BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012934
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/453 (92%), Positives = 435/453 (96%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
+ETGA+AREVRRI RAVRLTMALR+KLKA LSAFLN+ L PGSE HSRL S+LPKEDE
Sbjct: 36 IETGAYAREVRRISRAVRLTMALRKKLKASSLSAFLNYVLVPGSEVHSRLSSFLPKEDEQ 95
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
+MEVDTA+SGA AP K+PLPELEIYCYLLVLIFLID+K+YNEAKACSSASIARLK +NRR
Sbjct: 96 DMEVDTATSGAQAPIKNPLPELEIYCYLLVLIFLIDQKKYNEAKACSSASIARLKTVNRR 155
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
TVDVLA+RLYFYYSLCYELTGDLAEIRG LLALHRIATLRHDELGQETLLNLLLRNYLHY
Sbjct: 156 TVDVLASRLYFYYSLCYELTGDLAEIRGYLLALHRIATLRHDELGQETLLNLLLRNYLHY 215
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 240
NLYDQAEKLRSKAPRFEAHSNQQF RYLFYLGKIRTIQLEYTDAKESLLQAARKAP AAL
Sbjct: 216 NLYDQAEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAAL 275
Query: 241 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKF 300
GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF+ VAEKF
Sbjct: 276 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRKVAEKF 335
Query: 301 SSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVS 360
SSTFSSD TNNLIVRLRHNVIRTGLRNISISYSRISL DVAKKLRLDS NPVADAESIVS
Sbjct: 336 SSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVS 395
Query: 361 KAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPN 420
KAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ+AFNSRIAFCLNMHNEAVRALRFPPN
Sbjct: 396 KAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPN 455
Query: 421 SHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
SHKEKESAEKRRERQQQEQELAKHIAEEDDD+F
Sbjct: 456 SHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/453 (89%), Positives = 433/453 (95%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
+E+GA+AREVRRI+RAVRLT+ALR+KL A V++AFLNF+L PGSE H+RL SYLPKEDEH
Sbjct: 37 IESGAYAREVRRILRAVRLTIALRKKLNASVVNAFLNFSLVPGSEVHARLASYLPKEDEH 96
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
+MEVDTA S AKH LPELEIYCYLLVLIFLID+K+Y+EAKACSSASIAR+KN+NRR
Sbjct: 97 DMEVDTAMSATTTLAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRR 156
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
TV+VLA+RLYFYYSL YELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY
Sbjct: 157 TVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 216
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 240
NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES LQAARKAPVAAL
Sbjct: 217 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAAL 276
Query: 241 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKF 300
GFRVQCNKWA+IVRLLLGEIPERTVFMQKGMEKALRPYF LTNAVRIGDLELF+ VA+KF
Sbjct: 277 GFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDLELFRXVADKF 336
Query: 301 SSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVS 360
+STF++DRT+NLIVRLRHNVIRTGLRNISISYSRISL DVA+KLRLDS NPVADAESIVS
Sbjct: 337 ASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVS 396
Query: 361 KAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPN 420
KAIRDGAIDAT+DHANGWMVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFP N
Sbjct: 397 KAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALRFPAN 456
Query: 421 SHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
SHK+KESAEKRRERQQQEQELAKHIAEEDDDEF
Sbjct: 457 SHKDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/454 (84%), Positives = 421/454 (92%), Gaps = 1/454 (0%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
++TG++ +EVRRI RAVRLT+ LR+KL VLS+FL+FAL PGSEAHSRL S++PK DEH
Sbjct: 35 IDTGSYTKEVRRIARAVRLTIGLRQKLTGSVLSSFLDFALVPGSEAHSRLSSFVPKGDEH 94
Query: 61 EMEVDTASSGA-PAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNR 119
+MEVDTASS AP+KH ELEIYCY +VL+FLID+K+YNEAKACSSASIARLKN+NR
Sbjct: 95 DMEVDTASSATQAAPSKHLPAELEIYCYFIVLLFLIDQKKYNEAKACSSASIARLKNVNR 154
Query: 120 RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLH 179
RT+DV+A+RLYFYYSL YE TGDLAEIRG LLALH ATLRHDELGQETLLNLLLRNYLH
Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTLLALHHSATLRHDELGQETLLNLLLRNYLH 214
Query: 180 YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239
YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP+AA
Sbjct: 215 YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAA 274
Query: 240 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEK 299
LGFR+QCNKWAI+VRLLLGEIPER++F QKGMEKALRPYFELTNAVRIGDLELF++V EK
Sbjct: 275 LGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEK 334
Query: 300 FSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIV 359
F TF+ DRT+NLIVRLRHNVIRTGLRNISISYSRISL DVAKKLRL+S NPVADAESIV
Sbjct: 335 FLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIV 394
Query: 360 SKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPP 419
+KAIRDGAIDAT+DH NG MVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPP
Sbjct: 395 AKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPP 454
Query: 420 NSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
N+HKEKES EKRRER+QQE+ELAKH+AEEDDD+F
Sbjct: 455 NTHKEKESDEKRRERKQQEEELAKHMAEEDDDDF 488
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/453 (82%), Positives = 417/453 (92%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
++TG++ +EVRRI RAVRLT+ LRRKL V+S+FL+FAL PGSEAH+RL S++PK DEH
Sbjct: 35 IDTGSYTKEVRRIARAVRLTVGLRRKLTGSVISSFLDFALVPGSEAHTRLSSFVPKSDEH 94
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
+MEVDTASS + AP KH ELEIYCY +VL+FLID+K+YNEAK CS+ASIARLK++NRR
Sbjct: 95 DMEVDTASSNSQAPPKHLPAELEIYCYFIVLLFLIDQKKYNEAKVCSTASIARLKSVNRR 154
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
TVDV+A++LYFYYSL YELT DLAEIR LLALH ATLRHDELGQETLLNLLLRNYLHY
Sbjct: 155 TVDVIASKLYFYYSLSYELTNDLAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHY 214
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 240
NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA+L
Sbjct: 215 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASL 274
Query: 241 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKF 300
GFR+QCNKWAIIVRLLLGEIPER++F QKGMEK LRPYFELTNAVRIGDLELF + EKF
Sbjct: 275 GFRIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKF 334
Query: 301 SSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVS 360
+ TF+ DRT+NLIVRLRHNVIRTGLRNISISYSRISL DVA+KLRL+SANPVADAESIV+
Sbjct: 335 AKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVA 394
Query: 361 KAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPN 420
KAIRDGAIDAT+DH NG MVSKETGDIYSTNEPQ AFNSRIAFCLNMHNEAVRALRFPPN
Sbjct: 395 KAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPN 454
Query: 421 SHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
+H+EKES EKRRE +QQE+ELAK++AEEDDD+F
Sbjct: 455 THREKESEEKRREMKQQEEELAKYMAEEDDDDF 487
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 223/457 (48%), Positives = 303/457 (66%), Gaps = 11/457 (2%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFA--LAPGSEAHSRLLSYLPKED 58
+E G ++E R I+R +R RRKL V F N A + P ++ +P +
Sbjct: 45 IEKGVASKESRFILRVLRNLPNTRRKLNGVV---FRNLAQSIYPAGADREAAVALMPAVE 101
Query: 59 EHEMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMN 118
+ E+ A K P+ E++ Y YLL+L+ LID A + A +A++ N
Sbjct: 102 KDATELPDVPKKQVA-TKAPIAEVDAYFYLLLLVKLIDASDLKRAGISADALMAKISIQN 160
Query: 119 RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYL 178
RRT+D++ A+ YFY+S EL L IR L A R ATLR+D GQ L+N LLRNYL
Sbjct: 161 RRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTATLRNDFEGQAVLINCLLRNYL 220
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV- 237
HY LYDQA+KL K+ E+ SN ++ R+L+YLG+I+ +LEY+DA + L+QA RK+P
Sbjct: 221 HYALYDQADKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEYSDAHKHLVQALRKSPQH 280
Query: 238 AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVA 297
AA+GFR K I+V LLLG IPER VF Q G+ ++L YF+LT AVR+G+L+ F V
Sbjct: 281 AAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVV 340
Query: 298 EKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAES 357
++ F D T LI+RLRHNVI+T +R+I +SYSRIS D+AK+L LDSA DAE
Sbjct: 341 SQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAE---DAEF 397
Query: 358 IVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRF 417
IVSKAIRDG I+AT+D A +M SKE+ DIYST EPQLAF+ RI+FCLN+HN++V+A+R+
Sbjct: 398 IVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQSVKAMRY 457
Query: 418 PPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
PP S+ K+ ESAE+RRER+QQ+ ELAK +AE+D+D F
Sbjct: 458 PPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/455 (48%), Positives = 308/455 (67%), Gaps = 5/455 (1%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
+E +E R ++RA+R+ + R+L VL + + LL +L + +
Sbjct: 82 LEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDFLLPFLEEPMDT 141
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
E ++ A + LPE+E Y LLV+IF+++ KRY EA+ S + ++ NRR
Sbjct: 142 EADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQNRR 201
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
+D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TLLNLLLRNYLHY
Sbjct: 202 ALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHY 261
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AA 239
+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++ A RKAP A
Sbjct: 262 SLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTA 321
Query: 240 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEK 299
+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G+L F V ++
Sbjct: 322 VGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQ 381
Query: 300 FSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIV 359
F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS DAE IV
Sbjct: 382 FGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE---DAEFIV 438
Query: 360 SKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPP 419
+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++HN +V+A+RFPP
Sbjct: 439 AKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPP 498
Query: 420 NSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 499 KSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/455 (48%), Positives = 309/455 (67%), Gaps = 5/455 (1%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
+E +E R ++RA+R+ + R+L VL ++ + LL +L + +
Sbjct: 78 LEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNNATRDFLLPFLEEPMDT 137
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
E ++ A + LPE+E Y LL++IFL++ KRY EA+ S + ++ NRR
Sbjct: 138 EADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKRYKEAQKISDDLMQKISTQNRR 197
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
+D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TLLNLLLRNYLHY
Sbjct: 198 ALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHY 257
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AA 239
+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++ A RKAP A
Sbjct: 258 SLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTA 317
Query: 240 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEK 299
+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G+L F V ++
Sbjct: 318 VGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQ 377
Query: 300 FSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIV 359
F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS DAE IV
Sbjct: 378 FGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE---DAEFIV 434
Query: 360 SKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPP 419
+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++HN +V+A+RFPP
Sbjct: 435 AKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPP 494
Query: 420 NSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 495 KSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 529
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/455 (48%), Positives = 309/455 (67%), Gaps = 5/455 (1%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEH 60
+E +E R ++RA+R+ + R+L VL ++ + LL +L + +
Sbjct: 82 LEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNNATRDFLLPFLEEPMDT 141
Query: 61 EMEVDTASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR 120
E ++ A + LPE+E Y LL++IFL++ KRY EA+ S + ++ NRR
Sbjct: 142 EADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKRYKEAQKISDDLMQKISTQNRR 201
Query: 121 TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHY 180
+D++AA+ Y+Y++ YE L +R L A R ATLRHD GQ TLLNLLLRNYLHY
Sbjct: 202 ALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDTDGQATLLNLLLRNYLHY 261
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AA 239
+LYDQAEKL SK+ E +N ++ RYL+Y G+I+ IQLEY++A+ ++ A RKAP A
Sbjct: 262 SLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTA 321
Query: 240 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEK 299
+GF+ +K I+V LLLGEIP+R F Q ++++L PYF LT AVR G+L F V ++
Sbjct: 322 VGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQ 381
Query: 300 FSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIV 359
F F +D T LI+RLRHNVI+TG+R IS+SYSRISLAD+A+KL+LDS DAE IV
Sbjct: 382 FGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE---DAEFIV 438
Query: 360 SKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPP 419
+KAIRDG I+A+++H G++ SKE DIYST EPQLAF+ RI+FCL++HN +V+A+RFPP
Sbjct: 439 AKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPP 498
Query: 420 NSH-KEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
S+ K+ ESAE+RRER+QQ+ E AK +AE+DDD F
Sbjct: 499 KSYNKDLESAEERREREQQDLEFAKEMAEDDDDSF 533
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 223/449 (49%), Positives = 303/449 (67%), Gaps = 8/449 (1%)
Query: 7 AREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEMEVDT 66
++E R I+R +R RRKL A V+ L L P +++Y+ ED +
Sbjct: 54 SKEPRFILRVLRSLPTTRRKL-ALVVVRSLAVQLYPAGPERDGIMAYI--EDYPAGAQEP 110
Query: 67 ASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLA 126
A K P+PE++ Y +LL+L+ L+DK +A CS +A++ NRR++D++A
Sbjct: 111 ELPRPRAAIKSPVPEVDAYFHLLLLVRLLDKNDLPKATKCSQDLMAKVVGQNRRSLDLIA 170
Query: 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQA 186
A+ YFY+S EL DL IR L + R ATLR+D GQ L+N LLRNYLHY+LYDQA
Sbjct: 171 AKSYFYHSRVAELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQA 230
Query: 187 EKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP-VAALGFRVQ 245
+KL +K+ E SN + R+L+YLG+I+ +LEY+ A + L+QA RKAP AA+GFR
Sbjct: 231 DKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQT 290
Query: 246 CNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFS 305
K I+V LLLG+IPER VF Q + ++L PYF+LT AVR+G+L+ F V F F
Sbjct: 291 VQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQFR 350
Query: 306 SDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRD 365
D T LI+RLRHNVI+T +R+I ++YSRIS D+A+KL LDS DAE IV+KAIRD
Sbjct: 351 QDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE---DAEFIVAKAIRD 407
Query: 366 GAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH-KE 424
G I+AT+D G+M SKE+ DIYST EPQLAF+ RI+FCL++HN++V+A+R+PP S+ KE
Sbjct: 408 GVIEATLDPEKGYMRSKESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYGKE 467
Query: 425 KESAEKRRERQQQEQELAKHIAEEDDDEF 453
ESAE+RRER+QQ+ ELAK +AEEDDD F
Sbjct: 468 LESAEERREREQQDLELAKEMAEEDDDGF 496
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 225/451 (49%), Positives = 303/451 (67%), Gaps = 10/451 (2%)
Query: 7 AREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAP-GSEAHSRLLSYLPKEDEHEMEVD 65
++E R I+R +R RRKL A V+ L L P G E +Y+ ED +
Sbjct: 56 SKEPRFILRVLRSLPTTRRKL-ALVVVGSLAVQLYPAGPERDGNQWAYI--EDYPAGAQE 112
Query: 66 TASSGAPAPAKHPLP-ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDV 124
P K P E++ Y +LL+L+ L+DK +A CS +A++ NRR++D+
Sbjct: 113 PEGLHDPGSDKSPFAQEVDAYFHLLLLVRLLDKNDLPKATKCSQDLMAKIVGQNRRSLDL 172
Query: 125 LAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYD 184
+AA+ YFY+S EL DL IR L + R ATLR+D GQ L+N LLRNYLHY+LYD
Sbjct: 173 IAAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYD 232
Query: 185 QAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP-VAALGFR 243
QA+KL +K+ E SN + R+L+YLG+I+ +LEY+ A + L+QA RKAP AA+GFR
Sbjct: 233 QADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFR 292
Query: 244 VQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSST 303
K I+V LLLG+IPER VF Q + ++L PYF+LT AVR+G+L+ F V E F
Sbjct: 293 QTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLENFGEQ 352
Query: 304 FSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAI 363
F D T LI+RLRHNVI+T +R+I ++YSRIS D+A+KL LDS DAE IV+KAI
Sbjct: 353 FRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE---DAEFIVAKAI 409
Query: 364 RDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSH- 422
RDG IDAT+D G+M +KE+ DIYST EPQLAF+ RI+FCL++HN++V+A+R+PP S+
Sbjct: 410 RDGVIDATLDPEKGYMRTKESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRYPPKSYG 469
Query: 423 KEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
KE ESAE+RRER+QQ+ ELAK +AEEDDD+F
Sbjct: 470 KELESAEERREREQQDLELAKEMAEEDDDDF 500
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 299/464 (64%), Gaps = 14/464 (3%)
Query: 1 METGAHAREVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSR--LLSYLPKED 58
++ G +E+R I+ +R T ++R+KL VL+ +NFA + + A + LLS+L K D
Sbjct: 44 IDKGVDTKEMRFIISVLRQTQSIRKKLNYKVLNQIVNFAFSHQNHATKKNFLLSFL-KSD 102
Query: 59 EHEMEVDTAS-----SGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIAR 113
M++D+ + + + + H E+E Y +LLVLI+LID+K+Y +A CSSA +
Sbjct: 103 GSSMDIDSTTQAEKETTPSSSSSHLNIEVESYIHLLVLIYLIDQKKYEDATKCSSALMET 162
Query: 114 LKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 173
+++ R T+ L+++++FYYSL YE+T +L E+R LL+ R ATLRH++ GQ T++NLL
Sbjct: 163 VQSNTRITLYPLSSKIFFYYSLSYEMTNNLHEVRSTLLSALRTATLRHNDEGQATIINLL 222
Query: 174 LRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233
LRNYL YNL++QA+KL + E+ S+ QF RY +Y G+IR IQLEY ++ + L QA R
Sbjct: 223 LRNYLEYNLFEQADKLLANTQFPESASSNQFARYFYYQGRIRAIQLEYAESFKFLTQAIR 282
Query: 234 KAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLEL 292
KAP A GFR K IV+LL+GEIPER F QK ++ AL+PYF LT AVR+GDL
Sbjct: 283 KAPQNTAGGFRRTVYKLLSIVQLLMGEIPERNTFSQKQLKIALKPYFHLTEAVRVGDLGS 342
Query: 293 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPV 352
F E+ S F SD+T L+ RLR NVI+ GL+ ++ +YSRIS D+ KL+ D
Sbjct: 343 FNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRISFNDICTKLKFDGT--T 400
Query: 353 ADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAV 412
D I++K I+DG IDAT+++ G++ S+E D YST EP AF++RI CL +HN+++
Sbjct: 401 QDIMFIIAKTIKDGVIDATINYEGGYLQSRENIDAYSTQEPLHAFSNRIDICLKIHNDSL 460
Query: 413 RALRFPPNSHK---EKESAEKRRERQQQEQELAKHIAEEDDDEF 453
+A+RF P+ +K EK + + +++ E++ + E D +F
Sbjct: 461 KAMRFHPDLNKAETEKIAEVAKTIKEEMERQAEESSDNEGDSDF 504
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/450 (44%), Positives = 276/450 (61%), Gaps = 17/450 (3%)
Query: 8 REVRRIMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSY--LPKEDEHEMEVD 65
R+ R + R++R T + +L A VL + + + + LL +P+ + D
Sbjct: 54 RDPRLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDMPQNGD-----D 108
Query: 66 TASSGAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVL 125
+++S PE+++Y LL+ + L ++Y IARL++ +RRT+D +
Sbjct: 109 SSTSITNGNGNTIFPEVDMYLQLLLSMTLYYNEKYEVGAEYIKKVIARLQSYDRRTLDQI 168
Query: 126 AARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQ 185
AA+LYFYY L +E E R LL++HR A+LRHD Q +L LLLRNY+ +NLYDQ
Sbjct: 169 AAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLLRNYIQFNLYDQ 228
Query: 186 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFR 243
A++L SK SN RY +YLG+IR IQL+YT A E L+ A RKAP V A+ F
Sbjct: 229 ADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFL 288
Query: 244 VQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSST 303
K I+V+LL+GEIPER +F QK +EK L PY ++ AVRIGDL F K+ +
Sbjct: 289 EAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAE 348
Query: 304 FSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAI 363
F D LI RLRH VI+TGLR IS+SYSRISL DV KL LDS AE IV+K I
Sbjct: 349 FRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEES---AEYIVAKGI 405
Query: 364 RDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHK 423
RDG IDA++DH+N +M S E DIYST +PQ AF+ RI FCL +HN++++++R+P ++HK
Sbjct: 406 RDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDSIKSMRYPMDAHK 465
Query: 424 -EKESAEKRRERQQQEQELAKHIAEEDDDE 452
E E E+ R R ++E+A+ A+ DDDE
Sbjct: 466 SELEGVEEARRR--MDKEMAE--ADLDDDE 491
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 298 bits (764), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 184/454 (40%), Positives = 265/454 (58%), Gaps = 16/454 (3%)
Query: 13 IMRAVRLTMALRRKLKAPVLSAFLNFALAPGSEAHSRLLSYL---PKEDEHEMEVDTASS 69
I R +++ R+++ VL ++ L+ ++ +L YL P D +DT++
Sbjct: 54 ITRVLQVLPKTRKQINDNVLYKLVSSHLSSDAQFAEGMLKYLHYTPAADTEVQPMDTSNV 113
Query: 70 GAPAPAK--HPL---PELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDV 124
+P K P+ PE + Y LLVL+ L +K+ EA A + + N +RRT+D
Sbjct: 114 KTKSPKKGVKPVFASPESDCYLRLLVLLHLYAQKKNTEALALGENQLTSIYNFDRRTLDG 173
Query: 125 LAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYD 184
LAA+ ++ + YE G L + +G L + R ATLR+ Q L+ LLR YL Y
Sbjct: 174 LAAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLICWLLRCYLINRQYQ 233
Query: 185 QAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFR 243
A L SK + SN RY++Y G+I+ +QL+Y A LQA RKAP A+GF+
Sbjct: 234 SAAHLVSKVAFPDNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQAQRKAPQEGAIGFK 293
Query: 244 VQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSST 303
KW +++ LL GEIP+R+VF Q K L Y +L+ VR GD+ F E+F +
Sbjct: 294 QAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQ 353
Query: 304 FSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAI 363
F +D T LIVRLR NVI+T ++ IS++YSRI + D+AKKL + + + E IV+KAI
Sbjct: 354 FEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNET---ETEYIVAKAI 410
Query: 364 RDGAIDA--TVDHANG--WMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPP 419
DGAIDA T D +G +M S ET DIY T+EPQ F++RI +CL +HN+AV+ALR+PP
Sbjct: 411 ADGAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIRYCLELHNQAVKALRYPP 470
Query: 420 NSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF 453
E+ E+ RER+QQE E AK +A+EDDD+F
Sbjct: 471 KKKIAVETIEQAREREQQELEFAKELADEDDDDF 504
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 220/387 (56%), Gaps = 22/387 (5%)
Query: 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIA--RLKNMNRRTVDVLAARLYFYYSLCYE 138
E+ + +LLV +FL D K + + + L N R+++++ A+L+FY L +E
Sbjct: 133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHE 192
Query: 139 LTGDLAE----------IRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEK 188
+E +R ++ +IA+L+HD + L+NL+LR++L+ D A
Sbjct: 193 TLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASD 252
Query: 189 LRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFRV 244
SK P + S+ + RY FYL KI IQL+Y+ A E ++ A RKAP +LGF
Sbjct: 253 FISKLEYPHTDVSSSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311
Query: 245 QCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTF 304
Q NK ++LL+G+IPE + F Q M+K+L PY+ LT AV++GDL+ F S K+
Sbjct: 312 QSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLL 371
Query: 305 SSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIR 364
D T L VRLR NVI+TG+R IS++Y +ISL D+ KL LDS V E +VS+AIR
Sbjct: 372 LKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTV---EYMVSRAIR 428
Query: 365 DGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKE 424
DG I+A ++H +G++ + E +IY + +PQ F+ RI F +H+E + ++R+P + K+
Sbjct: 429 DGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPED--KK 486
Query: 425 KESAEKRRERQQQEQELAKHIAEEDDD 451
+ EK + + L + ++ D
Sbjct: 487 TQQNEKSENGENDDDTLDGDLMDDMSD 513
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 274 ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYS 333
+LR YF+L +AV+ D++ F+ E S + RL NVI+ G+R IS+ YS
Sbjct: 228 SLRIYFKLASAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYS 287
Query: 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEP 393
RIS D+A L ++S + E +V + IR G I V A+G YS E
Sbjct: 288 RISYEDIAHILGINS----GEVEYLVKRTIRKGLIKGKV--ADGIF--------YSLRED 333
Query: 394 QLAFNSRIAF--CLNMHNEAVRALRFP 418
+ + I C+ + N +R+P
Sbjct: 334 KSKTDIGIGIRDCIQLANYIQEHMRYP 360
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 124/285 (43%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q +LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 AYLDVDMMDICKENG----AYDAKPFLCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K + TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L A
Sbjct: 276 RNLVSKHNETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + ++ + Y N P + N
Sbjct: 333 EAEKYVLYMIEDGEIFASINQKDGMVCFHDSPEKY--NNPAMLHN 375
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q +LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGICVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 AYLDVDMMDICKENG----AYDAKPFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K + TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L A
Sbjct: 276 RNLVSKHNETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLYMIEDGEIFASINQKDGMVCFHDNPEKY--NNPAMLHN 375
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 204 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALG-FRVQCNKWAIIVRLL----LG 258
F Y +Y G I T Y A + P A+ ++ K ++V L+ +
Sbjct: 198 FLLYFYYGGMIYTAVKNYERAL-YFFEVCITTPAMAMSHIMLEAYKKFLMVSLIVEGKIA 256
Query: 259 EIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRH 318
IP+ T + + M+ Y +L N E + + K+S F+ D L ++
Sbjct: 257 YIPKNTQVIGRFMKPMANHYHDLVNVYANSSSEELRIIILKYSEAFTRDNNMGLAKQVAT 316
Query: 319 NVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGW 378
++ + ++ ++ ++ +SL+DVA +++L SA +AE + I+ G I A+++ +G
Sbjct: 317 SLYKRNIQRLTKTFLTLSLSDVASRVQLASA---VEAERYILNMIKSGEIYASINQKDGM 373
Query: 379 MVSKETGDIYSTNEPQLAFN 398
++ K+ + Y N P++ N
Sbjct: 374 VLFKDDPEKY--NSPEMFLN 391
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGISILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVCFHDNPEKY--NNPAMLHN 375
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVSKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PYLDVDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 120/285 (42%), Gaps = 27/285 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + L
Sbjct: 100 FAGLCHQLTNALVERKQPLRGIGVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAL 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
Y D + + A+ + F Y +Y G + T + A QA +A
Sbjct: 160 PYLDVDMVDICKENG----AYDAKHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L LLG++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+S+ K S F+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RSLVTKHSEIFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFN 398
+AE V I DG I A+++ +G + + + Y N P + N
Sbjct: 333 EAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKY--NNPAMLHN 375
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 120/282 (42%), Gaps = 27/282 (9%)
Query: 132 YYSLCYELTGDLAE----IRGNLLALHRIATLR---------HDELGQETLLNLLLRNYL 178
+ LC++LT L E +RG + I ++ H +L Q LL + +
Sbjct: 100 FAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAV 159
Query: 179 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238
+ D + + A+ + F Y +Y G I T + A QA +A
Sbjct: 160 PFLELDMMDICKENG----AYDAKHFLCYYYYGGMIYTGLKNFERALYFFEQAITTPAMA 215
Query: 239 ALGFRVQCNKWAIIVRLLL-GEIPERTVFMQKGMEKALRP----YFELTNAVRIGDLELF 293
++ K I+V L+L G++ + + + + + ++P Y EL +
Sbjct: 216 VSHIMLEAYKKYILVSLILHGKVQQLPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAEL 275
Query: 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353
+++ K S TF+ D L+ + ++ + ++ ++ ++ +SL D+A +++L
Sbjct: 276 RALVNKHSETFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQ--- 332
Query: 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQL 395
+AE V I DG I A+++ +G + + + Y N P +
Sbjct: 333 EAEKYVLHMIEDGEIYASINQKDGMVCFHDNPEKY--NNPAM 372
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 194 PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIV 253
P E++ Q Y F+ G++ +Y A+E LL A K P ++ NK I++
Sbjct: 232 PTLESYPLNQVITYRFFNGRLSVFNGQYKKAQEELLYAFNKCPNDSIK-----NKRLILL 286
Query: 254 RLLLGEIPERTVFMQKG-MEK-ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNN 311
L+ ++ E+ F +K +EK L + ++ +++ G+++ F + F S
Sbjct: 287 FLVPMQL-EQCKFPKKSLLEKFKLTQFIDIVQSIKSGNIKQFNECLSTHQNFFISKGIYL 345
Query: 312 LIVRLRHNVIRTGLRNISI--SYSRISLADVAKKLRL--DSANPVADAESIVSKAIRDGA 367
++ +L+ V R + + + + RI + + L+ + A + + E I+S I +G
Sbjct: 346 ILEKLKIIVYRNLFKKVHLITTGQRIPIGNFVSALKWMENDAIDIDETECILSNLIYNGY 405
Query: 368 IDATVDHANGWMVS 381
+ + H +VS
Sbjct: 406 LKGYISHKVALVVS 419
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 268 QKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRN 327
Q+ + PY EL N G + +++ ++ F D+ L+ + ++ + +
Sbjct: 250 QRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYKRNILR 309
Query: 328 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDI 387
++ Y +SL D+A ++L +A +AE V + I+DG I A ++ +G + E +
Sbjct: 310 LTQKYLTLSLQDIANMVQLGNAK---EAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQ 366
Query: 388 YSTNE 392
Y ++E
Sbjct: 367 YKSSE 371
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster
GN=PCID2 PE=1 SV=2
Length = 395
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 34/240 (14%)
Query: 164 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF---------CRYLFYLGKI 214
LG L+N L + Y N KL P A N F Y +++G+
Sbjct: 164 LGMMNLVNQLFKIYFRIN------KLHLCKPLIRAIDNCIFKDSFPLPEQITYKYFVGRR 217
Query: 215 RTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAII-----VRLLLGEIPERTVFMQK 269
Y A + L A P R NK I+ V++LLG +P +++ +
Sbjct: 218 AMFDSNYQAAVQYLSYAFSNCPD-----RFASNKRLILIYLVPVKMLLGYLPSKSLLQRY 272
Query: 270 GMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNIS 329
L + +L A++ G++ F + L+ +L+ V R + +
Sbjct: 273 D----LLLFLDLAMAMKAGNVNRFDEIVRDQELVLIRSGIYLLVEKLKFLVYRNLFKKVF 328
Query: 330 I--SYSRISLADVAKKLRLDSANPVA--DAESIVSKAIRDGAIDATVDHA-NGWMVSKET 384
+ ++ + D L V+ + IV+ I DG I + HA N +VSK+
Sbjct: 329 VIRKSHQLDMGDFLSALHFVGLTDVSLDETHCIVANLIYDGKIKGYISHAHNKLVVSKQN 388
>sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=groL2 PE=3 SV=1
Length = 541
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 291 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 343
+L KSVA K ++ + D T V L +++ GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVKAGLRNVAAGANPIALGAGIAKAADAVSE 128
Query: 344 LRLDSANPVADAESI 358
L SA PV DA+SI
Sbjct: 129 ALLASATPVKDAKSI 143
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 28/179 (15%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 272 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 317
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I+ +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTINGRIDQVN 406
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 272 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 317
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 272 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 317
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 242 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 291
Query: 272 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 317
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 292 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 351
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 352 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 406
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + E+ A +A + + R C K+ ++ +L M+ G+
Sbjct: 240 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML----------MKSGI 289
Query: 272 E----KALRPY---------FELTNAVRIGDLELFKSVAEKFSSTFSSDR-TNNLIVRLR 317
+ +PY L +A + D+ F+ + + S D I L
Sbjct: 290 NPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELL 349
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376
N+ L + Y+RI + ++K+L +D VAD ES++ + I D I +D N
Sbjct: 350 RNIRTQVLIKLIKPYTRIHIPFISKELNID----VADVESLLVQCILDNTIHGRIDQVN 404
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 182 LYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALG 241
LY +A K+RS P + + C GK+ + + +A+ +A R A
Sbjct: 220 LYQKALKVRSAVPHPKIQGVIRECG-----GKMHMSEENWKEAQSDFFEAFRNYDEAGDL 274
Query: 242 FRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPY---------FELTNAVRIGDLEL 292
R+Q K+ ++ +L+ + F + M +PY EL +A + D+
Sbjct: 275 RRIQVLKYLLLTTMLMK--SDINPFDSQEM----KPYRNDPRIFAMTELVDAYQRDDIYR 328
Query: 293 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPV 352
++ V +K + + I + N+ G+ + Y+R+ ++ +A++LR+ + V
Sbjct: 329 YEDVLQKNTDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRI-TEPEV 387
Query: 353 ADAESIVSKAIRDGAIDATVDHANG 377
D I+S I DG + +D G
Sbjct: 388 MD---ILSFLIVDGRVKGRIDEHKG 409
>sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=groL2 PE=1 SV=1
Length = 540
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 291 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 343
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGSGISKAADAVSE 128
Query: 344 LRLDSANPVADAESI 358
L SA PV D ++I
Sbjct: 129 ALLASATPVDDKKAI 143
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 290 LELFKSVAEKFSSTFSSDRT-NNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDS 348
L +F+ V ++FS S D ++ + L N++ L I +SR+ ++ +AK + L
Sbjct: 290 LHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDL-- 347
Query: 349 ANPVADAESIVSKAIRDGAIDATVDHANGWMV 380
PV E +S I D + +D G ++
Sbjct: 348 --PVDVVERKLSLMILDKKYNGILDQGTGTLI 377
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 33/210 (15%)
Query: 181 NLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 240
+LY +A +++S P + C GK+ + E+ A +A + A
Sbjct: 220 DLYKKALEIKSAIPHPRIMGIIRECG-----GKMHMAEKEWEKAHTDFFEAFKNYDEAGN 274
Query: 241 GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPY------FELTNAVRI---GDLE 291
R+QC K+ ++ +L+ T+ E +PY +TN V D+
Sbjct: 275 SRRIQCLKYLVLACMLMLS----TINPFDSTEA--KPYKNDPDILAMTNLVMAYEKNDIY 328
Query: 292 LFKSVAEKFSSTFSSD-----RTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRL 346
F+ + + T D +L+ +R V+ L+ Y+RI ++ ++K+L +
Sbjct: 329 AFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLK----PYTRIRISFISKELNI 384
Query: 347 DSANPVADAESIVSKAIRDGAIDATVDHAN 376
P +D ES++ I D I ++D N
Sbjct: 385 ----PSSDVESLLVSLILDNKIRGSIDQVN 410
>sp|Q05972|CH601_SYNY3 60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=groL1 PE=1 SV=4
Length = 541
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 279 FELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLA 338
EL + V + L + A K ++ + D T V L H +++ GLRN++ + ISL
Sbjct: 59 IELEDHVENTGVSLIRQAASK-TNDVAGDGTTTATV-LAHAIVKEGLRNVAAGANPISLK 116
Query: 339 ---DVAKKLRL----DSANPVADAESIVSKAIRDGAIDATVDHANGWMVS 381
D A + + A PV D+++I + GAI A D G M++
Sbjct: 117 RGIDKATDFLVARIKEHAQPVGDSKAIA----QVGAISAGNDEEVGQMIA 162
>sp|A6SM77|EIF3E_BOTFB Eukaryotic translation initiation factor 3 subunit E OS=Botryotinia
fuckeliana (strain B05.10) GN=int6 PE=3 SV=1
Length = 452
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 293 FKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISY----SRISLADVAKKLRLDS 348
F+ +K S R++ +V N + IS SY RI + D++ +L L+
Sbjct: 333 FEEAQKKLSEAEEVLRSDFFLVAASENFVEAARHLISESYCKIHQRIDIKDLSARLGLNQ 392
Query: 349 ANPVADAESIVSKAIRDGAIDATVDHANGWMV 380
D E + IRD +DA +D+ G +V
Sbjct: 393 D----DGEKWIVNLIRDTRVDAKIDYKEGTVV 420
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMV 380
++RISL D++ +L L++ DAE + IRD +DA +D+ G +V
Sbjct: 367 HARISLKDLSARLGLNND----DAEKWIVNLIRDTRLDAKIDYKEGTVV 411
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 212 GKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGM 271
GK+ + ++ +A +A + A R+QC K+ ++ +L+ E V G
Sbjct: 238 GKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM----ESEVNPFDGQ 293
Query: 272 EKALRPY------FELTN---AVRIGDLELFKSVAEKFSSTFSSD-----RTNNLIVRLR 317
E +PY +TN A + ++ F+ + + T D +L+ ++R
Sbjct: 294 EA--KPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTIMDDPFIRNYMEDLLKKVR 351
Query: 318 HNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 377
V+ ++ Y++I + ++K+L + P D ++ I D ID +D N
Sbjct: 352 TQVLLKLIK----PYTKIGIPFISKELNV----PETDVTELLVSLILDSRIDGHIDEMNR 403
Query: 378 WMVSKETGD 386
+++ ++G+
Sbjct: 404 YLLRGDSGN 412
>sp|A5GNA9|CH602_SYNPW 60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2
PE=3 SV=1
Length = 544
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 279 FELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLA 338
EL + + + L + A K ++ + D T V L H +++ GLRN++ + I+L
Sbjct: 59 IELEDHIENTGVALIRQAASK-TNDAAGDGTTTATV-LAHAMVKAGLRNVAAGANAITLK 116
Query: 339 ---DVAKKLRL----DSANPVADAESIVSKAIRDGAIDATVDHANGWMVS 381
D A + D ANP++D+ +I + G I A D G M++
Sbjct: 117 KGIDKASDFLVAEIKDKANPISDSNAIA----QVGTISAGNDEEVGRMIA 162
>sp|Q1BCW7|CH602_MYCSS 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain MCS) GN=groL2 PE=3
SV=1
Length = 540
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 291 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 343
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 344 LRLDSANPVADAESI 358
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|A1UC26|CH602_MYCSK 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain KMS) GN=groL2 PE=3
SV=1
Length = 540
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 291 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 343
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 344 LRLDSANPVADAESI 358
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|A3PVQ7|CH602_MYCSJ 60 kDa chaperonin 2 OS=Mycobacterium sp. (strain JLS) GN=groL2 PE=3
SV=1
Length = 540
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 291 ELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISL-------ADVAKK 343
+L KSVA K ++ + D T V L ++R GLRN++ + I+L AD +
Sbjct: 71 QLVKSVATK-TNDVAGDGTTTATV-LAQALVRAGLRNVAAGANPIALGAGISKAADAVSE 128
Query: 344 LRLDSANPVADAESI 358
L +A PV D I
Sbjct: 129 ALLAAATPVDDKSGI 143
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans
GN=C27F2.10 PE=3 SV=1
Length = 413
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 8/178 (4%)
Query: 207 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVF 266
Y ++LG+ + A++SLL A R P ++ + + + I V++ LG +P +
Sbjct: 224 YNYFLGRKAMFDADLNLAEKSLLYAFRNCPADSMSNKRKILIYLIPVKMFLGHMPTSQLL 283
Query: 267 MQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLR 326
E L + ++ V+ G+L + F ++ +LR RT +
Sbjct: 284 ----HEYRLDEFQDVVAGVKDGNLAQLDGALAANEAFFIKCGIFLMLEKLRMITFRTLFK 339
Query: 327 NIS--ISYSRISLADVAKKLRLDSANPV--ADAESIVSKAIRDGAIDATVDHANGWMV 380
+S + ++I L LR V + E I++ I I + H + +V
Sbjct: 340 KVSQIVGTAQIPLDAFQTALRFVGVTDVDMDELECIIANLIASKKIKGYLSHQHQKLV 397
>sp|Q9FE46|GSTFC_ARATH Glutathione S-transferase F12 OS=Arabidopsis thaliana GN=GSTF12
PE=1 SV=1
Length = 214
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 266 FMQKGMEKALRPYFELTNAVRIGDLELFKS--VAEKFSSTFSSDRTNNLIVRLRHNVIRT 323
F QK E LR F A+ GD +LF+S +A +++ F+ TN L L H I
Sbjct: 38 FEQKKPEHLLRQPFGQVPAIEDGDFKLFESRAIARYYATKFADQGTNLLGKSLEHRAIVD 97
Query: 324 GLRNISISYSRI 335
++ Y +
Sbjct: 98 QWADVETYYFNV 109
>sp|A6VQB0|CMOA_ACTSZ tRNA (cmo5U34)-methyltransferase OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=cmoA PE=3 SV=1
Length = 241
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 296 VAEKFSSTFSSDRTNNLIVRLRHNVIR-TGLRNISISYSRISLADVAKKLRLDSAN 350
++EKF F D TNNL++ L H R G + +S R +L +V +R+DS+N
Sbjct: 161 LSEKFR--FKDDTTNNLLIELHHAFKRANGYSELEVSQKRAALENV---MRIDSSN 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,028,371
Number of Sequences: 539616
Number of extensions: 6011723
Number of successful extensions: 27763
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 27667
Number of HSP's gapped (non-prelim): 82
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)