Query 012934
Match_columns 453
No_of_seqs 282 out of 846
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 9E-103 3E-107 819.7 19.0 444 1-447 41-513 (523)
2 3t5v_B Nuclear mRNA export pro 100.0 3.3E-47 1.1E-51 397.2 22.5 329 77-409 57-451 (455)
3 3t5x_A PCI domain-containing p 100.0 2E-43 6.7E-48 333.3 16.3 195 194-399 3-201 (203)
4 4b4t_P 26S proteasome regulato 100.0 2.8E-27 9.5E-32 247.7 24.0 280 122-409 132-427 (445)
5 3txn_A 26S proteasome regulato 99.9 6.9E-25 2.3E-29 225.4 28.3 249 93-385 108-363 (394)
6 4b4t_Q 26S proteasome regulato 99.9 6.8E-21 2.3E-25 192.8 24.5 299 97-405 108-420 (434)
7 4b4t_R RPN7, 26S proteasome re 99.7 2.9E-16 9.8E-21 163.3 23.3 253 140-402 144-408 (429)
8 4b4t_O 26S proteasome regulato 99.7 4E-16 1.4E-20 160.6 15.8 215 164-384 124-353 (393)
9 4b0z_A RPN12, 26S proteasome r 99.5 3.6E-13 1.2E-17 128.7 15.9 182 173-361 13-214 (229)
10 1ufm_A COP9 complex subunit 4; 99.2 7.8E-12 2.7E-16 100.9 6.4 66 315-384 11-76 (84)
11 1qqe_A Vesicular transport pro 98.3 8.3E-05 2.8E-09 71.6 21.1 222 94-318 47-282 (292)
12 3chm_A COP9 signalosome comple 98.2 1.1E-05 3.6E-10 73.3 11.1 98 275-384 59-157 (169)
13 3ro3_A PINS homolog, G-protein 98.1 0.00017 5.9E-09 60.2 17.5 152 81-235 6-159 (164)
14 3ulq_A Response regulator aspa 98.0 0.00031 1.1E-08 69.6 19.8 178 81-261 100-281 (383)
15 3gw4_A Uncharacterized protein 98.0 0.00038 1.3E-08 61.4 17.5 152 83-237 25-179 (203)
16 3ro2_A PINS homolog, G-protein 98.0 0.00085 2.9E-08 62.9 20.8 176 83-261 82-280 (338)
17 3ro2_A PINS homolog, G-protein 97.9 0.0029 1E-07 59.2 23.9 175 84-261 43-240 (338)
18 3sf4_A G-protein-signaling mod 97.9 0.0005 1.7E-08 67.1 18.6 174 86-262 189-365 (406)
19 3sf4_A G-protein-signaling mod 97.9 0.0011 3.8E-08 64.6 21.0 177 82-261 85-284 (406)
20 4a1s_A PINS, partner of inscut 97.9 0.0027 9.3E-08 62.5 23.4 173 86-261 88-280 (411)
21 4a1s_A PINS, partner of inscut 97.9 0.0013 4.3E-08 64.9 20.7 177 82-261 124-320 (411)
22 3q15_A PSP28, response regulat 97.8 0.00097 3.3E-08 66.0 18.6 178 81-261 98-278 (378)
23 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0013 4.4E-08 63.6 19.1 203 94-301 46-258 (307)
24 3ulq_A Response regulator aspa 97.7 0.0054 1.8E-07 60.5 21.3 153 83-237 142-296 (383)
25 3gw4_A Uncharacterized protein 97.6 0.0029 9.8E-08 55.6 17.0 135 94-237 2-139 (203)
26 3q15_A PSP28, response regulat 97.5 0.018 6.3E-07 56.7 22.6 151 85-238 142-294 (378)
27 3ro3_A PINS homolog, G-protein 97.5 0.0022 7.5E-08 53.3 13.2 111 126-236 8-120 (164)
28 2ho1_A Type 4 fimbrial biogene 97.4 0.02 6.9E-07 52.0 19.7 144 78-238 31-174 (252)
29 3u3w_A Transcriptional activat 97.4 0.0086 2.9E-07 57.0 17.8 143 91-237 82-228 (293)
30 3nf1_A KLC 1, kinesin light ch 97.3 0.0066 2.3E-07 56.6 16.1 152 84-236 111-309 (311)
31 3nf1_A KLC 1, kinesin light ch 97.3 0.011 3.9E-07 55.0 17.7 153 84-237 69-227 (311)
32 4b4t_Q 26S proteasome regulato 97.3 0.0061 2.1E-07 60.5 16.6 153 81-237 53-207 (434)
33 2qfc_A PLCR protein; TPR, HTH, 97.3 0.0046 1.6E-07 58.9 14.6 142 91-235 82-226 (293)
34 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0084 2.9E-07 57.8 16.6 140 93-237 85-226 (307)
35 1hz4_A MALT regulatory protein 97.3 0.014 4.7E-07 57.0 18.2 174 85-262 15-192 (373)
36 1qqe_A Vesicular transport pro 97.3 0.015 5.2E-07 55.5 18.2 144 91-237 84-231 (292)
37 3edt_B KLC 2, kinesin light ch 97.2 0.0094 3.2E-07 54.5 16.0 147 86-233 87-280 (283)
38 3uq3_A Heat shock protein STI1 97.2 0.052 1.8E-06 48.9 20.7 143 86-238 7-172 (258)
39 3u3w_A Transcriptional activat 97.2 0.009 3.1E-07 56.9 15.9 141 91-234 122-266 (293)
40 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0097 3.3E-07 52.9 14.8 147 83-247 5-163 (213)
41 3edt_B KLC 2, kinesin light ch 97.2 0.024 8.3E-07 51.6 17.8 150 86-236 45-200 (283)
42 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0069 2.4E-07 57.7 14.3 144 89-235 120-267 (293)
43 1hz4_A MALT regulatory protein 97.1 0.087 3E-06 51.2 21.9 153 81-237 50-206 (373)
44 2vq2_A PILW, putative fimbrial 96.9 0.063 2.2E-06 47.1 17.6 137 84-238 8-146 (225)
45 2q7f_A YRRB protein; TPR, prot 96.9 0.018 6.2E-07 51.7 14.1 139 79-238 18-158 (243)
46 3uq3_A Heat shock protein STI1 96.9 0.076 2.6E-06 47.7 18.1 140 90-237 44-205 (258)
47 4eqf_A PEX5-related protein; a 96.8 0.042 1.5E-06 53.0 17.1 34 205-238 213-246 (365)
48 4i17_A Hypothetical protein; T 96.8 0.036 1.2E-06 49.9 15.4 136 88-237 11-149 (228)
49 2ho1_A Type 4 fimbrial biogene 96.8 0.062 2.1E-06 48.7 16.8 129 90-237 77-207 (252)
50 3qky_A Outer membrane assembly 96.7 0.037 1.3E-06 51.2 15.4 142 88-238 19-181 (261)
51 3as5_A MAMA; tetratricopeptide 96.7 0.034 1.2E-06 47.1 13.7 136 82-238 6-143 (186)
52 3hym_B Cell division cycle pro 96.6 0.09 3.1E-06 49.2 16.9 129 95-238 136-269 (330)
53 2vq2_A PILW, putative fimbrial 96.5 0.12 4.2E-06 45.2 16.5 127 91-236 49-178 (225)
54 2fo7_A Synthetic consensus TPR 96.5 0.11 3.9E-06 41.0 14.8 125 91-236 8-134 (136)
55 3as5_A MAMA; tetratricopeptide 96.5 0.075 2.6E-06 44.9 14.5 127 90-237 48-176 (186)
56 3qky_A Outer membrane assembly 96.4 0.17 5.9E-06 46.6 17.5 136 93-239 61-229 (261)
57 2yhc_A BAMD, UPF0169 lipoprote 96.3 0.24 8.1E-06 44.9 17.7 160 91-259 11-199 (225)
58 2q7f_A YRRB protein; TPR, prot 96.3 0.19 6.5E-06 44.8 16.6 128 90-238 63-192 (243)
59 1fch_A Peroxisomal targeting s 96.3 0.35 1.2E-05 46.1 19.4 89 89-192 69-157 (368)
60 3vtx_A MAMA; tetratricopeptide 96.3 0.14 4.9E-06 44.1 15.2 126 92-238 13-140 (184)
61 3mkr_A Coatomer subunit epsilo 96.2 0.095 3.3E-06 50.2 15.0 116 131-261 134-251 (291)
62 4eqf_A PEX5-related protein; a 96.1 0.39 1.3E-05 46.1 18.6 93 136-238 186-280 (365)
63 2vyi_A SGTA protein; chaperone 96.0 0.31 1.1E-05 38.4 15.1 100 127-238 12-113 (131)
64 3ieg_A DNAJ homolog subfamily 96.0 0.11 3.7E-06 49.0 14.3 199 92-309 128-338 (359)
65 1elr_A TPR2A-domain of HOP; HO 96.0 0.13 4.4E-06 40.8 12.7 104 128-237 5-111 (131)
66 3hym_B Cell division cycle pro 96.0 0.12 4E-06 48.3 14.2 134 90-238 165-303 (330)
67 2y4t_A DNAJ homolog subfamily 96.0 1.1 3.9E-05 43.9 22.0 187 86-292 28-229 (450)
68 3ieg_A DNAJ homolog subfamily 96.0 1.1 3.6E-05 42.0 22.2 95 132-238 125-221 (359)
69 3sz7_A HSC70 cochaperone (SGT) 95.9 0.14 4.9E-06 43.7 13.3 101 127-239 11-113 (164)
70 2vgx_A Chaperone SYCD; alterna 95.9 0.18 6E-06 43.1 13.7 32 206-237 90-121 (148)
71 3urz_A Uncharacterized protein 95.9 0.4 1.4E-05 42.9 16.7 143 89-237 9-189 (208)
72 4gco_A Protein STI-1; structur 95.8 0.055 1.9E-06 45.1 9.7 34 205-238 81-114 (126)
73 1fch_A Peroxisomal targeting s 95.8 0.33 1.1E-05 46.3 16.7 134 90-237 104-249 (368)
74 3rkv_A Putative peptidylprolyl 95.8 0.22 7.5E-06 42.4 13.9 103 90-238 17-130 (162)
75 3fp2_A TPR repeat-containing p 95.8 0.16 5.4E-06 51.4 15.0 133 90-237 316-460 (537)
76 2gw1_A Mitochondrial precursor 95.7 0.22 7.6E-06 49.8 15.8 102 130-237 375-481 (514)
77 3u4t_A TPR repeat-containing p 95.7 1.2 4E-05 40.4 21.4 129 93-238 46-175 (272)
78 1na0_A Designed protein CTPR3; 95.6 0.44 1.5E-05 37.1 14.2 99 128-238 10-110 (125)
79 2xcb_A PCRH, regulatory protei 95.6 0.23 7.9E-06 41.5 13.1 32 206-237 87-118 (142)
80 2lni_A Stress-induced-phosphop 95.6 0.32 1.1E-05 38.7 13.5 34 205-238 84-117 (133)
81 4i17_A Hypothetical protein; T 95.5 0.33 1.1E-05 43.5 14.6 136 90-238 48-213 (228)
82 3vtx_A MAMA; tetratricopeptide 95.5 0.47 1.6E-05 40.7 15.1 123 93-236 48-172 (184)
83 2xpi_A Anaphase-promoting comp 95.5 0.33 1.1E-05 50.0 16.2 131 92-237 415-548 (597)
84 2pl2_A Hypothetical conserved 95.5 0.36 1.2E-05 43.5 14.8 129 90-238 45-184 (217)
85 3gyz_A Chaperone protein IPGC; 95.4 0.29 1E-05 42.4 13.5 33 206-238 105-137 (151)
86 1xnf_A Lipoprotein NLPI; TPR, 95.4 0.58 2E-05 42.4 16.2 33 205-237 215-247 (275)
87 2e2e_A Formate-dependent nitri 95.4 0.13 4.6E-06 44.2 11.1 123 95-238 21-148 (177)
88 3u4t_A TPR repeat-containing p 95.3 0.15 5E-06 46.6 11.8 131 90-238 9-141 (272)
89 1xnf_A Lipoprotein NLPI; TPR, 95.2 0.26 8.7E-06 44.8 13.0 126 96-238 17-144 (275)
90 2fbn_A 70 kDa peptidylprolyl i 95.1 0.45 1.5E-05 41.8 13.9 103 130-238 41-155 (198)
91 2y4t_A DNAJ homolog subfamily 95.0 0.27 9.1E-06 48.5 13.5 200 91-309 150-361 (450)
92 1w3b_A UDP-N-acetylglucosamine 95.0 1.4 4.9E-05 42.5 18.7 61 171-237 241-303 (388)
93 3fp2_A TPR repeat-containing p 95.0 0.44 1.5E-05 48.0 15.4 127 90-237 282-410 (537)
94 2xpi_A Anaphase-promoting comp 95.0 0.38 1.3E-05 49.5 15.0 195 91-309 380-582 (597)
95 4b4t_T 26S proteasome regulato 95.0 0.17 5.7E-06 49.1 11.4 181 175-361 12-223 (274)
96 3q49_B STIP1 homology and U bo 95.0 0.24 8.3E-06 40.2 10.9 98 128-237 10-109 (137)
97 3cv0_A Peroxisome targeting si 94.9 1.3 4.5E-05 40.9 17.3 34 205-238 172-205 (327)
98 1a17_A Serine/threonine protei 94.9 1 3.5E-05 37.2 15.0 130 85-233 14-145 (166)
99 2xev_A YBGF; tetratricopeptide 94.9 0.75 2.5E-05 36.7 13.6 102 131-238 6-109 (129)
100 2gw1_A Mitochondrial precursor 94.8 1.1 3.8E-05 44.6 17.6 130 96-238 201-337 (514)
101 3cv0_A Peroxisome targeting si 94.8 0.79 2.7E-05 42.5 15.6 136 88-238 25-171 (327)
102 1w3b_A UDP-N-acetylglucosamine 94.6 0.85 2.9E-05 44.2 15.8 28 209-236 309-336 (388)
103 3upv_A Heat shock protein STI1 94.6 0.5 1.7E-05 38.0 12.0 96 129-236 6-103 (126)
104 2fo7_A Synthetic consensus TPR 94.6 0.7 2.4E-05 36.1 12.6 97 129-237 3-101 (136)
105 1elw_A TPR1-domain of HOP; HOP 94.6 0.89 3E-05 34.9 13.0 98 129-238 6-105 (118)
106 1kt0_A FKBP51, 51 kDa FK506-bi 94.6 0.72 2.5E-05 47.1 15.7 107 85-237 269-383 (457)
107 2dba_A Smooth muscle cell asso 94.6 0.44 1.5E-05 38.8 11.6 98 131-237 32-131 (148)
108 1a17_A Serine/threonine protei 94.5 1.1 3.7E-05 37.1 14.1 97 130-238 16-114 (166)
109 4gyw_A UDP-N-acetylglucosamine 94.3 0.94 3.2E-05 49.6 16.6 128 90-238 15-144 (723)
110 1ihg_A Cyclophilin 40; ppiase 94.1 1 3.5E-05 44.7 15.2 59 173-237 279-339 (370)
111 1hxi_A PEX5, peroxisome target 94.0 0.63 2.2E-05 38.0 11.4 95 90-237 23-117 (121)
112 2pl2_A Hypothetical conserved 94.0 0.6 2E-05 42.0 12.2 127 88-235 9-148 (217)
113 4abn_A Tetratricopeptide repea 94.0 0.83 2.8E-05 46.8 14.6 129 95-238 148-291 (474)
114 4gcn_A Protein STI-1; structur 93.9 0.85 2.9E-05 37.5 12.1 99 133-237 14-115 (127)
115 1p5q_A FKBP52, FK506-binding p 93.9 1.1 3.9E-05 43.5 14.9 107 126-238 146-263 (336)
116 4abn_A Tetratricopeptide repea 93.8 0.7 2.4E-05 47.3 13.8 130 85-236 103-252 (474)
117 2vsy_A XCC0866; transferase, g 93.8 0.91 3.1E-05 47.1 14.8 130 88-238 27-161 (568)
118 2kck_A TPR repeat; tetratricop 93.1 0.21 7.4E-06 38.3 6.6 97 131-237 10-109 (112)
119 1p5q_A FKBP52, FK506-binding p 92.7 5 0.00017 38.8 17.3 137 85-233 148-293 (336)
120 3mv2_B Coatomer subunit epsilo 92.6 0.59 2E-05 46.0 10.3 125 130-264 103-231 (310)
121 4ga2_A E3 SUMO-protein ligase 92.5 1.1 3.6E-05 38.0 10.8 97 130-238 34-133 (150)
122 3k9i_A BH0479 protein; putativ 92.5 0.41 1.4E-05 38.4 7.7 62 171-238 31-94 (117)
123 2vsy_A XCC0866; transferase, g 92.5 0.96 3.3E-05 47.0 12.5 120 98-238 3-124 (568)
124 2yhc_A BAMD, UPF0169 lipoprote 92.4 2.6 8.8E-05 37.8 14.0 62 173-237 153-216 (225)
125 3ma5_A Tetratricopeptide repea 92.4 0.37 1.3E-05 37.9 7.2 60 172-237 12-73 (100)
126 3n71_A Histone lysine methyltr 92.0 5 0.00017 41.7 17.3 136 94-233 319-463 (490)
127 2l6j_A TPR repeat-containing p 92.0 1.5 5.2E-05 33.6 10.5 82 172-259 9-93 (111)
128 2h6f_A Protein farnesyltransfe 91.8 1.3 4.5E-05 44.3 12.1 129 90-239 103-234 (382)
129 2kc7_A BFR218_protein; tetratr 91.6 0.79 2.7E-05 35.0 8.2 59 175-239 8-69 (99)
130 4ga2_A E3 SUMO-protein ligase 91.6 0.65 2.2E-05 39.3 8.4 60 173-238 37-98 (150)
131 1na3_A Designed protein CTPR2; 91.6 1.3 4.4E-05 32.7 9.3 62 171-238 13-76 (91)
132 1ouv_A Conserved hypothetical 91.3 4.3 0.00015 37.0 14.3 122 88-234 10-143 (273)
133 2pzi_A Probable serine/threoni 91.2 0.56 1.9E-05 50.6 9.2 127 89-237 438-566 (681)
134 1hh8_A P67PHOX, NCF-2, neutrop 90.7 3.3 0.00011 36.0 12.4 93 130-237 9-103 (213)
135 2c2l_A CHIP, carboxy terminus 90.7 1.7 5.6E-05 41.0 11.0 96 130-237 7-104 (281)
136 2kat_A Uncharacterized protein 90.4 1.1 3.8E-05 35.4 8.2 62 170-237 22-85 (115)
137 2hr2_A Hypothetical protein; a 90.3 6.1 0.00021 34.8 13.5 116 85-237 12-134 (159)
138 2pzi_A Probable serine/threoni 90.1 9.7 0.00033 40.8 17.8 97 205-310 467-567 (681)
139 2ond_A Cleavage stimulation fa 90.0 13 0.00043 34.9 17.5 97 129-238 101-202 (308)
140 3mv2_B Coatomer subunit epsilo 89.8 6 0.00021 38.7 14.4 193 88-301 105-307 (310)
141 2xev_A YBGF; tetratricopeptide 89.7 1.9 6.6E-05 34.1 9.2 62 174-238 9-72 (129)
142 1elw_A TPR1-domain of HOP; HOP 89.6 2.4 8.4E-05 32.3 9.5 61 171-237 8-70 (118)
143 4gyw_A UDP-N-acetylglucosamine 89.5 5.8 0.0002 43.3 15.5 100 127-238 9-110 (723)
144 3mkr_A Coatomer subunit epsilo 89.5 12 0.0004 35.3 16.0 125 88-237 38-162 (291)
145 3sz7_A HSC70 cochaperone (SGT) 89.3 2 7E-05 36.2 9.5 64 168-237 12-77 (164)
146 3urz_A Uncharacterized protein 89.0 6 0.00021 34.9 12.9 63 171-239 58-122 (208)
147 4gcn_A Protein STI-1; structur 88.8 1.4 4.8E-05 36.1 7.8 58 174-237 15-74 (127)
148 1elr_A TPR2A-domain of HOP; HO 88.6 3 0.0001 32.5 9.5 61 171-237 8-70 (131)
149 4gco_A Protein STI-1; structur 88.5 1.5 5.2E-05 36.0 7.9 57 175-237 21-79 (126)
150 3q49_B STIP1 homology and U bo 88.5 2.6 8.8E-05 33.8 9.2 61 171-237 13-75 (137)
151 3n71_A Histone lysine methyltr 88.5 4.9 0.00017 41.8 13.4 92 140-233 322-421 (490)
152 3qww_A SET and MYND domain-con 88.5 2 6.9E-05 44.0 10.3 92 140-233 311-410 (433)
153 1ouv_A Conserved hypothetical 88.2 14 0.00049 33.4 15.2 113 97-234 91-215 (273)
154 1wao_1 Serine/threonine protei 88.1 3 0.0001 42.8 11.4 57 175-237 48-106 (477)
155 2vyi_A SGTA protein; chaperone 88.0 7.7 0.00026 29.8 13.7 119 82-221 10-130 (131)
156 2h6f_A Protein farnesyltransfe 87.5 8.8 0.0003 38.2 14.2 144 127-287 97-246 (382)
157 2xcb_A PCRH, regulatory protei 87.5 1.8 6.2E-05 35.8 7.8 60 173-238 24-85 (142)
158 3upv_A Heat shock protein STI1 87.4 3.4 0.00012 32.9 9.2 60 173-238 10-71 (126)
159 2kck_A TPR repeat; tetratricop 87.4 2.5 8.6E-05 31.9 8.1 59 173-237 12-72 (112)
160 4g1t_A Interferon-induced prot 87.4 9.3 0.00032 37.6 14.3 138 95-238 62-208 (472)
161 2if4_A ATFKBP42; FKBP-like, al 87.3 2 7E-05 41.7 9.2 60 172-237 235-296 (338)
162 2vgx_A Chaperone SYCD; alterna 87.1 3.2 0.00011 34.9 9.2 60 173-238 27-88 (148)
163 1hxi_A PEX5, peroxisome target 86.8 2.3 7.8E-05 34.5 7.9 58 175-238 25-84 (121)
164 4g1t_A Interferon-induced prot 86.7 8.3 0.00028 37.9 13.5 110 127-237 51-170 (472)
165 2dba_A Smooth muscle cell asso 86.5 5.4 0.00019 31.9 10.1 68 167-237 28-97 (148)
166 1na0_A Designed protein CTPR3; 86.5 4.6 0.00016 30.9 9.3 62 170-237 12-75 (125)
167 2lni_A Stress-induced-phosphop 86.3 4.8 0.00017 31.4 9.5 61 171-237 20-82 (133)
168 2ond_A Cleavage stimulation fa 85.8 23 0.00078 33.1 15.7 125 91-234 106-232 (308)
169 3gyz_A Chaperone protein IPGC; 85.7 3.4 0.00012 35.4 8.8 61 173-239 42-104 (151)
170 2r5s_A Uncharacterized protein 84.4 4.2 0.00014 34.7 8.8 125 91-237 13-140 (176)
171 3qwp_A SET and MYND domain-con 84.4 3.2 0.00011 42.3 9.2 91 141-233 301-399 (429)
172 2fbn_A 70 kDa peptidylprolyl i 84.3 19 0.00066 30.9 14.2 135 86-232 40-184 (198)
173 2l6j_A TPR repeat-containing p 83.6 8.5 0.00029 29.1 9.6 95 128-228 5-101 (111)
174 1rz4_A Eukaryotic translation 83.3 2.8 9.7E-05 39.2 7.6 116 274-405 98-218 (226)
175 2v5f_A Prolyl 4-hydroxylase su 83.1 3.3 0.00011 32.8 7.0 66 173-238 11-79 (104)
176 3rkv_A Putative peptidylprolyl 82.4 3.6 0.00012 34.5 7.4 65 173-237 17-95 (162)
177 1wi9_A Protein C20ORF116 homol 81.6 4.2 0.00014 31.1 6.5 49 331-383 18-66 (72)
178 2heo_A Z-DNA binding protein 1 81.5 3.3 0.00011 30.8 5.9 41 333-380 24-64 (67)
179 3rjv_A Putative SEL1 repeat pr 81.2 21 0.00073 31.4 12.6 119 94-234 28-158 (212)
180 2ooe_A Cleavage stimulation fa 79.6 55 0.0019 33.0 16.7 102 128-238 322-424 (530)
181 2ooe_A Cleavage stimulation fa 78.7 59 0.002 32.8 16.7 128 91-237 328-457 (530)
182 1qbj_A Protein (double-strande 78.7 6.6 0.00023 30.5 7.1 51 334-389 27-77 (81)
183 1qgp_A Protein (double strande 78.1 5.6 0.00019 30.5 6.4 37 334-374 31-67 (77)
184 1na3_A Designed protein CTPR2; 77.3 5.8 0.0002 29.0 6.3 37 202-238 6-42 (91)
185 3ma5_A Tetratricopeptide repea 77.1 5.8 0.0002 30.7 6.5 36 204-239 6-41 (100)
186 1pc2_A Mitochondria fission pr 76.7 4.5 0.00015 35.5 6.1 37 201-237 67-103 (152)
187 3ffl_A Anaphase-promoting comp 75.9 31 0.0011 30.6 11.4 132 77-230 13-147 (167)
188 3ffl_A Anaphase-promoting comp 75.4 6.5 0.00022 35.0 6.9 61 174-234 27-92 (167)
189 3qou_A Protein YBBN; thioredox 74.6 18 0.00061 33.7 10.4 129 89-238 122-252 (287)
190 3k9i_A BH0479 protein; putativ 74.3 10 0.00035 29.8 7.5 37 202-238 24-60 (117)
191 4f3v_A ESX-1 secretion system 74.2 32 0.0011 33.0 12.1 138 82-237 102-240 (282)
192 3qww_A SET and MYND domain-con 72.7 24 0.00082 35.9 11.4 95 97-193 311-408 (433)
193 3ly7_A Transcriptional activat 71.7 85 0.0029 31.3 15.2 56 177-237 287-342 (372)
194 1kt0_A FKBP51, 51 kDa FK506-bi 71.6 19 0.00064 36.4 10.4 32 205-236 268-299 (457)
195 4f3v_A ESX-1 secretion system 71.6 19 0.00066 34.5 9.8 93 130-233 105-199 (282)
196 2e2e_A Formate-dependent nitri 70.6 14 0.00048 31.0 7.9 61 171-237 48-113 (177)
197 2c2l_A CHIP, carboxy terminus 69.6 15 0.00053 34.1 8.6 60 173-238 10-71 (281)
198 2cg4_A Regulatory protein ASNC 65.4 17 0.00057 30.9 7.3 41 332-376 20-63 (152)
199 2htj_A P fimbrial regulatory p 64.9 18 0.0006 27.4 6.6 34 333-370 13-46 (81)
200 1ihg_A Cyclophilin 40; ppiase 63.6 28 0.00094 34.2 9.4 30 204-233 272-301 (370)
201 2kat_A Uncharacterized protein 62.4 16 0.00056 28.2 6.2 34 205-238 19-52 (115)
202 1xn7_A Hypothetical protein YH 62.1 11 0.00037 29.1 4.8 40 326-369 8-47 (78)
203 2v5f_A Prolyl 4-hydroxylase su 61.7 11 0.00037 29.7 4.9 29 206-234 6-34 (104)
204 3o48_A Mitochondria fission 1 61.7 19 0.00064 30.9 6.6 37 201-237 74-110 (134)
205 2k02_A Ferrous iron transport 60.2 11 0.00038 29.8 4.6 42 326-371 8-49 (87)
206 1nzn_A CGI-135 protein, fissio 59.5 19 0.00065 30.4 6.2 37 201-237 70-106 (126)
207 3txn_A 26S proteasome regulato 59.1 80 0.0027 31.7 12.0 135 95-233 30-167 (394)
208 3t5v_A Nuclear mRNA export pro 58.1 38 0.0013 33.0 9.1 66 288-359 177-246 (316)
209 3qwp_A SET and MYND domain-con 56.8 73 0.0025 32.0 11.4 98 94-193 297-397 (429)
210 1jgs_A Multiple antibiotic res 56.4 51 0.0017 26.6 8.5 40 333-376 47-86 (138)
211 4b4t_P 26S proteasome regulato 56.4 1.7E+02 0.0058 29.4 16.2 66 167-232 137-204 (445)
212 1ub9_A Hypothetical protein PH 55.5 38 0.0013 25.9 7.2 37 332-372 28-64 (100)
213 1wao_1 Serine/threonine protei 54.9 20 0.00068 36.5 6.8 57 176-238 15-73 (477)
214 4e6h_A MRNA 3'-END-processing 54.6 2.3E+02 0.0078 30.4 17.9 155 94-261 388-558 (679)
215 3bee_A Putative YFRE protein; 54.1 15 0.00051 28.7 4.5 49 183-237 25-75 (93)
216 2r5s_A Uncharacterized protein 53.9 8.8 0.0003 32.6 3.4 57 174-236 13-71 (176)
217 2ia0_A Putative HTH-type trans 52.8 26 0.0009 30.6 6.4 41 332-376 29-72 (171)
218 3i4p_A Transcriptional regulat 52.2 20 0.00068 31.0 5.4 42 331-376 14-58 (162)
219 2jt1_A PEFI protein; solution 51.7 29 0.00098 26.6 5.6 33 333-369 23-55 (77)
220 2cfx_A HTH-type transcriptiona 50.6 27 0.00093 29.3 5.9 41 331-375 16-59 (144)
221 2hr2_A Hypothetical protein; a 50.2 80 0.0027 27.5 9.0 74 83-159 56-134 (159)
222 2y75_A HTH-type transcriptiona 49.1 34 0.0012 28.1 6.2 47 333-383 25-71 (129)
223 2p5v_A Transcriptional regulat 47.6 30 0.001 29.6 5.9 40 332-375 22-64 (162)
224 3ax2_A Mitochondrial import re 47.4 30 0.001 26.4 5.0 41 210-252 22-62 (73)
225 2kc7_A BFR218_protein; tetratr 46.9 37 0.0013 25.1 5.7 30 209-238 4-33 (99)
226 1sfx_A Conserved hypothetical 46.9 77 0.0026 24.1 7.8 38 332-373 32-69 (109)
227 2dbb_A Putative HTH-type trans 46.7 30 0.001 29.2 5.6 42 331-376 20-64 (151)
228 2pn6_A ST1022, 150AA long hypo 45.9 23 0.00079 29.8 4.8 40 332-375 15-57 (150)
229 1y8m_A FIS1; mitochondria, unk 45.5 30 0.001 29.9 5.3 35 203-237 75-109 (144)
230 1xi4_A Clathrin heavy chain; a 45.3 2.3E+02 0.0078 33.7 14.0 141 90-231 1055-1247(1630)
231 2d1h_A ST1889, 109AA long hypo 43.6 96 0.0033 23.6 7.9 38 332-373 34-71 (109)
232 2v79_A DNA replication protein 43.3 30 0.001 29.3 5.0 74 284-369 9-82 (135)
233 3cuo_A Uncharacterized HTH-typ 42.5 76 0.0026 24.0 7.0 37 333-373 37-73 (99)
234 3rjv_A Putative SEL1 repeat pr 42.0 85 0.0029 27.4 8.2 91 130-235 21-119 (212)
235 3lwf_A LIN1550 protein, putati 42.0 37 0.0013 29.5 5.5 50 333-386 43-92 (159)
236 3t8r_A Staphylococcus aureus C 41.7 27 0.00093 29.7 4.5 47 334-384 28-74 (143)
237 2xm6_A Protein corresponding t 41.6 2.7E+02 0.0091 27.4 13.3 16 97-112 56-71 (490)
238 2if4_A ATFKBP42; FKBP-like, al 41.6 25 0.00084 33.8 4.7 64 174-237 186-262 (338)
239 3e4b_A ALGK; tetratricopeptide 40.1 65 0.0022 32.1 7.8 148 80-246 245-399 (452)
240 2vn2_A DNAD, chromosome replic 39.5 77 0.0026 26.1 7.0 63 334-409 51-114 (128)
241 1klx_A Cysteine rich protein B 38.9 50 0.0017 27.0 5.7 87 134-234 32-126 (138)
242 2w25_A Probable transcriptiona 38.6 52 0.0018 27.6 5.9 40 332-375 19-61 (150)
243 2gxg_A 146AA long hypothetical 38.3 53 0.0018 26.8 5.8 39 332-374 48-86 (146)
244 2e1c_A Putative HTH-type trans 38.2 45 0.0015 29.1 5.5 41 332-376 39-82 (171)
245 2cyy_A Putative HTH-type trans 36.9 44 0.0015 28.2 5.1 40 332-375 19-61 (151)
246 4ham_A LMO2241 protein; struct 36.4 1.8E+02 0.0061 23.9 10.2 48 331-384 34-82 (134)
247 3k69_A Putative transcription 36.3 38 0.0013 29.5 4.6 48 333-384 27-74 (162)
248 2hzt_A Putative HTH-type trans 35.4 89 0.003 24.6 6.5 41 332-376 25-66 (107)
249 1ku9_A Hypothetical protein MJ 35.4 57 0.0019 26.5 5.5 40 332-375 39-78 (152)
250 1om2_A Protein (mitochondrial 35.4 39 0.0013 27.1 4.1 41 210-252 25-65 (95)
251 3k0l_A Repressor protein; heli 35.1 78 0.0027 26.5 6.5 40 333-376 59-98 (162)
252 2xm6_A Protein corresponding t 35.1 3.3E+02 0.011 26.7 13.9 112 97-233 92-215 (490)
253 2fbh_A Transcriptional regulat 35.1 65 0.0022 26.1 5.8 41 331-375 49-89 (146)
254 2fa5_A Transcriptional regulat 35.0 1E+02 0.0036 25.5 7.3 38 332-373 61-98 (162)
255 2hr3_A Probable transcriptiona 35.0 59 0.002 26.6 5.5 39 332-374 48-86 (147)
256 1ylf_A RRF2 family protein; st 34.8 43 0.0015 28.5 4.7 47 333-384 29-75 (149)
257 1oyi_A Double-stranded RNA-bin 34.1 45 0.0015 26.0 4.2 31 335-369 31-61 (82)
258 4fhn_B Nucleoporin NUP120; pro 34.1 1.4E+02 0.0049 33.9 10.2 52 173-232 818-869 (1139)
259 3eco_A MEPR; mutlidrug efflux 33.6 38 0.0013 27.5 4.1 38 334-375 47-84 (139)
260 3bdd_A Regulatory protein MARR 33.4 85 0.0029 25.2 6.3 38 333-374 44-81 (142)
261 3tgn_A ADC operon repressor AD 32.9 53 0.0018 26.8 4.9 38 332-374 50-87 (146)
262 3ech_A MEXR, multidrug resista 32.4 59 0.002 26.5 5.1 39 333-375 50-88 (142)
263 1xd7_A YWNA; structural genomi 32.3 60 0.002 27.4 5.2 48 332-385 22-69 (145)
264 2nnn_A Probable transcriptiona 32.0 76 0.0026 25.5 5.7 40 333-376 51-90 (140)
265 3bja_A Transcriptional regulat 32.0 92 0.0031 24.9 6.2 39 332-374 45-83 (139)
266 4gq2_M Nucleoporin NUP120; bet 31.4 46 0.0016 37.3 5.5 52 173-232 816-867 (950)
267 1klx_A Cysteine rich protein B 31.2 89 0.003 25.4 6.0 54 175-234 33-90 (138)
268 3bpv_A Transcriptional regulat 30.5 87 0.003 25.1 5.8 42 332-377 41-82 (138)
269 1i1g_A Transcriptional regulat 30.3 67 0.0023 26.4 5.1 35 332-370 16-50 (141)
270 3qou_A Protein YBBN; thioredox 30.2 3.1E+02 0.011 24.9 14.2 92 137-238 127-218 (287)
271 3bro_A Transcriptional regulat 30.2 58 0.002 26.3 4.7 38 334-375 50-87 (141)
272 2kko_A Possible transcriptiona 30.1 53 0.0018 26.1 4.3 37 333-373 37-73 (108)
273 4a5x_A MITD1, MIT domain-conta 29.8 1.9E+02 0.0066 22.3 8.5 62 80-141 11-78 (86)
274 2fbi_A Probable transcriptiona 29.8 78 0.0027 25.5 5.4 40 333-376 49-88 (142)
275 3tqn_A Transcriptional regulat 29.7 1E+02 0.0035 24.7 6.0 44 333-382 31-75 (113)
276 3g3z_A NMB1585, transcriptiona 29.7 89 0.0031 25.4 5.8 39 333-375 44-82 (145)
277 3oop_A LIN2960 protein; protei 29.6 77 0.0026 25.8 5.4 39 333-375 50-88 (143)
278 3jth_A Transcription activator 29.2 1.2E+02 0.004 23.2 6.1 36 333-372 35-70 (98)
279 3s2w_A Transcriptional regulat 29.1 2E+02 0.007 23.6 8.2 40 333-376 63-102 (159)
280 3bj6_A Transcriptional regulat 29.0 95 0.0032 25.4 5.9 39 332-374 52-90 (152)
281 1on2_A Transcriptional regulat 28.7 1.9E+02 0.0064 23.5 7.7 35 332-370 20-54 (142)
282 3hsr_A HTH-type transcriptiona 28.4 45 0.0015 27.3 3.7 41 332-376 48-88 (140)
283 2qww_A Transcriptional regulat 28.3 86 0.0029 25.8 5.5 34 333-370 54-87 (154)
284 3boq_A Transcriptional regulat 28.1 53 0.0018 27.3 4.1 38 332-373 60-97 (160)
285 1lj9_A Transcriptional regulat 28.0 1.1E+02 0.0038 24.7 6.1 38 333-374 42-79 (144)
286 2nyx_A Probable transcriptiona 28.0 98 0.0034 26.1 5.9 39 333-375 58-96 (168)
287 2rdp_A Putative transcriptiona 27.9 1.1E+02 0.0037 24.9 6.0 38 333-374 55-92 (150)
288 2a61_A Transcriptional regulat 27.6 99 0.0034 25.0 5.7 41 333-377 46-86 (145)
289 1zu2_A Mitochondrial import re 27.3 62 0.0021 28.2 4.4 33 205-237 80-123 (158)
290 4e6h_A MRNA 3'-END-processing 27.3 5.9E+02 0.02 27.1 15.1 168 129-308 380-575 (679)
291 3r0a_A Putative transcriptiona 27.3 2E+02 0.0067 23.3 7.4 34 335-372 43-76 (123)
292 3nrv_A Putative transcriptiona 27.2 86 0.003 25.6 5.3 38 332-373 52-89 (148)
293 3pqk_A Biofilm growth-associat 27.1 2.1E+02 0.0072 21.9 7.9 37 333-373 35-71 (102)
294 1z7u_A Hypothetical protein EF 26.7 70 0.0024 25.5 4.4 39 333-375 34-73 (112)
295 2oqg_A Possible transcriptiona 26.7 2.2E+02 0.0076 22.0 9.0 37 333-373 33-69 (114)
296 2qvo_A Uncharacterized protein 26.4 1.1E+02 0.0039 23.3 5.5 30 335-368 31-60 (95)
297 1s3j_A YUSO protein; structura 26.4 1.1E+02 0.0036 25.1 5.7 39 332-374 49-87 (155)
298 3nqo_A MARR-family transcripti 26.3 67 0.0023 28.0 4.6 41 332-376 55-95 (189)
299 4hbl_A Transcriptional regulat 26.0 74 0.0025 26.2 4.7 40 332-375 53-92 (149)
300 3lpz_A GET4 (YOR164C homolog); 26.0 4.7E+02 0.016 25.5 16.0 28 281-308 251-278 (336)
301 3cjn_A Transcriptional regulat 25.8 1.1E+02 0.0039 25.3 5.9 39 332-374 64-102 (162)
302 2pg4_A Uncharacterized protein 25.6 32 0.0011 26.5 2.1 32 334-369 30-62 (95)
303 2eth_A Transcriptional regulat 25.6 1.3E+02 0.0045 24.7 6.2 38 333-374 57-94 (154)
304 2xvc_A ESCRT-III, SSO0910; cel 25.5 61 0.0021 23.6 3.2 33 333-369 24-56 (59)
305 4b4t_S RPN3, 26S proteasome re 25.4 1.4E+02 0.0047 31.3 7.3 75 81-160 228-303 (523)
306 2lnb_A Z-DNA-binding protein 1 25.3 1.1E+02 0.0037 23.7 4.8 37 328-368 28-64 (80)
307 1ucr_A Protein DSVD; dissimila 25.3 75 0.0026 24.5 3.9 42 330-383 17-59 (78)
308 2pex_A Transcriptional regulat 25.2 1E+02 0.0035 25.3 5.4 39 332-374 59-97 (153)
309 2bv6_A MGRA, HTH-type transcri 25.2 1.3E+02 0.0046 24.1 6.1 38 333-374 50-87 (142)
310 3c18_A Nucleotidyltransferase- 25.2 4.6E+02 0.016 25.1 12.9 130 209-374 134-275 (290)
311 2x4h_A Hypothetical protein SS 25.0 1E+02 0.0035 25.1 5.3 35 331-369 28-62 (139)
312 4g26_A Pentatricopeptide repea 24.8 1.9E+02 0.0065 29.5 8.4 61 168-233 106-168 (501)
313 1r1u_A CZRA, repressor protein 24.8 1.6E+02 0.0056 22.9 6.3 37 333-373 38-74 (106)
314 2w2u_A Hypothetical P60 katani 24.7 1.6E+02 0.0054 22.6 5.9 46 95-140 29-80 (83)
315 3cdh_A Transcriptional regulat 24.7 90 0.0031 25.7 5.0 38 332-373 55-92 (155)
316 3by6_A Predicted transcription 24.7 1E+02 0.0034 25.4 5.1 44 333-382 33-77 (126)
317 2v6y_A AAA family ATPase, P60 24.7 1.6E+02 0.0055 22.5 6.0 49 95-143 21-75 (83)
318 3fm5_A Transcriptional regulat 24.7 69 0.0024 26.4 4.2 38 333-374 53-90 (150)
319 3neu_A LIN1836 protein; struct 24.7 1.3E+02 0.0044 24.6 5.8 45 332-382 34-79 (125)
320 4b8x_A SCO5413, possible MARR- 24.5 64 0.0022 26.9 4.0 40 333-376 50-89 (147)
321 1r7j_A Conserved hypothetical 24.2 1.2E+02 0.004 23.8 5.2 43 335-384 21-63 (95)
322 4b4t_R RPN7, 26S proteasome re 23.7 2.3E+02 0.0078 28.2 8.6 61 172-233 136-196 (429)
323 2pi2_A Replication protein A 3 23.6 17 0.00058 34.6 0.0 38 333-374 223-261 (270)
324 2v6x_A Vacuolar protein sortin 23.5 1.8E+02 0.0063 22.0 6.1 61 83-143 11-77 (85)
325 3e6m_A MARR family transcripti 23.2 1E+02 0.0034 25.8 5.0 39 333-375 66-104 (161)
326 2frh_A SARA, staphylococcal ac 23.0 49 0.0017 26.9 2.8 39 333-375 52-90 (127)
327 1u2w_A CADC repressor, cadmium 22.9 2.5E+02 0.0085 22.5 7.2 36 332-371 54-89 (122)
328 1xmk_A Double-stranded RNA-spe 22.8 1.3E+02 0.0043 23.1 4.9 35 331-369 22-57 (79)
329 1y0u_A Arsenical resistance op 22.6 1.4E+02 0.0049 22.7 5.5 34 333-370 42-75 (96)
330 3kp7_A Transcriptional regulat 22.6 1E+02 0.0036 25.2 4.9 36 331-370 48-83 (151)
331 3u2r_A Regulatory protein MARR 22.3 70 0.0024 27.0 3.8 41 333-377 61-101 (168)
332 1wfd_A Hypothetical protein 15 22.1 2.8E+02 0.0096 21.6 9.3 65 79-143 9-79 (93)
333 1uly_A Hypothetical protein PH 21.8 1.6E+02 0.0054 26.1 6.2 35 333-371 32-66 (192)
334 1tbx_A ORF F-93, hypothetical 21.8 2E+02 0.0069 21.7 6.2 38 333-374 21-62 (99)
335 1z6r_A MLC protein; transcript 21.8 86 0.003 30.9 4.9 37 330-370 26-62 (406)
336 4aik_A Transcriptional regulat 21.6 1.6E+02 0.0055 24.5 6.0 41 333-377 45-85 (151)
337 3mkq_B Coatomer subunit alpha; 21.1 4.3E+02 0.015 23.3 11.2 23 171-193 93-115 (177)
338 3jw4_A Transcriptional regulat 21.0 47 0.0016 27.4 2.3 38 333-374 56-93 (148)
339 2h09_A Transcriptional regulat 20.7 2.1E+02 0.0073 23.6 6.6 34 333-370 53-86 (155)
340 1z05_A Transcriptional regulat 20.7 98 0.0034 30.9 5.1 36 331-370 50-85 (429)
341 2pjp_A Selenocysteine-specific 20.2 2E+02 0.0068 23.2 6.1 41 325-369 9-51 (121)
342 3k2z_A LEXA repressor; winged 20.2 1.7E+02 0.0057 25.7 6.0 34 333-370 23-56 (196)
343 3f3x_A Transcriptional regulat 20.0 86 0.0029 25.5 3.8 37 336-376 52-88 (144)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-103 Score=819.66 Aligned_cols=444 Identities=33% Similarity=0.554 Sum_probs=234.4
Q ss_pred CcccccccchhHHHHHHHhhHHHhcc--CChHHHHHHHHHHcCCCchhHHHHHhcCCCCCCcccc----cccCCC-----
Q 012934 1 METGAHAREVRRIMRAVRLTMALRRK--LKAPVLSAFLNFALAPGSEAHSRLLSYLPKEDEHEME----VDTASS----- 69 (453)
Q Consensus 1 ~~~~~~~~~~r~~~r~~r~~~~~r~~--l~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~----- 69 (453)
|||||.++|+|||+||||.++++||+ |++++|..+|+.+||++++.+..|+++|++++..+++ .+...+
T Consensus 41 i~k~v~~~~~r~~~r~lr~~~~~rk~~~l~~~~l~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (523)
T 4b4t_S 41 ISKTTLTLDPRYIWRSLKDLSSLRNQELLNAETLCFTVNVLYPDSSSFKKNLLKFITSNHKSSVPGSAELRNSYPASFYS 120 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcchHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHCCCCcHHHHHHHHHhccccccccccchhccccCcccccc
Confidence 79999999999999999999999999 9999999999999999999999999999865443221 111111
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH--HHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHH--
Q 012934 70 -GAPAPAKHPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASI--ARLKNMNRRTVDVLAARLYFYYSLCYELTGDLA-- 144 (453)
Q Consensus 70 -~~~~~~~~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv--~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~-- 144 (453)
...++..+++||+|+|+++|++++++|+++|++|.+|+..++ +.++.+||||+|.+.||+||||+++||+.+++.
T Consensus 121 ~~~~~~~~~~~pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~ 200 (523)
T 4b4t_S 121 VNTEKKTIEVTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEE 200 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 112245678999999999999999999999999999999999 679999999999999999999999999988664
Q ss_pred --------HHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCcc-CChhhHHHHHHHHHHHH
Q 012934 145 --------EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEA-HSNQQFCRYLFYLGKIR 215 (453)
Q Consensus 145 --------~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~-~~~~~~v~Y~YY~G~i~ 215 (453)
++|+.|++++|||++|||..||++++|+++|+|++.|.|++|.+++++++||+. .+++|+++|+||.|+|+
T Consensus 201 ~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 201 INSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp --CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999986 89999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHcCCc--CchHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhhhhhhhHHHHHHHHhcCCHHHH
Q 012934 216 TIQLEYTDAKESLLQAARKAPV--AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF 293 (453)
Q Consensus 216 ~~~~dy~~A~~~L~~A~~~~p~--~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l~~Y~~L~~Av~~Gdl~~f 293 (453)
+++++|.+|+++|.+|+++||+ .+.+|++.++|++|+|+||+|++|++++|.++.+++.|.||.+|++||+.||+..|
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F 360 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKF 360 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999997 35799999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 294 KSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 294 ~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
++++++|+..|.+||||+||+||+++|+|++||+|+++|++||++|||.+|+++++ ++|||+|++||.||+|+|+||
T Consensus 361 ~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~---eeaE~iVAkmI~dG~I~A~Id 437 (523)
T 4b4t_S 361 TSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSE---QTVEYMVSRAIRDGVIEAKIN 437 (523)
T ss_dssp HHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHS---SCHHHHHHHHHHHTSSCCEEC
T ss_pred HHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCH---HHHHHHHHHHHHcCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999876 899999999999999999999
Q ss_pred CCCcEEEecccccccCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCCch-hhhhHHHHHHhhH-HHHHHHHhhcc
Q 012934 374 HANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHK-EKESAEKRRERQQ-QEQELAKHIAE 447 (453)
Q Consensus 374 ~~~G~v~~~~~~~v~s~~ep~~~l~~rI~~~l~l~~~~v~amr~p~~~~~-~~~~~~~~~~~~~-~~~e~~~~~~~ 447 (453)
|++|+|.|++..++|++.+|+.+|++||+||++||||+|||||||++.++ +.+++++++++++ .+.+++.+++|
T Consensus 438 h~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMryp~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d 513 (523)
T 4b4t_S 438 HEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDKKTQQNEKSENGENDDDTLDGDLMDDMSD 513 (523)
T ss_dssp TTTCCEECCSSSCC--------------------------------------------------------------
T ss_pred cCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhHHHHHHHhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999997 7777776655532 45555555543
No 2
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-47 Score=397.21 Aligned_cols=329 Identities=14% Similarity=0.069 Sum_probs=270.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHh-hchh-hhHH--HHHHHHHH---HHHHHH-------h---
Q 012934 77 HPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKN-MNRR-TVDV--LAARLYFY---YSLCYE-------L--- 139 (453)
Q Consensus 77 ~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~-~~~r-~~d~--l~ak~~~~---~~~~~e-------~--- 139 (453)
++.....++...|..+.-+|.....+++++...+++.+.. ++.. ..|. +.--++.. ...... .
T Consensus 57 ~w~~f~~~v~~yl~~~rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~ 136 (455)
T 3t5v_B 57 NDTRFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHT 136 (455)
T ss_dssp SCHHHHHHHHHHHHHHHHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred cchhHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcc
Confidence 4555667777788888888888888888888888877543 4333 3554 32211111 001111 1
Q ss_pred --hcCHHHHHHHHHHHHHHhhh-c------c---CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC---c---CccCCh
Q 012934 140 --TGDLAEIRGNLLALHRIATL-R------H---DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP---R---FEAHSN 201 (453)
Q Consensus 140 --~~~l~~~r~~l~~~~rta~~-~------~---~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~---~---p~~~~~ 201 (453)
...++.+.+.++.+|..|.. | + +++|.++++|+++|+||+.|+.++|++++++.+ + .+.+|.
T Consensus 137 ~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~ 216 (455)
T 3t5v_B 137 RSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL 216 (455)
T ss_dssp CTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH
T ss_pred cchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc
Confidence 12588999999999976532 2 3 789999999999999999999999999999742 2 235899
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCcC-----chHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhhhhh
Q 012934 202 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK-APVA-----ALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKAL 275 (453)
Q Consensus 202 ~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~-~p~~-----~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l 275 (453)
+|+++|+||+|++++.+++|.+|+++|.+||++ ||.. ..++++.|+||+|||+|++|++|++.+++++.. +.+
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~-~~L 295 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLS-QET 295 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSC-HHH
T ss_pred cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccch-HHH
Confidence 999999999999999999999999999999999 9985 479999999999999999999999999988542 467
Q ss_pred hh-HHHHHHHHhcCCHHHHHHHHHhcchhhccCcc-HHHHHHHHHHHHHHHHHHH----Hhhc--ccccHHHHHHHhCCC
Q 012934 276 RP-YFELTNAVRIGDLELFKSVAEKFSSTFSSDRT-NNLIVRLRHNVIRTGLRNI----SISY--SRISLADVAKKLRLD 347 (453)
Q Consensus 276 ~~-Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~-~~Lv~rLr~~vir~~irki----~~~Y--srIsL~dIa~~L~l~ 347 (453)
.+ |.+|++||+.||+..|++++++|+..|.++|+ |.+++|||.+|+|+++|++ ..+| ++||+++|+.+|+++
T Consensus 296 ~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~ 375 (455)
T 3t5v_B 296 IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLS 375 (455)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhc
Confidence 77 99999999999999999999999999999999 9999999999999999999 4557 899999999999863
Q ss_pred C-----------------CCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccccccCCccccHHHHHHHHHHHHHHH
Q 012934 348 S-----------------ANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 409 (453)
Q Consensus 348 ~-----------------~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~v~s~~ep~~~l~~rI~~~l~l~~ 409 (453)
. .+|.+||||+||+||.+|+|+|+|+|++|++++++..+ ..+|||.+.+++..+..+|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~---~~~pFP~l~~~~~~~f~~~~ 451 (455)
T 3t5v_B 376 IGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTM---IQEIVPPVNERITKMFPAHS 451 (455)
T ss_dssp HCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSC---GGGTSCCHHHHHHHHSCCCC
T ss_pred cCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCC---CCCCCCChHHHHHHHcCCCC
Confidence 1 14669999999999999999888888888887776554 45999999999998877665
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=333.32 Aligned_cols=195 Identities=18% Similarity=0.270 Sum_probs=175.8
Q ss_pred CcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhhh
Q 012934 194 PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEK 273 (453)
Q Consensus 194 ~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~ 273 (453)
.+++.+|++|+++|+||.|++++.+++|.+|+++|.+||++||..+.++++.++||+|||+|++|++|+++++.++
T Consensus 3 ~~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~---- 78 (203)
T 3t5x_A 3 HMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKY---- 78 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHT----
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhC----
Confidence 4677899999999999999999999999999999999999999988999999999999999999999999999876
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHh--hcccccHHHHHHHhCCCCC--
Q 012934 274 ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISI--SYSRISLADVAKKLRLDSA-- 349 (453)
Q Consensus 274 ~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~--~YsrIsL~dIa~~L~l~~~-- 349 (453)
.+.+|.+|++||++||+..|++++++|+..|.+||+|.+++++|.+|+|+++|+++. .|++||+++|+.+|++++.
T Consensus 79 ~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~ 158 (203)
T 3t5x_A 79 HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED 158 (203)
T ss_dssp TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 445899999999999999999999999999999999999999999999999999997 5999999999999998642
Q ss_pred CChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccccccCCccccHHHHH
Q 012934 350 NPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNS 399 (453)
Q Consensus 350 ~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~v~s~~ep~~~l~~ 399 (453)
+|.+||||+|++||.+|+|+|+|||++|+++. |+++|||.+.+
T Consensus 159 ~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVl-------sk~~pFP~l~~ 201 (203)
T 3t5x_A 159 VDIDEVQCILANLIYMGHVKGYISHQHQKLVV-------SKQNPFPPLST 201 (203)
T ss_dssp CCHHHHHHHHHHHHHHTSSCEEEETTTTEEEE-------CSSCSSCCGGG
T ss_pred CCHHHHHHHHHHHHHcCceEEEEcccccEEEE-------CCCCCCCCccc
Confidence 57799999999999999998888888877655 56789998753
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-27 Score=247.66 Aligned_cols=280 Identities=18% Similarity=0.128 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC---cCcc
Q 012934 122 VDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP---RFEA 198 (453)
Q Consensus 122 ~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~---~p~~ 198 (453)
+....|++...++..+|-.|++.+|...|....+.+....++....-+.....|.|+..+++..|..+++++. +...
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 3445778888899999999999999999999987766555666666677889999999999999999988753 3444
Q ss_pred CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc--CchHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhh----
Q 012934 199 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV--AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGME---- 272 (453)
Q Consensus 199 ~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~--~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~---- 272 (453)
.++...+.|+.|+|++++.+++|.+|+++|..++. +|. .....+..+++++|.+.+|.+..|.++.+.+...+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~-~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~ 290 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ-TDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNL 290 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccc
Confidence 66788999999999999999999999999999998 554 45667788999999988888888887654443322
Q ss_pred hhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCcc-------HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhC
Q 012934 273 KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRT-------NNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLR 345 (453)
Q Consensus 273 ~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~-------~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~ 345 (453)
+.+++|..|+++|.++++..|..+++.|+..+..|.. -..+..|+.+|+++++++++++|++|++++||..|+
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~ 370 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD 370 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC
Confidence 4678999999999999999999999999887766654 357899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccccccCCccccHHHHHHHHHHHHHHH
Q 012934 346 LDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 409 (453)
Q Consensus 346 l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~v~s~~ep~~~l~~rI~~~l~l~~ 409 (453)
++. ++||..+++||.+|.|.|+|||++|+|.|..+.+ +++.++.|+..|..++++.|
T Consensus 371 l~~----~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~---~~~~l~~W~~~i~~l~~~v~ 427 (445)
T 4b4t_P 371 LTE----SQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN---SSQLLNEWSHNVDELLEHIE 427 (445)
T ss_dssp SCH----HHHHHHHHHHHHHTSSCCEEETTTTEEEC----------------------------
T ss_pred cCH----HHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC---hHHHHHHHHHHHHHHHHHHH
Confidence 987 9999999999999999999999999999998764 56889999999999999887
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.94 E-value=6.9e-25 Score=225.40 Aligned_cols=249 Identities=17% Similarity=0.222 Sum_probs=204.0
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 93 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 93 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+++.|+|.+|.++...+.+.++..++. .+.-.++..-+.++-..+++..++..+.++..++..
T Consensus 108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a------------- 171 (394)
T 3txn_A 108 LYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANA------------- 171 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-------------
Confidence 3457788888888888888888776543 122233455555555567777777777776433210
Q ss_pred HHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHH
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRT-IQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAI 251 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~-~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lI 251 (453)
. ..++.-+..+..++|++++ .+++|.+|+.+|..||++.+...+.....++||++
T Consensus 172 ----------------------i--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv 227 (394)
T 3txn_A 172 ----------------------I--YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML 227 (394)
T ss_dssp ----------------------S--CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----------------------C--CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 0 1467788999999999999 89999999999999998766666788899999999
Q ss_pred hHHHhcCCCCChh-hhhhhh----hhhhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccH-HHHHHHHHHHHHHHH
Q 012934 252 IVRLLLGEIPERT-VFMQKG----MEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLRHNVIRTGL 325 (453)
Q Consensus 252 lv~LL~G~iP~~~-ll~~~~----l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~-~Lv~rLr~~vir~~i 325 (453)
+|.|++|..++.. ++.++. ..+.+.+|.+++.|+..||+..|.++++.|+..|..|+.+ ..+..|+.+++.+++
T Consensus 228 L~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 228 LCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp HHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 9999999877764 333332 1256788999999999999999999999999999999886 458999999999999
Q ss_pred HHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccc
Q 012934 326 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 385 (453)
Q Consensus 326 rki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~ 385 (453)
+++..+|++|++++||..+|++. +++|..|++||.+|.|+|+||+.+|+|.+.++.
T Consensus 308 ~~i~~pYsrIsl~~iA~~l~ls~----~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 308 CRIIEPYSRVQVAHVAESIQLPM----PQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHTTCSEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHhHhhceeeHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 99999999999999999999976 999999999999999999999999999998763
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.8e-21 Score=192.75 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=224.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHH
Q 012934 97 KKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRN 176 (453)
Q Consensus 97 ~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~ 176 (453)
.+++++|..+....+......++. .+.++++...+.++...|+..++...+..+.+.+....++...+.+.+.+.+.
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRV---FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCC---SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 456777766666665554443322 23456677788888889999999999999988777777777888888889999
Q ss_pred HHhcCChHHHHHHHhcCC--cCc-cCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc----CchHhHHHHHHH
Q 012934 177 YLHYNLYDQAEKLRSKAP--RFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV----AALGFRVQCNKW 249 (453)
Q Consensus 177 Yl~~~~~~~a~~li~~~~--~p~-~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~----~~~~~~~~alK~ 249 (453)
|+..++++.|..+..++. .+. ..+...+..++.++|.++..+++|.+|+.+|..|++..+. ........++++
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKY 264 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 999999999999887642 122 2355678999999999999999999999999999985443 224566778888
Q ss_pred HHhHHHhcCCCCChh-hhhhh-----hhhhhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccH-HHHHHHHHHHHH
Q 012934 250 AIIVRLLLGEIPERT-VFMQK-----GMEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLRHNVIR 322 (453)
Q Consensus 250 lIlv~LL~G~iP~~~-ll~~~-----~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~-~Lv~rLr~~vir 322 (453)
.+++.++.+...... .+... ...+....+..++.++..+++..|...+..+...+..|... ..+..+...++.
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (434)
T 4b4t_Q 265 MLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLE 344 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 888877765433221 11111 01135567899999999999999999999999999988875 678999999999
Q ss_pred HHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccccccCCccccHHHHHHHH
Q 012934 323 TGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIA 402 (453)
Q Consensus 323 ~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~v~s~~ep~~~l~~rI~ 402 (453)
++++++..+|++|++.++|..|+++. +++|..|++||.+|.|+|+||+.+|+|.+.+... ..+.++.+-..|.
T Consensus 345 ~~l~~~~~~y~~i~l~~la~~l~~~~----~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~---~~~~~~~~l~~~~ 417 (434)
T 4b4t_Q 345 SNLCKIIEPFECVEISHISKIIGLDT----QQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPN---QDATYDSALELVG 417 (434)
T ss_dssp HHHHHHHSSCSCEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSSCCEEETTTTEEECC--------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHhCcCH----HHHHHHHHHHHhCCCcceecccccCeEeeCCCcc---hhHHHHHHHHHHH
Confidence 99999999999999999999999987 9999999999999999999999999999876643 2333444444444
Q ss_pred HHH
Q 012934 403 FCL 405 (453)
Q Consensus 403 ~~l 405 (453)
.+.
T Consensus 418 ~l~ 420 (434)
T 4b4t_Q 418 QLN 420 (434)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.9e-16 Score=163.35 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=179.7
Q ss_pred hcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHH
Q 012934 140 TGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTI 217 (453)
Q Consensus 140 ~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~ 217 (453)
.|++.+|...+..+..-++... ...-+.-.++|.|+..+++..+...+.++. +...-.+....+|..|.|++++.
T Consensus 144 ~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~ 220 (429)
T 4b4t_R 144 IGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA 220 (429)
T ss_dssp HCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 6777777777776654333211 122344457799999999999999988853 23334456778999999999999
Q ss_pred HhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCCh--hhhhhhhh------hhhhhhHHHHHHHHhcCC
Q 012934 218 QLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPER--TVFMQKGM------EKALRPYFELTNAVRIGD 289 (453)
Q Consensus 218 ~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~~--~ll~~~~l------~~~l~~Y~~L~~Av~~Gd 289 (453)
.++|.+|..+|..++.........-...+.+|.+++.++...-.+. .++..+.+ .+.+.++..++.++-.++
T Consensus 221 ~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~ 300 (429)
T 4b4t_R 221 VRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASD 300 (429)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTC
T ss_pred hChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhcc
Confidence 9999999999999998544455566677888999999886432211 12222221 245567788899998888
Q ss_pred HHHHHH-HHHhcchhhccCccH-HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCC
Q 012934 290 LELFKS-VAEKFSSTFSSDRTN-NLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGA 367 (453)
Q Consensus 290 l~~f~~-~l~~~~~~f~~Dg~~-~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~ 367 (453)
...|-+ .++.+...+..|... ..+..+...+..+++..+..+|++|+++.+|..+|++. +++|..+++||.+|.
T Consensus 301 ~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~----~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 301 YASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSV----AFLDNDLGKFIPNKQ 376 (429)
T ss_dssp HHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCH----HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH----HHHHHHHHHHHHcCC
Confidence 888754 556666655555433 44777788888899999999999999999999999987 999999999999999
Q ss_pred ceeEeeCCCcEEEecccccccCCccccHHHHHHHH
Q 012934 368 IDATVDHANGWMVSKETGDIYSTNEPQLAFNSRIA 402 (453)
Q Consensus 368 I~A~Id~~~G~v~~~~~~~v~s~~ep~~~l~~rI~ 402 (453)
|+|+||+.+|+|.+.++.. ++..++.+-+...
T Consensus 377 l~akID~~~giv~~~~~d~---~~~~y~~~i~~gd 408 (429)
T 4b4t_R 377 LNCVIDRVNGIVETNRPDN---KNAQYHLLVKQGD 408 (429)
T ss_dssp SCEEEETTTTEEEECC-------------------
T ss_pred eEEEEcCCCCEEEECCCCc---hhHHHHHHHHHHH
Confidence 9999999999999987644 3445555444433
No 8
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4e-16 Score=160.59 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=159.4
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHhcCC----cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc--
Q 012934 164 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP----RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-- 237 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~----~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~-- 237 (453)
.+...+...+.+.|+..|..+.|+++++++. ..+..++.-...||+..|.++...++|..++.+...++..++.
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~ 203 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPST 203 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Confidence 4556666788999999999999999999864 2234566778889999999999999999999999998874443
Q ss_pred CchHhHHHHHHHHHhHHHhcC-CCCChh-hhhhhhhh-----hhhhhHHHHHHHHhcCCHHHHHHHHHhcchhh--ccCc
Q 012934 238 AALGFRVQCNKWAIIVRLLLG-EIPERT-VFMQKGME-----KALRPYFELTNAVRIGDLELFKSVAEKFSSTF--SSDR 308 (453)
Q Consensus 238 ~~~~~~~~alK~lIlv~LL~G-~iP~~~-ll~~~~l~-----~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f--~~Dg 308 (453)
..+...+..+++.+++..++| .++.+. ++..|.++ +...+|.++..+|..||+..|.+.++.|...+ ...+
T Consensus 204 ~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~ 283 (393)
T 4b4t_O 204 SITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH 283 (393)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh
Confidence 235566677777777776654 466664 55555432 34567899999999999999999887765543 2222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 309 TNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 309 ~~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
.-.+.+++|...+-..+ ....|.+||+++|+..|+++. +|+|.+|++||.+|.|+|+|||.+|+|.+.+.
T Consensus 284 ~~~l~~kirll~l~~l~--~~~~~~~i~f~~ia~~l~i~~----~evE~lli~aI~~glI~GkIDQv~~~v~v~~~ 353 (393)
T 4b4t_O 284 ESFLRQKICLMTLIETV--FVKNIRMLSFEDISKATHLPK----DNVEHLVMRAISLGLLKGSIDQVNELVTISWV 353 (393)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSSCCCEEHHHHHHHHTCCH----HHHHHHHHHHHHHSCSSSCEETTTTEECC---
T ss_pred HHHHHHHHHHHHHHHHh--ccCCCCcCcHHHHHHHhCcCH----HHHHHHHHHHHHcCCEEEEEcCCCCEEEEEec
Confidence 22344444433322211 113577899999999999976 99999999999999999999999999999873
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.50 E-value=3.6e-13 Score=128.74 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=147.2
Q ss_pred HHHHHHhcCChHHHHHHHhcC--------CcCccCChhh--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc---Cc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKA--------PRFEAHSNQQ--FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV---AA 239 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~--------~~p~~~~~~~--~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~---~~ 239 (453)
-++.++..++|+.|.+++++. .+|+..++++ .+++-|+.|.+.+.+.++.++++.+...++..+. ..
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 357888999999999999873 3555555543 6899999999999999999999999999987776 34
Q ss_pred hHhHHHHHHHHHhHHHhcCCCCChhhhhhhh-----hh--hhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccHHH
Q 012934 240 LGFRVQCNKWAIIVRLLLGEIPERTVFMQKG-----ME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNL 312 (453)
Q Consensus 240 ~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~-----l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~~L 312 (453)
++++.+++.+.+++.|.+|.+|++..+.+.. ++ +.+.++..+.+|+..||..+|-+...+....+ ...+
T Consensus 93 s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~----~~~~ 168 (229)
T 4b0z_A 93 SSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPE----FSYF 168 (229)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGG----GHHH
T ss_pred CccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccch----HHHH
Confidence 6789999999999999999999875443321 11 34567789999999999999999888754321 1246
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHH
Q 012934 313 IVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSK 361 (453)
Q Consensus 313 v~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~ 361 (453)
+..+...+....++.|.++|++||+++++..|+++++ +|++..+.+
T Consensus 169 ~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~---~e~~~f~~~ 214 (229)
T 4b0z_A 169 MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENT---KETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCH---HHHHHHHHH
Confidence 7777788888889999999999999999999999986 899998887
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.24 E-value=7.8e-12 Score=100.95 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 315 RLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 315 rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
.|+..+++++++.+++.|++|+++.+|+.++++. +++|.++++||.+|.|.|+|||++|+|.|.+.
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~----~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPA----AKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCH----HHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCH----HHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 3567889999999999999999999999999997 99999999999999999999999999999754
No 11
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.29 E-value=8.3e-05 Score=71.59 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=150.0
Q ss_pred HhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 173 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~l 173 (453)
+...|+|++|..+..+.+......+.. .-.+.+|.-.+.++...|+..++...+..+........+..+.+...+.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345789999999988887765544221 23355677778888889999999888888877665555555556666677
Q ss_pred HHHHHhc-CChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCch--HhHHHHHH
Q 012934 174 LRNYLHY-NLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL--GFRVQCNK 248 (453)
Q Consensus 174 lr~Yl~~-~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~--~~~~~alK 248 (453)
-..|... |+++.|.....+.- .|..-........+.-.|.++..+++|.+|..+|..++...|.... .....++.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7899995 99999998877642 3433333344566778899999999999999999999997776432 12333444
Q ss_pred HHHhHHHhcCCCCChh-hhhhh-----hhh--hhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccH-HHHHHHHH
Q 012934 249 WAIIVRLLLGEIPERT-VFMQK-----GME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTN-NLIVRLRH 318 (453)
Q Consensus 249 ~lIlv~LL~G~iP~~~-ll~~~-----~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~-~Lv~rLr~ 318 (453)
.+..+-+-+|+...-- .+.+. .+. .....+..+..++..||...|.+++..|.....-|..+ .++.++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 5555555577754321 12111 100 11223557888999999999999999997766666654 34444443
No 12
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.18 E-value=1.1e-05 Score=73.30 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHH
Q 012934 275 LRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVAD 354 (453)
Q Consensus 275 l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~e 354 (453)
-.+|.++..+|..|++..|.+.-+.+. .+. -.+..++|...+-... .....||+++|+..+++++. +|
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~~~~~p-~L~----~~~~~KlrlLtL~sLa----~~~~~lsy~~I~~~l~i~~~---~e 126 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCNATRLP-HLS----PDQILKLKQLTVLTLA----ESNKVLPYDTLMVELDVSNV---RE 126 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHGGGSC-CCC----HHHHHHHHHHHHHHHH----HHCSEEEHHHHHHHHTCCSH---HH
T ss_pred hhHHHHHHHHHhcCCHHHHHHhHHhCc-chH----HHHHHHHHHHHHHHHH----HhCCCcCHHHHHHHhCCCCH---HH
Confidence 357999999999999999998544332 111 2344555544333322 22678999999999999964 99
Q ss_pred HHHHHH-HhHHcCCceeEeeCCCcEEEeccc
Q 012934 355 AESIVS-KAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 355 aE~iva-~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
+|..|. ++|+.|.|+|+|||.++.+...+.
T Consensus 127 vE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 127 LEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp HHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 999999 999999999999999999988863
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=0.00017 Score=60.23 Aligned_cols=152 Identities=12% Similarity=-0.011 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
.....++......+...+++++|.....+.++........ ...+.++...+.++-..++..++...+..+...+...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4445555566666677899999999988888776654322 2334567778888888999999999888888766554
Q ss_pred cCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 012934 161 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 235 (453)
Q Consensus 161 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~ 235 (453)
.+..........+-..|...++++.|...+.+.. .+..-........++..|.++...++|.+|..++..|+..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5555555555667789999999999999877642 22223345667788899999999999999999999998743
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.04 E-value=0.00031 Score=69.57 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
....+.+.+....++..|+|++|..+..+.++.....+. +...+.+++..+.++...|+...+...+..++......
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD---RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 455667777888888999999999998887766554432 23456678888889989999999999888888766554
Q ss_pred cC-ccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 161 HD-ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 161 ~~-~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+ ....+...+.+-.+|...|+++.|.....++- .+..-.....+..++..|.++...++|.+|..+|..|+..++.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 44 44555566677789999999999999877642 2333345566778888999999999999999999999984433
Q ss_pred Cch-HhHHHHHHHHHhHHHhcCCCC
Q 012934 238 AAL-GFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 238 ~~~-~~~~~alK~lIlv~LL~G~iP 261 (453)
... .....++-.+-.+-.-+|+..
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHH
Confidence 221 333444444444334456644
No 15
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.99 E-value=0.00038 Score=61.45 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccC
Q 012934 83 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 162 (453)
Q Consensus 83 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~ 162 (453)
...++......+...+++++|.....+.+......+. +...+.++...+.++...|+..++...+..+...+....+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 3444444555566789999999999888887765532 2334556778888888899999999999888877654442
Q ss_pred -ccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 163 -ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 163 -~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
........+.+-..|+..|+++.|...+.... .+..-.+......++..|.++...++|.+|..+|..|+..+..
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 33555566667789999999999998877642 2222234455666788999999999999999999999985443
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.98 E-value=0.00085 Score=62.89 Aligned_cols=176 Identities=16% Similarity=0.029 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcC--------------------
Q 012934 83 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-------------------- 142 (453)
Q Consensus 83 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~-------------------- 142 (453)
...++......+...+++++|.....+.++.....+.. ...+.++...+.++...++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 34444444555667899999999988888776655322 2234456666777777777
Q ss_pred HHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhh
Q 012934 143 LAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLE 220 (453)
Q Consensus 143 l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~d 220 (453)
..++...+..+...+....+..........+-..|+..|+++.|...+.+.. .+..-.....+..++..|.++...++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 7777777777765554444555555566667789999999999999887642 23333455667788999999999999
Q ss_pred HHHHHHHHHHHHHcCCcC-chHhHHHHHHHHHhHHHhcCCCC
Q 012934 221 YTDAKESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 221 y~~A~~~L~~A~~~~p~~-~~~~~~~alK~lIlv~LL~G~iP 261 (453)
|.+|..+|..++..+|.. .......++..+..+-.-+|+..
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999866553 23333333333333333356543
No 17
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.95 E-value=0.0029 Score=59.16 Aligned_cols=175 Identities=14% Similarity=0.005 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCc
Q 012934 84 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE 163 (453)
Q Consensus 84 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~ 163 (453)
..++......+...+++++|.......++.....+. +...+.+++..+.++...|+..++...+..+........+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc
Confidence 334444455566778999999998888877655432 23335567777888888999999999888888766655555
Q ss_pred cchHHHHHHHHHHHHhcCC--------------------hHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhH
Q 012934 164 LGQETLLNLLLRNYLHYNL--------------------YDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEY 221 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~~~--------------------~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy 221 (453)
.......+.+-..|...|. ++.|.....+.. .+..-........++..|.++...++|
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 5556566677788999999 888888776531 122223456677888999999999999
Q ss_pred HHHHHHHHHHHHcCCcC-chHhHHHHHHHHHhHHHhcCCCC
Q 012934 222 TDAKESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 222 ~~A~~~L~~A~~~~p~~-~~~~~~~alK~lIlv~LL~G~iP 261 (453)
.+|..++..++..+|.. .......++..+..+-...|+..
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999866652 23333334433433334456644
No 18
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.92 E-value=0.0005 Score=67.08 Aligned_cols=174 Identities=12% Similarity=0.000 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELG 165 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~ 165 (453)
+.......+...|++++|..+....++........ ...+.++...+.++...|+..++...+..++.......+...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 33344445566789999999988888776654322 233455778888888899999999988888876655555566
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC-chHh
Q 012934 166 QETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA-ALGF 242 (453)
Q Consensus 166 ~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~-~~~~ 242 (453)
.....+.+-..|+..|+++.|...+.... .+..-........++..|.++...++|.+|..+|..|+..++.. ....
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 66666778889999999999999887642 23333455667888899999999999999999999999866553 3444
Q ss_pred HHHHHHHHHhHHHhcCCCCC
Q 012934 243 RVQCNKWAIIVRLLLGEIPE 262 (453)
Q Consensus 243 ~~~alK~lIlv~LL~G~iP~ 262 (453)
...++..+.-+...+|....
T Consensus 346 ~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHhhHhHH
Confidence 45555555555555676543
No 19
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.92 E-value=0.0011 Score=64.59 Aligned_cols=177 Identities=16% Similarity=0.020 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcC-------------------
Q 012934 82 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD------------------- 142 (453)
Q Consensus 82 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~------------------- 142 (453)
....++......+...|++++|..+..+.++.....+.. ...+.++...+.++...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK---VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 334444445555667799999999988888776655322 2334556777777777777
Q ss_pred -HHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHh
Q 012934 143 -LAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQL 219 (453)
Q Consensus 143 -l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~ 219 (453)
..++...+..+...+....+........+.+-..|...|+++.|...+.+.. .+..-.....+..++..|.++...+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 7888877777776655555555556666677789999999999999887642 3333345567778899999999999
Q ss_pred hHHHHHHHHHHHHHcCCcC-chHhHHHHHHHHHhHHHhcCCCC
Q 012934 220 EYTDAKESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 220 dy~~A~~~L~~A~~~~p~~-~~~~~~~alK~lIlv~LL~G~iP 261 (453)
+|.+|..+|..|+..+|.. .......++..+.-+-...|+..
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 9999999999999866553 22223333333333333356543
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.88 E-value=0.0027 Score=62.50 Aligned_cols=173 Identities=16% Similarity=0.029 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELG 165 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~ 165 (453)
++......+...+++++|.....+.++.....+. +...+.+++..+.++...|+..++...+..+...+....+...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 3333444445567777777777776665544322 2334455677777777788888888777777765544444445
Q ss_pred hHHHHHHHHHHHHhcCC-----------------hHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHH
Q 012934 166 QETLLNLLLRNYLHYNL-----------------YDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKE 226 (453)
Q Consensus 166 ~~~l~n~llr~Yl~~~~-----------------~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~ 226 (453)
.....+.+-..|...++ ++.|.....+.. .+..-........++..|.++...++|.+|..
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55555666678888888 777777665531 12222345566777888888888889999998
Q ss_pred HHHHHHHcCCc-CchHhHHHHHHHHHhHHHhcCCCC
Q 012934 227 SLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 227 ~L~~A~~~~p~-~~~~~~~~alK~lIlv~LL~G~iP 261 (453)
+|..|+..+|. ........++..+..+-+.+|+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 245 HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 88888876554 222222233333333333356543
No 21
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.87 E-value=0.0013 Score=64.93 Aligned_cols=177 Identities=16% Similarity=0.039 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcC-----------------HH
Q 012934 82 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-----------------LA 144 (453)
Q Consensus 82 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~-----------------l~ 144 (453)
....++......+...|++++|.....+.++.....+.. ...+.++...+.++...++ +.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 344444455555667799999999988888776654322 3334556777777777777 77
Q ss_pred HHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHH
Q 012934 145 EIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYT 222 (453)
Q Consensus 145 ~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~ 222 (453)
++...+..+...+....+........+.+-..|+..|+++.|...+.+.. .+...........++..|.++...++|.
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 77777777765554444555555566677789999999999999887642 3333344566778889999999999999
Q ss_pred HHHHHHHHHHHcCCcC-chHhHHHHHHHHHhHHHhcCCCC
Q 012934 223 DAKESLLQAARKAPVA-ALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 223 ~A~~~L~~A~~~~p~~-~~~~~~~alK~lIlv~LL~G~iP 261 (453)
+|..+|..|+..+|.. .......++..+..+-..+|+..
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999866653 22233333333333333456643
No 22
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.80 E-value=0.00097 Score=66.02 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
....+.+.....+.+..|+|++|.....+.++....... +...+.+++..+.++-..++...+...+..++......
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 455667778888889999999999988877766554422 24556678888888888999998888888887655443
Q ss_pred cC-ccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 161 HD-ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 161 ~~-~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+ ....+...+.+-.+|...|+++.|.....++- .+..-.....+..++..|.++..+++|.+|..+|..|+..+..
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 33 33455556667789999999999999777642 1222234466778888999999999999999999999984332
Q ss_pred CchHhHHHHHHHHHhHHHhcCCCC
Q 012934 238 AALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 238 ~~~~~~~~alK~lIlv~LL~G~iP 261 (453)
........++..+-.+-.-+|+..
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHH
Confidence 222222333333333333355543
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.80 E-value=0.0013 Score=63.62 Aligned_cols=203 Identities=11% Similarity=-0.012 Sum_probs=131.7
Q ss_pred HhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 173 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~l 173 (453)
+...++|++|..+..+.+......+.. .-.+.+|.-...++...++..++...+..+........+........+.+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSL---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345689999999988887765544321 23345566677777778888888887877776555444555555555667
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc-hHhHHHHHHHH
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA-LGFRVQCNKWA 250 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~-~~~~~~alK~l 250 (453)
-..|.. ++++.|.....+.. .|..-........++-.|.++...++|.+|..+|..|+..+|... ......++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 778888 99999988777642 333223345567788899999999999999999999998666532 22222344444
Q ss_pred HhHHHhcCCCCChh-hhhh----hhhh--hhhhhHHHHHHHHhcCCHHHHHHHHHhcc
Q 012934 251 IIVRLLLGEIPERT-VFMQ----KGME--KALRPYFELTNAVRIGDLELFKSVAEKFS 301 (453)
Q Consensus 251 Ilv~LL~G~iP~~~-ll~~----~~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~ 301 (453)
..+.+-+|+...-- .+.+ +.+. ........+..++..||...|.+ +.++.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~~ 258 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLR-VCRSP 258 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH-HTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH-HHhCc
Confidence 45555557644321 1111 1110 11223557788889999988888 44443
No 24
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.65 E-value=0.0054 Score=60.47 Aligned_cols=153 Identities=8% Similarity=-0.037 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccC
Q 012934 83 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 162 (453)
Q Consensus 83 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~ 162 (453)
...++..........|++++|.....+.++.....+. ...-.+.++...+.++...|+..++...+..++..+....+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 3344444445555679999999999888887766532 12334566888888999999999999999999877766666
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHhcCC-cCc-cCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 163 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 163 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~p~-~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
........+.+-..|...|+++.|...+.++. ..+ .-.......-++..|.++...++|.+|..+|..|+..++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 66666666778889999999999999877642 211 1221344777889999999999999999999999986554
No 25
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.62 E-value=0.0029 Score=55.64 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=95.3
Q ss_pred HhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 173 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~l 173 (453)
++..|+|++|.+....+ .. +.. ..+.++...+.++-..|+..++...+..+...+....+........+.+
T Consensus 2 ~~~~g~~~~A~~~~~~~----~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL----LA-HPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp -----CHHHHHHHHHHH----HT-STT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHh----cC-ChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46788999997743332 11 111 2244567777788889999999998888887776666666666667777
Q ss_pred HHHHHhcCChHHHHHHHhcCC-cCccC--ChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP-RFEAH--SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~-~p~~~--~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
-..|...|+++.|...+.+.. ..... .+...+..++..|.++...++|.+|..+|..|+..++.
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999877642 21112 23356778889999999999999999999999975443
No 26
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.49 E-value=0.018 Score=56.66 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 164 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~ 164 (453)
.++.-........+++.+|.....+.++.....+.. +.-.+.++...+.++...|+..++...+..++..+....+..
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 333334444556789999999988888776654321 123456678888899899999999999999987776555666
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHhcCC-cCc-cCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 165 GQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 165 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~p~-~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
......+.+-..|...|+++.|...+.++. ..+ .-++.. ..-++..|.++...++|.+|..++..|+..++..
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 666666677789999999999999877642 111 122233 7788899999999999999999999999877763
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.46 E-value=0.0022 Score=53.25 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhh
Q 012934 126 AARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQ 203 (453)
Q Consensus 126 ~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~ 203 (453)
.+.++...+.++-..++..++...+..+...+....+........+.+-..|...++++.|...+.... .+..-++..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 355567777777788999998888888877666556666666666778889999999999999887642 233334556
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 204 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 204 ~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
....++..|.++...++|.+|..++..|+..++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999997544
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.37 E-value=0.02 Score=52.03 Aligned_cols=144 Identities=11% Similarity=0.003 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 012934 78 PLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIA 157 (453)
Q Consensus 78 ~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta 157 (453)
.-|....-++......+...+++++|..+....++. +... +.+++..+.++...++..++...+..+....
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSS-----ADAHAALAVVFQTEMEPKLADEEYRKALASD 101 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345554555566666677889999998887776543 1111 2335666777777899998888877776542
Q ss_pred hhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 158 TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 158 ~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.. .......+...|+..|+++.|...+.+..-.. ........++..|.++...++|.+|..+|..++...|.
T Consensus 102 ~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 102 SR------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred cC------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 11 12234456678899999999999887642200 11234567788999999999999999999999987765
Q ss_pred C
Q 012934 238 A 238 (453)
Q Consensus 238 ~ 238 (453)
.
T Consensus 174 ~ 174 (252)
T 2ho1_A 174 Q 174 (252)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.37 E-value=0.0086 Score=57.04 Aligned_cols=143 Identities=12% Similarity=0.029 Sum_probs=97.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDV-LAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~-l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
+..++..++|++|.....+..+... ...+. ..+..+...+.++-..++..++...+..++.......+..+.+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 5567888999999888776654211 11111 111112223344444567888888888877644444555556666
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCcc-CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEA-HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~-~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+.+-..|...|.++.|.....++- +... ......+..++..|.++..+++|.+|..++..|+..++.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999877642 1111 245677889999999999999999999999999986554
No 30
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.0066 Score=56.62 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc--c
Q 012934 84 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--H 161 (453)
Q Consensus 84 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~--~ 161 (453)
..++......+...+++++|..+....++....... ..+...+.++...+.++...++..++...+..+...+... .
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 333444444556779999999998888876544300 0112234456777888888999999998888887654332 2
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCcc-----------------------------------------
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEA----------------------------------------- 198 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~----------------------------------------- 198 (453)
+........+.+-..|+..|+++.|...+.... .|+.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 233344455667789999999999988766531 0100
Q ss_pred --CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 199 --HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 199 --~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
.........++..|.++...++|.+|..+|..|+...|
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 02356677888999999999999999999999997544
No 31
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.011 Score=54.96 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc--c
Q 012934 84 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--H 161 (453)
Q Consensus 84 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~--~ 161 (453)
..++......+...+++++|..+....+........ ..+...+.+++..+.++...++..++...+..+....... .
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 333344444556678999999998888877554310 1112334456777888888999999988888887554322 2
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC-c-Ccc--CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-R-FEA--HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~-p~~--~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+........+.+-..|...|+++.|...+.+.. . ... -........++..|.++...++|.+|..+|..++..+|.
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233344455667789999999999999877642 1 111 123456778888999999999999999999999975543
No 32
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0061 Score=60.55 Aligned_cols=153 Identities=11% Similarity=-0.019 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
+.+-.+.-|..+ +.+.|++++|.++...+.+....++.. ...+-+......++...+....+......+...+...
T Consensus 53 ~~~~al~~l~~~-y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 53 EQETSILELGQL-YVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHH-HHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 334333333333 356799999999888887776665322 1122223444555566777888877777777766666
Q ss_pred cCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 161 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 161 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+....+.+.+.+-+.|+..|+|+.|..++.... .....+....+.++...|+++...+||.+|..++..|....+.
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 7777778788888999999999999999887642 2223455678999999999999999999999999999875544
No 33
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.27 E-value=0.0046 Score=58.93 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=98.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...++..++|++|.+.....++..... ......+..+++.+.++...++..++...+..++..+....+.++.+...
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345567899999988877665532211 11112223345566666677888888888888876554445666666677
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-cCcc--CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP-RFEA--HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 235 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~-~p~~--~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~ 235 (453)
+.+-..|...|+++.|.....++- ..+. -.....+..++..|.++..+++|.+|..++..|+..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 778889999999999999887642 1111 1222334788899999999999999999999999744
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.26 E-value=0.0084 Score=57.78 Aligned_cols=140 Identities=14% Similarity=0.010 Sum_probs=101.6
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 93 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 93 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+...++|++|..+..+.+......++. ...+.++...+.+++. ++..++...+..+........+........+.
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTP---DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3445689999999988887765544221 1334557777888888 99998888888877655444444444555666
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+-..|...|+|+.|...+.+.. .|+.-.......+++-.|.++...++|.+|..+|..++ ..|.
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 7789999999999999877642 33332233456677788999999999999999999999 7776
No 35
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.26 E-value=0.014 Score=56.99 Aligned_cols=174 Identities=12% Similarity=-0.050 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 164 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~ 164 (453)
-+..+.....+..+++++|.......+...... .....+.++...+.++-..|+...+...+..+...+....+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPG----WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 344455556667899999988877766543211 1112233455566667778999999988888877665555555
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCC--hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCch
Q 012934 165 GQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHS--NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAL 240 (453)
Q Consensus 165 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~--~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~ 240 (453)
+.....+.+-..|+..|.++.|.......- .+.... .......++..|.++...++|.+|..++..++..+|....
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 555556667778999999999998777632 111111 1345566677999999999999999999999987776433
Q ss_pred HhHHHHHHHHHhHHHhcCCCCC
Q 012934 241 GFRVQCNKWAIIVRLLLGEIPE 262 (453)
Q Consensus 241 ~~~~~alK~lIlv~LL~G~iP~ 262 (453)
.....++..+..+.+..|+...
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHH
Confidence 3233444444444444677543
No 36
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.25 E-value=0.015 Score=55.49 Aligned_cols=144 Identities=11% Similarity=-0.018 Sum_probs=100.3
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-GDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~-~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
...+...|++++|..+..+.++......+. ...+.++.-.+.+++.. |+..++...+..++.......+.......
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 334456689999999988888765444221 23355577778888885 99999988888887655433333333445
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCCh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSN-QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~-~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+.+-..|+..|+|+.|.....+.. .|+.... -....+++-.|.++...++|.+|..+|..++...|.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667789999999999999877642 3333211 133456778899999999999999999999986665
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.25 E-value=0.0094 Score=54.46 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc--cCc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--HDE 163 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~--~~~ 163 (453)
+.......+...+++++|.....+.++..+..... .+...+.+++..+.++...|+..++...+..++..+... .+.
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444445567899999999988888776544111 112334457777888888999999999888887654322 223
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHhcCC-c-Cc---------c----------------------------------
Q 012934 164 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-R-FE---------A---------------------------------- 198 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~-p~---------~---------------------------------- 198 (453)
.......+.+-..|...|+++.|...+.... . ++ .
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 3344455667789999999999998776531 0 00 0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 199 HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 199 ~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
.........++.+|.++..+++|.+|..+|..|++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02356677888999999999999999999999986
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.052 Score=48.85 Aligned_cols=143 Identities=10% Similarity=-0.035 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc-Ccc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH-DEL 164 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~-~~~ 164 (453)
.+......++..++|++|..+....++.- .+ +.+++..+.++...++..++...+..+........ +..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 33445556667899999999887776543 11 23466777778888999988888888775443221 221
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCcc--------------------CChhhHHHHHHHHHHHHHHHhhHH
Q 012934 165 GQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEA--------------------HSNQQFCRYLFYLGKIRTIQLEYT 222 (453)
Q Consensus 165 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~--------------------~~~~~~v~Y~YY~G~i~~~~~dy~ 222 (453)
........+-..|...|+++.|...+.+.. .|.. .........++..|.++...++|.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 223445567788999999999998777642 1210 022345667888999999999999
Q ss_pred HHHHHHHHHHHcCCcC
Q 012934 223 DAKESLLQAARKAPVA 238 (453)
Q Consensus 223 ~A~~~L~~A~~~~p~~ 238 (453)
+|..+|..++...|..
T Consensus 157 ~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccc
Confidence 9999999999877764
No 39
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.20 E-value=0.009 Score=56.89 Aligned_cols=141 Identities=9% Similarity=-0.049 Sum_probs=101.8
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc-cCccchHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR-HDELGQETL 169 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~-~~~~~~~~l 169 (453)
.......+++++|.....+.++..... ..+...+.++...+.++...|+..++...+..++...... .+......+
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTG---IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCC---SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 444456789999998877777632211 1123345567778888888999999988888887655433 344455556
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQL-EYTDAKESLLQAARK 234 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~-dy~~A~~~L~~A~~~ 234 (453)
.+.+-..|++.++|+.|...+.+.. .++.-........++..|.++...+ +|.+|..+|..|+.-
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6667789999999999999887642 2222233456788999999999999 589999999999973
No 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.17 E-value=0.0097 Score=52.90 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccC
Q 012934 83 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHD 162 (453)
Q Consensus 83 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~ 162 (453)
+...+.-....++..++|++|.....+.+ +. .+.+|+..+.++...|+..++...+..+.+...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 68 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---- 68 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 33444445556667899999988765553 11 234577778888889999988887777765421
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccC----------ChhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012934 163 ELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAH----------SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 230 (453)
Q Consensus 163 ~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~----------~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~ 230 (453)
. .....+.+-..|+..++++.|...+.+.. .|.+. ........++..|.++...++|.+|..+|..
T Consensus 69 ~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 69 H--LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c--chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 12233445678999999999998877642 34322 2234567789999999999999999999999
Q ss_pred HHHcCCcCchHhHHHHH
Q 012934 231 AARKAPVAALGFRVQCN 247 (453)
Q Consensus 231 A~~~~p~~~~~~~~~al 247 (453)
|+...|....+....++
T Consensus 147 al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 147 ATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp HHTTCCSGGGGHHHHHH
T ss_pred HHHcCcccccchHHHHH
Confidence 99977765444444443
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.16 E-value=0.024 Score=51.61 Aligned_cols=150 Identities=14% Similarity=0.046 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc--cCc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR--HDE 163 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~--~~~ 163 (453)
++......+...+++++|..+....++....... ..+...+.++...+.++...++..++...+..+....... .+.
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344445556778999999998888877554310 1123334557788888888999999998888887654322 112
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHhcCC-cC-cc--CChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 164 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RF-EA--HSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~p-~~--~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
.......+.+-..|+..|+++.|...+.+.. .. .. -.....+..++..|.++...++|.+|..+|..++..+|
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2334445567789999999999999877642 10 00 11345677788899999999999999999999997543
No 42
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.13 E-value=0.0069 Score=57.71 Aligned_cols=144 Identities=10% Similarity=-0.030 Sum_probs=99.5
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH-
Q 012934 89 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE- 167 (453)
Q Consensus 89 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~- 167 (453)
.........+++++|.....+.+....... .. ...+.+++..+.++...++..++...+..++..+....+.....
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~-~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGI--DV-YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CT-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--ch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344455677899999888776654322211 11 12355678888888889999999988888875544333332222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC-c-CccCChhhHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHcC
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAP-R-FEAHSNQQFCRYLFYLGKIRTIQLEYTDA-KESLLQAARKA 235 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~-~-p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A-~~~L~~A~~~~ 235 (453)
.+.+.+-..|+..|+|+.|...+.++. . +..-........++..|.++...++|.+| ..+|..|+.-+
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345567779999999999999887642 1 21122234577889999999999999999 88899998643
No 43
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.07 E-value=0.087 Score=51.15 Aligned_cols=153 Identities=14% Similarity=-0.033 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
+....+.......+...|++++|.......+......... ...+.+++..+.++-..|++.++...+..++..+...
T Consensus 50 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3344444444555667899999999888877665543211 2223345666777777899999998888887665443
Q ss_pred cCc--cchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 161 HDE--LGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 161 ~~~--~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
+.. .......+.+-..|...|+++.|...+.... .+. ......+..++..|+++...|+|.+|..++..+....+
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 333 3344445556678999999999999887642 222 22223566777899999999999999999999987544
Q ss_pred c
Q 012934 237 V 237 (453)
Q Consensus 237 ~ 237 (453)
.
T Consensus 206 ~ 206 (373)
T 1hz4_A 206 N 206 (373)
T ss_dssp T
T ss_pred c
Confidence 3
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.90 E-value=0.063 Score=47.14 Aligned_cols=137 Identities=10% Similarity=-0.049 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCc
Q 012934 84 IYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE 163 (453)
Q Consensus 84 ~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~ 163 (453)
...+......++..+++++|.++....++.- ... +.+++..+.++...++..++...+..+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKN-----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----
Confidence 3344455556677899999988877665431 111 224566777777889988888877777643211
Q ss_pred cchHHHHHHHHHHHHhc-CChHHHHHHHhcCC-cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 164 LGQETLLNLLLRNYLHY-NLYDQAEKLRSKAP-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~-~~~~~a~~li~~~~-~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.......+-..|+.. |+++.|...+.+.. .|. .......++..|.++...++|.+|..+|..++...|..
T Consensus 75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALADPT---YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT---CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 122334566788999 99999999877642 121 12235567889999999999999999999999876653
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.90 E-value=0.018 Score=51.68 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q 012934 79 LPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 158 (453)
Q Consensus 79 ~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~ 158 (453)
.|......+......++..+++++|..+..+.++ .+... +.+++..+.++...++..++...+..+.....
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKED-----AIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp ------------------------CCTTHHHHHT----TCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3344444455555566777888888777666544 11111 23356666677778888887777766654321
Q ss_pred hccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 159 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 159 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
........+-..|...|+++.|...+.+.. .|.. ...++..|.++...++|.+|..+|..++...|
T Consensus 89 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 89 ------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred ------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112333456677888999999888777642 2321 23567788899999999999999999998766
Q ss_pred cC
Q 012934 237 VA 238 (453)
Q Consensus 237 ~~ 238 (453)
..
T Consensus 157 ~~ 158 (243)
T 2q7f_A 157 ND 158 (243)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.076 Score=47.72 Aligned_cols=140 Identities=13% Similarity=0.030 Sum_probs=96.2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh----------
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL---------- 159 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~---------- 159 (453)
....+...+++++|.......++.-..... .+...+.+++..+.++...++..++...+..+.+....
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDAVEQGREMRA--DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 344456678999999998888776443311 12223455777788888888888888777776652100
Q ss_pred ----------ccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 012934 160 ----------RHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES 227 (453)
Q Consensus 160 ----------~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~ 227 (453)
.............+-..|+..|+++.|...+.+.. .|. ....++..|.++...++|.+|..+
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 00111222344456678999999999999887642 232 246788899999999999999999
Q ss_pred HHHHHHcCCc
Q 012934 228 LLQAARKAPV 237 (453)
Q Consensus 228 L~~A~~~~p~ 237 (453)
|..++...|.
T Consensus 196 ~~~al~~~~~ 205 (258)
T 3uq3_A 196 CNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCHH
Confidence 9999986665
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.82 E-value=0.042 Score=53.05 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..++...|..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3456677888888888888888888888766653
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.79 E-value=0.036 Score=49.94 Aligned_cols=136 Identities=10% Similarity=-0.050 Sum_probs=96.0
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
......++..|+|++|..+..+.++.-.. ... .++++.+.++...++..++...+..+.... + ...
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p-~~~ 76 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNN---QDS-----VTAYNCGVCADNIKKYKEAADYFDIAIKKN-----Y-NLA 76 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----C-SHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCC---CCc-----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----c-chH
Confidence 34455667889999999887777654220 111 235667888888999988887777665322 1 122
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC--cCccC-ChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAH-SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~-~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.....+-..|...|+++.|...+++.. .|.+. .....+..++..|.++...++|.+|..+|..|+...|.
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 334456678999999999999887742 44431 23345578999999999999999999999999986564
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.76 E-value=0.062 Score=48.66 Aligned_cols=129 Identities=14% Similarity=0.024 Sum_probs=90.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....+...+++++|.+....+++. +... +.+++..+.++...++..++...+..+.. ..........
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 143 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALAS----DSRN-----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRV 143 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CcCc-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHH
Confidence 334455678999998887777643 1111 22356667777778999888887777654 1112223334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+-..|+..|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4556678999999999999887642 232 2456788999999999999999999999986654
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.75 E-value=0.037 Score=51.20 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=95.5
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
.-....++..|+|++|......+++. . ... ...+.+++..+.++...++..++...+..+.+... .+... .
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~---~-p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~--~ 89 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTY---G-RTH--EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRV--P 89 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGG---C-SCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTH--H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh---C-CCC--cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchh--H
Confidence 44455667889999998876665432 1 111 12244578888888889999999888887765432 11111 1
Q ss_pred HHHHHHHHHHHh--------cCChHHHHHHHhcC--CcCccCChhhH-----------HHHHHHHHHHHHHHhhHHHHHH
Q 012934 168 TLLNLLLRNYLH--------YNLYDQAEKLRSKA--PRFEAHSNQQF-----------CRYLFYLGKIRTIQLEYTDAKE 226 (453)
Q Consensus 168 ~l~n~llr~Yl~--------~~~~~~a~~li~~~--~~p~~~~~~~~-----------v~Y~YY~G~i~~~~~dy~~A~~ 226 (453)
.....+-..|+. .++++.|...+.+. .+|.+...... ...+|..|.++...++|.+|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 122234457777 99999999988764 25654222222 2223889999999999999999
Q ss_pred HHHHHHHcCCcC
Q 012934 227 SLLQAARKAPVA 238 (453)
Q Consensus 227 ~L~~A~~~~p~~ 238 (453)
+|..++...|.+
T Consensus 170 ~~~~~l~~~p~~ 181 (261)
T 3qky_A 170 TYEAVFDAYPDT 181 (261)
T ss_dssp HHHHHHHHCTTS
T ss_pred HHHHHHHHCCCC
Confidence 999999977763
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.70 E-value=0.034 Score=47.07 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc
Q 012934 82 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 161 (453)
Q Consensus 82 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~ 161 (453)
...-.+......+...+++++|.......++. +.. .+.+++..+.++...++..++...+..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 73 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAF-----DVDVALHLGIAYVKTGAVDRGTELLERSLADAP--- 73 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Ccc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 33444445555666778999987775444321 111 123456667777778888888877777654321
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
. .......+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 74 -~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 74 -D--NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp -T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -C--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 1 12233445668889999999998877642 232 23567888999999999999999999999876643
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.09 Score=49.18 Aligned_cols=129 Identities=17% Similarity=0.075 Sum_probs=80.0
Q ss_pred hcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHH
Q 012934 95 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLL 174 (453)
Q Consensus 95 ~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ll 174 (453)
...+++++|.......++.... ...++++.+.++...++..++...+..+...... .....+.+-
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~ 200 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKG---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVG 200 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTT---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHH
Confidence 3456666666655544432111 0122445566666677777777766666543211 123445566
Q ss_pred HHHHhcCChHHHHHHHhcCC-----cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 175 RNYLHYNLYDQAEKLRSKAP-----RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~-----~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..|+..|+++.|...+.... .+...+.......++..|.++...++|.+|..+|..++...|..
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 78888999998888776531 11222224456677888999999999999999999998866653
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.51 E-value=0.12 Score=45.22 Aligned_cols=127 Identities=9% Similarity=-0.078 Sum_probs=89.3
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-GDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~-~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
...+...+++++|.......++. +... +.+++..+.++... ++..++...+..+.. ..........
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 115 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSI----KPDS-----AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIA 115 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHh----CCCC-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHH
Confidence 33445678999998887766543 1111 12355667777778 999888887777765 1112222334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
...+-..|...|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556778999999999998877642 232 245678899999999999999999999998766
No 54
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.50 E-value=0.11 Score=40.98 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=84.3
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...+...+++++|.......++. +... ..+++..+.++...++..++...+..+..... .. ....
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~ 72 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL----DPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----RS--AEAW 72 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TC--HHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc----CCcc-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC----Cc--hHHH
Confidence 33445678999998887666543 1111 12345556666667888888877776654321 11 2233
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
..+-..|...++++.|...+.... .|.. ...++..|.++...+++.+|..+|..++...|
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 456678999999999998877642 2321 34566789999999999999999999997655
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.49 E-value=0.075 Score=44.86 Aligned_cols=127 Identities=10% Similarity=-0.067 Sum_probs=88.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....+...+++++|......+++. +... +.+++..+.++...++..++...+..+...... . ...
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~ 112 (186)
T 3as5_A 48 LGIAYVKTGAVDRGTELLERSLAD----APDN-----VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI----N--FNV 112 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----C--HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH----h--HHH
Confidence 334445678999998887776644 1111 123555666666788888888877777654221 1 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+-..|...|+++.|...+.+.. .|. ....++..|.++...++|.+|..++..++...|.
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPN------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3456678899999999999877642 222 2456788999999999999999999999986665
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.40 E-value=0.17 Score=46.57 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=90.3
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHh--------hcCHHHHHHHHHHHHHHhhhccCcc
Q 012934 93 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL--------TGDLAEIRGNLLALHRIATLRHDEL 164 (453)
Q Consensus 93 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~--------~~~l~~~r~~l~~~~rta~~~~~~~ 164 (453)
.++..|+|++|......+++.--. . .....+++..+.++.. .++..++...+..+.+..... . .
T Consensus 61 ~~~~~~~~~~A~~~~~~~l~~~p~----~--~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~-~ 132 (261)
T 3qky_A 61 AYYQNKEYLLAASEYERFIQIYQI----D--PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-E-L 132 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT----C--TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-T-T
T ss_pred HHHHhCcHHHHHHHHHHHHHHCCC----C--chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-h-h
Confidence 345678999998887766553211 1 0112346777788877 778888887777776433211 1 1
Q ss_pred chHHH-------------HHHHHHHHHhcCChHHHHHHHhcC--CcCccCChhhHHHHHHHHHHHHHHH----------h
Q 012934 165 GQETL-------------LNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQ----------L 219 (453)
Q Consensus 165 ~~~~l-------------~n~llr~Yl~~~~~~~a~~li~~~--~~p~~~~~~~~v~Y~YY~G~i~~~~----------~ 219 (453)
..... ...+-..|++.|+++.|...+++. ..|++ ......+|..|.++... +
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT---PWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhcccchhhcccc
Confidence 11000 023456899999999999987764 24542 23456788999999876 9
Q ss_pred hHHHHHHHHHHHHHcCCcCc
Q 012934 220 EYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 220 dy~~A~~~L~~A~~~~p~~~ 239 (453)
+|.+|..+|..++...|.+.
T Consensus 210 ~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 210 RYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCT
T ss_pred hHHHHHHHHHHHHHHCCCCh
Confidence 99999999999999888643
No 57
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.33 E-value=0.24 Score=44.91 Aligned_cols=160 Identities=10% Similarity=-0.028 Sum_probs=96.2
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc--chHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL--GQET 168 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~--~~~~ 168 (453)
...++..|+|++|......+++.-. .+ .....+++..+.++...++..++...+..+.+... .+... ..+.
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p----~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~ 83 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYP----FG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT----TS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHH
Confidence 4456778999999888777765311 11 11223467777788889999988877777664332 22211 1111
Q ss_pred HHHHHH--------------HHHHhcCChHHHHHHHhcC--CcCccCCh-----------hhHHHHHHHHHHHHHHHhhH
Q 012934 169 LLNLLL--------------RNYLHYNLYDQAEKLRSKA--PRFEAHSN-----------QQFCRYLFYLGKIRTIQLEY 221 (453)
Q Consensus 169 l~n~ll--------------r~Yl~~~~~~~a~~li~~~--~~p~~~~~-----------~~~v~Y~YY~G~i~~~~~dy 221 (453)
+..+.+ ..+...+.++.|...+.+. .+|++... .....+.+..|.++..+++|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 222211 1223467888888877663 35654221 12234558899999999999
Q ss_pred HHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCC
Q 012934 222 TDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGE 259 (453)
Q Consensus 222 ~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~ 259 (453)
.+|...|..++...|.+. ....++..+..+-.-+|+
T Consensus 164 ~~A~~~~~~~l~~~p~~~--~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQ--ATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHHHHHHHHHHSTTSH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCcCCC--ccHHHHHHHHHHHHHcCC
Confidence 999999999999888643 233444444443333444
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.28 E-value=0.19 Score=44.78 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=90.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....+...+++++|..+...+++. +.. .+.+++..+.++...++..++...+..+...... . ...
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~----~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~ 127 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALEL----DSS-----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME----N--GDL 127 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC----S--HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----C--HHH
Confidence 344445678999998887766543 111 1233566677777789999888888777654321 1 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...+-..|+..|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3456678999999999999887642 232 23467889999999999999999999999876643
No 59
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.26 E-value=0.35 Score=46.13 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=58.7
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHH
Q 012934 89 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 168 (453)
Q Consensus 89 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~ 168 (453)
.....++..|++++|..+....++. +.. .+.+++..+.++...|+..++...+..+...... ...
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~----~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~ 133 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPK-----HMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQT 133 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHH
Confidence 3445566789999998887776542 111 1234566677777788888888777777643211 122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc
Q 012934 169 LLNLLLRNYLHYNLYDQAEKLRSK 192 (453)
Q Consensus 169 l~n~llr~Yl~~~~~~~a~~li~~ 192 (453)
....+-..|...|+++.|...+.+
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566788889999998887765
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.26 E-value=0.14 Score=44.14 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=85.4
Q ss_pred HHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHH
Q 012934 92 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 171 (453)
Q Consensus 92 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n 171 (453)
..+...|+|++|.++..+.++. +... +.+|+..+.++...++..++...+..+..... .. .....
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~----~~--~~~~~ 77 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKA----DPNN-----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT----TS--AEAYY 77 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CC--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----hh--HHHHH
Confidence 3345679999999887776643 2221 23356677777788888887776666643221 11 12223
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.+-..+...++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 34567788899999888776642 232 23456788999999999999999999999866653
No 61
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.22 E-value=0.095 Score=50.23 Aligned_cols=116 Identities=12% Similarity=-0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHH
Q 012934 131 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYL 208 (453)
Q Consensus 131 ~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~ 208 (453)
.....++...|+..++...+..+.+.. .......+....+..+...+.++.|..++.... .|. ....+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~~~~ 203 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLL 203 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cHHHH
Confidence 334444555666666666555554332 111112222223334445566676666655431 232 23355
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCC
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP 261 (453)
+-.|.++...|+|.+|..+|..|+..-|.... ++..++.+...+|+.+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-----~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPE-----TLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCCH
Confidence 56777777777777777777777765554321 2333444444466644
No 62
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.06 E-value=0.39 Score=46.10 Aligned_cols=93 Identities=15% Similarity=-0.017 Sum_probs=61.9
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHH
Q 012934 136 CYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGK 213 (453)
Q Consensus 136 ~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~ 213 (453)
++...++..++...+..+.... .........+.+-..|...|+++.|...+.+.. .|. ....++..|.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~ 255 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQN----GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGA 255 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHS----CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhC----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 3334455666666555554432 111122334456678899999999999887642 232 2346788999
Q ss_pred HHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 214 IRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 214 i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
++...++|.+|..+|..|+...|..
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999877754
No 63
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.04 E-value=0.31 Score=38.37 Aligned_cols=100 Identities=9% Similarity=-0.107 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhH
Q 012934 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQF 204 (453)
Q Consensus 127 ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~ 204 (453)
+.+++..+.++...++...+...+..+...... . ......+-..|+..++++.|...+.+.. .|. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----N--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------Y 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----C--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------C
Confidence 344566666666678888887777666543211 1 2233445678899999999998877642 232 2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..++...|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 4567889999999999999999999999876653
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.04 E-value=0.11 Score=49.03 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred HHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHH
Q 012934 92 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 171 (453)
Q Consensus 92 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n 171 (453)
..+...+++++|.++...+++.- ... ..+++..+.++...|+..++...+..+.... ... .....
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~ 192 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC----VWD-----AELRELRAECFIKEGEPRKAISDLKAASKLK----SDN--TEAFY 192 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----SCC--HHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC----CCc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC--HHHHH
Confidence 34456677888777766665431 111 1224455555555666666665555554321 111 12233
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCccCC------hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhH
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFEAHS------NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFR 243 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~~~~------~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~ 243 (453)
.+-..|...|+++.|...+.+.. .|+... ....+.-..-.|.++...++|.+|..+|..++...|.. ....
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 271 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV-AEYT 271 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHH
Confidence 44456666677777766665532 232211 11112223445666666777777777777777655552 2233
Q ss_pred HHHHHHHHhHHHhcCCCCChh-hhhhhh-hh-hhhhhHHHHHHHH-hcCCHHHHHHHHHhcchhhccCcc
Q 012934 244 VQCNKWAIIVRLLLGEIPERT-VFMQKG-ME-KALRPYFELTNAV-RIGDLELFKSVAEKFSSTFSSDRT 309 (453)
Q Consensus 244 ~~alK~lIlv~LL~G~iP~~~-ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~f~~~l~~~~~~f~~Dg~ 309 (453)
..++..+.-+-.-+|+....- .+.+-. .. .....|..+..+. ..|+ ++++++.++.....++.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence 333333333333344433221 111100 00 1223445555554 5566 44455555555544444
No 65
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.03 E-value=0.13 Score=40.82 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCcc-CChhhH
Q 012934 128 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEA-HSNQQF 204 (453)
Q Consensus 128 k~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~-~~~~~~ 204 (453)
.+++..+.++-..++..++...+..+...... .......+-..|+..++++.|...+.+.. .|.. ......
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 34556666666678888888877777643211 12233445678899999999998877642 2322 122233
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...++..|.++...++|.+|..+|..++...|.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 677888999999999999999999999986663
No 66
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.12 Score=48.34 Aligned_cols=134 Identities=13% Similarity=-0.013 Sum_probs=92.4
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCc---cch
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE---LGQ 166 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~---~~~ 166 (453)
....+...+++++|......+++. +... +.+++..+.++...++..++...+..+........+. ...
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI----APED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh----CCCC-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 334455678999988776655432 2221 2335666777777899999988888887654322221 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 167 ETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 167 ~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
......+-..|...|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 3344556678999999999999887642 232 24567889999999999999999999999876653
No 67
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.97 E-value=1.1 Score=43.88 Aligned_cols=187 Identities=13% Similarity=0.017 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccc
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELG 165 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~ 165 (453)
.+......++..|++++|..+...+++. +... +.+|+..+.++...|+..++...+..+......
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 92 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG----DPDN-----YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD------ 92 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------
Confidence 3344455566789999999887776643 1111 334666777777789998888877777654211
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccC---Ch------hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 012934 166 QETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAH---SN------QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 234 (453)
Q Consensus 166 ~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~---~~------~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~ 234 (453)
.....+.+-..|...|+++.|...+.+.. .|... .. .....-++-.|.++...++|.+|..+|..++..
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12334556778999999999999887642 23211 00 011122455688899999999999999999987
Q ss_pred CCcCchHhHHHHHHHHHhHHHhcCCCCChh-hhhhhh-hh-hhhhhHHHHHHHH-hcCCHHH
Q 012934 235 APVAALGFRVQCNKWAIIVRLLLGEIPERT-VFMQKG-ME-KALRPYFELTNAV-RIGDLEL 292 (453)
Q Consensus 235 ~p~~~~~~~~~alK~lIlv~LL~G~iP~~~-ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~ 292 (453)
.|.... ++..+.-+-.-.|+....- .+.+-. .. .....+..++.+. ..|+...
T Consensus 173 ~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 173 CVWDAE-----LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp CTTCHH-----HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCChH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 775322 2222222223357765432 222110 00 1233455666655 5677543
No 68
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.97 E-value=1.1 Score=42.02 Aligned_cols=95 Identities=7% Similarity=-0.071 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHH
Q 012934 132 YYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLF 209 (453)
Q Consensus 132 ~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~Y 209 (453)
..+.++...++..++...+..+...... .......+-..|...|+++.|...+.+.. .|. ....++
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~ 192 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSD------NTEAFY 192 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC------CHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 3344555688888888877777654321 12334556678999999999999887642 232 235678
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 210 YLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 210 Y~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..|.++...++|.+|..+|..++...|..
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 89999999999999999999999977763
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.93 E-value=0.14 Score=43.68 Aligned_cols=101 Identities=13% Similarity=0.003 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhH
Q 012934 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQF 204 (453)
Q Consensus 127 ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~ 204 (453)
+..++....++-..++..++...+..++..... ...+.+.+-..|+..++++.|...+.+.. .|. .
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------Y 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------C
Confidence 344566666666788888888877777654321 12333445678999999999998877642 232 3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
...++..|.++...++|.+|..+|..++...|...
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 56788999999999999999999999999877744
No 70
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.90 E-value=0.18 Score=43.06 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+|+.|.++...|+|.+|..+|..|+...|.
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45788999999999999999999999987775
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.87 E-value=0.4 Score=42.94 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=84.8
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhh----ch---hhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc
Q 012934 89 LVLIFLIDKKRYNEAKACSSASIARLKNM----NR---RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 161 (453)
Q Consensus 89 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~----~~---r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~ 161 (453)
-....++..|+|++|..+..+.++.-... .. .....+...+++-.+.++...|+..++...+..++.....
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-- 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--
Confidence 34556778899999998877776431100 00 0000111122222777788888888888777776643211
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCCh-----------------------------hhHHHHHHH
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSN-----------------------------QQFCRYLFY 210 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~-----------------------------~~~v~Y~YY 210 (453)
. ......+-..|+..|+++.|.....+.. .|.+... ...---+|.
T Consensus 87 --~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 87 --N--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp --C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred --C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 1 1122334567788899998888776631 2322100 000012356
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 211 LGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 211 ~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.|..+...++|.+|..+|..|++..|.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 788888888999999999999987775
No 72
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.79 E-value=0.055 Score=45.06 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..|++.-|..
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999999999977763
No 73
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.79 E-value=0.33 Score=46.32 Aligned_cols=134 Identities=11% Similarity=0.001 Sum_probs=76.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH--
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE-- 167 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~-- 167 (453)
....+...|++++|..+....++. +... +.+++..+.++...|+..++...+..+..............
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL----KPDN-----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344455678999998887766543 1111 22355666777778888888877777764322111111000
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 168 --------TLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 168 --------~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+ .+..++..|+++.|...+.+.. .|... ....++..|.++...++|.+|..+|..++...|.
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 175 GAGGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhhcccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 0000 1222236677777777666531 22211 3456667788888888888888888888876655
No 74
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.79 E-value=0.22 Score=42.39 Aligned_cols=103 Identities=26% Similarity=0.248 Sum_probs=65.4
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchh---------hhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRR---------TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r---------~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
.-..++..|+|++|.......+..+...... .++...+.+|+..+
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-------------------------- 70 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS-------------------------- 70 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHH--------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 3445567899999999888887765543110 00122222233333
Q ss_pred cCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 161 HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 161 ~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..|++.+.++.|.....+.. -| .....+|..|.++...++|.+|..+|..|+...|..
T Consensus 71 --------------~~~~~~~~~~~A~~~~~~al~~~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 71 --------------QCYLNIGDLHEAEETSSEVLKREE------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --------------HHHHHHTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --------------HHHHhcCcHHHHHHHHHHHHhcCC------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 34555566665555444321 12 234578899999999999999999999999977753
No 75
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.77 E-value=0.16 Score=51.43 Aligned_cols=133 Identities=14% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....+...+++++|.......++.- .... .+++..+.++...|+..++...+..+...... . ..+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~--~~~ 380 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN----PENV-----YPYIQLACLLYKQGKFTESEAFFNETKLKFPT----L--PEV 380 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCS-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--THH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC----CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--hHH
Confidence 3344456788999988877776531 1111 12444555555667777666666655543211 1 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQ----------LEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~----------~dy~~A~~~L~~A~~~~p~ 237 (453)
.+.+-..|...|+++.|...+.+.. .|........+..++..|.++... ++|.+|..+|..++...|.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 2334556677777777777666531 233222233344455666666666 7777777777777765554
No 76
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.22 Score=49.77 Aligned_cols=102 Identities=11% Similarity=-0.057 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHh---cCChHHHHHHHhcCC--cCccCChhhH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLH---YNLYDQAEKLRSKAP--RFEAHSNQQF 204 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~---~~~~~~a~~li~~~~--~p~~~~~~~~ 204 (453)
++..+.++...|+..++...+..+...................+-..|+. .|+++.|...+.+.. .|. .
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~ 448 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR------S 448 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc------c
Confidence 34444445555566655555555544332221111112223334455666 666666666555431 121 1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...++..|.++...++|.+|..+|..|+...|.
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 234556666666666666666666666665554
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.69 E-value=1.2 Score=40.40 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=89.6
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 93 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 93 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+...|++++|.......++ .. -+. ...+.+|+..+.++...++..++...+..+...... .......
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~-~~-~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~ 113 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFS-KV-NAT----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQ 113 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-TS-CTT----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHh-cc-Cch----hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHH
Confidence 45567899999988777765 11 111 123455777888888899999988888777653321 1123445
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~-~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-..|+..|+++.|...+.+.. .. ......++..|......++|.+|..+|..++...|..
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIRPT-----TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCCSS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 6678999999999999888753 21 1223456778844445669999999999999977764
No 78
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.61 E-value=0.44 Score=37.07 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHH
Q 012934 128 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFC 205 (453)
Q Consensus 128 k~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v 205 (453)
.+++..+.++...++..++...+..+.+.... .....+.+-..|...++++.|...+.+.. .|. ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 77 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NA 77 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cH
Confidence 44666677777788888888877777654211 12234456678899999999998877642 222 13
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..++..|.++...++|.+|..+|..++...|..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 456788999999999999999999999876653
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.59 E-value=0.23 Score=41.47 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+|..|.++...++|.+|..+|..++...|.
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 35688999999999999999999999987665
No 80
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.59 E-value=0.32 Score=38.73 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..++...|..
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 3467888999999999999999999999876653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.50 E-value=0.33 Score=43.46 Aligned_cols=136 Identities=16% Similarity=0.022 Sum_probs=88.3
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH-H
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE-T 168 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~-~ 168 (453)
....+...+++++|.......++ .+.. .+.+|+..+.++...++..++...+..+.........-...+ .
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~----~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 118 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIK----KNYN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI 118 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----TTCS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHH----hCcc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 44555677999999888766652 2222 234467778888889999888887777765332111000011 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhH-------------------------
Q 012934 169 LLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEY------------------------- 221 (453)
Q Consensus 169 l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy------------------------- 221 (453)
....+=..|+..|+++.|.....+.. .|. ......++..|.++..+++.
T Consensus 119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (228)
T 4i17_A 119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 23345568899999999999887642 232 11355667777777766666
Q ss_pred --HHHHHHHHHHHHcCCcC
Q 012934 222 --TDAKESLLQAARKAPVA 238 (453)
Q Consensus 222 --~~A~~~L~~A~~~~p~~ 238 (453)
.+|..+|..|++..|..
T Consensus 195 ~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhcCCCC
Confidence 88999999999877763
No 82
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.48 E-value=0.47 Score=40.74 Aligned_cols=123 Identities=15% Similarity=0.007 Sum_probs=81.4
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 93 FLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 93 ~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+...+++++|.......+..- ... +.++...+.++...++...+...+..+..... .. ......
T Consensus 48 ~~~~~~~~~~a~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~----~~--~~~~~~ 112 (184)
T 3vtx_A 48 TYMDIGLPNDAIESLKKFVVLD----TTS-----AEAYYILGSANFMIDEKQAAIDALQRAIALNT----VY--ADAYYK 112 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----CCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC----chh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cc--hHHHHH
Confidence 3456789999987766554321 111 12244455556667777777766665543221 11 122334
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
+-..|.+.|+++.|.....+.. .|. ....++..|.++...++|.+|..+|..|++.-|
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcch------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 5568899999999998877642 232 245678899999999999999999999998544
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.46 E-value=0.33 Score=49.98 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=81.1
Q ss_pred HHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHH
Q 012934 92 IFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLN 171 (453)
Q Consensus 92 ~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n 171 (453)
..+...|++++|.++....++. +... +.+|.....++...|+.+++...+..+..... . .....+
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~ 479 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARL----FQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ----Y--DPLLLN 479 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----TTTC-----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC----C--CHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----Cccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--ChHHHH
Confidence 3345678999998887766532 1111 12244455556667777777776666654321 1 123345
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCc-cCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFE-AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~-~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+...|.+.|+++.|..++.+.. .|+ ...+...+..++..|.++...|+|.+|...|..++...|.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 56677778888888888777642 222 1233334566777788888888888888888888876664
No 84
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.46 E-value=0.36 Score=43.54 Aligned_cols=129 Identities=19% Similarity=0.069 Sum_probs=84.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhh-----------cCHHHHHHHHHHHHHHhh
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT-----------GDLAEIRGNLLALHRIAT 158 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~-----------~~l~~~r~~l~~~~rta~ 158 (453)
....+...|++++|.....+.++. +... +.+++..+.++... |+..++...+..+.....
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~----~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVAR----TPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCc-----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 334445678999988776665542 2221 12245555566566 777777776666654321
Q ss_pred hccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 159 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 159 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.. ......+-..|...|+++.|...+++..-.. +....++..|.++...++|.+|..+|..++...|..
T Consensus 116 ----~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 116 ----RY--APLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp ----TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred ----cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 11 1222345567899999999998777642111 234567889999999999999999999999876653
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.43 E-value=0.29 Score=42.36 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..+|..|.++...|+|.+|..+|..|+..+|..
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 467899999999999999999999999988764
No 86
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.42 E-value=0.58 Score=42.40 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...++..|.++...++|.+|..+|..|+...|.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 566677788888888888888888888775554
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.38 E-value=0.13 Score=44.18 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=78.7
Q ss_pred hcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHH
Q 012934 95 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLL 174 (453)
Q Consensus 95 ~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ll 174 (453)
++.+++++|.......++. +... +.+|+..+.++...++..++...+..+...... + ......+-
T Consensus 21 ~~~~~~~~A~~~~~~al~~----~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la 85 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA----NPQN-----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--N----AELYAALA 85 (177)
T ss_dssp C-----CCCCHHHHHHHHH----CCSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--C----HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh----CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHH
Confidence 4567777776665554432 1111 123566677777788888888877777643321 1 12223344
Q ss_pred HH-HHhcCCh--HHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 175 RN-YLHYNLY--DQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 175 r~-Yl~~~~~--~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.. |+..+.+ +.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 45 7888998 99988777642 232 23567889999999999999999999999987764
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.35 E-value=0.15 Score=46.63 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=89.7
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....++..|++++|.......++. +....+ +++..+.++...++..++...+..+.. . . .+.......
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~-~~~~~~~~~ 76 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-----IYNRRAVCYYELAKYDLAQKDIETYFS-K-V-NATKAKSAD 76 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-----THHHHHHHHHHTTCHHHHHHHHHHHHT-T-S-CTTTCCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHh-c-c-CchhHHHHH
Confidence 345566789999998887776542 112111 245556666678898888888777765 2 1 222333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...+-..|...|+++.|...+.+.. .|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 4456678899999999999877642 2322 2467789999999999999999999999865543
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.19 E-value=0.26 Score=44.83 Aligned_cols=126 Identities=15% Similarity=0.026 Sum_probs=89.1
Q ss_pred cccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHH
Q 012934 96 DKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLR 175 (453)
Q Consensus 96 d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr 175 (453)
..+++++|......+++... . .+.-.+.+++..+.++-..|+..++...+..+..... . .......+-.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~--~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRA-L----TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----D--MPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSC-C----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----C--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccc-c----cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC----C--cHHHHHHHHH
Confidence 34788888887776654311 0 1122344577778888889999988887777765321 1 1223344567
Q ss_pred HHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 176 NYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 176 ~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.|...|+++.|...+.+.. .|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 8899999999999887642 3322 3567889999999999999999999999877764
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.10 E-value=0.45 Score=41.85 Aligned_cols=103 Identities=17% Similarity=-0.003 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccch----------HHHHHHHHHHHHhcCChHHHHHHHhcCC--cCc
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQ----------ETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFE 197 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~----------~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~ 197 (453)
++..+.++-..++..++...+..+.+......+.... ..+...+-..|+..++++.|...+.+.. .|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence 3344444445677777777776666433221111111 2344456678999999999998777642 22
Q ss_pred cCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 198 AHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 198 ~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.....+|..|.++...++|.+|..+|..|+...|..
T Consensus 120 -----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 120 -----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp -----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred -----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 235678899999999999999999999999876653
No 91
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.04 E-value=0.27 Score=48.53 Aligned_cols=200 Identities=10% Similarity=0.028 Sum_probs=114.4
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...+...+++++|..+...+++. +... +.+++..+.++...|+..++...+..+.+... ......
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~ 214 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEV----CVWD-----AELRELRAECFIKEGEPRKAISDLKAASKLKN------DNTEAF 214 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC------SCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHH
Confidence 34456678999998887776642 1111 12245556666667777777776666654321 112344
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhh------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHh
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQ------FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGF 242 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~------~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~ 242 (453)
+.+-..|...|+++.|...+.... .|+...... .+.-..-.|.++...++|.+|..+|..++...|. ....
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~ 293 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEY 293 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHH
Confidence 556677888888888888777642 343321111 1122344588888888888888888888886665 3334
Q ss_pred HHHHHHHHHhHHHhcCCCCChhhhhhhhh--h-hhhhhHHHHHHHH-hcCCHHHHHHHHHhcchhhccCcc
Q 012934 243 RVQCNKWAIIVRLLLGEIPERTVFMQKGM--E-KALRPYFELTNAV-RIGDLELFKSVAEKFSSTFSSDRT 309 (453)
Q Consensus 243 ~~~alK~lIlv~LL~G~iP~~~ll~~~~l--~-~~l~~Y~~L~~Av-~~Gdl~~f~~~l~~~~~~f~~Dg~ 309 (453)
...++..+..+-.-+|+....--+-+..+ . .....|..+..++ ..|+. ++++..++..+..++.
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCcc
Confidence 44555555555555666554321111111 1 1234566666665 55764 4455555554444443
No 92
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.04 E-value=1.4 Score=42.48 Aligned_cols=61 Identities=18% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+.+-..|...|+++.|...+.+.. .|.. ..-++..|.++...++|.+|..+|..++...|.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 344556667777777766655431 2221 123456677777777777777777777766654
No 93
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.02 E-value=0.44 Score=48.04 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=91.4
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....+...+++++|.......++.- .. .+.+|+..+.++...++..++...+..+.+.... .. ..
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~----~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~--~~ 346 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLN----PE-----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE----NV--YP 346 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHC----TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CS--HH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccC----CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CH--HH
Confidence 3444667899999998877765431 11 1233667777777889999988888877654321 11 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+-..|+..|+++.|...+.+.. .|.. ...++..|.++...++|.+|..+|..|+...|.
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 3446678899999999999887642 3432 235667799999999999999999999988876
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.00 E-value=0.38 Score=49.50 Aligned_cols=195 Identities=8% Similarity=-0.067 Sum_probs=119.0
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...+...|++++|.++....++. +.... .+|.....++...|+..++...+..+..... . .....
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~ 444 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTM----DPQFG-----PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ----G--THLPY 444 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT----T--CSHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh----CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----c--chHHH
Confidence 34456779999999988777652 22211 1245556666778999888887777654321 1 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc--CchHhHHHH
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV--AALGFRVQC 246 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~--~~~~~~~~a 246 (453)
+.+...|.+.|+++.|..++.+.. .|.+ ...++..|.++...|+|.+|..+|..++...|. ........+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 556788999999999999888752 3331 134678899999999999999999999988543 112222344
Q ss_pred HHHHHhHHHhcCCCCChh-hhhhhh-hh-hhhhhHHHHHHHH-hcCCHHHHHHHHHhcchhhccCcc
Q 012934 247 NKWAIIVRLLLGEIPERT-VFMQKG-ME-KALRPYFELTNAV-RIGDLELFKSVAEKFSSTFSSDRT 309 (453)
Q Consensus 247 lK~lIlv~LL~G~iP~~~-ll~~~~-l~-~~l~~Y~~L~~Av-~~Gdl~~f~~~l~~~~~~f~~Dg~ 309 (453)
+..+.-+-.-.|+...-- .+.+-. .. .....|..+..++ +.|+.. ++.+.++..+..++.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG---LAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCC
Confidence 444444444566654432 222110 11 1335677777776 668754 444444444443433
No 95
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.17 Score=49.06 Aligned_cols=181 Identities=12% Similarity=0.059 Sum_probs=95.3
Q ss_pred HHHHhcCChHHHHHHHhcCC---------cCccC-Ch----hhH--H-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--
Q 012934 175 RNYLHYNLYDQAEKLRSKAP---------RFEAH-SN----QQF--C-RYLFYLGKIRTIQLEYTDAKESLLQAARKA-- 235 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~---------~p~~~-~~----~~~--v-~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~-- 235 (453)
+.-+..++|+.|.+++.+.. .|... ++ ++. + .-+-.++++.+..+|+.+-.+|+.+--.-.
T Consensus 12 ~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d 91 (274)
T 4b4t_T 12 SIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS 91 (274)
T ss_dssp -------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 44456677888888777631 12211 11 111 1 245567777777788877666666654322
Q ss_pred Cc---CchHhHHHHHHHHHhHHHhcCCCCChhh----hhh--hhhh--hhhhhHHHHHHHHhcCCHHHHHHHHHhcchhh
Q 012934 236 PV---AALGFRVQCNKWAIIVRLLLGEIPERTV----FMQ--KGME--KALRPYFELTNAVRIGDLELFKSVAEKFSSTF 304 (453)
Q Consensus 236 p~---~~~~~~~~alK~lIlv~LL~G~iP~~~l----l~~--~~l~--~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f 304 (453)
+. ..++++-+++-|.++.-|..|.+++... +.. +.++ +.+..=..+-+++..||..+|=+...+-...
T Consensus 92 ~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p- 170 (274)
T 4b4t_T 92 NNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN- 170 (274)
T ss_dssp TSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC-
T ss_pred hhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-
Confidence 11 2356777777777776555677765421 110 0011 1223335788899999988887666543210
Q ss_pred ccCccH-HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHH
Q 012934 305 SSDRTN-NLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSK 361 (453)
Q Consensus 305 ~~Dg~~-~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~ 361 (453)
...| .++..+...+....++.+.++|.+||+++++..|+++++ +|+...+..
T Consensus 171 --~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~---~e~~~F~~~ 223 (274)
T 4b4t_T 171 --ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNE---KETEKFALE 223 (274)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSH---HHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCH---HHHHHHHHH
Confidence 1123 355666666666778889999999999999999999986 777766643
No 96
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.96 E-value=0.24 Score=40.18 Aligned_cols=98 Identities=15% Similarity=-0.009 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHH
Q 012934 128 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFC 205 (453)
Q Consensus 128 k~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v 205 (453)
..++..+.++-..++...+...+..+...... .......+-..|+..++++.|...+.+.. .|. ..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~ 77 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SV 77 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hH
Confidence 34556666666788888888777777654321 12233445668899999999998777642 232 34
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..++..|.++...++|.+|..+|..|+...|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 57888999999999999999999999987665
No 97
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.88 E-value=1.3 Score=40.88 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..++...|..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4566778888888888888888888888766653
No 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.88 E-value=1 Score=37.24 Aligned_cols=130 Identities=12% Similarity=-0.066 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL 164 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~ 164 (453)
..+......++..+++++|.......++.- ... +.+++..+.++...++..++...+..+.+.... .
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----PSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----Y 80 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----c
Confidence 334444555667889999988877666531 111 234566677777788888888777777654211 1
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 165 GQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 165 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
......+-..|...|+++.|...+.+.. .|. ...+...+-.|..+...++|.+|...+..+..
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 1223345567888899998888777642 232 22333445555557778888888888777654
No 99
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.88 E-value=0.75 Score=36.68 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHH
Q 012934 131 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYL 208 (453)
Q Consensus 131 ~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~ 208 (453)
+..+.++-..++..++...+..+..... .+.. .......+-..|+..|+++.|...+.+.. .|.+ ......+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHH
Confidence 4445555567888888877776654321 1111 11222345568899999999998877642 3432 1234567
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
|..|.++...++|.+|..+|..++...|..
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 889999999999999999999999987764
No 100
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.85 E-value=1.1 Score=44.61 Aligned_cols=130 Identities=11% Similarity=0.017 Sum_probs=93.0
Q ss_pred cccCHHHHHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 96 DKKRYNEAKACSSASIARLKNMN-----RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 96 d~~~~~~A~~~~~~lv~~l~~~~-----~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
..+++++|..+....++.....- ....+.-.+.+++..+.++...|+..++...+..+.... .. ....
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~---~~~~ 273 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PR---VNSY 273 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----CC---HHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cc---HHHH
Confidence 37999999999888877532221 111234445567777888888899988888777766432 11 3344
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..+-..|...|.++.|...+.+.. .|.. ...++..|.++...++|.+|..+|..++...|..
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 556778999999999988777632 2322 2356789999999999999999999999877764
No 101
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.85 E-value=0.79 Score=42.46 Aligned_cols=136 Identities=9% Similarity=-0.084 Sum_probs=84.3
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
+.....++..+++++|..+...+++. +.. .+.+++..+.++...++..++...+..+..... . ..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~--~~ 89 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQA----APE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDP----K--DI 89 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T--CH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----C--CH
Confidence 34455667789999998887776653 111 123356667777778998888887777764321 1 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChh--------hHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHcCC
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQ--------QFCRYLFYLGK-IRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~--------~~v~Y~YY~G~-i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
.....+-..|...|+++.|...+.+.. .|...... +.......+|. ++...++|.+|..+|..++...|
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 233445678899999999998877632 23221110 01111122255 67789999999999999998777
Q ss_pred cC
Q 012934 237 VA 238 (453)
Q Consensus 237 ~~ 238 (453)
..
T Consensus 170 ~~ 171 (327)
T 3cv0_A 170 ND 171 (327)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 102
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.64 E-value=0.85 Score=44.16 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
+..|.++...++|.+|..+|..++...|
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445555555555555555555554333
No 103
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.5 Score=38.02 Aligned_cols=96 Identities=16% Similarity=-0.004 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHH
Q 012934 129 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCR 206 (453)
Q Consensus 129 ~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~ 206 (453)
.|+-.+.++-..++..++...+..+.+.... .......+-..|++.++++.|...+.+.. .|. ...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 73 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVR 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHH
Confidence 3444455555678888888777777654321 12333445568899999999998777642 232 245
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 207 YLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 207 Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
.++..|.++...++|.+|..+|..++...|
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 688899999999999999999999998763
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.60 E-value=0.7 Score=36.13 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHH
Q 012934 129 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCR 206 (453)
Q Consensus 129 ~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~ 206 (453)
+|+..+.++...++..++...+..+..... .. ....+.+...|...++++.|...+.+.. .|. ...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP----RS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC----cc--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chH
Confidence 355556666667888888777766654321 11 2233445678889999999998877642 222 234
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 207 YLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 207 Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.++..|.++...++|.+|..+|..++...|.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999999986554
No 105
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.59 E-value=0.89 Score=34.91 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHH
Q 012934 129 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCR 206 (453)
Q Consensus 129 ~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~ 206 (453)
.++..+.++...++..++...+..+...... .......+-..|+..++++.|...+.+.. .|. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 73 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGK 73 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHH
Confidence 3555566666678888888777776543211 12233445567889999999998777642 232 245
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 207 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 207 Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.++..|.++...++|.+|..+|..++...|..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 67889999999999999999999999866653
No 106
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.56 E-value=0.72 Score=47.08 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhch------hhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNR------RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 158 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~------r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~ 158 (453)
..+......++..++|.+|..+..+.++....... .....+.+.+|+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n-------------------------- 322 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN-------------------------- 322 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH--------------------------
Confidence 34445556667789999999988888775443311 0111122222222
Q ss_pred hccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 159 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 159 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
+-..|++.++|+.|....+++- .|. ....+|..|.++...++|.+|..+|..|+...|
T Consensus 323 --------------la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 323 --------------LAMCYLKLREYTKAVECCDKALGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp --------------HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred --------------HHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3345566666666665554421 121 245678888999889999999999999988666
Q ss_pred c
Q 012934 237 V 237 (453)
Q Consensus 237 ~ 237 (453)
.
T Consensus 383 ~ 383 (457)
T 1kt0_A 383 Q 383 (457)
T ss_dssp -
T ss_pred C
Confidence 5
No 107
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.55 E-value=0.44 Score=38.76 Aligned_cols=98 Identities=16% Similarity=-0.016 Sum_probs=65.9
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHH
Q 012934 131 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYL 208 (453)
Q Consensus 131 ~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~ 208 (453)
+..+.++...++..++...+..+.+... +..........+-..|+..++++.|...+.+.. .|. ....+
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~ 102 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DVKAL 102 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CHHHH
Confidence 3334444456777777666665543211 111113334455678899999999988776632 232 25677
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+..|.++...++|.+|..+|..++...|.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999999987775
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.46 E-value=1.1 Score=37.12 Aligned_cols=97 Identities=9% Similarity=-0.043 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y 207 (453)
++..+.++-..++...+...+..+...... . ......+-..|...++++.|...+.+.. .|. ....
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 83 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS----N--AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKG 83 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHH
Confidence 455555666678888888877777653211 1 2233445568899999999998877642 232 2346
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 208 LFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 208 ~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
++..|.++...++|.+|..+|..++...|..
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 7889999999999999999999999877753
No 109
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.26 E-value=0.94 Score=49.57 Aligned_cols=128 Identities=13% Similarity=-0.004 Sum_probs=91.4
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
.-..+.+.|++++|.++..+.++. +.. .+.+|+.++.++...|+..+|...+..+++... .. .-.
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l----~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----~~--~~a 79 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV----FPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----TF--ADA 79 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC--HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHH
Confidence 344556789999999887766543 222 123467777888889999998887777764321 11 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.+.+-..|...|+++.|....++.. -|+ ....++.+|.++..+++|.+|..+|..|++..|..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3345567889999999998777642 232 34567889999999999999999999999977763
No 110
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.08 E-value=1 Score=44.72 Aligned_cols=59 Identities=19% Similarity=0.036 Sum_probs=44.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+-..|++.++++.|....++.- .| .....+|..|.++...++|.+|..+|..|+...|.
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDP------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4456677777777776665531 22 23567789999999999999999999999997775
No 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.00 E-value=0.63 Score=38.01 Aligned_cols=95 Identities=12% Similarity=-0.091 Sum_probs=57.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
....++..|++++|.......++. +.. .+.+|+..+.++...|+..++...+..+.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~----~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------- 80 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK----EPE-----REEAWRSLGLTQAENEKDGLAIIALNHARML------------- 80 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 344556778888887776555432 111 1223555566666666665555444433211
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
-| .....++.+|.++...++|.+|..+|..++...|.
T Consensus 81 -------------------------~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 81 -------------------------DP------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -------------------------CT------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -------------------------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 12 12346688999999999999999999999976554
No 112
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.99 E-value=0.6 Score=42.04 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=84.8
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
......++..|++++|..+..+.++ .+... +.+++..+.++...|+..++...+..+...... +...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a-- 75 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALK----ENPQD-----PEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGG-- 75 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHH--
Confidence 3445556778999999887655542 22221 233667777888889998888777766543211 1111
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 012934 168 TLLNLLLRNYLHY-----------NLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 234 (453)
Q Consensus 168 ~l~n~llr~Yl~~-----------~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~ 234 (453)
...+-..|... |+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..|+..
T Consensus 76 --~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 76 --YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp --HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 12233455666 89999988777642 232 3356778999999999999999999999984
Q ss_pred C
Q 012934 235 A 235 (453)
Q Consensus 235 ~ 235 (453)
.
T Consensus 148 ~ 148 (217)
T 2pl2_A 148 E 148 (217)
T ss_dssp C
T ss_pred c
Confidence 3
No 113
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.97 E-value=0.83 Score=46.78 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHhhhccCccc
Q 012934 95 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELT---------GDLAEIRGNLLALHRIATLRHDELG 165 (453)
Q Consensus 95 ~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~---------~~l~~~r~~l~~~~rta~~~~~~~~ 165 (453)
...+++++|..+..++++. +.. +.+++.++.++... ++..++...+..+..... .+...
T Consensus 148 ~~~g~~~~A~~~~~~al~~----~p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 215 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTH----CKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRS 215 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTT----CCC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHH
T ss_pred HHcCCHHHHHHHHHHHHhh----CCC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHH
Confidence 3446666666554444321 111 13455666666666 777777776666654321 11122
Q ss_pred hHHHHHHHHHHHHhc----CChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 166 QETLLNLLLRNYLHY----NLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 166 ~~~l~n~llr~Yl~~----~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...+.+.+++.|+.. ++++.|...+.+.. .|. .......++..|.++...++|.+|..+|..|+...|..
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 223344444444444 55888888777642 231 12456788999999999999999999999999876653
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.93 E-value=0.85 Score=37.49 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=67.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCcc-CChhhHHHHHH
Q 012934 133 YSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEA-HSNQQFCRYLF 209 (453)
Q Consensus 133 ~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~-~~~~~~v~Y~Y 209 (453)
...++-..++..++...+..++... +.. ....+.+-..|++.|+++.|.....+.. .|+. ......+.-++
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-----PSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3344445677888777776665432 111 2233445568999999999998777642 2432 23344566778
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 210 YLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 210 Y~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
-.|.++...++|.+|.++|..|+...|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8999999999999999999999985553
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.91 E-value=1.1 Score=43.46 Aligned_cols=107 Identities=10% Similarity=-0.059 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc---------chHHHHHHHHHHHHhcCChHHHHHHHhcCC--
Q 012934 126 AARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL---------GQETLLNLLLRNYLHYNLYDQAEKLRSKAP-- 194 (453)
Q Consensus 126 ~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~---------~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-- 194 (453)
.+.+++..+.++-..++..++...+..++.......+.. ....+.+.+-..|++.++++.|....++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566667777778888888887777765432211000 012334456678999999999998877642
Q ss_pred cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 195 RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 195 ~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 226 ~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 226 DSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 232 34577899999999999999999999999977764
No 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.83 E-value=0.7 Score=47.32 Aligned_cols=130 Identities=14% Similarity=0.002 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcccCH-HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCc
Q 012934 85 YCYLLVLIFLIDKKRY-NEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDE 163 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~-~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~ 163 (453)
.++......+...++| ++|.++..+.++. +... +.+|+..+.++...++..++...+..++... +
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 168 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----K 168 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----C
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----C
Confidence 3344555566778999 9998887766543 2221 2346677778888899999888777776432 2
Q ss_pred cchHHHHHHHHHHHHhc---------CChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHH--------hhHHHH
Q 012934 164 LGQETLLNLLLRNYLHY---------NLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQ--------LEYTDA 224 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~~---------~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~--------~dy~~A 224 (453)
. ......+-..|... ++++.|...+.+.. .|. ....++.+|.++... ++|.+|
T Consensus 169 ~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 169 N--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp C--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 2 23344566688888 99999998877642 232 234678899999999 999999
Q ss_pred HHHHHHHHHcCC
Q 012934 225 KESLLQAARKAP 236 (453)
Q Consensus 225 ~~~L~~A~~~~p 236 (453)
..+|..|+...|
T Consensus 241 ~~~~~~al~~~p 252 (474)
T 4abn_A 241 LSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHHhCC
Confidence 999999998666
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.81 E-value=0.91 Score=47.15 Aligned_cols=130 Identities=11% Similarity=-0.128 Sum_probs=91.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
......+...+++++|.+...+.++. +... +.+++.++.++...|+..++...+..+...... . .
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~--~ 91 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLAL----HPGH-----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE----H--P 91 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT----STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----C--H
Confidence 33344455679999998886666542 2221 234667777888899999988887777653211 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHcCCcC
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQ---LEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~---~dy~~A~~~L~~A~~~~p~~ 238 (453)
...+.+-..|...|+++.|...+.+.. .|+ ....++..|.++... +++.+|..+|..++...|..
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 233456678999999999999887642 232 234667899999999 99999999999999988763
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.10 E-value=0.21 Score=38.31 Aligned_cols=97 Identities=7% Similarity=-0.089 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHH
Q 012934 131 FYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYL 208 (453)
Q Consensus 131 ~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~ 208 (453)
+..+.++...++..++...+..+..... .. ......+-..|+..++++.|...+.+.. .|. ......+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~ 79 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP----EE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDVW 79 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc----CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHHH
Confidence 3444555557777777776666654321 11 1122345567888899999988777642 232 1134567
Q ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHcCCc
Q 012934 209 FYLGKIRTIQ-LEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 209 YY~G~i~~~~-~dy~~A~~~L~~A~~~~p~ 237 (453)
+..|.++... ++|.+|.++|..++...|.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 8889999999 9999999999999887665
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.66 E-value=5 Score=38.78 Aligned_cols=137 Identities=9% Similarity=-0.084 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhc------hhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMN------RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 158 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~------~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~ 158 (453)
..+......++..++|++|..+..+.++...... ......+.+.+|+..+.|+-..++..++...+..+++...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344455556778999999999888886644331 1124455567788889999999999998888877765431
Q ss_pred hccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Q 012934 159 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAK-ESLLQAAR 233 (453)
Q Consensus 159 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~-~~L~~A~~ 233 (453)
. . ......+-..|+..++++.|...+.+.. .|.+ ...++.+|.++...+++.+|. ..+..+|.
T Consensus 228 ~----~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N----N--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----c--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1223445568999999999999887642 3322 245678999999999999995 46666665
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.56 E-value=0.59 Score=45.98 Aligned_cols=125 Identities=14% Similarity=0.024 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y 207 (453)
.++.+.+++..|+.+++...+....-. ....+.+-...++.++|++.|+++.|.+.+++.. .|+.....+.+..
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 357778888899999888777665311 1112344455567789999999999999998753 2222233566777
Q ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCChh
Q 012934 208 LFYLGKIRTIQL--EYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERT 264 (453)
Q Consensus 208 ~YY~G~i~~~~~--dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~~~ 264 (453)
..-.|.+.+.++ +|.+|+..|+.+..++|...+.. ..+. +.+-+|++|+..
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~--lLln----~~~~~g~~~eAe 231 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL--GLLN----LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH--HHHH----HHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH--HHHH----HHHHcCCHHHHH
Confidence 777788888887 99999999999988766411111 1111 566679988753
No 121
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.52 E-value=1.1 Score=37.99 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y 207 (453)
+|.++.++...++..++...+..+...... . ......+-.+|...|+++.|.....+.. .|. ....
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~ 101 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQER----D--PKAHRFLGLLYELEENTDKAVECYRRSVELNPT------QKDL 101 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------CHHH
Confidence 556666666677777777766666543211 1 1122334456777777777777665531 222 2234
Q ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHHcCCcC
Q 012934 208 LFYLGKIRTIQLEYTDAKE-SLLQAARKAPVA 238 (453)
Q Consensus 208 ~YY~G~i~~~~~dy~~A~~-~L~~A~~~~p~~ 238 (453)
++..|.++...++|.+|.. ++..|++..|..
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 5667777777777766554 356777766653
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.50 E-value=0.41 Score=38.42 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..+-..|+..|+++.|...+.+.. .|+. ...++..|.++...++|.+|..+|..++...|..
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 445568888999999988777642 3432 4567889999999999999999999999876653
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.47 E-value=0.96 Score=46.99 Aligned_cols=120 Identities=12% Similarity=-0.036 Sum_probs=73.0
Q ss_pred cCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHH
Q 012934 98 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNY 177 (453)
Q Consensus 98 ~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Y 177 (453)
+++++|.++..+.++. +.. .+.+|+..+.++...++..++...+..+..... . .....+.+-..|
T Consensus 3 g~~~~A~~~~~~al~~----~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~lg~~~ 67 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP----G--HPEAVARLGRVR 67 (568)
T ss_dssp ----------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST----T--CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHH
Confidence 5677776665555432 111 123356667777778899888887777764321 1 122334456788
Q ss_pred HhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 178 LHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 178 l~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...|+++.|...+.+.. .|+ ....++..|.++...++|.+|..+|..|+...|..
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999877642 232 24567889999999999999999999999977753
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.43 E-value=2.6 Score=37.82 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHhcC--CcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~--~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+-+.|++.|+++.|....++. .+|.+ .....-++..|.++...|++.+|...|..+....|.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 345789999999998877764 24542 233456789999999999999999999999986665
No 125
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.38 E-value=0.37 Score=37.87 Aligned_cols=60 Identities=18% Similarity=0.068 Sum_probs=47.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+-..|+..|+++.|...+.+.. .|.. ...++.+|.++...++|.+|..+|..|+..+|.
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 34567889999999988777642 3332 237788999999999999999999999986654
No 126
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.05 E-value=5 Score=41.68 Aligned_cols=136 Identities=8% Similarity=-0.070 Sum_probs=92.5
Q ss_pred HhcccCHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--hhhccCccchHHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRI--ATLRHDELGQETLL 170 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~-~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~ 170 (453)
+-.+|+|++|..+..+.++.... +...-.+ .+.++.-.+.++...|+..+|......++.. ...-.+....+...
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY--VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44679999999998888766443 2222222 2344555666677789999988877777633 33334445566667
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC------cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP------RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~------~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
|.|-..|...|+|+.|..+..++- +-+.- .....-.-.++..++.++.|++|...|..|-+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999888642 21111 22333336777888889999999998888754
No 127
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.04 E-value=1.5 Score=33.62 Aligned_cols=82 Identities=15% Similarity=-0.005 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC-chHhHHHHHH
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA-ALGFRVQCNK 248 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~-~~~~~~~alK 248 (453)
.+-..|+..++++.|.....+.. .|. ....++..|.++...++|.+|..+|..|+...|.. .......++.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34467889999999988777642 232 24567899999999999999999999999877764 2333333443
Q ss_pred HHHhHHHhcCC
Q 012934 249 WAIIVRLLLGE 259 (453)
Q Consensus 249 ~lIlv~LL~G~ 259 (453)
.+-.+..-+|.
T Consensus 83 ~~~~~~~~~~~ 93 (111)
T 2l6j_A 83 RLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 33333333454
No 128
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=91.78 E-value=1.3 Score=44.30 Aligned_cols=129 Identities=8% Similarity=-0.089 Sum_probs=87.2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHhhhccCccchHH
Q 012934 90 VLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGD-LAEIRGNLLALHRIATLRHDELGQET 168 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~-l~~~r~~l~~~~rta~~~~~~~~~~~ 168 (453)
....+...+++++|..+..++++. +... +.+|++...++...++ +.++...+..+..... +. ..
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l----~P~~-----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P----~~--~~ 167 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIEL----NAAN-----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----KN--YQ 167 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT----TC--HH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHh----CccC-----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC----CC--HH
Confidence 334456678999999887776542 2221 2236667777777886 8888776666654321 11 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 169 LLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 169 l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
..+.+-..|...|.++.|...+++.. .|. ...-+++.|.++...++|.+|..+|..|+..-|...
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 22334456778899999988877642 232 234568899999999999999999999999777643
No 129
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.64 E-value=0.79 Score=35.03 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHhcCChHHHHHHHhcCC--cCccCChhhHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 175 RNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCR-YLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~-Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
..|+..++++.|...+.+.. .|.. .. .++..|.++...++|.+|..+|..|+...|...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 46788899999988777642 3322 23 778899999999999999999999999877644
No 130
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.64 E-value=0.65 Score=39.34 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-+.|++.++|+.|...+++.. .|. ....++..|.++...++|.+|..+|..|++..|..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 4578999999999999888742 232 34578899999999999999999999999977754
No 131
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.64 E-value=1.3 Score=32.74 Aligned_cols=62 Identities=24% Similarity=0.179 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..+-..|+..++++.|.....+.. .|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345567888999999988777642 232 23567889999999999999999999999876653
No 132
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.27 E-value=4.3 Score=37.00 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=84.0
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhhccCc
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL----TGDLAEIRGNLLALHRIATLRHDE 163 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~----~~~l~~~r~~l~~~~rta~~~~~~ 163 (453)
......+...+++++|..+..+.++ .+. +.+++....++.. .++..++...+..+... .+
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~----~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~- 73 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD----LKE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY- 73 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----TTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CCC-------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC-
Confidence 3444455667899999988777765 111 1235666777777 78888877766665432 11
Q ss_pred cchHHHHHHHHHHHHh----cCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHc
Q 012934 164 LGQETLLNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 234 (453)
Q Consensus 164 ~~~~~l~n~llr~Yl~----~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~~ 234 (453)
....+.+-..|.. .++++.|...+.+..-. ....-++.+|.++.. .+++.+|..+|..|+..
T Consensus 74 ---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 74 ---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 2223345567888 99999999887764211 134567889999998 99999999999999974
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.18 E-value=0.56 Score=50.58 Aligned_cols=127 Identities=15% Similarity=0.026 Sum_probs=82.6
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHH
Q 012934 89 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 168 (453)
Q Consensus 89 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~ 168 (453)
.....++..|+|++|.....++++. +.. .+.+|++.+.++...++.++|...+..+++..... . .
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~----~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~--~ 502 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAER----VGW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----L--A 502 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----HCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----S--H
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc----Ccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----h--H
Confidence 3344556678888888776665542 111 12346777888888899998888877776543211 1 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 169 LLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 169 l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+.+-..|.+.|+++. ....++.. .|. ....++.+|.++...++|.+|..+|..|+...|.
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDG------VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 12234456778888877 55554421 222 2345688999999999999999999999875554
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=90.74 E-value=3.3 Score=36.00 Aligned_cols=93 Identities=14% Similarity=0.027 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y 207 (453)
++..+.++...++..++...+..+. +. .....+.+-..|+..|+++.|...+.+.. .|. ....
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~ 73 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVA 73 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHH
Confidence 4455555556778777766554442 11 12344556678899999999998777642 232 2456
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 208 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 208 ~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
++..|.++...++|.+|..+|..|+...|.
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 788999999999999999999999987775
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.68 E-value=1.7 Score=41.02 Aligned_cols=96 Identities=16% Similarity=-0.025 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y 207 (453)
++..+..+...|+..++...+..+..... . ...+.+.+-..|+..|+++.|.....+.. .| .....
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~ 74 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP----L--VAVYYTNRALCYLKMQQPEQALADCRRALELDG------QSVKA 74 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT------TCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----c--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHH
Confidence 44445555567888888877777664321 1 12333445578999999999999887642 23 23457
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 208 LFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 208 ~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+|..|.++...++|.+|..+|..|+...|.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 788999999999999999999999987765
No 136
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=90.40 E-value=1.1 Score=35.36 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+-..|+..|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..|+...|.
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3445578899999999998777642 232 2446788999999999999999999999986664
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.28 E-value=6.1 Score=34.83 Aligned_cols=116 Identities=10% Similarity=-0.072 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhch-h--hhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc
Q 012934 85 YCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNR-R--TVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 161 (453)
Q Consensus 85 ~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~-r--~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~ 161 (453)
+.+.-.-..++..|+|++|..+..+.+...-.+.. . ..+...+.+|...+.+....|+..++....-.++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 34444555667789999999999988876554210 0 112223335677777777777777665544443321
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYL----FYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~----YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.| +..+. . .+...-+ |-.|..+...++|.+|..+|..|+.-.|.
T Consensus 87 --------~n-------------------~~~e~----~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 87 --------FN-------------------RRGEL----N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp --------HH-------------------HHCCT----T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------hh-------------------ccccC----C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 00 00111 1 1334445 88999999999999999999999997776
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.13 E-value=9.7 Score=40.76 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhh---hhhhhHHHH
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGME---KALRPYFEL 281 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~---~~l~~Y~~L 281 (453)
...+|+.|.++...++|.+|..+|..|+...|..... +..+-.+-.-+|+......+.+ .++ .....|..+
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-----~~~lg~~~~~~g~~~~~~~~~~-al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-----KLALAATAELAGNTDEHKFYQT-VWSTNDGVISAAFGL 540 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-----HHHHHHHHHHHTCCCTTCHHHH-HHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHcCChHHHHHHHH-HHHhCCchHHHHHHH
Confidence 4567788888888888888888888888866654322 1222222333577665223322 111 123456677
Q ss_pred HHHH-hcCCHHHHHHHHHhcchhhccCccH
Q 012934 282 TNAV-RIGDLELFKSVAEKFSSTFSSDRTN 310 (453)
Q Consensus 282 ~~Av-~~Gdl~~f~~~l~~~~~~f~~Dg~~ 310 (453)
..+. +.|+ ++++++.++.....+..+
T Consensus 541 g~~~~~~g~---~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 541 ARARSAEGD---RVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHTTC---HHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHcCC---HHHHHHHHHhhcccCccc
Confidence 7765 5566 456777777766666654
No 139
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=90.02 E-value=13 Score=34.94 Aligned_cols=97 Identities=12% Similarity=-0.009 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcC-Cc-CccCChhhHHH
Q 012934 129 LYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PR-FEAHSNQQFCR 206 (453)
Q Consensus 129 ~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~-p~~~~~~~~v~ 206 (453)
+|+.+..+.+..|+..+++..+-.+++.. .+. .. .+.+.+...+.+.|.++.|..++.+. .. |..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~-~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------- 167 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE---DID-PT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-------- 167 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS---SSC-TH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc---ccC-cc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------
Confidence 46677777788899999988777776421 111 11 13344456677889999999988774 22 322
Q ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHHcCCcC
Q 012934 207 YLFYLGKIRTI---QLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 207 Y~YY~G~i~~~---~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+..|.|...+. .+++.+|...|..|+...|..
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 22234444443 699999999999999877753
No 140
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.81 E-value=6 Score=38.70 Aligned_cols=193 Identities=10% Similarity=-0.028 Sum_probs=104.6
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh--ccCcc
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMN-RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL--RHDEL 164 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~-~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~--~~~~~ 164 (453)
++..++. ..|++++|.++..+.+. .-+ ...++. +.....++-..|+...|+..+-...+.... -.+..
T Consensus 105 ~la~i~~-~~g~~eeAL~~l~~~i~---~~~~~~~lea-----~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 105 LLATAQA-ILGDLDKSLETCVEGID---NDEAEGTTEL-----LLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHHHT---SSCSTTHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHhc---cCCCcCcHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH
Confidence 4444444 46899999888665532 111 122222 234445555688888888877665322100 00111
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHhcC--CcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC----
Q 012934 165 GQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA---- 238 (453)
Q Consensus 165 ~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~---- 238 (453)
....++..-+......+.+..|-.++... .+|+. ....+.|- .++.+|+|.+|...|..+....|..
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~--~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW--KTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH--HHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc--ccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 22222222222222333888887777753 23420 11222222 7889999999999999766543321
Q ss_pred -chHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhhhhhhhHHHHHHHHhcCCHHHHHHHHHhcc
Q 012934 239 -ALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFS 301 (453)
Q Consensus 239 -~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~ 301 (453)
+...--.++..+|.+...+|+ +...++.+- ..+.|=.+++.-+...+ ..|++++.+|.
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL---~~~~P~hp~i~d~~~k~-~~Fd~~~~ky~ 307 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL-DTEDLTNQL---VKLDHEHAFIKHHQEID-AKFDELVRKYD 307 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHH---HHTTCCCHHHHHHHHHH-HHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHH---HHhCCCChHHHHHHHHH-HHHHHHHHHhc
Confidence 012345677788999999998 443333331 12233344555554443 57888888875
No 141
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.66 E-value=1.9 Score=34.12 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
-..|+..|+++.|...+.... .|.+ ......+|..|.++...++|.+|..+|..++...|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 357889999999998877642 4432 2234677889999999999999999999999876653
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=89.64 E-value=2.4 Score=32.26 Aligned_cols=61 Identities=15% Similarity=-0.071 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..++..++...|.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 345567889999999998877642 332 2457788999999999999999999999986554
No 143
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.55 E-value=5.8 Score=43.27 Aligned_cols=100 Identities=12% Similarity=-0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhH
Q 012934 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQF 204 (453)
Q Consensus 127 ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~ 204 (453)
+.+|...+.++...|++++|...+..++.... .. ....+.+-..|.+.|+++.|....++.. .| +.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P----~~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------~~ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP----EF--AAAHSNLASVLQQQGKLQEALMHYKEAIRISP------TF 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Confidence 34466777788889999998887777764321 11 1223345567899999999998777642 23 23
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++.+|.++..+++|.+|.++|..|++..|..
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4567889999999999999999999999977764
No 144
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=89.46 E-value=12 Score=35.30 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=72.2
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchH
Q 012934 88 LLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQE 167 (453)
Q Consensus 88 ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~ 167 (453)
.+....++..|++++|.... +.-+...+.. +..++..+...++..++...+-...... .+... .
T Consensus 38 ~~l~r~yi~~g~~~~al~~~-------~~~~~~~~~a-----~~~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~--~ 101 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEI-------KPSSAPELQA-----VRMFAEYLASHSRRDAIVAELDREMSRS--VDVTN--T 101 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHS-------CTTSCHHHHH-----HHHHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSC--H
T ss_pred HHHHHHHHHCCCHHHHHHHh-------cccCChhHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCC--H
Confidence 33345667778888886532 1111111111 2223333334555566555554443211 01111 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+...+-..|...|+++.|...+.+ | .....++..|.++...|++.+|...|..++...|.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~---~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ---G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT---C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC---C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 2223344678889999999988876 2 22345667888999999999999999999886664
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.31 E-value=2 Score=36.18 Aligned_cols=64 Identities=17% Similarity=-0.016 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.....+-..|+..++++.|...+.+.. .|. ...+++..|.++...++|.+|..+|..|+...|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 334455678889999999988777642 232 2567888999999999999999999999986554
No 146
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.01 E-value=6 Score=34.95 Aligned_cols=63 Identities=13% Similarity=-0.021 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
+.+-..|...|+++.|...+.+.. .|. ....++..|.++...++|.+|..+|..|+..-|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 346678999999999998877642 333 245778899999999999999999999999777643
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.79 E-value=1.4 Score=36.12 Aligned_cols=58 Identities=7% Similarity=-0.060 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
=..|++.|+|+.|....++.. .|. ...+++..|.++...++|.+|..++..|+...|.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 347889999999998777642 232 2557788999999999999999999999985554
No 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.60 E-value=3 Score=32.47 Aligned_cols=61 Identities=16% Similarity=0.055 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 345567889999999999877642 232 2456788999999999999999999999985553
No 149
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.52 E-value=1.5 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=43.7
Q ss_pred HHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 175 RNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..|++.|+|+.|....++.. .|. ....++..|.++...++|.+|..+|..|+..-|.
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 46788899999888777642 232 2457788899999999999999999999975454
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=88.51 E-value=2.6 Score=33.77 Aligned_cols=61 Identities=10% Similarity=-0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..|+...|.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 345568889999999998777642 232 2457888999999999999999999999986665
No 151
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.51 E-value=4.9 Score=41.77 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=71.6
Q ss_pred hcCHHHHHHHHHHHHHH--hhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC------cCccCChhhHHHHHHHH
Q 012934 140 TGDLAEIRGNLLALHRI--ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP------RFEAHSNQQFCRYLFYL 211 (453)
Q Consensus 140 ~~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~------~p~~~~~~~~v~Y~YY~ 211 (453)
.|+..+|...+..++.. ..+-.+....+...|.|...|...|.|+.|..+..++- +++ ...+.+.-++-+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nL 399 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH--NNAQLGMAVMRA 399 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 56778888777777743 33444555667778889999999999999999877641 232 234678888899
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 012934 212 GKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 212 G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
|.+|..+|+|.+|..+|..|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 152
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.49 E-value=2 Score=43.98 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=70.5
Q ss_pred hcCHHHHHHHHHHHHHH--hhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC------cCccCChhhHHHHHHHH
Q 012934 140 TGDLAEIRGNLLALHRI--ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP------RFEAHSNQQFCRYLFYL 211 (453)
Q Consensus 140 ~~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~------~p~~~~~~~~v~Y~YY~ 211 (453)
.|+..++...+..++.. ..+-.+....+...|.|...|...|+|+.|..+..++- +++ ...+.+.-++-+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--YSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHH
Confidence 34566777777666643 34445555667778889999999999999999887642 232 235677788899
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 012934 212 GKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 212 G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
|.+|..+|+|.+|..+|.+|+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 153
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.19 E-value=14 Score=33.37 Aligned_cols=113 Identities=15% Similarity=0.001 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 97 KKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL----TGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 97 ~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~----~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+++++|.....+.++. + .+.+++..+.++.. .++..++...+..+... .+.. ..+.
T Consensus 91 ~~~~~~A~~~~~~a~~~----~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~----a~~~ 151 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL----K-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGD----GCTI 151 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----T-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHH----HHHH
T ss_pred ccCHHHHHHHHHHHHHc----C-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----CcHH----HHHH
Confidence 67778777776655432 1 12235556666666 66777766655555431 1111 1223
Q ss_pred HHHHHHh----cCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHc
Q 012934 173 LLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 234 (453)
Q Consensus 173 llr~Yl~----~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~~ 234 (453)
+-..|.. .++++.|...+.+..-. ....-++..|.++.. .++|.+|..+|..|+..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 3445666 78888887776653211 113456778888888 88888888888888874
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.08 E-value=3 Score=42.79 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=34.5
Q ss_pred HHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 175 RNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..|++.++++.|.....+.. .| .....++..|.++..+++|.+|..+|..|+...|.
T Consensus 48 ~~~~~~g~~~~A~~~~~~al~l~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 48 LAYLRTECYGYALGDATRAIELDK------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34455555555554444321 12 12345667788888888888888888888876665
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=87.98 E-value=7.7 Score=29.84 Aligned_cols=119 Identities=13% Similarity=-0.058 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc
Q 012934 82 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 161 (453)
Q Consensus 82 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~ 161 (453)
.+...+......++..+++++|..+....+.. +... +.+++..+.++...++..++...+..+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 77 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPAN-----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCC-----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---
Confidence 34444455555666789999998887776643 1111 23466777777778898888887777765321
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhH
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEY 221 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy 221 (453)
.. ......+-..|...+.++.|...+.+.. .|. ....++..|.++...++|
T Consensus 78 -~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -AY--SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp -TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTTC
T ss_pred -cC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHHhcC
Confidence 11 1233445568899999999999887642 232 124567788888777664
No 156
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=87.51 E-value=8.8 Score=38.18 Aligned_cols=144 Identities=3% Similarity=-0.102 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCC-hHHHHHHHhcCC--cCccCChhh
Q 012934 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNL-YDQAEKLRSKAP--RFEAHSNQQ 203 (453)
Q Consensus 127 ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~-~~~a~~li~~~~--~p~~~~~~~ 203 (453)
+.+|++...++...++..++...+..+++... ......+.+-.+|...|. ++.|...+.+.. .|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------ 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------ 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------
Confidence 45577878888888888887777766664321 112333445567788897 999998887642 232
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCChhhhhhhhhh---hhhhhHHH
Q 012934 204 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGME---KALRPYFE 280 (453)
Q Consensus 204 ~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~~~ll~~~~l~---~~l~~Y~~ 280 (453)
....+++.|.++...++|.+|..+|..|+..-|..... +-.+-.+-.-+|+...---+-...++ .....|..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a-----~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~ 239 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA-----WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH-----HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34567889999999999999999999999977764322 22222222335776543211111111 12334556
Q ss_pred HHHHHhc
Q 012934 281 LTNAVRI 287 (453)
Q Consensus 281 L~~Av~~ 287 (453)
+..++..
T Consensus 240 lg~~l~~ 246 (382)
T 2h6f_A 240 RYFVISN 246 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.48 E-value=1.8 Score=35.77 Aligned_cols=60 Identities=23% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-..|+..|+++.|...+.+.. .| ....+++..|.++...++|.+|..+|..|+...|..
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4457788999999998877642 23 234677889999999999999999999999876654
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.42 E-value=3.4 Score=32.87 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-..|++.|+++.|.....+.. .|. ....++..|.++...++|.+|..+|..|+...|..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3457889999999988777642 232 24678889999999999999999999999866643
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.42 E-value=2.5 Score=31.92 Aligned_cols=59 Identities=17% Similarity=0.004 Sum_probs=46.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4457889999999998877642 232 2346778999999999999999999999986665
No 160
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.36 E-value=9.3 Score=37.58 Aligned_cols=138 Identities=14% Similarity=0.029 Sum_probs=84.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc---cCccchHHHHH
Q 012934 95 IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR---HDELGQETLLN 171 (453)
Q Consensus 95 ~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~---~~~~~~~~l~n 171 (453)
...|+|++|.++..+.++..+.......+.-.+..|.-++.++...|+..++...+-.+....... ..........+
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 456899999999998888766553322222223346667777888999998887777666443221 11111122222
Q ss_pred H-HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHcCCcC
Q 012934 172 L-LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTI---QLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 172 ~-llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~---~~dy~~A~~~L~~A~~~~p~~ 238 (453)
. ....++..++|+.|.....+.. .|++ ..+++-.|.++.. .+++.+|.+.|..|+...|..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 2234455678999988877642 3332 2344445555443 356788999999999876653
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.29 E-value=2 Score=41.73 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+-..|++.++|+.|...+.+.- .| .....+|..|.++...++|.+|..+|..|+...|.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEE------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34457888899998888776542 23 23456789999999999999999999999876554
No 162
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.05 E-value=3.2 Score=34.94 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-..|+..|+++.|...+.+.. .|. ...+++..|.++...++|.+|..+|..|+...|..
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4457888999999988777632 232 24567889999999999999999999999866654
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=86.80 E-value=2.3 Score=34.52 Aligned_cols=58 Identities=16% Similarity=-0.095 Sum_probs=45.8
Q ss_pred HHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 175 RNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..|++.|+++.|...+.+.. .|. ....++.+|.++...++|.+|..+|..|+...|..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 46778899998888777642 232 34567889999999999999999999999876653
No 164
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.70 E-value=8.3 Score=37.95 Aligned_cols=110 Identities=14% Similarity=0.006 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc---cCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC-----cCcc
Q 012934 127 ARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR---HDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-----RFEA 198 (453)
Q Consensus 127 ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~---~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-----~p~~ 198 (453)
+.+|...+.++...|+.++|...+..+....... +.....+...+.+-..|...|+++.|...+.+.. ++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3345556777777899998888887776433222 2223334444556678999999999988776642 1211
Q ss_pred CChhhHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHcCCc
Q 012934 199 HSNQQFCRYLFYLGKIRT--IQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 199 ~~~~~~v~Y~YY~G~i~~--~~~dy~~A~~~L~~A~~~~p~ 237 (453)
. .......+...|..+. ..++|.+|..+|..|+...|.
T Consensus 131 ~-~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 131 Y-RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp S-CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred c-chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 1 1123334445555444 467999999999999987776
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.50 E-value=5.4 Score=31.90 Aligned_cols=68 Identities=13% Similarity=-0.050 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 167 ETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 167 ~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
......+-..|+..++++.|...+.+.. .|. .......++..|.++...++|.+|..+|..++...|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 3444556678999999999999887642 232 2345778888999999999999999999999986554
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=86.45 E-value=4.6 Score=30.88 Aligned_cols=62 Identities=24% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 170 LNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 170 ~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
...+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 3445578889999999998877642 232 2346778899999999999999999999986554
No 167
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=86.29 E-value=4.8 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.016 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..+-..|+..++++.|...+.+.. .|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 345567889999999998877632 232 2456788999999999999999999999986554
No 168
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=85.76 E-value=23 Score=33.06 Aligned_cols=125 Identities=10% Similarity=-0.007 Sum_probs=79.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...+...|++++|.....++++ .+....+ .+|..+..+....|++.+++..+..+..... ....+.+
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~----~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~- 172 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLA----IEDIDPT----LVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYV- 172 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT----SSSSCTH----HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHH-
T ss_pred HHHHHhcCCHHHHHHHHHHHHh----ccccCcc----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHH-
Confidence 3344567899999887666654 2211111 1356666666667888888877776654321 1122222
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 234 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~ 234 (453)
......+...|.++.|..++.+.. .|. ...++.-.|.++...|++.+|...|..|+..
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 222222334799999998887642 343 2445566788888889999999999999985
No 169
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.66 E-value=3.4 Score=35.39 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
+-..|++.|+++.|...+++.. .| ....+++.+|.++...++|.+|..+|..|+...|...
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDF------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3457788999999998877642 23 2345788899999999999999999999998777543
No 170
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=84.36 E-value=4.2 Score=34.73 Aligned_cols=125 Identities=9% Similarity=-0.104 Sum_probs=70.6
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...++..|++++|.......++. +.-.+.+++..+.++...|+..++...+-.+.... . ...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~~~~-- 76 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DNSYK-- 76 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-ChHHH--
Confidence 34456789999997775544321 12123346667777777888888776655443211 1 11111
Q ss_pred HHHHHHH-HhcCChHHHHHHHhcC-C-cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNY-LHYNLYDQAEKLRSKA-P-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Y-l~~~~~~~a~~li~~~-~-~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+.....+ ...+....|...+.+. . .|. ....++..|.++...|+|.+|..+|..+++..|.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 1111111 1111111222222221 1 232 3456788999999999999999999999987765
No 171
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.35 E-value=3.2 Score=42.26 Aligned_cols=91 Identities=13% Similarity=0.055 Sum_probs=67.4
Q ss_pred cCHHHHHHHHHHHHHH--hhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC------cCccCChhhHHHHHHHHH
Q 012934 141 GDLAEIRGNLLALHRI--ATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP------RFEAHSNQQFCRYLFYLG 212 (453)
Q Consensus 141 ~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~------~p~~~~~~~~v~Y~YY~G 212 (453)
++..++......++.. ..+-.+....+.+.|.+...|...|.|+.|..+..++- +++. ..+.+.-++-+|
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--Hp~~a~~l~nLa 378 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--HPVRGVQVMKVG 378 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC--ChHHHHHHHHHH
Confidence 4555665555555532 23334455566778889999999999999999877642 3332 346778888999
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 012934 213 KIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 213 ~i~~~~~dy~~A~~~L~~A~~ 233 (453)
.+|..+|+|.+|..+|.+|+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999986
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=84.30 E-value=19 Score=30.93 Aligned_cols=135 Identities=10% Similarity=-0.032 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhc-------hhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh
Q 012934 86 CYLLVLIFLIDKKRYNEAKACSSASIARLKNMN-------RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIAT 158 (453)
Q Consensus 86 ~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~-------~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~ 158 (453)
........++..++|++|..+....++...... ......+.+.+|+..+.++...++..++...+..++....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344455566788999999998887776432211 0011223345678888888889999988887777765421
Q ss_pred hccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHH
Q 012934 159 LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAK-ESLLQAA 232 (453)
Q Consensus 159 ~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~-~~L~~A~ 232 (453)
.. ......+-..|+..++++.|...+.+.. .|.. .......|.++...+++.++. ..+...|
T Consensus 120 ----~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 120 ----NN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ----TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC----------
T ss_pred ----cc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1222345568899999999998877642 2322 345667788888888888887 3444444
No 173
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=83.59 E-value=8.5 Score=29.13 Aligned_cols=95 Identities=8% Similarity=-0.150 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcC--CcCccCChhhHH
Q 012934 128 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFC 205 (453)
Q Consensus 128 k~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~--~~p~~~~~~~~v 205 (453)
..++..+.++-..++..++...+..+.+.... . ......+-..|+..|+++.|...+.+. ..|+.-+.....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----N--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 34566666676788888888877777654321 1 223344566889999999999987764 245543444567
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESL 228 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L 228 (453)
..++..|.++...+++..|...|
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 77888999998888777665443
No 174
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=83.30 E-value=2.8 Score=39.16 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChH
Q 012934 274 ALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVA 353 (453)
Q Consensus 274 ~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~ 353 (453)
.+..-..|.+...+|+..+|=+.+....+ ....+.-+...+.+.-..-+..+|++||+++++..||..++ +
T Consensus 98 ~I~~i~~L~~~L~~~~y~~fW~~l~~~~~------l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~---~ 168 (226)
T 1rz4_A 98 PIRQILYLGDLLETCHFQAFWQALDENMD------LLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD---S 168 (226)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHSCTTCH------HHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH---H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcChh------HHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH---H
Confidence 34444678888999999888777654321 11222223344445556678899999999999999974444 8
Q ss_pred HHHHHHHHhHHcCCceeEeeCCCcEEEecccc-----cccCCccccHHHHHHHHHHH
Q 012934 354 DAESIVSKAIRDGAIDATVDHANGWMVSKETG-----DIYSTNEPQLAFNSRIAFCL 405 (453)
Q Consensus 354 eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~-----~v~s~~ep~~~l~~rI~~~l 405 (453)
+++..+.+- |.. +| ++|.|.+.+.. -+...+=+|..+..-|+.|.
T Consensus 169 el~~fi~~~---GW~---vd-~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~~ 218 (226)
T 1rz4_A 169 QLKVWMSKY---GWS---AD-ESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218 (226)
T ss_dssp HHHHHHHHH---TCE---EC-C--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC--
T ss_pred HHHHHHHHC---CCE---EC-CCccEEeCCCcccccceeeeecccHHHHHHHHHHHH
Confidence 888777762 653 22 34555443221 12233345666666666554
No 175
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.07 E-value=3.3 Score=32.81 Aligned_cols=66 Identities=17% Similarity=-0.074 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--c-CccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--R-FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~-p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
|=+.++..+.|..|...+..+- . ++..+.......++++|..+...|++.+|..++..|+..-|..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 4467888999999988776531 1 1111223455667899999999999999999999999877763
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.44 E-value=3.6 Score=34.52 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=46.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-c-C-----ccC--C-----hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP-R-F-----EAH--S-----NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~-~-p-----~~~--~-----~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.=..|++.|+|+.|.....+.. . + +.. + ....+..++..|.++...++|.+|..++..|+...|.
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 3346778888888877665531 1 0 000 0 3456678888999999999999999999999986554
No 177
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=81.58 E-value=4.2 Score=31.12 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=43.3
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecc
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 383 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~ 383 (453)
.-.-++|.++|..+++.. +++-.-|-.+..+|.|.|.||-...||...+
T Consensus 18 ~~Kvv~LedLA~~F~l~t----~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRT----QDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSCH----HHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCCh----HHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 346789999999999998 8999999999999999999998877777654
No 178
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.52 E-value=3.3 Score=30.82 Aligned_cols=41 Identities=5% Similarity=0.215 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEE
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMV 380 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~ 380 (453)
..++..+||..++++. ..+..+|..|...|+|.. +..||..
T Consensus 24 ~~~s~~eLA~~lglsr----~tv~~~l~~L~~~G~I~~---~~~G~y~ 64 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPK----KTLNQVLYRLKKEDRVSS---PSPKYWS 64 (67)
T ss_dssp SCEEHHHHHHHHCSCH----HHHHHHHHHHHHTTSEEE---EETTEEE
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEec---CCCceEe
Confidence 5699999999999997 899999999999999854 3357654
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=81.19 E-value=21 Score=31.44 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=74.6
Q ss_pred HhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHhhhccCccchHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTG----DLAEIRGNLLALHRIATLRHDELGQETL 169 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~----~l~~~r~~l~~~~rta~~~~~~~~~~~l 169 (453)
+...+++++|..+..+.++. -+ +..++.+..++.. + +..++...+..+ ....+..++..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~---g~--------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A----~~~g~~~a~~~- 90 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQ---GD--------GDALALLAQLKIR-NPQQADYPQARQLAEKA----VEAGSKSGEIV- 90 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHT---TC--------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHH----HHTTCHHHHHH-
T ss_pred HhcCCCHHHHHHHHHHHHHc---CC--------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH----HHCCCHHHHHH-
Confidence 33478999998887766532 11 1234555555554 4 566666655544 33333333332
Q ss_pred HHHHHHHHHh----cCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHc
Q 012934 170 LNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 234 (453)
Q Consensus 170 ~n~llr~Yl~----~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~~ 234 (453)
|-..|.. .++++.|.....+..--. +......=+|.+|.+|.. .+|+.+|..+|..|...
T Consensus 91 ---Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 91 ---LARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp ---HHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3345666 789999998877642110 101335567788999988 88999999999999974
No 180
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=79.64 E-value=55 Score=33.03 Aligned_cols=102 Identities=12% Similarity=-0.045 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcC-CcCccCChhhHHH
Q 012934 128 RLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA-PRFEAHSNQQFCR 206 (453)
Q Consensus 128 k~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~-~~p~~~~~~~~v~ 206 (453)
.+|+.++...+..|+..+++..+-.++... ++..+ .+.+...+.+.+.+.++.|..++.+. ..|... .-.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~----~~~ 392 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHV 392 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC----THH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCch--HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc----hHH
Confidence 457777888888899999988877776421 11111 23344445566788899999988874 233221 111
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 207 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 207 Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
|.-.....+...|++.+|...|..|+..+|..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 22112222335899999999999999987753
No 181
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=78.69 E-value=59 Score=32.81 Aligned_cols=128 Identities=9% Similarity=-0.018 Sum_probs=80.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHH
Q 012934 91 LIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 170 (453)
Q Consensus 91 ~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~ 170 (453)
...+...|++++|..+..++++. +.... +.+|..+..+....|++.+++..+..+.... ......++.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~----~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~~~~~~~~ 395 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI----EDIDP----TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYVT 395 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS----SSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TCCTHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc----cccCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CCchHHHHH
Confidence 33445678999998887776642 21110 1346666666666778888887777765421 111222232
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+.. -.|...|+++.|..+....- .|.+ ..+..-.|.+....|++.+|...|..|+..+|.
T Consensus 396 ~a~-~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 396 AAL-MEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHH-HHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHH-HHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 222 23446899999999887642 3422 234455666777789999999999999986554
No 182
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.68 E-value=6.6 Score=30.55 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=35.8
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccccccC
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYS 389 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~v~s 389 (453)
+++..+||.+||++. ..|...|.+|..+|+|.-. ....|+-......++|.
T Consensus 27 ~~t~~eLA~~Lgvsr----~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKE-AGTPPLWKIAVSTQAWN 77 (81)
T ss_dssp CBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE-SSSSCEEEEC-------
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEec-CCCCCeeEEeCcHHhcc
Confidence 899999999999997 8999999999999999533 23335555555444443
No 183
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=78.07 E-value=5.6 Score=30.49 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=33.1
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
+++..+||.+||++. ..+...|.+|..+|+|...-+.
T Consensus 31 ~~t~~eLA~~Lgvs~----~tV~~~L~~L~~~G~I~~~g~~ 67 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKEAGT 67 (77)
T ss_dssp CEEHHHHHHHHCCCH----HHHHHHHHHHHHHTSEEEECSS
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecCCC
Confidence 899999999999997 8999999999999999765443
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.32 E-value=5.8 Score=28.96 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 202 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 202 ~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
......++..|.++...++|.+|..+|..|+...|..
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3456778899999999999999999999999866643
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=77.12 E-value=5.8 Score=30.66 Aligned_cols=36 Identities=8% Similarity=-0.123 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcCc
Q 012934 204 FCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAA 239 (453)
Q Consensus 204 ~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~ 239 (453)
....+|..|.++...++|.+|..+|..|++..|...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 345678999999999999999999999999777543
No 186
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=76.65 E-value=4.5 Score=35.49 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 201 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 201 ~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+.+.-.|+||+|.-+...++|.+|.+++..+++.-|.
T Consensus 67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3467789999999999999999999999999997664
No 187
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.89 E-value=31 Score=30.62 Aligned_cols=132 Identities=9% Similarity=-0.046 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhh-hHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012934 77 HPLPELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRT-VDVLAARLYFYYSLCYELTGDLAEIRGNLLALHR 155 (453)
Q Consensus 77 ~~~p~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~-~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~r 155 (453)
...|.+.+|...=.+-.++|.+.|+.|.-++..++.....- +.. --...+.+.+|++-++=..++...|...+-.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~-~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN-PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC-cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44678888887777778889999999999888888775432 221 2344556677777777667777766666665542
Q ss_pred Hh--hhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012934 156 IA--TLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 230 (453)
Q Consensus 156 ta--~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~ 230 (453)
-. .++++.. ...+ -.....|++.....-+...|-.++++...+++.+|...|+.
T Consensus 92 ~~k~l~k~~s~-~~~~--------------------~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 92 QKKALSKTSKV-RPST--------------------GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHCC-----------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhcCCCc-cccc--------------------cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11 1121110 0000 01112333322233456666699999999999999988664
No 188
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.40 E-value=6.5 Score=35.03 Aligned_cols=61 Identities=21% Similarity=0.156 Sum_probs=48.4
Q ss_pred HHHHHhcCChHHHHHHHhc----CC-cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 012934 174 LRNYLHYNLYDQAEKLRSK----AP-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 234 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~----~~-~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~ 234 (453)
.+..+..+.|+.|..+-+. .+ -|+.+++.+..+-++|.|-.+..+++|.+|...|.+|+..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3566777888877665443 22 3445789999999999999999999999999999999863
No 189
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=74.57 E-value=18 Score=33.75 Aligned_cols=129 Identities=9% Similarity=-0.055 Sum_probs=73.4
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHH
Q 012934 89 LVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQET 168 (453)
Q Consensus 89 l~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~ 168 (453)
.....++..|++++|......+++. +... +.+++..+.++...|+..++...+-.+.+.. +.....
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~----~P~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~ 187 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQL----SNQN-----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----QDTRYQ 187 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----TTSC-----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----CSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh----CCcc-----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----cchHHH
Confidence 3444456678888887765544322 1111 1234556666767888888776655543221 111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcC--CcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 169 LLNLLLRNYLHYNLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 169 l~n~llr~Yl~~~~~~~a~~li~~~--~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
..+ ....+...+..+.|...+.+. ..| +....+|.+|.++...++|.+|...|..+++.-|..
T Consensus 188 ~~~-~~~~l~~~~~~~~a~~~l~~al~~~P------~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 188 GLV-AQIELLXQAADTPEIQQLQQQVAENP------EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHH-HHHHHHHHHTSCHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHH-HHHHHHhhcccCccHHHHHHHHhcCC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 111 112234445555444433331 122 234567888999999999999999999999876653
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=74.31 E-value=10 Score=29.78 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 202 QQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 202 ~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
......++.+|.++...++|.+|..+|..|+...|..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4567788999999999999999999999999977754
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.21 E-value=32 Score=32.98 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhcc
Q 012934 82 LEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRH 161 (453)
Q Consensus 82 ~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~ 161 (453)
.++.+ -....+++.++|++|.++...++. ...-+. +.|-.+.++-..++..++...+..+ ....
T Consensus 102 ~dl~L--ayA~~L~~~g~y~eA~~~l~~~~~------~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a----~~~~ 165 (282)
T 4f3v_A 102 LAITM--GFAACEAAQGNYADAMEALEAAPV------AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSA----GKWP 165 (282)
T ss_dssp HHHHH--HHHHHHHHHTCHHHHHHHHTSSCC------TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTG----GGCS
T ss_pred hHHHH--HHHHHHHHCCCHHHHHHHHHHHHh------cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHh----hccC
Confidence 44444 345667788999999877433321 111122 2444455555677777777655422 1111
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHhcCC-cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 162 DELGQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 162 ~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
++.-..-....+=..+-..|+++.|.....+.. -| ..+.....=.|+.|.+...+|+..+|...|..++..-|.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 221111111223346678899999888777542 11 102224444588899999999999999999999986664
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=72.69 E-value=24 Score=35.86 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=64.5
Q ss_pred ccCHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--hhhccCccchHHHHHHH
Q 012934 97 KKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRI--ATLRHDELGQETLLNLL 173 (453)
Q Consensus 97 ~~~~~~A~~~~~~lv~~l~~-~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~n~l 173 (453)
.++|++|..+..+.++.... +...-.+ .+.++--.+.++...|+..+|......++.. ...-.+....+...|.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 36789999888877766443 2222122 2333455566666789999998888777733 33334445556667778
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 012934 174 LRNYLHYNLYDQAEKLRSKA 193 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~ 193 (453)
-..|...|+|+.|..++.++
T Consensus 389 a~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHH
Confidence 89999999999999887763
No 193
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=71.68 E-value=85 Score=31.32 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 177 YLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 177 Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
++-.|+++.|...+.+..--+ ++ ...+..+|.++...|++.+|.++|..|++.-|.
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln---~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLE---MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHhCCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 345599999999888753111 11 335588999999999999999999999997664
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=71.61 E-value=19 Score=36.37 Aligned_cols=32 Identities=9% Similarity=-0.104 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
+.-++..|..+..+++|.+|..+|..|+...|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p 299 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE 299 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 33444455555555555555555555554333
No 195
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=71.59 E-value=19 Score=34.53 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCcc-chHHHHHHHHHHHHhcCChHHHHHHHhcCC-cCccCChhhHHHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDEL-GQETLLNLLLRNYLHYNLYDQAEKLRSKAP-RFEAHSNQQFCRY 207 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~-~~~~l~n~llr~Yl~~~~~~~a~~li~~~~-~p~~~~~~~~v~Y 207 (453)
+..|+.+.-..|+..++...+..+.. .+... .++. +--.|++.+.++.|...+.... .| .+.....-
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~~~~~----~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a 173 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV----AGSEHLVAWM----KAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHHHHHH----HHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchHHHHH----HHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHH
Confidence 34456666667888888776654432 11111 2222 2237899999999999887542 22 22233456
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 208 LFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 208 ~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
+||+|.++...|+|.+|..+|.+|..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 79999999999999999999999985
No 196
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=70.55 E-value=14 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHH-HHHHhhH--HHHHHHHHHHHHcCCc
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKI-RTIQLEY--TDAKESLLQAARKAPV 237 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i-~~~~~dy--~~A~~~L~~A~~~~p~ 237 (453)
..+-..|+..++++.|...+.+.. .|.+ ..+++..|.+ +...++| .+|..+|..++...|.
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 345567788888888887766532 2321 3456667777 6777887 8888888888875554
No 197
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=69.61 E-value=15 Score=34.11 Aligned_cols=60 Identities=10% Similarity=-0.118 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
+-..|+..|+++.|.....+.. .|. ...+++..|.++...++|.+|..++..|+...|..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4457889999999999877642 332 35678899999999999999999999999866653
No 198
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=65.43 E-value=17 Score=30.91 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=35.8
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~~ 376 (453)
-.++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.+
T Consensus 20 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSP----ETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp CTTSCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 47899999999999987 899999999999999964 567664
No 199
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=64.92 E-value=18 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
..++.++||..+|++. ..+-..+..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~----~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTD----YQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEE
Confidence 5699999999999987 889999999999999964
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=63.63 E-value=28 Score=34.17 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 204 FCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 204 ~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
....++..|.++...++|.+|..++..|+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344444455555555555555555555554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=62.38 E-value=16 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 205 CRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 205 v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
...++..|.++...++|.+|..+|..|+...|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 3567889999999999999999999999866643
No 202
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.10 E-value=11 Score=29.09 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 326 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 326 rki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
+..-....+++++++|..++++. ..+...+..+...|.|.
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS~----~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTPQ----PMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCCH----HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE
Confidence 33334578999999999999997 89999999999999983
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.72 E-value=11 Score=29.68 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 012934 206 RYLFYLGKIRTIQLEYTDAKESLLQAARK 234 (453)
Q Consensus 206 ~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~ 234 (453)
.=+|-.|.++..+++|..|..+|..|+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 44688999999999999999999999974
No 204
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.70 E-value=19 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.041 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 201 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 201 ~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+...-.|.||++.-+.-.++|.+|.++....++.-|.
T Consensus 74 ~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 74 ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3567789999999999999999999999999987664
No 205
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.25 E-value=11 Score=29.79 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=35.4
Q ss_pred HHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeE
Q 012934 326 RNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 371 (453)
Q Consensus 326 rki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~ 371 (453)
+.+-....+++++++|..++++. .-+...+..+...|.|.=.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~----~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQ----PLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCH----HHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 33334568999999999999997 8999999999999999543
No 206
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.50 E-value=19 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 201 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 201 ~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
+...-.|.||+|.-+.-.++|.+|.+++...++.-|.
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 4577889999999999999999999999999997664
No 207
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.14 E-value=80 Score=31.67 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=78.8
Q ss_pred hcccCHHHHHHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHH
Q 012934 95 IDKKRYNEAKACSSASIARLKNMNR-RTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLL 173 (453)
Q Consensus 95 ~d~~~~~~A~~~~~~lv~~l~~~~~-r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~l 173 (453)
.+.|++++..++...+...+..++. ++-..+ -...-.+....+....--.....+...|......|-.-.+-..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v----~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL 105 (394)
T 3txn_A 30 KQEGKAKELADLIKVTRPFLSSISKAKAAKLV----RSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARL 105 (394)
T ss_dssp HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHH----HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHH----HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888776665444333333321 121111 11111111122333333344444444443222222222344468
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
.+.|+..+.|..|..++.+.. ....-.+.+.+.-+-...++|...+|+.++...++.|-.
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 899999999999988887631 111123678899999999999999999999999999865
No 208
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=58.07 E-value=38 Score=33.02 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHhhcc----cccHHHHHHHhCCCCCCChHHHHHHH
Q 012934 288 GDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYS----RISLADVAKKLRLDSANPVADAESIV 359 (453)
Q Consensus 288 Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~~Ys----rIsL~dIa~~L~l~~~~d~~eaE~iv 359 (453)
||...|=+.+..-...+... -+++..-..+.+..++.++++|. .+|++.++..|+++++ +|++..+
T Consensus 177 gNY~rFFrL~~~~~~pyL~a---clle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~---ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMG---FFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNR---QEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHH---HHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSH---HHHHHHH
T ss_pred chHHHHHHHHhccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCH---HHHHHHH
Confidence 77777777665421122211 23444344555667778888994 8999999999999985 7776665
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=56.79 E-value=73 Score=32.03 Aligned_cols=98 Identities=13% Similarity=-0.037 Sum_probs=61.4
Q ss_pred HhcccCHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--hhhccCccchHHHH
Q 012934 94 LIDKKRYNEAKACSSASIARLKN-MNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRI--ATLRHDELGQETLL 170 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~-~~~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rt--a~~~~~~~~~~~l~ 170 (453)
+..+++|++|.....+.+..... +...- ...+.++--.+.++...|+..+|......++.. ...-.+....+...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDIN--IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTS--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34568888888777666543222 11111 122333444555566678888888877776633 23333444556666
Q ss_pred HHHHHHHHhcCChHHHHHHHhcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKA 193 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~ 193 (453)
|.|-..|...|+++.|..++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 77888999999999999887763
No 210
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=56.41 E-value=51 Score=26.60 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|..+|.|.-..++.+
T Consensus 47 ~~~~~~~la~~l~~~~----~tvs~~l~~L~~~gli~r~~~~~d 86 (138)
T 1jgs_A 47 ACITPVELKKVLSVDL----GALTRMLDRLVCKGWVERLPNPND 86 (138)
T ss_dssp SSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECTTC
T ss_pred CCCCHHHHHHHHCCCh----HHHHHHHHHHHHCCCEEecCCccc
Confidence 5789999999999987 889999999999999976665543
No 211
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.37 E-value=1.7e+02 Score=29.45 Aligned_cols=66 Identities=8% Similarity=0.073 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012934 167 ETLLNLLLRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 232 (453)
Q Consensus 167 ~~l~n~llr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~ 232 (453)
+-+.-.|.++|...|.+..|.+++.... .....+....+.|+....+++...+||..|...+..+-
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445567899999999999999988742 22346778999999999999999999999998888764
No 212
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=55.45 E-value=38 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=32.7
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEe
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV 372 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~I 372 (453)
...++.++||..++++. ..+-..+..|...|.|...-
T Consensus 28 ~~~~~~~ela~~l~is~----~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTP----GNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HSEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 36799999999999987 78999999999999997555
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=54.93 E-value=20 Score=36.53 Aligned_cols=57 Identities=18% Similarity=0.002 Sum_probs=45.1
Q ss_pred HHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 176 NYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 176 ~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.|++.++++.|.....+.. .|. ....++..|.++..+++|.+|..+|..|+...|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4667888888888776542 232 26678899999999999999999999999866653
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=54.55 E-value=2.3e+02 Score=30.37 Aligned_cols=155 Identities=13% Similarity=0.017 Sum_probs=85.2
Q ss_pred HhcccCHHHHHHHHHHHHHHHHh-hc------hh---hhH---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhc
Q 012934 94 LIDKKRYNEAKACSSASIARLKN-MN------RR---TVD---VLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLR 160 (453)
Q Consensus 94 l~d~~~~~~A~~~~~~lv~~l~~-~~------~r---~~d---~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~ 160 (453)
.-..+++++|.++...+++.+.. ++ .. ..+ .-.+++|..++......+.+..+|..+-.+..... .
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~ 466 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-L 466 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-G
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-C
Confidence 33457788888888777766421 10 00 000 01234567677666667788889987777743211 1
Q ss_pred cCccchHHHHHHHHHHHHhc-CChHHHHHHHhcC--CcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 161 HDELGQETLLNLLLRNYLHY-NLYDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 161 ~~~~~~~~l~n~llr~Yl~~-~~~~~a~~li~~~--~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.....++.... .-++. +.++.|.++.... .+|.. +..++.| +.+....++...|...|+.|+..+|.
T Consensus 467 --~~~~lyi~~A~--lE~~~~~d~e~Ar~ife~~Lk~~p~~--~~~w~~y----~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 467 --VTPDIYLENAY--IEYHISKDTKTACKVLELGLKYFATD--GEYINKY----LDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp --SCTHHHHHHHH--HHHTTTSCCHHHHHHHHHHHHHHTTC--HHHHHHH----HHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred --CChHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHHCCCc--hHHHHHH----HHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 11223332222 22333 4588888887763 24532 2222222 23445568999999999999987663
Q ss_pred CchHhHHHHHHHHHhHHHhcCCCC
Q 012934 238 AALGFRVQCNKWAIIVRLLLGEIP 261 (453)
Q Consensus 238 ~~~~~~~~alK~lIlv~LL~G~iP 261 (453)
......+++.++=...-.|...
T Consensus 537 --~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 537 --SHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp --TTHHHHHHHHHHHHHHHTCCSH
T ss_pred --HHHHHHHHHHHHHHHHHcCCHH
Confidence 1234455555555555555543
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=54.09 E-value=15 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=36.5
Q ss_pred hHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 183 YDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 183 ~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
.+.|..++.+.- -| ..++=.+++|.++..+++|.+|..+++.++..-|.
T Consensus 25 ~~~A~~~l~~AL~~dp------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 556666665531 22 33455678899999999999999999999987666
No 216
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=53.89 E-value=8.8 Score=32.63 Aligned_cols=57 Identities=11% Similarity=-0.078 Sum_probs=45.2
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP 236 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p 236 (453)
-..|+..|+++.|...+++.. .| +....++..|.++...|+|.+|..+|..++...|
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQ------SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHH------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 356788999999998887753 23 2345678899999999999999999999887655
No 217
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=52.79 E-value=26 Score=30.64 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=35.3
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce---eEeeCCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID---ATVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~---A~Id~~~ 376 (453)
-.++|.++||.++|++. ..+-..+.+|...|.|. +.+|+.+
T Consensus 29 ~~~~s~~eLA~~lglS~----~tv~~~l~~L~~~G~I~~~~~~~d~~~ 72 (171)
T 2ia0_A 29 DARLTISELSEQLKKPE----STIHFRIKKLQERGVIERYTIILGEQL 72 (171)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTTT
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecccCCHHH
Confidence 46899999999999998 89999999999999995 4566653
No 218
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=52.22 E-value=20 Score=30.98 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=36.4
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce---eEeeCCC
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID---ATVDHAN 376 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~---A~Id~~~ 376 (453)
.-.++|.++||..+|++. ..+-..+.+|...|.|. |.+|+.+
T Consensus 14 ~~~~~s~~~la~~lg~s~----~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 14 EDSTLAVADLAKKVGLST----TPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp TCSCSCHHHHHHHHTCCH----HHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 357899999999999998 89999999999999985 5677654
No 219
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=51.65 E-value=29 Score=26.59 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
-.+++.+||..+|++. ..|...|..|-.+|+|.
T Consensus 23 ~~psv~EIa~~lgvS~----~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGLSI----YQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEE
Confidence 4599999999999965 78999999999999994
No 220
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=50.56 E-value=27 Score=29.32 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=35.3
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCC
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 375 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~ 375 (453)
...++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSP----PSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEecccChh
Confidence 347899999999999987 899999999999999964 46655
No 221
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=50.23 E-value=80 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhchh-hhHHHHHHHH----HHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 012934 83 EIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRR-TVDVLAARLY----FYYSLCYELTGDLAEIRGNLLALHRIA 157 (453)
Q Consensus 83 e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~~r-~~d~l~ak~~----~~~~~~~e~~~~l~~~r~~l~~~~rta 157 (453)
+..++.-...-+...|+|++|..+....+.. ||++ .++.=.++.| |....+....++.+++...+-.++...
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHY---FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3445555566677789999999998888774 5554 3344445566 888889999999999888777776544
Q ss_pred hh
Q 012934 158 TL 159 (453)
Q Consensus 158 ~~ 159 (453)
..
T Consensus 133 p~ 134 (159)
T 2hr2_A 133 EE 134 (159)
T ss_dssp HH
T ss_pred CC
Confidence 33
No 222
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=49.06 E-value=34 Score=28.09 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=36.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 383 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~ 383 (453)
..++.++||..++++. ..++.++..|...|.|...=....||.--.+
T Consensus 25 ~~~s~~ela~~~~i~~----~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSE----HYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred CcCCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEecCCCCCceEeCCC
Confidence 4699999999999997 8999999999999999654333456665443
No 223
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=47.65 E-value=30 Score=29.64 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=34.6
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~ 375 (453)
..++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 22 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVALSP----SPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEeeecccCChH
Confidence 56899999999999987 889999999999999963 55654
No 224
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=47.44 E-value=30 Score=26.43 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHh
Q 012934 210 YLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAII 252 (453)
Q Consensus 210 Y~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIl 252 (453)
..|.-.+.++++.+|..||..|+.=||+- +....+|+.-+|
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP--~~LL~i~q~tlP 62 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP--QQLLQVLQQTLP 62 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHhhCC
Confidence 36888888899999999999999988863 334455554433
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=46.89 E-value=37 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCcC
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
|-.|..+...++|.+|...|..++...|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 557899999999999999999999876653
No 226
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=46.87 E-value=77 Score=24.15 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=33.4
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++..+||..++++. ..+-.+|..|...|.|...-+
T Consensus 32 ~~~~s~~ela~~l~is~----~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSA----RFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HCCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEEee
Confidence 35799999999999987 899999999999999976554
No 227
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=46.70 E-value=30 Score=29.20 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=35.4
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCCC
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHAN 376 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~~ 376 (453)
.-.++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.+
T Consensus 20 ~~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~~~~~ 64 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTR----QRIARRIDKLKKLGIIRKFTIIPDIDK 64 (151)
T ss_dssp HCTTCCHHHHHHHTTSCH----HHHHHHHHHHHHHTSEEEEEEEECTGG
T ss_pred HcCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEEecCChHH
Confidence 347899999999999987 889999999999999953 366553
No 228
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=45.94 E-value=23 Score=29.81 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=34.9
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~ 375 (453)
-.++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 15 ~~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPK----ATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp CTTSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 46899999999999997 899999999999999965 46654
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=45.54 E-value=30 Score=29.93 Aligned_cols=35 Identities=20% Similarity=0.033 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 203 QFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 203 ~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
..=.|.||++.-+.-.+||.+|.++....++.-|.
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 56679999999999999999999999999986554
No 230
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=45.28 E-value=2.3e+02 Score=33.73 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHhcccCHHHHHHH----------HHHHHHHHHhhchhhhHHH----HHHHHHHHHHHHHhhcCHHHHHHHHHHHH-
Q 012934 90 VLIFLIDKKRYNEAKAC----------SSASIARLKNMNRRTVDVL----AARLYFYYSLCYELTGDLAEIRGNLLALH- 154 (453)
Q Consensus 90 ~~~~l~d~~~~~~A~~~----------~~~lv~~l~~~~~r~~d~l----~ak~~~~~~~~~e~~~~l~~~r~~l~~~~- 154 (453)
+..-+++.++|+||+.+ ...+++.+..+ .|..+.. ..++|+-++.+.+..|++.+|......+-
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nl-drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD 1133 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNL-DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD 1133 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q ss_pred --------HHhhhccCccchHHHHHH-------------HHHHHHhcCChHHHHHHHhcCCcCccCChhhH---------
Q 012934 155 --------RIATLRHDELGQETLLNL-------------LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQF--------- 204 (453)
Q Consensus 155 --------rta~~~~~~~~~~~l~n~-------------llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~--------- 204 (453)
.++....+-....-.... +.-.|-+.++++....+++....+.-....+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Q ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012934 205 -------CRYLFYLGKIRTIQLEYTDAKESLLQA 231 (453)
Q Consensus 205 -------v~Y~YY~G~i~~~~~dy~~A~~~L~~A 231 (453)
+.++.-.|..+...++|.+|.+.+..|
T Consensus 1214 A~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1214 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh
No 231
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=43.60 E-value=96 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=33.6
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++..+||..+|++. ..+-.++..|...|.|.-.-+
T Consensus 34 ~~~~t~~ela~~l~is~----~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSK----TTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeecc
Confidence 56799999999999997 889999999999999976544
No 232
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=43.26 E-value=30 Score=29.29 Aligned_cols=74 Identities=5% Similarity=0.077 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhH
Q 012934 284 AVRIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAI 363 (453)
Q Consensus 284 Av~~Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI 363 (453)
-+..|.+.-=+-.+..|+.....++-+.++..+... ......-++.+.||.+++++. .++..++.++|
T Consensus 9 ~~~~G~~~ip~~LL~~y~~LgLs~~E~~lLl~L~~~--------~~~g~~~ps~~~LA~~~~~s~----~~v~~~L~~L~ 76 (135)
T 2v79_A 9 MQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMH--------LEKGSYFPTPNQLQEGMSISV----EECTNRLRMFI 76 (135)
T ss_dssp HHHHCEEEEEHHHHHHHHHHTCCHHHHHHHHHHHHH--------HTTTCCSCCHHHHHTTSSSCH----HHHHHHHHHHH
T ss_pred HHHcCCccchHHHHHHHHHhCCCHHHHHHHHHHHHH--------HhcCCCCCCHHHHHHHHCcCH----HHHHHHHHHHH
Confidence 344454333334455555555555555444443221 112235689999999999998 99999999999
Q ss_pred HcCCce
Q 012934 364 RDGAID 369 (453)
Q Consensus 364 ~dG~I~ 369 (453)
..|.|.
T Consensus 77 ~KGlI~ 82 (135)
T 2v79_A 77 QKGFLF 82 (135)
T ss_dssp HHTSCE
T ss_pred HCCCEE
Confidence 999995
No 233
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=42.45 E-value=76 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
..++..+|+..++++. ..+-..+..|...|.|...-+
T Consensus 37 ~~~s~~ela~~l~is~----~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 37 PGTSAGELTRITGLSA----SATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CSEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEEEEC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEec
Confidence 4799999999999987 889999999999999965543
No 234
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=42.01 E-value=85 Score=27.35 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcC----ChHHHHHHHhcCCcCccCChhhHH
Q 012934 130 YFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYN----LYDQAEKLRSKAPRFEAHSNQQFC 205 (453)
Q Consensus 130 ~~~~~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~----~~~~a~~li~~~~~p~~~~~~~~v 205 (453)
++.+..++...++..++...+..+. ...+...+.. +-..|.. + +++.|...+.+..-+ ...
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~----~~g~~~a~~~----lg~~y~~-~g~~~~~~~A~~~~~~A~~~------g~~ 85 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAA----AQGDGDALAL----LAQLKIR-NPQQADYPQARQLAEKAVEA------GSK 85 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----HTTCHHHHHH----HHHHTTS-STTSCCHHHHHHHHHHHHHT------TCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHHHHHH----HHHHHHc-CCCCCCHHHHHHHHHHHHHC------CCH
Confidence 4555666666777777766555543 2233333333 3334566 6 788888877764222 123
Q ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHHcC
Q 012934 206 RYLFYLGKIRTI----QLEYTDAKESLLQAARKA 235 (453)
Q Consensus 206 ~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~~~ 235 (453)
.-+|.+|.++.. .+|+.+|..+|..|...-
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 345678888876 789999999999998743
No 235
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=41.98 E-value=37 Score=29.54 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=40.8
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccccc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGD 386 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~~ 386 (453)
..++..+||..++++. .-++.++.+|...|.|..+=-...||.--.+..+
T Consensus 43 ~~~s~~eIA~~~~i~~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e 92 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSE----HYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK 92 (159)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH
Confidence 3699999999999998 8999999999999999876555567776555433
No 236
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.69 E-value=27 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=38.8
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
.++.++||..++++. .-++.++.+|-..|.|..+=-...||.--.+.
T Consensus 28 ~~s~~~IA~~~~i~~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 28 CISLKSIAEENNLSD----LYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 699999999999998 89999999999999997654444577655544
No 237
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=41.61 E-value=2.7e+02 Score=27.42 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=11.8
Q ss_pred ccCHHHHHHHHHHHHH
Q 012934 97 KKRYNEAKACSSASIA 112 (453)
Q Consensus 97 ~~~~~~A~~~~~~lv~ 112 (453)
.+++++|.....+.++
T Consensus 56 ~~~~~~A~~~~~~a~~ 71 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE 71 (490)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 5788988887666653
No 238
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=41.59 E-value=25 Score=33.83 Aligned_cols=64 Identities=6% Similarity=-0.124 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC--cCccC-----------ChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCc
Q 012934 174 LRNYLHYNLYDQAEKLRSKAP--RFEAH-----------SNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 174 lr~Yl~~~~~~~a~~li~~~~--~p~~~-----------~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~~~p~ 237 (453)
-..|++.++|+.|.....+.. .|... ........++..|.++...++|.+|..+|..|+...|.
T Consensus 186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346667777777776555421 22211 00111236788999999999999999999999986554
No 239
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=40.11 E-value=65 Score=32.15 Aligned_cols=148 Identities=15% Similarity=0.042 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhhc-----CHHHHHHHHHH
Q 012934 80 PELEIYCYLLVLIFL--IDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTG-----DLAEIRGNLLA 152 (453)
Q Consensus 80 p~~e~~~~ll~~~~l--~d~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~~~-----~l~~~r~~l~~ 152 (453)
|........|..+++ ...+++++|..+ + ++..+.=.+..++.+..++. .| +..++...+..
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~----------~-~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKY----------L-DNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHH----------H-HHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHH----------H-HHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Q ss_pred HHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012934 153 LHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 232 (453)
Q Consensus 153 ~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~ 232 (453)
+. ..+...+..+..+...-.--..+++.|.....+..-+........+-+.|..|. ....|+.+|..+|..|.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~--g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGK--GTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCT--TBCCCHHHHHHHHHHHH
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHH
Q ss_pred HcCCcCchHhHHHH
Q 012934 233 RKAPVAALGFRVQC 246 (453)
Q Consensus 233 ~~~p~~~~~~~~~a 246 (453)
..-+..+......+
T Consensus 386 ~~g~~~a~~~l~~l 399 (452)
T 3e4b_A 386 AQDTPEANDLATQL 399 (452)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
No 240
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=39.45 E-value=77 Score=26.14 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=42.7
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC-cEEEecccccccCCccccHHHHHHHHHHHHHHH
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN-GWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHN 409 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~-G~v~~~~~~~v~s~~ep~~~l~~rI~~~l~l~~ 409 (453)
-++.++||..++++. .++...+.+++..|.|.=.-+... |-+ .++|+= ..+-.++..++....
T Consensus 51 ~ps~~~LA~~l~~s~----~~V~~~l~~Le~kGlI~~~~~~~~~g~~-----~~~Ydl----~pl~~kL~~~~~~~~ 114 (128)
T 2vn2_A 51 FPTPAELAERMTVSA----AECMEMVRRLLQKGMIAIEEHTDEQGIR-----NEKYTL----EPLWEKLVHHLYTQA 114 (128)
T ss_dssp SCCHHHHHHTSSSCH----HHHHHHHHHHHHTTSSEECC---------------CEEC----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEeEECCCCcE-----EEEEeh----HHHHHHHHHHHHHHH
Confidence 389999999999987 899999999999999954433222 222 234433 567777877776554
No 241
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=38.91 E-value=50 Score=27.01 Aligned_cols=87 Identities=17% Similarity=0.014 Sum_probs=53.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHh----cCChHHHHHHHhcCCcCccCChhhHHHHHH
Q 012934 134 SLCYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLF 209 (453)
Q Consensus 134 ~~~~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~----~~~~~~a~~li~~~~~p~~~~~~~~v~Y~Y 209 (453)
..++......+++ ...++.++...+..++..+ =..|.. .++++.|.....+.--. ....=.|
T Consensus 32 g~~y~~g~~~~~A----~~~~~~Aa~~g~~~a~~~L----g~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~ 97 (138)
T 1klx_A 32 SLVSNSQINKQKL----FQYLSKACELNSGNGCRFL----GDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCL 97 (138)
T ss_dssp HHHTCTTSCHHHH----HHHHHHHHHTTCHHHHHHH----HHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred HHHHHcCCCHHHH----HHHHHHHHcCCCHHHHHHH----HHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHH
Confidence 3344444455542 2334444544444444333 345666 78888888877764211 1223357
Q ss_pred HHHHHHHH----HhhHHHHHHHHHHHHHc
Q 012934 210 YLGKIRTI----QLEYTDAKESLLQAARK 234 (453)
Q Consensus 210 Y~G~i~~~----~~dy~~A~~~L~~A~~~ 234 (453)
.+|.+|.. .+|+.+|..+|..|...
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 78888888 89999999999999874
No 242
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=38.58 E-value=52 Score=27.63 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=34.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce---eEeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID---ATVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~---A~Id~~ 375 (453)
..+++.++||..+|++. ..+-..+.+|...|.|. +.+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSV----SAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEEeccChh
Confidence 47899999999999987 89999999999999995 345654
No 243
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=38.32 E-value=53 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=34.2
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 48 ~~~~~~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQ----SAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp TSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCcCHHHHHHHhCCCc----hhHHHHHHHHHHCCCEEeecCC
Confidence 67899999999999987 7899999999999999765554
No 244
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.19 E-value=45 Score=29.13 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=35.1
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~~ 376 (453)
..++|.++||.++|++. ..+-..+.+|...|.|.. .+|+.+
T Consensus 39 ~~~~s~~eLA~~lglS~----~tv~~rl~~L~~~G~I~~~~a~vd~~~ 82 (171)
T 2e1c_A 39 DGKAPLREISKITGLAE----STIHERIRKLRESGVIKKFTAIIDPEA 82 (171)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCCCCCCGGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeeeEEECHHH
Confidence 47999999999999987 889999999999999953 466643
No 245
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.86 E-value=44 Score=28.16 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee---EeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA---TVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A---~Id~~ 375 (453)
..++|.++||..+|++. ..+-..+.+|...|.|.. .+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 19 DGKAPLREISKITGLAE----STIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp CTTCCHHHHHHHHCSCH----HHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 47899999999999987 889999999999999953 46654
No 246
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=36.44 E-value=1.8e+02 Score=23.90 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=38.5
Q ss_pred hcccc-cHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 331 SYSRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 331 ~YsrI-sL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
+=.++ |..++|..+|++- .-|-.-+..|..+|.|. .-+.+|+......
T Consensus 34 pG~~LPser~La~~~gVSr----~tVReAl~~L~~eGlv~--~~~g~G~~V~~~~ 82 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNP----NTVSKAYQELERQEVII--TVKGKGTFIANQT 82 (134)
T ss_dssp TTCEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECCCS
T ss_pred CCCCCccHHHHHHHHCCCH----HHHHHHHHHHHHCCcEE--EEcCcEEEEeCCc
Confidence 34789 6889999999997 77888899999999995 4466888776543
No 247
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=36.35 E-value=38 Score=29.51 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=39.3
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
..++.++||..++++. .-++.++.+|-..|.|..+=-...||.--...
T Consensus 27 ~~~s~~~IA~~~~is~----~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHLNP----VMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTSCG----GGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 4699999999999998 89999999999999997664445577655443
No 248
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=35.42 E-value=89 Score=24.63 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=35.4
Q ss_pred cccccHHHHHHHh-CCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 332 YSRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L-~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
...+++.+|+..+ +++. ..+-..|..|...|.|....+..+
T Consensus 25 ~~~~~~~eLa~~l~~is~----~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQ----KMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp TCCBCHHHHHHHCTTSCH----HHHHHHHHHHHHTTSEEEEEECSS
T ss_pred hCCCCHHHHHHHhcCCCH----HHHHHHHHHHHHCCCEEEeecCCC
Confidence 4679999999999 9987 788999999999999987776543
No 249
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=35.42 E-value=57 Score=26.51 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
-..++.++||..++++. ..+=.+|..|...|+|.-.-++.
T Consensus 39 ~~~~t~~ela~~l~~~~----stvs~~l~~L~~~G~v~r~~~~~ 78 (152)
T 1ku9_A 39 DKPLTISDIMEELKISK----GNVSMSLKKLEELGFVRKVWIKG 78 (152)
T ss_dssp SSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEecCC
Confidence 36799999999999987 78999999999999997665543
No 250
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=35.37 E-value=39 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHh
Q 012934 210 YLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAII 252 (453)
Q Consensus 210 Y~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIl 252 (453)
..|.-.+.++++..|..||..|+.=||+ .+....+|+.-+|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q--P~~LL~i~q~TlP 65 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ--PQQLLQVLQQTLP 65 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC--HHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHhhCC
Confidence 3788888899999999999999998876 3445555555443
No 251
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.10 E-value=78 Score=26.52 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-|..+
T Consensus 59 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D 98 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKP----QSANKILQDLLANGWIEKAPDPTH 98 (162)
T ss_dssp TTCCHHHHHHHHTSCG----GGHHHHHHHHHHTTSEEEEECCSS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCcCeEecCCCCc
Confidence 5799999999999998 789999999999999976666543
No 252
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=35.07 E-value=3.3e+02 Score=26.67 Aligned_cols=112 Identities=15% Similarity=0.040 Sum_probs=56.4
Q ss_pred ccCHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhhccCccchHHHHHH
Q 012934 97 KKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYEL----TGDLAEIRGNLLALHRIATLRHDELGQETLLNL 172 (453)
Q Consensus 97 ~~~~~~A~~~~~~lv~~l~~~~~r~~d~l~ak~~~~~~~~~e~----~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~ 172 (453)
.+++++|..+..+.++. -+ +..++.+..++.. .++..++...+..+ ....+...+..
T Consensus 92 ~~~~~~A~~~~~~a~~~---~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a----~~~~~~~a~~~---- 152 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK---GL--------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLA----AEQGRDSGQQS---- 152 (490)
T ss_dssp CCCHHHHHHHHHHHHHT---TC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----HHTTCHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHC---CC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----HHCCCHHHHHH----
Confidence 67899998877666532 11 1123344444444 34555554444333 22222222222
Q ss_pred HHHHHHh----cCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Q 012934 173 LLRNYLH----YNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAAR 233 (453)
Q Consensus 173 llr~Yl~----~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~ 233 (453)
+-..|.. .++++.|.....+..-. ....-++.+|.+|.. .+++.+|..+|..|..
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 2234554 56666666655543111 123345566666665 6666777766666665
No 253
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.07 E-value=65 Score=26.12 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=34.8
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
....++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 49 ~~~~~t~~~la~~l~~s~----~~vs~~l~~L~~~glv~r~~~~~ 89 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEG----PTLARLLDGLESQGLVRRLAVAE 89 (146)
T ss_dssp CSSCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCBT
T ss_pred cCCCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCeeecCCCc
Confidence 356899999999999987 88999999999999997665543
No 254
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=35.02 E-value=1e+02 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=31.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++.++||..++++. ..+-.+|.+|+..|.|.-.-+
T Consensus 61 ~~~~t~~ela~~l~is~----~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDK----VAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp STTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC---
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeecC
Confidence 46799999999999987 889999999999999965443
No 255
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.02 E-value=59 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 48 ~~~~~~~~la~~l~i~~----~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRS----SNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp TSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCEeeCCCC
Confidence 46899999999999987 8899999999999999655443
No 256
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=34.80 E-value=43 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=36.9
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
..++.++||..++++. .-++.++..|...|.|...=- ..||.--.+.
T Consensus 29 ~~~~~~~iA~~~~i~~----~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNP----VVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 4689999999999997 899999999999999975443 4566655544
No 257
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=34.12 E-value=45 Score=25.97 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=29.4
Q ss_pred ccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 335 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 335 IsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
++..+||..||++. ..+-..|.+|-.+|+|.
T Consensus 31 ~sa~eLAk~LgiSk----~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 31 ATAAQLTRQLNMEK----REVNKALYDLQRSAMVY 61 (82)
T ss_dssp EEHHHHHHHSSSCH----HHHHHHHHHHHHHTSSE
T ss_pred CCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE
Confidence 99999999999998 89999999999999994
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.06 E-value=1.4e+02 Score=33.88 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 232 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~ 232 (453)
++...++.+.++.+..+..-.. .+...+ |..|++++..|+|.+|.++|..|-
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIAV--YLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHHH--HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHHH--HHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4455667778887777665321 112222 889999999999999999998874
No 259
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.65 E-value=38 Score=27.51 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=33.5
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
.++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 47 ~~t~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~ 84 (139)
T 3eco_A 47 GLTQNDIAKALQRTG----PTVSNLLRNLERKKLIYRYVDAQ 84 (139)
T ss_dssp CEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCC
T ss_pred CcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCCC
Confidence 799999999999997 88999999999999997665544
No 260
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=33.41 E-value=85 Score=25.23 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=33.5
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 44 ~~~~~~ela~~l~is~----~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 44 APLHQLALQERLQIDR----AAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCC
Confidence 5799999999999987 8899999999999999766554
No 261
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=32.94 E-value=53 Score=26.78 Aligned_cols=38 Identities=16% Similarity=0.434 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
.. ++.++||..++++. ..+-.+|.+|..+|+|.-.-|+
T Consensus 50 ~~-~t~~eLa~~l~~s~----~tvs~~l~~L~~~Glv~r~~~~ 87 (146)
T 3tgn_A 50 ES-LTNSELARRLNVSQ----AAVTKAIKSLVKEGMLETSKDS 87 (146)
T ss_dssp CC-CCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC----
T ss_pred CC-CCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEeccCC
Confidence 35 99999999999997 8899999999999999765543
No 262
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=32.39 E-value=59 Score=26.53 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=28.4
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-+..
T Consensus 50 ~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~~~~ 88 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDK----ALITRKIRELEGRNLVRRERNPS 88 (142)
T ss_dssp TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC-----
T ss_pred CCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEeeccCCC
Confidence 4799999999999998 78999999999999996555543
No 263
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=32.27 E-value=60 Score=27.39 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=38.6
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecccc
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETG 385 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~~ 385 (453)
... +.++||..++++. .-++.++.+|...|.|..+=- ..||.--....
T Consensus 22 ~~~-s~~~IA~~~~i~~----~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p~ 69 (145)
T 1xd7_A 22 EKT-SSEIIADSVNTNP----VVVRRMISLLKKADILTSRAG-VPGASLKKDPA 69 (145)
T ss_dssp SCC-CHHHHHHHHTSCH----HHHHHHHHHHHHTTSEECCSS-SSSCEESSCGG
T ss_pred CCC-CHHHHHHHHCcCH----HHHHHHHHHHHHCCceEeecC-CCCceecCCHH
Confidence 345 9999999999998 899999999999999976554 56776555443
No 264
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.02 E-value=76 Score=25.46 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 51 ~~~t~~ela~~l~~~~----~tvs~~l~~L~~~glv~r~~~~~d 90 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDA----ATIKGVVERLDKRGLIQRSADPDD 90 (140)
T ss_dssp SSBCHHHHHHHTTCCH----HHHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCCCC
Confidence 4799999999999987 889999999999999976655443
No 265
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=32.01 E-value=92 Score=24.90 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=33.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|..|...|.|.-.-+.
T Consensus 45 ~~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~ 83 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVP----SNMTTMIQRMKRDGYVMTEKNP 83 (139)
T ss_dssp SCSEEHHHHHHHCSSCC----TTHHHHHHHHHHTTSEEEEECS
T ss_pred cCCcCHHHHHHHHCCCh----hHHHHHHHHHHHCCCeeeccCC
Confidence 45799999999999998 7889999999999999765544
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.44 E-value=46 Score=37.29 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012934 173 LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAA 232 (453)
Q Consensus 173 llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~ 232 (453)
++..++..+.++.+..++.-.+ .+-..+ |..|++++..|++.+|.++|..|-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAV--YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHH--HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHH--HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4556677888888887776532 112233 889999999999999999998874
No 267
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.20 E-value=89 Score=25.38 Aligned_cols=54 Identities=13% Similarity=-0.094 Sum_probs=37.8
Q ss_pred HHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHc
Q 012934 175 RNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI----QLEYTDAKESLLQAARK 234 (453)
Q Consensus 175 r~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~----~~dy~~A~~~L~~A~~~ 234 (453)
..|.....++.|.....+..- .....=.|.+|.+|.. ..|+.+|..+|..|...
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACE------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHc------CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 456666677777766665311 1223445778888887 89999999999999873
No 268
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=30.55 E-value=87 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=35.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCc
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 377 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G 377 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+..++
T Consensus 41 ~~~~~~~ela~~l~~s~----~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDK----GTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp STTCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeecCCCCc
Confidence 36799999999999987 8899999999999999766665443
No 269
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=30.33 E-value=67 Score=26.39 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
-.++|.++||..+|++. ..+-..+..|...|.|..
T Consensus 16 ~~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISE----TAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp CTTCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSSCC
T ss_pred cCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEec
Confidence 46899999999999987 889999999999999953
No 270
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=30.19 E-value=3.1e+02 Score=24.86 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=56.8
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHH
Q 012934 137 YELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRT 216 (453)
Q Consensus 137 ~e~~~~l~~~r~~l~~~~rta~~~~~~~~~~~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~ 216 (453)
+-..|+..++...+-.++..... . .-....+-+.|+..|+++.|...+.+..- ..| +........|..+.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~----~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p--~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQ----N--GEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQ--DTRYQGLVAQIELL 196 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTS----C--HHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGC--SHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc----c--hhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhc--chHHHHHHHHHHHH
Confidence 33467777777766666543211 1 11223355678888999999888887531 111 12233445566666
Q ss_pred HHhhHHHHHHHHHHHHHcCCcC
Q 012934 217 IQLEYTDAKESLLQAARKAPVA 238 (453)
Q Consensus 217 ~~~dy~~A~~~L~~A~~~~p~~ 238 (453)
.++++.+|...|..++...|..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTC
T ss_pred hhcccCccHHHHHHHHhcCCcc
Confidence 7788888888888888866653
No 271
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=30.17 E-value=58 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=33.2
Q ss_pred cccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 334 RISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
.++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 50 ~~~~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~ 87 (141)
T 3bro_A 50 EVLQRDLESEFSIKS----STATVLLQRMEIKKLLYRKVSGK 87 (141)
T ss_dssp CCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSS
T ss_pred CcCHHHHHHHHCCCc----chHHHHHHHHHHCCCEEeeCCCc
Confidence 699999999999987 88999999999999997665543
No 272
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=30.07 E-value=53 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=32.7
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
..++..+||..+|++. ..+-..+..|...|.|...-+
T Consensus 37 ~~~s~~eLa~~lgis~----stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNL----TTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999987 889999999999999976544
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.82 E-value=1.9e+02 Score=22.28 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHHHHHHhhc
Q 012934 80 PELEIYCYLLVLIFLID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTG 141 (453)
Q Consensus 80 p~~e~~~~ll~~~~l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~~d~l~ak~~~~~~~~~e~~~ 141 (453)
|...-.+-++..---.| .|+|++|+.+....+..+... |...-+.+..|+--|..|+-++..
T Consensus 11 ~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~ 78 (86)
T 4a5x_A 11 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKK 78 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334 589999999999999875433 233456777788888777766544
No 274
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.79 E-value=78 Score=25.47 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=34.4
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 49 ~~~t~~ela~~l~~s~----~~vs~~l~~Le~~glv~r~~~~~d 88 (142)
T 2fbi_A 49 GEMESYQLANQACILR----PSMTGVLARLERDGIVRRWKAPKD 88 (142)
T ss_dssp CSEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeecCCCC
Confidence 5699999999999987 889999999999999976665443
No 275
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=29.71 E-value=1e+02 Score=24.68 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=37.0
Q ss_pred ccc-cHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEec
Q 012934 333 SRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 382 (453)
Q Consensus 333 srI-sL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~ 382 (453)
.++ |..++|..+|++. .-+-..+..+..+|.|. ..+.+|+....
T Consensus 31 ~~lPs~~~La~~~~vSr----~tvr~al~~L~~~Gli~--~~~~~G~~V~~ 75 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINP----LTVSKAYQSLLDDNVIE--KRRGLGMLVKA 75 (113)
T ss_dssp CEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECT
T ss_pred CcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE--EecCCeEEEeC
Confidence 688 8999999999987 78899999999999984 44667877655
No 276
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=29.66 E-value=89 Score=25.42 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=33.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..
T Consensus 44 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~ 82 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPK----QTVSGVCKTLAGQGLIEWQEGEQ 82 (145)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECCCSS
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeccCCC
Confidence 4699999999999997 88999999999999996554433
No 277
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.61 E-value=77 Score=25.75 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-|..
T Consensus 50 ~~~t~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~ 88 (143)
T 3oop_A 50 EPISQKEIALWTKKDT----PTVNRIVDVLLRKELIVREISTE 88 (143)
T ss_dssp SSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC---
T ss_pred CCcCHHHHHHHHCCCH----hhHHHHHHHHHHCCCeeccCCCc
Confidence 6799999999999987 88999999999999997655443
No 278
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=29.21 E-value=1.2e+02 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.1
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEe
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV 372 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~I 372 (453)
..++..+|+..+|++. ..+-..+..|...|.|...-
T Consensus 35 ~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 35 QELSVGELCAKLQLSQ----SALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 6789999999999987 88999999999999996553
No 279
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=29.06 E-value=2e+02 Score=23.63 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=33.8
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-|..+
T Consensus 63 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D 102 (159)
T 3s2w_A 63 DGINQESLSDYLKIDK----GTTARAIQKLVDEGYVFRQRDEKD 102 (159)
T ss_dssp CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC--
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecCCCC
Confidence 6799999999999997 889999999999999976665443
No 280
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=28.95 E-value=95 Score=25.37 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=33.6
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 52 ~~~~t~~ela~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 52 TPGATAPQLGAALQMKR----QYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp STTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeecCCc
Confidence 35799999999999987 8899999999999999765543
No 281
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=28.67 E-value=1.9e+02 Score=23.48 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
...++.++||..++++. ..+-.+|..|...|.|.-
T Consensus 20 ~~~~~~~ela~~l~vs~----~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 20 KGYARVSDIAEALAVHP----SSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HSSCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEE
Confidence 46799999999999997 788999999999999953
No 282
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=28.40 E-value=45 Score=27.30 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=33.0
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-|+.+
T Consensus 48 ~~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~~~~D 88 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDS----GTLTPLLKKLEKKDYVVRTREEKD 88 (140)
T ss_dssp TCEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC----
T ss_pred cCCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCeEecCCCCC
Confidence 35799999999999987 889999999999999976655443
No 283
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=28.28 E-value=86 Score=25.77 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
..++.++||..++++. ..+-.+|.+|+..|.|.-
T Consensus 54 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 54 PGISVADLTKRLIITG----SSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 5699999999999987 889999999999999975
No 284
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=28.06 E-value=53 Score=27.32 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=31.9
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+
T Consensus 60 ~~~~~~~ela~~l~i~~----~tvs~~l~~Le~~Gli~r~~~ 97 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTN----GNVSGLVNRLIKDGMVVKAMS 97 (160)
T ss_dssp TTCEEHHHHHHHCSSCC----SCHHHHHHHHHHHTSEEEC--
T ss_pred CCCCCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecC
Confidence 46799999999999998 688899999999999965444
No 285
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.05 E-value=1.1e+02 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=33.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 42 ~~~t~~~la~~l~~s~----~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDR----TTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred cCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeecCC
Confidence 5789999999999987 8899999999999999765544
No 286
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.96 E-value=98 Score=26.14 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=33.9
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-+..
T Consensus 58 ~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~ 96 (168)
T 2nyx_A 58 GPINLATLATLLGVQP----SATGRMVDRLVGAELIDRLPHPT 96 (168)
T ss_dssp CSEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEeccCCC
Confidence 5799999999999997 88999999999999997665543
No 287
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=27.86 E-value=1.1e+02 Score=24.94 Aligned_cols=38 Identities=16% Similarity=0.412 Sum_probs=33.3
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 55 ~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 55 GDLTVGELSNKMYLAC----STTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCC
Confidence 5799999999999987 8899999999999999765544
No 288
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.57 E-value=99 Score=24.95 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=35.0
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 377 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G 377 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+..++
T Consensus 46 ~~~~~~~la~~l~~s~----~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 46 GPKRPGELSVLLGVAK----STVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCCCCC
Confidence 5799999999999987 8899999999999999776665443
No 289
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=27.34 E-value=62 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHcCCc
Q 012934 205 CRYLFYLGKIRTIQ-----------LEYTDAKESLLQAARKAPV 237 (453)
Q Consensus 205 v~Y~YY~G~i~~~~-----------~dy~~A~~~L~~A~~~~p~ 237 (453)
..-+|.+|..|... ++|.+|..+|..|+.--|.
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 33467888888876 4999999999999997675
No 290
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=27.32 E-value=5.9e+02 Score=27.09 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh------ccCcc----------chHHHHHHHHHHHHhcCChHHHHHHHhc
Q 012934 129 LYFYYSLCYELTGDLAEIRGNLLALHRIATL------RHDEL----------GQETLLNLLLRNYLHYNLYDQAEKLRSK 192 (453)
Q Consensus 129 ~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~------~~~~~----------~~~~l~n~llr~Yl~~~~~~~a~~li~~ 192 (453)
+|+.++...|..++.+.+|..+-.++..... .+.+. ....+.....+...+.+..+.|..++..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888899999999887777643210 01110 1111222233444456788899998877
Q ss_pred CC-c-CccCChhhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHHhcCCCCC-hhhhhh
Q 012934 193 AP-R-FEAHSNQQFCRYLFYLGKIRTI-QLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPE-RTVFMQ 268 (453)
Q Consensus 193 ~~-~-p~~~~~~~~v~Y~YY~G~i~~~-~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~LL~G~iP~-~~ll~~ 268 (453)
+. . |... .-.|.. .+.+-.. .+++..|..-|+.++.++|... .++...+.+.+ -.|++.. +.+|..
T Consensus 460 A~~~~~~~~----~~lyi~-~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~-~~w~~y~~fe~----~~~~~~~AR~lfer 529 (679)
T 4e6h_A 460 CRRLKKLVT----PDIYLE-NAYIEYHISKDTKTACKVLELGLKYFATDG-EYINKYLDFLI----YVNEESQVKSLFES 529 (679)
T ss_dssp HHHTGGGSC----THHHHH-HHHHHHTTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHH----HHTCHHHHHHHHHH
T ss_pred HHHhcCCCC----hHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHCCCch-HHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 52 2 3221 112222 2333332 3568999999999999888642 33333333222 1344321 222221
Q ss_pred hh--------hhhhhhhHHHHHHHHhcCCHHHHHHHHHhcchhhccCc
Q 012934 269 KG--------MEKALRPYFELTNAVRIGDLELFKSVAEKFSSTFSSDR 308 (453)
Q Consensus 269 ~~--------l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg 308 (453)
-. .......|..+- -+.||+....++.++....|-++.
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE--~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFE--SKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHH--HHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 10 001112222222 245888887777777777776655
No 291
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.30 E-value=2e+02 Score=23.27 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEe
Q 012934 335 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATV 372 (453)
Q Consensus 335 IsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~I 372 (453)
++..+||..++++. ..|-..|..|...|.|.-.-
T Consensus 43 ~t~~eLa~~l~~s~----sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 43 IDTDALSKSLKLDV----STVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeeC
Confidence 99999999999987 89999999999999996543
No 292
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=27.18 E-value=86 Score=25.56 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=31.5
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+
T Consensus 52 ~~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~ 89 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDK----AAVSRTVKKLEEKKYIEVNGH 89 (148)
T ss_dssp SSSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC---
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeecC
Confidence 35899999999999987 889999999999999965444
No 293
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.11 E-value=2.1e+02 Score=21.86 Aligned_cols=37 Identities=5% Similarity=0.239 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...+..+|+..+|++. ..+-..+..|...|.|...-+
T Consensus 35 ~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQ----PTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp CCBCHHHHHHHHTCCT----THHHHHHHHHHHTTSEEEECS
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999998 789999999999999976544
No 294
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=26.74 E-value=70 Score=25.50 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=34.2
Q ss_pred ccccHHHHHHHh-CCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L-~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++..+|+..+ +++. ..+-..|..|...|.|.-..+..
T Consensus 34 ~~~~~~eLa~~l~~is~----~tvs~~L~~Le~~GlI~r~~~~~ 73 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQ----RVLTDRLREMEKDGLVHRESFNE 73 (112)
T ss_dssp SCBCHHHHHHHSTTCCH----HHHHHHHHHHHHHTSEEEEEECC
T ss_pred CCCCHHHHHHHhccCCH----HHHHHHHHHHHHCCCEEEeecCC
Confidence 578999999999 9987 88999999999999997776643
No 295
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=26.73 E-value=2.2e+02 Score=21.97 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
..++..+||..++++. ..+-..+..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~----~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSR----QAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeEEec
Confidence 5689999999999987 789999999999999965544
No 296
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=26.43 E-value=1.1e+02 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=28.6
Q ss_pred ccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCc
Q 012934 335 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAI 368 (453)
Q Consensus 335 IsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I 368 (453)
++.++||..++++. ..+-.+|..|...|+|
T Consensus 31 ~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSPH----SYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSCH----HHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcCH----HHHHHHHHHHHHCcCc
Confidence 89999999999997 8899999999999999
No 297
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=26.38 E-value=1.1e+02 Score=25.15 Aligned_cols=39 Identities=8% Similarity=0.250 Sum_probs=33.6
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 49 ~~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKP----SAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp HSEEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeecCCC
Confidence 35789999999999987 8899999999999999765554
No 298
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=26.34 E-value=67 Score=28.02 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=35.4
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
...++.++||..++++. ..+-.+|.+|...|+|.-.-++.+
T Consensus 55 ~~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~D 95 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSK----QNINRLVANLEKNGYVDVIPSPHD 95 (189)
T ss_dssp GGGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccCCCC
Confidence 35799999999999997 789999999999999987766544
No 299
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=26.03 E-value=74 Score=26.22 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=31.8
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
...++.++||..++++. ..+-.+|.+|...|+|.-.-|+.
T Consensus 53 ~~~~~~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~ 92 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSS----NTLTPMLKRLEQSGWVKRERQQS 92 (149)
T ss_dssp SSSEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEC-----
T ss_pred CCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeCCCCC
Confidence 36799999999999997 88999999999999997555543
No 300
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.02 E-value=4.7e+02 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcchhhccCc
Q 012934 281 LTNAVRIGDLELFKSVAEKFSSTFSSDR 308 (453)
Q Consensus 281 L~~Av~~Gdl~~f~~~l~~~~~~f~~Dg 308 (453)
|+.++..|+...|....++|+....+|+
T Consensus 251 Lllt~q~~~~~lF~~L~~~Y~~~l~rd~ 278 (336)
T 3lpz_A 251 LLLSVQKGSPDLFRQLKSKYEANLNELN 278 (336)
T ss_dssp HHHHHHSCCHHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcH
Confidence 6678888999999999999988887775
No 301
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.75 E-value=1.1e+02 Score=25.29 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=33.2
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 64 ~~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQ----STLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp SCSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEecCCC
Confidence 35799999999999987 8899999999999999765543
No 302
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=25.59 E-value=32 Score=26.49 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.7
Q ss_pred cccHHHHHHHhCCCCCCChHH-HHHHHHHhHHcCCce
Q 012934 334 RISLADVAKKLRLDSANPVAD-AESIVSKAIRDGAID 369 (453)
Q Consensus 334 rIsL~dIa~~L~l~~~~d~~e-aE~iva~mI~dG~I~ 369 (453)
.++.++||..++++. .. +-.+|.+|...|+|.
T Consensus 30 ~~t~~eLa~~l~is~----~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSE----KTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCH----HHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCc----hHHHHHHHHHHHHCCCee
Confidence 699999999999987 77 899999999999996
No 303
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.59 E-value=1.3e+02 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++..+||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 57 ~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~ 94 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTK----SNVTNVVDSLEKRGLVVREMDP 94 (154)
T ss_dssp CCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCC
Confidence 4799999999999987 7899999999999999765544
No 304
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.54 E-value=61 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=29.9
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
--|.+++++++.|++. ++|-..+.++=.+|.|.
T Consensus 24 GildI~~~a~kygV~k----deV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEK----QEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCH----HHHHHHHHHHHHCCCee
Confidence 4588999999999998 99999999999999983
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.42 E-value=1.4e+02 Score=31.27 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Q 012934 81 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMN-RRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATL 159 (453)
Q Consensus 81 ~~e~~~~ll~~~~l~d~~~~~~A~~~~~~lv~~l~~~~-~r~~d~l~ak~~~~~~~~~e~~~~l~~~r~~l~~~~rta~~ 159 (453)
+...-++.+.+-.++..+.|+.|..+..+.. |- ....+...++-+||.++++-..++..+|...|..++|.|..
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE-----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc-----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4455555566666677788988877755542 31 11223444677889999999999999999999999988754
Q ss_pred c
Q 012934 160 R 160 (453)
Q Consensus 160 ~ 160 (453)
.
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 3
No 306
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=25.32 E-value=1.1e+02 Score=23.66 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHhhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCc
Q 012934 328 ISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAI 368 (453)
Q Consensus 328 i~~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I 368 (453)
+...=+-++-.+||.++|++. .|+.+.+-.|=.+|.|
T Consensus 28 LkeaG~PlkageIae~~GvdK----KeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 28 LTEAGSPVKLAQLVKECQAPK----RELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHTSCEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHcCCc
Confidence 344557899999999999998 9999999999999987
No 307
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=25.31 E-value=75 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=34.2
Q ss_pred hhcccccHHHHHHHh-CCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEecc
Q 012934 330 ISYSRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKE 383 (453)
Q Consensus 330 ~~YsrIsL~dIa~~L-~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~ 383 (453)
..=|+.-+.||+..+ +... .+|-.+|..||.+|.+ .|.++..
T Consensus 17 ~~KskfYf~D~~k~~P~~k~----r~vKK~~~~LV~Eg~l--------eywSSGS 59 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMKQ----REVKKILTALVNDEVL--------EYWSSGS 59 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSCH----HHHHHHHHHHHHTTSE--------EEEEETT
T ss_pred cccccchHHHHHHHccccCH----HHHHHHHHHHHhcCce--------EEEecCC
Confidence 445788999999987 5554 8999999999999999 5666654
No 308
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=25.25 E-value=1e+02 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.0
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
...++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 59 ~~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 59 TDERSVSEIGERLYLDS----ATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp SCSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCc
Confidence 46799999999999987 8899999999999999766554
No 309
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=25.17 E-value=1.3e+02 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=32.7
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|...|.|.-.-+.
T Consensus 50 ~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 50 SPVNVKKVVTELALDT----GTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp SEEEHHHHHHHTTCCT----TTHHHHHHHHHHTTSEEEEECS
T ss_pred CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecCC
Confidence 5689999999999987 6888999999999999665553
No 310
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=25.17 E-value=4.6e+02 Score=25.10 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCcCchHhHHHHHHHHHhHHH-hcCCCCChhhhhhhh-hhhhh-hhHHHHHHHH
Q 012934 209 FYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRL-LLGEIPERTVFMQKG-MEKAL-RPYFELTNAV 285 (453)
Q Consensus 209 YY~G~i~~~~~dy~~A~~~L~~A~~~~p~~~~~~~~~alK~lIlv~L-L~G~iP~~~ll~~~~-l~~~l-~~Y~~L~~Av 285 (453)
|-.|+.+..++.|-+|+.+...|+.+ +.+ +.+ -.|..|+..++++-. +.+.+ +-|.+|+.
T Consensus 134 y~~~K~~l~~~~~ldAY~~vi~aLhh-------~Ar--------L~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~-- 196 (290)
T 3c18_A 134 FQDGRNLFSRGNYYDAYTHVHHALHH-------LAR--------LSVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL-- 196 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------HHH--------HHHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT--
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHH-------HHH--------hheeccCCcCchhHHHHHHhcCHHHHHHHHHHhc--
Confidence 56788899999999999999999874 111 122 379999998887741 11111 11222221
Q ss_pred hcCCHHHHHHHHHhcchhhccCccHHHHHHHHHHHHHHHHHHHHh--------hcccccHHHHHHHhCCCC-CCChHHHH
Q 012934 286 RIGDLELFKSVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISI--------SYSRISLADVAKKLRLDS-ANPVADAE 356 (453)
Q Consensus 286 ~~Gdl~~f~~~l~~~~~~f~~Dg~~~Lv~rLr~~vir~~irki~~--------~YsrIsL~dIa~~L~l~~-~~d~~eaE 356 (453)
...++.+=-+ ++-..-...+-.+++..+. -=...|+.+|-.--.+.. . -+.|
T Consensus 197 s~E~lekrie----------------lllla~Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~~~~~---idle 257 (290)
T 3c18_A 197 SEETLEQRIH----------------LALIGLEHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEESRLTELK---VDLG 257 (290)
T ss_dssp CCSCHHHHHH----------------HHHHHHHHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCGGGGGGH---HHHH
T ss_pred CcccHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCccccccc---CCHH
Confidence 1222221111 1111111222223332222 124678888887665554 2 5789
Q ss_pred HHHHHhHHcCCceeEeeC
Q 012934 357 SIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 357 ~iva~mI~dG~I~A~Id~ 374 (453)
-++-.++..|.|.-.--.
T Consensus 258 ~iL~~Lv~k~lI~~~~~~ 275 (290)
T 3c18_A 258 SLVDFFIRKGLIRISYQR 275 (290)
T ss_dssp HHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHcCCeEEeccc
Confidence 999999999999644333
No 311
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.01 E-value=1e+02 Score=25.06 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.2
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
.-..+++++||..++++. ..+-..+..|...|+|.
T Consensus 28 ~~~~~s~~ela~~l~is~----~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAP----SSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCCh----HHHHHHHHHHHHCCCEE
Confidence 346799999999999987 78999999999999985
No 312
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.81 E-value=1.9e+02 Score=29.51 Aligned_cols=61 Identities=10% Similarity=-0.060 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHH
Q 012934 168 TLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIR--TIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 168 ~l~n~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~--~~~~dy~~A~~~L~~A~~ 233 (453)
...|.+++.|.+.|.++.|..+++.+.-- .+.+ +..+ |...|. +..+++.+|.+.|.....
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~P-d~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQP-RLRS---YGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCC-CHHH---HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ccce---ehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45678889999999999999998864210 0111 2223 334443 346788888887776654
No 313
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=24.77 E-value=1.6e+02 Score=22.87 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
..+++.+||..+|++. ..+-..+..|...|.|...-+
T Consensus 38 ~~~~~~ela~~l~is~----stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQ----SNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999987 789999999999999965543
No 314
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.75 E-value=1.6e+02 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=33.8
Q ss_pred hc-ccCHHHHHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHHHHHHhh
Q 012934 95 ID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELT 140 (453)
Q Consensus 95 ~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~~d~l~ak~~~~~~~~~e~~ 140 (453)
.| .|+|.+|+.+-...++.+... |....+.+..|+--|..|+.++.
T Consensus 29 ~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK 80 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLK 80 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 489999999998888775432 23456778888888888876653
No 315
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=24.73 E-value=90 Score=25.74 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=32.3
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEee
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVD 373 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id 373 (453)
...++.++||..++++. ..+-.+|.+|...|+|.-.-+
T Consensus 55 ~~~~t~~ela~~l~i~~----~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQ----SRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp CSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC-
T ss_pred CCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccC
Confidence 35799999999999987 889999999999999965444
No 316
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.72 E-value=1e+02 Score=25.39 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=37.0
Q ss_pred ccc-cHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEec
Q 012934 333 SRI-SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 382 (453)
Q Consensus 333 srI-sL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~ 382 (453)
.++ |..++|..+|++. .-+-..+..|..+|.|. ..+.+|+....
T Consensus 33 ~~lPse~~La~~~~vSr----~tvr~Al~~L~~~Gli~--~~~g~G~~V~~ 77 (126)
T 3by6_A 33 DQLPSVRETALQEKINP----NTVAKAYKELEAQKVIR--TIPGKGTFITG 77 (126)
T ss_dssp CEECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECS
T ss_pred CcCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEE--EecCCeEEEcc
Confidence 688 9999999999986 78888999999999994 45667877654
No 317
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.70 E-value=1.6e+02 Score=22.49 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=36.8
Q ss_pred hc-ccCHHHHHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHHHHHHhhcCH
Q 012934 95 ID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 143 (453)
Q Consensus 95 ~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~~d~l~ak~~~~~~~~~e~~~~l 143 (453)
.| .|+|.+|+.+-...++.+... |....+.+..|+--|..|+.++...+
T Consensus 21 ~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35 489999999998888775432 33456788889988988888876544
No 318
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=24.69 E-value=69 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.7
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|..+|+|.-.-+.
T Consensus 53 ~~~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDP----SQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp TCCCSHHHHHHHTCCH----HHHHHHHHHHHTTTSEEC----
T ss_pred CCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeeCCc
Confidence 3689999999999997 8899999999999999654443
No 319
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.66 E-value=1.3e+02 Score=24.59 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=36.8
Q ss_pred ccccc-HHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEec
Q 012934 332 YSRIS-LADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSK 382 (453)
Q Consensus 332 YsrIs-L~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~ 382 (453)
-.++| ..++|..+|++. .-+-.-+..|..+|.|. ..+.+|+....
T Consensus 34 g~~Lps~~~La~~~~vSr----~tvr~Al~~L~~~G~i~--~~~g~G~~V~~ 79 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNP----NTVSRAYQELERAGYIY--AKRGMGSFVTS 79 (125)
T ss_dssp TCBCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEE--EETTTEEEECC
T ss_pred CCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCeEE--EecCCEEEEec
Confidence 37885 999999999987 78889999999999994 34557877654
No 320
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.50 E-value=64 Score=26.91 Aligned_cols=40 Identities=10% Similarity=0.374 Sum_probs=33.7
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
..++.++||..++++. ..+-.+|.+|...|+|.=.-|..+
T Consensus 50 ~~~t~~eLa~~l~~~~----~tvs~~v~~Le~~Glv~r~~~~~D 89 (147)
T 4b8x_A 50 GELPMSKIGERLMVHP----TSVTNTVDRLVRSGLVAKRPNPND 89 (147)
T ss_dssp GEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC--
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHhCCCEEEeecCCc
Confidence 4599999999999998 889999999999999976666544
No 321
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=24.21 E-value=1.2e+02 Score=23.78 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred ccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCcEEEeccc
Q 012934 335 ISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKET 384 (453)
Q Consensus 335 IsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G~v~~~~~ 384 (453)
+..++||..++++. ..+..++..+...|.|.-. ..||.-....
T Consensus 21 ~~~t~La~~~~ls~----~~~~~~l~~L~~~GLI~~~---~~~~~LT~kG 63 (95)
T 1r7j_A 21 SPKTRIMYGANLSY----ALTGRYIKMLMDLEIIRQE---GKQYMLTKKG 63 (95)
T ss_dssp BCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE---TTEEEECHHH
T ss_pred CCHHHHHHHhCcCH----HHHHHHHHHHHHCCCeEEE---CCeeEEChhH
Confidence 99999999999998 8999999999999999544 2454444433
No 322
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.74 E-value=2.3e+02 Score=28.21 Aligned_cols=61 Identities=20% Similarity=0.079 Sum_probs=47.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012934 172 LLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAAR 233 (453)
Q Consensus 172 ~llr~Yl~~~~~~~a~~li~~~~~p~~~~~~~~v~Y~YY~G~i~~~~~dy~~A~~~L~~A~~ 233 (453)
.+-+.|++.|+++.|.+.+.... ....+..+.+..+.-.-+++...+||..|..++..|-.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46678889999999988877632 11234567888888888888899999999999888854
No 323
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=23.59 E-value=17 Score=34.60 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKL-RLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L-~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
.=|++.+|+.+| +++. +++...|-.|+.+|.|+.+||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~----~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSV----SSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp -------------------------------------------
T ss_pred cCCCHHHHHHHhcCCCH----HHHHHHHHHHHhCCEEeccccc
Confidence 457888999988 5765 8999999999999999999984
No 324
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.52 E-value=1.8e+02 Score=22.04 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHHHHHHhhcCH
Q 012934 83 EIYCYLLVLIFLID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 143 (453)
Q Consensus 83 e~~~~ll~~~~l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~~d~l~ak~~~~~~~~~e~~~~l 143 (453)
+-.+.++..---.| .++|++|+.+....++.+... +....+.+..|+--|..|+-++...+
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l 77 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHL 77 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333444 489999999999998874432 23345678888888888877665433
No 325
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.16 E-value=1e+02 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=32.3
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-|..
T Consensus 66 ~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~~ 104 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQ----STTSRTVDQLVDEGLAARSISDA 104 (161)
T ss_dssp SEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC---
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCcc
Confidence 5799999999999997 88999999999999996555433
No 326
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=22.98 E-value=49 Score=26.92 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=33.4
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHA 375 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~ 375 (453)
..++.++||..++++. ..+=.+|.+|...|+|.-.-|+.
T Consensus 52 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQ----PQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp SEEEHHHHHHHSSSHH----HHHHHHHHHHHHTTSSCCBCCSS
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCC
Confidence 5689999999999987 78999999999999996555543
No 327
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=22.88 E-value=2.5e+02 Score=22.50 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=31.7
Q ss_pred cccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeE
Q 012934 332 YSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 371 (453)
Q Consensus 332 YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~ 371 (453)
...+++.+|+..+|++. ..+-..+..|...|.|...
T Consensus 54 ~~~~s~~eLa~~l~is~----stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 54 DEELCVCDIANILGVTI----ANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEE
Confidence 36789999999999987 8899999999999999643
No 328
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.79 E-value=1.3e+02 Score=23.10 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=31.6
Q ss_pred hcccccHHHHHHHhCCCCCCChH-HHHHHHHHhHHcCCce
Q 012934 331 SYSRISLADVAKKLRLDSANPVA-DAESIVSKAIRDGAID 369 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~-eaE~iva~mI~dG~I~ 369 (453)
.-...+..+||..||++. . .|-..+..|-.+|.|.
T Consensus 22 ~~g~~ta~eiA~~Lgit~----~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 22 NVSDSSALNLAKNIGLTK----ARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HTCCEEHHHHHHHHCGGG----HHHHHHHHHHHHHTTSEE
T ss_pred HcCCcCHHHHHHHcCCCc----HHHHHHHHHHHHHCCCEE
Confidence 346788999999999998 7 9999999999999996
No 329
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=22.57 E-value=1.4e+02 Score=22.67 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=30.7
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
..++..+||..++++. ..+-..+..|...|.|..
T Consensus 42 ~~~~~~eLa~~l~is~----~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSK----KQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp TTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEE
Confidence 5689999999999987 789999999999999964
No 330
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=22.55 E-value=1e+02 Score=25.24 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=32.0
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
....++.++||..++++. ..+-.+|.+|...|.|.-
T Consensus 48 ~~~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNK----AAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSCS----SHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 347899999999999998 789999999999999964
No 331
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=22.25 E-value=70 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 377 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G 377 (453)
..++.++||..++++. ..+-.+|.+|...|+|.-.-+..++
T Consensus 61 ~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRA----PDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---C----THHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEeecCCCCCC
Confidence 4799999999999998 7899999999999999776665543
No 332
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.09 E-value=2.8e+02 Score=21.55 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHHHHHHhhcCH
Q 012934 79 LPELEIYCYLLVLIFLID-KKRYNEAKACSSASIARLKNM-----NRRTVDVLAARLYFYYSLCYELTGDL 143 (453)
Q Consensus 79 ~p~~e~~~~ll~~~~l~d-~~~~~~A~~~~~~lv~~l~~~-----~~r~~d~l~ak~~~~~~~~~e~~~~l 143 (453)
.|..+-.+.++..---.| .++|++|+.+....++.+... |...-+.+..|+--|..|+.++...+
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l 79 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555556 489999999999988875433 23345678888888888877665443
No 333
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=21.84 E-value=1.6e+02 Score=26.11 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeE
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDAT 371 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~ 371 (453)
.+++.++||..+|++. ..+-..+..|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS~----stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTP----QTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 6899999999999987 8899999999999999776
No 334
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=21.81 E-value=2e+02 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=32.6
Q ss_pred ccccHHHH----HHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADV----AKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dI----a~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++| |..++++. ..+-.+|..|...|+|.-.-+.
T Consensus 21 ~~~~~~el~~~la~~l~is~----~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMST----ATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCH----HHHHHHHHHHHHTTSEEEEEET
T ss_pred CCcCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHCCCEEEEecC
Confidence 56899999 88889887 7899999999999999776665
No 335
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=21.77 E-value=86 Score=30.90 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=32.8
Q ss_pred hhcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 330 ISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 330 ~~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
.....+|-++||+.++|+. ..+-.++..|+.+|.|.-
T Consensus 26 ~~~~~~sr~~la~~~~ls~----~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAP----ASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCH----HHHHHHHHHHHHHTSEEE
T ss_pred HHcCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEEe
Confidence 3467899999999999998 899999999999999844
No 336
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=21.63 E-value=1.6e+02 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=34.5
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCCc
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANG 377 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~G 377 (453)
..++.++||..++++. ..+-.+|.+|..+|+|.=.-|..++
T Consensus 45 ~~~~~~eLa~~l~~~~----~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQ----PSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TTSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCcHHHHHHHHCcCH----HHHHHHHHHHHhCCCeEeecCCCCC
Confidence 4567789999999998 8899999999999999777766543
No 337
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.06 E-value=4.3e+02 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcC
Q 012934 171 NLLLRNYLHYNLYDQAEKLRSKA 193 (453)
Q Consensus 171 n~llr~Yl~~~~~~~a~~li~~~ 193 (453)
|.-|.+|+-.|+++.|-+++.++
T Consensus 93 n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 93 GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Confidence 55677888889999988876654
No 338
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=20.96 E-value=47 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.0
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeC
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDH 374 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~ 374 (453)
..++.++||..++++. ..+-.+|.+|..+|+|.-.-|.
T Consensus 56 ~~~t~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRG----ASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC---
T ss_pred CCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEeeCCC
Confidence 5799999999999998 7888999999999999644443
No 339
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=20.74 E-value=2.1e+02 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
..++..++|..++++. ..+-..|..|...|.|.-
T Consensus 53 ~~~~~~~la~~l~vs~----~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 53 GEARQVDMAARLGVSQ----PTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp SCCCHHHHHHHHTSCH----HHHHHHHHHHHHTTCEEE
T ss_pred CCcCHHHHHHHhCcCH----HHHHHHHHHHHHCCCEEE
Confidence 5689999999999987 788899999999998853
No 340
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.67 E-value=98 Score=30.86 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=32.5
Q ss_pred hcccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 331 SYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 331 ~YsrIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
....+|-.+||+.++|+. ..+-.++..|+.+|.|.-
T Consensus 50 ~~~~~sr~ela~~~gls~----~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 50 QKGPISRIDLSKESELAP----ASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHCSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE
T ss_pred HcCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 457899999999999998 899999999999999844
No 341
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.21 E-value=2e+02 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHHHhhc--ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCce
Q 012934 325 LRNISISY--SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAID 369 (453)
Q Consensus 325 irki~~~Y--srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~ 369 (453)
..+|...| .-.+..+++..++++. .++..++..+...|.|.
T Consensus 9 ~~~i~~~~~~~p~~~~~la~~~~~~~----~~~~~~l~~l~~~G~l~ 51 (121)
T 2pjp_A 9 WQKAEPLFGDEPWWVRDLAKETGTDE----QAMRLTLRQAAQQGIIT 51 (121)
T ss_dssp HHHHGGGCSSSCEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEE
Confidence 33444555 3567889999999987 89999999999999983
No 342
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.20 E-value=1.7e+02 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=30.2
Q ss_pred ccccHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCcee
Q 012934 333 SRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDA 370 (453)
Q Consensus 333 srIsL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A 370 (453)
...|.++||..+|+++ ..+-..+..|-.+|+|.-
T Consensus 23 ~~~s~~eia~~lgl~~----~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 23 YPPSVREIARRFRITP----RGALLHLIALEKKGYIER 56 (196)
T ss_dssp SCCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHcCCCc----HHHHHHHHHHHHCCCEEe
Confidence 3589999999999998 679999999999999954
No 343
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.02 E-value=86 Score=25.48 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.3
Q ss_pred cHHHHHHHhCCCCCCChHHHHHHHHHhHHcCCceeEeeCCC
Q 012934 336 SLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHAN 376 (453)
Q Consensus 336 sL~dIa~~L~l~~~~d~~eaE~iva~mI~dG~I~A~Id~~~ 376 (453)
+.++||..++++. ..+-.+|.+|...|.|.-.-+..+
T Consensus 52 ~~~~la~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D 88 (144)
T 3f3x_A 52 SMVYLANRYFVTQ----SAITAAVDKLEAKGLVRRIRDSKD 88 (144)
T ss_dssp EHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEeccCCCC
Confidence 9999999999997 789999999999999976666544
Done!