Query 012936
Match_columns 453
No_of_seqs 310 out of 1872
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 2E-113 6E-118 871.7 39.7 360 83-444 5-364 (365)
2 2ihr_1 Peptide chain release f 100.0 3E-110 1E-114 847.0 22.0 351 89-446 3-354 (365)
3 1zbt_A RF-1, peptide chain rel 100.0 2E-108 7E-113 834.5 30.7 340 102-444 16-361 (371)
4 3d5a_X RF1, peptide chain rele 100.0 4E-107 1E-111 821.8 36.4 334 105-444 5-343 (354)
5 2b3t_B RF-1, peptide chain rel 100.0 5E-107 2E-111 822.6 18.8 335 104-444 8-348 (360)
6 1rq0_A RF-1, peptide chain rel 100.0 3E-102 1E-106 782.2 25.7 320 109-444 2-324 (342)
7 2rsm_A Probable peptide chain 100.0 3.8E-38 1.3E-42 273.2 7.5 100 277-380 11-110 (115)
8 1j26_A Immature colon carcinom 99.9 2E-25 6.9E-30 193.8 9.8 71 308-378 12-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 3.1E-25 1.1E-29 191.5 9.0 70 309-378 6-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 2.2E-23 7.5E-28 187.4 6.9 70 309-378 6-99 (140)
11 2lw1_A ABC transporter ATP-bin 95.9 0.046 1.6E-06 44.9 9.4 41 106-146 32-73 (89)
12 3lay_A Zinc resistance-associa 73.6 14 0.00047 34.0 8.8 60 79-145 70-129 (175)
13 4fla_A Regulation of nuclear P 50.9 1.4E+02 0.0046 26.7 12.0 80 81-166 23-106 (152)
14 3na7_A HP0958; flagellar bioge 48.3 1.7E+02 0.0057 27.6 11.6 42 104-148 68-109 (256)
15 1xaw_A Occludin; coiled-coil, 45.6 26 0.00089 31.3 5.0 58 81-143 46-104 (140)
16 3ghg_A Fibrinogen alpha chain; 40.5 2.3E+02 0.008 30.3 12.0 21 80-100 57-77 (562)
17 1xaw_A Occludin; coiled-coil, 38.0 2.1E+02 0.0072 25.4 9.6 40 110-149 97-136 (140)
18 1s35_A Beta-I spectrin, spectr 34.6 1.9E+02 0.0065 25.3 9.1 47 105-151 116-162 (214)
19 3viq_B Mating-type switching p 32.2 2.1E+02 0.0071 23.4 9.8 56 91-158 5-60 (85)
20 3iq1_A DPS family protein; csg 30.3 1.3E+02 0.0045 26.1 7.1 94 78-186 56-149 (159)
21 4eve_A Neutrophil-activating p 29.4 1.4E+02 0.0047 26.3 7.2 95 78-186 60-154 (164)
22 1cun_A Protein (alpha spectrin 26.1 3.2E+02 0.011 23.6 11.2 46 106-151 116-161 (213)
23 4abx_A DNA repair protein RECN 25.7 3.5E+02 0.012 23.9 10.4 24 126-149 119-142 (175)
24 1zuj_A Hypothetical protein ll 25.3 1.3E+02 0.0045 27.3 6.4 102 79-197 61-165 (179)
25 3r6n_A Desmoplakin; spectrin r 24.5 2.5E+02 0.0085 29.0 9.0 7 401-407 382-388 (450)
26 2ko1_A CTR148A, GTP pyrophosph 23.7 2.1E+02 0.0072 21.2 6.4 56 233-290 25-86 (88)
27 1u5p_A Spectrin alpha chain, b 23.4 3.3E+02 0.011 23.8 8.6 59 104-162 11-69 (216)
28 3lbx_A Spectrin alpha chain, e 22.9 3.7E+02 0.013 23.2 9.6 50 105-155 65-114 (161)
29 2a3d_A Protein (de novo three- 21.9 1.1E+02 0.0039 23.5 4.3 65 83-148 5-70 (73)
30 3kwo_A Putative bacterioferrit 21.8 3E+02 0.01 23.6 7.8 96 78-187 43-138 (152)
31 2ctk_A Vigilin; K homology typ 21.7 92 0.0031 25.6 4.2 49 327-379 33-87 (104)
32 1zs3_A Lactococcus lactis Mg13 21.5 1.7E+02 0.0057 26.6 6.3 102 79-197 62-166 (182)
33 1u4q_A Spectrin alpha chain, b 21.4 4.8E+02 0.017 24.0 13.9 45 107-151 226-270 (322)
34 3fb2_A Spectrin alpha chain, b 21.4 4.2E+02 0.014 23.3 9.8 44 106-149 23-66 (218)
35 3ls0_A SLL1638 protein, PSBQ; 21.4 4.2E+02 0.014 23.3 9.0 15 48-62 3-17 (133)
36 3lbx_B Beta-I spectrin, spectr 21.2 4E+02 0.014 23.0 9.3 49 107-155 121-169 (185)
37 2pih_A Protein YMCA; regulate 21.1 2.6E+02 0.0089 24.4 7.3 16 130-145 41-56 (151)
38 3pe0_A Plectin; cytoskeleton, 20.8 87 0.003 30.1 4.4 29 119-147 140-168 (283)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.6e-113 Score=871.70 Aligned_cols=360 Identities=42% Similarity=0.752 Sum_probs=348.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012936 83 GDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMI 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ 162 (453)
.+++..++.+..++..++.+||++.+..++++|+.+|++|+||+||+++++++||++.|+++++.|++|++.++|+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~ 84 (365)
T 1gqe_A 5 NPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLL 84 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEE
Q 012936 163 KLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVT 242 (453)
Q Consensus 163 ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~e 242 (453)
+|++++.|++|.+++.+++..++..+.+.|++.||+||+|.+||||||+||+||+||++||+||||||++||+++||+++
T Consensus 85 el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~e 164 (365)
T 1gqe_A 85 ELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTE 164 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEE
Q 012936 243 LMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIER 322 (453)
Q Consensus 243 iv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~ 322 (453)
+++.++|+.+|||+|++.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ ++++.|+++||+|+|
T Consensus 165 vl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~dl~~~~ 243 (365)
T 1gqe_A 165 IIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLRIDV 243 (365)
T ss_dssp EEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGGGEEEEE
T ss_pred EEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHHHceEee
Confidence 9999999999999999999999999999999999999999999999999999999999999965 488999999999999
Q ss_pred eecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcc
Q 012936 323 FRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQI 402 (453)
Q Consensus 323 ~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~I 402 (453)
+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.++.+.+++||+||
T Consensus 244 ~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~I 323 (365)
T 1gqe_A 244 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 323 (365)
T ss_dssp ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred ecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCe
Confidence 99999999999999999999999999999999999999999999999999999999998888777778777889999999
Q ss_pred eeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHcc
Q 012936 403 RTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 403 RtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
|||||+|++ |||||||++++||++||+||||+||+|++.|.
T Consensus 324 RtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~~ 364 (365)
T 1gqe_A 324 RSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAG 364 (365)
T ss_dssp EEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred EeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence 999998877 99999999999999999999999999999875
No 2
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=3.3e-110 Score=846.95 Aligned_cols=351 Identities=39% Similarity=0.628 Sum_probs=332.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 012936 89 AAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIK-LARE 167 (453)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~E-La~e 167 (453)
++.+..++..++.+||++.+..|+++|+++|++|+||+||+++++++||++.|+++++.|++|++.++|+.++.+ |+++
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~e 82 (365)
T 2ihr_1 3 LERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAE 82 (365)
T ss_dssp ---CTTTHHHHTTSSSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777888999999999999999999999999999999999999999999999999999999999999999999 8865
Q ss_pred cCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEecc
Q 012936 168 ENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEM 247 (453)
Q Consensus 168 E~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~ 247 (453)
+ | +++.+++..++..+.+.|++.||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.+
T Consensus 83 e-d----~~a~~e~~~l~~~~~~le~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~ 157 (365)
T 2ihr_1 83 E-R----EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLT 157 (365)
T ss_dssp T-G----GGTGGGTHHHHHHHHHHHHHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred c-H----HHHHHHHHHHHHHHHHHHHHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4 3 5567778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCC
Q 012936 248 PGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGG 327 (453)
Q Consensus 248 ~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssG 327 (453)
+++.+|||+|++.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ ++++.|+++||+|+|+||||
T Consensus 158 ~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~-~~~i~i~~~dl~i~~~RssG 236 (365)
T 2ihr_1 158 PGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDE-EVEVVLKPEELRIDVMRASG 236 (365)
T ss_dssp ECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCS-SSSCCCCGGGEEEEEECCCC
T ss_pred CCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCc-ccccccCccceEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999965 47899999999999999999
Q ss_pred CCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcceeeec
Q 012936 328 AGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVL 407 (453)
Q Consensus 328 pGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IRtYn~ 407 (453)
|||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.|+.+.+++||+|||||||
T Consensus 237 ~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtYnf 316 (365)
T 2ihr_1 237 PGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVL 316 (365)
T ss_dssp SSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSCCCSCSEEEEG
T ss_pred CCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeeeEEC
Confidence 99999999999999999999999999999999999999999999999999999888888888877889999999999999
Q ss_pred CCCcccceecccceecCcccccCCCcHHHHHHHHHcccC
Q 012936 408 HPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLD 446 (453)
Q Consensus 408 ~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~~~ 446 (453)
+| +||||||||++++||++||+||||+||++++.+...
T Consensus 317 ~~-~rVtDhRtg~~~~~l~~VldGdld~~I~a~l~~~~~ 354 (365)
T 2ihr_1 317 DK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAG 354 (365)
T ss_dssp GG-TEEEETTTCCEESCHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CC-ccchhcccCceeCChHHHhCCcHHHHHHHHHHHHhc
Confidence 66 899999999999999999999999999999988753
No 3
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=2.2e-108 Score=834.49 Aligned_cols=340 Identities=28% Similarity=0.430 Sum_probs=283.4
Q ss_pred hCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHH
Q 012936 102 RLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLARE-ENDTELELESLEA 180 (453)
Q Consensus 102 ~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~e-E~D~El~~e~~~e 180 (453)
+++++.+..|+++|+++|++|+||+|++++++++||++.|+++++.|++|++.++++.++.+|+.+ +.|++|.+++.++
T Consensus 16 ~~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e 95 (371)
T 1zbt_A 16 YDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEE 95 (371)
T ss_dssp HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999977 7799999999999
Q ss_pred HHHHHHHhhHHH--HHhcC--CCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeE
Q 012936 181 LLTMRRKSKEKE--LDALL--SGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKR 256 (453)
Q Consensus 181 l~~~~~~~~~~e--l~~LL--~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giks 256 (453)
+..++..+.+.| |+.|| +||+|.+||||||+||+||+||++||+||||||++||+++||++++++.++|+.+|||+
T Consensus 96 ~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ks 175 (371)
T 1zbt_A 96 LKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKE 175 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceE
Confidence 999998887666 56777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCcccccc
Q 012936 257 ATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTT 336 (453)
Q Consensus 257 a~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt 336 (453)
|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||
T Consensus 176 v~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~e--v~i~I~~~dl~i~~~RssGpGGQ~VNkt 253 (371)
T 1zbt_A 176 VVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEE--VEYEIDPKDLRVDIYHASGAGGQNVNKV 253 (371)
T ss_dssp EEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECC---------CC
T ss_pred EEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccc--cccccCcCcEEEEEecCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999975 7899999999999999999999999999
Q ss_pred CceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCccCcceeeecCCCcccce
Q 012936 337 DSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQ-SLTDISWGNQIRTYVLHPYRMVKD 415 (453)
Q Consensus 337 ~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~-~~~~~~rg~~IRtYn~~p~~~VtD 415 (453)
+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.+..++ .++.++||++||||||+| +||||
T Consensus 254 ~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q-~rVtD 332 (371)
T 1zbt_A 254 ATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQ-NRVTD 332 (371)
T ss_dssp CCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTT-TEEEE
T ss_pred ceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCC-CEeee
Confidence 9999999999999999999999999999999999999999998876655444433 335566778999999955 88999
Q ss_pred ecccceecCcccccCCCcHHHHHHHHHcc
Q 012936 416 LRTNYEVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 416 hRt~~~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
||||++++||++||+||||+||++|+.+.
T Consensus 333 hRtg~~~~~l~~VldGdLd~~I~a~l~~~ 361 (371)
T 1zbt_A 333 HRIGLTLQKLDSILSGKLDEVIDALILYD 361 (371)
T ss_dssp TTTTEEESCHHHHHTTCCHHHHHHHHHHH
T ss_pred cccCCeECChHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999764
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=3.9e-107 Score=821.76 Aligned_cols=334 Identities=29% Similarity=0.463 Sum_probs=313.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 012936 105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTM 184 (453)
Q Consensus 105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~ 184 (453)
++.+..++++|+.+|++|+||+|++++++++||++.|+++++.|++|++.++++.++.+|+. |++|.+++.+++..+
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~---D~e~~~~a~~e~~~l 81 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD---DPELKEMAKAEREAL 81 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred HHHhhHHH--HHhcC--CCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEE
Q 012936 185 RRKSKEKE--LDALL--SGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIK 260 (453)
Q Consensus 185 ~~~~~~~e--l~~LL--~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~ 260 (453)
+..+.+.| |+.|| +||+|.+||||||+||+||+||++||+|||+||++||+++||++++++.++++.+|||+|++.
T Consensus 82 ~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~ 161 (354)
T 3d5a_X 82 LARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFE 161 (354)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEE
Confidence 98887766 77666 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceE
Q 012936 261 VDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAV 340 (453)
Q Consensus 261 i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaV 340 (453)
|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+|||
T Consensus 162 i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~--~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaV 239 (354)
T 3d5a_X 162 VRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE--EDFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239 (354)
T ss_dssp EESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCC--CCCCCCGGGEEEEEECCCSCCHHHHHHCCCEE
T ss_pred EECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcc--cccccCccceEEEeecCCCCCCcccccccceE
Confidence 9999999999999999999999999999999999999999999975 78999999999999999999999999999999
Q ss_pred EEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCccCcceeeecCCCcccceeccc
Q 012936 341 RIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEH-TQSLTDISWGNQIRTYVLHPYRMVKDLRTN 419 (453)
Q Consensus 341 ri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~-~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~ 419 (453)
||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.+.. +..++.++||++||||||+| +||||||||
T Consensus 240 rl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q-~rVtDhR~~ 318 (354)
T 3d5a_X 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQ-SRVTDHRIG 318 (354)
T ss_dssp EEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTT-TEEEETTTT
T ss_pred EEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC-CeeeecccC
Confidence 9999999999999999999999999999999999999988766554444 44445677888999999955 889999999
Q ss_pred ceecCcccccCCCcHHHHHHHHHcc
Q 012936 420 YEVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 420 ~~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
++++||++||+||||+||++|+.+.
T Consensus 319 ~~~~~l~~vldG~Ld~~I~a~l~~~ 343 (354)
T 3d5a_X 319 FTTHDLEGVLSGHLTPILEALKRAD 343 (354)
T ss_dssp EEECCHHHHTTTCCHHHHHHHHHHH
T ss_pred ceeCChHHhhCCchHHHHHHHHHHH
Confidence 9999999999999999999998754
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=4.8e-107 Score=822.58 Aligned_cols=335 Identities=35% Similarity=0.496 Sum_probs=275.1
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 012936 104 QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLT 183 (453)
Q Consensus 104 ~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~ 183 (453)
+++.+..++++|+.+|++|+||+|++++++++||++.|+++++.|++|++.++++.++.+|+ + |++|.+++.+++..
T Consensus 8 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e--D~e~~~~a~~e~~~ 84 (360)
T 2b3t_B 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D--DPEMREMAQDELRE 84 (360)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999998 3 89999999999999
Q ss_pred HHHHhhHHHHH----hcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEE
Q 012936 184 MRRKSKEKELD----ALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATI 259 (453)
Q Consensus 184 ~~~~~~~~el~----~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l 259 (453)
++..+.+.|.+ .|++||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++|+.+|||+|++
T Consensus 85 l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~ 164 (360)
T 2b3t_B 85 AKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIA 164 (360)
T ss_dssp ----------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEE
Confidence 99888887775 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCc-cccCCCCeEEEEeecCCCCCccccccCc
Q 012936 260 KVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTH-VQINESDLRIERFRSGGAGGQHANTTDS 338 (453)
Q Consensus 260 ~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~-i~I~~~dl~i~~~RssGpGGQ~VNkt~S 338 (453)
.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ++ +.|+++||+|+|+|||||||||||||+|
T Consensus 165 ~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~s 242 (360)
T 2b3t_B 165 KISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPD--AELPDVNPADLRIDTFRSSGAGGQHVNTTDS 242 (360)
T ss_dssp EECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCT--TTCCCCCSSSEEEEECCSSCCCTTTCCCSSE
T ss_pred EEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCccc--ccccccChhheEEeeecCCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999975 56 8899999999999999999999999999
Q ss_pred eEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCccCcceeeecCCCcccceec
Q 012936 339 AVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQ-SLTDISWGNQIRTYVLHPYRMVKDLR 417 (453)
Q Consensus 339 aVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~-~~~~~~rg~~IRtYn~~p~~~VtDhR 417 (453)
||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.+..++ .++.++||++||||||+| +||||||
T Consensus 243 aVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~-~rVtDhR 321 (360)
T 2b3t_B 243 AIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQ-GRVTDHR 321 (360)
T ss_dssp EEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTT-TEEEEGG
T ss_pred eEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCC-Ceeeecc
Confidence 99999999999999999999999999999999999999887766544444443 334566778999999955 8899999
Q ss_pred ccceecCcccccCCCcHHHHHHHHHcc
Q 012936 418 TNYEVSDPDSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 418 t~~~~~~l~~vldGdLD~fI~a~l~~~ 444 (453)
||++++||++||+||||+||++|+.+.
T Consensus 322 t~~~~~~l~~vldG~Ld~~I~a~l~~~ 348 (360)
T 2b3t_B 322 INLTLYRLDEVMEGKLDMLIEPIIQEH 348 (360)
T ss_dssp GTEEESCHHHHHHTCTHHHHHHHHHHH
T ss_pred cCcEECCHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=3.4e-102 Score=782.16 Aligned_cols=320 Identities=33% Similarity=0.510 Sum_probs=279.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh
Q 012936 109 NVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKS 188 (453)
Q Consensus 109 ~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~ 188 (453)
..++++|+.+|++|+| |++++++++||++.|+++++.|++|+ .++| +.+|+.++.|+ .+++..++..+
T Consensus 2 ~~r~~el~~~~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~~---~~~l~~e~~D~------~~e~~~l~~~l 69 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQE---FIELLREEGEN------ELEIEKYEKEL 69 (342)
T ss_dssp TTTTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHTTTTTTTTC------CSCHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH---HHHHHHhcCCH------HHHHHHHHHHH
Confidence 3578999999999999 99999999999999999999999999 4444 44555555555 33455555555
Q ss_pred hHHH--HHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEEEeccch
Q 012936 189 KEKE--LDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYA 266 (453)
Q Consensus 189 ~~~e--l~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~~a 266 (453)
.+.| |+.||. |+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|++.|+|++|
T Consensus 70 ~~le~~l~~lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~a 148 (342)
T 1rq0_A 70 DQLYQELLFLLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNA 148 (342)
T ss_dssp HHHHHHHHHHHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTH
T ss_pred HHHHHHHHHhcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCH
Confidence 5555 888887 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeec
Q 012936 267 FGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIP 346 (453)
Q Consensus 267 yg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiP 346 (453)
||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+|||||+|+|
T Consensus 149 yg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlP 226 (342)
T 1rq0_A 149 YGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE--KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226 (342)
T ss_dssp HHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETT
T ss_pred HHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccc--cccccChhHeEEEeecCCCCCCcccccccceEEEEECC
Confidence 9999999999999999999999999999999999999975 78999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCccCcceeeecCCCcccceecccceecCc
Q 012936 347 TGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEH-TQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDP 425 (453)
Q Consensus 347 TGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~-~~~~~~~~rg~~IRtYn~~p~~~VtDhRt~~~~~~l 425 (453)
|||+|+||++|||++||+.||++|+++|++++.+++.++.+.. +..++.++||++||||||+| +||||||||++++||
T Consensus 227 tGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~-~rVtDhRt~~~~~~l 305 (342)
T 1rq0_A 227 TGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ-NRVTDHRINYTSYRL 305 (342)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTT-TEEEETTTTEEESCH
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCC-CeeeecccCceeCCH
Confidence 9999999999999999999999999999999888766543333 33345567888999999955 889999999999999
Q ss_pred ccccCCCcHHHHHHHHHcc
Q 012936 426 DSVLEGDLDGFILSYLSAS 444 (453)
Q Consensus 426 ~~vldGdLD~fI~a~l~~~ 444 (453)
++||+||||+||++|+.+.
T Consensus 306 ~~vldGdLd~~I~a~l~~~ 324 (342)
T 1rq0_A 306 QEILDGDLDEIISKLIEHD 324 (342)
T ss_dssp HHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999875
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-38 Score=273.20 Aligned_cols=100 Identities=29% Similarity=0.397 Sum_probs=95.3
Q ss_pred EEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceEEEEeecCceEEEEcCC
Q 012936 277 HRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNE 356 (453)
Q Consensus 277 HRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~e 356 (453)
|||||+|+|+++| |||++|+|+|+.++ +..++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~-~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~ 86 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDY-PALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQT 86 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCC-CCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCC-CccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCC
Confidence 8999999999999 99999999999875 4679999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHHH
Q 012936 357 RSQHQNKASAMGVLQSRVNQLEIA 380 (453)
Q Consensus 357 RSQ~~Nk~~A~~~L~~kL~~~~~~ 380 (453)
|||++||+.||++|++||+++...
T Consensus 87 RSQ~~Nr~~A~~~L~~kL~e~~~~ 110 (115)
T 2rsm_A 87 RSVDQNRKIARKVLQEKVDVFYNS 110 (115)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987643
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.92 E-value=2e-25 Score=193.82 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=67.4
Q ss_pred CCccccCCCCeEEEEeecCCCCCccccccCceEEEE-eecCc------------------------eEEEEcCCCCHHhH
Q 012936 308 STHVQINESDLRIERFRSGGAGGQHANTTDSAVRII-HIPTG------------------------ITATCQNERSQHQN 362 (453)
Q Consensus 308 ~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~-HiPTG------------------------ivv~~q~eRSQ~~N 362 (453)
.+++.|+++||+++|+|||||||||||||+|||+|+ |+||| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 468899999999999999999999999999999998 99998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012936 363 KASAMGVLQSRVNQLE 378 (453)
Q Consensus 363 k~~A~~~L~~kL~~~~ 378 (453)
|+.||++|+++|+++.
T Consensus 92 r~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 92 LAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998653
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.92 E-value=3.1e-25 Score=191.53 Aligned_cols=70 Identities=30% Similarity=0.512 Sum_probs=66.3
Q ss_pred CccccCCCCeEEEEeecCCCCCccccccCceEEEEe------ec-----------------Cc-eEEEEcCCCCHHhHHH
Q 012936 309 THVQINESDLRIERFRSGGAGGQHANTTDSAVRIIH------IP-----------------TG-ITATCQNERSQHQNKA 364 (453)
Q Consensus 309 ~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~H------iP-----------------TG-ivv~~q~eRSQ~~Nk~ 364 (453)
.++.|+++||+++|+|||||||||||||+|||+|+| +| || |+|+||++|||++||+
T Consensus 6 ~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~ 85 (108)
T 2jva_A 6 NNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRA 85 (108)
T ss_dssp SSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHH
T ss_pred cccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHH
Confidence 368899999999999999999999999999999999 99 88 9999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012936 365 SAMGVLQSRVNQLE 378 (453)
Q Consensus 365 ~A~~~L~~kL~~~~ 378 (453)
.|+++|+++|+++.
T Consensus 86 ~Al~rL~~~l~~a~ 99 (108)
T 2jva_A 86 DALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998654
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.88 E-value=2.2e-23 Score=187.36 Aligned_cols=70 Identities=36% Similarity=0.572 Sum_probs=66.2
Q ss_pred CccccCCCCeEEEEeecCCCCCccccccCceEEEE------eecC------------------ceEEEEcCCCCHHhHHH
Q 012936 309 THVQINESDLRIERFRSGGAGGQHANTTDSAVRII------HIPT------------------GITATCQNERSQHQNKA 364 (453)
Q Consensus 309 ~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVri~------HiPT------------------Givv~~q~eRSQ~~Nk~ 364 (453)
.+|.|+++||+++|+|||||||||||||+|+|+|+ |+|+ ||+|+||++|||++||+
T Consensus 6 ~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~ 85 (140)
T 4dh9_Y 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNRE 85 (140)
T ss_dssp SSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHH
T ss_pred CCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHH
Confidence 36889999999999999999999999999999999 7998 59999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012936 365 SAMGVLQSRVNQLE 378 (453)
Q Consensus 365 ~A~~~L~~kL~~~~ 378 (453)
.|+++|.++|+++.
T Consensus 86 ~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 86 AALARLVAMIKELT 99 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998765
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=95.92 E-value=0.046 Score=44.89 Aligned_cols=41 Identities=7% Similarity=0.288 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhhHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLW-DDPVHAGRISREHGSLMGKMK 146 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~w-dD~~ka~kl~KE~s~L~~~v~ 146 (453)
+.+..++++|+.+|+||+|+ +|+.+.+.++.++..++..++
T Consensus 32 e~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 32 EDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999998 699999999999988776443
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.60 E-value=14 Score=33.99 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHH
Q 012936 79 DESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKM 145 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v 145 (453)
+|...+++...++....+..++ +++..+..+|.+.+..|++ |+++++++.+|.+.|...+
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr-----~ql~akr~EL~aL~~a~~~--DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALR-----QQLISKRYEYNALLTASSP--DTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 4456666655565555555553 4566777889999988885 9999999999998877643
No 13
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.89 E-value=1.4e+02 Score=26.70 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhhHHHHHHHHH-HHHHHH
Q 012936 81 SEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLW---DDPVHAGRISREHGSLMGKMKEVKA-FEQELL 156 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~w---dD~~ka~kl~KE~s~L~~~v~~~~~-l~~~l~ 156 (453)
...|+-..+..|.+....- ..++.++..|=.+.+||++. .|...+.+++++..+-...+..|.. +..+++
T Consensus 23 ~~~elik~L~~le~sassD------a~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~ 96 (152)
T 4fla_A 23 LTEELIKALQDLENAASGD------ATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELE 96 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHH------HHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccch------HHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555443322 23556777777788888875 6889999999999888888888874 567788
Q ss_pred HHHHHHHHHh
Q 012936 157 EHIDMIKLAR 166 (453)
Q Consensus 157 d~~el~ELa~ 166 (453)
+-..+.+++.
T Consensus 97 dR~~L~~~L~ 106 (152)
T 4fla_A 97 DRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777764
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.27 E-value=1.7e+02 Score=27.60 Aligned_cols=42 Identities=5% Similarity=0.124 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHH
Q 012936 104 QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEV 148 (453)
Q Consensus 104 ~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~ 148 (453)
+++....+++..+.++... .+++.+..+.+|...++..+...
T Consensus 68 ~i~~~~~ri~~~~~~l~~v---~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 68 TLQDTNAKIASIQKKMSEI---KSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888653 37788999998888777654433
No 15
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=45.60 E-value=26 Score=31.27 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHhhhHH
Q 012936 81 SEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNK-PNLWDDPVHAGRISREHGSLMG 143 (453)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsd-P~~wdD~~ka~kl~KE~s~L~~ 143 (453)
.....+.....==+....|...+ +.+..+|.+|+.+|.. | ..+.+++.+..|+.+++.
T Consensus 46 qR~rYK~~F~~dy~EYk~Lhaev--~~v~~~F~~Ld~~L~~l~---~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 46 QRQLYKRNFDTGLQEYKSLQSVL--DEINKELSRLDKELDDYR---EESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHSC---TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHH
Confidence 44444444443333444444444 5677788888888866 4 456788888888888764
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.47 E-value=2.3e+02 Score=30.33 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 012936 80 ESEGDWKSHAAAIAQSIQVIK 100 (453)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ 100 (453)
..+.+++..|++|++.++.+.
T Consensus 57 kqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHH
Confidence 366677777777777776663
No 17
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=38.03 E-value=2.1e+02 Score=25.41 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 110 VRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 110 ~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
.++..+.+.-.||++-....+..-|-..++.|+..|..|+
T Consensus 97 ~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD 136 (140)
T 1xaw_A 97 DEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYD 136 (140)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444434444444333344444444444444444443
No 18
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=34.63 E-value=1.9e+02 Score=25.30 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHH
Q 012936 105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAF 151 (453)
Q Consensus 105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l 151 (453)
.+.+..=+.+-|..++..++=+|...+..+.++|..++..+..+..-
T Consensus 116 ~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~ 162 (214)
T 1s35_A 116 AKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDK 162 (214)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455556777888888888889999999999999998877766543
No 19
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.17 E-value=2.1e+02 Score=23.43 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012936 91 AIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEH 158 (453)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~ 158 (453)
.|..++..++... +.+...+.+++.++.+|+ |. ++.++|- ..+..|++++..-+.+
T Consensus 5 ~L~~~i~~L~~q~--~~L~~ei~~~~a~L~~~~----~~---~~~~~hI---~~Lh~YNeiKD~gq~L 60 (85)
T 3viq_B 5 QLESRVHLLEQQK--EQLESSLQDALAKLKNRD----AK---QTVQKHI---DLLHTYNEIRDIALGM 60 (85)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHTCSSSC----HH---HHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhccCC----HH---HHHHHHH---HHHHHHhHHHHHHHHH
Confidence 3445555555444 466677888888888763 43 3444443 3455666665544433
No 20
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=30.34 E-value=1.3e+02 Score=26.10 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012936 78 LDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLE 157 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d 157 (453)
+++...+...+++.|+++|..+++.=+. --..+.++..--..|..+ |... + |+..++.+. ..+..
T Consensus 56 ~ee~~~~~~~~~D~lAERI~~LGg~P~~--t~~~~~~~s~i~e~~~~~-~~~e---m------l~~ll~~~~---~~i~~ 120 (159)
T 3iq1_A 56 FEEIYTDLQLKIDELAERILTLSARPMH--SFSGYLKAAQIKEHTDSI-DGRS---S------MQGLVDGFS---ILLHQ 120 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCC--SHHHHHHHCSSCCCCCCC-SHHH---H------HHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHHCCCCccCCCC-CHHH---H------HHHHHHHHH---HHHHH
Confidence 3445666777888888888777765331 111122221111112223 2221 1 222222233 33444
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 012936 158 HIDMIKLAREENDTELELESLEALLTMRR 186 (453)
Q Consensus 158 ~~el~ELa~eE~D~El~~e~~~el~~~~~ 186 (453)
+.+.++++.+..|+-...++.+-+...++
T Consensus 121 ~r~~i~~ae~~~D~~T~dll~~~l~~~Ek 149 (159)
T 3iq1_A 121 QRDILELAGETGDEGTSALMSDYIREQEK 149 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHcCCHHHHHHHHHHHHHHHH
Confidence 55556666666788777666655555444
No 21
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=29.38 E-value=1.4e+02 Score=26.34 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=46.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012936 78 LDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLE 157 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d 157 (453)
+++...+...+++.|+++|..+++.=+. -...+.++...-..|.-+-|.+. + |+..++.+. ..+..
T Consensus 60 ~ee~~~e~~~~~D~lAERI~~LGg~P~~--t~~~~~~~s~i~e~~~~~~~~~e---m------l~~ll~~~~---~~i~~ 125 (164)
T 4eve_A 60 TEEIYEEFADMFDDLAERIVQLGHHPLV--TLSEAIKLTRVKEETKTSFHSKD---I------FKEILEDYK---HLEKE 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCC--CHHHHHHHCCSCCCCCCCCCHHH---H------HHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHHcCCCcCCCCCCCHHH---H------HHHHHHHHH---HHHHH
Confidence 3445666777888888888777765331 11112222110111222212221 1 222233333 33445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 012936 158 HIDMIKLAREENDTELELESLEALLTMRR 186 (453)
Q Consensus 158 ~~el~ELa~eE~D~El~~e~~~el~~~~~ 186 (453)
+.+.++++.++.|+-...++.+-+...++
T Consensus 126 ~r~~i~~aee~~D~~T~dll~~il~~~Ek 154 (164)
T 4eve_A 126 FKELSNTAEKEGDKVTVTYADDQLAKLQK 154 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55666677677788777766665655544
No 22
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=26.12 E-value=3.2e+02 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAF 151 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l 151 (453)
+.+..=+.+.+..++.+++=+|...++.+.++|..+..-+..+..-
T Consensus 116 ~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~ 161 (213)
T 1cun_A 116 EEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDR 161 (213)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788889988899999999999999999887776544
No 23
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=25.66 E-value=3.5e+02 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 126 DDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 126 dD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
-||.+...+..++..|..+..+|.
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 488888888877777776666664
No 24
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=25.35 E-value=1.3e+02 Score=27.25 Aligned_cols=102 Identities=16% Similarity=0.017 Sum_probs=55.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHH-HHHhcCCCC--CCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012936 79 DESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLL-SAELNKPNL--WDDPVHAGRISREHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~l-e~~lsdP~~--wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l 155 (453)
++.+.+....+..|++++..++..-. .-...+.++ ..--..|.- ++..+. |+.+++.|..+ +
T Consensus 61 ee~y~~~~~~~D~iAERi~~LG~~p~--~t~~e~~~~~s~i~e~~~~~~~~~~e~----------l~~l~~d~~~~---~ 125 (179)
T 1zuj_A 61 REIALKEDEWFYLISEQLLDENELVP--TTLDEFVSNHKFIENDPKAKYWTDEAL----------IENFINDFQNQ---N 125 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC--CSHHHHHHHCCSCCCCTTGGGSCHHHH----------HHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHhcCcCCCCCCCCCCCHHHH----------HHHHHHHHHHH---H
Confidence 44666777888888888888876642 222333333 222223432 233322 33344444444 3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 012936 156 LEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALL 197 (453)
Q Consensus 156 ~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL 197 (453)
..+...++++.++.|+....++..-+..+++.+ .-|...|
T Consensus 126 ~~~r~~i~~a~e~~D~~Tadll~~~~~~~EK~~--WmL~a~L 165 (179)
T 1zuj_A 126 LFIGRAIKLAQKEEKFSLELAIRKLYGYNLSII--PYFAGEL 165 (179)
T ss_dssp HHHHHHTHHHHHTTCHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 445556677777788877776666565555432 3344444
No 25
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=24.47 E-value=2.5e+02 Score=29.04 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=3.2
Q ss_pred cceeeec
Q 012936 401 QIRTYVL 407 (453)
Q Consensus 401 ~IRtYn~ 407 (453)
.|++.++
T Consensus 382 ~i~~w~~ 388 (450)
T 3r6n_A 382 KIRAMTI 388 (450)
T ss_dssp HHHTCCH
T ss_pred HHHhhhH
Confidence 4444443
No 26
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=23.68 E-value=2.1e+02 Score=21.22 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHCCCEEEEEeccCCCCCCeeEEEEEEecc------chhcccccccceEEEEEeCCCCCCCc
Q 012936 233 WAQRRGYRVTLMDEMPGEIAGIKRATIKVDGE------YAFGYAKAEVGVHRLVRISPFDSGKR 290 (453)
Q Consensus 233 ~ae~~g~~~eiv~~~~~~~~Giksa~l~i~G~------~ayg~lk~E~GvHRv~Rvsp~~s~gr 290 (453)
.....|..+.-+...... +...+.+.+... .+...|+.-.||..+.|+++++-.+.
T Consensus 25 ~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~~~~~ 86 (88)
T 2ko1_A 25 VISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLEHHHH 86 (88)
T ss_dssp HHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCCCCCC
T ss_pred HHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccccccc
Confidence 344568888776655432 344555555543 34567888899999999999987664
No 27
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=23.43 E-value=3.3e+02 Score=23.78 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012936 104 QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMI 162 (453)
Q Consensus 104 ~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ 162 (453)
+++.+..-+.+.+..++.+++=.|......+.++|..++.-+..+..--..+.....-+
T Consensus 11 ~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L 69 (216)
T 1u5p_A 11 GIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 28
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.89 E-value=3.7e+02 Score=23.17 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012936 105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l 155 (453)
.+.+..=+.+-+..+++++. .|+..++.+.++|..++.-+......-..+
T Consensus 65 ~~el~~Wi~ek~~~a~~~~~-~d~~~v~~ll~kH~afe~El~a~~~~~~~l 114 (161)
T 3lbx_A 65 ADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSEL 114 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677788887 899999999999999888777665443333
No 29
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=21.87 E-value=1.1e+02 Score=23.49 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHH
Q 012936 83 GDWKSHAAAIAQSIQVIKKR-LQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEV 148 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~ 148 (453)
.++++.+..|+.++..+++. -.+....+++...|.+|..-.--.+| ....+-||-+.+.+.+..|
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnp-evealrkeaaairdelqay 70 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNP-EVEALRKEAAAIRDELQAY 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSS-TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHHHh
Confidence 45788888888888877665 35667777888888777532222232 1234556666555555544
No 30
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=21.82 E-value=3e+02 Score=23.56 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012936 78 LDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLE 157 (453)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d 157 (453)
+++...+...+++.|+++|-.+++.=.. --..+.++...-..|.-+.|... + |+..++.+. ..+..
T Consensus 43 ~ee~~~~~~~~~D~iAERI~~LGg~P~~--t~~~~~~~s~i~e~~~~~~~~~e---m------l~~~l~~~~---~~i~~ 108 (152)
T 3kwo_A 43 TEKAYEEMAELFDSCAERVLQLGEKAIT--CQKVLMENAKSPKVAKDCFTPLE---V------IELIKQDYE---YLLAE 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCC--CHHHHHHHCCSCCCCCSCBCHHH---H------HHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHhHCCCCCCCCCCCCHHH---H------HHHHHHHHH---HHHHH
Confidence 3446667778888888888888775431 11112222111111222212221 1 222223333 33445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 012936 158 HIDMIKLAREENDTELELESLEALLTMRRK 187 (453)
Q Consensus 158 ~~el~ELa~eE~D~El~~e~~~el~~~~~~ 187 (453)
+.+.++++.+..|+-...++.+-+...++.
T Consensus 109 ~r~~i~~a~~~~D~~T~dll~~~l~~~Ek~ 138 (152)
T 3kwo_A 109 FKKLNEAAEKESDTTTAAFAQENIAKYEKS 138 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 555666776777887777766666555443
No 31
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.71 E-value=92 Score=25.62 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCCCccccc--cCceEEEEeecCc----eEEEEcCCCCHHhHHHHHHHHHHHHHHHHHH
Q 012936 327 GAGGQHANT--TDSAVRIIHIPTG----ITATCQNERSQHQNKASAMGVLQSRVNQLEI 379 (453)
Q Consensus 327 GpGGQ~VNk--t~SaVri~HiPTG----ivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~ 379 (453)
|+||-++++ .+|.|+|.-.+.| .|.-+-. + .|-+.|..++...+.+.+.
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~---~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL---A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC---H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC---H-HHHHHHHHHHHHHHhhHHH
Confidence 899999984 4578887755555 3332222 2 5677888888887755443
No 32
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=21.48 E-value=1.7e+02 Score=26.63 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=54.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHH-HHHhcCCCC--CCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012936 79 DESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLL-SAELNKPNL--WDDPVHAGRISREHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~l-e~~lsdP~~--wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l 155 (453)
++.+.+....+..|++++..++..-. .-...+.++ ..--..|.- ++..+. |+.+++.|..+ +
T Consensus 62 ee~y~~~~~~~D~iAERi~~LG~~p~--~t~~e~~~~~s~i~e~~~~~~~~~~e~----------l~~L~~d~~~~---~ 126 (182)
T 1zs3_A 62 REIAQREVEYFFKISDLLLDENEIVP--STTEEFLKYHKFITEDPKAKYWTDEDL----------LESFIVDFQAQ---N 126 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC--CSHHHHHHHCCSCCCCGGGGGSCHHHH----------HHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHhcCcCCCCCCCCCCCHHHH----------HHHHHHHHHHH---H
Confidence 44666777888888888888876642 222233333 211222332 222222 33344444444 3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcC
Q 012936 156 LEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALL 197 (453)
Q Consensus 156 ~d~~el~ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL 197 (453)
..+...++++.++.|+....++..-+..+++. -.-|...|
T Consensus 127 ~~~r~~i~~A~e~~D~~Tadll~~~~~~~EK~--~WmL~a~L 166 (182)
T 1zs3_A 127 MFITRAIKLANKEEKFALAAGVVELYGYNLQV--IRNLAGDL 166 (182)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHhHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 45555677777778887777666656555543 23345555
No 33
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=21.43 E-value=4.8e+02 Score=24.03 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHH
Q 012936 107 NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAF 151 (453)
Q Consensus 107 ~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l 151 (453)
.+..=+.+.+..++.+++..|...++.+.++|..+..-+..+..-
T Consensus 226 ~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~ 270 (322)
T 1u4q_A 226 EEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDR 270 (322)
T ss_dssp HHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667778889999999999999999999999887766543
No 34
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=21.42 E-value=4.2e+02 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 012936 106 KNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149 (453)
Q Consensus 106 ~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~ 149 (453)
..+..-+.+.+..++.+++-.|...+..+.++|..+...++.+.
T Consensus 23 ~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~ 66 (218)
T 3fb2_A 23 RDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARA 66 (218)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445578888889888999999999999999999998777544
No 35
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=21.42 E-value=4.2e+02 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.044 Sum_probs=1.4
Q ss_pred ccccccccccccccC
Q 012936 48 CRWFSTQAAVEPSTS 62 (453)
Q Consensus 48 ~~~~~~~~~~~~~~~ 62 (453)
.-.||+|.|..|+|.
T Consensus 3 lvsC~~p~a~~ppty 17 (133)
T 3ls0_A 3 LGSCSSPQVEIPTTY 17 (133)
T ss_dssp -------------CC
T ss_pred CccCCCCCCCCCCCc
Confidence 446888888777776
No 36
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=21.21 E-value=4e+02 Score=23.03 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012936 107 NLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQEL 155 (453)
Q Consensus 107 ~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l 155 (453)
.+..=+...|..|+++++=++...+..+.++|..++..+..+.+--..+
T Consensus 121 ~~~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L 169 (185)
T 3lbx_B 121 VAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169 (185)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334445566777777777788888899999888887776665543333
No 37
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=21.15 E-value=2.6e+02 Score=24.41 Aligned_cols=16 Identities=13% Similarity=0.136 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhHHHH
Q 012936 130 HAGRISREHGSLMGKM 145 (453)
Q Consensus 130 ka~kl~KE~s~L~~~v 145 (453)
.++++.+++..+...+
T Consensus 41 eaq~li~eF~~~Q~~~ 56 (151)
T 2pih_A 41 KVSTIVNQIKALQKQA 56 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555444433
No 38
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=20.81 E-value=87 Score=30.12 Aligned_cols=29 Identities=3% Similarity=-0.070 Sum_probs=14.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhhHHHHHH
Q 012936 119 LNKPNLWDDPVHAGRISREHGSLMGKMKE 147 (453)
Q Consensus 119 lsdP~~wdD~~ka~kl~KE~s~L~~~v~~ 147 (453)
+.++++-.|...+..|.|+|..++.-+..
T Consensus 140 ~~s~d~g~d~~s~~~LLkkh~~le~~l~~ 168 (283)
T 3pe0_A 140 KYSCDRSATVTRLEDLLQDAQDEKEQLNE 168 (283)
T ss_dssp HHHSCCCSHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444443333
Done!