Query 012933
Match_columns 453
No_of_seqs 157 out of 2067
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 19:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012933.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012933hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2omza2 c.10.2.1 (A:33-416) In 99.7 1.7E-16 1.2E-20 152.4 23.2 84 20-119 37-120 (384)
2 d2omza2 c.10.2.1 (A:33-416) In 99.7 1.3E-15 9.3E-20 146.1 20.0 298 58-439 43-383 (384)
3 d1xkua_ c.10.2.7 (A:) Decorin 99.6 1E-13 7.5E-18 128.5 19.5 63 317-386 217-286 (305)
4 d1xkua_ c.10.2.7 (A:) Decorin 99.5 1.1E-12 7.9E-17 121.4 23.9 87 316-408 192-283 (305)
5 d2astb2 c.10.1.3 (B:2136-2419) 99.5 6.4E-15 4.7E-19 135.3 7.4 124 142-277 66-190 (284)
6 d1ogqa_ c.10.2.8 (A:) Polygala 99.5 1.5E-14 1.1E-18 134.7 9.8 93 256-364 215-308 (313)
7 d1ogqa_ c.10.2.8 (A:) Polygala 99.5 1.7E-13 1.3E-17 127.4 13.9 252 85-386 50-306 (313)
8 d1jl5a_ c.10.2.6 (A:) Leucine 99.4 5.3E-12 3.8E-16 118.7 22.4 135 27-211 38-172 (353)
9 d1p9ag_ c.10.2.7 (G:) von Will 99.4 3.5E-12 2.6E-16 115.5 17.2 175 174-380 30-204 (266)
10 d1ozna_ c.10.2.7 (A:) Reticulo 99.4 5.2E-12 3.8E-16 115.5 16.9 203 174-406 31-234 (284)
11 d2astb2 c.10.1.3 (B:2136-2419) 99.4 3.2E-13 2.4E-17 123.7 7.3 217 21-278 40-261 (284)
12 d1h6ua2 c.10.2.1 (A:36-262) In 99.3 1.3E-11 9.4E-16 108.9 15.3 98 174-297 128-225 (227)
13 d1h6ua2 c.10.2.1 (A:36-262) In 99.3 1.4E-11 1E-15 108.6 15.1 187 174-406 40-226 (227)
14 d1p9ag_ c.10.2.7 (G:) von Will 99.3 6.6E-12 4.8E-16 113.7 12.8 196 175-408 10-206 (266)
15 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.3 8.2E-11 6E-15 104.6 17.5 205 174-408 28-236 (242)
16 d1h6ta2 c.10.2.1 (A:31-240) In 99.2 4.9E-11 3.6E-15 103.7 13.2 166 173-406 44-209 (210)
17 d1jl5a_ c.10.2.6 (A:) Leucine 99.2 4.7E-10 3.4E-14 105.0 19.5 300 8-404 42-351 (353)
18 d2omxa2 c.10.2.1 (A:37-235) In 99.2 1.2E-10 8.8E-15 100.3 13.8 75 316-402 125-199 (199)
19 d1ozna_ c.10.2.7 (A:) Reticulo 99.2 2.6E-10 1.9E-14 103.9 15.8 211 97-380 22-234 (284)
20 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.1 8.7E-10 6.4E-14 97.7 16.8 66 317-389 174-240 (242)
21 d1h6ta2 c.10.2.1 (A:31-240) In 99.1 2.9E-10 2.1E-14 98.7 12.7 165 146-380 45-209 (210)
22 d2omxa2 c.10.2.1 (A:37-235) In 99.1 9.9E-11 7.2E-15 100.8 9.1 33 235-272 150-182 (199)
23 d1a9na_ c.10.2.4 (A:) Spliceso 98.8 2.8E-09 2E-13 88.1 6.2 59 317-380 61-121 (162)
24 d1w8aa_ c.10.2.7 (A:) Slit {Fr 98.6 1.1E-07 7.8E-12 80.8 10.9 106 262-380 29-135 (192)
25 d1a9na_ c.10.2.4 (A:) Spliceso 98.6 7.8E-09 5.7E-13 85.4 2.9 135 19-209 10-147 (162)
26 d1dcea3 c.10.2.2 (A:444-567) R 98.6 8.7E-08 6.4E-12 75.0 8.1 86 315-408 16-101 (124)
27 d1w8aa_ c.10.2.7 (A:) Slit {Fr 98.5 2.4E-07 1.7E-11 78.5 10.8 82 317-405 52-134 (192)
28 d1dcea3 c.10.2.2 (A:444-567) R 98.5 8.1E-08 5.9E-12 75.2 6.0 101 322-440 1-101 (124)
29 d1z7xw1 c.10.1.1 (W:1-460) Rib 98.4 2.4E-08 1.8E-12 96.3 0.6 365 24-408 24-437 (460)
30 d2ifga3 c.10.2.7 (A:36-191) Hi 98.2 2.5E-06 1.8E-10 69.3 9.9 82 317-405 29-111 (156)
31 d1m9la_ c.10.3.1 (A:) Outer ar 98.2 3.2E-09 2.4E-13 90.9 -8.3 123 235-380 23-149 (198)
32 d2ifga3 c.10.2.7 (A:36-191) Hi 98.2 3.8E-06 2.8E-10 68.2 10.0 108 260-381 6-113 (156)
33 d1z7xw1 c.10.1.1 (W:1-460) Rib 98.1 1.3E-08 9.4E-13 98.3 -7.9 112 27-158 2-123 (460)
34 d1m9la_ c.10.3.1 (A:) Outer ar 98.1 6.7E-08 4.9E-12 82.4 -2.9 56 58-118 47-102 (198)
35 d2ca6a1 c.10.1.2 (A:2-345) Rna 97.8 8E-06 5.8E-10 75.5 5.1 257 22-299 26-312 (344)
36 d2ca6a1 c.10.1.2 (A:2-345) Rna 97.7 1.8E-06 1.3E-10 80.1 -0.8 62 317-380 241-311 (344)
37 d1koha1 c.10.2.3 (A:201-362) m 95.5 0.0011 8E-08 53.4 0.0 59 317-380 63-124 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 94.9 0.0034 2.5E-07 50.4 1.2 90 58-156 64-155 (162)
39 d1io0a_ c.10.1.1 (A:) Tropomod 91.8 0.097 7.1E-06 41.4 5.2 19 138-156 93-111 (166)
40 d1io0a_ c.10.1.1 (A:) Tropomod 91.7 0.11 7.9E-06 41.1 5.3 73 138-210 65-141 (166)
41 d1pgva_ c.10.1.1 (A:) Tropomod 90.9 0.077 5.6E-06 42.2 3.6 12 58-69 14-25 (167)
42 d1pgva_ c.10.1.1 (A:) Tropomod 88.7 0.15 1.1E-05 40.4 3.6 15 26-40 14-28 (167)
No 1
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.73 E-value=1.7e-16 Score=152.36 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=64.2
Q ss_pred ccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 20 YFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 20 ~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
..+...+.+|++|+++++ .++.+. ++.. +++|++|+++++ ++++++. ...+++|++|++++|. +.
T Consensus 37 ~~~~~~l~~l~~L~l~~~-~I~~l~-gl~~--------L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n~-i~ 101 (384)
T d2omza2 37 TVSQTDLDQVTTLQADRL-GIKSID-GVEY--------LNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IA 101 (384)
T ss_dssp EECHHHHTTCCEEECCSS-CCCCCT-TGGG--------CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred ccCHHHhCCCCEEECCCC-CCCCcc-cccc--------CCCCCEEeCcCC-cCCCCcc---ccCCcccccccccccc-cc
Confidence 334456789999999997 677663 3444 899999999994 5777653 5679999999999985 55
Q ss_pred ccccCccCCCCcceEEeccc
Q 012933 100 TFSHGILSTPKLHKVQVTEK 119 (453)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~~ 119 (453)
.++ .+..+++|+.+++.++
T Consensus 102 ~i~-~l~~l~~L~~L~~~~~ 120 (384)
T d2omza2 102 DIT-PLANLTNLTGLTLFNN 120 (384)
T ss_dssp CCG-GGTTCTTCCEEECCSS
T ss_pred ccc-cccccccccccccccc
Confidence 554 3678999999999864
No 2
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.67 E-value=1.3e-15 Score=146.06 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=178.0
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHH
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQ 137 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 137 (453)
+.+|++|+++++ +++.+ +....+++|++|+++++ +++.++. +..+++|++|+++++.- .
T Consensus 43 l~~l~~L~l~~~-~I~~l---~gl~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n~i---------------~ 101 (384)
T d2omza2 43 LDQVTTLQADRL-GIKSI---DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQI---------------A 101 (384)
T ss_dssp HTTCCEEECCSS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---------------C
T ss_pred hCCCCEEECCCC-CCCCc---cccccCCCCCEEeCcCC-cCCCCcc-ccCCccccccccccccc---------------c
Confidence 678999999984 35544 22568999999999997 5888764 78899999999997632 1
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEE------------------------------------
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLV------------------------------------ 181 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~------------------------------------ 181 (453)
.++ .+..+++|+.|+++++.. ..++... ....+....
T Consensus 102 ~i~-~l~~l~~L~~L~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (384)
T d2omza2 102 DIT-PLANLTNLTGLTLFNNQI-TDIDPLK-----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174 (384)
T ss_dssp CCG-GGTTCTTCCEEECCSSCC-CCCGGGT-----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred ccc-cccccccccccccccccc-ccccccc-----ccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence 111 245678888888876652 2111111 001111111
Q ss_pred -------ecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 182 -------VDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 182 -------l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
...+. . ........+++++.+.++++ .+..++... ..++|++|.+.++. ++++
T Consensus 175 ~~~~~~~~~~~~---~-~~~~~~~~l~~~~~l~l~~n-~i~~~~~~~-----------~~~~L~~L~l~~n~-l~~~--- 234 (384)
T d2omza2 175 TTLERLDISSNK---V-SDISVLAKLTNLESLIATNN-QISDITPLG-----------ILTNLDELSLNGNQ-LKDI--- 234 (384)
T ss_dssp TTCCEEECCSSC---C-CCCGGGGGCTTCSEEECCSS-CCCCCGGGG-----------GCTTCCEEECCSSC-CCCC---
T ss_pred cccccccccccc---c-ccccccccccccceeeccCC-ccCCCCccc-----------ccCCCCEEECCCCC-CCCc---
Confidence 11100 0 01123456667777777664 233322211 22677888877663 4443
Q ss_pred CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 334 (453)
..+..+++|+.|++.++. +..++. +..+++|+.|+++++.-.. ++....++.++.+.+.++ .++.
T Consensus 235 -~~l~~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~~~l~~--------~~~~~~~~~l~~l~~~~n-~l~~ 299 (384)
T d2omza2 235 -GTLASLTNLTDLDLANNQ-ISNLAP----LSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNEN-QLED 299 (384)
T ss_dssp -GGGGGCTTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSSCCCC--------CGGGTTCTTCSEEECCSS-CCSC
T ss_pred -chhhcccccchhccccCc-cCCCCc----ccccccCCEeeccCcccCC--------CCcccccccccccccccc-cccc
Confidence 356677888888887764 333322 4456678888777653211 122345667777777666 4444
Q ss_pred ecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccchhHHHH
Q 012933 335 LWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCKMIEQII 414 (453)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~ 414 (453)
+.. + ..+++++.|+++++ ++++++. +..+++|++|++++| ++++++. ...+++|++|+++++. ++++
T Consensus 300 ~~~--~---~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N~-l~~l- 366 (384)
T d2omza2 300 ISP--I---SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHNQ-ISDL- 366 (384)
T ss_dssp CGG--G---GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCBC-
T ss_pred ccc--c---chhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCCc-CCCC-
Confidence 332 2 57777888888774 5666643 566788888888775 6776642 4567888888887764 3221
Q ss_pred hhccCCccCCCceeccccchhhhhh
Q 012933 415 QLQVGEEAKDCNVFKELSCETMSKN 439 (453)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~l~l~~~ 439 (453)
..+..+++|+.|+++++
T Consensus 367 --------~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 367 --------TPLANLTRITQLGLNDQ 383 (384)
T ss_dssp --------GGGTTCTTCSEEECCCE
T ss_pred --------hhhccCCCCCEeeCCCC
Confidence 12456777787777764
No 3
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.55 E-value=1e-13 Score=128.51 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=39.5
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-------CCCCCCCCEEecccCccccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-------SWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~l~~L~~L~l~~c~~l~~ 386 (453)
.+++|++|++++| .++.++.. + ..+++|++|++++ +++++++.. ....++|+.|.+++. .++.
T Consensus 217 ~l~~L~~L~L~~N-~L~~lp~~-l---~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N-~~~~ 286 (305)
T d1xkua_ 217 NTPHLRELHLNNN-KLVKVPGG-L---ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQY 286 (305)
T ss_dssp GSTTCCEEECCSS-CCSSCCTT-T---TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCG
T ss_pred ccccceeeecccc-cccccccc-c---ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCC-cCcc
Confidence 4567777777776 56666542 3 5677777777777 456666542 234577888888773 3443
No 4
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.52 E-value=1.1e-12 Score=121.44 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=72.8
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCC----
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFS---- 391 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~---- 391 (453)
..++.+++|+++++ .+++++...+ ..+++|++|++++| +++.+|.++.++++|++|++++ +++++++...
T Consensus 192 ~~~~~l~~L~~s~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~~~f~~~ 265 (305)
T d1xkua_ 192 KGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPP 265 (305)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCS
T ss_pred hccccccccccccc-cccccccccc---cccccceeeecccc-cccccccccccccCCCEEECCC-CccCccChhhccCc
Confidence 45678999999988 7888887777 78999999999995 7999999999999999999988 5798885432
Q ss_pred -cccccCCcceEEEcccc
Q 012933 392 -TSESLVNLGRMMIADCK 408 (453)
Q Consensus 392 -~~~~l~~L~~L~i~~C~ 408 (453)
.....++|+.|++.+.+
T Consensus 266 ~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 266 GYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SCCTTSCCCSEEECCSSS
T ss_pred chhcccCCCCEEECCCCc
Confidence 23456889999999887
No 5
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=6.4e-15 Score=135.29 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred hhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccc
Q 012933 142 EMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLE 221 (453)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 221 (453)
....+++|++|.+.++. +.+..... + ..+++|++|++++|..+++..-..+...+++|++|++++|..+++.....
T Consensus 66 l~~~c~~L~~L~L~~~~-l~~~~~~~-l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~ 141 (284)
T d2astb2 66 ILSQCSKLQNLSLEGLR-LSDPIVNT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141 (284)
T ss_dssp HHTTBCCCSEEECTTCB-CCHHHHHH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHhCCCcccccccccC-CCcHHHHH-H--hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchh
Confidence 34445666666666654 22111111 1 23567777777777766543222334567777777777776654421100
Q ss_pred ccccccCCCCCCCCccceeeeccCC-CcceeccCCCcccCCCCccEEeeecCCCCce
Q 012933 222 EQNADKEHRGPLFPKLYGLRLIDLP-KLKRFCNFTGNIIELPELQHLTIQNCPDMET 277 (453)
Q Consensus 222 ~~~~~~~~~~~~~~~L~~L~L~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 277 (453)
.. ....++|++|.+.+|. .+++. .......++|+|++|++++|..+++
T Consensus 142 ~~-------~~~~~~L~~L~l~~~~~~i~~~-~l~~l~~~~~~L~~L~L~~~~~itd 190 (284)
T d2astb2 142 AV-------AHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKN 190 (284)
T ss_dssp HH-------HHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred hh-------cccccccchhhhcccccccccc-cccccccccccccccccccccCCCc
Confidence 00 0122567777777653 23321 0111234567777777777766554
No 6
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.51 E-value=1.5e-14 Score=134.74 Aligned_cols=93 Identities=9% Similarity=-0.084 Sum_probs=55.9
Q ss_pred CcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc-e
Q 012933 256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ-H 334 (453)
Q Consensus 256 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-~ 334 (453)
.....+++++.+++.++..-...+. +..+++|+.|++++++-.. . ..+.++.+++|++|+++++ +++ .
T Consensus 215 ~~~~~~~~l~~l~~~~~~l~~~~~~----~~~~~~L~~L~Ls~N~l~g---~---iP~~l~~L~~L~~L~Ls~N-~l~g~ 283 (313)
T d1ogqa_ 215 VLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYG---T---LPQGLTQLKFLHSLNVSFN-NLCGE 283 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEE---C---CCGGGGGCTTCCEEECCSS-EEEEE
T ss_pred ccccccccccccccccccccccccc----cccccccccccCccCeecc---c---CChHHhCCCCCCEEECcCC-ccccc
Confidence 4455666777777666543222221 3445577777776653211 0 1124567889999999988 455 4
Q ss_pred ecccCCcccccCCCccceeeccCCCccccC
Q 012933 335 LWKENDESNKAFANLESLEISECSKLQKLV 364 (453)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 364 (453)
+|. + ..+++|+.+++.+++.+...|
T Consensus 284 iP~--~---~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 284 IPQ--G---GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCC--S---TTGGGSCGGGTCSSSEEESTT
T ss_pred CCC--c---ccCCCCCHHHhCCCccccCCC
Confidence 542 2 678889999988866555443
No 7
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.47 E-value=1.7e-13 Score=127.43 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=141.6
Q ss_pred CCcceEeecCCCCcc--ccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcc
Q 012933 85 PSLERVSMTHCPNMK--TFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKE 162 (453)
Q Consensus 85 ~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 162 (453)
.++++|+++++.--. .+|..++++++|++|+++++.+ ..+.+|.++..+++|++|+++++. +..
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~-------------l~g~iP~~i~~L~~L~~L~Ls~N~-l~~ 115 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------------LVGPIPPAIAKLTQLHYLYITHTN-VSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------------EESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccc-------------cccccccccccccccchhhhcccc-ccc
Confidence 468888888764222 4777888888888888886432 223456677778888888888876 333
Q ss_pred cccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCcc-ceee
Q 012933 163 IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKL-YGLR 241 (453)
Q Consensus 163 ~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L-~~L~ 241 (453)
+.... + ..++.|+.++++++... ...|.. +..+++++.++++++.....++.. .... ..+ +.+.
T Consensus 116 ~~~~~-~--~~~~~L~~l~l~~N~~~-~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~---------~~~l-~~l~~~l~ 180 (313)
T d1ogqa_ 116 AIPDF-L--SQIKTLVTLDFSYNALS-GTLPPS-ISSLPNLVGITFDGNRISGAIPDS---------YGSF-SKLFTSMT 180 (313)
T ss_dssp ECCGG-G--GGCTTCCEEECCSSEEE-SCCCGG-GGGCTTCCEEECCSSCCEEECCGG---------GGCC-CTTCCEEE
T ss_pred ccccc-c--cchhhhccccccccccc-ccCchh-hccCcccceeeccccccccccccc---------cccc-cccccccc
Confidence 22221 1 44778888888876433 333443 778888888888876433333220 1112 333 4454
Q ss_pred eccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCc
Q 012933 242 LIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRL 321 (453)
Q Consensus 242 L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L 321 (453)
+.+. .++.. .+..+..+. ...+++..+......+.. ...+++++.+++.++.-. ..+++++.+++|
T Consensus 181 ~~~n-~l~~~--~~~~~~~l~-~~~l~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~~l~-------~~~~~~~~~~~L 246 (313)
T d1ogqa_ 181 ISRN-RLTGK--IPPTFANLN-LAFVDLSRNMLEGDASVL---FGSDKNTQKIHLAKNSLA-------FDLGKVGLSKNL 246 (313)
T ss_dssp CCSS-EEEEE--CCGGGGGCC-CSEEECCSSEEEECCGGG---CCTTSCCSEEECCSSEEC-------CBGGGCCCCTTC
T ss_pred cccc-ccccc--ccccccccc-cccccccccccccccccc---cccccccccccccccccc-------cccccccccccc
Confidence 4433 34432 123333333 334666554433333322 445556666666655211 122344556677
Q ss_pred CEEeecCCCCcc-eecccCCcccccCCCccceeeccCCCcc-ccCCCCCCCCCCCEEecccCccccc
Q 012933 322 RWLELSGLHKVQ-HLWKENDESNKAFANLESLEISECSKLQ-KLVPPSWHLENLEALEVSKCHGLIN 386 (453)
Q Consensus 322 ~~L~l~~~~~l~-~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~ 386 (453)
+.|++++| +++ .+|.. + ..+++|++|++++ +.++ .+|. ..++++|+.+.+++.+.+..
T Consensus 247 ~~L~Ls~N-~l~g~iP~~-l---~~L~~L~~L~Ls~-N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 247 NGLDLRNN-RIYGTLPQG-L---TQLKFLHSLNVSF-NNLCGEIPQ-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CEEECCSS-CCEECCCGG-G---GGCTTCCEEECCS-SEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred ccccCccC-eecccCChH-H---hCCCCCCEEECcC-CcccccCCC-cccCCCCCHHHhCCCccccC
Confidence 77777766 444 34433 2 5667777777776 3444 4553 34566666666666544444
No 8
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.45 E-value=5.3e-12 Score=118.67 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=79.5
Q ss_pred cccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCcc
Q 012933 27 SSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGIL 106 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 106 (453)
.++++|+|+++ .++.+|+. .++|++|++++ .+++.++. .+.+|++|++.++ +++.++.
T Consensus 38 ~~l~~LdLs~~-~L~~lp~~-----------~~~L~~L~Ls~-N~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~--- 95 (353)
T d1jl5a_ 38 RQAHELELNNL-GLSSLPEL-----------PPHLESLVASC-NSLTELPE-----LPQSLKSLLVDNN-NLKALSD--- 95 (353)
T ss_dssp HTCSEEECTTS-CCSCCCSC-----------CTTCSEEECCS-SCCSSCCC-----CCTTCCEEECCSS-CCSCCCS---
T ss_pred cCCCEEEeCCC-CCCCCCCC-----------CCCCCEEECCC-CCCccccc-----chhhhhhhhhhhc-ccchhhh---
Confidence 46788888886 57777752 56788888875 56766643 2467888888875 3555442
Q ss_pred CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC
Q 012933 107 STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT 186 (453)
Q Consensus 107 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 186 (453)
-.+.|++|+++++. + ..++. ...+++|++|++.++. +...+ ...+.+..+.+.++.
T Consensus 96 lp~~L~~L~L~~n~-l--------------~~lp~-~~~l~~L~~L~l~~~~-~~~~~-------~~~~~l~~l~~~~~~ 151 (353)
T d1jl5a_ 96 LPPLLEYLGVSNNQ-L--------------EKLPE-LQNSSFLKIIDVDNNS-LKKLP-------DLPPSLEFIAAGNNQ 151 (353)
T ss_dssp CCTTCCEEECCSSC-C--------------SSCCC-CTTCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC
T ss_pred hccccccccccccc-c--------------ccccc-hhhhccceeecccccc-ccccc-------cccccccchhhcccc
Confidence 12458888887542 1 12221 2346778888877665 22211 123566666666544
Q ss_pred CccccCchhHHhhcCCCcEEEeccC
Q 012933 187 NMSSAIPANLLRCLNNLQWLEVRNC 211 (453)
Q Consensus 187 ~l~~~~~~~~l~~l~~L~~L~l~~~ 211 (453)
.... ..+..++.++.+.+.++
T Consensus 152 ~~~~----~~l~~l~~l~~L~l~~n 172 (353)
T d1jl5a_ 152 LEEL----PELQNLPFLTAIYADNN 172 (353)
T ss_dssp CSSC----CCCTTCTTCCEEECCSS
T ss_pred cccc----ccccccccceecccccc
Confidence 3221 12455677777777654
No 9
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.40 E-value=3.5e-12 Score=115.52 Aligned_cols=175 Identities=16% Similarity=0.076 Sum_probs=107.4
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.+++++|+++++ .++.+ +...+..+++|++|+++++ .++.++.. . .+++|++|+++++. ++..
T Consensus 30 p~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l~~~----------~-~l~~L~~L~Ls~N~-l~~~-- 92 (266)
T d1p9ag_ 30 PKDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD----------G-TLPVLGTLDLSHNQ-LQSL-- 92 (266)
T ss_dssp CTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC----------S-CCTTCCEEECCSSC-CSSC--
T ss_pred CcCCCEEECcCC-cCCCc-CHHHhhccccccccccccc-cccccccc----------c-cccccccccccccc-cccc--
Confidence 468999999985 45554 4455788999999999886 45554321 1 23788888888763 4442
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
+..+..+++|+.|+++++... .++... ...+.+++.|++.++..-.+.. .....+++++.++++++ .++
T Consensus 93 -~~~~~~l~~L~~L~l~~~~~~-~~~~~~--~~~l~~l~~L~l~~n~l~~l~~------~~~~~l~~l~~l~l~~N-~l~ 161 (266)
T d1p9ag_ 93 -PLLGQTLPALTVLDVSFNRLT-SLPLGA--LRGLGELQELYLKGNELKTLPP------GLLTPTPKLEKLSLANN-NLT 161 (266)
T ss_dssp -CCCTTTCTTCCEEECCSSCCC-CCCSST--TTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECTTS-CCS
T ss_pred -ccccccccccccccccccccc-eeeccc--cccccccccccccccccceecc------ccccccccchhcccccc-ccc
Confidence 356677888888888876533 333322 4455566666666542211100 11224566666666666 566
Q ss_pred eecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
.++.+.| ..+++|++|++++ +.++.+|.++..+++|+.|.+++
T Consensus 162 ~~~~~~~---~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 162 ELPAGLL---NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp CCCTTTT---TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred ccCcccc---ccccccceeeccc-CCCcccChhHCCCCCCCEEEecC
Confidence 6665555 5666666666666 45666666666666666666655
No 10
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=5.2e-12 Score=115.54 Aligned_cols=203 Identities=17% Similarity=0.132 Sum_probs=143.7
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.+++++|+++++ +++.+ +...+..+++|++|+++++ .+..+... ... ..+.++++.......++.+
T Consensus 31 p~~~~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~ls~n-~l~~i~~~--------~~~-~~~~~~~l~~~~~~~~~~l-- 96 (284)
T d1ozna_ 31 PAASQRIFLHGN-RISHV-PAASFRACRNLTILWLHSN-VLARIDAA--------AFT-GLALLEQLDLSDNAQLRSV-- 96 (284)
T ss_dssp CTTCSEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECTT--------TTT-TCTTCCEEECCSCTTCCCC--
T ss_pred CCCCCEEECcCC-cCCCC-CHHHhhccccccccccccc-cccccccc--------ccc-ccccccccccccccccccc--
Confidence 467888999885 46655 4455788889999998875 34433220 111 2266777777666666665
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
.+..+.++++|+.|+++++.. ..++... .....+|+.+++.++.--.++ ...+..+++|++|+++++ .++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~~-~~~~~~~--~~~~~~L~~l~l~~N~l~~i~------~~~f~~~~~L~~L~l~~N-~l~ 166 (284)
T d1ozna_ 97 DPATFHGLGRLHTLHLDRCGL-QELGPGL--FRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGN-RIS 166 (284)
T ss_dssp CTTTTTTCTTCCEEECTTSCC-CCCCTTT--TTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS-CCC
T ss_pred cchhhcccccCCEEecCCccc-ccccccc--cchhcccchhhhccccccccC------hhHhccccchhhcccccC-ccc
Confidence 245678889999999988653 3333332 556678888888876321111 012346789999999999 789
Q ss_pred eecccCCcccccCCCccceeeccCCCcccc-CCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKL-VPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (453)
.++...| ..+++|+++.+.++ .++.+ |..+..+++|++|++++ +++..++.. ....+++|++|++++
T Consensus 167 ~l~~~~f---~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~-~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 167 SVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTE-ALAPLRALQYLRLND 234 (284)
T ss_dssp EECTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHH-HHTTCTTCCEEECCS
T ss_pred ccchhhh---ccccccchhhhhhc-cccccChhHhhhhhhcccccccc-ccccccccc-ccccccccCEEEecC
Confidence 9988888 79999999999995 45555 56788999999999987 667777653 456789999999975
No 11
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.36 E-value=3.2e-13 Score=123.69 Aligned_cols=217 Identities=19% Similarity=0.166 Sum_probs=138.8
Q ss_pred cccCcccccceEEeccccchhh-hhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCcc
Q 012933 21 FQVGIPSSLVNLNVSRCDKIEE-IIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMK 99 (453)
Q Consensus 21 ~~~~~~~~L~~L~L~~c~~l~~-i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 99 (453)
+.......|++|++++|..... +..- ...+++|++|++++|. +++.... ....+++|++|++++|.+++
T Consensus 40 ~~~~~~~~L~~LdLs~~~i~~~~l~~l--------~~~c~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~Ls~c~~it 109 (284)
T d2astb2 40 AEHFSPFRVQHMDLSNSVIEVSTLHGI--------LSQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVRLNLSGCSGFS 109 (284)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHH--------HTTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSEEECTTCBSCC
T ss_pred hhhccCCCCCEEECCCCccCHHHHHHH--------HHhCCCcccccccccC-CCcHHHH-HHhcCCCCcCcccccccccc
Confidence 3344567899999999853332 2222 2238999999999974 4332222 24568999999999999887
Q ss_pred c--cccCccCCCCcceEEeccccccccccccCCccchhHHHHHHh-hcCCCCccEEEEeeCC-CCcccccCCCCCcCccC
Q 012933 100 T--FSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEE-MIGFRDMEYLQLSYFP-HLKEIWHGQALPVSFFN 175 (453)
Q Consensus 100 ~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~l~~~~~~~~l~~~~l~ 175 (453)
+ +..-...+++|++|++++|..+. ...+... ...+++|+.|+++++. .+.+..... +. ..+|
T Consensus 110 d~~l~~l~~~~~~L~~L~ls~c~~~~------------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-l~-~~~~ 175 (284)
T d2astb2 110 EFALQTLLSSCSRLDELNLSWCFDFT------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LV-RRCP 175 (284)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCC------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HH-HHCT
T ss_pred ccccchhhHHHHhccccccccccccc------------cccchhhhcccccccchhhhcccccccccccccc-cc-cccc
Confidence 4 22223458999999999886532 1222222 2335789999998864 233211111 11 3589
Q ss_pred CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (453)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 255 (453)
+|++|++++|..+++.. ...+..+++|++|++++|..+++... ..+ ..+ |+|++|++.+|-.-..+ .
T Consensus 176 ~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l----~~L----~~~-~~L~~L~l~~~~~d~~l---~ 242 (284)
T d2astb2 176 NLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETL----LEL----GEI-PTLKTLQVFGIVPDGTL---Q 242 (284)
T ss_dssp TCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGG----GGG----GGC-TTCCEEECTTSSCTTCH---H
T ss_pred cccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHH----HHH----hcC-CCCCEEeeeCCCCHHHH---H
Confidence 99999999998887653 34477899999999999988876422 111 123 89999999998322221 1
Q ss_pred CcccCCCCccEEeeecCCCCcee
Q 012933 256 GNIIELPELQHLTIQNCPDMETF 278 (453)
Q Consensus 256 ~~~~~l~~L~~L~l~~c~~l~~~ 278 (453)
.....+|+|+ + +|..++..
T Consensus 243 ~l~~~lp~L~---i-~~~~ls~~ 261 (284)
T d2astb2 243 LLKEALPHLQ---I-NCSHFTTI 261 (284)
T ss_dssp HHHHHSTTSE---E-SCCCSCCT
T ss_pred HHHHhCcccc---c-cCccCCCC
Confidence 1223466665 3 45555544
No 12
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.32 E-value=1.3e-11 Score=108.88 Aligned_cols=98 Identities=26% Similarity=0.314 Sum_probs=50.2
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.+.++.+.+.++... .. ..+...++|+.|.+.++. +.+.... . .+++|++|+++++ .++++
T Consensus 128 ~~~~~~l~~~~~~~~-~~---~~~~~~~~L~~L~l~~n~-~~~~~~l----------~-~l~~L~~L~Ls~n-~l~~l-- 188 (227)
T d1h6ua2 128 LSNLQVLYLDLNQIT-NI---SPLAGLTNLQYLSIGNAQ-VSDLTPL----------A-NLSKLTTLKADDN-KISDI-- 188 (227)
T ss_dssp CTTCCEEECCSSCCC-CC---GGGGGCTTCCEEECCSSC-CCCCGGG----------T-TCTTCCEEECCSS-CCCCC--
T ss_pred ccchhhhhchhhhhc-hh---hhhccccccccccccccc-cccchhh----------c-ccccceecccCCC-ccCCC--
Confidence 455666666554321 11 124456666666665542 2221110 1 1266666666665 34443
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLT 297 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~ 297 (453)
..+.++++|+.|++++| ++++++. ++.+++|+.|+++
T Consensus 189 --~~l~~l~~L~~L~Ls~N-~lt~i~~----l~~l~~L~~L~ls 225 (227)
T d1h6ua2 189 --SPLASLPNLIEVHLKNN-QISDVSP----LANTSNLFIVTLT 225 (227)
T ss_dssp --GGGGGCTTCCEEECTTS-CCCBCGG----GTTCTTCCEEEEE
T ss_pred --hhhcCCCCCCEEECcCC-cCCCCcc----cccCCCCCEEEee
Confidence 23556666777777665 4555432 4455666666664
No 13
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.31 E-value=1.4e-11 Score=108.62 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=104.1
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
+.+|++|++.+|. ++++ + .+..+++|+.|+++++ .+..+.... .+++|+++.+.++. ++.+
T Consensus 40 l~~L~~L~l~~~~-i~~l-~--~l~~l~~L~~L~ls~n-~i~~~~~l~-----------~l~~l~~l~~~~n~-~~~i-- 100 (227)
T d1h6ua2 40 LDGITTLSAFGTG-VTTI-E--GVQYLNNLIGLELKDN-QITDLAPLK-----------NLTKITELELSGNP-LKNV-- 100 (227)
T ss_dssp HHTCCEEECTTSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCCGGGT-----------TCCSCCEEECCSCC-CSCC--
T ss_pred cCCcCEEECCCCC-CCcc-h--hHhcCCCCcEeecCCc-eeecccccc-----------cccccccccccccc-cccc--
Confidence 4556666666553 3332 1 2455666666666554 233221111 12556666655442 2332
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcc
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQ 333 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 333 (453)
..+..+++|+.+.++++......+ +...+.++.+.+.++.... .......++|+.|.++++ .+.
T Consensus 101 --~~l~~l~~L~~l~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n-~~~ 164 (227)
T d1h6ua2 101 --SAIAGLQSIKTLDLTSTQITDVTP-----LAGLSNLQVLYLDLNQITN--------ISPLAGLTNLQYLSIGNA-QVS 164 (227)
T ss_dssp --GGGTTCTTCCEEECTTSCCCCCGG-----GTTCTTCCEEECCSSCCCC--------CGGGGGCTTCCEEECCSS-CCC
T ss_pred --ccccccccccccccccccccccch-----hccccchhhhhchhhhhch--------hhhhcccccccccccccc-ccc
Confidence 234556666666666554322111 2223345555554432211 012235578888888777 444
Q ss_pred eecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933 334 HLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 334 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (453)
+... + +++++|+.|++++| ++++++. +.++++|++|++++| ++++++. .+++++|++|++++
T Consensus 165 ~~~~--l---~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 165 DLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN 226 (227)
T ss_dssp CCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred cchh--h---cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence 4332 2 67788888888885 6777654 567888888888885 6887753 45778888888764
No 14
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.31 E-value=6.6e-12 Score=113.66 Aligned_cols=196 Identities=16% Similarity=0.108 Sum_probs=143.6
Q ss_pred CCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccC
Q 012933 175 NNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNF 254 (453)
Q Consensus 175 ~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 254 (453)
..+.+++.++ .+++.+ |.. + .+++++|+++++ .++.++... .. .+++|++|++.++ .++.++
T Consensus 10 ~~~~~v~C~~-~~L~~i-P~~-l--p~~l~~L~Ls~N-~i~~l~~~~--------f~-~l~~L~~L~L~~N-~l~~l~-- 71 (266)
T d1p9ag_ 10 ASHLEVNCDK-RNLTAL-PPD-L--PKDTTILHLSEN-LLYTFSLAT--------LM-PYTRLTQLNLDRA-ELTKLQ-- 71 (266)
T ss_dssp TTCCEEECTT-SCCSSC-CSC-C--CTTCCEEECTTS-CCSEEEGGG--------GT-TCTTCCEEECTTS-CCCEEE--
T ss_pred CCCeEEEccC-CCCCee-CcC-c--CcCCCEEECcCC-cCCCcCHHH--------hh-ccccccccccccc-cccccc--
Confidence 4555666555 357665 544 2 258999999985 566554311 11 2389999999987 577763
Q ss_pred CCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcce
Q 012933 255 TGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQH 334 (453)
Q Consensus 255 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 334 (453)
.+..+++|+.|+++++. +...+.. +..+++|+.|+++++....+. ......++++++|+++++ .++.
T Consensus 72 --~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~l~~L~~L~l~~~~~~~~~------~~~~~~l~~l~~L~l~~n-~l~~ 138 (266)
T d1p9ag_ 72 --VDGTLPVLGTLDLSHNQ-LQSLPLL---GQTLPALTVLDVSFNRLTSLP------LGALRGLGELQELYLKGN-ELKT 138 (266)
T ss_dssp --CCSCCTTCCEEECCSSC-CSSCCCC---TTTCTTCCEEECCSSCCCCCC------SSTTTTCTTCCEEECTTS-CCCC
T ss_pred --ccccccccccccccccc-ccccccc---cccccccccccccccccceee------cccccccccccccccccc-ccce
Confidence 35679999999999864 5544443 677889999999987443311 122346789999999998 7888
Q ss_pred ecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 335 LWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
++...+ ..++.|+.+++++ ++++.++.. +..+++|++|++++ ++++.+|.. +..+++|++|++.+.|
T Consensus 139 l~~~~~---~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~--~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 139 LPPGLL---TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKG--FFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CCTTTT---TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTTCCCSEEECCSCC
T ss_pred eccccc---cccccchhccccc-ccccccCccccccccccceeeccc-CCCcccChh--HCCCCCCCEEEecCCC
Confidence 888777 7899999999999 578888764 67899999999988 679998763 4467999999998533
No 15
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=8.2e-11 Score=104.58 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=122.6
Q ss_pred cCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceecc
Q 012933 174 FNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCN 253 (453)
Q Consensus 174 l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 253 (453)
.+++++|+++++ .++.+ +...+.++++|++|+++++.....++. . ..... ++++++.+..+.++..+
T Consensus 28 ~~~l~~L~Ls~n-~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~-~-------~f~~l-~~l~~l~~~~~n~l~~~-- 94 (242)
T d1xwdc1 28 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA-D-------VFSNL-PKLHEIRIEKANNLLYI-- 94 (242)
T ss_dssp CSCCSEEEEESC-CCCEE-CTTTTTTCTTCCEEEEESCTTCCEECS-S-------SEESC-TTCCEEEEECCTTCCEE--
T ss_pred CCCCCEEECcCC-cCCcc-ChhHhhccchhhhhhhccccccceeec-c-------ccccc-ccccccccccccccccc--
Confidence 467888888875 35544 444577788888888887654443211 0 00112 67788877777777665
Q ss_pred CCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccc--cccccccccccccccccC-CCcCEEeecCCC
Q 012933 254 FTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEE--NFLLAHQVQPLFDEKVSF-PRLRWLELSGLH 330 (453)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~l~~~~~~~~~l-~~L~~L~l~~~~ 330 (453)
.+..+..+++|+.+++.++. +...+.. ..+.+++.+...... .+. .+. ......+ ..++.|+++++
T Consensus 95 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~----~~~~~l~~l~~~~~~n~~l~---~i~--~~~~~~~~~~l~~L~l~~n- 163 (242)
T d1xwdc1 95 NPEAFQNLPNLQYLLISNTG-IKHLPDV----HKIHSLQKVLLDIQDNINIH---TIE--RNSFVGLSFESVILWLNKN- 163 (242)
T ss_dssp CTTSEECCTTCCEEEEESCC-CCSCCCC----TTTCBSSCEEEEEESCTTCC---EEC--TTSSTTSBSSCEEEECCSS-
T ss_pred ccccccccccccccccchhh-hcccccc----cccccccccccccccccccc---ccc--ccccccccccceeeecccc-
Confidence 34567888888888888864 3333322 122233333322111 111 000 0011122 46777888776
Q ss_pred CcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcccc
Q 012933 331 KVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIADCK 408 (453)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 408 (453)
.++.++...+ ..++++++....++.++++|.+ +.++++|++|++++ ++++.++.. .+.++++|+.+++.++.
T Consensus 164 ~l~~i~~~~~----~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~l~~~~l~ 236 (242)
T d1xwdc1 164 GIQEIHNCAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY-GLENLKKLRARSTYNLK 236 (242)
T ss_dssp CCCEECTTTT----TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSS-SCTTCCEEESSSEESSS
T ss_pred cccccccccc----cchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHH-HHcCCcccccCcCCCCC
Confidence 6777776664 5667777776666788888875 57789999999977 568887663 44455566555554433
No 16
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.22 E-value=4.9e-11 Score=103.73 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=94.5
Q ss_pred ccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceec
Q 012933 173 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFC 252 (453)
Q Consensus 173 ~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 252 (453)
.+.+|++|++++|. +++.. .+..+++|++|+++++ +++++.... .+++|++|++.++ .++++
T Consensus 44 ~L~~L~~L~l~~~~-i~~l~---~l~~l~~L~~L~L~~n-~i~~l~~~~-----------~l~~L~~L~l~~n-~i~~l- 105 (210)
T d1h6ta2 44 ELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLA-----------NLKNLGWLFLDEN-KVKDL- 105 (210)
T ss_dssp HHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSS-CCCCG-
T ss_pred HhcCccEEECcCCC-CCCch---hHhhCCCCCEEeCCCc-cccCccccc-----------cCccccccccccc-ccccc-
Confidence 35677788777763 33332 2566777777777775 344432211 1266677776654 34443
Q ss_pred cCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCc
Q 012933 253 NFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKV 332 (453)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 332 (453)
..+..+++|+.|++.++... .+ +....+++++.++++++ .+
T Consensus 106 ---~~l~~l~~L~~L~l~~~~~~-~~----------------------------------~~l~~l~~l~~l~~~~n-~l 146 (210)
T d1h6ta2 106 ---SSLKDLKKLKSLSLEHNGIS-DI----------------------------------NGLVHLPQLESLYLGNN-KI 146 (210)
T ss_dssp ---GGGTTCTTCCEEECTTSCCC-CC----------------------------------GGGGGCTTCCEEECCSS-CC
T ss_pred ---cccccccccccccccccccc-cc----------------------------------ccccccccccccccccc-cc
Confidence 23555666666666654321 11 12234566677776665 34
Q ss_pred ceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcceEEEcc
Q 012933 333 QHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGRMMIAD 406 (453)
Q Consensus 333 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 406 (453)
++.... ..+++|+.++++++ .+++++. +.++++|++|+++++ .+++++. ..++++|++|++++
T Consensus 147 ~~~~~~-----~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 147 TDITVL-----SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS 209 (210)
T ss_dssp CCCGGG-----GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred cccccc-----cccccccccccccc-ccccccc-ccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence 443321 46677777777774 4555543 556777777777663 5766642 44667777777753
No 17
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.19 E-value=4.7e-10 Score=104.99 Aligned_cols=300 Identities=15% Similarity=0.081 Sum_probs=154.7
Q ss_pred hhhhcccchhhcccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCc
Q 012933 8 FFNIHTHAHTFAYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSL 87 (453)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 87 (453)
.+++..++ +..++. .+++|++|+++++ +++++|.. +.+|+.|++.++ .++.+.. -.+.|
T Consensus 42 ~LdLs~~~-L~~lp~--~~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~l~~n-~l~~l~~-----lp~~L 100 (353)
T d1jl5a_ 42 ELELNNLG-LSSLPE--LPPHLESLVASCN-SLTELPEL-----------PQSLKSLLVDNN-NLKALSD-----LPPLL 100 (353)
T ss_dssp EEECTTSC-CSCCCS--CCTTCSEEECCSS-CCSSCCCC-----------CTTCCEEECCSS-CCSCCCS-----CCTTC
T ss_pred EEEeCCCC-CCCCCC--CCCCCCEEECCCC-CCcccccc-----------hhhhhhhhhhhc-ccchhhh-----hcccc
Confidence 34444332 334443 3689999999975 89888864 568999999883 3444321 12569
Q ss_pred ceEeecCCCCccccccCccCCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCC
Q 012933 88 ERVSMTHCPNMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQ 167 (453)
Q Consensus 88 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 167 (453)
++|+++++ .+..+|. ...+++|++++++++... ..+ .....+..+.+..........
T Consensus 101 ~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~~~~~~---------------~~~---~~~~~l~~l~~~~~~~~~~~~--- 157 (353)
T d1jl5a_ 101 EYLGVSNN-QLEKLPE-LQNSSFLKIIDVDNNSLK---------------KLP---DLPPSLEFIAAGNNQLEELPE--- 157 (353)
T ss_dssp CEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCS---------------CCC---CCCTTCCEEECCSSCCSSCCC---
T ss_pred cccccccc-ccccccc-hhhhccceeecccccccc---------------ccc---cccccccchhhcccccccccc---
Confidence 99999987 4777874 577999999999865321 000 112445555554443222111
Q ss_pred CCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCC
Q 012933 168 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPK 247 (453)
Q Consensus 168 ~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 247 (453)
...++.++.+.+.++... .. +. .....+.+...+ ..+..++. .. .++.|+.+.+.++..
T Consensus 158 ---l~~l~~l~~L~l~~n~~~-~~-~~----~~~~~~~l~~~~-~~~~~~~~----------~~-~l~~L~~l~l~~n~~ 216 (353)
T d1jl5a_ 158 ---LQNLPFLTAIYADNNSLK-KL-PD----LPLSLESIVAGN-NILEELPE----------LQ-NLPFLTTIYADNNLL 216 (353)
T ss_dssp ---CTTCTTCCEEECCSSCCS-SC-CC----CCTTCCEEECCS-SCCSSCCC----------CT-TCTTCCEEECCSSCC
T ss_pred ---ccccccceeccccccccc-cc-cc----cccccccccccc-cccccccc----------cc-ccccccccccccccc
Confidence 133566666666654321 11 10 111122222222 11111110 01 114555555544321
Q ss_pred cceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccc-----cccccc---cccc-ccccc-ccc
Q 012933 248 LKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSE-----ENFLLA---HQVQ-PLFDE-KVS 317 (453)
Q Consensus 248 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~-----~~~~~~---~~l~-~~~~~-~~~ 317 (453)
- .++ ...+++..+.+....... .+.. ..++...++... ..+... .... ..+.. ...
T Consensus 217 ~-~~~------~~~~~l~~~~~~~~~~~~-~~~~------~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 282 (353)
T d1jl5a_ 217 K-TLP------DLPPSLEALNVRDNYLTD-LPEL------PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282 (353)
T ss_dssp S-SCC------SCCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC
T ss_pred c-ccc------cccccccccccccccccc-cccc------cccccccccccccccccccccchhcccccccCcccccccc
Confidence 1 110 112233333333321110 0000 001111111000 000000 0000 00011 124
Q ss_pred CCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccC
Q 012933 318 FPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLV 397 (453)
Q Consensus 318 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 397 (453)
+++|++|++++| .++.++ ..+++|+.|++++| .++++|.. +++|++|++++|+ ++.+|. .+ .
T Consensus 283 ~~~L~~L~Ls~N-~l~~lp-------~~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~--~~---~ 344 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIELP-------ALPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPD--IP---E 344 (353)
T ss_dssp CTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCC--CC---T
T ss_pred CCCCCEEECCCC-ccCccc-------cccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCc--cc---c
Confidence 689999999998 677776 45789999999884 68888863 5789999998864 998875 34 4
Q ss_pred CcceEEE
Q 012933 398 NLGRMMI 404 (453)
Q Consensus 398 ~L~~L~i 404 (453)
+|+.|.+
T Consensus 345 ~L~~L~~ 351 (353)
T d1jl5a_ 345 SVEDLRM 351 (353)
T ss_dssp TCCEEEC
T ss_pred ccCeeEC
Confidence 5777765
No 18
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.19 E-value=1.2e-10 Score=100.27 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=50.3
Q ss_pred ccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccc
Q 012933 316 VSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 316 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
..+++|+.|+++++ .+..++ .+ ..+++|++|++.+| .+++++. +.++++|++|+++++ ++++++. ...
T Consensus 125 ~~l~~L~~L~l~~n-~l~~~~--~l---~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~---l~~ 192 (199)
T d2omxa2 125 KNLTNLNRLELSSN-TISDIS--AL---SGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSN-KVSDISV---LAK 192 (199)
T ss_dssp TTCTTCSEEECCSS-CCCCCG--GG---TTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGG
T ss_pred chhhhhHHhhhhhh-hhcccc--cc---cccccccccccccc-cccCCcc-ccCCCCCCEEECCCC-CCCCCcc---ccC
Confidence 35677888888777 455443 12 57788888888874 5666653 567788888888775 5777643 456
Q ss_pred cCCcceE
Q 012933 396 LVNLGRM 402 (453)
Q Consensus 396 l~~L~~L 402 (453)
+++|++|
T Consensus 193 L~~L~~L 199 (199)
T d2omxa2 193 LTNLESL 199 (199)
T ss_dssp CTTCSEE
T ss_pred CCCCCcC
Confidence 6777764
No 19
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.17 E-value=2.6e-10 Score=103.90 Aligned_cols=211 Identities=18% Similarity=0.186 Sum_probs=115.1
Q ss_pred CccccccCccCCCCcceEEeccccccccccccCCccchhHHHHH-HhhcCCCCccEEEEeeCCCCcccccCCCCCcCccC
Q 012933 97 NMKTFSHGILSTPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCY-EEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFN 175 (453)
Q Consensus 97 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~ 175 (453)
+++.+|..+ .+++++|+++++ .+..++ ....++++|++|+++++. +..+.... + ..++
T Consensus 22 ~L~~iP~~i--p~~~~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~-~--~~~~ 80 (284)
T d1ozna_ 22 GLQAVPVGI--PAASQRIFLHGN---------------RISHVPAASFRACRNLTILWLHSNV-LARIDAAA-F--TGLA 80 (284)
T ss_dssp CCSSCCTTC--CTTCSEEECTTS---------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCT
T ss_pred CCCccCCCC--CCCCCEEECcCC---------------cCCCCCHHHhhcccccccccccccc-cccccccc-c--cccc
Confidence 477777543 256777877743 222222 234556667777776654 44333322 1 2355
Q ss_pred CCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccceeeeccCCCcceeccCC
Q 012933 176 NLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLYGLRLIDLPKLKRFCNFT 255 (453)
Q Consensus 176 ~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 255 (453)
.++++.+.....++.. +...+..+++|+.|+++++.. ..+.. ......++|+.+.+.+. .++.+ .+
T Consensus 81 ~~~~l~~~~~~~~~~l-~~~~~~~l~~L~~L~l~~n~~-~~~~~---------~~~~~~~~L~~l~l~~N-~l~~i--~~ 146 (284)
T d1ozna_ 81 LLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGL-QELGP---------GLFRGLAALQYLYLQDN-ALQAL--PD 146 (284)
T ss_dssp TCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCT---------TTTTTCTTCCEEECCSS-CCCCC--CT
T ss_pred cccccccccccccccc-cchhhcccccCCEEecCCccc-ccccc---------cccchhcccchhhhccc-ccccc--Ch
Confidence 6666666655555544 233356666666666666432 11111 00111245566665543 23333 12
Q ss_pred CcccCCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCccee
Q 012933 256 GNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHL 335 (453)
Q Consensus 256 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l 335 (453)
..+..+++|++|+++++ ++..++... ...+++|++++++++ .+..+
T Consensus 147 ~~f~~~~~L~~L~l~~N-~l~~l~~~~--------------------------------f~~l~~L~~l~l~~N-~l~~i 192 (284)
T d1ozna_ 147 DTFRDLGNLTHLFLHGN-RISSVPERA--------------------------------FRGLHSLDRLLLHQN-RVAHV 192 (284)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTT--------------------------------TTTCTTCCEEECCSS-CCCEE
T ss_pred hHhccccchhhcccccC-cccccchhh--------------------------------hccccccchhhhhhc-ccccc
Confidence 33445556666666554 233333221 234567777777777 56667
Q ss_pred cccCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEeccc
Q 012933 336 WKENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK 380 (453)
Q Consensus 336 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 380 (453)
....| ..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 193 ~~~~f---~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 193 HPHAF---RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234 (284)
T ss_dssp CTTTT---TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ChhHh---hhhhhcccccccc-cccccccccccccccccCEEEecC
Confidence 66666 7778888888887 45666554 456778888888866
No 20
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.12 E-value=8.7e-10 Score=97.73 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=44.8
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccC
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLT 389 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~ 389 (453)
..++++.+...++..++.++...| .++++|++|++++ ++++.+|.+ +.++++|+.+++ .+++.+|.
T Consensus 174 ~~~~l~~~~~l~~n~l~~l~~~~f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~---~~l~~lp~ 240 (242)
T d1xwdc1 174 NGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISR-TRIHSLPSYGLENLKKLRARST---YNLKKLPT 240 (242)
T ss_dssp TTCCEEEEECTTCTTCCCCCTTTT---TTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSE---ESSSCSCC
T ss_pred cchhhhccccccccccccccHHHh---cCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcC---CCCCcCCC
Confidence 345666666555557888888877 7899999999998 568888764 444444444444 55655543
No 21
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.11 E-value=2.9e-10 Score=98.69 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=112.0
Q ss_pred CCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCCCccccCchhHHhhcCCCcEEEeccCccchhhhccccccc
Q 012933 146 FRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNA 225 (453)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 225 (453)
+.++++|+++++. +..+.. . ..+++|++|+++++ .+++..+ +..+++|+.|+++++ .+++++...
T Consensus 45 L~~L~~L~l~~~~-i~~l~~-l----~~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L~l~~n-~i~~l~~l~---- 109 (210)
T d1h6ta2 45 LNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSSLK---- 109 (210)
T ss_dssp HHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGGGT----
T ss_pred hcCccEEECcCCC-CCCchh-H----hhCCCCCEEeCCCc-cccCccc---cccCccccccccccc-ccccccccc----
Confidence 4678999998876 544332 2 56899999999997 4665433 578999999999986 566553311
Q ss_pred ccCCCCCCCCccceeeeccCCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccc
Q 012933 226 DKEHRGPLFPKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLA 305 (453)
Q Consensus 226 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 305 (453)
.+++|+.|.+.++.. ..+ ..+..+++++.++++++. +.+.+. .
T Consensus 110 -------~l~~L~~L~l~~~~~-~~~----~~l~~l~~l~~l~~~~n~-l~~~~~----~-------------------- 152 (210)
T d1h6ta2 110 -------DLKKLKSLSLEHNGI-SDI----NGLVHLPQLESLYLGNNK-ITDITV----L-------------------- 152 (210)
T ss_dssp -------TCTTCCEEECTTSCC-CCC----GGGGGCTTCCEEECCSSC-CCCCGG----G--------------------
T ss_pred -------ccccccccccccccc-ccc----cccccccccccccccccc-cccccc----c--------------------
Confidence 238999999988763 332 457778899999987753 322211 1
Q ss_pred ccccccccccccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEeccc
Q 012933 306 HQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSK 380 (453)
Q Consensus 306 ~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 380 (453)
..+++|++++++++ .+++++. + ..+++|++|++++| .+++++ .+.++++|++|++++
T Consensus 153 ----------~~l~~L~~l~l~~n-~l~~i~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 153 ----------SRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ----------GGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred ----------cccccccccccccc-ccccccc--c---cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence 24567777777776 4555432 2 57778888888774 577765 366778888887753
No 22
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.10 E-value=9.9e-11 Score=100.84 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=15.7
Q ss_pred CccceeeeccCCCcceeccCCCcccCCCCccEEeeecC
Q 012933 235 PKLYGLRLIDLPKLKRFCNFTGNIIELPELQHLTIQNC 272 (453)
Q Consensus 235 ~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 272 (453)
++|++|.+.++ .++++ ..+.++++|+.|+++++
T Consensus 150 ~~L~~L~l~~n-~l~~l----~~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 150 TSLQQLNFSSN-QVTDL----KPLANLTTLERLDISSN 182 (199)
T ss_dssp TTCSEEECCSS-CCCCC----GGGTTCTTCCEEECCSS
T ss_pred ccccccccccc-cccCC----ccccCCCCCCEEECCCC
Confidence 44555555443 23332 23445555555555554
No 23
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.79 E-value=2.8e-09 Score=88.10 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=29.7
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEeccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSK 380 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~ 380 (453)
.+++|++|++++| .++.++...+ ..+++|+.|++++ +.+++++. .+..+++|++|++++
T Consensus 61 ~l~~L~~L~ls~N-~i~~l~~~~~---~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~ 121 (162)
T d1a9na_ 61 LLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR 121 (162)
T ss_dssp CCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred cCcchhhhhcccc-cccCCCcccc---ccccccccceecc-ccccccccccccccccccchhhcCC
Confidence 4455555555555 4555544433 4455555555555 23444432 234455555555555
No 24
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.61 E-value=1.1e-07 Score=80.75 Aligned_cols=106 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred CCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccCCc
Q 012933 262 PELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKENDE 341 (453)
Q Consensus 262 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 341 (453)
++++.|++++..--...+... +..+++|+.|+++++....+. ......+++|++|+++++ +++.++.+.|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~--f~~l~~L~~L~L~~N~i~~~~------~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F- 98 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIE------PNAFEGASHIQELQLGEN-KIKEISNKMF- 98 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCS--GGGCTTCCEEECCSSCCCCBC------TTTTTTCTTCCEEECCSC-CCCEECSSSS-
T ss_pred CCCCEEEeCCCCCcccccccc--cCCCceEeeeecccccccccc------ccccccccccceeeeccc-cccccCHHHH-
Confidence 578888887754322333333 566667777777665322211 122335567777777776 5667766666
Q ss_pred ccccCCCccceeeccCCCccccCCC-CCCCCCCCEEeccc
Q 012933 342 SNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSK 380 (453)
Q Consensus 342 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~ 380 (453)
.++++|++|++++ +.++.++.+ +..+++|++|++++
T Consensus 99 --~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 99 --LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp --TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred --hCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence 6677777777777 556666553 45667777777755
No 25
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.59 E-value=7.8e-09 Score=85.36 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=80.5
Q ss_pred cccccCcccccceEEeccccchhhhhcccccccccccccccccceeeccccccccccccccccccCCCcceEeecCCCCc
Q 012933 19 AYFQVGIPSSLVNLNVSRCDKIEEIIRHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNM 98 (453)
Q Consensus 19 ~~~~~~~~~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 98 (453)
..+.+..+..+++|+|+++ +++.|+..+.. +++|+.|++++ +.++.+. ....+++|++|++++|. +
T Consensus 10 ~~~~~~n~~~lr~L~L~~n-~I~~i~~~~~~--------l~~L~~L~Ls~-N~i~~l~---~~~~l~~L~~L~ls~N~-i 75 (162)
T d1a9na_ 10 QAAQYTNAVRDRELDLRGY-KIPVIENLGAT--------LDQFDAIDFSD-NEIRKLD---GFPLLRRLKTLLVNNNR-I 75 (162)
T ss_dssp TSCEEECTTSCEEEECTTS-CCCSCCCGGGG--------TTCCSEEECCS-SCCCEEC---CCCCCSSCCEEECCSSC-C
T ss_pred hhHhccCcCcCcEEECCCC-CCCccCccccc--------cccCCEEECCC-CCCCccC---CcccCcchhhhhccccc-c
Confidence 3455666778888888886 67777643233 77888888888 3465552 14567888888888864 6
Q ss_pred cccccCcc-CCCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCC
Q 012933 99 KTFSHGIL-STPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNL 177 (453)
Q Consensus 99 ~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L 177 (453)
+.++.++. .+++|+.|+++ ++. +..+.....+ ..+++|
T Consensus 76 ~~l~~~~~~~l~~L~~L~L~--------------------------------------~N~-i~~~~~l~~l--~~l~~L 114 (162)
T d1a9na_ 76 CRIGEGLDQALPDLTELILT--------------------------------------NNS-LVELGDLDPL--ASLKSL 114 (162)
T ss_dssp CEECSCHHHHCTTCCEEECC--------------------------------------SCC-CCCGGGGGGG--GGCTTC
T ss_pred cCCCccccccccccccceec--------------------------------------ccc-cccccccccc--cccccc
Confidence 66554432 35555555555 433 2222111101 346778
Q ss_pred cEEEecCCCCccccCc--hhHHhhcCCCcEEEec
Q 012933 178 ARLVVDDCTNMSSAIP--ANLLRCLNNLQWLEVR 209 (453)
Q Consensus 178 ~~L~l~~c~~l~~~~~--~~~l~~l~~L~~L~l~ 209 (453)
++|++++++ ++.... ..++..+++|+.|+-.
T Consensus 115 ~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 115 TYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred chhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 888888764 332211 2346778888888643
No 26
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.55 E-value=8.7e-08 Score=74.99 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=55.4
Q ss_pred cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCccc
Q 012933 315 KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSE 394 (453)
Q Consensus 315 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 394 (453)
++.+++|++|+++++ .+++++.. + ..+++|+.|++++ +.++.++. +..+++|++|++++ +++++++......
T Consensus 16 l~~l~~L~~L~ls~N-~l~~lp~~-~---~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~ 87 (124)
T d1dcea3 16 LEQLLLVTHLDLSHN-RLRALPPA-L---AALRCLEVLQASD-NALENVDG-VANLPRLQELLLCN-NRLQQSAAIQPLV 87 (124)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGG-G---GGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGGGG
T ss_pred cccCCCCCEEECCCC-ccCcchhh-h---hhhhccccccccc-ccccccCc-cccccccCeEECCC-CccCCCCCchhhc
Confidence 345567777777776 56666543 3 5677777777777 56666653 56677777777766 5666665433445
Q ss_pred ccCCcceEEEcccc
Q 012933 395 SLVNLGRMMIADCK 408 (453)
Q Consensus 395 ~l~~L~~L~i~~C~ 408 (453)
.+++|+++++++-+
T Consensus 88 ~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 88 SCPRLVLLNLQGNS 101 (124)
T ss_dssp GCTTCCEEECTTSG
T ss_pred CCCCCCEEECCCCc
Confidence 66777777776654
No 27
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.53 E-value=2.4e-07 Score=78.52 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=35.2
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
.+++|+.|+++++ .+..++.+.+ ..+++|++|++++ ++++.++.. +.++++|++|++++ ++++.++.. .+..
T Consensus 52 ~l~~L~~L~L~~N-~i~~~~~~~~---~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~-~f~~ 124 (192)
T d1w8aa_ 52 RLPHLVKLELKRN-QLTGIEPNAF---EGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPG-SFEH 124 (192)
T ss_dssp GCTTCCEEECCSS-CCCCBCTTTT---TTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTT-SSTT
T ss_pred CCceEeeeecccc-cccccccccc---ccccccceeeecc-ccccccCHHHHhCCCcccccccCC-ccccccCHH-HhcC
Confidence 3444444444444 3333433333 3444444444444 344444332 33444444444443 344444332 2233
Q ss_pred cCCcceEEEc
Q 012933 396 LVNLGRMMIA 405 (453)
Q Consensus 396 l~~L~~L~i~ 405 (453)
+++|+++++.
T Consensus 125 l~~L~~l~L~ 134 (192)
T d1w8aa_ 125 LNSLTSLNLA 134 (192)
T ss_dssp CTTCCEEECT
T ss_pred Cccccccccc
Confidence 4444444443
No 28
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.48 E-value=8.1e-08 Score=75.17 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=79.5
Q ss_pred CEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccCcccccccCCCcccccCCcce
Q 012933 322 RWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKCHGLINLLTFSTSESLVNLGR 401 (453)
Q Consensus 322 ~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 401 (453)
+.|+++++ +++.++. + ..+++|++|++++ +.++++|..+..+++|++|++++ +.+++++. ...+++|++
T Consensus 1 R~L~Ls~n-~l~~l~~--l---~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~---~~~l~~L~~ 69 (124)
T d1dcea3 1 RVLHLAHK-DLTVLCH--L---EQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVDG---VANLPRLQE 69 (124)
T ss_dssp SEEECTTS-CCSSCCC--G---GGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG---GTTCSSCCE
T ss_pred CEEEcCCC-CCCCCcc--c---ccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccCc---cccccccCe
Confidence 56888888 6776652 3 7899999999998 78999998888999999999988 78988853 567899999
Q ss_pred EEEcccchhHHHHhhccCCccCCCceeccccchhhhhhH
Q 012933 402 MMIADCKMIEQIIQLQVGEEAKDCNVFKELSCETMSKNE 440 (453)
Q Consensus 402 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 440 (453)
++++++.-- + .........++.|++++++++|
T Consensus 70 L~l~~N~i~-~------~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 70 LLLCNNRLQ-Q------SAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp EECCSSCCC-S------SSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCccC-C------CCCchhhcCCCCCCEEECCCCc
Confidence 999887521 1 1122345678899999988876
No 29
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.37 E-value=2.4e-08 Score=96.34 Aligned_cols=365 Identities=13% Similarity=0.082 Sum_probs=168.5
Q ss_pred CcccccceEEeccccchhhhh-cccccccccccccccccceeeccccccccccccc----cccccCCCcceEeecCCCCc
Q 012933 24 GIPSSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE----NYTLEFPSLERVSMTHCPNM 98 (453)
Q Consensus 24 ~~~~~L~~L~L~~c~~l~~i~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~l~~L~~L~l~~c~~l 98 (453)
..+++++.|+|++|. ++... ..+. .....+++|++|+++++ .++..... ......++|++|++++|. +
T Consensus 24 ~~l~~l~~L~L~~~~-i~~~~~~~l~----~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i 96 (460)
T d1z7xw1 24 PLLQQCQVVRLDDCG-LTEARCKDIS----SALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-L 96 (460)
T ss_dssp HHHTTCSEEEEESSC-CCHHHHHHHH----HHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-C
T ss_pred HhCCCCCEEEeCCCC-CCHHHHHHHH----HHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-c
Confidence 457899999999983 54211 1111 12234889999999984 34322111 111123579999999985 5
Q ss_pred cc-----cccCccCCCCcceEEecccccccc------------------ccccCCcc-chhHHHHHHhhcCCCCccEEEE
Q 012933 99 KT-----FSHGILSTPKLHKVQVTEKEEGEL------------------HHWEGNKL-NSTIQKCYEEMIGFRDMEYLQL 154 (453)
Q Consensus 99 ~~-----~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l 154 (453)
+. ++..+...++|++|+++++.--.. ........ ......+...+.....++.+.+
T Consensus 97 t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 176 (460)
T d1z7xw1 97 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176 (460)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccc
Confidence 53 445566789999999987531000 00000000 0011122223333455566665
Q ss_pred eeCCCCccc--ccCCCCCcCccCCCcEEEecCCCCccccC--chhHHhhcCCCcEEEeccCccchhhhcccccccccCCC
Q 012933 155 SYFPHLKEI--WHGQALPVSFFNNLARLVVDDCTNMSSAI--PANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHR 230 (453)
Q Consensus 155 ~~~~~l~~~--~~~~~l~~~~l~~L~~L~l~~c~~l~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 230 (453)
+++...... .....+. ........+.+.++....... ....+...+.++.+.+.++........ .. .....
T Consensus 177 s~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~-~~---~~~~~ 251 (460)
T d1z7xw1 177 SNNDINEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA-EL---CPGLL 251 (460)
T ss_dssp CSSBCHHHHHHHHHHHHH-HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH-HH---HHHHT
T ss_pred cccccccccccccccccc-cccccccccccccccccchhhhcccccccccccccccchhhccccccccc-hh---hcccc
Confidence 554311100 0000000 012245556666553221110 112345567777777776533221100 00 00011
Q ss_pred CCCCCccceeeeccCCCcceec-cCCCcccCCCCccEEeeecCCCCceeccCC---cccccCCCcccccccccccccccc
Q 012933 231 GPLFPKLYGLRLIDLPKLKRFC-NFTGNIIELPELQHLTIQNCPDMETFISNS---VVHVTTDNKEPQKLTSEENFLLAH 306 (453)
Q Consensus 231 ~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~ 306 (453)
. ..+.++.+++.++.--.... .....+...+.++.++++++. +.+..... ........|+.+.++++.--.
T Consensus 252 ~-~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~--- 326 (460)
T d1z7xw1 252 H-PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTA--- 326 (460)
T ss_dssp S-TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG---
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccc-ccccccchhhccccccccccccccccccchhh---
Confidence 1 22567778777664221110 011234456777777776643 22111000 001122356677766652111
Q ss_pred ccccccc-ccccCCCcCEEeecCCCCcceecccCCc-c-cccCCCccceeeccCCCccc-----cCCCCCCCCCCCEEec
Q 012933 307 QVQPLFD-EKVSFPRLRWLELSGLHKVQHLWKENDE-S-NKAFANLESLEISECSKLQK-----LVPPSWHLENLEALEV 378 (453)
Q Consensus 307 ~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~-~-~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l 378 (453)
.-...+. .....++|++|+++++ .+++.....+. . ....+.|++|++++| .+++ ++..+...++|++|++
T Consensus 327 ~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L 404 (460)
T d1z7xw1 327 ACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL 404 (460)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred hhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEEC
Confidence 0000000 0123457888888776 34432111100 0 024566788888876 3543 3333445677888888
Q ss_pred ccCcccccccCCCc----ccccCCcceEEEcccc
Q 012933 379 SKCHGLINLLTFST----SESLVNLGRMMIADCK 408 (453)
Q Consensus 379 ~~c~~l~~l~~~~~----~~~l~~L~~L~i~~C~ 408 (453)
++ +.+++-....+ ......|++|++.++.
T Consensus 405 s~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 405 SN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp CS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CC-CcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 66 45544211111 1122467777777665
No 30
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.24 E-value=2.5e-06 Score=69.28 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=45.7
Q ss_pred cCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCCC-CCCCCCCCEEecccCcccccccCCCcccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVPP-SWHLENLEALEVSKCHGLINLLTFSTSES 395 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 395 (453)
.+++|++|++.++..++.++...| .++++|+.|++++ ++++.++.. +..+++|++|++++ ++++.++.. .+..
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f---~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~~ 102 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDL---RGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK-TVQG 102 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGS---CSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST-TTCS
T ss_pred CccccCeeecCCCccccccCchhh---ccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccChh-hhcc
Confidence 345566666655545666665555 5566666666666 455655443 45566666666655 556655543 2222
Q ss_pred cCCcceEEEc
Q 012933 396 LVNLGRMMIA 405 (453)
Q Consensus 396 l~~L~~L~i~ 405 (453)
.+|++|+++
T Consensus 103 -~~l~~L~L~ 111 (156)
T d2ifga3 103 -LSLQELVLS 111 (156)
T ss_dssp -CCCCEEECC
T ss_pred -ccccccccC
Confidence 346666665
No 31
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=98.24 E-value=3.2e-09 Score=90.87 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred Cccceeeecc-CCCcceeccCCCcccCCCCccEEeeecCCCCceeccCCcccccCCCccccccccccccccccccccccc
Q 012933 235 PKLYGLRLID-LPKLKRFCNFTGNIIELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFD 313 (453)
Q Consensus 235 ~~L~~L~L~~-~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 313 (453)
..++.+.+.+ .+.++.+ +..+..+++|++|+++++. ++.++ + +..+++|+.|+++++. +. .++
T Consensus 23 ~~~~~~~l~~~~~~i~~l---~~sl~~L~~L~~L~Ls~n~-I~~i~--~--l~~l~~L~~L~Ls~N~-i~-------~i~ 86 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEKM---DATLSTLKACKHLALSTNN-IEKIS--S--LSGMENLRILSLGRNL-IK-------KIE 86 (198)
T ss_dssp TTCSCEECCBCCTTCCCC---HHHHHHTTTCCEEECSEEE-ESCCC--C--HHHHTTCCEEECCEEE-EC-------SCS
T ss_pred cccceeeeecccCchhhh---hhHHhcccccceeECcccC-CCCcc--c--ccCCccccChhhcccc-cc-------ccc
Confidence 3455555543 2334433 2456778888888887643 44332 1 4455566666666542 11 001
Q ss_pred c-cccCCCcCEEeecCCCCcceecccCCcccccCCCccceeeccCCCccccCC--CCCCCCCCCEEeccc
Q 012933 314 E-KVSFPRLRWLELSGLHKVQHLWKENDESNKAFANLESLEISECSKLQKLVP--PSWHLENLEALEVSK 380 (453)
Q Consensus 314 ~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~ 380 (453)
. ...+++|+.|+++++ .+++++. + ..+++|+.|++++ +.+++++. .+..+++|++|++++
T Consensus 87 ~~~~~~~~L~~L~l~~N-~i~~l~~--~---~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~ 149 (198)
T d1m9la_ 87 NLDAVADTLEELWISYN-QIASLSG--I---EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp SHHHHHHHCCEEECSEE-ECCCHHH--H---HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ccccccccccccccccc-ccccccc--c---ccccccccccccc-chhccccccccccCCCccceeecCC
Confidence 1 112345666666555 3444321 1 4555566666655 33444432 234555555555555
No 32
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.19 E-value=3.8e-06 Score=68.17 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=80.4
Q ss_pred CCCCccEEeeecCCCCceeccCCcccccCCCcccccccccccccccccccccccccccCCCcCEEeecCCCCcceecccC
Q 012933 260 ELPELQHLTIQNCPDMETFISNSVVHVTTDNKEPQKLTSEENFLLAHQVQPLFDEKVSFPRLRWLELSGLHKVQHLWKEN 339 (453)
Q Consensus 260 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 339 (453)
.+...+.++..+ ..+.+.+.. +..+++|++|++.+...++.. ..+.+..+++|+.|+++++ +++.++.+.
T Consensus 6 ~c~~~~~l~c~~-~~~~~~p~~---l~~l~~l~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~ 75 (156)
T d2ifga3 6 CPHGSSGLRCTR-DGALDSLHH---LPGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVKS-GLRFVAPDA 75 (156)
T ss_dssp CCSSSSCEECCS-SCCCTTTTT---SCSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCSS-CCCEECTTG
T ss_pred CcCCCCeEEecC-CCCccCccc---ccCccccCeeecCCCcccccc-----CchhhccccccCcceeecc-ccCCccccc
Confidence 344455566655 333444443 566779999999876545411 1123557899999999999 799999888
Q ss_pred CcccccCCCccceeeccCCCccccCCCCCCCCCCCEEecccC
Q 012933 340 DESNKAFANLESLEISECSKLQKLVPPSWHLENLEALEVSKC 381 (453)
Q Consensus 340 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 381 (453)
| ..+++|++|++++ ++++.+|.......+|++|++++.
T Consensus 76 f---~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 76 F---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp G---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred c---cccccccceeccC-CCCcccChhhhccccccccccCCC
Confidence 8 8999999999999 789999987666668999999873
No 33
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.12 E-value=1.3e-08 Score=98.32 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=73.0
Q ss_pred cccceEEeccccchhhhh-cccccccccccccccccceeeccccccccccccc---cccccCCCcceEeecCCCCccc--
Q 012933 27 SSLVNLNVSRCDKIEEII-RHVGEEAKENRIAFSKLKVLILDYLPTLTSFCLE---NYTLEFPSLERVSMTHCPNMKT-- 100 (453)
Q Consensus 27 ~~L~~L~L~~c~~l~~i~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~-- 100 (453)
++|+.|++++. ++.... .. ..+.++++++|++.+|. ++..... .....+++|++|+++++. +++
T Consensus 2 ~~l~~ld~~~~-~i~~~~~~~-------l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~ 71 (460)
T d1z7xw1 2 LDIQSLDIQCE-ELSDARWAE-------LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVG 71 (460)
T ss_dssp EEEEEEEEESC-CCCHHHHHH-------HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred CCCCEEEeeCC-cCChHHHHH-------HHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHH
Confidence 46899999764 665421 11 23348899999999974 4432211 224578999999999874 542
Q ss_pred ---cccCccC-CCCcceEEeccccccccccccCCccchhHHHHHHhhcCCCCccEEEEeeCC
Q 012933 101 ---FSHGILS-TPKLHKVQVTEKEEGELHHWEGNKLNSTIQKCYEEMIGFRDMEYLQLSYFP 158 (453)
Q Consensus 101 ---~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 158 (453)
+...... ..+|++|++++|. +. ......+...+..+++|++|+++++.
T Consensus 72 ~~~l~~~l~~~~~~L~~L~L~~n~-it---------~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 72 VHCVLQGLQTPSCKIQKLSLQNCC-LT---------GAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSC-CB---------GGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHhcCCCCCCEEECCCCC-cc---------ccccccccchhhcccccccccccccc
Confidence 2222222 4579999999763 11 12234556677888999999998875
No 34
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=98.09 E-value=6.7e-08 Score=82.42 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=29.9
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeecCCCCccccccCccCCCCcceEEecc
Q 012933 58 FSKLKVLILDYLPTLTSFCLENYTLEFPSLERVSMTHCPNMKTFSHGILSTPKLHKVQVTE 118 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 118 (453)
+++|++|++++ .+++.+. ....+++|++|++++| .++.++......++|+.|++++
T Consensus 47 L~~L~~L~Ls~-n~I~~i~---~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~ 102 (198)
T d1m9la_ 47 LKACKHLALST-NNIEKIS---SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TTTCCEEECSE-EEESCCC---CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE
T ss_pred ccccceeECcc-cCCCCcc---cccCCccccChhhccc-cccccccccccccccccccccc
Confidence 66666776665 3344442 1445666677776665 3555443223334455555553
No 35
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=97.78 E-value=8e-06 Score=75.47 Aligned_cols=257 Identities=14% Similarity=0.062 Sum_probs=135.4
Q ss_pred ccCcccccceEEeccccchhhh-hcccccccccccccccccceeecccccc--cccc-cc-----ccccccCCCcceEee
Q 012933 22 QVGIPSSLVNLNVSRCDKIEEI-IRHVGEEAKENRIAFSKLKVLILDYLPT--LTSF-CL-----ENYTLEFPSLERVSM 92 (453)
Q Consensus 22 ~~~~~~~L~~L~L~~c~~l~~i-~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~~-~~-----~~~~~~l~~L~~L~l 92 (453)
++....+|+.|+|+++ .+..- ...+.. .....++|+.++++++.. .... +. ......+++|+.|++
T Consensus 26 ~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~----~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGN-TIGTEAARWLSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp HHHHCSCCCEEECTTS-EECHHHHHHHHH----TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhhCCCCCEEECcCC-cCCHHHHHHHHH----HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 3455788999999986 44321 111111 233478899999987531 1110 00 122445789999999
Q ss_pred cCCCCcc-----ccccCccCCCCcceEEeccccccccccccCC-ccchhHH--HHHHhhcCCCCccEEEEeeCCCCcccc
Q 012933 93 THCPNMK-----TFSHGILSTPKLHKVQVTEKEEGELHHWEGN-KLNSTIQ--KCYEEMIGFRDMEYLQLSYFPHLKEIW 164 (453)
Q Consensus 93 ~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~ 164 (453)
++|. ++ .+...+...++|++|+++.|.- . ..+. .+..... .........+.|+.+.++++. +....
T Consensus 101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~---~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~ 174 (344)
T d2ca6a1 101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGS 174 (344)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCC-H---HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGG
T ss_pred cccc-cccccccchhhhhcccccchheecccccc-c---ccccccccccccccccccccccCcccceeeccccc-ccccc
Confidence 9874 33 2333444678899999987531 0 0000 0000000 011122456788888887765 32211
Q ss_pred cCCCC--CcCccCCCcEEEecCCCCcccc----CchhHHhhcCCCcEEEeccCccchhhhcccccccccCCCCCCCCccc
Q 012933 165 HGQAL--PVSFFNNLARLVVDDCTNMSSA----IPANLLRCLNNLQWLEVRNCDSIEEVLHLEEQNADKEHRGPLFPKLY 238 (453)
Q Consensus 165 ~~~~l--~~~~l~~L~~L~l~~c~~l~~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 238 (453)
... + .....+.|++|++++|. +... .....+...++|+.|+++++. +.+... ..+....... ++|+
T Consensus 175 ~~~-l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~----~~L~~~l~~~-~~L~ 246 (344)
T d2ca6a1 175 MKE-WAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS----SALAIALKSW-PNLR 246 (344)
T ss_dssp HHH-HHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH----HHHHHHGGGC-TTCC
T ss_pred ccc-ccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-cccccc----cccccccccc-ccch
Confidence 100 1 01346789999998875 3211 011235677889999998764 332211 1111111123 7899
Q ss_pred eeeeccCCCcceec--cCCCcc--cCCCCccEEeeecCCCCceeccCC---cccccCCCccccccccc
Q 012933 239 GLRLIDLPKLKRFC--NFTGNI--IELPELQHLTIQNCPDMETFISNS---VVHVTTDNKEPQKLTSE 299 (453)
Q Consensus 239 ~L~L~~~~~l~~~~--~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~l~~L~~L~l~~~ 299 (453)
+|++.+|. +++.. .....+ ...++|++|+++++. ++.-.... .+....++|+.|+++++
T Consensus 247 ~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 247 ELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp EEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 99998875 33210 000112 234679999998864 43311110 11124568999998875
No 36
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=97.71 E-value=1.8e-06 Score=80.08 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=32.0
Q ss_pred cCCCcCEEeecCCCCcceecccCCc-cc--ccCCCccceeeccCCCccc-----cCCCC-CCCCCCCEEeccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWKENDE-SN--KAFANLESLEISECSKLQK-----LVPPS-WHLENLEALEVSK 380 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~~~~~-~~--~~l~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~l~~ 380 (453)
..++|++|++++| .+++.....+. .. ...+.|++|+++++ .++. +...+ .+.++|++|++++
T Consensus 241 ~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 241 SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC
Confidence 4567777777777 34332111100 00 12356777777774 3432 22222 2457788888866
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.50 E-value=0.0011 Score=53.39 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=36.6
Q ss_pred cCCCcCEEeecCCCCcceecc--cCCcccccCCCccceeeccCCCccccCC-CCCCCCCCCEEeccc
Q 012933 317 SFPRLRWLELSGLHKVQHLWK--ENDESNKAFANLESLEISECSKLQKLVP-PSWHLENLEALEVSK 380 (453)
Q Consensus 317 ~l~~L~~L~l~~~~~l~~l~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 380 (453)
.+|+|++|+++++ +++++.. ..+ ..+++|+.|++++ +.+++++. ......+|++|++.+
T Consensus 63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~---~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~ 124 (162)
T d1koha1 63 NIPELLSLNLSNN-RLYRLDDMSSIV---QKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDG 124 (162)
T ss_dssp HCTTCCCCCCCSS-CCCCCSGGGTHH---HHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred hCCCCCEeeCCCc-cccCCchhHHHH---hhCCccccccccc-CccccchhhhhhhccccceeecCC
Confidence 4577777777777 5665532 112 5677777777777 56666654 122334677777766
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.90 E-value=0.0034 Score=50.36 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=52.5
Q ss_pred ccccceeecccccccccccc-ccccccCCCcceEeecCCCCcccccc-CccCCCCcceEEeccccccccccccCCccchh
Q 012933 58 FSKLKVLILDYLPTLTSFCL-ENYTLEFPSLERVSMTHCPNMKTFSH-GILSTPKLHKVQVTEKEEGELHHWEGNKLNST 135 (453)
Q Consensus 58 ~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 135 (453)
+++|++|++++ ++++.+.. ......+++|+.|+++++ +++.++. ......+|+.+++.+++-... ....
T Consensus 64 ~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~-------~~~~ 134 (162)
T d1koha1 64 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDT-------FRDQ 134 (162)
T ss_dssp CTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSS-------SSSH
T ss_pred CCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcC-------cccc
Confidence 78899999998 44655532 222456899999999886 4665543 223445677777776432100 0001
Q ss_pred HHHHHHhhcCCCCccEEEEee
Q 012933 136 IQKCYEEMIGFRDMEYLQLSY 156 (453)
Q Consensus 136 ~~~~~~~~~~~~~L~~L~l~~ 156 (453)
..-.......+|+|+.|+=..
T Consensus 135 ~~y~~~i~~~~P~L~~LDg~~ 155 (162)
T d1koha1 135 STYISAIRERFPKLLRLDGHE 155 (162)
T ss_dssp HHHHHHHHTTSTTCCEETTEE
T ss_pred hhHHHHHHHHCCCCCEECcCC
Confidence 111223455678999886433
No 39
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=91.83 E-value=0.097 Score=41.40 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=10.0
Q ss_pred HHHHhhcCCCCccEEEEee
Q 012933 138 KCYEEMIGFRDMEYLQLSY 156 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~ 156 (453)
.+...+...++|+.++|..
T Consensus 93 ~l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDN 111 (166)
T ss_dssp HHHHGGGGCSSCCEEECCC
T ss_pred HHHHHHHhCccccEEeecc
Confidence 3444555556666655543
No 40
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=91.67 E-value=0.11 Score=41.11 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=38.4
Q ss_pred HHHHhhcCCCCccEEEEeeCCCCcccccCCCCCcCccCCCcEEEecCCC-CccccC---chhHHhhcCCCcEEEecc
Q 012933 138 KCYEEMIGFRDMEYLQLSYFPHLKEIWHGQALPVSFFNNLARLVVDDCT-NMSSAI---PANLLRCLNNLQWLEVRN 210 (453)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~-~l~~~~---~~~~l~~l~~L~~L~l~~ 210 (453)
.+...+...+.++.+++.++.--.+......-.....++|+++++..+. .+.+.. -..++...++|+.|++..
T Consensus 65 ~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 65 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 3444445567788888877762221110000011336788888887654 232210 122355777888888755
No 41
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=90.93 E-value=0.077 Score=42.17 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=6.5
Q ss_pred ccccceeecccc
Q 012933 58 FSKLKVLILDYL 69 (453)
Q Consensus 58 ~~~L~~L~l~~~ 69 (453)
.++|++|+++++
T Consensus 14 ~~~L~~L~L~~~ 25 (167)
T d1pgva_ 14 DTDLKEVNINNM 25 (167)
T ss_dssp CSSCCEEECTTC
T ss_pred CCCCcEEEeCCC
Confidence 455556665543
No 42
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=88.70 E-value=0.15 Score=40.41 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=9.2
Q ss_pred ccccceEEeccccch
Q 012933 26 PSSLVNLNVSRCDKI 40 (453)
Q Consensus 26 ~~~L~~L~L~~c~~l 40 (453)
.++|+.|+|+++..+
T Consensus 14 ~~~L~~L~L~~~~~i 28 (167)
T d1pgva_ 14 DTDLKEVNINNMKRV 28 (167)
T ss_dssp CSSCCEEECTTCCSS
T ss_pred CCCCcEEEeCCCCCC
Confidence 466777777665433
Done!