEECCCC-ccceeCH----h----hcCCc-cCCCEEeCCCCCCcccc--
Confidence 4677777777653 4443 3334666777777777664 3333211 0 11112 67777777766555543
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
.+..+..+++|+.|+++++. +..++... +..+++|+.|+++++.--.+. ...+..+++|++|+++++ .++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~l~ 166 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCG-LQELGPGL--FRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGN-RIS 166 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-CCC
T ss_pred CHHHhcCCcCCCEEECCCCc-CCEECHhH--hhCCcCCCEEECCCCcccccC------HhHhccCCCccEEECCCC-ccc
Confidence 23456667777777777754 33333322 566677777777765321110 112456788999999888 688
Q ss_pred eecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
.++...+ ..+++|++|+++++ .++.+ |..+..+++|++|++++ ++++.++.. ....+++|++|++++++
T Consensus 167 ~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 167 SVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred ccCHHHh---cCccccCEEECCCC-cccccCHhHccCcccccEeeCCC-CcCCcCCHH-HcccCcccCEEeccCCC
Confidence 8877666 78889999999985 45555 56778889999999987 467776542 34567889999988655
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=1.7e-15 Score=143.84 Aligned_cols=245 Identities=14% Similarity=0.092 Sum_probs=135.5
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+++|++|+++++ +++.++.. ....+++|++|++++|. ++..+. +..+++|++|+++++. +.
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~---------------l~ 93 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY---------------VQ 93 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE---------------EE
T ss_pred CCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc---------------cc
Confidence 667777777773 45544322 14567778888887764 443332 5667777777777542 11
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
. +...++|++|+++++. +..++.. .+++|++|+++++. ++...+ ..+..+++|+.|+++++ .+..+
T Consensus 94 ~----l~~~~~L~~L~l~~n~-l~~~~~~------~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~ 159 (317)
T 3o53_A 94 E----LLVGPSIETLHAANNN-ISRVSCS------RGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLKLN-EIDTV 159 (317)
T ss_dssp E----EEECTTCCEEECCSSC-CSEEEEC------CCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECTTS-CCCEE
T ss_pred c----ccCCCCcCEEECCCCc-cCCcCcc------ccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECCCC-CCCcc
Confidence 1 1123667777777665 4443332 25677777777753 443322 23556677777777664 23322
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
.... ... .+++|++|++.++. ++.++ ....+++|+.|+++++. ++.++.
T Consensus 160 ~~~~-------~~~-~l~~L~~L~L~~N~-l~~~~----~~~~l~~L~~L~Ls~N~-l~~l~~----------------- 208 (317)
T 3o53_A 160 NFAE-------LAA-SSDTLEHLNLQYNF-IYDVK----GQVVFAKLKTLDLSSNK-LAFMGP----------------- 208 (317)
T ss_dssp EGGG-------GGG-GTTTCCEEECTTSC-CCEEE----CCCCCTTCCEEECCSSC-CCEECG-----------------
T ss_pred cHHH-------Hhh-ccCcCCEEECCCCc-Ccccc----cccccccCCEEECCCCc-CCcchh-----------------
Confidence 1100 000 11556666665543 33331 12235566666665542 222221
Q ss_pred ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEE
Q 012933 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEAL 376 (453)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L 376 (453)
++..+++|++|++++| .++.++.. + ..+++|+.|++++++-. ..++..+..+++|+.+
T Consensus 209 ----------------~~~~l~~L~~L~L~~N-~l~~l~~~-~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 209 ----------------EFQSAAGVTWISLRNN-KLVLIEKA-L---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ----------------GGGGGTTCSEEECTTS-CCCEECTT-C---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred ----------------hhcccCcccEEECcCC-cccchhhH-h---hcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 2234567777777777 56666544 2 56777788877774432 2455556667777777
Q ss_pred ecccCcccccc
Q 012933 377 EVSKCHGLINL 387 (453)
Q Consensus 377 ~l~~c~~l~~l 387 (453)
++.+++.++..
T Consensus 268 ~l~~~~~l~~~ 278 (317)
T 3o53_A 268 AKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHSS
T ss_pred ECCCchhccCC
Confidence 77766666654
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=8.7e-14 Score=126.41 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=49.1
Q ss_pred cCCCcC-EEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCC-CCCCEEecccCcccccccCCCcc
Q 012933 317 SFPRLR-WLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHL-ENLEALEVSKCHGLINLLTFSTS 393 (453)
Q Consensus 317 ~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~ 393 (453)
.+++|+ +|+++++ .++.++...| .. ++|+.|+++++..++.++. .+..+ ++|++|++++ +.++.++..
T Consensus 153 ~l~~L~~~L~l~~n-~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--- 223 (239)
T 2xwt_C 153 GLCNETLTLKLYNN-GFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--- 223 (239)
T ss_dssp TTBSSEEEEECCSC-CCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT---
T ss_pred chhcceeEEEcCCC-CCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh---
Confidence 345666 6666665 4556665554 33 6677777777544666654 34556 6777777766 556665542
Q ss_pred cccCCcceEEEcccch
Q 012933 394 ESLVNLGRMMIADCKM 409 (453)
Q Consensus 394 ~~l~~L~~L~i~~C~~ 409 (453)
.+++|++|++.++..
T Consensus 224 -~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 -GLEHLKELIARNTWT 238 (239)
T ss_dssp -TCTTCSEEECTTC--
T ss_pred -HhccCceeeccCccC
Confidence 456677777766654
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=5.8e-15 Score=141.29 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=100.3
Q ss_pred CCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCc-cc
Q 012933 85 PSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLK-EI 163 (453)
Q Consensus 85 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~ 163 (453)
++++.+++.++ .+...+..+..+++|++|++++|. .....++..+..+++|++|+++++. +. ..
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-------------l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~ 134 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-------------IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI 134 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-------------ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-------------cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH
Confidence 55555555554 233333334455666666666431 1112244445556666666666664 22 11
Q ss_pred ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCC-ccceeee
Q 012933 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFP-KLYGLRL 242 (453)
Q Consensus 164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~L 242 (453)
+.. + ..+++|++|++++|..+++......+..+++|++|++++|..+++..... ... .++ +|++|++
T Consensus 135 ~~~--l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~-~l~~~L~~L~l 202 (336)
T 2ast_B 135 VNT--L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-------AVA-HVSETITQLNL 202 (336)
T ss_dssp HHH--H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-------HHH-HSCTTCCEEEC
T ss_pred HHH--H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-------HHH-hcccCCCEEEe
Confidence 111 1 23667777777776555432122335667777777777764444321000 000 125 6777777
Q ss_pred ccCC-CcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc
Q 012933 243 IDLP-KLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL 321 (453)
Q Consensus 243 ~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L 321 (453)
.++. .+++. ..+..+..+++|+.|++++|..+++..... +..+++|+.|++++|..+. + ..+..+..+++|
T Consensus 203 ~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~--~---~~~~~l~~~~~L 274 (336)
T 2ast_B 203 SGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYDII--P---ETLLELGEIPTL 274 (336)
T ss_dssp CSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCTTCC--G---GGGGGGGGCTTC
T ss_pred CCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCCCCC--H---HHHHHHhcCCCC
Confidence 7664 33320 112344566777777777766444322221 3344444555444443111 0 001122345566
Q ss_pred CEEeecCC
Q 012933 322 RWLELSGL 329 (453)
Q Consensus 322 ~~L~l~~~ 329 (453)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 66666655
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=2e-13 Score=128.76 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=130.2
Q ss_pred ccCCCcEEEecCCCCccccC-chhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 173 FFNNLARLVVDDCTNMSSAI-PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~-~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
.+++|++|+++++. ++... ....+..+++|++|+++++. +..++. ... .+++|++|++.++. ++.+
T Consensus 50 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~---------~~~-~l~~L~~L~l~~n~-l~~~ 116 (306)
T 2z66_A 50 KLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS---------NFL-GLEQLEHLDFQHSN-LKQM 116 (306)
T ss_dssp TCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE---------EEE-TCTTCCEEECTTSE-EESS
T ss_pred ccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChh---------hcC-CCCCCCEEECCCCc-cccc
Confidence 35667777776653 22110 01224456777777776652 333221 011 12677777776643 3322
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
+ ....+..+++|+.|+++++. +....... +..+++|+.|+++++.... . .....+..+++|++|++++| .
T Consensus 117 ~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~---~--~~~~~~~~l~~L~~L~Ls~n-~ 186 (306)
T 2z66_A 117 S-EFSVFLSLRNLIYLDISHTH-TRVAFNGI--FNGLSSLEVLKMAGNSFQE---N--FLPDIFTELRNLTFLDLSQC-Q 186 (306)
T ss_dssp T-TTTTTTTCTTCCEEECTTSC-CEECSTTT--TTTCTTCCEEECTTCEEGG---G--EECSCCTTCTTCCEEECTTS-C
T ss_pred c-cchhhhhccCCCEEECCCCc-CCccchhh--cccCcCCCEEECCCCcccc---c--cchhHHhhCcCCCEEECCCC-C
Confidence 1 11356677788888887764 33333322 5667788888887763211 0 01123457899999999999 7
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcccc
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIADCK 408 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~ 408 (453)
++.++...+ ..+++|++|++++ +.++.++. .+..+++|++|+++++ .++..... ....+ ++|++|++++++
T Consensus 187 l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAF---NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTT---TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHh---cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHH-HHHhhhccCCEEEccCCC
Confidence 888876666 7899999999999 45777765 5678999999999885 66665443 33455 499999998765
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=3.5e-14 Score=132.61 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=7.9
Q ss_pred ccCCCCccEEeeecC
Q 012933 258 IIELPELQHLTIQNC 272 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c 272 (453)
+..+++|+.|+++++
T Consensus 149 ~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccCCCccEEECCCC
Confidence 444555555555553
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1e-14 Score=138.24 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=50.0
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccc-------cCCCcceEeecCC
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTL-------EFPSLERVSMTHC 95 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~l~~L~~L~l~~c 95 (453)
++..++|+.|+++++. + .+|..+.. .|+.|++++ ..++......... .+++|++|++++|
T Consensus 39 ~~~~~~L~~l~l~~n~-l-~~p~~~~~----------~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT-E-ADLGQFTD----------IIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEEECTTHHHHCCT-T-CCCHHHHH----------HHHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred EccCCCceeEeecccc-c-ccHHHHHH----------HHhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 3456677778887763 4 66654433 377777777 3343322221122 4788888888887
Q ss_pred CCccccccCc--cCCCCcceEEeccc
Q 012933 96 PNMKTFSHGI--LSTPKLHKVQVTEK 119 (453)
Q Consensus 96 ~~l~~~~~~~--~~~~~L~~L~l~~~ 119 (453)
.--..+|..+ ..+++|++|+++++
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred cccchhHHHHHHhcCCCccEEEccCC
Confidence 5333566554 55677777777653
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=2.7e-13 Score=130.49 Aligned_cols=241 Identities=18% Similarity=0.185 Sum_probs=126.0
Q ss_pred eEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCC
Q 012933 89 RVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQ 167 (453)
Q Consensus 89 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~ 167 (453)
.++.++ .+++.+|..+ .+++++|+++++ .+..++. +..++++|++|+++++.-...++.+.
T Consensus 13 ~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPSDL--PRNAIELRFVLT---------------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp EEEEES-TTCCSCCTTC--CTTCSEEEEESC---------------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred EEEecC-CCCCccCcCc--CCCCCEEEccCC---------------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 455544 3577777644 356777777632 2233332 23455666666666665333333322
Q ss_pred CCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933 168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK 247 (453)
Q Consensus 168 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 247 (453)
+ ..++++.++.+.++.+++.+. .+.+..+++|++|+++++ .+..++... .... .++..+.+.++..
T Consensus 75 -f--~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~n-~l~~~~~~~--------~~~~-~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 75 -F--SNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT-GIKHLPDVH--------KIHS-LQKVLLDIQDNIN 140 (350)
T ss_dssp -B--CSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEEE-CCSSCCCCT--------TCCB-SSCEEEEEESCTT
T ss_pred -h--hcchhhhhhhcccCCcccccC-chhhhhcccccccccccc-ccccCCchh--------hccc-chhhhhhhccccc
Confidence 2 234555555555555555442 233556666666666553 233222110 0001 3344555555444
Q ss_pred cceeccCCCcccCC-CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEee
Q 012933 248 LKRFCNFTGNIIEL-PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLEL 326 (453)
Q Consensus 248 l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l 326 (453)
++.++ ...+..+ ..++.|+++++ .++.++.. ....++|+.+.+
T Consensus 141 i~~l~--~~~f~~~~~~l~~L~L~~N-~i~~i~~~---------------------------------~f~~~~L~~l~l 184 (350)
T 4ay9_X 141 IHTIE--RNSFVGLSFESVILWLNKN-GIQEIHNS---------------------------------AFNGTQLDELNL 184 (350)
T ss_dssp CCEEC--TTSSTTSBSSCEEEECCSS-CCCEECTT---------------------------------SSTTEEEEEEEC
T ss_pred ccccc--ccchhhcchhhhhhccccc-cccCCChh---------------------------------hccccchhHHhh
Confidence 44442 1222222 23444555442 23333222 223356777777
Q ss_pred cCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933 327 SGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 327 ~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (453)
.++..++.++.+.| ..+++|+.|++++ +.++.+|.+. +.+|++|.+.++++++.+|. ...+++|+.+++.+
T Consensus 185 ~~~n~l~~i~~~~f---~~l~~L~~LdLs~-N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNNLEELPNDVF---HGASGPVILDISR-TRIHSLPSYG--LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCTTTT---TTEECCSEEECTT-SCCCCCCSSS--CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ccCCcccCCCHHHh---ccCcccchhhcCC-CCcCccChhh--hccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 66666777776666 6777777777777 4677776542 56667777666777777664 34567777777653
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.4e-13 Score=138.51 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=89.1
Q ss_pred hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221 (453)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 221 (453)
.+..+++|++|+++++. +..... ...+++|++|+++++. +++.. ..++|+.|+++++ .+..++.
T Consensus 53 ~~~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l~------~~~~L~~L~L~~N-~l~~~~~-- 116 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNV-LYETLD-----LESLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVSC-- 116 (487)
T ss_dssp GGTTCTTCCEEECTTSC-CEEEEE-----CTTCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCCCEEE--
T ss_pred HHhCCCCCCEEEeeCCC-CCCCcc-----cccCCCCCEEEecCCc-CCCCC------CCCCcCEEECcCC-cCCCCCc--
Confidence 33445556666655554 222111 1335556666665542 33221 1255555555554 2222211
Q ss_pred ccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccc
Q 012933 222 EQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEEN 301 (453)
Q Consensus 222 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 301 (453)
..+++|++|++.++. ++.+ .+..+..+++|+.|+++++.--...+.. +...+++|+.|+++++.-
T Consensus 117 ----------~~l~~L~~L~L~~N~-l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 117 ----------SRGQGKKNIYLANNK-ITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ----------CCCSSCEEEECCSSC-CCSG--GGBCGGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCC
T ss_pred ----------cccCCCCEEECCCCC-CCCC--CchhhcCCCCCCEEECCCCCCCCcChHH--HhhhCCcccEEecCCCcc
Confidence 122556666665543 2221 1234455556666666554322222221 112445555665555421
Q ss_pred ccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 302 FLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 302 ~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
-. ++....+++|++|++++| .++.++.. + ..+++|+.|++++ +.++.+|..+..+++|+.|++++
T Consensus 182 ~~--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~---~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 182 YD--------VKGQVVFAKLKTLDLSSN-KLAFMGPE-F---QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CE--------EECCCCCTTCCEEECCSS-CCCEECGG-G---GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred cc--------ccccccCCCCCEEECCCC-CCCCCCHh-H---cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCC
Confidence 11 011223555666666555 45555443 2 4555566666655 34555555555555566666555
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=2.3e-13 Score=123.60 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=129.7
Q ss_pred CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
+++++|+++++. ++.+ +...+..+++|+.|+++++..++.++... .. .+++|++|++.+|..++.++
T Consensus 31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~--------f~-~l~~L~~L~l~~~n~l~~i~-- 97 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY-NLSKVTHIEIRNTRNLTYID-- 97 (239)
T ss_dssp TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTT--------EE-SCTTCCEEEEEEETTCCEEC--
T ss_pred CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhH--------cC-CCcCCcEEECCCCCCeeEcC--
Confidence 467777777753 4444 33345666677777776654344432100 00 11555555555544455441
Q ss_pred CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcC---EEeecCCCC
Q 012933 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLR---WLELSGLHK 331 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~---~L~l~~~~~ 331 (453)
+..+..+++|+.|+++++. ++.+ +....+++|+ +|++++++.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~l----------------------------------p~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMF----------------------------------PDLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSC----------------------------------CCCTTCCBCCSEEEEEEESCTT
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccc----------------------------------cccccccccccccEEECCCCcc
Confidence 2344455555555555532 1111 1123455666 999999878
Q ss_pred cceecccCCcccccCCCcc-ceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc-CCcceEEEcccch
Q 012933 332 VQHLWKENDESNKAFANLE-SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL-VNLGRMMIADCKM 409 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~~ 409 (453)
++.++...| ..+++|+ .|++++ +.++.+|......++|++|+++++..++.++.. .+..+ ++|++|+++++.
T Consensus 143 l~~i~~~~~---~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~- 216 (239)
T 2xwt_C 143 MTSIPVNAF---QGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS- 216 (239)
T ss_dssp CCEECTTTT---TTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC-
T ss_pred hhhcCcccc---cchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc-
Confidence 999998877 8999999 999999 578899887655589999999987678888764 45677 999999998865
Q ss_pred hHHHHhhccCCccCCCceeccccchhhhhhHHH
Q 012933 410 IEQIIQLQVGEEAKDCNVFKELSCETMSKNEDL 442 (453)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 442 (453)
++.+ +.. .|+.|+.|++++...|
T Consensus 217 l~~l--------~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 217 VTAL--------PSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCC--------CCT--TCTTCSEEECTTC---
T ss_pred cccC--------Chh--HhccCceeeccCccCC
Confidence 2211 111 6888999988877653
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=2.4e-13 Score=136.70 Aligned_cols=239 Identities=14% Similarity=0.091 Sum_probs=134.8
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+++|++|+++++ .++.++.. ....+++|++|++++|. ++..+. +..+++|++|+++++. +.
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~---------------l~ 93 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY---------------VQ 93 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGG-GGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE---------------EE
T ss_pred CCCccEEEeeCC-cCCCCCHH-HHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc---------------CC
Confidence 456666666663 34444332 14456677777776654 443322 5556666666666431 11
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
.+ ...++|++|+++++. +..++.. .+++|++|+++++. +++..+. .+..+++|+.|+++++ .+...
T Consensus 94 ~l----~~~~~L~~L~L~~N~-l~~~~~~------~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~ 159 (487)
T 3oja_A 94 EL----LVGPSIETLHAANNN-ISRVSCS------RGQGKKNIYLANNK-ITMLRDL-DEGCRSRVQYLDLKLN-EIDTV 159 (487)
T ss_dssp EE----EECTTCCEEECCSSC-CCCEEEC------CCSSCEEEECCSSC-CCSGGGB-CGGGGSSEEEEECTTS-CCCEE
T ss_pred CC----CCCCCcCEEECcCCc-CCCCCcc------ccCCCCEEECCCCC-CCCCCch-hhcCCCCCCEEECCCC-CCCCc
Confidence 11 122566777776665 4333332 25677777777753 4444332 3566677777777664 23322
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
+... ... .+++|++|+++++. ++.+ .....+++|+.|+++++. ++.++
T Consensus 160 ~~~~-------l~~-~l~~L~~L~Ls~N~-l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~------------------ 207 (487)
T 3oja_A 160 NFAE-------LAA-SSDTLEHLNLQYNF-IYDV----KGQVVFAKLKTLDLSSNK-LAFMG------------------ 207 (487)
T ss_dssp EGGG-------GGG-GTTTCCEEECTTSC-CCEE----ECCCCCTTCCEEECCSSC-CCEEC------------------
T ss_pred ChHH-------Hhh-hCCcccEEecCCCc-cccc----cccccCCCCCEEECCCCC-CCCCC------------------
Confidence 1100 000 12556666665553 3333 112235566666665532 22221
Q ss_pred ccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCc-cccCCCCCCCCCCCEE
Q 012933 298 SEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKL-QKLVPPSWHLENLEAL 376 (453)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L 376 (453)
+.+..+++|+.|++++| .++.++... ..+++|+.|++++++-. ..+|..+..++.|+.+
T Consensus 208 ---------------~~~~~l~~L~~L~Ls~N-~l~~lp~~l----~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 208 ---------------PEFQSAAGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp ---------------GGGGGGTTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ---------------HhHcCCCCccEEEecCC-cCcccchhh----ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 22346789999999998 688887653 78899999999996533 2566667778888888
Q ss_pred ecccC
Q 012933 377 EVSKC 381 (453)
Q Consensus 377 ~l~~c 381 (453)
.+..+
T Consensus 268 ~~~~~ 272 (487)
T 3oja_A 268 AKQTV 272 (487)
T ss_dssp HHHHH
T ss_pred ecccc
Confidence 87533
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=2.2e-14 Score=137.24 Aligned_cols=253 Identities=12% Similarity=0.098 Sum_probs=160.4
Q ss_pred cccceEEeccccchhhhhcccccccccccccc--cccceeeccccccccccccccccccCCCcceEeecCCCCccc--cc
Q 012933 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAF--SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT--FS 102 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~ 102 (453)
..+++++++++. +. +..+.. + ++++.|++.+. .+...... ...+++|++|++++|. +.. ++
T Consensus 47 ~~~~~l~l~~~~-~~--~~~~~~--------~~~~~l~~L~l~~n-~l~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~ 111 (336)
T 2ast_B 47 SLWQTLDLTGKN-LH--PDVTGR--------LLSQGVIAFRCPRS-FMDQPLAE--HFSPFRVQHMDLSNSV-IEVSTLH 111 (336)
T ss_dssp TTSSEEECTTCB-CC--HHHHHH--------HHHTTCSEEECTTC-EECSCCCS--CCCCBCCCEEECTTCE-ECHHHHH
T ss_pred hhheeecccccc-CC--HHHHHh--------hhhccceEEEcCCc-cccccchh--hccCCCCCEEEccCCC-cCHHHHH
Confidence 347888888863 32 222222 4 68888888873 34444333 4467889999998875 542 66
Q ss_pred cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc--cccCCCCCcCccCCCcEE
Q 012933 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLARL 180 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L 180 (453)
..+..+++|++|++++|. .....+..+..+++|++|++++|..+.+ ++... ..+++|++|
T Consensus 112 ~~~~~~~~L~~L~L~~~~--------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----~~~~~L~~L 173 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLR--------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDEL 173 (336)
T ss_dssp HHHTTBCCCSEEECTTCB--------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----HHCTTCCEE
T ss_pred HHHhhCCCCCEEeCcCcc--------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----hcCCCCCEE
Confidence 666778889999988652 1123445566688999999988854543 22211 457889999
Q ss_pred EecCCCCccccCchhHHhhcC-CCcEEEeccCc-cchh--hhcccccccccCCCCCCCCccceeeeccCCCcceeccCCC
Q 012933 181 VVDDCTNMSSAIPANLLRCLN-NLQWLEVRNCD-SIEE--VLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTG 256 (453)
Q Consensus 181 ~l~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 256 (453)
++++|..+++......+..++ +|++|++++|. .+.+ ++. ... .+++|++|++.+|..+++. ...
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---------~~~-~~~~L~~L~l~~~~~l~~~--~~~ 241 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---------LVR-RCPNLVHLDLSDSVMLKND--CFQ 241 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---------HHH-HCTTCSEEECTTCTTCCGG--GGG
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---------HHh-hCCCCCEEeCCCCCcCCHH--HHH
Confidence 999886665432234577888 99999998885 3432 111 001 2388999999888765542 234
Q ss_pred cccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccC-CCcCEEeecCCCCccee
Q 012933 257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSF-PRLRWLELSGLHKVQHL 335 (453)
Q Consensus 257 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~l 335 (453)
.+..+++|+.|++++|..+....... +..+++|+.|++++| +. + ..+..+ .+++.|+++++ .++..
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~~--i~--~------~~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI--VP--D------GTLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS--SC--T------TCHHHHHHHSTTSEESCC-CSCCT
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEeccCc--cC--H------HHHHHHHhhCcceEEecc-cCccc
Confidence 67788999999999987554433222 667889999999887 22 1 011122 23566667666 56554
Q ss_pred cc
Q 012933 336 WK 337 (453)
Q Consensus 336 ~~ 337 (453)
..
T Consensus 309 ~~ 310 (336)
T 2ast_B 309 AR 310 (336)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=1.7e-12 Score=120.54 Aligned_cols=209 Identities=16% Similarity=0.199 Sum_probs=122.9
Q ss_pred CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
++|++|+++++. ++.. +...+..+++|++|+++++ .+..++.. ... .+++|++|++.++. ++.+ .
T Consensus 28 ~~l~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------~~~-~l~~L~~L~L~~n~-l~~~--~ 92 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHL-GSYSFFSFPELQVLDLSRC-EIQTIEDG--------AYQ-SLSHLSTLILTGNP-IQSL--A 92 (276)
T ss_dssp TTCCEEECTTCC-CCEE-CTTTTTTCTTCSEEECTTC-CCCEECTT--------TTT-TCTTCCEEECTTCC-CCEE--C
T ss_pred CCccEEECCCCc-cccc-CHhHhccccCCcEEECCCC-cCCccCHH--------Hcc-CCcCCCEEECCCCc-cCcc--C
Confidence 456666666643 4433 2223556666666666664 33332110 011 12566666666553 3333 1
Q ss_pred CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 334 (453)
+..+..+++|+.|+++++. +..++... +..+++|+.|+++++..-.+. ....+..+++|++|++++| .++.
T Consensus 93 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-----l~~~~~~l~~L~~L~Ls~N-~l~~ 163 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETN-LASLENFP--IGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN-KIQS 163 (276)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCSTTCC--CTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSS-CCCE
T ss_pred hhhhcCCccccEEECCCCC-ccccCchh--cccCCCCCEEECcCCccceec-----CchhhccCCCCCEEECCCC-CCCc
Confidence 2445666777777776643 33333322 556667777777665321100 0123456788888888888 6777
Q ss_pred ecccCCcccccCCCcc----ceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEc-----
Q 012933 335 LWKENDESNKAFANLE----SLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA----- 405 (453)
Q Consensus 335 l~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~----- 405 (453)
++...+ ..+++|+ +|++++ +.++.++.......+|++|++++ +.++.++.. ....+++|++|+++
T Consensus 164 ~~~~~~---~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 164 IYCTDL---RVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDG-IFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECGGGG---HHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTT-TTTTCCSCCEEECCSSCBC
T ss_pred CCHHHh---hhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHh-HhcccccccEEEccCCccc
Confidence 766655 4555555 777877 56777777666666888888877 457777653 44677888888887
Q ss_pred -ccchhHHH
Q 012933 406 -DCKMIEQI 413 (453)
Q Consensus 406 -~C~~l~~~ 413 (453)
+|+.++.+
T Consensus 238 c~c~~l~~l 246 (276)
T 2z62_A 238 CSCPRIDYL 246 (276)
T ss_dssp CCTTTTHHH
T ss_pred ccCCchHHH
Confidence 56666543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=1.6e-12 Score=121.71 Aligned_cols=198 Identities=14% Similarity=0.040 Sum_probs=128.1
Q ss_pred cCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccc
Q 012933 144 IGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQ 223 (453)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 223 (453)
..+++++++++.+.. +..++... .+++++|+++++. ++.. +...+..+++|+.|+++++ .++.++..
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~~------~~~l~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPDL------PKDTTILHLSENL-LYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD--- 73 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSCC------CTTCCEEECTTSC-CSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC---
T ss_pred cccCCccEEECCCCC-CCcCCCCC------CCCCCEEEcCCCc-CCcc-CHHHhhcCCCCCEEECCCC-ccCcccCC---
Confidence 345777777777654 55555433 5789999999864 5544 3345788999999999885 35444321
Q ss_pred ccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccc
Q 012933 224 NADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFL 303 (453)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 303 (453)
..+++|++|++.++. ++.+ +..+..+++|+.|+++++ .++.++... +..+++|+.|+++++.--.
T Consensus 74 --------~~l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~l~~N-~l~~l~~~~--~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 74 --------GTLPVLGTLDLSHNQ-LQSL---PLLGQTLPALTVLDVSFN-RLTSLPLGA--LRGLGELQELYLKGNELKT 138 (290)
T ss_dssp --------SCCTTCCEEECCSSC-CSSC---CCCTTTCTTCCEEECCSS-CCCCCCSST--TTTCTTCCEEECTTSCCCC
T ss_pred --------CCCCcCCEEECCCCc-CCcC---chhhccCCCCCEEECCCC-cCcccCHHH--HcCCCCCCEEECCCCCCCc
Confidence 133888999988763 4443 355677888899988875 455555433 5666677777777652211
Q ss_pred ccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 304 LAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 304 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
+. ...+..+++|+.|+++++ .++.++.+.| ..+++|+.|++++ +.++.+|..+...++|+++.+++
T Consensus 139 ~~------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~---~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 139 LP------PGLLTPTPKLEKLSLANN-NLTELPAGLL---NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CC------TTTTTTCTTCCEEECTTS-CCSCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred cC------hhhcccccCCCEEECCCC-cCCccCHHHh---cCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCC
Confidence 10 011235667777777776 5666666665 5677777777777 45667777666667777777765
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1.1e-12 Score=126.25 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=147.9
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.+++++|+++++ +++.+ +.+.+.++++|++|+++++.-.+.++.. ....+ +++.++...++.+++.+
T Consensus 29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--------~f~~L-~~l~~~l~~~~N~l~~l-- 95 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEAD--------VFSNL-PKLHEIRIEKANNLLYI-- 95 (350)
T ss_dssp CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTT--------SBCSC-TTCCEEEEEEETTCCEE--
T ss_pred CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChh--------Hhhcc-hhhhhhhcccCCccccc--
Confidence 467777777774 35544 4445677777888888776443333210 00112 55566555556666665
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccccccc-CCCcCEEeecCCCCc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVS-FPRLRWLELSGLHKV 332 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-l~~L~~L~l~~~~~l 332 (453)
.+..+..+++|+.|+++++. +..++... ......+..+++.++..+.... ...... ...++.|+++++ .+
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~-l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~-----~~~f~~~~~~l~~L~L~~N-~i 166 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTG-IKHLPDVH--KIHSLQKVLLDIQDNINIHTIE-----RNSFVGLSFESVILWLNKN-GI 166 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEEC-CSSCCCCT--TCCBSSCEEEEEESCTTCCEEC-----TTSSTTSBSSCEEEECCSS-CC
T ss_pred Cchhhhhccccccccccccc-cccCCchh--hcccchhhhhhhcccccccccc-----ccchhhcchhhhhhccccc-cc
Confidence 24566778888888887753 34444332 3334456666666554433110 001112 246889999998 78
Q ss_pred ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhH
Q 012933 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIE 411 (453)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~ 411 (453)
+.++...| ..++|+++.+.+++.++.+|.. +..+++|++|++++ ++++.+|.. .+.+|+.|.+.++.+++
T Consensus 167 ~~i~~~~f----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~----~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 167 QEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY----GLENLKKLRARSTYNLK 237 (350)
T ss_dssp CEECTTSS----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS----SCTTCCEEECTTCTTCC
T ss_pred cCCChhhc----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh----hhccchHhhhccCCCcC
Confidence 99988875 5678999999999999999975 68899999999988 689998763 35788889888888775
Q ss_pred HHHhhccCCccCCCceeccccchhhhhh
Q 012933 412 QIIQLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
++ +....++.|+.+++...
T Consensus 238 ~l---------P~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KL---------PTLEKLVALMEASLTYP 256 (350)
T ss_dssp CC---------CCTTTCCSCCEEECSCH
T ss_pred cC---------CCchhCcChhhCcCCCC
Confidence 44 34556777777776543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=3.3e-12 Score=118.21 Aligned_cols=197 Identities=18% Similarity=0.188 Sum_probs=102.6
Q ss_pred CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccccc
Q 012933 148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK 227 (453)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 227 (453)
+.+++++++.. +..++... .+++++|+++++. ++.. +...+..+++|++|+++++ .+..++.
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~------~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~i~~-------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI------PADTKKLDLQSNK-LSSL-PSKAFHRLTKLRLLYLNDN-KLQTLPA-------- 78 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC------CTTCSEEECCSSC-CSCC-CTTSSSSCTTCCEEECCSS-CCSCCCT--------
T ss_pred CCCEEEccCCC-CCccCCCC------CCCCCEEECcCCC-CCee-CHHHhcCCCCCCEEECCCC-ccCeeCh--------
Confidence 35566665543 44444322 4678888888764 4444 3334667777788877764 2333221
Q ss_pred CCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc
Q 012933 228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ 307 (453)
Q Consensus 228 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 307 (453)
..-..+++|++|++.++. ++.+ .+..+..+++|+.|+++++. ++.++... +.
T Consensus 79 -~~~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~--------------------- 130 (270)
T 2o6q_A 79 -GIFKELKNLETLWVTDNK-LQAL--PIGVFDQLVNLAELRLDRNQ-LKSLPPRV--FD--------------------- 130 (270)
T ss_dssp -TTTSSCTTCCEEECCSSC-CCCC--CTTTTTTCSSCCEEECCSSC-CCCCCTTT--TT---------------------
T ss_pred -hhhcCCCCCCEEECCCCc-CCcC--CHhHcccccCCCEEECCCCc-cCeeCHHH--hC---------------------
Confidence 000112667777776553 3332 12345566677777776643 33333221 33
Q ss_pred ccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCccccc
Q 012933 308 VQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 308 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~ 386 (453)
.+++|++|+++++ .++.++...+ ..+++|++|++++ +.++.++.. +..+++|++|++++ +.++.
T Consensus 131 ---------~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~ 195 (270)
T 2o6q_A 131 ---------SLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN-NQLKR 195 (270)
T ss_dssp ---------TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS-SCCSC
T ss_pred ---------cCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCC-CcCCc
Confidence 4455555555555 4555554444 4556666666665 345555442 44556666666655 34555
Q ss_pred ccCCCcccccCCcceEEEcc
Q 012933 387 LLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 387 l~~~~~~~~l~~L~~L~i~~ 406 (453)
++.. .+..+++|++|++++
T Consensus 196 ~~~~-~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 196 VPEG-AFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCTT-TTTTCTTCCEEECCS
T ss_pred CCHH-HhccccCCCEEEecC
Confidence 4432 234455666666654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=1.1e-12 Score=123.98 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=39.4
Q ss_pred ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF 101 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 101 (453)
..+.+++|++|++++| .++.++ .+.. +++|++|+++++ .++.++. ...+++|++|++++|. ++.+
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~--------l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE-GVQY--------LNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC
T ss_pred cHHHcCCcCEEEeeCC-CccCch-hhhc--------cCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc
Confidence 3344556666666654 344443 2222 555666666553 3333322 3345555666655543 4443
Q ss_pred ccCccCCCCcceEEecc
Q 012933 102 SHGILSTPKLHKVQVTE 118 (453)
Q Consensus 102 ~~~~~~~~~L~~L~l~~ 118 (453)
+ .+..+++|++|++++
T Consensus 101 ~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp G-GGTTCTTCCEEECTT
T ss_pred h-hhcCCCCCCEEECCC
Confidence 3 344455555555553
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=2.6e-12 Score=121.33 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=120.7
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA 225 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 225 (453)
+++|++|++.++. +..++. + ..+++|++|++++|. ++...+ +..+++|++|+++++. +..++.
T Consensus 40 l~~L~~L~l~~~~-i~~l~~---~--~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------ 102 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIEG---V--QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVSA------ 102 (308)
T ss_dssp HHTCCEEECTTSC-CCCCTT---G--GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCGG------
T ss_pred cCCcCEEEeeCCC-ccCchh---h--hccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCchh------
Confidence 5678888887775 444331 1 457888888888763 444422 6778888888888763 444321
Q ss_pred ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933 226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA 305 (453)
Q Consensus 226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 305 (453)
.. .+++|++|++.++. ++.+ ..+..+++|+.|+++++. +..++. +..+++|+.|+++++.--.
T Consensus 103 ----~~-~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~l~~-- 165 (308)
T 1h6u_A 103 ----IA-GLQSIKTLDLTSTQ-ITDV----TPLAGLSNLQVLYLDLNQ-ITNISP----LAGLTNLQYLSIGNAQVSD-- 165 (308)
T ss_dssp ----GT-TCTTCCEEECTTSC-CCCC----GGGTTCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSSCCCC--
T ss_pred ----hc-CCCCCCEEECCCCC-CCCc----hhhcCCCCCCEEECCCCc-cCcCcc----ccCCCCccEEEccCCcCCC--
Confidence 11 22778888887764 4443 236778888888887763 333322 4556677777777662211
Q ss_pred ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc
Q 012933 306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI 385 (453)
Q Consensus 306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 385 (453)
++.+..+++|++|++++| .+++++. + ..+++|++|++++| .++.++. +..+++|++|++++ +.++
T Consensus 166 ------~~~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~-N~i~ 230 (308)
T 1h6u_A 166 ------LTPLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN-QTIT 230 (308)
T ss_dssp ------CGGGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE-EEEE
T ss_pred ------ChhhcCCCCCCEEECCCC-ccCcChh--h---cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccC-Ceee
Confidence 112456677777777777 4555543 2 57777777777773 4555553 56677777777766 3455
Q ss_pred ccc
Q 012933 386 NLL 388 (453)
Q Consensus 386 ~l~ 388 (453)
..+
T Consensus 231 ~~~ 233 (308)
T 1h6u_A 231 NQP 233 (308)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=1.2e-13 Score=130.79 Aligned_cols=208 Identities=19% Similarity=0.139 Sum_probs=109.9
Q ss_pred CCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhc-----CCCcEEEeccCccchhhhc
Q 012933 145 GFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVRNCDSIEEVLH 219 (453)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~~~~ 219 (453)
.+++|++|+++++.-...++... + ...+++|++|+++++. ++.. + ..+..+ ++|++|+++++. +..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-~-~~~l~~L~~L~Ls~N~-l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-L-EATGPDLNILNLRNVS-WATR-D-AWLAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-S-SCCSCCCSEEEEESCB-CSSS-S-SHHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCcccchhHHHH-H-HhcCCCccEEEccCCC-Ccch-h-HHHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 57888888888876222333321 1 1447888888888864 5544 3 235555 677777777652 332211
Q ss_pred ccccccccCCCCCCCCccceeeeccCCCcceeccC-CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccc
Q 012933 220 LEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF-TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTS 298 (453)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~ 298 (453)
. ....+ ++|++|++.++.-...+... ...+..+++|+.|+++++. ++.++..
T Consensus 167 ~--------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----------------- 219 (312)
T 1wwl_A 167 E--------QVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV----------------- 219 (312)
T ss_dssp T--------TCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH-----------------
T ss_pred H--------HhccC-CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH-----------------
Confidence 0 11112 55566665554422211000 0012445555555555542 1111000
Q ss_pred cccccccccccccccccccCCCcCEEeecCCCCcceec-ccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEe
Q 012933 299 EENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW-KENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALE 377 (453)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 377 (453)
...-...+++|++|+++++ .++... ...+ ..+++|++|++++ +.++.+|..+. ++|++|+
T Consensus 220 ------------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 220 ------------CSALAAARVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLD 280 (312)
T ss_dssp ------------HHHHHHTTCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEE
T ss_pred ------------HHHHHhcCCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCC-CccChhhhhcc--CCceEEE
Confidence 0000124567777777776 444433 2222 4567777777777 45667766554 6777777
Q ss_pred cccCcccccccCCCcccccCCcceEEEcccc
Q 012933 378 VSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 378 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
+++ ++++.+|. ...+++|++|++++.+
T Consensus 281 Ls~-N~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 281 LSY-NRLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCS-SCCCSCCC---TTTSCEEEEEECTTCT
T ss_pred CCC-CCCCCChh---HhhCCCCCEEeccCCC
Confidence 766 56666643 4566777777776654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=7.2e-12 Score=116.02 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=97.5
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
..+++|++|.+.++. ++.. ..+..+++|++|+++++. +..+.. .. .+++|++|++.++. ++.+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~---~~l~~l~~L~~L~l~~n~-l~~~~~----------l~-~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV---QGIQYLPNVRYLALGGNK-LHDISA----------LK-ELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC---TTGGGCTTCCEEECTTSC-CCCCGG----------GT-TCTTCCEEECTTSC-CCCC
T ss_pred ccccceeeeeeCCCC-cccc---cccccCCCCcEEECCCCC-CCCchh----------hc-CCCCCCEEECCCCc-cCcc
Confidence 457888888888864 4332 236778888888888763 333321 11 22778888887763 4443
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
.+..+..+++|+.|+++++. ++.++... +..+++|+.|+++++.--.+. ...+..+++|++|++++| .
T Consensus 101 --~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 101 --PNGVFDKLTNLKELVLVENQ-LQSLPDGV--FDKLTNLTYLNLAHNQLQSLP------KGVFDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp --CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-C
T ss_pred --ChhHhcCCcCCCEEECCCCc-CCccCHHH--hccCCCCCEEECCCCccCccC------HHHhccCccCCEEECCCC-C
Confidence 22346677888888887754 34444332 445556666666554211100 011234555666666555 4
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC 381 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 381 (453)
++.++...+ ..+++|+.|++++| .++.++.. +..+++|++|+++++
T Consensus 169 l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 169 LQSLPEGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCHHHh---cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 555544444 45556666666553 34444432 345555666665553
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=5.9e-12 Score=116.49 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=107.6
Q ss_pred cccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceec
Q 012933 257 NIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLW 336 (453)
Q Consensus 257 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 336 (453)
.+..+++|+.|+++++ .++.++... +..+++|+.|+++++.--.+. ...+..+++|++|+++++ .++.++
T Consensus 56 ~~~~l~~L~~L~l~~n-~l~~i~~~~--~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n-~l~~~~ 125 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDN-KLQTLPAGI--FKELKNLETLWVTDNKLQALP------IGVFDQLVNLAELRLDRN-QLKSLP 125 (270)
T ss_dssp SSSSCTTCCEEECCSS-CCSCCCTTT--TSSCTTCCEEECCSSCCCCCC------TTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred HhcCCCCCCEEECCCC-ccCeeChhh--hcCCCCCCEEECCCCcCCcCC------HhHcccccCCCEEECCCC-ccCeeC
Confidence 3445555555555553 233333322 344555666655554211100 012346789999999998 688888
Q ss_pred ccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHHh
Q 012933 337 KENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQIIQ 415 (453)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~ 415 (453)
...+ ..+++|++|++++ +.++.++.. +..+++|++|++++ +.++.++.. .+..+++|++|+++++. ++.+
T Consensus 126 ~~~~---~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~-- 196 (270)
T 2o6q_A 126 PRVF---DSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEG-AFDKLTELKTLKLDNNQ-LKRV-- 196 (270)
T ss_dssp TTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEECCSSC-CSCC--
T ss_pred HHHh---CcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecC-CcCcEeChh-HhccCCCcCEEECCCCc-CCcC--
Confidence 7777 8999999999999 468888875 67899999999988 568887663 45678999999999984 3221
Q ss_pred hccCCccCCCceeccccchhhhhhH
Q 012933 416 LQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
.+..+..++.|+.++++++|
T Consensus 197 -----~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 197 -----PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----CTTTTTTCTTCCEEECCSSC
T ss_pred -----CHHHhccccCCCEEEecCCC
Confidence 12234567888899888876
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.35 E-value=6.6e-12 Score=116.51 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=104.4
Q ss_pred CcccccceEEeccccchhhhhc-ccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIR-HVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
+..++|++|+++++ .++.++. .+.. +++|++|+++++ .++.++... ...+++|++|+++++. ++.++
T Consensus 25 ~l~~~l~~L~ls~n-~l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 92 (276)
T 2z62_A 25 NLPFSTKNLDLSFN-PLRHLGSYSFFS--------FPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLA 92 (276)
T ss_dssp SSCTTCCEEECTTC-CCCEECTTTTTT--------CTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEEC
T ss_pred CCCCCccEEECCCC-cccccCHhHhcc--------ccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCCc-cCccC
Confidence 33567888888886 5666654 3333 778888888874 455554332 4567788888888764 44433
Q ss_pred -cCccCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcc--cccCCCCCcCccCCCc
Q 012933 103 -HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKE--IWHGQALPVSFFNNLA 178 (453)
Q Consensus 103 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~ 178 (453)
..+..+++|++|+++++.- ..+. ..+..+++|++|+++++. +.. ++... ..+++|+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l---------------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~ 152 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNL---------------ASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLE 152 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCC---------------CCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCC
T ss_pred hhhhcCCccccEEECCCCCc---------------cccCchhcccCCCCCEEECcCCc-cceecCchhh----ccCCCCC
Confidence 4456677777777775421 1111 123445666666666654 322 11111 3356666
Q ss_pred EEEecCCCCccccCchhHHhhcCCCc----EEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQ----WLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
+|+++++. ++.. +...+..+++|+ .|+++++ .+..++. ..... .+|++|++.++. ++.++
T Consensus 153 ~L~Ls~N~-l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~---------~~~~~-~~L~~L~L~~n~-l~~~~-- 216 (276)
T 2z62_A 153 HLDLSSNK-IQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP---------GAFKE-IRLKELALDTNQ-LKSVP-- 216 (276)
T ss_dssp EEECCSSC-CCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT---------TSSCS-CCEEEEECCSSC-CSCCC--
T ss_pred EEECCCCC-CCcC-CHHHhhhhhhccccceeeecCCC-cccccCc---------cccCC-CcccEEECCCCc-eeecC--
Confidence 66666653 3333 222244444444 5555553 2222211 00001 356666665543 33321
Q ss_pred CCcccCCCCccEEeeecC
Q 012933 255 TGNIIELPELQHLTIQNC 272 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c 272 (453)
+..+..+++|+.|+++++
T Consensus 217 ~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTTTTCCSCCEEECCSS
T ss_pred HhHhcccccccEEEccCC
Confidence 223455566666666543
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.34 E-value=2.5e-11 Score=113.46 Aligned_cols=197 Identities=16% Similarity=0.095 Sum_probs=147.0
Q ss_pred ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (453)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 252 (453)
.++++++++++++ +++.+ |..+ .++++.|+++++. +..+... ... .+++|++|++.++. ++.++
T Consensus 8 ~l~~l~~l~~~~~-~l~~i-p~~~---~~~l~~L~L~~N~-l~~~~~~--------~~~-~l~~L~~L~L~~n~-l~~~~ 71 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTAL-PPDL---PKDTTILHLSENL-LYTFSLA--------TLM-PYTRLTQLNLDRAE-LTKLQ 71 (290)
T ss_dssp CSTTCCEEECTTS-CCSSC-CSCC---CTTCCEEECTTSC-CSEEEGG--------GGT-TCTTCCEEECTTSC-CCEEE
T ss_pred ccCCccEEECCCC-CCCcC-CCCC---CCCCCEEEcCCCc-CCccCHH--------Hhh-cCCCCCEEECCCCc-cCccc
Confidence 4788999999984 46655 4332 3689999999864 4443220 111 23899999998864 66653
Q ss_pred cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (453)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 332 (453)
....+++|+.|+++++ .++.++.. +..+++|+.|+++++.--.+. ...+..+++|++|+++++ .+
T Consensus 72 ----~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~l~~l~------~~~~~~l~~L~~L~L~~N-~l 136 (290)
T 1p9a_G 72 ----VDGTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNRLTSLP------LGALRGLGELQELYLKGN-EL 136 (290)
T ss_dssp ----CCSCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSCCCCCC------SSTTTTCTTCCEEECTTS-CC
T ss_pred ----CCCCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCcCcccC------HHHHcCCCCCCEEECCCC-CC
Confidence 2378999999999986 45566654 677889999999987332211 123467899999999999 78
Q ss_pred ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEccc
Q 012933 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADC 407 (453)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C 407 (453)
+.++.+.| ..+++|+.|++++ +.++.+|.. +..+++|++|++++ +.++.+|.. ....++|+++++.+.
T Consensus 137 ~~~~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~--~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 137 KTLPPGLL---TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKG--FFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCCTTTT---TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTTCCCSEEECCSC
T ss_pred CccChhhc---ccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChh--hcccccCCeEEeCCC
Confidence 88888877 7899999999999 678899876 46799999999987 678888763 445679999999843
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=114.95 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=55.1
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESL 396 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 396 (453)
.+++|++|+++++ .++......+.....+++|++|++++ +.++.+|..+. ++|++|++++ ++++.++. +..+
T Consensus 222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~---~~~l 293 (310)
T 4glp_A 222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQ---PDEL 293 (310)
T ss_dssp HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCC---TTSC
T ss_pred cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCch---hhhC
Confidence 4578888888887 45555222221112347888888887 46777777653 7888888876 56776644 4566
Q ss_pred CCcceEEEcccc
Q 012933 397 VNLGRMMIADCK 408 (453)
Q Consensus 397 ~~L~~L~i~~C~ 408 (453)
++|++|++++.+
T Consensus 294 ~~L~~L~L~~N~ 305 (310)
T 4glp_A 294 PEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCEECSSTT
T ss_pred CCccEEECcCCC
Confidence 888888887654
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=1e-10 Score=108.27 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=113.5
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA 225 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 225 (453)
+++|++|.+.++. +..++. + ..+++|++|+++++. ++.. ..+..+++|++|+++++ .++.++..
T Consensus 40 l~~L~~L~l~~~~-i~~~~~---l--~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n-~l~~~~~~----- 103 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQG---I--QYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGN-QLQSLPNG----- 103 (272)
T ss_dssp HTTCCEEECTTSC-CCCCTT---G--GGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTS-CCCCCCTT-----
T ss_pred ccceeeeeeCCCC-cccccc---c--ccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCC-ccCccChh-----
Confidence 5677777777765 333221 1 347778888887764 4432 23667777888887775 33333210
Q ss_pred ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933 226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA 305 (453)
Q Consensus 226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 305 (453)
... .+++|++|++.++. ++.+ .+..+..+++|+.|++++| .++.++... +..+++|+.|+++++.--.+.
T Consensus 104 ---~~~-~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 104 ---VFD-KLTNLKELVLVENQ-LQSL--PDGVFDKLTNLTYLNLAHN-QLQSLPKGV--FDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp ---TTT-TCTTCCEEECTTSC-CCCC--CTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCC
T ss_pred ---Hhc-CCcCCCEEECCCCc-CCcc--CHHHhccCCCCCEEECCCC-ccCccCHHH--hccCccCCEEECCCCCcCccC
Confidence 011 22677777777764 4433 2234667777888888776 445554433 566777788877776321100
Q ss_pred ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
...++.+++|++|++++| .++.++...+ ..+++|+.|++++++- .+.+++|+.+.++.
T Consensus 174 ------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 174 ------EGVFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI 231 (272)
T ss_dssp ------TTTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCB-------CCCTTTTHHHHHHH
T ss_pred ------HHHhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCc-------cccCcHHHHHHHHH
Confidence 011345677888888777 5666666555 6777788888877532 13356677776655
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.25 E-value=1e-10 Score=106.83 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=54.4
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
..+++|++|+++++ .++.++...+ ..+++|+.|++++ +.++.++. .+..+++|++|++++ +.++.++.. ...
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~ 176 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPSGVF---DRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG-AFD 176 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTT
T ss_pred cccCCCCEEEcCCC-cCCCcChhHh---ccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHH-HHh
Confidence 35567777777776 5666665555 5677777777777 35666665 356667777777766 456665542 344
Q ss_pred ccCCcceEEEcccc
Q 012933 395 SLVNLGRMMIADCK 408 (453)
Q Consensus 395 ~l~~L~~L~i~~C~ 408 (453)
.+++|++|++.+++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 56777777776543
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=3.7e-11 Score=113.45 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=111.7
Q ss_pred CccceeeeccCCCcceeccC-CCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNF-TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 313 (453)
++|++|++.++.--...+.. ...+..+++|+.|+++++.- ...+... +..+++|+.|+++++.-.... .+. ...
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~ 191 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQ--VRAFPALTSLDLSDNPGLGER-GLM-AAL 191 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTS--CCCCTTCCEEECCSCTTCHHH-HHH-TTS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHH--hccCCCCCEEECCCCCCccch-hhh-HHH
Confidence 56666666654311110000 01223566777777766543 3333332 556667777777766321100 000 001
Q ss_pred ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCC---CCCCEEecccCcccccccC
Q 012933 314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHL---ENLEALEVSKCHGLINLLT 389 (453)
Q Consensus 314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l---~~L~~L~l~~c~~l~~l~~ 389 (453)
..+.+++|++|++++| .++.++.........+++|++|++++ +.++.+ |..+..+ ++|++|++++ ++++.+|.
T Consensus 192 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~ 268 (310)
T 4glp_A 192 CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPK 268 (310)
T ss_dssp CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCS
T ss_pred hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhh
Confidence 1246789999999998 56655432110115789999999999 457665 6665555 7999999977 67888876
Q ss_pred CCcccccCCcceEEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 390 FSTSESLVNLGRMMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 390 ~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
. .+ ++|++|+++++.-- ..+....++.|+.|++++++
T Consensus 269 ~-~~---~~L~~L~Ls~N~l~----------~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 G-LP---AKLRVLDLSSNRLN----------RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CC---SCCSCEECCSCCCC----------SCCCTTSCCCCSCEECSSTT
T ss_pred h-hc---CCCCEEECCCCcCC----------CCchhhhCCCccEEECcCCC
Confidence 3 32 79999999988631 11234567999999999875
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=7.9e-11 Score=103.40 Aligned_cols=152 Identities=11% Similarity=0.110 Sum_probs=98.8
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
.+.+++|++|+++++ .++.++ .+.. +++|++|+++++ .++.++ ....+++|++|++++|.--...+
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~-~l~~--------l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLT-GIEY--------AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCT-TGGG--------CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhhcCCccEEeccCC-CccChH-HHhc--------CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccC
Confidence 356788888888886 566666 4444 788888888886 444443 24568888888888865333356
Q ss_pred cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEe
Q 012933 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVV 182 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l 182 (453)
..+..+++|++|+++++.- ....+..+..+++|++|+++++..+..++. . ..+++|++|++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i--------------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l----~~l~~L~~L~l 166 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAH--------------DDSILTKINTLPKVNSIDLSYNGAITDIMP-L----KTLPELKSLNI 166 (197)
T ss_dssp CCCTTCTTCCEEECCSSBC--------------BGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G----GGCSSCCEEEC
T ss_pred hhhcCCCCCCEEEecCCcc--------------CcHhHHHHhhCCCCCEEEccCCCCccccHh-h----cCCCCCCEEEC
Confidence 6677788888888885421 112344555677788888777754544431 1 34677777777
Q ss_pred cCCCCccccCchhHHhhcCCCcEEEeccC
Q 012933 183 DDCTNMSSAIPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 183 ~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (453)
++|. +++. + .+..+++|+.|+++++
T Consensus 167 ~~n~-i~~~-~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 167 QFDG-VHDY-R--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TTBC-CCCC-T--TGGGCSSCCEEEECBC
T ss_pred CCCC-CcCh-H--HhccCCCCCEEEeeCc
Confidence 7764 4433 2 3666777777777664
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=1.6e-12 Score=126.88 Aligned_cols=290 Identities=14% Similarity=0.077 Sum_probs=162.8
Q ss_pred CccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC--CCc-ccccCCC-C--C
Q 012933 97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP--HLK-EIWHGQA-L--P 170 (453)
Q Consensus 97 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~-~~~~~~~-l--~ 170 (453)
.+..++..+..+++|++|++++|.- . ......+...+..+++|++|+++++. .+. .++.+.. + .
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i------~----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTI------G----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEE------C----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccEEECCCCCC------C----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3456777777889999999996521 0 11223455567788999999999874 121 1111100 0 0
Q ss_pred cCccCCCcEEEecCCCCcccc---CchhHHhhcCCCcEEEeccCccchhhhcccccccccC-----CCCCCCCccceeee
Q 012933 171 VSFFNNLARLVVDDCTNMSSA---IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKE-----HRGPLFPKLYGLRL 242 (453)
Q Consensus 171 ~~~l~~L~~L~l~~c~~l~~~---~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L 242 (453)
...+++|++|+++++. +... .....+..+++|++|++++|. +.......-...+.. ... ..++|++|.+
T Consensus 90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~-~~~~L~~L~L 166 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAK-NAPPLRSIIC 166 (386)
T ss_dssp HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHH-TCCCCCEEEC
T ss_pred HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcc-cCCCCcEEEC
Confidence 1347899999999875 4331 012347889999999999974 332211000000000 000 0068999999
Q ss_pred ccCCCcce--eccCCCcccCCCCccEEeeecCCCCce-----eccCCcccccCCCccccccccccccccccccccccccc
Q 012933 243 IDLPKLKR--FCNFTGNIIELPELQHLTIQNCPDMET-----FISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEK 315 (453)
Q Consensus 243 ~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 315 (453)
.++. ++. ++.....+..+++|+.|++++|. ++. +.... +..+++|+.|+++++.--.. +.......+
T Consensus 167 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~--g~~~l~~~l 240 (386)
T 2ca6_A 167 GRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHL--GSSALAIAL 240 (386)
T ss_dssp CSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHH--HHHHHHHHG
T ss_pred CCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcH--HHHHHHHHH
Confidence 8875 321 11111245678899999999874 331 11112 56677888888888742100 000001124
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcc-c--ccCCCccceeeccCCCccc-----cCCCC-CCCCCCCEEecccCccccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDES-N--KAFANLESLEISECSKLQK-----LVPPS-WHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~-~--~~l~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~ 386 (453)
..+++|++|++++| .++......++. . ..+++|++|++++| .++. +|..+ .++++|++|+++++ .+..
T Consensus 241 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 241 KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 56788888888888 454432111110 0 23788888888885 4554 66655 55788888888774 4444
Q ss_pred cc--CCCcccccCCcceEEEcccc
Q 012933 387 LL--TFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 387 l~--~~~~~~~l~~L~~L~i~~C~ 408 (453)
.. ...+...++.++..++..-.
T Consensus 318 ~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 318 EDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp TSHHHHHHHHHHHHHTCCEECCCC
T ss_pred chhHHHHHHHHhhhcCcchhhhcc
Confidence 32 12233445566655554433
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=1.9e-10 Score=107.51 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=121.2
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
..+++|++|++++|. ++.. + .+..+++|+.|+++++ .+..++.. . .+++|++|++.++. ++.+
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~-~--~~~~l~~L~~L~L~~n-~l~~~~~l----------~-~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV-Q--GIQYLPNVTKLFLNGN-KLTDIKPL----------A-NLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCCGGG----------T-TCTTCCEEECCSSC-CCCG
T ss_pred hhcCcccEEEccCCC-cccC-h--hHhcCCCCCEEEccCC-ccCCCccc----------c-cCCCCCEEECCCCc-CCCC
Confidence 458899999999874 4444 2 3778999999999886 44444321 1 23889999998864 5543
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
..+..+++|+.|++++|. +..++ . +..+++|+.|+++++.--. ++.+..+++|++|++++| .
T Consensus 106 ----~~l~~l~~L~~L~L~~n~-i~~~~--~--l~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~L~~N-~ 167 (291)
T 1h6t_A 106 ----SSLKDLKKLKSLSLEHNG-ISDIN--G--LVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDN-Q 167 (291)
T ss_dssp ----GGGTTCTTCCEEECTTSC-CCCCG--G--GGGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSS-C
T ss_pred ----hhhccCCCCCEEECCCCc-CCCCh--h--hcCCCCCCEEEccCCcCCc--------chhhccCCCCCEEEccCC-c
Confidence 347888999999998864 44442 1 5667788888888763221 134567788888888887 5
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL 388 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 388 (453)
++.++. + ..+++|+.|+++++ .+++++. +..+++|+.|++++ +.+...+
T Consensus 168 l~~~~~--l---~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~-n~i~~~~ 216 (291)
T 1h6t_A 168 ISDIVP--L---AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFS-QECLNKP 216 (291)
T ss_dssp CCCCGG--G---TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEE-EEEECCC
T ss_pred cccchh--h---cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcC-CcccCCc
Confidence 666654 3 67888888888884 6777654 66788888888876 4455443
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=1.3e-10 Score=101.99 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=23.9
Q ss_pred cCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933 345 AFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 345 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (453)
.+++|++|++++|..+++++ .+..+++|++|++++ +.+++++ ....+++|++|++++
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~---~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR---GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT---TGGGCSSCCEEEECB
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH---HhccCCCCCEEEeeC
Confidence 44444444444433344433 233444444444444 2333332 123344455555444
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=9.9e-11 Score=109.45 Aligned_cols=167 Identities=14% Similarity=0.234 Sum_probs=86.0
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+++|+.|+++++ .++.++ ....+++|++|++++| +++.++. +..+++|++|+++++. +.
T Consensus 45 l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~---------------l~ 103 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQ---GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK---------------VK 103 (291)
T ss_dssp HHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC---------------CC
T ss_pred cCcccEEEccCC-CcccCh---hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc---------------CC
Confidence 445555555542 233221 1334555555555554 2443333 4445555555555331 11
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
.+ ..+..+++|++|+++++. +..++. + ..+++|++|+++++. ++.. ..+..+++|+.|+++++ .+.++
T Consensus 104 ~~-~~l~~l~~L~~L~L~~n~-i~~~~~---l--~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N-~l~~~ 171 (291)
T 1h6t_A 104 DL-SSLKDLKKLKSLSLEHNG-ISDING---L--VHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN-QISDI 171 (291)
T ss_dssp CG-GGGTTCTTCCEEECTTSC-CCCCGG---G--GGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCCC
T ss_pred CC-hhhccCCCCCEEECCCCc-CCCChh---h--cCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCC-ccccc
Confidence 11 123445666666666554 333221 1 346677777777653 3333 23666777777777765 34433
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCC
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCP 273 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 273 (453)
+.. . .+++|++|++.++ .++++ ..+..+++|+.|++++++
T Consensus 172 ~~l----------~-~l~~L~~L~L~~N-~i~~l----~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 172 VPL----------A-GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGG----------T-TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEEEEEEE
T ss_pred hhh----------c-CCCccCEEECCCC-cCCCC----hhhccCCCCCEEECcCCc
Confidence 221 1 2267777777766 34544 246677888888887753
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.14 E-value=9.7e-12 Score=121.24 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=11.4
Q ss_pred cCCCcCEEeecCCC
Q 012933 317 SFPRLRWLELSGLH 330 (453)
Q Consensus 317 ~l~~L~~L~l~~~~ 330 (453)
.+|+|++|++++|+
T Consensus 301 ~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 301 KMPDLLFLELNGNR 314 (386)
T ss_dssp HCTTCCEEECTTSB
T ss_pred cCCCceEEEccCCc
Confidence 47899999998883
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.1e-10 Score=119.94 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=100.9
Q ss_pred hcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCC
Q 012933 18 FAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPN 97 (453)
Q Consensus 18 ~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 97 (453)
....+...+++|+.|++++| .+..++. +.. +++|+.|+++++ .++.++. ...+++|+.|++++| .
T Consensus 34 ~~~~~~~~L~~L~~L~l~~n-~i~~l~~-l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~ 98 (605)
T 1m9s_A 34 TDAVTQNELNSIDQIIANNS-DIKSVQG-IQY--------LPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-K 98 (605)
T ss_dssp TSEECHHHHTTCCCCBCTTC-CCCCCTT-GGG--------CTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-C
T ss_pred ccccchhcCCCCCEEECcCC-CCCCChH-Hcc--------CCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-C
Confidence 34445566777777777776 4665542 333 777777777773 3444433 456777777777776 3
Q ss_pred ccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933 98 MKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL 177 (453)
Q Consensus 98 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L 177 (453)
+..++ .+..+++|+.|+++++.- ..+ ..+..+++|+.|+++++. +..++. + ..+++|
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l---------------~~l-~~l~~l~~L~~L~Ls~N~-l~~l~~---l--~~l~~L 155 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGI---------------SDI-NGLVHLPQLESLYLGNNK-ITDITV---L--SRLTKL 155 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCC---------------CCC-GGGGGCTTCSEEECCSSC-CCCCGG---G--GSCTTC
T ss_pred CCCCh-hhccCCCCCEEEecCCCC---------------CCC-ccccCCCccCEEECCCCc-cCCchh---h--cccCCC
Confidence 55554 456677777777775421 111 224456777777777665 333311 1 346677
Q ss_pred cEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933 178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (453)
Q Consensus 178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 246 (453)
++|++++|. +.+..+ +..+++|+.|++++| .+.+++.. . .+++|+.|+|.+++
T Consensus 156 ~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~l----------~-~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 156 DTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRAL----------A-GLKNLDVLELFSQE 208 (605)
T ss_dssp SEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGGG----------T-TCTTCSEEECCSEE
T ss_pred CEEECcCCc-CCCchh---hccCCCCCEEECcCC-CCCCChHH----------c-cCCCCCEEEccCCc
Confidence 777777653 444323 566677777777665 33333211 1 12666676666553
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=2.7e-10 Score=117.01 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=125.2
Q ss_pred CccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCccee
Q 012933 172 SFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRF 251 (453)
Q Consensus 172 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 251 (453)
..+++|++|+++++. +... + .+..+++|+.|+++++ .+..++... .+++|++|.|.++. ++.+
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l-~--~l~~l~~L~~L~Ls~N-~l~~~~~l~-----------~l~~L~~L~Ls~N~-l~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV-Q--GIQYLPNVTKLFLNGN-KLTDIKPLT-----------NLKNLGWLFLDENK-IKDL 102 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC-T--TGGGCTTCCEEECTTS-CCCCCGGGG-----------GCTTCCEEECCSSC-CCCC
T ss_pred hcCCCCCEEECcCCC-CCCC-h--HHccCCCCCEEEeeCC-CCCCChhhc-----------cCCCCCEEECcCCC-CCCC
Confidence 458899999999875 4444 2 3788999999999986 344443211 23889999998874 5553
Q ss_pred ccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCC
Q 012933 252 CNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHK 331 (453)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 331 (453)
..+..+++|+.|++++|. +..++ . +..+++|+.|+++++.--. ++.+..+++|+.|++++| .
T Consensus 103 ----~~l~~l~~L~~L~Ls~N~-l~~l~--~--l~~l~~L~~L~Ls~N~l~~--------l~~l~~l~~L~~L~Ls~N-~ 164 (605)
T 1m9s_A 103 ----SSLKDLKKLKSLSLEHNG-ISDIN--G--LVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDN-Q 164 (605)
T ss_dssp ----TTSTTCTTCCEEECTTSC-CCCCG--G--GGGCTTCSEEECCSSCCCC--------CGGGGSCTTCSEEECCSS-C
T ss_pred ----hhhccCCCCCEEEecCCC-CCCCc--c--ccCCCccCEEECCCCccCC--------chhhcccCCCCEEECcCC-c
Confidence 367889999999998875 44432 2 6677889999998873221 134567889999999888 5
Q ss_pred cceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccC
Q 012933 332 VQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLT 389 (453)
Q Consensus 332 l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 389 (453)
+..++. + ..+++|+.|++++| .++.++ .+..+++|+.|+++++ .+...|.
T Consensus 165 l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 165 ISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 666654 3 78889999999985 577764 4677889999999774 4555443
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=4.7e-12 Score=122.42 Aligned_cols=253 Identities=11% Similarity=-0.051 Sum_probs=131.7
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCC--CcCccC-CCcEEEecCCCCccccCchhHHhhc-----CCCcEEEec
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQAL--PVSFFN-NLARLVVDDCTNMSSAIPANLLRCL-----NNLQWLEVR 209 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l--~~~~l~-~L~~L~l~~c~~l~~~~~~~~l~~l-----~~L~~L~l~ 209 (453)
.++......++|++|+++++. +....... + ....++ +|++|++++| .++...+ ..+..+ ++|++|+++
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVE-LIQAFANTPASVTSLNLSGN-SLGFKNS-DELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HHHHHHTCCTTCCEEECCSS-CGGGSCH-HHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHHhCCCCceEEEccCCC-CChHHHHH-HHHHHHhCCCceeEEECcCC-CCCHHHH-HHHHHHHhccCCCccEEECc
Confidence 344444445669999999887 54433200 0 012356 8999999987 4554423 335554 889999998
Q ss_pred cCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc--CCCcccC-CCCccEEeeecCCCCceeccCC--cc
Q 012933 210 NCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN--FTGNIIE-LPELQHLTIQNCPDMETFISNS--VV 284 (453)
Q Consensus 210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~--~~ 284 (453)
+|. +.+.....-...+ ....++|++|++.++. ++.... ....+.. .++|+.|++++|. +++..... ..
T Consensus 89 ~n~-l~~~~~~~l~~~l----~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~ 161 (362)
T 3goz_A 89 GNF-LSYKSSDELVKTL----AAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI 161 (362)
T ss_dssp SSC-GGGSCHHHHHHHH----HTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH
T ss_pred CCc-CChHHHHHHHHHH----HhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH
Confidence 874 4432211000000 0111678999998875 443210 0011333 3589999998864 33211110 00
Q ss_pred cccCC-Cccccccccccccccccccccccc-ccccC-CCcCEEeecCCCCcceecccCCc-cccc-CCCccceeeccCCC
Q 012933 285 HVTTD-NKEPQKLTSEENFLLAHQVQPLFD-EKVSF-PRLRWLELSGLHKVQHLWKENDE-SNKA-FANLESLEISECSK 359 (453)
Q Consensus 285 ~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~l~~l~~~~~~-~~~~-l~~L~~L~l~~c~~ 359 (453)
+...+ +|+.|++++|.--..+ ...+. .+... ++|++|++++| .+++.....++ .... .++|++|++++| .
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKN---CAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-C
T ss_pred HhcCCccccEeeecCCCCchhh---HHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-C
Confidence 22233 7888888876321100 00000 12234 47888888887 45552211110 0022 357888888884 4
Q ss_pred ccccCC-----CCCCCCCCCEEecccCc-------ccccccCCCcccccCCcceEEEcccc
Q 012933 360 LQKLVP-----PSWHLENLEALEVSKCH-------GLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 360 l~~l~~-----~~~~l~~L~~L~l~~c~-------~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
+++.+. .+..+++|++|++++|. .+..++. ....+++|++|++++.+
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--TSTTCCEEEEECTTSCB
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH--HhccCCceEEEecCCCc
Confidence 544332 34566778888887753 1222221 23355677777777665
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.06 E-value=8.2e-10 Score=100.79 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=99.0
Q ss_pred cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-Cc
Q 012933 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GI 105 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~ 105 (453)
.+.+++++++. .++.+|..+. ++++.|++++ ..++.+... ....+++|++|+++++. ++.++. .+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~----------~~l~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP----------ADTEKLDLQS-TGLATLSDA-TFRGLTKLTWLNLDYNQ-LQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC----------TTCCEEECTT-SCCCCCCTT-TTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred CCCeEEecCCC-CccccCCCCC----------CCCCEEEccC-CCcCccCHh-HhcCcccCCEEECCCCc-CCccCHhHh
Confidence 34566777764 5666665422 3677777776 334444332 24456777777777753 444433 34
Q ss_pred cCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecC
Q 012933 106 LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDD 184 (453)
Q Consensus 106 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 184 (453)
..+++|++|+++++. +..++ ..+..+++|++|+++++. +..++... + ..+++|++|++++
T Consensus 80 ~~l~~L~~L~L~~n~---------------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 80 DDLTELGTLGLANNQ---------------LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV-F--DRLTKLKELRLNT 140 (251)
T ss_dssp TTCTTCCEEECTTSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCS
T ss_pred ccCCcCCEEECCCCc---------------ccccChhHhcccCCCCEEEcCCCc-CCCcChhH-h--ccCCcccEEECcC
Confidence 557777777777532 11111 223456777777777764 44443322 2 3467788888877
Q ss_pred CCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933 185 CTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (453)
Q Consensus 185 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 246 (453)
+ .++.. +...+..+++|+.|+++++ .+..++.. ... .+++|++|++.+++
T Consensus 141 N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------~~~-~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 141 N-QLQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPHG--------AFD-RLGKLQTITLFGNQ 190 (251)
T ss_dssp S-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT--------TTT-TCTTCCEEECCSCC
T ss_pred C-cCCcc-CHHHcCcCcCCCEEECCCC-cCCccCHH--------HHh-CCCCCCEEEeeCCc
Confidence 5 45544 3344667778888888775 34333220 111 22677788777654
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=8.7e-11 Score=113.46 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=43.5
Q ss_pred CCcCEEeecCCCCcceecccCCc-ccccCCCccceeeccCC-------CccccCCCCCCCCCCCEEecccCccccc
Q 012933 319 PRLRWLELSGLHKVQHLWKENDE-SNKAFANLESLEISECS-------KLQKLVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~l~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
++|++|++++| .+++.+...+. ....+++|+.|++++|. .+..++..+..+++|+.|++++ +.+.+
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~ 298 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHP 298 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCG
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCC
Confidence 58888888888 56655432111 11577889999998864 1334555666788888999977 44554
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=1.1e-09 Score=100.82 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=100.1
Q ss_pred cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (453)
Q Consensus 19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 98 (453)
.+++...+.+++.++++++ .++.++ .+.. +++|++|+++++ .++.++ ....+++|++|++++| ++
T Consensus 11 ~~~pd~~l~~l~~l~l~~~-~i~~~~-~~~~--------l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i 75 (263)
T 1xeu_A 11 QVFPDPGLANAVKQNLGKQ-SVTDLV-SQKE--------LSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QI 75 (263)
T ss_dssp HHCCSHHHHHHHHHHHTCS-CTTSEE-CHHH--------HTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CC
T ss_pred HhCCCHHHHHHHHHHhcCC-Cccccc-chhh--------cCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-cc
Confidence 3455555666666666664 455554 2233 667777777764 455443 2456677777777775 35
Q ss_pred cccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCc
Q 012933 99 KTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLA 178 (453)
Q Consensus 99 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~ 178 (453)
+.++. +..+++|++|+++++. +..++. ... ++|++|+++++. +..++. + ..+++|+
T Consensus 76 ~~~~~-l~~l~~L~~L~L~~N~---------------l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~---l--~~l~~L~ 131 (263)
T 1xeu_A 76 SDLSP-LKDLTKLEELSVNRNR---------------LKNLNG-IPS-ACLSRLFLDNNE-LRDTDS---L--IHLKNLE 131 (263)
T ss_dssp CCCGG-GTTCSSCCEEECCSSC---------------CSCCTT-CCC-SSCCEEECCSSC-CSBSGG---G--TTCTTCC
T ss_pred CCChh-hccCCCCCEEECCCCc---------------cCCcCc-ccc-CcccEEEccCCc-cCCChh---h--cCccccc
Confidence 55554 5667777777777542 111111 111 677777777765 444321 1 3477888
Q ss_pred EEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCC
Q 012933 179 RLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLP 246 (453)
Q Consensus 179 ~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 246 (453)
+|+++++. +++. + .+..+++|+.|+++++ .+.++. ... .+++|++|++.+++
T Consensus 132 ~L~Ls~N~-i~~~-~--~l~~l~~L~~L~L~~N-~i~~~~----------~l~-~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 132 ILSIRNNK-LKSI-V--MLGFLSKLEVLDLHGN-EITNTG----------GLT-RLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTSC-CCBC-G--GGGGCTTCCEEECTTS-CCCBCT----------TST-TCCCCCEEEEEEEE
T ss_pred EEECCCCc-CCCC-h--HHccCCCCCEEECCCC-cCcchH----------Hhc-cCCCCCEEeCCCCc
Confidence 88888753 4443 2 3667788888888775 333331 111 22778888887654
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=3.9e-09 Score=93.24 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccc
Q 012933 233 LFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312 (453)
Q Consensus 233 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~ 312 (453)
.+++|++|++.++. ++.+ .+..+..+++|+.|+++++ .++.++... +..+++|+.|+++++.--.+. .
T Consensus 26 ~~~~l~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~------~ 93 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSL--PNGVFDELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTNQLQSLP------N 93 (208)
T ss_dssp CCTTCSEEECCSSC-CCCC--CTTTTTTCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSCCCCCC------T
T ss_pred CCCCCcEEEcCCCc-cCcC--ChhhhcccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCCcCCccC------H
Confidence 34678888887763 4443 2234667788888888775 344444332 444555555555554211100 0
Q ss_pred cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 313 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
..+..+++|++|+++++ .++.++...+ ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus 94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hHhcCccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecC
Confidence 11234455555555555 4444444433 4555555555555 234444443 34455555555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=3.2e-09 Score=95.46 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
..+++|++|+++++ .++.++...| ..+++|+.|++++ +.++.+|..+..+++|++|++++ ++++.++. .....
T Consensus 85 ~~l~~L~~L~Ls~N-~l~~l~~~~~---~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~ 157 (229)
T 3e6j_A 85 DSLTQLTVLDLGTN-QLTVLPSAVF---DRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPH-GAFDR 157 (229)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCT-TTTTT
T ss_pred ccCCCcCEEECCCC-cCCccChhHh---CcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCH-HHHhC
Confidence 35677777777777 6677766665 6777888888877 56777777777778888888866 56776655 24456
Q ss_pred cCCcceEEEccc
Q 012933 396 LVNLGRMMIADC 407 (453)
Q Consensus 396 l~~L~~L~i~~C 407 (453)
+++|++|++.+.
T Consensus 158 l~~L~~L~l~~N 169 (229)
T 3e6j_A 158 LSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEEeeCC
Confidence 777888877653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=3.1e-09 Score=102.42 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=94.2
Q ss_pred CccceeeeccCCCcceeccCCCccc-CCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNII-ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 313 (453)
+.++.|+|++. .++.++ +..+. .+++|+.|+++++ .+..++... +..+++|+.|+++++.--.+. ..
T Consensus 39 ~~l~~L~Ls~N-~l~~l~--~~~~~~~l~~L~~L~L~~N-~i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~------~~ 106 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLR--AEWTPTRLTNLHSLLLSHN-HLNFISSEA--FVPVPNLRYLDLSSNHLHTLD------EF 106 (361)
T ss_dssp TTCSEEECCSS-CCCEEC--TTSSSSCCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSSCCCEEC------TT
T ss_pred CCCCEEECCCC-CCCccC--hhhhhhcccccCEEECCCC-cCCccChhh--ccCCCCCCEEECCCCcCCcCC------HH
Confidence 34555555543 244431 22333 5566666666553 344444333 555556666666654211100 01
Q ss_pred ccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCC----CCCCCCCEEecccCcccccccC
Q 012933 314 EKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPS----WHLENLEALEVSKCHGLINLLT 389 (453)
Q Consensus 314 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~~ 389 (453)
.+..+++|++|+++++ .++.+....| ..+++|+.|++++ +.++.+|... ..+++|++|++++ ++++.++.
T Consensus 107 ~~~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~ 180 (361)
T 2xot_A 107 LFSDLQALEVLLLYNN-HIVVVDRNAF---EDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL 180 (361)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCH
T ss_pred HhCCCcCCCEEECCCC-cccEECHHHh---CCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCH
Confidence 2346788889999888 6788777777 7889999999998 5788887653 5689999999977 67887764
Q ss_pred CCcccccCC--cceEEEcccc
Q 012933 390 FSTSESLVN--LGRMMIADCK 408 (453)
Q Consensus 390 ~~~~~~l~~--L~~L~i~~C~ 408 (453)
. ....++. ++.|++.+.+
T Consensus 181 ~-~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 181 T-DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp H-HHHHSCHHHHTTEECCSSC
T ss_pred H-HhhhccHhhcceEEecCCC
Confidence 2 3344555 4778887633
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.95 E-value=9.3e-09 Score=104.61 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=107.1
Q ss_pred CCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccc
Q 012933 147 RDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNAD 226 (453)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 226 (453)
.+++.|+++++. +..++... +++|++|+++++. ++.+ | ..+++|+.|+++++ .++.++.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l------~~~L~~L~Ls~N~-l~~i-p----~~l~~L~~L~Ls~N-~l~~ip~------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL------PPQITVLEITQNA-LISL-P----ELPASLEYLDACDN-RLSTLPE------- 117 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC------CTTCSEEECCSSC-CSCC-C----CCCTTCCEEECCSS-CCSCCCC-------
T ss_pred CCccEEEeCCCC-CCccCHhH------cCCCCEEECcCCC-Cccc-c----cccCCCCEEEccCC-CCCCcch-------
Confidence 477888887765 55444332 5778888888763 5443 3 34678888888775 3444321
Q ss_pred cCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccc
Q 012933 227 KEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAH 306 (453)
Q Consensus 227 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 306 (453)
...+|++|++.++. ++.++ . .+++|+.|+++++. ++.+|. .+++|+.|+++++.--.
T Consensus 118 ------l~~~L~~L~Ls~N~-l~~lp---~---~l~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~L~~--- 174 (571)
T 3cvr_A 118 ------LPASLKHLDVDNNQ-LTMLP---E---LPALLEYINADNNQ-LTMLPE------LPTSLEVLSVRNNQLTF--- 174 (571)
T ss_dssp ------CCTTCCEEECCSSC-CSCCC---C---CCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSCCSC---
T ss_pred ------hhcCCCEEECCCCc-CCCCC---C---cCccccEEeCCCCc-cCcCCC------cCCCcCEEECCCCCCCC---
Confidence 11378888887753 44442 2 57788888887754 444433 23467777777653111
Q ss_pred cccccccccccCCCcCEEeecCCCCcceecccCCcc--cccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC
Q 012933 307 QVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES--NKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC 381 (453)
Q Consensus 307 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 381 (453)
++.+. ++|++|++++| .++.++. ++. ....+.|+.|++++ +.++.+|..+..+++|+.|+++++
T Consensus 175 -----lp~l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 175 -----LPELP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp -----CCCCC--TTCCEEECCSS-CCSSCCC--CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred -----cchhh--CCCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 11211 67788888777 5666665 210 00112227778877 467777776666778888888764
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=3.7e-09 Score=107.52 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=99.6
Q ss_pred ccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccC
Q 012933 28 SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILS 107 (453)
Q Consensus 28 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 107 (453)
+++.|+++++ .++.+|..+ +++|++|++++ +.++.++ ..+++|+.|++++| +++.+|. +..
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~-N~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL----------PPQITVLEITQ-NALISLP-----ELPASLEYLDACDN-RLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC----------CTTCSEEECCS-SCCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred CccEEEeCCC-CCCccCHhH----------cCCCCEEECcC-CCCcccc-----cccCCCCEEEccCC-CCCCcch-hhc
Confidence 6777888776 466666532 35677777777 3455554 24677778887776 4666665 333
Q ss_pred CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCC
Q 012933 108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTN 187 (453)
Q Consensus 108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 187 (453)
+|++|+++++. +..++. .+++|++|+++++. +..++. .+++|++|+++++.
T Consensus 121 --~L~~L~Ls~N~---------------l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~- 171 (571)
T 3cvr_A 121 --SLKHLDVDNNQ---------------LTMLPE---LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNNQ- 171 (571)
T ss_dssp --TCCEEECCSSC---------------CSCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-
T ss_pred --CCCEEECCCCc---------------CCCCCC---cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCCC-
Confidence 77777777531 112222 35677777777765 433332 25677777777653
Q ss_pred ccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEE
Q 012933 188 MSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHL 267 (453)
Q Consensus 188 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L 267 (453)
++.+ |. +. ++|+.|+++++ .++.++.... .... ..+.|++|++.++ .++.+ +..+..+++|+.|
T Consensus 172 L~~l-p~--l~--~~L~~L~Ls~N-~L~~lp~~~~-----~L~~-~~~~L~~L~Ls~N-~l~~l---p~~l~~l~~L~~L 235 (571)
T 3cvr_A 172 LTFL-PE--LP--ESLEALDVSTN-LLESLPAVPV-----RNHH-SEETEIFFRCREN-RITHI---PENILSLDPTCTI 235 (571)
T ss_dssp CSCC-CC--CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCC---CGGGGGSCTTEEE
T ss_pred CCCc-ch--hh--CCCCEEECcCC-CCCchhhHHH-----hhhc-ccccceEEecCCC-cceec---CHHHhcCCCCCEE
Confidence 4443 32 22 67777777764 3444322000 0000 0022266666654 24433 3445556666666
Q ss_pred eeecCC
Q 012933 268 TIQNCP 273 (453)
Q Consensus 268 ~l~~c~ 273 (453)
++++++
T Consensus 236 ~L~~N~ 241 (571)
T 3cvr_A 236 ILEDNP 241 (571)
T ss_dssp ECCSSS
T ss_pred EeeCCc
Confidence 666654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=6.7e-09 Score=95.40 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=121.8
Q ss_pred ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (453)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 252 (453)
.+.+++.+.++++ .+++.. .+..+++|+.|+++++ .+.+++... .+++|++|++.++. ++.++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~---~~~~l~~L~~L~l~~n-~i~~l~~l~-----------~l~~L~~L~L~~N~-i~~~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV---SQKELSGVQNFNGDNS-NIQSLAGMQ-----------FFTNLKELHLSHNQ-ISDLS 79 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE---CHHHHTTCSEEECTTS-CCCCCTTGG-----------GCTTCCEEECCSSC-CCCCG
T ss_pred HHHHHHHHHhcCC-Cccccc---chhhcCcCcEEECcCC-CcccchHHh-----------hCCCCCEEECCCCc-cCCCh
Confidence 4566777777764 344442 3778999999999997 566553211 23899999998874 65542
Q ss_pred cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (453)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 332 (453)
.+..+++|+.|+++++. ++.++... . ++|+.|+++++.--. ++.+..+++|++|+++++ .+
T Consensus 80 ----~l~~l~~L~~L~L~~N~-l~~l~~~~----~-~~L~~L~L~~N~l~~--------~~~l~~l~~L~~L~Ls~N-~i 140 (263)
T 1xeu_A 80 ----PLKDLTKLEELSVNRNR-LKNLNGIP----S-ACLSRLFLDNNELRD--------TDSLIHLKNLEILSIRNN-KL 140 (263)
T ss_dssp ----GGTTCSSCCEEECCSSC-CSCCTTCC----C-SSCCEEECCSSCCSB--------SGGGTTCTTCCEEECTTS-CC
T ss_pred ----hhccCCCCCEEECCCCc-cCCcCccc----c-CcccEEEccCCccCC--------ChhhcCcccccEEECCCC-cC
Confidence 28889999999999864 55554332 2 689999998873221 234567889999999998 57
Q ss_pred ceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCccccccc
Q 012933 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLL 388 (453)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 388 (453)
++++ .+ ..+++|+.|++++ +.++.+ ..+..+++|+.|++++ +.+...+
T Consensus 141 ~~~~--~l---~~l~~L~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 141 KSIV--ML---GFLSKLEVLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp CBCG--GG---GGCTTCCEEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred CCCh--HH---ccCCCCCEEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence 7764 23 7889999999998 467766 5677889999999977 4455543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.91 E-value=1.7e-08 Score=89.07 Aligned_cols=123 Identities=13% Similarity=0.052 Sum_probs=64.1
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE 314 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 314 (453)
++|++|++.++ .++.+ .+..+..+++|+.|+++++. ++.++... +..+++|+.|+++++.--.+. ...
T Consensus 52 ~~L~~L~l~~n-~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~------~~~ 119 (208)
T 2o6s_A 52 TSLTQLYLGGN-KLQSL--PNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--FDKLTQLKELALNTNQLQSLP------DGV 119 (208)
T ss_dssp TTCSEEECCSS-CCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTT
T ss_pred ccCcEEECCCC-ccCcc--ChhhcCCCCCcCEEECCCCc-CCccCHhH--hcCccCCCEEEcCCCcCcccC------HhH
Confidence 56666666654 23332 12334566666666666643 33443332 455666666666655221100 011
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
+..+++|++|+++++ .++.++...+ ..+++|++|++++++- ...+++|+.|.++.
T Consensus 120 ~~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSCCB-------CCCTTTTHHHHHHH
T ss_pred hccCCcCCEEECCCC-ccceeCHHHh---ccCCCccEEEecCCCe-------ecCCCCHHHHHHHH
Confidence 345566666666666 4555555444 5666666666666421 12345566666554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=1.2e-08 Score=91.02 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=69.1
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE 314 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 314 (453)
++|++|++.+.. ++.++ +..+..+++|+.|+++++. +..+.... +.
T Consensus 32 ~~l~~L~l~~n~-i~~i~--~~~~~~l~~L~~L~Ls~N~-i~~~~~~~--~~---------------------------- 77 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIP--PGAFSPYKKLRRIDLSNNQ-ISELAPDA--FQ---------------------------- 77 (220)
T ss_dssp TTCCEEECCSSC-CCEEC--TTSSTTCTTCCEEECCSSC-CCEECTTT--TT----------------------------
T ss_pred cCCCEEECCCCc-CCCcC--HhHhhCCCCCCEEECCCCc-CCCcCHHH--hh----------------------------
Confidence 567777776653 44442 2355667777777776643 33332221 33
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCcc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTS 393 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 393 (453)
.+++|++|+++++ .++.++...| ..+++|+.|++++ +.++.++. .+..+++|++|++++ +.++.++.. ..
T Consensus 78 --~l~~L~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~ 148 (220)
T 2v9t_B 78 --GLRSLNSLVLYGN-KITELPKSLF---EGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKG-TF 148 (220)
T ss_dssp --TCSSCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TT
T ss_pred --CCcCCCEEECCCC-cCCccCHhHc---cCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHH-HH
Confidence 4455555555555 4555555544 5556666666666 34444432 355556666666655 445555432 23
Q ss_pred cccCCcceEEEcc
Q 012933 394 ESLVNLGRMMIAD 406 (453)
Q Consensus 394 ~~l~~L~~L~i~~ 406 (453)
..+++|++|++.+
T Consensus 149 ~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 149 SPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCTTCCEEECCS
T ss_pred hCCCCCCEEEeCC
Confidence 3455666666654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.87 E-value=3.3e-08 Score=88.19 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=98.0
Q ss_pred cEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCCCc
Q 012933 178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGN 257 (453)
Q Consensus 178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 257 (453)
+.++.++. +++.+ |.. + .++++.|+++++ .+..++.. ... .+++|++|++.++. ++.+ .+..
T Consensus 14 ~~v~c~~~-~l~~i-P~~-l--~~~l~~L~l~~n-~i~~i~~~--------~~~-~l~~L~~L~Ls~N~-i~~~--~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGK-GLTEI-PTN-L--PETITEIRLEQN-TIKVIPPG--------AFS-PYKKLRRIDLSNNQ-ISEL--APDA 75 (220)
T ss_dssp TEEECTTS-CCSSC-CSS-C--CTTCCEEECCSS-CCCEECTT--------SST-TCTTCCEEECCSSC-CCEE--CTTT
T ss_pred CEEEcCCC-CcCcC-CCc-c--CcCCCEEECCCC-cCCCcCHh--------Hhh-CCCCCCEEECCCCc-CCCc--CHHH
Confidence 56677664 46655 433 2 368999999985 45554320 111 23899999998874 5554 3467
Q ss_pred ccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecc
Q 012933 258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWK 337 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 337 (453)
+..+++|+.|+++++ .++.++... + ..+++|++|+++++ .++.++.
T Consensus 76 ~~~l~~L~~L~Ls~N-~l~~l~~~~--f------------------------------~~l~~L~~L~L~~N-~l~~~~~ 121 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGN-KITELPKSL--F------------------------------EGLFSLQLLLLNAN-KINCLRV 121 (220)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTT--T------------------------------TTCTTCCEEECCSS-CCCCCCT
T ss_pred hhCCcCCCEEECCCC-cCCccCHhH--c------------------------------cCCCCCCEEECCCC-CCCEeCH
Confidence 889999999999985 344444331 2 24567777777776 5666666
Q ss_pred cCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933 338 ENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC 381 (453)
Q Consensus 338 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 381 (453)
..| ..+++|+.|++++ +.++.++.. +..+++|++|++++.
T Consensus 122 ~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 122 DAF---QDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HHc---CCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 666 6777888888877 556666653 666778888888663
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=2.6e-08 Score=94.58 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=54.4
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCcc-ceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLE-SLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
.+++|+.+++.+. ++.++...| .++++|+ .+.+.+ .++.++. .+.++++|+++.+.+ ++++.++.. .+.
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~aF---~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~-aF~ 318 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQRVF---SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDE-LFG 318 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTTTT---TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTT-TTC
T ss_pred CCCCCCEEECCcc--cceehHHHh---hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchh-hhc
Confidence 4567777777664 777777777 7777887 887777 5667765 466778888888754 567777653 455
Q ss_pred ccCCcceEE
Q 012933 395 SLVNLGRMM 403 (453)
Q Consensus 395 ~l~~L~~L~ 403 (453)
++++|++++
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 667777765
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.84 E-value=4.5e-08 Score=87.25 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=62.8
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE 314 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 314 (453)
+.+++|++.+.. ++.+. ....+..+++|+.|+++++. ++.++... +..+++|+.|+++++.--.+. ...
T Consensus 32 ~~~~~L~L~~N~-l~~~~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~------~~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLE-ATGIFKKLPQLRKINFSNNK-ITDIEEGA--FEGASGVNEILLTSNRLENVQ------HKM 100 (220)
T ss_dssp TTCSEEECCSSC-CCEEC-CCCCGGGCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCCCC------GGG
T ss_pred CCCCEEEcCCCc-CCccC-chhhhccCCCCCEEECCCCc-CCEECHHH--hCCCCCCCEEECCCCccCccC------HhH
Confidence 445666665542 44431 12335667777777776643 44444332 444445555555443211100 011
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEeccc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSK 380 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~ 380 (453)
+..+++|++|+++++ .++.+....| ..+++|+.|++++ +.++.+ |..+..+++|++|++++
T Consensus 101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 101 FKGLESLKTLMLRSN-RITCVGNDSF---IGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp GTTCSSCCEEECTTS-CCCCBCTTSS---TTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred hcCCcCCCEEECCCC-cCCeECHhHc---CCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecC
Confidence 234455555555555 4555444444 4555555555555 344444 33445555555555554
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=3.4e-09 Score=90.20 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=32.7
Q ss_pred CccceeeeccCCCcc--eeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 235 PKLYGLRLIDLPKLK--RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
++|++|++.++. ++ .+ +..+..+++|+.|++++|. ++.+ .. +..+++|+.|+++++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i---~~~~~~l~~L~~L~l~~n~-l~~~--~~--~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKI---EGLTAEFVNLEFLSLINVG-LISV--SN--LPKLPKLKKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCB-CBTTBC---SSCCGGGGGCCEEEEESSC-CCCC--SS--CCCCSSCCEEEEESC
T ss_pred ccCCEEECCCCC-CChhhH---HHHHHhCCCCCEEeCcCCC-CCCh--hh--hccCCCCCEEECcCC
Confidence 678888888765 43 33 3446777888888887765 4333 11 334444444444443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=2.4e-09 Score=91.16 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=38.5
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCc--hhHHhhcCCCcEEEeccCc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRNCD 212 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~~~ 212 (453)
+++|++|+++++. +..++....+ ..+++|++|+++++. ++...+ ...+..+++|+.|+++++.
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPL--KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGG--SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCc-cCcchhHHHH--hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5666666666664 4443211101 347888888888864 444422 1357788888888888864
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.82 E-value=3e-08 Score=88.45 Aligned_cols=132 Identities=8% Similarity=0.063 Sum_probs=102.0
Q ss_pred CCCccEEeeecCCCCceec-cCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933 261 LPELQHLTIQNCPDMETFI-SNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN 339 (453)
Q Consensus 261 l~~L~~L~l~~c~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 339 (453)
.+.++.|+++++ .++.++ ... +..+++|+.|+++++..-.+. ...+..+++|++|+++++ .++.++...
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~--~~~l~~L~~L~L~~N~i~~i~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 100 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGI--FKKLPQLRKINFSNNKITDIE------EGAFEGASGVNEILLTSN-RLENVQHKM 100 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCC--GGGCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSS-CCCCCCGGG
T ss_pred CCCCCEEEcCCC-cCCccCchhh--hccCCCCCEEECCCCcCCEEC------HHHhCCCCCCCEEECCCC-ccCccCHhH
Confidence 346789999985 456553 333 678899999999987422211 123567899999999999 788888777
Q ss_pred CcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 340 DESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 340 ~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
| ..+++|++|++++ +.++.+ |..+..+++|++|++++ +.++.++.. .+..+++|++|++++.+
T Consensus 101 ~---~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 F---KGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp G---TTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred h---cCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHH-HhcCCCCCCEEEecCcC
Confidence 7 8999999999999 567777 45688899999999988 678887553 45678999999998655
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.80 E-value=1.7e-08 Score=90.66 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=80.4
Q ss_pred cceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccC-ccC
Q 012933 29 LVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHG-ILS 107 (453)
Q Consensus 29 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~ 107 (453)
-+.++.++. .++.+|..+ .++|++|++++ ..++.+... ....+++|++|+++++. ++.++.. +..
T Consensus 21 ~~~v~c~~~-~l~~ip~~~----------~~~L~~L~Ls~-n~i~~~~~~-~~~~l~~L~~L~L~~N~-l~~i~~~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGI----------PTNAQILYLHD-NQITKLEPG-VFDSLINLKELYLGSNQ-LGALPVGVFDS 86 (229)
T ss_dssp TTEEECTTS-CCSSCCSCC----------CTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCEeEccCC-CcCccCCCC----------CCCCCEEEcCC-CccCccCHH-HhhCccCCcEEECCCCC-CCCcChhhccc
Confidence 344555543 455555431 24566666665 334443222 13455666666666643 4544433 345
Q ss_pred CCCcceEEeccccccccccccCCccchhHHHHHH-hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933 108 TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYE-EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 108 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
+++|++|+++++. +..++. ....+++|++|+++++. +..++... ..+++|++|+++++
T Consensus 87 l~~L~~L~Ls~N~---------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L~~N- 145 (229)
T 3e6j_A 87 LTQLTVLDLGTNQ---------------LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGI----ERLTHLTHLALDQN- 145 (229)
T ss_dssp CTTCCEEECCSSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTG----GGCTTCSEEECCSS-
T ss_pred CCCcCEEECCCCc---------------CCccChhHhCcchhhCeEeccCCc-ccccCccc----ccCCCCCEEECCCC-
Confidence 6666666666431 111111 22345677777776665 44544433 45677888888775
Q ss_pred CccccCchhHHhhcCCCcEEEeccCc
Q 012933 187 NMSSAIPANLLRCLNNLQWLEVRNCD 212 (453)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~~ 212 (453)
.++.. +...+..+++|+.|++++++
T Consensus 146 ~l~~~-~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 146 QLKSI-PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred cCCcc-CHHHHhCCCCCCEEEeeCCC
Confidence 45544 33456777888888887753
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.79 E-value=7.8e-09 Score=88.77 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=65.8
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEecccCcccccccCC--
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSKCHGLINLLTF-- 390 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~-- 390 (453)
++.+++|++|++++| .++.++...+ ..+++|++|++++ +.++++|. .+..+++|++|++++ +.+..++..
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~ 133 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRL 133 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHH
T ss_pred cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHH
Confidence 346778888888887 6777776555 6788888888888 46777776 677888899999877 456665431
Q ss_pred CcccccCCcceEEEcccchh
Q 012933 391 STSESLVNLGRMMIADCKMI 410 (453)
Q Consensus 391 ~~~~~l~~L~~L~i~~C~~l 410 (453)
.....+++|++|+++++..-
T Consensus 134 ~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHHCTTCSEETTEECCHH
T ss_pred HHHHHCCccceeCCCcCCHH
Confidence 02567788999988888744
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=1.6e-08 Score=97.37 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=56.2
Q ss_pred ccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchhHHH
Q 012933 60 KLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQK 138 (453)
Q Consensus 60 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 138 (453)
.++.|++++ ++++.++.......+++|++|+++++ +++.++. .+..+++|++|+++++. +..
T Consensus 40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~---------------l~~ 102 (361)
T 2xot_A 40 YTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH---------------LHT 102 (361)
T ss_dssp TCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC---------------CCE
T ss_pred CCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc---------------CCc
Confidence 355555555 33444433321114555555555554 3443332 24445555555555321 111
Q ss_pred HH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHH---hhcCCCcEEEeccC
Q 012933 139 CY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLL---RCLNNLQWLEVRNC 211 (453)
Q Consensus 139 ~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l---~~l~~L~~L~l~~~ 211 (453)
++ .....+++|++|+++++. +..+.... + ..+++|++|+++++ .++.+ +...+ ..+++|+.|+++++
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~--~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNH-IVVVDRNA-F--EDMAQLQKLYLSQN-QISRF-PVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCSC-CGGGTC----CTTCCEEECCSS
T ss_pred CCHHHhCCCcCCCEEECCCCc-ccEECHHH-h--CCcccCCEEECCCC-cCCee-CHHHhcCcccCCcCCEEECCCC
Confidence 11 122334555555555554 33322211 1 23555666666554 23332 32323 34556666666553
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=3.5e-09 Score=88.17 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=38.4
Q ss_pred cCCCCccEEEEeeCCCCcccc--cCCCCCcCccCCCcEEEecCCCCccccCc--hhHHhhcCCCcEEEecc
Q 012933 144 IGFRDMEYLQLSYFPHLKEIW--HGQALPVSFFNNLARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVRN 210 (453)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~--~~~~l~~~~l~~L~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~~ 210 (453)
..+++|++|+++++. +..++ ... ..+++|++|+++++ .+++..+ ...+..+++|+.|++++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 335666666666665 44332 211 45788899999887 3555433 14688889999987753
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=3.8e-08 Score=93.51 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=54.2
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
..++..+.+.+.- .......+...+++|+.+++.++ .++.++... -..+ ++|+++.+.+. ++.+
T Consensus 201 ~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~a--------F~~~-~~L~~l~l~~n--i~~I-- 264 (329)
T 3sb4_A 201 PRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT-NATTIPDFT--------FAQK-KYLLKIKLPHN--LKTI-- 264 (329)
T ss_dssp GGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB-CCCEECTTT--------TTTC-TTCCEEECCTT--CCEE--
T ss_pred ccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC-CcceecHhh--------hhCC-CCCCEEECCcc--ccee--
Confidence 4455666665532 11111112233666777776653 244332200 0112 56666666552 5554
Q ss_pred CCCcccCCCCcc-EEeeecCCCCceeccCCcccccCCCccccccccc
Q 012933 254 FTGNIIELPELQ-HLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 254 ~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~ 299 (453)
....+.++++|+ .+.+.+ .++.++... +..+++|+.+++..+
T Consensus 265 ~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVLATGD 307 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEEECSS
T ss_pred hHHHhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEEeCCC
Confidence 234566677777 777765 555555544 666667777766543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.76 E-value=3.9e-09 Score=87.91 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=62.0
Q ss_pred CccceeeeccCCCcc--eeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLK--RFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLF 312 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~ 312 (453)
++|++|++.++. ++ .+ +..+..+++|+.|++++|. ++.+ .
T Consensus 17 ~~l~~L~l~~n~-l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~------------------------------- 58 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKL---EGLTDEFEELEFLSTINVG-LTSI--A------------------------------- 58 (149)
T ss_dssp GGCSEEECTTCB-CBTTBC---CSCCTTCTTCCEEECTTSC-CCCC--T-------------------------------
T ss_pred ccCeEEEccCCc-CChhHH---HHHHhhcCCCcEEECcCCC-CCCc--h-------------------------------
Confidence 667777777664 33 22 3445666677777766652 2222 1
Q ss_pred cccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccC--CCCCCCCCCCEEecccCcccccccCC
Q 012933 313 DEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLV--PPSWHLENLEALEVSKCHGLINLLTF 390 (453)
Q Consensus 313 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~ 390 (453)
.++.+++|++|++++| .++......+ ..+++|++|+++++ .++.++ ..+..+++|++|+++++ .++.++..
T Consensus 59 -~~~~l~~L~~L~Ls~n-~i~~~~~~~~---~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 131 (149)
T 2je0_A 59 -NLPKLNKLKKLELSDN-RVSGGLEVLA---EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY 131 (149)
T ss_dssp -TCCCCTTCCEEECCSS-CCCSCTHHHH---HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH
T ss_pred -hhhcCCCCCEEECCCC-cccchHHHHh---hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH
Confidence 1223455555555555 3333111111 34556666666653 344443 34555566666666553 44444320
Q ss_pred --CcccccCCcceEEEc
Q 012933 391 --STSESLVNLGRMMIA 405 (453)
Q Consensus 391 --~~~~~l~~L~~L~i~ 405 (453)
.....+++|++|+++
T Consensus 132 ~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 132 RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHHCTTCCEETTB
T ss_pred HHHHHHHCCCcccccCC
Confidence 123445555555543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=4.3e-09 Score=107.37 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=109.4
Q ss_pred CcccccceEEeccccchhhhhcccccccccccccccccceeeccccccc------------cccccccccccCCCcceEe
Q 012933 24 GIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTL------------TSFCLENYTLEFPSLERVS 91 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l~~L~~L~ 91 (453)
..+++|++|+|+++ .++.+|.+++. +++|+.|+++++..+ .+... .....+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHC
T ss_pred ccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCc
Confidence 56889999999996 78999998877 888888887653211 11100 1133455566655
Q ss_pred ecCCCCcccccc------Ccc--CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc
Q 012933 92 MTHCPNMKTFSH------GIL--STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI 163 (453)
Q Consensus 92 l~~c~~l~~~~~------~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 163 (453)
...+..+..++. .+. ....|+.|+++++ .+..++. +..+++|++|+++++. +..+
T Consensus 416 ~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---------------~l~~lp~-~~~l~~L~~L~Ls~N~-l~~l 478 (567)
T 1dce_A 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---------------DLTVLCH-LEQLLLVTHLDLSHNR-LRAL 478 (567)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS---------------CCSSCCC-GGGGTTCCEEECCSSC-CCCC
T ss_pred chhhcccchhhhhhhhcccccccCccCceEEEecCC---------------CCCCCcC-ccccccCcEeecCccc-cccc
Confidence 211111111110 000 0124666666643 1122332 4556777777777765 5455
Q ss_pred ccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhh-cccccccccCCCCCCCCccceeee
Q 012933 164 WHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVL-HLEEQNADKEHRGPLFPKLYGLRL 242 (453)
Q Consensus 164 ~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~L 242 (453)
|... ..+++|++|+++++ .++++ | .+..+++|+.|+++++ .+..+. +. ....+ ++|++|++
T Consensus 479 p~~~----~~l~~L~~L~Ls~N-~l~~l-p--~l~~l~~L~~L~Ls~N-~l~~~~~p~--------~l~~l-~~L~~L~L 540 (567)
T 1dce_A 479 PPAL----AALRCLEVLQASDN-ALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQ--------PLVSC-PRLVLLNL 540 (567)
T ss_dssp CGGG----GGCTTCCEEECCSS-CCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTG--------GGGGC-TTCCEEEC
T ss_pred chhh----hcCCCCCEEECCCC-CCCCC-c--ccCCCCCCcEEECCCC-CCCCCCCcH--------HHhcC-CCCCEEEe
Confidence 4433 45777778877775 35443 3 3677777788877775 344331 10 11112 77777777
Q ss_pred ccCCCcceeccC-CCcccCCCCccEEee
Q 012933 243 IDLPKLKRFCNF-TGNIIELPELQHLTI 269 (453)
Q Consensus 243 ~~~~~l~~~~~~-~~~~~~l~~L~~L~l 269 (453)
.+++ ++..+.. ...+..+|+|+.|++
T Consensus 541 ~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 7764 3332211 122344777877753
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=1.2e-08 Score=87.56 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred cccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKT 100 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 100 (453)
..+..+++|+.|++++| .++.++. +.. ..++|++|+++++ .++.+ .....+++|++|++++| .++.
T Consensus 13 ~~~~~~~~L~~L~l~~n-~l~~i~~-~~~-------~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~ 78 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-KIPVIEN-LGA-------TLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICR 78 (176)
T ss_dssp CEEECTTSCEEEECTTS-CCCSCCC-GGG-------GTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCE
T ss_pred HhcCCcCCceEEEeeCC-CCchhHH-hhh-------cCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccc
Confidence 44556778888888886 5666543 222 1347888888773 45554 22456777777777775 3555
Q ss_pred cccCc-cCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcE
Q 012933 101 FSHGI-LSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLAR 179 (453)
Q Consensus 101 ~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~ 179 (453)
+|..+ ..+++|++|+++ ++. +..++....+ ..+++|++
T Consensus 79 ~~~~~~~~l~~L~~L~L~--------------------------------------~N~-i~~~~~~~~l--~~l~~L~~ 117 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILT--------------------------------------NNS-LVELGDLDPL--ASLKSLTY 117 (176)
T ss_dssp ECSCHHHHCTTCCEEECC--------------------------------------SCC-CCCGGGGGGG--GGCTTCCE
T ss_pred cCcchhhcCCCCCEEECC--------------------------------------CCc-CCcchhhHhh--hcCCCCCE
Confidence 55433 344555555554 443 3332220001 34677888
Q ss_pred EEecCCCCccccCchh---HHhhcCCCcEEEeccCcc
Q 012933 180 LVVDDCTNMSSAIPAN---LLRCLNNLQWLEVRNCDS 213 (453)
Q Consensus 180 L~l~~c~~l~~~~~~~---~l~~l~~L~~L~l~~~~~ 213 (453)
|++++++ +... +.. .+..+++|+.|+++++..
T Consensus 118 L~l~~N~-i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 118 LCILRNP-VTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSSG-GGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEecCCC-CCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 8888764 3333 322 477888899998887643
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=2.7e-07 Score=80.32 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=49.6
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEecccCcccccccCCCccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
..+++|++|+++++ .++.++...| ..+++|++|++++ +.++.++. .+..+++|++|++++ +.++.++.. .+.
T Consensus 51 ~~l~~L~~L~Ls~N-~i~~i~~~~f---~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~-~~~ 123 (193)
T 2wfh_A 51 SNYKHLTLIDLSNN-RISTLSNQSF---SNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEG-AFN 123 (193)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTT-TTT
T ss_pred hcccCCCEEECCCC-cCCEeCHhHc---cCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChh-hhh
Confidence 34566666666665 4555555555 5666666666666 44555554 355666666666655 456655442 334
Q ss_pred ccCCcceEEEcc
Q 012933 395 SLVNLGRMMIAD 406 (453)
Q Consensus 395 ~l~~L~~L~i~~ 406 (453)
.+++|++|++.+
T Consensus 124 ~l~~L~~L~L~~ 135 (193)
T 2wfh_A 124 DLSALSHLAIGA 135 (193)
T ss_dssp TCTTCCEEECCS
T ss_pred cCccccEEEeCC
Confidence 556666666654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.59 E-value=2.8e-07 Score=80.16 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=46.1
Q ss_pred CccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcc
Q 012933 263 ELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDES 342 (453)
Q Consensus 263 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 342 (453)
+++.|+++++ .++.++.. ..+..+++|+.|+++++.--.+ ....+..+++|++|+++++ .++.++...|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-- 98 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSD-GLFGRLPHLVKLELKRNQLTGI------EPNAFEGASHIQELQLGEN-KIKEISNKMF-- 98 (192)
T ss_dssp TCSEEECCSC-CCCSBCCS-CSGGGCTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSC-CCCEECSSSS--
T ss_pred CCCEEECCCC-cCCccCCc-cccccCCCCCEEECCCCCCCCc------CHhHcCCcccCCEEECCCC-cCCccCHHHh--
Confidence 6677777664 33333321 0134444555555554421110 0012234445555555554 3444444433
Q ss_pred cccCCCccceeeccCCCcccc-CCCCCCCCCCCEEeccc
Q 012933 343 NKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSK 380 (453)
Q Consensus 343 ~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~ 380 (453)
..+++|++|++++ +.++.+ |..+..+++|++|++++
T Consensus 99 -~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 99 -LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred -cCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC
Confidence 4455555555555 233333 23344445555555544
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.58 E-value=3.6e-07 Score=78.22 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=53.9
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
..+++|++|+++++ .++.++...+ ..+++|+.|++++ +.++.++.. +..+++|++|++++ +.++.++.. ...
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~-~~~ 121 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDG-IFD 121 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT-TTT
T ss_pred cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHH-Hhc
Confidence 34566777777666 5666665555 5677777777777 456666554 45667777777766 456665542 334
Q ss_pred ccCCcceEEEcccc
Q 012933 395 SLVNLGRMMIADCK 408 (453)
Q Consensus 395 ~l~~L~~L~i~~C~ 408 (453)
.+++|++|++++++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56777777776554
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=7.5e-06 Score=79.61 Aligned_cols=145 Identities=11% Similarity=0.076 Sum_probs=90.9
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccc
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDE 314 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 314 (453)
.+|+.+.+.+ .++.+ ....+..+.+|+.+.+.. ....+.... +.....++.+...... +. -..
T Consensus 230 ~~l~~i~ip~--~~~~i--~~~~f~~~~~l~~~~~~~--~~~~i~~~~--F~~~~~l~~~~~~~~~-i~--------~~~ 292 (394)
T 4fs7_A 230 TGVKNIIIPD--SFTEL--GKSVFYGCTDLESISIQN--NKLRIGGSL--FYNCSGLKKVIYGSVI-VP--------EKT 292 (394)
T ss_dssp CCCCEEEECT--TCCEE--CSSTTTTCSSCCEEEECC--TTCEECSCT--TTTCTTCCEEEECSSE-EC--------TTT
T ss_pred CCCceEEECC--Cceec--ccccccccccceeEEcCC--Ccceeeccc--cccccccceeccCcee-ec--------ccc
Confidence 4556655532 23333 224556677777777754 223333332 4444455544433211 00 011
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTS 393 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~ 393 (453)
....++|+.+.+.+ .++.+....| .++.+|+.+.+.. .++.+... +.++++|+++.+.. +++.+... .+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~-aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGAN-AF 362 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-TB
T ss_pred cccccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHH-Hh
Confidence 23457899988865 4888888888 8999999999964 47778764 67789999999953 47777653 56
Q ss_pred cccCCcceEEEcc
Q 012933 394 ESLVNLGRMMIAD 406 (453)
Q Consensus 394 ~~l~~L~~L~i~~ 406 (453)
.+|++|+++++..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 6889999999864
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=9.6e-06 Score=78.93 Aligned_cols=219 Identities=8% Similarity=0.047 Sum_probs=125.0
Q ss_pred CccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccccc
Q 012933 148 DMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADK 227 (453)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 227 (453)
+|+++.+.+ .+..+.... + ..+++|+++++.+. +++.+ +...+. .++|+.+.+.+ .++.+... +
T Consensus 158 ~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n-~l~~I-~~~aF~-~~~L~~l~lp~--~l~~I~~~----a-- 221 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKT-KITKL-PASTFV-YAGIEEVLLPV--TLKEIGSQ----A-- 221 (401)
T ss_dssp CCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTS-CCSEE-CTTTTT-TCCCSEEECCT--TCCEECTT----T--
T ss_pred CceEEEeCC--CccEehHHH-h--hCcccCCeeecCCC-cceEe-chhhEe-ecccCEEEeCC--chheehhh----H--
Confidence 466666654 344444333 3 34667777777653 34433 333344 46677776653 23333210 0
Q ss_pred CCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccc
Q 012933 228 EHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQ 307 (453)
Q Consensus 228 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 307 (453)
-..+ ++|+.+.+.+ +++.+ ....+.+ .+|+.+.+. ..++.++... +..+++|+.+.+.++.... +.
T Consensus 222 --F~~~-~~L~~l~l~~--~l~~I--~~~aF~~-~~L~~i~lp--~~i~~I~~~a--F~~c~~L~~l~l~~~~~~~--~~ 287 (401)
T 4fdw_A 222 --FLKT-SQLKTIEIPE--NVSTI--GQEAFRE-SGITTVKLP--NGVTNIASRA--FYYCPELAEVTTYGSTFND--DP 287 (401)
T ss_dssp --TTTC-TTCCCEECCT--TCCEE--CTTTTTT-CCCSEEEEE--TTCCEECTTT--TTTCTTCCEEEEESSCCCC--CT
T ss_pred --hhCC-CCCCEEecCC--CccCc--ccccccc-CCccEEEeC--CCccEEChhH--hhCCCCCCEEEeCCccccC--Cc
Confidence 0012 5666666653 34444 2234444 567777773 3455555544 6667777777775532110 00
Q ss_pred cc-ccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccc
Q 012933 308 VQ-PLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLI 385 (453)
Q Consensus 308 l~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~ 385 (453)
.. ..-.....+++|+.+.+.+ .++.+....| .++++|+.+.+.. +++.+... +.++ +|+++.+.+ +.+.
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF---~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~ 358 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL---GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPP 358 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT--TCCEECTTTT---TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCC
T ss_pred ccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh---cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCc
Confidence 00 0001133567888888874 5888888888 8889999999965 47777664 5666 999999976 4566
Q ss_pred cccCCCccccc-CCcceEEEcc
Q 012933 386 NLLTFSTSESL-VNLGRMMIAD 406 (453)
Q Consensus 386 ~l~~~~~~~~l-~~L~~L~i~~ 406 (453)
.++.. .+..+ .++++|++..
T Consensus 359 ~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 359 QVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp BCCCS-SCCCSCTTCCEEEECG
T ss_pred ccccc-cccCCCCCccEEEeCH
Confidence 65543 33344 3678888865
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=9.2e-06 Score=79.05 Aligned_cols=262 Identities=8% Similarity=0.092 Sum_probs=162.9
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+..++.+.+-. .++.+....+. . .+|+.+.+... ++.++.....-.+|+.+.+.. ++..+.-
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~-~-~~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~---------- 173 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFR-N-SQIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKE---------- 173 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTT-T-CCCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECS----------
T ss_pred cCCccEEEECC--ccCEehHhhcc-c-CCccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehH----------
Confidence 45566666543 23444333222 2 36778777653 666655444435677777763 1111110
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhh
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEV 217 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 217 (453)
.+..++++|+.+.+.++. +..++... +. +.+|+++.+.. +++.+ +..++.++++|+.+++.+ .++.+
T Consensus 174 ---~aF~~c~~L~~l~l~~n~-l~~I~~~a-F~---~~~L~~l~lp~--~l~~I-~~~aF~~~~~L~~l~l~~--~l~~I 240 (401)
T 4fdw_A 174 ---DIFYYCYNLKKADLSKTK-ITKLPAST-FV---YAGIEEVLLPV--TLKEI-GSQAFLKTSQLKTIEIPE--NVSTI 240 (401)
T ss_dssp ---STTTTCTTCCEEECTTSC-CSEECTTT-TT---TCCCSEEECCT--TCCEE-CTTTTTTCTTCCCEECCT--TCCEE
T ss_pred ---HHhhCcccCCeeecCCCc-ceEechhh-Ee---ecccCEEEeCC--chhee-hhhHhhCCCCCCEEecCC--CccCc
Confidence 123456888888887654 66666555 43 57899998874 35544 556688899999999875 34433
Q ss_pred hcccccccccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCC----CceeccCCcccccCCCccc
Q 012933 218 LHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPD----METFISNSVVHVTTDNKEP 293 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~l~~L~~ 293 (453)
.. .+. . . .+|+.+.+. .+++.+ ....+.++++|+.+.+.+... ...++... +..+++|+.
T Consensus 241 ~~----~aF---~--~-~~L~~i~lp--~~i~~I--~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--F~~c~~L~~ 304 (401)
T 4fdw_A 241 GQ----EAF---R--E-SGITTVKLP--NGVTNI--ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--LEGCPKLAR 304 (401)
T ss_dssp CT----TTT---T--T-CCCSEEEEE--TTCCEE--CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--TTTCTTCCE
T ss_pred cc----ccc---c--c-CCccEEEeC--CCccEE--ChhHhhCCCCCCEEEeCCccccCCcccEECHHH--hhCCccCCe
Confidence 22 111 0 1 568888884 346665 346788899999999976432 22355444 778889999
Q ss_pred ccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCC-
Q 012933 294 QKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLE- 371 (453)
Q Consensus 294 L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~- 371 (453)
+.+.+. +... .-.....+++|+.+.+.+ +++.+....| .++ +|+.+.+.+ +....++.. +..++
T Consensus 305 l~l~~~--i~~I-----~~~aF~~c~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 305 FEIPES--IRIL-----GQGLLGGNRKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEG-TTPPQVFEKVWYGFPD 370 (401)
T ss_dssp ECCCTT--CCEE-----CTTTTTTCCSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECC-SSCCBCCCSSCCCSCT
T ss_pred EEeCCc--eEEE-----hhhhhcCCCCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcC-CCCcccccccccCCCC
Confidence 888742 2210 001233568999999965 4889999999 788 999999999 455666553 44553
Q ss_pred CCCEEeccc
Q 012933 372 NLEALEVSK 380 (453)
Q Consensus 372 ~L~~L~l~~ 380 (453)
+++.|.+-.
T Consensus 371 ~l~~l~vp~ 379 (401)
T 4fdw_A 371 DITVIRVPA 379 (401)
T ss_dssp TCCEEEECG
T ss_pred CccEEEeCH
Confidence 677887743
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.48 E-value=3.7e-07 Score=79.37 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=47.9
Q ss_pred ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc-ccCccCC
Q 012933 30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF-SHGILST 108 (453)
Q Consensus 30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~ 108 (453)
+.+++++. .++.+|..+ .+++++|++++ ..++.++.......+++|++|+++++. ++.+ |..+..+
T Consensus 11 ~~l~~s~~-~l~~ip~~~----------~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDI----------PLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTS-CCSSCCSCC----------CTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred CEEEcCCC-CcCcCccCC----------CCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCc
Confidence 67777775 677777642 23778888887 346555543334567788888887764 4443 4455556
Q ss_pred CCcceEEecc
Q 012933 109 PKLHKVQVTE 118 (453)
Q Consensus 109 ~~L~~L~l~~ 118 (453)
++|++|++++
T Consensus 78 ~~L~~L~Ls~ 87 (192)
T 1w8a_A 78 SHIQELQLGE 87 (192)
T ss_dssp TTCCEEECCS
T ss_pred ccCCEEECCC
Confidence 6666666664
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1.7e-07 Score=95.51 Aligned_cols=159 Identities=13% Similarity=0.181 Sum_probs=108.6
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
++.+++|+.|+...+..+..++................|+.|++++ ..++.++. ...+++|+.|++++| +++.+|
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~---~~~l~~L~~L~Ls~N-~l~~lp 479 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH---LEQLLLVTHLDLSHN-RLRALP 479 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC---GGGGTTCCEEECCSS-CCCCCC
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecC-CCCCCCcC---ccccccCcEeecCcc-cccccc
Confidence 4667888888833334555444311100000000123689999998 46777653 568999999999997 578999
Q ss_pred cCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCccc--ccCCCCCcCccCCCcEE
Q 012933 103 HGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEI--WHGQALPVSFFNNLARL 180 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~l~~~~l~~L~~L 180 (453)
..+..+++|+.|+++++ .+..++ .+..+++|++|+++++. +..+ +... ..+++|++|
T Consensus 480 ~~~~~l~~L~~L~Ls~N---------------~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l----~~l~~L~~L 538 (567)
T 1dce_A 480 PALAALRCLEVLQASDN---------------ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPL----VSCPRLVLL 538 (567)
T ss_dssp GGGGGCTTCCEEECCSS---------------CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGG----GGCTTCCEE
T ss_pred hhhhcCCCCCEEECCCC---------------CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHH----hcCCCCCEE
Confidence 99999999999999954 223345 67789999999999986 5554 3333 568999999
Q ss_pred EecCCCCccccCch--hHHhhcCCCcEEEe
Q 012933 181 VVDDCTNMSSAIPA--NLLRCLNNLQWLEV 208 (453)
Q Consensus 181 ~l~~c~~l~~~~~~--~~l~~l~~L~~L~l 208 (453)
++++++ +++.++. .....+++|+.|++
T Consensus 539 ~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999964 5554332 24566899998863
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.36 E-value=2e-06 Score=73.50 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=49.2
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccC
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKC 381 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 381 (453)
..+++|++|+++++ .++.++...+ ..+++|++|++++ +.++.+|.. +..+++|++|+++++
T Consensus 73 ~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 DKLTKLTILYLHEN-KLQSLPNGVF---DKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCC-CccccCHHHh---hCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 45788888888888 6777777666 7889999999998 478888875 467899999999874
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.33 E-value=9.4e-07 Score=76.88 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=79.3
Q ss_pred ceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccccc-CccCC
Q 012933 30 VNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSH-GILST 108 (453)
Q Consensus 30 ~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~ 108 (453)
+.+++++. .++.+|.++ .+++++|++++ ..++.++. ....+++|+.|+++++. ++.++. .+..+
T Consensus 13 ~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~-n~i~~ip~--~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI----------PRDVTELYLDG-NQFTLVPK--ELSNYKHLTLIDLSNNR-ISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTS-CCSSCCSCC----------CTTCCEEECCS-SCCCSCCG--GGGGCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CEEEcCCC-CCCcCCCCC----------CCCCCEEECCC-CcCchhHH--HhhcccCCCEEECCCCc-CCEeCHhHccCC
Confidence 45677764 577776532 34778888877 44665552 25677888888888764 555443 46667
Q ss_pred CCcceEEeccccccccccccCCccchhHHHH-HHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933 109 PKLHKVQVTEKEEGELHHWEGNKLNSTIQKC-YEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 109 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
++|++|+++++. +..+ +..+..+++|++|+++++. +..++... + ..+++|++|++++.+
T Consensus 78 ~~L~~L~Ls~N~---------------l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNR---------------LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGA-F--NDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSC---------------CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc---------------cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhh-h--hcCccccEEEeCCCC
Confidence 888888887542 1112 1234567888888888876 55555433 2 347899999999754
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.31 E-value=6.7e-07 Score=94.06 Aligned_cols=113 Identities=19% Similarity=0.075 Sum_probs=64.6
Q ss_pred CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 334 (453)
+..+..+++|+.|+++++. +..++.. +..+++|+.|+++++.--. ..+.++.+++|++|+|++| .++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~---~~~l~~L~~L~Ls~N~l~~-------lp~~~~~l~~L~~L~Ls~N-~l~~ 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISAN---IFKYDFLTRLYLNGNSLTE-------LPAEIKNLSNLRVLDLSHN-RLTS 284 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGG---GGGCCSCSCCBCTTSCCSC-------CCGGGGGGTTCCEEECTTS-CCSS
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChh---hcCCCCCCEEEeeCCcCcc-------cChhhhCCCCCCEEeCcCC-cCCc
Confidence 3456677778888887754 3344443 3356677777776652211 1123455667777777766 4555
Q ss_pred ecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccc
Q 012933 335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLI 385 (453)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 385 (453)
++... ..+++|++|++++ +.++.+|..+..+++|++|++++ +.++
T Consensus 285 lp~~~----~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~ 329 (727)
T 4b8c_D 285 LPAEL----GSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEG-NPLE 329 (727)
T ss_dssp CCSSG----GGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTT-SCCC
T ss_pred cChhh----cCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCC-CccC
Confidence 54432 5666777777776 35666666666677777777765 3344
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.31 E-value=1.1e-08 Score=89.64 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=33.5
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccc
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 119 (453)
+++|++|+++++ .++.++ ....+++|++|++++| .++.+|..+..+++|++|+++++
T Consensus 47 l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE
T ss_pred CCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC
Confidence 667777777663 455544 2455677777777665 35555544444556666666643
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=8e-08 Score=81.39 Aligned_cols=88 Identities=8% Similarity=0.214 Sum_probs=56.5
Q ss_pred CcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC-CCCC----CCCCCEEecccCcccccccCCCccc
Q 012933 320 RLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP-PSWH----LENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 320 ~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
+|+.|++++|. +++.....+ ..+++|++|++++|..+++-.- .+.. .++|++|++++|.++++-....+ .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-ccHHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 57777777774 555444433 6777788888888776664221 1122 24678888888887777544323 3
Q ss_pred ccCCcceEEEcccchhHH
Q 012933 395 SLVNLGRMMIADCKMIEQ 412 (453)
Q Consensus 395 ~l~~L~~L~i~~C~~l~~ 412 (453)
.+++|++|++++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 578888888888887754
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.28 E-value=3.5e-06 Score=71.56 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=36.2
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (453)
++|++|+++++ .++.++...| ..+++|++|++++ +.++.++.. +..+++|++|++++ ++++.++.. .+..++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG-AFDNLK 102 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCT
T ss_pred CCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCC-CccCEeCHH-HhcCCC
Confidence 34444444444 3444443333 4445555555554 344444443 24445555555544 344444331 233444
Q ss_pred CcceEEEc
Q 012933 398 NLGRMMIA 405 (453)
Q Consensus 398 ~L~~L~i~ 405 (453)
+|++|+++
T Consensus 103 ~L~~L~L~ 110 (170)
T 3g39_A 103 SLTHIWLL 110 (170)
T ss_dssp TCCEEECC
T ss_pred CCCEEEeC
Confidence 55555554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.25 E-value=5.3e-07 Score=94.80 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=39.8
Q ss_pred cCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccc
Q 012933 23 VGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFS 102 (453)
Q Consensus 23 ~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (453)
+..+++|+.|+|+++ .+..+|..++. +++|++|+|+++ .++.++.. ...+++|+.|++++|. ++.+|
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~--------l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFK--------YDFLTRLYLNGN-SLTELPAE--IKNLSNLRVLDLSHNR-LTSLP 286 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGG--------CCSCSCCBCTTS-CCSCCCGG--GGGGTTCCEEECTTSC-CSSCC
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcC--------CCCCCEEEeeCC-cCcccChh--hhCCCCCCEEeCcCCc-CCccC
Confidence 334455555555554 34455544333 555555555552 34433322 3445555555555542 44555
Q ss_pred cCccCCCCcceEEec
Q 012933 103 HGILSTPKLHKVQVT 117 (453)
Q Consensus 103 ~~~~~~~~L~~L~l~ 117 (453)
..+..+++|++|+++
T Consensus 287 ~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 287 AELGSCFQLKYFYFF 301 (727)
T ss_dssp SSGGGGTTCSEEECC
T ss_pred hhhcCCCCCCEEECC
Confidence 555555555555555
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=2.6e-08 Score=87.27 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=62.7
Q ss_pred ccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcccc
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTF 101 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 101 (453)
.++.+++|++|+++++ .++.+| .+.. +++|++|+++++ .++.++.. ...+++|++|++++| +++.+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~--------l~~L~~L~l~~n-~l~~l~~~--~~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSG--------MENLRILSLGRN-LIKKIENL--DAVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHH--------HTTCCEEEEEEE-EECSCSSH--HHHHHHCSEEEEEEE-ECCCH
T ss_pred HHhcCCCCCEEECCCC-CCcccc-cccc--------CCCCCEEECCCC-Ccccccch--hhcCCcCCEEECcCC-cCCcC
Confidence 4677899999999997 677777 5555 899999999984 56665543 456799999999997 56666
Q ss_pred ccCccCCCCcceEEeccc
Q 012933 102 SHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 102 ~~~~~~~~~L~~L~l~~~ 119 (453)
| .+..+++|++|+++++
T Consensus 109 ~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp H-HHHHHHHSSEEEESEE
T ss_pred C-ccccCCCCCEEECCCC
Confidence 5 4556677777777743
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=3.6e-07 Score=77.38 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (453)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 255 (453)
+|++|++++|. +++. ....+..+++|++|++++|..+++... ..+....... ++|++|++.+|+++++- +-
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~-~~L~~L~Ls~C~~ITD~--Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQ-KSMLEMEIISCGNVTDK--GI 132 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHH-HHCCEEEEESCTTCCHH--HH
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH----HHHHhccccc-CCCCEEEcCCCCcCCHH--HH
Confidence 46666666665 4332 222345666666666666666655321 1110000001 45777777777766653 11
Q ss_pred CcccCCCCccEEeeecCCCCcee
Q 012933 256 GNIIELPELQHLTIQNCPDMETF 278 (453)
Q Consensus 256 ~~~~~l~~L~~L~l~~c~~l~~~ 278 (453)
..+..+++|++|++++|+.+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 23456777777777777776653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.16 E-value=5e-06 Score=70.88 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
..+++|++|+++++ .++.++...| ..+++|+.|++++ +.++.+|.. +..+++|++|++++
T Consensus 54 ~~l~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN-KLTAIPTGVF---DKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred cCCcCCCEEECCCC-CCCccChhHh---CCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCC
Confidence 34455555555555 4455544444 4455555555555 344444443 44455555555544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.13 E-value=9.8e-06 Score=69.07 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=66.5
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (453)
++|++|+++++ .++.++...| ..+++|+.|++++ +.++.+|.. +..+++|++|++++ ++++.++.. .+..++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVF---DHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRG-AFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCT
T ss_pred CCCcEEEeCCC-CccccCHHHh---cCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHH-Hhcccc
Confidence 68888888888 6777776666 7889999999999 578888876 47889999999977 678887663 456788
Q ss_pred CcceEEEcccc
Q 012933 398 NLGRMMIADCK 408 (453)
Q Consensus 398 ~L~~L~i~~C~ 408 (453)
+|++|++.+.+
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999997654
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.00028 Score=68.35 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=56.8
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
..++|+.+.+.. .++.++...| .++.+|+.+.+.. +++.+... +..+.+|+++.+- .+++.+... .+.+
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~-aF~~ 355 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP--SSVTKIPES-AFSN 355 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC--TTCCBCCGG-GGTT
T ss_pred cccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC--cccCEEhHh-HhhC
Confidence 346777777753 5777887777 7888888888865 46677654 6677888888884 346666543 4567
Q ss_pred cCCcceEEEcccc
Q 012933 396 LVNLGRMMIADCK 408 (453)
Q Consensus 396 l~~L~~L~i~~C~ 408 (453)
|++|+.+++.+-.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 7888888887643
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=0.00036 Score=67.63 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=81.3
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
..+|+.+.+... .+.+ ....+..+.+++.+.+... +..+... .-..+ +.++.+..... .+
T Consensus 229 ~~~l~~i~ip~~--~~~i-~~~~f~~~~~l~~~~~~~~--~~~i~~~--------~F~~~-~~l~~~~~~~~----~i-- 288 (394)
T 4fs7_A 229 KTGVKNIIIPDS--FTEL-GKSVFYGCTDLESISIQNN--KLRIGGS--------LFYNC-SGLKKVIYGSV----IV-- 288 (394)
T ss_dssp TCCCCEEEECTT--CCEE-CSSTTTTCSSCCEEEECCT--TCEECSC--------TTTTC-TTCCEEEECSS----EE--
T ss_pred cCCCceEEECCC--ceec-ccccccccccceeEEcCCC--cceeecc--------ccccc-cccceeccCce----ee--
Confidence 568888888753 3332 3445777888888888652 2222110 00011 45555544321 12
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
....+..+.+|+.+.+.. .++.++... +..+ ++|+.+++.+ .++
T Consensus 289 ~~~~F~~~~~L~~i~l~~--~i~~I~~~a--F~~c------------------------------~~L~~i~lp~--~v~ 332 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLD--SVKFIGEEA--FESC------------------------------TSLVSIDLPY--LVE 332 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCEECTTT--TTTC------------------------------TTCCEECCCT--TCC
T ss_pred cccccccccccccccccc--ccceechhh--hcCC------------------------------CCCCEEEeCC--ccc
Confidence 234567788888888853 455554433 3333 3455555533 356
Q ss_pred eecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVS 379 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~ 379 (453)
.+....| .++.+|+.+.+.. .++.+... +.++++|+++.+.
T Consensus 333 ~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 333 EIGKRSF---RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECTTTT---TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred EEhHHhc---cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 6666666 6677777777654 25666553 5566777777774
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=6.9e-06 Score=78.64 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=36.9
Q ss_pred cCCCcCEEeecCCCCcce-ecccCCcccccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEecccCccccc
Q 012933 317 SFPRLRWLELSGLHKVQH-LWKENDESNKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
.+|+|++|.+++|. +.+ .....+. ...+++|++|+++. +.+++ ++..+.++++|+.|++++| .+.+
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 46788888887773 332 1111100 03567777777765 44543 3444456677777777654 3443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.81 E-value=4.7e-05 Score=64.47 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
+..+++|++|+++++ .++.++.+.| ..+++|+.|++++ +.++.++.. +..+++|++|++++
T Consensus 50 ~~~l~~L~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 50 FDRLTQLTRLDLDNN-QLTVLPAGVF---DKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hcCcccCCEEECCCC-CcCccChhhc---cCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCC
Confidence 346788999999888 6888888777 7899999999999 678888875 77889999999977
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.81 E-value=6.5e-05 Score=71.46 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=38.4
Q ss_pred ccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc-ccccCCCcCEEeecCCCCcceec
Q 012933 258 IIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD-EKVSFPRLRWLELSGLHKVQHLW 336 (453)
Q Consensus 258 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~ 336 (453)
+..+++|+.|+|++...++.++... +..+++|+.|+++++. +. ...+ .+..+++|++|+|+++ .++.++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~--~~~l~~L~~L~l~~N~-l~------~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRD--LRGLGELRNLTIVKSG-LR------FVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGG--SCSCCCCSEEECCSSC-CC------EECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhH--hccccCCCEEECCCCc-cc------eeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 5555566666666544555544332 3333344444443331 11 0001 1234455555555555 455555
Q ss_pred ccCCcccccCCCccceeecc
Q 012933 337 KENDESNKAFANLESLEISE 356 (453)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~ 356 (453)
...| ..++ |+.|++.+
T Consensus 97 ~~~~---~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 97 WKTV---QGLS-LQELVLSG 112 (347)
T ss_dssp STTT---CSCC-CCEEECCS
T ss_pred HHHc---ccCC-ceEEEeeC
Confidence 4443 2333 55555555
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.78 E-value=5.8e-05 Score=71.80 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=28.4
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
..+++|+.|+|+++ .++.++...| ..+++|++|++++ +.++.+|........|+.|++.+
T Consensus 53 ~~l~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 53 RGLGELRNLTIVKS-GLRFVAPDAF---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSCCCCSEEECCSS-CCCEECTTGG---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred ccccCCCEEECCCC-ccceeCHHHh---cCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeC
Confidence 34455555555555 4555544444 4555555555555 44445444322222255555543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=1.6e-05 Score=76.46 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=15.7
Q ss_pred cccceeeccccccccccccccccccCCCcceEeecCC
Q 012933 59 SKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHC 95 (453)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 95 (453)
++|++|+++++. ++..........+++|++|++++|
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC
Confidence 456666665532 222111111223445556666555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=9.7e-05 Score=70.61 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=47.4
Q ss_pred ccccceEEeccccchh--hhhcccccccccccccccccceeecccccccc----ccc----cccccccCCCcceEeecCC
Q 012933 26 PSSLVNLNVSRCDKIE--EIIRHVGEEAKENRIAFSKLKVLILDYLPTLT----SFC----LENYTLEFPSLERVSMTHC 95 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~----~~~~~~~l~~L~~L~l~~c 95 (453)
...++.|.+..+. .. .... ...........|++|+.|.+.+.. .+ .|. .......+|+|+.|+++++
T Consensus 106 ~~~v~~L~lg~~~-~~~~~~~~-~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 106 LPSLKQITIGXWG-YEGEDCSD-IADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGGCSEEEECCCC-SSSCCSHH-HHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred chhcceEEEcccc-cCCCcHHH-HHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 5567788777653 22 1000 000001123348899999886531 11 111 1122346799999999887
Q ss_pred CCccccccCccCCCCcceEEeccc
Q 012933 96 PNMKTFSHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 96 ~~l~~~~~~~~~~~~L~~L~l~~~ 119 (453)
..+. ++. ...++|++|++..|
T Consensus 183 ~~l~-l~~--~~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 183 NNLS-IGK--KPRPNLKSLEIISG 203 (362)
T ss_dssp BTCB-CCS--CBCTTCSEEEEECS
T ss_pred CCce-ecc--ccCCCCcEEEEecC
Confidence 4443 222 23788999988754
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.0063 Score=58.31 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccC
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (453)
.+|+.+.+.. .++.+....| ..+++|+.+.+.+ ..++.++.. +.++.+|+++.+. ++++.+... .+.+|.
T Consensus 263 ~~l~~i~l~~--~i~~i~~~aF---~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~-aF~~C~ 333 (379)
T 4h09_A 263 TALKTLNFYA--KVKTVPYLLC---SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP--TALKTIQVY-AFKNCK 333 (379)
T ss_dssp TTCCEEEECC--CCSEECTTTT---TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCT
T ss_pred ehhccccccc--cceecccccc---ccccccccccccc-cccceehhhhhcCCCCCCEEEcC--ccccEEHHH-HhhCCC
Confidence 3444444432 2444444444 4555555555544 234444432 3444555555542 124443332 233444
Q ss_pred CcceEEE
Q 012933 398 NLGRMMI 404 (453)
Q Consensus 398 ~L~~L~i 404 (453)
+|+++.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 4444444
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0056 Score=59.07 Aligned_cols=318 Identities=10% Similarity=0.085 Sum_probs=166.4
Q ss_pred ccCccc-ccceEEeccccchhhhhcccccccccccccccccceeecccc--ccccccccccccccCCCcceEeecCCCCc
Q 012933 22 QVGIPS-SLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYL--PTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (453)
Q Consensus 22 ~~~~~~-~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 98 (453)
+|..+. .|+.+.+-. .++.|... +...+.+|+.+.+.+. ..++.+.... ...+.+|+.+.+.. .+
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~-------AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~~L~~i~~~~--~~ 125 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSN-------AFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCSELTDIPILD--SV 125 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTT-------TTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCTTCCBCGGGT--TC
T ss_pred hccCCCCcCEEEEECC--CeeEEhHH-------HhhCCccCceEeecCCCCCeeeEechhh-chhcccceeeccCC--cc
Confidence 344453 588888864 46666543 2234788888888652 2344443332 23456777666543 34
Q ss_pred cccccC-ccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933 99 KTFSHG-ILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL 177 (453)
Q Consensus 99 ~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L 177 (453)
+.++.. +..+.+|+.+.+..... . +. ......+.+|+.+.+.+ .+..+.... +. ..+|
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~~~--~-----------I~--~~~F~~c~~L~~i~~~~--~~~~I~~~a-F~---~~~l 184 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEGVT--S-----------VA--DGMFSYCYSLHTVTLPD--SVTAIEERA-FT---GTAL 184 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTTCC--E-----------EC--TTTTTTCTTCCEEECCT--TCCEECTTT-TT---TCCC
T ss_pred ceehhhhhhhhcccccccccceee--e-----------ec--ccceecccccccccccc--eeeEecccc-cc---ccce
Confidence 444433 34577788888763210 0 00 01223456777777654 234433333 32 3568
Q ss_pred cEEEecCCCCccccCchhHHhhcCCCcEEEeccCcc--chhhhcccccccccCCCCCCC---CccceeeeccCCCcceec
Q 012933 178 ARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDS--IEEVLHLEEQNADKEHRGPLF---PKLYGLRLIDLPKLKRFC 252 (453)
Q Consensus 178 ~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~l~~~~ 252 (453)
+++.+... .+.. ....+..+.+++......... +..... .. ..........+ ..+..+.+ ...++.+
T Consensus 185 ~~i~ip~~--~~~i-~~~af~~c~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i--p~~v~~i- 256 (394)
T 4gt6_A 185 TQIHIPAK--VTRI-GTNAFSECFALSTITSDSESYPAIDNVLY-EK-SANGDYALIRYPSQREDPAFKI--PNGVARI- 256 (394)
T ss_dssp SEEEECTT--CCEE-CTTTTTTCTTCCEEEECCSSSCBSSSCEE-EE-CTTSCEEEEECCTTCCCSEEEC--CTTEEEE-
T ss_pred eEEEECCc--cccc-ccchhhhccccceecccccccccccceee-cc-cccccccccccccccccceEEc--CCcceEc-
Confidence 88887652 2222 334466677777766543211 111000 00 00000000000 12222222 1223333
Q ss_pred cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (453)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 332 (453)
....+..+.+|+.+.+.. .+..++... +..+.+|+.+.+.+. +. .+. -......++|+.+.|.+ .+
T Consensus 257 -~~~aF~~c~~L~~i~lp~--~~~~I~~~a--F~~c~~L~~i~l~~~--i~---~I~--~~aF~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 257 -ETHAFDSCAYLASVKMPD--SVVSIGTGA--FMNCPALQDIEFSSR--IT---ELP--ESVFAGCISLKSIDIPE--GI 322 (394)
T ss_dssp -CTTTTTTCSSCCEEECCT--TCCEECTTT--TTTCTTCCEEECCTT--CC---EEC--TTTTTTCTTCCEEECCT--TC
T ss_pred -ccceeeecccccEEeccc--ccceecCcc--cccccccccccCCCc--cc---ccC--ceeecCCCCcCEEEeCC--cc
Confidence 234677788888888753 334444443 566667777776532 11 000 01123457899999975 48
Q ss_pred ceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEE
Q 012933 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMI 404 (453)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 404 (453)
+.+....| .++.+|+++.+.. .++.+... +.++++|+.+.+.+.. .... .+..+.+|+.+.+
T Consensus 323 ~~I~~~aF---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~~~---~~~~~~~L~~i~i 385 (394)
T 4gt6_A 323 TQILDDAF---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQWN---AISTDSGLQNLPV 385 (394)
T ss_dssp CEECTTTT---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HHHH---TCBCCCCC-----
T ss_pred cEehHhHh---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--eehh---hhhccCCCCEEEe
Confidence 88998888 8999999999965 47777764 6788999999986532 1111 1234466666655
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.86 E-value=0.00031 Score=67.49 Aligned_cols=84 Identities=12% Similarity=0.267 Sum_probs=49.2
Q ss_pred ccccceEEeccccchhhh-hcccccccccccccccccceeeccccccccccccccc---c-ccCCCcceEeecCCCCccc
Q 012933 26 PSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENY---T-LEFPSLERVSMTHCPNMKT 100 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~-~~l~~L~~L~l~~c~~l~~ 100 (453)
.++|+.|+|++|. ++.. ... ....+++|++|+++++ .++....... . ...++|++|++++|. ++.
T Consensus 100 ~~~L~~L~Ls~n~-l~~~~~~~-------l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~ 169 (372)
T 3un9_A 100 RHALDEVNLASCQ-LDPAGLRT-------LLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTA 169 (372)
T ss_dssp SSCEEEEECTTCC-CCHHHHHH-------THHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHH
T ss_pred CCCceEEEecCCC-CCHHHHHH-------HHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CCh
Confidence 3688899998873 4322 111 2223678999999985 3443322211 1 235788999998874 442
Q ss_pred -----cccCccCCCCcceEEeccc
Q 012933 101 -----FSHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 101 -----~~~~~~~~~~L~~L~l~~~ 119 (453)
++..+...++|++|++++|
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCC
Confidence 3333345566666666643
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.79 E-value=0.12 Score=49.28 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=61.2
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
...+|+.+.+.+ .++.+....| ..+.+|+.+.+.. .++.++.. +..+++|+++.+.+ ..++.+... .+.+
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~-aF~~ 308 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR-VFMD 308 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTT-TTTT
T ss_pred CCccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhh-hhcC
Confidence 346788888865 4788888888 7899999999865 57777764 67889999999965 457777654 5567
Q ss_pred cCCcceEEEc
Q 012933 396 LVNLGRMMIA 405 (453)
Q Consensus 396 l~~L~~L~i~ 405 (453)
|.+|+.+++.
T Consensus 309 c~~L~~i~lp 318 (379)
T 4h09_A 309 CVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEEcC
Confidence 8899998884
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.83 E-value=0.0089 Score=50.99 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=23.8
Q ss_pred HHHHhhcCCCCccEEEE--eeCCCCcccccCCCC--CcCccCCCcEEEecCCC
Q 012933 138 KCYEEMIGFRDMEYLQL--SYFPHLKEIWHGQAL--PVSFFNNLARLVVDDCT 186 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~l--~~~~l~~L~~L~l~~c~ 186 (453)
.+...+...+.|++|++ +++. +.+..... + .....++|++|+++++.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~-l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEME-IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHH-HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHH-HHHHHHhCCCcCEEeccCCC
Confidence 34455555666777777 4444 43211000 0 00224678888887754
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.55 E-value=0.025 Score=48.12 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=60.2
Q ss_pred cCCCcceEeecCCCCcc-----ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeC
Q 012933 83 EFPSLERVSMTHCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYF 157 (453)
Q Consensus 83 ~l~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (453)
..+.|++|++++|..+. .+...+...++|++|++++|.- . ......+...+...++|++|+++++
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i------~----~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS------N----DPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC------C----HHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC------C----hHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45666666666653343 1333334456666666665421 0 1112234445555677888888887
Q ss_pred CCCcccccCC-CCCcCccCCCcEEEe--cCCCCccccC---chhHHhhcCCCcEEEeccC
Q 012933 158 PHLKEIWHGQ-ALPVSFFNNLARLVV--DDCTNMSSAI---PANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 158 ~~l~~~~~~~-~l~~~~l~~L~~L~l--~~c~~l~~~~---~~~~l~~l~~L~~L~l~~~ 211 (453)
. +.+..... .-.....++|++|++ +++ .+.... -...+...++|++|+++++
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 6 33211000 000133567888888 544 333211 1123455678888888775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.46 E-value=0.01 Score=53.78 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=47.9
Q ss_pred ccccceeeccccccccccccc-cccccCCCcceEeecCCCCccccccCccCCC--CcceEEeccccccccccccCCccch
Q 012933 58 FSKLKVLILDYLPTLTSFCLE-NYTLEFPSLERVSMTHCPNMKTFSHGILSTP--KLHKVQVTEKEEGELHHWEGNKLNS 134 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~ 134 (453)
+++|+.|++++ ++++.+... .....+++|+.|+++++ +++.+ ..+..+. +|+.|++.+++-- +. +..
T Consensus 169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~------~~-~~~ 238 (267)
T 3rw6_A 169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLC------DT-FRD 238 (267)
T ss_dssp CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTG------GG-CSS
T ss_pred CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCc------cc-cCc
Confidence 77888888887 445554321 22346788888888775 35543 1223333 7777777764311 00 000
Q ss_pred hHHHHHHhhcCCCCccEEEEee
Q 012933 135 TIQKCYEEMIGFRDMEYLQLSY 156 (453)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~ 156 (453)
...-....+..+++|+.|+-..
T Consensus 239 ~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESSCB
T ss_pred chhHHHHHHHHCcccCeECCcC
Confidence 0111123455578888876443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.25 E-value=0.0081 Score=54.39 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=37.2
Q ss_pred cCCCcCEEeecCCCCcceecc--cCCcccccCCCccceeeccCCCccccCCCCCCCC--CCCEEecccCc
Q 012933 317 SFPRLRWLELSGLHKVQHLWK--ENDESNKAFANLESLEISECSKLQKLVPPSWHLE--NLEALEVSKCH 382 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~ 382 (453)
.+|+|++|+++++ .++.+.. ..+ ..+++|+.|++++ +.++.+.. +..+. +|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~---~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIV---QKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHH---HHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHH---hhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCc
Confidence 5778888888887 5665542 111 4677888888877 55655522 22222 77777777643
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.47 E-value=1.8 Score=34.04 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=14.9
Q ss_pred CCCEEecccCcccccccCCCcccccCCcceEEEc
Q 012933 372 NLEALEVSKCHGLINLLTFSTSESLVNLGRMMIA 405 (453)
Q Consensus 372 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 405 (453)
+|++|++++ ++++.++.. .+..+++|++|++.
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~-~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPG-LLDALPALRTAHLG 63 (130)
T ss_dssp TCSEEECTT-SCCSSCCTT-TGGGCTTCCEEECC
T ss_pred CCCEEECCC-CcCCccChh-hhhhccccCEEEec
Confidence 445555544 445544432 33344555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.93 E-value=1.4 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=23.9
Q ss_pred CCcCEEeecCCCCcceecccCCcccccCCCccceeecc
Q 012933 319 PRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISE 356 (453)
Q Consensus 319 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~ 356 (453)
++|+.|+|+++ .++.++.+.| ..+++|+.|++.+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLL---DALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTG---GGCTTCCEEECCS
T ss_pred cCCCEEECCCC-cCCccChhhh---hhccccCEEEecC
Confidence 46777777776 6777777666 6677777777776
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=41.63 E-value=28 Score=29.38 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=8.6
Q ss_pred hcCCCCccEEEEeeCC
Q 012933 143 MIGFRDMEYLQLSYFP 158 (453)
Q Consensus 143 ~~~~~~L~~L~l~~~~ 158 (453)
+..-+.|++|+|+++.
T Consensus 94 L~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 94 IETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHCSSCCEEECCSSB
T ss_pred HhcCCccCeEecCCCc
Confidence 3334556666666554
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.03 E-value=34 Score=25.14 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=32.0
Q ss_pred CcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
.++.+....| .++.+|+++.|-. .++.+... +.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF---~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLF---AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTT---TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHh---cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 4566666677 7788888888876 46666553 66788888888855
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=29.32 E-value=42 Score=28.27 Aligned_cols=89 Identities=9% Similarity=0.100 Sum_probs=43.6
Q ss_pred ccccceeecccccccccccc---ccccccCCCcceEeecCCCCcc-----ccccCccCCCCcceEEeccccccccccccC
Q 012933 58 FSKLKVLILDYLPTLTSFCL---ENYTLEFPSLERVSMTHCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEG 129 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 129 (453)
-+.|++|+++++..+..-.. ......-+.|+.|++++|. +. .+......-..|+.|+++.+.- .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~I------g- 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFL------T- 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBC------C-
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcC------C-
Confidence 34667777765322221100 1112334667777777764 43 2223333456677887775321 0
Q ss_pred CccchhHHHHHHhhcCCCCccEEEEeeC
Q 012933 130 NKLNSTIQKCYEEMIGFRDMEYLQLSYF 157 (453)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (453)
......+.+++..-+.|++|+++++
T Consensus 112 ---~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 ---PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ---HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ---HHHHHHHHHHHhhCCceeEEECCCC
Confidence 1122344445544455666666543
Done!