Query 012936
Match_columns 453
No_of_seqs 310 out of 1872
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 4E-111 8E-116 838.5 35.4 338 105-444 9-352 (363)
2 TIGR00020 prfB peptide chain r 100.0 6E-107 1E-111 825.8 44.7 362 83-445 3-364 (364)
3 PRK00578 prfB peptide chain re 100.0 4E-106 8E-111 821.3 43.9 363 83-446 3-365 (367)
4 PRK06746 peptide chain release 100.0 8E-104 2E-108 791.4 38.9 325 119-444 1-325 (326)
5 PRK07342 peptide chain release 100.0 6E-104 1E-108 795.6 37.6 329 118-447 2-330 (339)
6 PRK05589 peptide chain release 100.0 3E-103 7E-108 787.9 38.8 324 119-444 1-324 (325)
7 TIGR00019 prfA peptide chain r 100.0 1.1E-99 2E-104 771.4 40.7 335 106-444 10-349 (360)
8 PRK00591 prfA peptide chain re 100.0 1.3E-98 3E-103 763.5 41.5 337 106-445 9-350 (359)
9 PRK08787 peptide chain release 100.0 1.3E-97 3E-102 742.0 34.8 303 141-445 2-304 (313)
10 KOG2726 Mitochondrial polypept 100.0 1.5E-85 3.3E-90 665.5 30.6 324 113-447 51-379 (386)
11 COG1186 PrfB Protein chain rel 100.0 3.1E-80 6.6E-85 596.0 19.9 238 206-444 1-238 (239)
12 TIGR03072 release_prfH putativ 100.0 7.4E-67 1.6E-71 494.7 24.8 197 206-408 1-198 (200)
13 PRK08179 prfH peptide chain re 100.0 3.1E-66 6.7E-71 490.5 23.5 196 206-407 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 1E-34 2.2E-39 253.3 10.0 109 308-417 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 8.7E-30 1.9E-34 222.7 12.2 110 164-273 2-115 (115)
16 PRK09256 hypothetical protein; 99.8 4.1E-21 8.9E-26 173.5 7.6 69 310-378 7-99 (138)
17 KOG3429 Predicted peptidyl-tRN 99.5 2.6E-14 5.6E-19 131.7 6.3 69 310-378 34-127 (172)
18 PRK10636 putative ABC transpor 89.2 2.1 4.6E-05 47.7 9.9 55 89-145 558-614 (638)
19 PRK11147 ABC transporter ATPas 82.3 5 0.00011 44.7 8.4 47 96-144 570-617 (635)
20 PRK11546 zraP zinc resistance 73.9 22 0.00047 33.2 8.5 60 78-144 45-104 (143)
21 PF10498 IFT57: Intra-flagella 73.0 52 0.0011 34.8 12.2 24 80-103 213-236 (359)
22 PF08317 Spc7: Spc7 kinetochor 71.2 1.3E+02 0.0028 31.0 17.3 23 223-245 278-300 (325)
23 TIGR03545 conserved hypothetic 69.2 1.5E+02 0.0034 33.1 15.4 59 81-144 165-227 (555)
24 KOG0972 Huntingtin interacting 68.4 1.3E+02 0.0028 31.5 13.4 76 79-165 219-299 (384)
25 COG0216 PrfA Protein chain rel 55.9 1.4E+02 0.0029 31.9 11.1 75 85-168 5-84 (363)
26 COG4026 Uncharacterized protei 53.1 65 0.0014 32.5 7.9 12 132-143 152-163 (290)
27 PF13710 ACT_5: ACT domain; PD 51.3 36 0.00077 26.8 4.9 35 230-264 9-43 (63)
28 PF07851 TMPIT: TMPIT-like pro 46.4 2.4E+02 0.0051 29.8 11.2 67 131-213 38-104 (330)
29 PRK10869 recombination and rep 45.2 4.8E+02 0.01 29.1 17.5 25 125-149 292-316 (553)
30 PF11172 DUF2959: Protein of u 44.7 2.7E+02 0.0057 27.6 10.6 65 89-158 41-108 (201)
31 PLN02320 seryl-tRNA synthetase 43.4 3.1E+02 0.0067 30.6 12.1 26 50-76 38-64 (502)
32 PRK06737 acetolactate synthase 43.2 63 0.0014 26.9 5.3 36 230-265 19-54 (76)
33 PF13801 Metal_resist: Heavy-m 43.0 1.9E+02 0.0041 23.8 8.6 57 80-143 45-101 (125)
34 PF05377 FlaC_arch: Flagella a 42.7 1.6E+02 0.0034 23.5 7.1 30 139-168 21-50 (55)
35 PRK11152 ilvM acetolactate syn 42.1 60 0.0013 27.0 5.0 38 231-268 21-58 (76)
36 KOG1697 Mitochondrial/chloropl 42.0 22 0.00047 36.2 2.8 29 287-319 153-181 (275)
37 KOG0971 Microtubule-associated 40.1 7.6E+02 0.016 30.0 16.4 110 81-194 225-347 (1243)
38 COG0783 Dps DNA-binding ferrit 38.6 2.4E+02 0.0052 26.5 9.0 93 79-186 54-146 (156)
39 PF07303 Occludin_ELL: Occludi 35.1 60 0.0013 28.3 4.2 48 106-155 32-82 (101)
40 PF12128 DUF3584: Protein of u 34.6 6E+02 0.013 31.1 13.7 42 115-158 759-800 (1201)
41 PRK10869 recombination and rep 33.6 6.8E+02 0.015 27.9 13.0 41 110-159 296-337 (553)
42 PF10458 Val_tRNA-synt_C: Valy 32.6 82 0.0018 25.0 4.3 49 106-155 14-62 (66)
43 PRK13562 acetolactate synthase 32.6 1E+02 0.0022 26.3 5.0 34 232-265 21-55 (84)
44 KOG0995 Centromere-associated 32.1 3.3E+02 0.0071 30.9 10.0 51 104-156 236-286 (581)
45 KOG4796 RNA polymerase II elon 32.1 1.5E+02 0.0032 33.4 7.4 32 120-151 565-596 (604)
46 PF15188 CCDC-167: Coiled-coil 32.0 2.6E+02 0.0056 24.0 7.4 43 106-150 15-57 (85)
47 PRK03918 chromosome segregatio 31.6 5.9E+02 0.013 29.3 12.6 38 107-148 567-604 (880)
48 PF04420 CHD5: CHD5-like prote 31.6 1.8E+02 0.0038 27.2 7.0 39 105-143 42-80 (161)
49 KOG1760 Molecular chaperone Pr 30.7 3E+02 0.0065 25.4 7.9 44 124-167 15-61 (131)
50 smart00787 Spc7 Spc7 kinetocho 30.3 4.1E+02 0.009 27.6 10.0 23 223-245 273-295 (312)
51 KOG3091 Nuclear pore complex, 29.1 7.7E+02 0.017 27.6 12.1 17 106-122 414-430 (508)
52 cd01043 DPS DPS protein, ferri 27.6 3.7E+02 0.008 23.6 8.1 93 80-186 38-130 (139)
53 PTZ00419 valyl-tRNA synthetase 27.3 1.8E+02 0.0039 34.7 7.6 53 106-159 939-991 (995)
54 PF02815 MIR: MIR domain; Int 27.0 94 0.002 29.0 4.4 39 320-358 121-159 (190)
55 PRK05431 seryl-tRNA synthetase 26.5 8.3E+02 0.018 26.3 12.6 18 429-446 381-401 (425)
56 PF00587 tRNA-synt_2b: tRNA sy 26.2 1.6E+02 0.0035 26.8 5.7 48 213-261 118-166 (173)
57 PF07888 CALCOCO1: Calcium bin 25.9 6.7E+02 0.014 28.4 11.2 19 150-168 414-432 (546)
58 PF10805 DUF2730: Protein of u 25.9 4.4E+02 0.0096 22.9 8.9 53 107-165 46-98 (106)
59 KOG1086 Cytosolic sorting prot 25.6 3.9E+02 0.0084 29.7 9.0 27 127-153 204-230 (594)
60 PF06248 Zw10: Centromere/kine 24.6 6.9E+02 0.015 27.8 11.2 21 126-146 80-100 (593)
61 PF12325 TMF_TATA_bd: TATA ele 23.9 5.4E+02 0.012 23.2 12.8 52 131-184 53-108 (120)
62 PF07106 TBPIP: Tat binding pr 23.8 2E+02 0.0043 26.6 5.9 37 81-119 73-109 (169)
63 TIGR01219 Pmev_kin_ERG8 phosph 23.5 4.7E+02 0.01 28.7 9.4 56 190-248 381-441 (454)
64 smart00150 SPEC Spectrin repea 23.4 3.6E+02 0.0078 21.0 10.3 43 107-149 9-51 (101)
65 PF15466 DUF4635: Domain of un 23.2 73 0.0016 29.1 2.7 43 80-127 80-122 (135)
66 PF03357 Snf7: Snf7; InterPro 23.1 5.4E+02 0.012 22.9 8.5 34 126-159 38-71 (171)
67 COG0497 RecN ATPase involved i 23.0 1.1E+03 0.024 26.7 12.2 38 110-149 280-317 (557)
68 KOG1489 Predicted GTP-binding 22.2 3E+02 0.0064 29.4 7.2 107 206-330 45-161 (366)
69 PF07445 priB_priC: Primosomal 22.1 6.8E+02 0.015 23.7 10.1 74 85-159 42-125 (173)
70 PRK04863 mukB cell division pr 21.4 3.3E+02 0.0072 34.3 8.5 22 213-234 488-509 (1486)
71 PLN02943 aminoacyl-tRNA ligase 21.4 2.5E+02 0.0054 33.5 7.3 52 106-158 899-950 (958)
72 PF08014 DUF1704: Domain of un 21.3 6.5E+02 0.014 26.6 9.6 71 218-293 110-187 (349)
73 PF01963 TraB: TraB family; I 21.0 7E+02 0.015 23.8 9.2 41 191-244 218-259 (259)
74 COG1196 Smc Chromosome segrega 20.8 1.4E+03 0.03 27.9 13.4 33 106-144 196-228 (1163)
75 PRK08178 acetolactate synthase 20.6 1.8E+02 0.0038 25.5 4.4 35 233-267 28-62 (96)
76 PF03961 DUF342: Protein of un 20.6 8.7E+02 0.019 26.1 10.7 21 83-103 330-350 (451)
77 cd01020 TroA_b Metal binding p 20.5 2.4E+02 0.0052 27.9 6.0 20 120-139 93-112 (264)
78 PF05659 RPW8: Arabidopsis bro 20.3 6.9E+02 0.015 23.1 9.9 32 85-122 32-63 (147)
79 COG0497 RecN ATPase involved i 20.1 1.3E+03 0.028 26.2 13.3 52 222-283 437-491 (557)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-111 Score=838.51 Aligned_cols=338 Identities=35% Similarity=0.539 Sum_probs=319.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 012936 105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTM 184 (453)
Q Consensus 105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~ 184 (453)
++.+..++++|+.+|++|++.+|++++++++||++.|++++..|++|++..+++.++.+|+.++.|+||.+++.+|+..+
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~ 88 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 36777899999999999999999999999999999999999999999999999999999999889999999999999988
Q ss_pred HHHh--hHHHHHhcC--CCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEE
Q 012936 185 RRKS--KEKELDALL--SGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIK 260 (453)
Q Consensus 185 ~~~~--~~~el~~LL--~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~ 260 (453)
+..+ .+.+|+.|| +||+|++|||||||||+||+||++||++|||||.+||+.+||++++++.++++.||||++++.
T Consensus 89 ~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~ 168 (363)
T COG0216 89 EAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIAS 168 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEE
Confidence 7765 466677655 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceE
Q 012936 261 VDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAV 340 (453)
Q Consensus 261 i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaV 340 (453)
|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||++++ ..+|+|+|+||+|+|||||||||||||||+|||
T Consensus 169 I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee-~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAV 247 (363)
T COG0216 169 ISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEE-VEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAV 247 (363)
T ss_pred EeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCc-ccccccChHHceeeeeecCCCCCCCcCccchhh
Confidence 9999999999999999999999999999999999999999999965 357999999999999999999999999999999
Q ss_pred EEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCccCcceeeecCCCcccceeccc
Q 012936 341 RIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQ-SLTDISWGNQIRTYVLHPYRMVKDLRTN 419 (453)
Q Consensus 341 ri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~-~~~~~~rg~~IRtYn~~p~~~VtDhRt~ 419 (453)
||||+||||||+||++||||+||++||++|++||++++.++++++.+..|+ +.+.++||++|||||| ||+||||||||
T Consensus 248 RiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDHRI~ 326 (363)
T COG0216 248 RITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDHRIN 326 (363)
T ss_pred eeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccchhcc
Confidence 999999999999999999999999999999999999998887776666555 4578999999999999 99999999999
Q ss_pred ceecCcccccC-CCcHHHHHHHHHcc
Q 012936 420 YEVSDPDSVLE-GDLDGFILSYLSAS 444 (453)
Q Consensus 420 ~~~~~l~~vld-GdLD~fI~a~l~~~ 444 (453)
+|+|+|+.||+ |+||++|++++.+.
T Consensus 327 lTl~kLd~vm~gG~LDeii~aLi~~~ 352 (363)
T COG0216 327 LTLYKLDEVMEGGKLDEIIDALIAED 352 (363)
T ss_pred cccccHHHHhccCcHHHHHHHHHHHH
Confidence 99999999999 59999999998764
No 2
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=6e-107 Score=825.85 Aligned_cols=362 Identities=46% Similarity=0.782 Sum_probs=350.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012936 83 GDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMI 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ 162 (453)
.+++..++.+..+++.++++||++.+..++++|+++|++|+||+||+++++++++++.|+++++.|++|++..+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~ 82 (364)
T TIGR00020 3 NEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELL 82 (364)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEE
Q 012936 163 KLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVT 242 (453)
Q Consensus 163 ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~e 242 (453)
+|++++.|++|.+++.+++..+...+.+.++..||+||+|.++|+|||+||+||+||++||++||+||++||+++||+++
T Consensus 83 el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~e 162 (364)
T TIGR00020 83 ELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVE 162 (364)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEE
Q 012936 243 LMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIER 322 (453)
Q Consensus 243 iv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~ 322 (453)
+++.++++.+|+|+|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|++++ +++++|+++||+|++
T Consensus 163 vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~~~~~ 241 (364)
T TIGR00020 163 IIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDLRIDT 241 (364)
T ss_pred EEecCCCCCCceEEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999854 478999999999999
Q ss_pred eecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcc
Q 012936 323 FRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQI 402 (453)
Q Consensus 323 ~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~I 402 (453)
+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|++||++.+.+++.+..+..|+++.+++||+||
T Consensus 242 ~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~I 321 (364)
T TIGR00020 242 YRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQI 321 (364)
T ss_pred eeCCCCCCccccccceEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCe
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888889999999
Q ss_pred eeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHccc
Q 012936 403 RTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL 445 (453)
Q Consensus 403 RtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~~ 445 (453)
|||||+||+||||||||++++||++||+|+||+||++++.|.+
T Consensus 322 RtY~~~~~~rVtDhR~g~~~~~l~~vl~G~Ld~~I~a~~~~~~ 364 (364)
T TIGR00020 322 RSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWKL 364 (364)
T ss_pred EEEECCCCCcccccccCCeecChHHHhCCChHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999998863
No 3
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=3.6e-106 Score=821.30 Aligned_cols=363 Identities=48% Similarity=0.804 Sum_probs=351.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012936 83 GDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMI 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ 162 (453)
.+++..++.+.+++..+++.|+++.+..++.+|+++|++|+||+|++++++++++++.|+++++.|++|++..++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ 82 (367)
T PRK00578 3 NEISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELL 82 (367)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEE
Q 012936 163 KLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVT 242 (453)
Q Consensus 163 ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~e 242 (453)
+|++++.|++|.+++..++..++..+.+.++..||++|+|.++|+|||+||+||+||++||++||+||.+||+++||+++
T Consensus 83 ell~~e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~e 162 (367)
T PRK00578 83 ELAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVE 162 (367)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEE
Q 012936 243 LMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIER 322 (453)
Q Consensus 243 iv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~ 322 (453)
+++.++++.+|+|+|++.|+|++||++||+|+|||||||+|||+++||||||||+|+|+|++++ ..++.|+++||+|+|
T Consensus 163 vi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~-~~~~~i~~~dl~~~~ 241 (367)
T PRK00578 163 VLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDD-TIEIEINPKDLRIDT 241 (367)
T ss_pred EEecCCCCCCCeeEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCC-ccccccChhhEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999864 357899999999999
Q ss_pred eecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcc
Q 012936 323 FRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQI 402 (453)
Q Consensus 323 ~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~I 402 (453)
+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|++||++++.+++.+..+..|+.+.+++||+||
T Consensus 242 ~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~I 321 (367)
T PRK00578 242 YRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGSQI 321 (367)
T ss_pred eeCCCCCCCcccceeeEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCe
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888899999999
Q ss_pred eeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHcccC
Q 012936 403 RTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLD 446 (453)
Q Consensus 403 RtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~~~ 446 (453)
|||||+||+||||||||++++||++||+|+||+||++++.+...
T Consensus 322 RtYn~~p~~rVtDhR~g~~~~~l~~vl~G~ld~~I~~l~~~~~~ 365 (367)
T PRK00578 322 RSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAYLRWRAS 365 (367)
T ss_pred EEEECCCCceeeeeccCceecCHHHhhCCChHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998653
No 4
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=7.7e-104 Score=791.35 Aligned_cols=325 Identities=42% Similarity=0.721 Sum_probs=316.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCC
Q 012936 119 LNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLS 198 (453)
Q Consensus 119 lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~ 198 (453)
|..|+||+|++++++++||++.|+++++.|+++.+..+++.++.+|++++.|++|.+++.+++..++..+..+|+..||+
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l~~ 80 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLS 80 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56899999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceEE
Q 012936 199 GELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHR 278 (453)
Q Consensus 199 ~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHR 278 (453)
||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++||+|+||||
T Consensus 81 ~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvHr 160 (326)
T PRK06746 81 DPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 160 (326)
T ss_pred CCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCC
Q 012936 279 LVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERS 358 (453)
Q Consensus 279 v~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRS 358 (453)
|||+|||+++||||||||+|+|+|++++ +++++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++||
T Consensus 161 v~Rvsp~~s~~rrhTsfa~V~v~P~~~~-~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~~RS 239 (326)
T PRK06746 161 LVRISPFDSSGRRHTSFVSCEVVPEFND-EVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERS 239 (326)
T ss_pred EEecCCCCCCCCeEeeEEEEEEecCcCC-ccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECCCCC
Confidence 9999999999999999999999999854 478999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeecCCCcccceecccceecCcccccCCCcHHHHH
Q 012936 359 QHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFIL 438 (453)
Q Consensus 359 Q~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~ 438 (453)
|++||+.||++|++||++++.+++.++....|+++..++||+|||||||+||+||||||||++++||++||+|+||+||+
T Consensus 240 Q~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G~ld~~I~ 319 (326)
T PRK06746 240 QIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFID 319 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCCeEEEECCCCceeeeeecCceecChHHhhCCCHHHHHH
Confidence 99999999999999999999999888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHcc
Q 012936 439 SYLSAS 444 (453)
Q Consensus 439 a~l~~~ 444 (453)
+++.|+
T Consensus 320 ~~~~~~ 325 (326)
T PRK06746 320 AYLRSR 325 (326)
T ss_pred HHHHcc
Confidence 999875
No 5
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=6e-104 Score=795.58 Aligned_cols=329 Identities=48% Similarity=0.818 Sum_probs=316.2
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 012936 118 ELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALL 197 (453)
Q Consensus 118 ~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL 197 (453)
++++|+||+||+++++++||++.|+++++.|+++.+..+++.++.+|++++.|++|.+++..++..++..+...+|..||
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e~D~el~~~a~~e~~~l~~~l~~~el~~lL 81 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDRRQIDALL 81 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceE
Q 012936 198 SGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVH 277 (453)
Q Consensus 198 ~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvH 277 (453)
++|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++||+|+|||
T Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 161 (339)
T PRK07342 82 SGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVH 161 (339)
T ss_pred CCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCC
Q 012936 278 RLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNER 357 (453)
Q Consensus 278 Rv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eR 357 (453)
||||+|||+++||||||||+|+|+|++++ .++++|+++||+|+++|||||||||||||+|||||+|+||||+|+||++|
T Consensus 162 rv~rvsp~~~~~rrhTs~a~V~VlP~~~~-~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~eR 240 (339)
T PRK07342 162 RLVRISPYDSNARRHTSFASIWVYPVIDD-NIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQER 240 (339)
T ss_pred EEEecCCCCCCCCeEeEEEEEEEEcCCCc-ccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECCcc
Confidence 99999999999999999999999999864 36899999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeecCCCcccceecccceecCcccccCCCcHHHH
Q 012936 358 SQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 437 (453)
Q Consensus 358 SQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI 437 (453)
||++||+.||++|+++|++++.+++.++.+..+..+.+++||+|||||||+||+||||||||++++||++||+|+||+||
T Consensus 241 SQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~G~Ld~~I 320 (339)
T PRK07342 241 SQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLDGDLNEFM 320 (339)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCcCCccCCCCceeeeeccCceecChHHhhCCCHHHHH
Confidence 99999999999999999999988877777766777778999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCc
Q 012936 438 LSYLSASLDK 447 (453)
Q Consensus 438 ~a~l~~~~~~ 447 (453)
++|+.|....
T Consensus 321 ~a~l~~~~~~ 330 (339)
T PRK07342 321 EAALAHRISG 330 (339)
T ss_pred HHHHHHHhcc
Confidence 9999997643
No 6
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3e-103 Score=787.85 Aligned_cols=324 Identities=43% Similarity=0.804 Sum_probs=312.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCC
Q 012936 119 LNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLS 198 (453)
Q Consensus 119 lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~ 198 (453)
+++|+||+||++++++++|++.|+++++.|+.|+...+++.++.+|++++ |+++.+++.+++..+++.+.+.++..||+
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~~-d~e~~~~a~~e~~~l~~~l~~~e~~~l~~ 79 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEE-DDEMKKEIISEVKNIKEEIDRFKIETLLS 79 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999999999999999999999999999655 78899999999999999999999999999
Q ss_pred CCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceEE
Q 012936 199 GELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHR 278 (453)
Q Consensus 199 ~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHR 278 (453)
+|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.+|||+|+|.|+|++||++||+|+||||
T Consensus 80 ~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHr 159 (325)
T PRK05589 80 GEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHR 159 (325)
T ss_pred CCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCC
Q 012936 279 LVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERS 358 (453)
Q Consensus 279 v~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRS 358 (453)
|||+|||+++||||||||+|+|+|++++ .+++.|+++||+|+++|||||||||||||+|||||+|+||||+|.||++||
T Consensus 160 v~r~s~~~~~~rr~ts~a~V~VlP~~~~-~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~eRS 238 (325)
T PRK05589 160 LVRISPFNANGKRQTSFASVEVLPELTD-DQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERS 238 (325)
T ss_pred EEEcCCCCCCCCeEeeeEEEEEecCcCc-cccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCccC
Confidence 9999999999999999999999999854 358999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeecCCCcccceecccceecCcccccCCCcHHHHH
Q 012936 359 QHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFIL 438 (453)
Q Consensus 359 Q~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~ 438 (453)
|++||+.|+++|++||++++.+++.++.+..|+.+.+++||++||||||+||+||||||||++++||++||+|+||+||+
T Consensus 239 Q~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G~Ld~~I~ 318 (325)
T PRK05589 239 QHSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDIDNFIT 318 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCceeeECCCCceeeeeccCceecChHHhhCCCHHHHHH
Confidence 99999999999999999999888777777788888889999999999999999999999999999999999999999999
Q ss_pred HHHHcc
Q 012936 439 SYLSAS 444 (453)
Q Consensus 439 a~l~~~ 444 (453)
++|.|.
T Consensus 319 a~l~~~ 324 (325)
T PRK05589 319 QYLKGN 324 (325)
T ss_pred HHHhhc
Confidence 999874
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=1.1e-99 Score=771.36 Aligned_cols=335 Identities=35% Similarity=0.528 Sum_probs=314.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMR 185 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~ 185 (453)
+.+..++++|+..+++|+||+|++++++++++++.|+++++.|+++++...++.++.+|+++ .|++|.+++.+++..+.
T Consensus 10 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~-~D~e~~~~a~~e~~~l~ 88 (360)
T TIGR00019 10 ESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE-SDPEMREMAKEELEELE 88 (360)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999976 79999999999999998
Q ss_pred HHhhHHHH--Hh--cCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEE
Q 012936 186 RKSKEKEL--DA--LLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKV 261 (453)
Q Consensus 186 ~~~~~~el--~~--LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i 261 (453)
..+.+.+. .. |+++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|||+|++.|
T Consensus 89 ~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i 168 (360)
T TIGR00019 89 EKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEI 168 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEEEEEE
Confidence 88776664 33 558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEE
Q 012936 262 DGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVR 341 (453)
Q Consensus 262 ~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVr 341 (453)
+|++||++|++|.|||||||+|||++++|+|||||+|+|+|.+++ +++.|+++||+|+|+|||||||||||||+||||
T Consensus 169 ~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~SaVr 246 (360)
T TIGR00019 169 KGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE--VEVDINPADLRIDTFRSSGAGGQHVNTTDSAVR 246 (360)
T ss_pred ecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCcCceeeeEE
Confidence 999999999999999999999999999999999999999998864 678999999999999999999999999999999
Q ss_pred EEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCCCccCcceeeecCCCcccceecccc
Q 012936 342 IIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQ-MNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNY 420 (453)
Q Consensus 342 i~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~-~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~ 420 (453)
|+|+||||+|.||++|||++||+.||++|+++|++...+++.+ ....++..+..++||+||||||| |++||||||||+
T Consensus 247 l~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~-~~~rV~DhRtg~ 325 (360)
T TIGR00019 247 ITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNF-PQNRVTDHRINL 325 (360)
T ss_pred EEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEEC-CCCeeeeeccCC
Confidence 9999999999999999999999999999999999998875444 44455666678889999999999 888999999999
Q ss_pred eecCcccccCCCcHHHHHHHHHcc
Q 012936 421 EVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 421 ~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
+++||++||+|+||+||++|+.+.
T Consensus 326 ~~~~l~~vl~G~Ld~~I~~~l~~~ 349 (360)
T TIGR00019 326 TLYKLDEVLEGDLDELIEALIAED 349 (360)
T ss_pred eEcChHHHhCCchHHHHHHHHHHH
Confidence 999999999999999999999875
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=1.3e-98 Score=763.54 Aligned_cols=337 Identities=36% Similarity=0.542 Sum_probs=316.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMR 185 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~ 185 (453)
+.+..++.+|++.+++|+||+||+++++++++++.|+++++.|+++.....++.++.+|+.+++|++|.+++.+++..+.
T Consensus 9 e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~~~l~ 88 (359)
T PRK00591 9 EALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELE 88 (359)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999987789999999999999888
Q ss_pred HHhhHHH--HH--hcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEE
Q 012936 186 RKSKEKE--LD--ALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKV 261 (453)
Q Consensus 186 ~~~~~~e--l~--~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i 261 (453)
..+.+.+ |+ .|+++|+|.++|+|+|+||+||+||++||++|++||.+||+++||++++++..+++.+|+|+|++.|
T Consensus 89 ~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i 168 (359)
T PRK00591 89 ERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEI 168 (359)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEEEEEE
Confidence 8876666 45 3558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEE
Q 012936 262 DGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVR 341 (453)
Q Consensus 262 ~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVr 341 (453)
+|++||++|++|+|||||||+|||++++|+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+||||
T Consensus 169 ~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVr 246 (359)
T PRK00591 169 SGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVR 246 (359)
T ss_pred ecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCccceeeeEE
Confidence 999999999999999999999999999999999999999999865 588999999999999999999999999999999
Q ss_pred EEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCCCccCcceeeecCCCcccceecccc
Q 012936 342 IIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNA-EHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNY 420 (453)
Q Consensus 342 i~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~-~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~ 420 (453)
|+|+||||+|+||++|||++||+.||++|+++|++.+.+++.+..+ .++..+..++||+|||||||+ +++|||||||+
T Consensus 247 l~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~-~~~V~DhRtg~ 325 (359)
T PRK00591 247 ITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFP-QGRVTDHRINL 325 (359)
T ss_pred EEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECC-CCeeeeeccCC
Confidence 9999999999999999999999999999999999999887776555 445556677889999999995 57899999999
Q ss_pred eecCcccccCCCcHHHHHHHHHccc
Q 012936 421 EVSDPDSVLEGDLDGFILSYLSASL 445 (453)
Q Consensus 421 ~~~~l~~vldGdLD~fI~a~l~~~~ 445 (453)
+++||++||+|+||+||++|+.+..
T Consensus 326 ~~~~l~~vl~G~Ld~fI~~~l~~~~ 350 (359)
T PRK00591 326 TLYKLDEVMEGDLDELIDALIAEDQ 350 (359)
T ss_pred EEcChHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999999999998763
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.3e-97 Score=742.00 Aligned_cols=303 Identities=44% Similarity=0.769 Sum_probs=289.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHH
Q 012936 141 LMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESM 220 (453)
Q Consensus 141 L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~ 220 (453)
|+..++.|+.+...++|+.+|++|++++.|++|.+++.+++..++..+.+.|++.||++|+|.+||+|||+||+||+||+
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea~ 81 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEAQ 81 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEE
Q 012936 221 DWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAV 300 (453)
Q Consensus 221 ~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~V 300 (453)
+||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++||+|+|||||||+|||+++||||||||+|+|
T Consensus 82 ~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~V 161 (313)
T PRK08787 82 DWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 161 (313)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHH
Q 012936 301 IPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIA 380 (453)
Q Consensus 301 lP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~ 380 (453)
+|++++ .+++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+
T Consensus 162 ~P~~~~-~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~e 240 (313)
T PRK08787 162 SPEVDD-NIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQ 240 (313)
T ss_pred ecCcCc-ccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999864 4689999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcccCCCCccCcceeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHccc
Q 012936 381 RQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL 445 (453)
Q Consensus 381 ~~~~~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~~ 445 (453)
++.++....+..+.+++||+|||||||+| ++|||||||++++||++||+|+||+||+++|.+..
T Consensus 241 ~~~~~~~~~~~~k~~i~~g~qIRtY~f~~-~~V~DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~ 304 (313)
T PRK08787 241 KRNAEKDALEATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGL 304 (313)
T ss_pred HHHHHHHHHhhhhhhCcccccccceeCCC-CcceeeccCceEcChhHhhCCChHHHHHHHHHHHH
Confidence 87776666665566789999999999977 57999999999999999999999999999999853
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-85 Score=665.51 Aligned_cols=324 Identities=38% Similarity=0.642 Sum_probs=282.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH----Hh
Q 012936 113 NLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRR----KS 188 (453)
Q Consensus 113 ~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~----~~ 188 (453)
...+..+.+-++|+|+. ++...+..|......++++.. +..|..+++|++|..++.+|+..+.+ ..
T Consensus 51 ~~~~~~~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~-------lk~l~~~~e~e~~~~~a~~E~~~~~~~i~~~~ 120 (386)
T KOG2726|consen 51 KVQEAASNDSDLWDDPA---ELDEVLNALSDRMKLVRELKS-------LKSLIKEGEDEDMDELAEEEAEEISKEIERSL 120 (386)
T ss_pred hhHHHhhchhhhhhhhH---HHHHHHHHHHHHHHHHHHhhh-------HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999986 344444544444444443333 33444444677888877777765544 45
Q ss_pred hHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhc
Q 012936 189 KEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFG 268 (453)
Q Consensus 189 ~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg 268 (453)
.++++..|+++|+|.++|+|||+||+||+||++|+.+|++||.+||+.+||++++++..+++.+||++|++.|+|.+||+
T Consensus 121 ~~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg 200 (386)
T KOG2726|consen 121 HELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYG 200 (386)
T ss_pred HHHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhh
Confidence 67888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCc
Q 012936 269 YAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTG 348 (453)
Q Consensus 269 ~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTG 348 (453)
+|++|.||||+||+|+|+++||+||||++|+|+|.+...++++.|+++||+|+++|||||||||||||+|||||+|+|||
T Consensus 201 ~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTG 280 (386)
T KOG2726|consen 201 YLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTG 280 (386)
T ss_pred eeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCc
Confidence 99999999999999999999999999999999999955568999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCCCccCcceeeecCCCcccceecccceecCccc
Q 012936 349 ITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMN-AEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDS 427 (453)
Q Consensus 349 ivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~-~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~ 427 (453)
|+|+||++||||+||+.|+.+|++||++...++...+. +.++.+++...|+++||||||+|+ +|||||++++.+++.+
T Consensus 281 Ivv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q~-rv~D~r~~~~~~d~~~ 359 (386)
T KOG2726|consen 281 IVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQD-RVTDHRIGLESHDLES 359 (386)
T ss_pred eEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCcc-chhhhhhcccccchHH
Confidence 99999999999999999999999999999888765544 445555567899999999999555 5999999999999999
Q ss_pred ccCCCcHHHHHHHHHcccCc
Q 012936 428 VLEGDLDGFILSYLSASLDK 447 (453)
Q Consensus 428 vldGdLD~fI~a~l~~~~~~ 447 (453)
||+|+||+||++++.+....
T Consensus 360 ~l~G~Ld~li~~~~~~~~~~ 379 (386)
T KOG2726|consen 360 FLDGNLDELIEALLSLRREE 379 (386)
T ss_pred HHhccHHHHHHHHHHHhhHH
Confidence 99999999999999886543
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-80 Score=595.99 Aligned_cols=238 Identities=54% Similarity=0.905 Sum_probs=231.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCC
Q 012936 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 285 (453)
Q Consensus 206 ~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~ 285 (453)
|+|+|+||+||+|||+||.||||||+|||+++||++|++|..+|+.+|+|||+|.|+|++|||+|+.|.|||||+|+|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHH
Q 012936 286 DSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKAS 365 (453)
Q Consensus 286 ~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~ 365 (453)
++.|||||||++|.|+|+++ .+++|+|++.||+|+|+|||||||||||||+|||||||+||||+|.||.+||||+|++.
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~ 159 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKAL 159 (239)
T ss_pred CcCcccccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHH
Confidence 99999999999999999997 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHcc
Q 012936 366 AMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 366 A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
||.+|+.+|++.+++++.++..+.+..++.++||+|||+|+|+|+++|+||||+++..|.+.||||++|.||++++.+.
T Consensus 160 a~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~ 238 (239)
T COG1186 160 ARKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhcc
Confidence 9999999999999998888877777888899999999999999999999999999999999999999999999999864
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=7.4e-67 Score=494.71 Aligned_cols=197 Identities=31% Similarity=0.470 Sum_probs=188.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCC-CeeEEEEEEeccchhcccccccceEEEEEeCC
Q 012936 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIA-GIKRATIKVDGEYAFGYAKAEVGVHRLVRISP 284 (453)
Q Consensus 206 ~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~-Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp 284 (453)
.+|||+||+||+||++||++||+||++||+++||++++++..+++.+ |+|+|+|.|+|++||++|+.|.|+|+|++.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 38999999999999999999999999999999999999999999874 69999999999999999999999999999999
Q ss_pred CCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHH
Q 012936 285 FDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKA 364 (453)
Q Consensus 285 ~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~ 364 (453)
++++++|||||++|.|+|. +++|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+
T Consensus 81 ~r~~~~R~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 154 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKR 154 (200)
T ss_pred CCCCCCeeEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHH
Confidence 9999999999999999983 4578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeecC
Q 012936 365 SAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLH 408 (453)
Q Consensus 365 ~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~~ 408 (453)
.|+++|+++|++++.+++++..+.+|.++.+++||+||||||+.
T Consensus 155 ~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~Rg~~iRty~~~ 198 (200)
T TIGR03072 155 LATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeeCC
Confidence 99999999999999888877888889999999999999999984
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=3.1e-66 Score=490.51 Aligned_cols=196 Identities=28% Similarity=0.412 Sum_probs=188.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCC-CCeeEEEEEEeccchhcccccccceEEEEEeCC
Q 012936 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEI-AGIKRATIKVDGEYAFGYAKAEVGVHRLVRISP 284 (453)
Q Consensus 206 ~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~-~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp 284 (453)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|++.|+|++||++|+.|.|+|+|++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6899999999999999999999999999999999999999999998 559999999999999999999999999999999
Q ss_pred CCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHH
Q 012936 285 FDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKA 364 (453)
Q Consensus 285 ~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~ 364 (453)
++++++|||||++|+|+|. +++|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+
T Consensus 82 ~~~~~~R~~s~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 155 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSA------DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKR 155 (200)
T ss_pred CCCCCCceEEEEEEEEeCC------cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHH
Confidence 9999999999999999973 4578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeec
Q 012936 365 SAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVL 407 (453)
Q Consensus 365 ~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~ 407 (453)
.|+++|+++|++.+.++++++.+.+|..+.+++||+|||||..
T Consensus 156 ~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 156 LARLLIAWKLEQQQQEQSAALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeec
Confidence 9999999999999988888888888999999999999999975
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=1e-34 Score=253.27 Aligned_cols=109 Identities=39% Similarity=0.604 Sum_probs=96.6
Q ss_pred CCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012936 308 STHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNA 387 (453)
Q Consensus 308 ~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~ 387 (453)
..++.|+++||.++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++|++.|+++|+++|.++..++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999887555554444
Q ss_pred HHhcccC-CCCccCcceeeecCCCcccceec
Q 012936 388 EHTQSLT-DISWGNQIRTYVLHPYRMVKDLR 417 (453)
Q Consensus 388 ~~~~~~~-~~~rg~~IRtYn~~p~~~VtDhR 417 (453)
..+..+. .+.++++||+|+| |+.+|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~-~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNF-PRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEET-TTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccC-ChhhcccCC
Confidence 4455554 4899999999999 999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.96 E-value=8.7e-30 Score=222.65 Aligned_cols=110 Identities=37% Similarity=0.620 Sum_probs=96.8
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHhhHHHHH----hcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 012936 164 LAREENDTELELESLEALLTMRRKSKEKELD----ALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGY 239 (453)
Q Consensus 164 La~eE~D~El~~e~~~el~~~~~~~~~~el~----~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~ 239 (453)
|..+++|++|++++.+++..+...+.+.+.+ .++++|+|.++|+|||+||+||+||++||++|++||++||+++||
T Consensus 2 ~~~~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw 81 (115)
T PF03462_consen 2 MLEEEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGW 81 (115)
T ss_dssp -HCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 4456789999999999999988887665555 344799999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCeeEEEEEEeccchhcccccc
Q 012936 240 RVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAE 273 (453)
Q Consensus 240 ~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E 273 (453)
++++++.++++.+|+|+|++.|+|++||++||+|
T Consensus 82 ~~~~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 82 KVEVLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEEEEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 9999999999999999999999999999999997
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.84 E-value=4.1e-21 Score=173.52 Aligned_cols=69 Identities=30% Similarity=0.477 Sum_probs=64.2
Q ss_pred ccccCCCCeEEEEeecCCCCCccccccCceEEEEe------ec-----------------Cc-eEEEEcCCCCHHhHHHH
Q 012936 310 HVQINESDLRIERFRSGGAGGQHANTTDSAVRIIH------IP-----------------TG-ITATCQNERSQHQNKAS 365 (453)
Q Consensus 310 ~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~H------iP-----------------TG-ivv~~q~eRSQ~~Nk~~ 365 (453)
++.|+++||++.|+|||||||||||||+|+|+|+| +| +| |+|+||++|||++|++.
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~ 86 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRED 86 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999996 77 35 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012936 366 AMGVLQSRVNQLE 378 (453)
Q Consensus 366 A~~~L~~kL~~~~ 378 (453)
|+++|.++|.+..
T Consensus 87 al~kL~~~i~~~~ 99 (138)
T PRK09256 87 ALERLVALIREAL 99 (138)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.6e-14 Score=131.68 Aligned_cols=69 Identities=30% Similarity=0.444 Sum_probs=61.1
Q ss_pred ccccCCCCeEEEEeecCCCCCccccccCceEEEEe-------ecC------------------ceEEEEcCCCCHHhHHH
Q 012936 310 HVQINESDLRIERFRSGGAGGQHANTTDSAVRIIH-------IPT------------------GITATCQNERSQHQNKA 364 (453)
Q Consensus 310 ~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~H-------iPT------------------Givv~~q~eRSQ~~Nk~ 364 (453)
.-.|+...+.|.+.||||||||||||++|+|-|+. ||. .|++.++..||||.|.+
T Consensus 34 ~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Nia 113 (172)
T KOG3429|consen 34 KGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIA 113 (172)
T ss_pred CCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHH
Confidence 34577788999999999999999999999999983 441 49999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012936 365 SAMGVLQSRVNQLE 378 (453)
Q Consensus 365 ~A~~~L~~kL~~~~ 378 (453)
+|+++|++.|++.+
T Consensus 114 DcleKlr~~I~~~~ 127 (172)
T KOG3429|consen 114 DCLEKLRDIIRAAE 127 (172)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 18
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.19 E-value=2.1 Score=47.70 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHhhhHHHH
Q 012936 89 AAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDP--VHAGRISREHGSLMGKM 145 (453)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~--~ka~kl~KE~s~L~~~v 145 (453)
...+...+..+...+ +.++.++++|+++|.+|+++.|. +++.++.+++..++..+
T Consensus 558 ~~~~~~~~~~~e~~i--~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 614 (638)
T PRK10636 558 TQPLRKEIARLEKEM--EKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGL 614 (638)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHH
Confidence 344444555555543 78889999999999999998764 48899998888877543
No 19
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=82.30 E-value=5 Score=44.66 Aligned_cols=47 Identities=11% Similarity=0.341 Sum_probs=37.3
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHhhhHHH
Q 012936 96 IQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPV-HAGRISREHGSLMGK 144 (453)
Q Consensus 96 ~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~-ka~kl~KE~s~L~~~ 144 (453)
+..+...+ +.++.++++|+++|.+|++++|+. +++++++++..++..
T Consensus 570 ~~~~e~~i--~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (635)
T PRK11147 570 LEQLPQLL--EDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQE 617 (635)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHH
Confidence 44454433 778889999999999999998766 899999888887753
No 20
>PRK11546 zraP zinc resistance protein; Provisional
Probab=73.94 E-value=22 Score=33.16 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=43.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHH
Q 012936 78 LDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGK 144 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~ 144 (453)
.+|.-..+....++.......++ +++..+..||...+..|+ +|++++.++.+|.+.|...
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LR-----qqL~aKr~ELnALl~~~~--pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALR-----QQLVSKRYEYNALLTANP--PDSSKINAVAKEMENLRQS 104 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 34444545555555555555555 556778889999998886 5999999999999888763
No 21
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.96 E-value=52 Score=34.80 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhC
Q 012936 80 ESEGDWKSHAAAIAQSIQVIKKRL 103 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l 103 (453)
.+..||+.|++.+.+-...|...+
T Consensus 213 ~d~kDWR~hleqm~~~~~~I~~~~ 236 (359)
T PF10498_consen 213 ADAKDWRSHLEQMKQHKKSIESAL 236 (359)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhh
Confidence 355889999988887777776665
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.17 E-value=1.3e+02 Score=30.98 Aligned_cols=23 Identities=4% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Q 012936 223 ASMVLQMYKSWAQRRGYRVTLMD 245 (453)
Q Consensus 223 a~~L~rMY~r~ae~~g~~~eiv~ 245 (453)
+..|-..|..+....||++.-++
T Consensus 278 v~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHCcEEEEEe
Confidence 45677888888899999998776
No 23
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=69.21 E-value=1.5e+02 Score=33.13 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=38.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhC----ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHH
Q 012936 81 SEGDWKSHAAAIAQSIQVIKKRL----QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGK 144 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~ 144 (453)
...+++..++...+.+......| +++.++.++++|+.. =+.+|...++..++...|..-
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----~ik~p~~i~~~~~e~d~lk~e 227 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----DIKNPLELQKIKEEFDKLKKE 227 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHH
Confidence 44455566666666666555555 788889999998884 256777766666666655543
No 24
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=68.35 E-value=1.3e+02 Score=31.52 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=37.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCC-----hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012936 79 DESEGDWKSHAAAIAQSIQVIKKRLQ-----WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQ 153 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~ 153 (453)
..+..||+-|++.+.+.-..+...++ ++++..++..--+++++ +-+.|+ ++|++++..|+++..
T Consensus 219 k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~S--------REK~lN---nqL~~l~q~fr~a~~ 287 (384)
T KOG0972|consen 219 KQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIAS--------REKSLN---NQLASLMQKFRRATD 287 (384)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHH
Confidence 34677787777776665555544443 13333333221111111 112233 345566666666666
Q ss_pred HHHHHHHHHHHH
Q 012936 154 ELLEHIDMIKLA 165 (453)
Q Consensus 154 ~l~d~~el~ELa 165 (453)
.+.++.+-..-+
T Consensus 288 ~lse~~e~y~q~ 299 (384)
T KOG0972|consen 288 TLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHh
Confidence 666555554433
No 25
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=55.90 E-value=1.4e+02 Score=31.88 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-Chh--HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HH
Q 012936 85 WKSHAAAIAQSIQVIKKRL-QWK--NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLE--HI 159 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l-~~~--~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d--~~ 159 (453)
+...++.+..+++.+...| |++ .-..+|..|..+.+ +...+...+.+.+...+.....+..+.+ ..
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a---------~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~ 75 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYA---------ELEPIVEKYREYKKAQEDLEDAKEMLAEEKDP 75 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 3446667777777776665 222 22345555555532 2334444444444444444444444443 56
Q ss_pred HHHHHHhhc
Q 012936 160 DMIKLAREE 168 (453)
Q Consensus 160 el~ELa~eE 168 (453)
+|.+|+++|
T Consensus 76 em~ema~~E 84 (363)
T COG0216 76 EMREMAEEE 84 (363)
T ss_pred HHHHHHHHH
Confidence 677777654
No 26
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.12 E-value=65 Score=32.47 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=5.3
Q ss_pred HHHHHHHhhhHH
Q 012936 132 GRISREHGSLMG 143 (453)
Q Consensus 132 ~kl~KE~s~L~~ 143 (453)
..+.+++.+|+.
T Consensus 152 eeL~~eleele~ 163 (290)
T COG4026 152 EELLKELEELEA 163 (290)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 27
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=51.27 E-value=36 Score=26.82 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=28.0
Q ss_pred HHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEecc
Q 012936 230 YKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGE 264 (453)
Q Consensus 230 Y~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~ 264 (453)
....+.++||.++-+.-.+.+..|+..+++.+.|+
T Consensus 9 i~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 9 ITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 34555799999999999998889999999999993
No 28
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=46.35 E-value=2.4e+02 Score=29.83 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEE
Q 012936 131 AGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEV 210 (453)
Q Consensus 131 a~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI 210 (453)
+..+.++..+|+.+....++++... ..++++..+++.+++.+.+..+. +++..||.+ ++.+|.+
T Consensus 38 ~ssI~~QkkrLk~L~~sLk~~~~~~-----------~~e~~~~i~~L~~~Ik~r~~~l~--DmEa~LPkk---NGlyL~l 101 (330)
T PF07851_consen 38 SSSISHQKKRLKELKKSLKRCKKSL-----------SAEERELIEKLEEDIKERRCQLF--DMEAFLPKK---NGLYLRL 101 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-----------ChhHHHHHHHHHHHHHHHHhhHH--HHHhhCCCC---CCcccce
Confidence 4455555555555554444443320 01123333444444444433333 344666554 5566666
Q ss_pred ecC
Q 012936 211 QAG 213 (453)
Q Consensus 211 ~aG 213 (453)
-=|
T Consensus 102 iLG 104 (330)
T PF07851_consen 102 ILG 104 (330)
T ss_pred ecc
Confidence 555
No 29
>PRK10869 recombination and repair protein; Provisional
Probab=45.18 E-value=4.8e+02 Score=29.08 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 125 WDDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 125 wdD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
--||.+..++..++..|..+..+|.
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3488888888877777776666665
No 30
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.67 E-value=2.7e+02 Score=27.55 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHH
Q 012936 89 AAAIAQSIQVIKKRL--QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMK-EVKAFEQELLEH 158 (453)
Q Consensus 89 ~~~~~~~~~~~~~~l--~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~-~~~~l~~~l~d~ 158 (453)
-+.+.+.++.+...+ |-..+...|+.|..+..+. .+.|..+..+...++.+.+ .|.+|+.++...
T Consensus 41 qeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s-----~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y 108 (201)
T PF11172_consen 41 QEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESS-----EDAAEEVSDRIDAVEDVADALFDEWEQELDQY 108 (201)
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554 4467888888888888764 5678888888888888766 566777766644
No 31
>PLN02320 seryl-tRNA synthetase
Probab=43.44 E-value=3.1e+02 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=15.6
Q ss_pred cccccc-ccccccCCCcccccccccccc
Q 012936 50 WFSTQA-AVEPSTSDGLTVDGIVASQWT 76 (453)
Q Consensus 50 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (453)
.+|--+ ...+++.++ .-++++.++|-
T Consensus 38 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 64 (502)
T PLN02320 38 AFSASAAVQDIPATQK-SDSSVARPQWK 64 (502)
T ss_pred HHhhhhcccCCCcccc-ccCcccccccc
Confidence 334443 345555555 55688999995
No 32
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=43.21 E-value=63 Score=26.89 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccc
Q 012936 230 YKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEY 265 (453)
Q Consensus 230 Y~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ 265 (453)
....+.++||.++-+...+.+..|+.+.++.+.|+.
T Consensus 19 i~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 19 ISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 345567899999999999999999999999988854
No 33
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=42.97 E-value=1.9e+02 Score=23.81 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHH
Q 012936 80 ESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~ 143 (453)
+...+++.........+..++ ..+.....+|...|..|.+ |+.++..+.++...+..
T Consensus 45 eQ~~~l~~~~~~~~~~~~~~r-----~~~~~~r~~l~~ll~~~~~--D~~~i~a~~~~~~~~~~ 101 (125)
T PF13801_consen 45 EQQAKLRALMDEFRQEMRALR-----QELRAARQELRALLAAPPP--DEAAIEALLEEIREAQA 101 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCSSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHH
Confidence 355555555555555555554 4556777888999999976 88888888887776654
No 34
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.69 E-value=1.6e+02 Score=23.45 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012936 139 GSLMGKMKEVKAFEQELLEHIDMIKLAREE 168 (453)
Q Consensus 139 s~L~~~v~~~~~l~~~l~d~~el~ELa~eE 168 (453)
++++.+-+..+.+++.+.++-.++|+....
T Consensus 21 ~en~~i~~~ve~i~envk~ll~lYE~Vs~~ 50 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSLYEVVSNQ 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444445556666666777777766443
No 35
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=42.09 E-value=60 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhc
Q 012936 231 KSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFG 268 (453)
Q Consensus 231 ~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg 268 (453)
.+.+.++||.++-++..+++..++.++++.+.++.+..
T Consensus 21 ~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ 58 (76)
T PRK11152 21 LRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPID 58 (76)
T ss_pred HHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHH
Confidence 45567999999999999988889999999997665443
No 36
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=41.97 E-value=22 Score=36.17 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCCccccceeEEEEeeCCCCCCCccccCCCCeE
Q 012936 287 SGKRRHTSFAAVAVIPNSGDSSTHVQINESDLR 319 (453)
Q Consensus 287 s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~ 319 (453)
..|||+++.|+|.|.|= +-+|.||-.|+.
T Consensus 153 ~~g~rK~a~A~V~v~~G----tGk~~vNg~~~~ 181 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPG----TGKFDVNGRDLD 181 (275)
T ss_pred eccceecceeEEEEecC----ceeEEecchhHH
Confidence 46779999999999773 235666655554
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.08 E-value=7.6e+02 Score=29.96 Aligned_cols=110 Identities=15% Similarity=0.303 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhC--------ChhHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHhhhHHHHHHHHHH
Q 012936 81 SEGDWKSHAAAIAQSIQVIKKRL--------QWKNLNVRLNLLSAELNKPNLWDDP-VHAGRISREHGSLMGKMKEVKAF 151 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~r~~~le~~lsdP~~wdD~-~ka~kl~KE~s~L~~~v~~~~~l 151 (453)
.+.+++..+..|.+.++.++..- .++.++..++.+++--+. +..-+ .--++|.+.+.+.+...+.-+++
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSk--im~qqa~Lqrel~raR~e~keaqe~ke~~ 302 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSK--IMEQQADLQRELKRARKEAKEAQEAKERY 302 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888887775432 123333333333321111 00000 11123344444455556666677
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHH----HHHHHHHHhhHHHHH
Q 012936 152 EQELLEHIDMIKLAREENDTELELESLE----ALLTMRRKSKEKELD 194 (453)
Q Consensus 152 ~~~l~d~~el~ELa~eE~D~El~~e~~~----el~~~~~~~~~~el~ 194 (453)
+.++.|+.+.+||+- -|.||.+|=.+ ++..++..++++++.
T Consensus 303 k~emad~ad~iEmaT--ldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 303 KEEMADTADAIEMAT--LDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888874 36677554332 344455555555544
No 38
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=38.61 E-value=2.4e+02 Score=26.53 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=50.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012936 79 DESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEH 158 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~ 158 (453)
++-+.++..+++.+++++..+++.=- .-.+.+.++..--..|.- .+ +++. ++.+++.|..+ ++.+
T Consensus 54 ee~y~el~~~~DeiAERi~~LGg~p~--~t~~~~~~~s~ike~~~~-~~---~~~~------l~~l~~~~~~l---~~~~ 118 (156)
T COG0783 54 EELYEELAEHVDEIAERIRALGGVPL--GTLSEYLKLSSIKEEPGD-YT---AREM------LKELVEDYEYL---IKEL 118 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc--ccHHHHHHhCCCcccCCC-CC---HHHH------HHHHHHHHHHH---HHHH
Confidence 44666777888888888888876531 122223333222223332 22 2222 23333444443 4566
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 012936 159 IDMIKLAREENDTELELESLEALLTMRR 186 (453)
Q Consensus 159 ~el~ELa~eE~D~El~~e~~~el~~~~~ 186 (453)
.+.++++.+..|+-...++.+-+..+++
T Consensus 119 r~~~~~a~e~gD~~Tadl~~~~~~~~EK 146 (156)
T COG0783 119 RKGIELADEAGDEVTADLLTDIIRELEK 146 (156)
T ss_pred HHHHHhhhhcCChhHHHHHHHHHHHHHH
Confidence 6667777777888766666665655544
No 39
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=35.11 E-value=60 Score=28.29 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRIS---REHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~---KE~s~L~~~v~~~~~l~~~l 155 (453)
+.+..+|.+|+.+|.... .+..++..+. .|+..++..--.|.+-++..
T Consensus 32 ~~v~~~f~~L~~~l~~l~--~~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc 82 (101)
T PF07303_consen 32 DAVSRRFQELDSELKRLP--PGSQEYKRIAQILQEYNKKKKRDPNYQEKKKRC 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHS---TTSHHHHHHH---HHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 455666777777774321 1444444444 77777652223444433333
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.56 E-value=6e+02 Score=31.08 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012936 115 LSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEH 158 (453)
Q Consensus 115 le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~ 158 (453)
...+|++-++ |+.....+.+++..|+..++........+.+.
T Consensus 759 ~~~eL~~~Gv--D~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 759 YNQELAGKGV--DPERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456666776 88888888888888887666555544444433
No 41
>PRK10869 recombination and repair protein; Provisional
Probab=33.65 E-value=6.8e+02 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 012936 110 VRLNLLSAELNKPNLWDDPVHAGRISREHG-SLMGKMKEVKAFEQELLEHI 159 (453)
Q Consensus 110 ~r~~~le~~lsdP~~wdD~~ka~kl~KE~s-~L~~~v~~~~~l~~~l~d~~ 159 (453)
.+++++++++. ...+|.|.|. .++.++...++++++++++.
T Consensus 296 ~~l~~ie~Rl~---------~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 296 NRLAELEQRLS---------KQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 34566666653 3556666666 56666666666666665543
No 42
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.63 E-value=82 Score=24.99 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l 155 (453)
+.+...+..++..|++|+|.... -..-+.++...|...-..+..+...+
T Consensus 14 ~kl~~~i~~~~~kL~n~~F~~kA-P~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 14 EKLEKEIERLEKKLSNENFVEKA-PEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999999999985321 11234445555554444444444433
No 43
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=32.63 E-value=1e+02 Score=26.32 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=29.7
Q ss_pred HHHHHCCCEEEEEeccCCCCCCeeEEEEEEe-ccc
Q 012936 232 SWAQRRGYRVTLMDEMPGEIAGIKRATIKVD-GEY 265 (453)
Q Consensus 232 r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~-G~~ 265 (453)
..+.++||.++-+.-.+++..|+.+.|+.+. |+.
T Consensus 21 ~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 21 SAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 3446899999999999999999999999997 754
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.14 E-value=3.3e+02 Score=30.89 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012936 104 QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELL 156 (453)
Q Consensus 104 ~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~ 156 (453)
+++.+++.-.+|+++++ ..-.+|.+...+-++++.|+.-+..|+.+...+.
T Consensus 236 ~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56777888888888887 4556777778888888889999999888765444
No 45
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=32.09 E-value=1.5e+02 Score=33.37 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=19.9
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHH
Q 012936 120 NKPNLWDDPVHAGRISREHGSLMGKMKEVKAF 151 (453)
Q Consensus 120 sdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l 151 (453)
.||+|-++..+..-|-..++-|+.+|..|++-
T Consensus 565 ~dp~y~eeK~RceYLhsKLaHIK~lI~efDk~ 596 (604)
T KOG4796|consen 565 KDPNYMEEKQRCEYLHSKLAHIKTLIGEFDKQ 596 (604)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666666665543
No 46
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.02 E-value=2.6e+02 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKA 150 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~ 150 (453)
...+.+++.++..+-++.+-++. -..+-+|+..|...+..|++
T Consensus 15 ~~cr~~le~ve~rL~~~eLs~e~--R~~lE~E~~~l~~~l~~~E~ 57 (85)
T PF15188_consen 15 AQCRRRLEAVESRLRRRELSPEA--RRSLEKELNELKEKLENNEK 57 (85)
T ss_pred HHHHHHHHHHHHHHcccCCChHH--HHHHHHHHHHHHHHhhccHH
Confidence 34556678899999999886554 34566888887777666654
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=31.61 E-value=5.9e+02 Score=29.28 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHH
Q 012936 107 NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEV 148 (453)
Q Consensus 107 ~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~ 148 (453)
.+..++++++.++..-+. +....+..++.+|+.....|
T Consensus 567 ~~~~~~~~~~~~l~~L~~----~~~~~~~~~~~~l~~~~~~~ 604 (880)
T PRK03918 567 ELEEELAELLKELEELGF----ESVEELEERLKELEPFYNEY 604 (880)
T ss_pred HHHHHHHHHHHHHhhhcc----chHHHHHHHHHHhhhhHHHH
Confidence 334455555555543221 13334455555554443333
No 48
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=31.60 E-value=1.8e+02 Score=27.18 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHH
Q 012936 105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143 (453)
Q Consensus 105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~ 143 (453)
..+++.++.++-++++.-+-=|+-.++.++.|++..+++
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~ 80 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEE 80 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888776666778888888877765554
No 49
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.74 E-value=3e+02 Score=25.41 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHhh
Q 012936 124 LWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDM---IKLARE 167 (453)
Q Consensus 124 ~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el---~ELa~e 167 (453)
.|.|+.+..+.+|-+++...+-..+...+..++.+.+. ++|+-+
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~De 61 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDE 61 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCc
Confidence 47899888888887777776666666666655555544 555533
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.30 E-value=4.1e+02 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Q 012936 223 ASMVLQMYKSWAQRRGYRVTLMD 245 (453)
Q Consensus 223 a~~L~rMY~r~ae~~g~~~eiv~ 245 (453)
+..|.+-|..+-...||++.-+.
T Consensus 273 i~~Lk~~~~~Le~l~g~~~~~~~ 295 (312)
T smart00787 273 IEKLKEQLKLLQSLTGWKITKLS 295 (312)
T ss_pred HHHHHHHHHHHHHHhCCeeEecc
Confidence 45577777777788999987763
No 51
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.09 E-value=7.7e+02 Score=27.63 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHhcCC
Q 012936 106 KNLNVRLNLLSAELNKP 122 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP 122 (453)
+.|+++++.|-.++.+|
T Consensus 414 E~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHHhcCh
Confidence 33444444444444444
No 52
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=27.64 E-value=3.7e+02 Score=23.55 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=43.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012936 80 ESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHI 159 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~ 159 (453)
+...+...+++.+++++-.+++.-.- -.+.+.+....-..|.-+.|.+.+ |+..++.+. ..+..+.
T Consensus 38 e~~~~~~~~~D~lAERi~~lgg~P~~--~~~~~~~~s~l~~~~~~~~~~~~~---------l~~~~~~~~---~~i~~~~ 103 (139)
T cd01043 38 ELYDELREAIDEIAERIRALGGKPLG--TLKEYAELSTIKEEPAGVLSAKEM---------VAELLEDYE---TLIEELR 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHhHCCCCCCCCCCCCHHHH---------HHHHHHHHH---HHHHHHH
Confidence 34445566777777777776655421 111122221111122122232211 223333333 3344556
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Q 012936 160 DMIKLAREENDTELELESLEALLTMRR 186 (453)
Q Consensus 160 el~ELa~eE~D~El~~e~~~el~~~~~ 186 (453)
+.++++.+++|+.....+.+-+...++
T Consensus 104 ~~i~~a~~~~D~~t~~ll~~il~~~ek 130 (139)
T cd01043 104 EAIELADEAGDPATADLLTEIIRELEK 130 (139)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 666777667788777666555544433
No 53
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=27.27 E-value=1.8e+02 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHI 159 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~ 159 (453)
+.++.+++.++.+|++|+|-... -...+.+|...|+........+++.+..+.
T Consensus 939 ~kl~~ei~~~~~kL~N~~F~~kA-p~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 939 AKLQKSLESYLKKISIPNYEDKV-PEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHhCCchhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999986432 344566777777666555555555555444
No 54
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=26.99 E-value=94 Score=29.04 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred EEEeecCCCCCccccccCceEEEEeecCceEEEEcCCCC
Q 012936 320 IERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERS 358 (453)
Q Consensus 320 i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRS 358 (453)
++..-..|.++..+-..+|.+||+|..||..+.++..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~l 159 (190)
T PF02815_consen 121 FEEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKL 159 (190)
T ss_dssp EEEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES
T ss_pred EEecccCCccCCcEEecccEEEEEECCcCEEEecCCccc
Confidence 333445677788888889999999999998888776544
No 55
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.52 E-value=8.3e+02 Score=26.28 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=11.4
Q ss_pred cCCC---cHHHHHHHHHcccC
Q 012936 429 LEGD---LDGFILSYLSASLD 446 (453)
Q Consensus 429 ldGd---LD~fI~a~l~~~~~ 446 (453)
|+|- ++.+|-|+|....+
T Consensus 381 ln~t~~a~~R~l~ailE~~q~ 401 (425)
T PRK05431 381 LNGSGLAVGRTLVAILENYQQ 401 (425)
T ss_pred eCCchhhHHHHHHHHHHHCCC
Confidence 5664 57777777776433
No 56
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=26.19 E-value=1.6e+02 Score=26.78 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=40.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHCCC-EEEEEeccCCCCCCeeEEEEEE
Q 012936 213 GAGGTESMDWASMVLQMYKSWAQRRGY-RVTLMDEMPGEIAGIKRATIKV 261 (453)
Q Consensus 213 GaGG~Ea~~fa~~L~rMY~r~ae~~g~-~~eiv~~~~~~~~Giksa~l~i 261 (453)
|.. +++..+...++..|..+.+.-|+ .+.+.....++.++..+.+..+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~ 166 (173)
T PF00587_consen 118 CTP-EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDI 166 (173)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEE
T ss_pred eCC-cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccH
Confidence 444 89999999999999999999999 9999999998887765555444
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.91 E-value=6.7e+02 Score=28.38 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 012936 150 AFEQELLEHIDMIKLAREE 168 (453)
Q Consensus 150 ~l~~~l~d~~el~ELa~eE 168 (453)
+..+++.|++..+.++..|
T Consensus 414 E~~rel~Elks~lrv~qkE 432 (546)
T PF07888_consen 414 ENRRELQELKSSLRVAQKE 432 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666544
No 58
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.87 E-value=4.4e+02 Score=22.90 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012936 107 NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLA 165 (453)
Q Consensus 107 ~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa 165 (453)
....|+..+|.++.+ .++.+...+|..+.++++..++ .+...++-+....+++
T Consensus 46 ~~~~Rl~~lE~~l~~---LPt~~dv~~L~l~l~el~G~~~---~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 46 EHDRRLQALETKLEH---LPTRDDVHDLQLELAELRGELK---ELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH
Confidence 456778888888866 3577888888877777766444 4444455555555544
No 59
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=3.9e+02 Score=29.71 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012936 127 DPVHAGRISREHGSLMGKMKEVKAFEQ 153 (453)
Q Consensus 127 D~~ka~kl~KE~s~L~~~v~~~~~l~~ 153 (453)
|+.+..+++|+.+.|+.+...++.++.
T Consensus 204 ee~k~eKiskR~~aleev~n~vk~l~e 230 (594)
T KOG1086|consen 204 EEHKLEKISKRVKALEEVNNNVKLLEE 230 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877666655543
No 60
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=24.65 E-value=6.9e+02 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHhhhHHHHH
Q 012936 126 DDPVHAGRISREHGSLMGKMK 146 (453)
Q Consensus 126 dD~~ka~kl~KE~s~L~~~v~ 146 (453)
+..++.+.+.+|+......+.
T Consensus 80 ~a~~e~~~L~~eL~~~~~~l~ 100 (593)
T PF06248_consen 80 DAAEELQELKRELEENEQLLE 100 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665554444
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.88 E-value=5.4e+02 Score=23.20 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhcCChHHHHHHHHHHHHH
Q 012936 131 AGRISREHGSLMGKMKEVKAFEQELLEH----IDMIKLAREENDTELELESLEALLTM 184 (453)
Q Consensus 131 a~kl~KE~s~L~~~v~~~~~l~~~l~d~----~el~ELa~eE~D~El~~e~~~el~~~ 184 (453)
..+++++...+......+..++..+.++ ..+++|+.| . .|..+++...+.++
T Consensus 53 iv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE-K-~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 53 IVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE-K-SEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHH
Confidence 4445666666666666666666666553 466777754 2 23334444445444
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.82 E-value=2e+02 Score=26.57 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q 012936 81 SEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAEL 119 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~l 119 (453)
.-.++...+..+...+..+.... ..+..++..|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~--k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEV--KSLEAELASLSSEP 109 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC
Confidence 34445556666766666666544 44555555554443
No 63
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=23.53 E-value=4.7e+02 Score=28.72 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCCCCCceEEEecCCCchHHHH-HHH---H-HHHHHHHHHHHCCCEEEEEeccC
Q 012936 190 EKELDALLSGELDPCSCYIEVQAGAGGTESMD-WAS---M-VLQMYKSWAQRRGYRVTLMDEMP 248 (453)
Q Consensus 190 ~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~-fa~---~-L~rMY~r~ae~~g~~~eiv~~~~ 248 (453)
..++..||..-..-..|+.=..|||||=+|.. ++. + +-.....| +.. .|..++-.+
T Consensus 381 p~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W-~~~--~V~pL~v~~ 441 (454)
T TIGR01219 381 PESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAW-SSH--NVLALDVRE 441 (454)
T ss_pred CHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHH-hhC--CEEEEeccc
Confidence 34455555222344678888999999988764 222 2 55666777 233 344454444
No 64
>smart00150 SPEC Spectrin repeats.
Probab=23.41 E-value=3.6e+02 Score=21.01 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 107 NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 107 ~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
.+..-+.+.+..+.++++-.|+..+..+.++|..+..-+....
T Consensus 9 ~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~ 51 (101)
T smart00150 9 ELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHE 51 (101)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444466666677777766899999999999988887665444
No 65
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=23.23 E-value=73 Score=29.09 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCC
Q 012936 80 ESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDD 127 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD 127 (453)
+.+..+|..-+=++..+..+ ++++++++.+||+...|-++|=|
T Consensus 80 pseEPik~~r~WLkenLhvf-----lEkLE~EvreLEQlV~DLE~WLD 122 (135)
T PF15466_consen 80 PSEEPIKAIRNWLKENLHVF-----LEKLEKEVRELEQLVRDLEEWLD 122 (135)
T ss_pred CccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665555566555544 36777888888888777777755
No 66
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=23.13 E-value=5.4e+02 Score=22.94 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012936 126 DDPVHAGRISREHGSLMGKMKEVKAFEQELLEHI 159 (453)
Q Consensus 126 dD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~ 159 (453)
.+...|..+.++...++..+..+......++...
T Consensus 38 ~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~ 71 (171)
T PF03357_consen 38 GNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVL 71 (171)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999988887777765555443
No 67
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.00 E-value=1.1e+03 Score=26.72 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 110 VRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 110 ~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
+-..+|...+.+-+| ||.+..++..++..|..+..+|.
T Consensus 280 ea~~el~~~~~~le~--Dp~~L~~ve~Rl~~L~~l~RKY~ 317 (557)
T COG0497 280 EASEELRAYLDELEF--DPNRLEEVEERLFALKSLARKYG 317 (557)
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHhC
Confidence 334556666655555 77777777777777776655554
No 68
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=22.21 E-value=3e+02 Score=29.42 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=59.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCC
Q 012936 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 285 (453)
Q Consensus 206 ~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~ 285 (453)
-++.|.+|.||.-|.-|-.. | +...|- =+--.|..+| +|.+..+- +.++.+..++-+++.|.-
T Consensus 45 ~rv~~kgG~GG~G~ssf~~~----~---~~~~g~----PdGGdGG~GG--~V~~~a~~----~~~~~l~~~~s~~~a~~G 107 (366)
T KOG1489|consen 45 RRVRIKGGSGGSGASSFFRG----Y---RRPRGG----PDGGDGGNGG--HVYFVAKP----GAFKQLSHVGSLIQAPNG 107 (366)
T ss_pred eeEEeeccCCCCccchhhhh----c---ccccCC----CCCCCCCCCc--eEEEEeCc----ccccccccCCceEEccCC
Confidence 38999999999888765322 1 111111 0112233344 66666652 344566678877777653
Q ss_pred C--CCCccccceeEEEEeeCCCCCCC--------ccccCCCCeEEEEeecCCCCC
Q 012936 286 D--SGKRRHTSFAAVAVIPNSGDSST--------HVQINESDLRIERFRSGGAGG 330 (453)
Q Consensus 286 ~--s~grrhTSfasV~VlP~~~~~~~--------~i~I~~~dl~i~~~RssGpGG 330 (453)
+ +..-+|-+.+...+++.+-...+ --+++..+-++-..|+ |.||
T Consensus 108 e~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arG-G~GG 161 (366)
T KOG1489|consen 108 ENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARG-GEGG 161 (366)
T ss_pred CcCccccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeec-CCCC
Confidence 3 34445666666655554322111 1134556677777885 5777
No 69
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=22.09 E-value=6.8e+02 Score=23.68 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012936 85 WKSHAAAIAQSIQVIKKRLQ----------WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQE 154 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~----------~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~ 154 (453)
+...++++...+..|....+ -+.+...+..|...++.-.++........ .+-...|-..+..|.+|++.
T Consensus 42 L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~-~~~~~~Lyq~L~~hqe~erR 120 (173)
T PF07445_consen 42 LSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSS-RKPIHQLYQRLAQHQEYERR 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccc-cCchhHHHHHHHHHHHHHHH
Confidence 56677777777777765543 25667778889988887777654444423 44445565666677777766
Q ss_pred HHHHH
Q 012936 155 LLEHI 159 (453)
Q Consensus 155 l~d~~ 159 (453)
+.+..
T Consensus 121 L~~mi 125 (173)
T PF07445_consen 121 LLAMI 125 (173)
T ss_pred HHHHH
Confidence 65544
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.38 E-value=3.3e+02 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=17.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 012936 213 GAGGTESMDWASMVLQMYKSWA 234 (453)
Q Consensus 213 GaGG~Ea~~fa~~L~rMY~r~a 234 (453)
..-..+|..||..+++-|..+-
T Consensus 488 kv~~~~a~~~~~~~~~~~~~~~ 509 (1486)
T PRK04863 488 EVSRSEAWDVARELLRRLREQR 509 (1486)
T ss_pred CcCHHHHHHHHHHHHHHhHHHH
Confidence 3556788999999999887663
No 71
>PLN02943 aminoacyl-tRNA ligase
Probab=21.37 E-value=2.5e+02 Score=33.51 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEH 158 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~ 158 (453)
+.++.+++.++.+|++|+|-... -...+.+|..+|+.....+..+++.+..+
T Consensus 899 ~klekei~~~~~kLsN~~F~~KA-P~evv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 899 SKMQTEYDALAARLSSPKFVEKA-PEDVVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred HHHHHHHHHHHHHhCCchhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999986332 23455666666665555555555544443
No 72
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=21.26 E-value=6.5e+02 Score=26.59 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHC--CCEEEEEeccCCC-CCCeeEEEEEEec----cchhcccccccceEEEEEeCCCCCCCc
Q 012936 218 ESMDWASMVLQMYKSWAQRR--GYRVTLMDEMPGE-IAGIKRATIKVDG----EYAFGYAKAEVGVHRLVRISPFDSGKR 290 (453)
Q Consensus 218 Ea~~fa~~L~rMY~r~ae~~--g~~~eiv~~~~~~-~~Giksa~l~i~G----~~ayg~lk~E~GvHRv~Rvsp~~s~gr 290 (453)
.|..++..+-++..+|.... .++|++-+...+. ..|-..+.|...- ..+.+.+.+|.|||-+- --+|+
T Consensus 110 ~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~l~I~~~~~fs~~~l~~L~~HEigvH~lt-----~~Ng~ 184 (349)
T PF08014_consen 110 DAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDRLKINKNAMFSERDLEALLHHEIGVHLLT-----TLNGR 184 (349)
T ss_pred CHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCeeEEcCCCCcCHHHHHHHHHHhhhhhhcc-----ccccc
Confidence 35567788888888887776 5566665544322 2333333333211 24567899999999663 33566
Q ss_pred ccc
Q 012936 291 RHT 293 (453)
Q Consensus 291 rhT 293 (453)
.+.
T Consensus 185 ~QP 187 (349)
T PF08014_consen 185 AQP 187 (349)
T ss_pred cCC
Confidence 554
No 73
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=20.97 E-value=7e+02 Score=23.78 Aligned_cols=41 Identities=27% Similarity=0.554 Sum_probs=24.1
Q ss_pred HHHHhcCCCCCCCCCceEEEecC-CCchHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q 012936 191 KELDALLSGELDPCSCYIEVQAG-AGGTESMDWASMVLQMYKSWAQRRGYRVTLM 244 (453)
Q Consensus 191 ~el~~LL~~~~D~~~~~leI~aG-aGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv 244 (453)
..|..+++.+ .++++-|=+| -.|.+. |+ ...+++||+|+-|
T Consensus 218 ~~i~~~l~~~---~~~fvvVGa~HL~G~~g------vl----~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 218 EKIEELLKEG---GTVFVVVGAGHLPGEDG------VL----DLLRKKGYTVEPV 259 (259)
T ss_pred HHHHHHHhcC---CCEEEEEcchhccchhh------HH----HHHHhCCceeecC
Confidence 4455566444 6788888665 223333 33 4446899998753
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.83 E-value=1.4e+03 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGK 144 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~ 144 (453)
..+..+++.|+.+-.. ..+++++..++..++..
T Consensus 196 ~el~~~l~~L~~q~~~------a~~y~~l~~e~~~~~~~ 228 (1163)
T COG1196 196 EELEKQLEKLERQAEK------AERYQELKAELRELELA 228 (1163)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 4555555556655544 56677777766666643
No 75
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=20.62 E-value=1.8e+02 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.5
Q ss_pred HHHHCCCEEEEEeccCCCCCCeeEEEEEEeccchh
Q 012936 233 WAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAF 267 (453)
Q Consensus 233 ~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~ay 267 (453)
.+.++||.++-+...+.+..|+.+.|+.+.++...
T Consensus 28 lFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i 62 (96)
T PRK08178 28 LFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRL 62 (96)
T ss_pred HHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHH
Confidence 34579999999999999999999999999876443
No 76
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.61 E-value=8.7e+02 Score=26.06 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC
Q 012936 83 GDWKSHAAAIAQSIQVIKKRL 103 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l 103 (453)
.+++..++.+...+..+...+
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l 350 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEEL 350 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555554333
No 77
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.46 E-value=2.4e+02 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.714 Sum_probs=16.6
Q ss_pred cCCCCCCCHHHHHHHHHHHh
Q 012936 120 NKPNLWDDPVHAGRISREHG 139 (453)
Q Consensus 120 sdP~~wdD~~ka~kl~KE~s 139 (453)
.||-+|-||..+..+.+..+
T Consensus 93 ~dPH~Wldp~n~~~~a~~I~ 112 (264)
T cd01020 93 DNPHLWYDPETMSKVANALA 112 (264)
T ss_pred CCCceecCHhHHHHHHHHHH
Confidence 49999999999988876554
No 78
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=20.26 E-value=6.9e+02 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCC
Q 012936 85 WKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKP 122 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP 122 (453)
++..++.+.+.++.|. .+.++++.+..++..|
T Consensus 32 fk~~l~~L~sTl~~i~------P~i~eI~~~~~eld~~ 63 (147)
T PF05659_consen 32 FKSILKRLESTLESII------PIIKEIDKLNVELDRP 63 (147)
T ss_pred hhhHHHHHHHHHHHhh------hHHHHHHHHhhhcCCc
Confidence 4445555555555553 3345677777777776
No 79
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.09 E-value=1.3e+03 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccch---hcccccccceEEEEEeC
Q 012936 222 WASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYA---FGYAKAEVGVHRLVRIS 283 (453)
Q Consensus 222 fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~a---yg~lk~E~GvHRv~Rvs 283 (453)
....++.+-.-++.+.+...-|.|+.....+ |.-| -..|+.=+-.|+|.+|+
T Consensus 437 LSRimLAlk~i~~~~~~~ptlIFDEVD~GIs----------G~~A~aVg~~L~~Ls~~~QVl~VT 491 (557)
T COG0497 437 LSRIMLALKVILSRKDDTPTLIFDEVDTGIS----------GRVAQAVGKKLRRLSEHHQVLCVT 491 (557)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEecccCCCC----------hHHHHHHHHHHHHHhcCceEEEEe
Confidence 3444555555667777777778887765444 4322 23566667778888775
Done!