RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012936
(453 letters)
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 491 bits (1266), Expect = e-174
Identities = 150/362 (41%), Positives = 227/362 (62%), Gaps = 2/362 (0%)
Query: 84 DWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143
+ + + V++ L + RL ++AEL +P++W++P A + +E SL
Sbjct: 6 PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEA 65
Query: 144 KMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDP 203
+ + +Q L + +++LA E +D E E++ L + K + E + SGE D
Sbjct: 66 VVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDS 125
Query: 204 CSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDG 263
CY+++QAG+GGTE+ DWASM+ +MY WA+ RG++ +++E GE+AGIK TIK+ G
Sbjct: 126 ADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISG 185
Query: 264 EYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERF 323
+YA+G+ + E GVHRLVR SPFDSG RRHTSF++ V P D ++IN +DLRI+ +
Sbjct: 186 DYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEV-DDDIDIEINPADLRIDVY 244
Query: 324 RSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQA 383
R+ GAGGQH N T+SAVRI HIPTGI CQN+RSQH+NK AM +++++ ++E+ ++
Sbjct: 245 RASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKN 304
Query: 384 QMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 443
+ +DI WG+QIR+YVL +KDLRT E + +VL+G LD FI + L A
Sbjct: 305 AEKQAMEDNKSDIGWGSQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363
Query: 444 SL 445
L
Sbjct: 364 GL 365
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 487 bits (1257), Expect = e-172
Identities = 140/364 (38%), Positives = 204/364 (56%), Gaps = 6/364 (1%)
Query: 90 AAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149
+AQ ++ + RL L L P+LW+DP A ++S+E L + +
Sbjct: 4 ERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFR 63
Query: 150 AFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIE 209
+ E +L +++++ E L+ E L +K E LL+ + +
Sbjct: 64 SLESDLQGLLELMEELPAEEREALKPE----LEEAAKKLDELYHQTLLNFPHAEKNAILT 119
Query: 210 VQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGY 269
+Q GAGGTE+ DWA M+L+MY +A+R+G++V ++D PG AGI A I V GE A+G
Sbjct: 120 IQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGL 179
Query: 270 AKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAG 329
E GVHRLVR SPFD+ RRHTSFA V VIP D V + +LRI+ R+ G G
Sbjct: 180 LSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEV-DEEVEVVLKPEELRIDVMRASGPG 238
Query: 330 GQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEH 389
GQ NTTDSAVR++H+PTGIT TCQ RSQ +NK A+ +L++R+ +LE ++ +
Sbjct: 239 GQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKAL 298
Query: 390 TQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDE 449
+ I WG+QIR+YVL VKD RT DP++VL+GDL I + L + +
Sbjct: 299 RGEVRPIEWGSQIRSYVLDK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRRQ 357
Query: 450 GGQQ 453
G ++
Sbjct: 358 GTEE 361
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 254 bits (652), Expect = 2e-81
Identities = 108/353 (30%), Positives = 181/353 (51%), Gaps = 31/353 (8%)
Query: 99 IKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSL---MGKMKEVKAFEQ-- 153
+ +L L L A L+ P + D +SR + + +G ++E + +
Sbjct: 1 MLDKLD--RLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDL 58
Query: 154 ----ELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALL--SGELDPCSCY 207
LL+ ++ ++A+ E E+L A R+++ EKEL+ L +D
Sbjct: 59 EQAESLLDDPELKEMAKAE------REALLA----RKEALEKELERHLLPKDPMDERDAI 108
Query: 208 IEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAF 267
+E++AG GG E+ +A + MY +A+ G+ ++D P ++ G + +V G A+
Sbjct: 109 VEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAY 168
Query: 268 GYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGG 327
G K E GVHR+ R+ ++ R HTS A VAV+P + + +N ++RI+ R+ G
Sbjct: 169 GTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE--EDFALNMDEIRIDVMRASG 226
Query: 328 AGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNA 387
GGQ NTTDSAVR++H+PTGI TCQ+ RSQ +N+ A+ +L+SR+ +++ A +A+
Sbjct: 227 PGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLR 286
Query: 388 EHTQSLTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 437
+ + I G +IRTY P V D R + D + VL G L +
Sbjct: 287 KTRLAQ--IGTGERSEKIRTYN-FPQSRVTDHRIGFTTHDLEGVLSGHLTPIL 336
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 254 bits (652), Expect = 3e-81
Identities = 101/353 (28%), Positives = 167/353 (47%), Gaps = 27/353 (7%)
Query: 99 IKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSL---MGKMKEVKAFEQEL 155
I +LQ + R L L+ P++ D +SRE + + +E K Q +
Sbjct: 15 IYDQLQ--AVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNI 72
Query: 156 LEHIDMIKLAREENDTEL------ELESLEALLTMRRKSKEKELDALL--SGELDPCSCY 207
+ +M + D EL EL++ + ++ E++L LL D +
Sbjct: 73 ADAQEM--IKDASGDPELEEMAKEELKNSKV----AKEEYEEKLRFLLLPKDPNDDKNII 126
Query: 208 IEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAF 267
+E++ AGG E+ +A +L MY+ +A+ +G++ +M+ + G+K V G+ +
Sbjct: 127 LEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVY 186
Query: 268 GYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGG 327
K E G HR+ R+ +S R HTS A V V+P + +I+ DLR++ + + G
Sbjct: 187 SKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEE--VEYEIDPKDLRVDIYHASG 244
Query: 328 AGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNA 387
AGGQ+ N +AVRIIH+PT I Q ER+Q +N+ AM ++++RV
Sbjct: 245 AGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQD 304
Query: 388 EHTQSLTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 437
+S + G+ +IRTY P V D R + DS+L G LD I
Sbjct: 305 AERKST--VGTGDRSERIRTYN-FPQNRVTDHRIGLTLQKLDSILSGKLDEVI 354
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 252 bits (646), Expect = 8e-81
Identities = 111/332 (33%), Positives = 178/332 (53%), Gaps = 23/332 (6%)
Query: 111 RLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREEND 170
+ + L +P+L + + E+ + +E++ + E + I+L REE +
Sbjct: 4 KKKEIEKLLARPDLTPEQMK--NYGMEYAKI----EEIENITNRIKETQEFIELLREEGE 57
Query: 171 TELELESLEALLTMRRKSKEKELDALLSGEL--DPCSCYIEVQAGAGGTESMDWASMVLQ 228
ELE+E E L ++ LL +E++ G GG E+ +A + +
Sbjct: 58 NELEIEKYEKEL-------DQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFR 110
Query: 229 MYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSG 288
MY +A+R+G+ + + + ++ GI+ V G+ A+G K E GVHR+ R+ +SG
Sbjct: 111 MYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESG 170
Query: 289 KRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTG 348
R HTS A VAV+P + ++I DL+IE FR+ G GGQ+ N T+SAVRI H+PTG
Sbjct: 171 GRIHTSTATVAVLPEIEE--KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG 228
Query: 349 ITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGN---QIRTY 405
I +CQNERSQ+QNK +A+ +L++R+ QL+ ++ + ++ +S I G +IRTY
Sbjct: 229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQ--IGTGERSEKIRTY 286
Query: 406 VLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 437
P V D R NY +L+GDLD I
Sbjct: 287 NF-PQNRVTDHRINYTSYRLQEILDGDLDEII 317
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 252 bits (645), Expect = 2e-80
Identities = 121/353 (34%), Positives = 184/353 (52%), Gaps = 30/353 (8%)
Query: 99 IKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSL---MGKMKEVKAFEQ-- 153
I +L+ L+ R + A L D +SRE+ L + + ++
Sbjct: 5 IVAKLE--ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDI 62
Query: 154 ----ELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALL--SGELDPCSCY 207
+L+ +M ++A++E L + + + E++L LL D + +
Sbjct: 63 ETAQMMLDDPEMREMAQDE------LREAKE----KSEQLEQQLQVLLLPKDPDDERNAF 112
Query: 208 IEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAF 267
+EV+AG GG E+ +A + +MY +A+ R +RV +M GE G K K+ G+ +
Sbjct: 113 LEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVY 172
Query: 268 GYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGG 327
G K E G HR+ R+ +S R HTS VAV+P D+ +N +DLRI+ FRS G
Sbjct: 173 GRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAEL-PDVNPADLRIDTFRSSG 231
Query: 328 AGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNA 387
AGGQH NTTDSA+RI H+PTGI CQ+ERSQH+NKA A+ VL +R++ E+A++ Q A
Sbjct: 232 AGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEA 291
Query: 388 EHTQSLTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFI 437
++L + G+ + RTY P V D R N + D V+EG LD I
Sbjct: 292 STRRNL--LGSGDRSDRNRTYN-FPQGRVTDHRINLTLYRLDEVMEGKLDMLI 341
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 151 bits (383), Expect = 8e-45
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 277 HRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTT 336
RL + + V V D + +NES+L + + G GGQ N T
Sbjct: 11 LRLQEKPALLFP---GMAASTVQVAGRK-DYPALLPLNESELEEQFVKGHGPGGQATNKT 66
Query: 337 DSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQ 382
+ V + H+P+GI C RS QN+ A VLQ +V+ +
Sbjct: 67 SNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGP 112
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 94.4 bits (235), Expect = 2e-23
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 30/141 (21%)
Query: 308 STHVQINESDLRIERFRSGGAGGQHANTTDSAVRI------------------------I 343
S HV I + +L I R+ GAGGQH N T +A+ + I
Sbjct: 5 SRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLI 64
Query: 344 HIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIR 403
I Q RSQ N+ +A+ L + + +L ++A+ T++ + ++ +
Sbjct: 65 SSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQ 124
Query: 404 TYVLHPYRMVKDLRTNYEVSD 424
VK +R
Sbjct: 125 KS------SVKAMRGKVRSGR 139
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
genomics, PSI-2, protein STRU initiative; NMR
{Pseudomonas syringae PV}
Length = 108
Score = 71.5 bits (175), Expect = 1e-15
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 308 STHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTG------------------- 348
S +V + ++++ + R+ GAGGQ+ N SA+ +
Sbjct: 5 SNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRI 64
Query: 349 -----ITATCQNERSQHQNKASAMGVLQSRVNQ 376
I Q R+Q QN+A A+ L +
Sbjct: 65 TSDGVIVLKAQQYRTQEQNRADALLRLSELIVN 97
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, immature carcinoma
transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Length = 112
Score = 60.5 bits (146), Expect = 1e-11
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 25/91 (27%)
Query: 311 VQINESDLRIERFRSGGAGGQHANTTDSAVRI-------------------------IHI 345
I L I RS G GGQ+ N +S + I+
Sbjct: 15 SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 74
Query: 346 PTGITATCQNERSQHQNKASAMGVLQSRVNQ 376
+ T ++ R Q +N A + ++ + +
Sbjct: 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 5e-06
Identities = 71/496 (14%), Positives = 140/496 (28%), Gaps = 164/496 (33%)
Query: 27 NGLLRLKNP----------CGST----EVLL-------FPRGCRWFSTQAAVEPSTSDGL 65
LL L+ G T +V L W + + P
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP------ 195
Query: 66 TVDGIVASQWTILDESEGDWKS---HAAAIAQSIQVIKKRL----QWKNLNVRLNLLSAE 118
+ ++ +L + + +W S H++ I I I+ L + K L +L
Sbjct: 196 --ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-- 251
Query: 119 LNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFE---QELL-----EHIDMIKLAREEND 170
N+ + K AF + LL + D + A
Sbjct: 252 ----NVQN------------------AKAWNAFNLSCKILLTTRFKQVTDFLSAATT--- 286
Query: 171 TELELESLEALLTMRRKSKEKELDALLSGELDPCSCY---IEVQAGAGGTESMDWASM-- 225
T + L+ LT E+ +LL LD C EV S+ S+
Sbjct: 287 THISLDHHSMTLT------PDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 226 VLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 285
L + +W ++T I+ L + P
Sbjct: 340 GLATWDNWKHVNCDKLT--------------TIIESS----------------LNVLEPA 369
Query: 286 DSGKRRHTSFAAVAVIPNSGDSSTHV-QI-------NESDLRIERFRSGGAGGQHANTTD 337
+ R+ F ++V P S T + + ++ + + + + +
Sbjct: 370 EY--RKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--E 423
Query: 338 SAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQ------------------LEI 379
S + I I + +NE + H++ + ++ + L+
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 380 ARQAQMNAEHTQSLTDISW-GNQIR---------TYVLHPYRMVKDLRTNYE----VSDP 425
+ D + +IR +L+ ++ L+ Y+ +DP
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN---TLQQLK-FYKPYICDNDP 539
Query: 426 D-SVLEGDLDGFILSY 440
L + F+
Sbjct: 540 KYERLVNAILDFLPKI 555
Score = 47.2 bits (111), Expect = 1e-05
Identities = 61/445 (13%), Positives = 133/445 (29%), Gaps = 140/445 (31%)
Query: 53 TQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRL 112
QA +E + + +DG++ S T + A + S +V K + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWV----------ALDVCLSYKVQCKM----DFKI-- 184
Query: 113 NLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTE 172
W ++ + +++ + Q+LL ID +R ++ +
Sbjct: 185 -----------FW---LNLKNCNSPE-TVLEML-------QKLLYQIDPNWTSRSDHSSN 222
Query: 173 LELESLEALLTMRRKSKEKEL-DALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYK 231
++L +RR K K + LL L VQ A + + + +L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLV--LL------NVQN-AKAWNAFNLSCKIL---- 269
Query: 232 SWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAE--------VGV------H 277
+T + + T ++ E +
Sbjct: 270 ---------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 278 RLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTD 337
++ +P +++I S I + + ++ + +
Sbjct: 321 EVLTTNPR-----------RLSIIAES--------IRDGLATWDNWKHVNCD-KLTTIIE 360
Query: 338 SAVRI-------------------IHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLE 378
S++ + HIPT + + + K+ M V+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHKYSL 416
Query: 379 IARQAQMNAEHTQSLTDISWGNQIRT-------YVLHPYRMVKDLRTNYEVS---DPDSV 428
+ +Q E T S+ I + Y LH + + +Y + D D +
Sbjct: 417 VEKQ---PKESTISIPSI----YLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDL 464
Query: 429 LEGDLDGFILSYLSASLDKDEGGQQ 453
+ LD + S++ L E ++
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER 489
Score = 40.6 bits (94), Expect = 0.001
Identities = 62/396 (15%), Positives = 112/396 (28%), Gaps = 123/396 (31%)
Query: 2 RRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCR------------ 49
+ L+ + + Y N LL L N + F C+
Sbjct: 231 QAELRRLLKSKPYE-----------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 50 WFSTQAAVEPS---TSDGLTVD---GIVASQWTILDESEGDWKSHA--------AAIAQS 95
+ S S S LT D ++ LD D + IA+S
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 96 IQVIKKRLQ-WKNLNVR---------LNLLSAELNKPN--------------------LW 125
I+ WK++N LN+L + +W
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 126 DDPVHAGRISREHGSLMGKMKEVKAFEQEL------LEHIDMIKLAREENDTELELESLE 179
D I + ++ K+ + E++ + I + + EN+ L
Sbjct: 397 FDV-----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----R 447
Query: 180 ALLTMRRKSKEKELDALLSGELDPCSCYIEVQAG-----AGGTESMDWASMVLQMYKSWA 234
+++ K + D L+ LD Y G E M MV ++ +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FL 503
Query: 235 QRRGYRVTLMDEMPGEIAGI-------KRATIKVDGEYAFGYAKAEVGVHRLVR-ISPF- 285
+++ + G I K D +Y RLV I F
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----------ERLVNAILDFL 552
Query: 286 -----DSGKRRHTSFAAVAVI-PNSG---DSSTHVQ 312
+ ++T +A++ + ++ VQ
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 5e-06
Identities = 72/414 (17%), Positives = 126/414 (30%), Gaps = 147/414 (35%)
Query: 4 NLKDWILAPR------YCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAV 57
N+ +W+ P Y +L IS G+++L + + ++L G T +
Sbjct: 214 NILEWLENPSNTPDKDY-LLSIPIS-CPLIGVIQLAHYVVTAKLL----GF----TPGEL 263
Query: 58 EPSTSDGLTV--DGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLL 115
G T G+V + + W+S ++ ++I V L + + VR
Sbjct: 264 RSYLK-GATGHSQGLVTA---VAIAETDSWESFFVSVRKAITV----LFF--IGVR---- 309
Query: 116 SAELNKPNLWDDPVHAGRISREHG-SLMGKMKEVKAFEQELLE-HIDMI-KLAREENDTE 172
PN P S E+ + M + QE ++ +++ E
Sbjct: 310 -CYEAYPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 173 LEL-------------ESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTES 219
+ L +SL L RK+K A +G
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----------------------APSG---- 401
Query: 220 MDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRL 279
+D Q R +P +R K+ +R
Sbjct: 402 LD-------------QSR---------IPFS----ER---KL------------KFSNRF 420
Query: 280 VRIS-PFDSGKRRHTSF--AAVAVIPNSGDSSTHVQINESDLRI--------ERFRSGGA 328
+ ++ PF H+ A +I N +V N D++I R
Sbjct: 421 LPVASPF------HSHLLVPASDLI-NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV--- 470
Query: 329 GGQHANTTDSAVR-IIHIPTGITATCQNERSQH-----QNKASAMGVLQSRVNQ 376
+ ++ V II +P T Q + + H AS +GVL R
Sbjct: 471 --LSGSISERIVDCIIRLPVKWETTTQFKAT-HILDFGPGGASGLGVLTHRNKD 521
Score = 47.7 bits (113), Expect = 7e-06
Identities = 75/471 (15%), Positives = 134/471 (28%), Gaps = 168/471 (35%)
Query: 30 LRLKNPCGSTEV-LLFPRGCRWFSTQ-----AAVEPSTSDGLTVDGIVASQWTILDESEG 83
L L + GS E LL P + ++Q + P ++G D DE
Sbjct: 9 LTLSH--GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----------DEPT- 55
Query: 84 DWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143
+ A + + + + ++ + +L+ L
Sbjct: 56 ---TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT----------------------- 89
Query: 144 KMKEVKAFEQELLEHIDMI-----KLAREENDTELELESL-----EALLTMRRKSKEKEL 193
FE LE D I KL +E + T ++ + L A + +R +K
Sbjct: 90 ------EFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 194 DALLSGELDPCSCYIEVQAGA-------GG--------TESMDWASMVLQ-MYKSWAQRR 237
AL V G GG E L+ +Y++
Sbjct: 143 SALFRA----------VGEGNAQLVAIFGGQGNTDDYFEE--------LRDLYQT----- 179
Query: 238 GYRV---TLMDEMPGEIAGIKRATIKVDGEYAFGY------------------AKAEV-- 274
Y V L+ ++ + R T+ + + G +
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 275 ---GV----H-----RLVRISPFD-----SGKRRHTSFAAVAVIPNSGDSSTH-VQINES 316
GV H +L+ +P + G H+ AV DS
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 317 DLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAM----GVLQS 372
+ + F G + T P+ + + +N + S M + Q
Sbjct: 299 AITV-LFFIGVRCYEAYPNTSLP------PSILEDSLENN----EGVPSPMLSISNLTQE 347
Query: 373 RVNQLEIARQAQMNAE-HTQSLTDISWGNQIRTYVL--HP---YRMVKDLR 417
Q++ + N+ +IS N + V+ P Y + LR
Sbjct: 348 ---QVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Score = 40.8 bits (95), Expect = 0.001
Identities = 30/222 (13%), Positives = 70/222 (31%), Gaps = 93/222 (41%)
Query: 17 LGENISGF---GSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVAS 73
+ E+ + + GLL T+ TQ A+ ++ A
Sbjct: 1710 INEHSTSYTFRSEKGLLSA------TQF-----------TQPAL-------TLME--KA- 1742
Query: 74 QWTILDESEGDWKS------H------A-AAIAQS------IQVIKKRLQWKNLNVRLNL 114
+ L +S+G + H A A++A ++V+ R +
Sbjct: 1743 AFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR----------GM 1791
Query: 115 LSAELNKPNLWDDPVHAGRISREHGSLM----GKMKEVKAFEQELLEHIDMIKLAREEND 170
V + R + ++ G++ +F QE L+++ ++ +
Sbjct: 1792 TMQVA---------VPRDELGRSNYGMIAINPGRV--AASFSQEALQYV--VERVGKRTG 1838
Query: 171 TELE----------------LESLEALLTMRRKSKEKELDAL 196
+E L +L+ + + K +++D +
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 36.6 bits (84), Expect = 0.022
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 16/88 (18%)
Query: 358 SQHQNKASAMGVLQSRVNQLEIARQAQMNA-EHTQ-----SLTDISWGNQIRTYVLHPYR 411
SQ Q MG + A+ A H + S+ DI N + +
Sbjct: 1626 SQEQG----MG--MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 412 MVKDLRTNYEVSDPDSVLEGDLDGFILS 439
K +R NY + E +DG + +
Sbjct: 1680 KGKRIRENY----SAMIFETIVDGKLKT 1703
>3u02_A Putative transcription-associated protein TFIIS; structural
genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A
{Pyrococcus furiosus dsm 3638}
Length = 252
Score = 32.2 bits (73), Expect = 0.26
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 9/179 (5%)
Query: 272 AEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQ 331
+ RL+R++P K R A++ + + I R
Sbjct: 34 EPLDFPRLIRLNPNVPYKTRGNGAVAMSFKIDEEKIKEVKTLV-----IRYVRELADIDH 88
Query: 332 HANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQ 391
I +P + +H A V + ++ + +
Sbjct: 89 ENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKFKLGRGII---G 145
Query: 392 SLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDEG 450
L I + + TY L YR + T V +SV D + +Y + K
Sbjct: 146 GLAAIGYPLEKFTYELLAYRKREYWGTPRRV-IKESVFYADKWSYPFTYDNVDPYKRTV 203
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell
adhesion, cell junction, cell shape, cytoplasm,
cytoskeleton; NMR {Homo sapiens}
Length = 119
Score = 29.8 bits (67), Expect = 0.75
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 27/84 (32%)
Query: 241 VTLMDEMPGE----IAGIKRATIKV----DGEYAFGYAKAEVGVHRL-VRI-------SP 284
+ + G + G +A I DG Y E G + + ++ SP
Sbjct: 41 IWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSP 100
Query: 285 FDSGKRRHTSFAAVAVIPNSGDSS 308
F V V S D+
Sbjct: 101 FV-----------VPVASLSDDAR 113
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 162 IKLAREENDTELEL--ESLEALLTMRRKSKEKELD 194
I+ REE L+ + + + R+ +K+L+
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 97 QVIKKRLQWKNLNVRLNLLSAELNKPNL 124
Q +KK L L L + + + P L
Sbjct: 20 QALKK------LQASLKLYADD-SAPAL 40
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear
receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1
d.65.1.1
Length = 213
Score = 28.6 bits (63), Expect = 3.4
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 53 TQAAVEP-STSDGLTVDGIVASQ-WTILDESEGDWKSHAA 90
T+AAV+ ++ GL DGI + + + + D +
Sbjct: 46 TKAAVQRFQSAYGLAADGIAGPATFNKIYQLQDDDCTPVN 85
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 29.0 bits (65), Expect = 3.5
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 187 KSKEKELDALLSGELDPCSCYIE-VQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMD 245
+ E L ++ +D I+ + + D+ + ++ + ++
Sbjct: 43 QKPEAFLKKAVAS-MDNGFSKIDSLLDEPIPSYGFDYT--LYKVLDNDTAYNALISYVVP 99
Query: 246 EMPGEIAGIKRATI--KVDGE 264
P E AG++R ++G+
Sbjct: 100 GSPAEEAGLQRGHWIMMMNGD 120
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi
anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces
cerevisiae}
Length = 88
Score = 26.9 bits (59), Expect = 4.1
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 133 RISREHGSLMGKMKEV---KAFEQELLEHIDMIKLAREENDTELELESLEAL 181
+I+ E ++ K ++ +A + L H D+ +++ EL + LE +
Sbjct: 21 KIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 28.6 bits (65), Expect = 4.2
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 214 AGGTESMDWASMVLQMYKSWAQRRGYR---VTLMDEM 247
GG E+M + ++ + R G R +D M
Sbjct: 117 VGGAENMSMSPYLVP-----SARYGARMGDAAFVDSM 148
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 28.6 bits (65), Expect = 4.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 214 AGGTESMDWASMVLQMYKSWAQRRGYR---VTLMDEM 247
AGG ESM A + R G + ++D M
Sbjct: 113 AGGMESMSMAPHCAHL------RGGVKMGDFKMIDTM 143
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 28.2 bits (64), Expect = 5.6
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 214 AGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPG 249
G ESM A + G + + D G
Sbjct: 113 GSGVESMSRAPYAVP-KPERGFPTG-NLVMYDTTLG 146
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 28.2 bits (64), Expect = 5.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 214 AGGTESMDWASMVLQMYKSWAQRRGYR---VTLMDEM 247
AGG E+M A + + R G + + L D +
Sbjct: 116 AGGMENMSKAPHLAYL------RTGVKIGEMPLTDSI 146
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 28.2 bits (64), Expect = 6.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 214 AGGTESMDWASMVLQMYKSWAQRRGYR---VTLMDEM 247
AGGTE+M A ++ R G + +T++D M
Sbjct: 115 AGGTENMSQAPYIVP-----TARFGSKMGNITMVDSM 146
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 27.9 bits (61), Expect = 6.7
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 145 MKEVKAFEQELLEHIDMIKLAREENDTELE-LESLEALLTMRRKSKEKELDAL 196
M E+ ++ + E + + E+E + L ++EL
Sbjct: 1 MSELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKS 53
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 27.9 bits (61), Expect = 7.1
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 112 LNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKE--VKAFEQELLEHIDMIKLAREEN 169
++ ++ L+ + + +EH + ++K + E L + LA +E
Sbjct: 32 IDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDL-VAETYDLASQEA 90
Query: 170 DTELELESLEALLTMRRKSKEKELDALLSGELDP 203
+L E LE + + + + L +
Sbjct: 91 KDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTS 124
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding,
lactic acid bacteria, DNA binding protein; 2.70A
{Lactococcus lactis} SCOP: a.25.1.1
Length = 182
Score = 27.1 bits (60), Expect = 8.3
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 148 VKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKE---LDALL 197
+ F+ + + IKLA +E +L A + + L L
Sbjct: 119 IVDFQAQNMFITRAIKLANKEEK-----FALAAGVVELYGYNLQVIRNLAGDL 166
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 27.5 bits (60), Expect = 9.9
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 4/138 (2%)
Query: 53 TQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRL 112
+ S + + +DE W + Q +++ L ++ N RL
Sbjct: 309 QNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERL 368
Query: 113 -NLLSAELNKPNLW---DDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREE 168
+A+ N W A + G+L +M ++K +E ++ + + I +
Sbjct: 369 RRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGD 428
Query: 169 NDTELELESLEALLTMRR 186
+ E + T
Sbjct: 429 HQLIQEALVFDNKHTNYT 446
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.385
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,963,092
Number of extensions: 421070
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 933
Number of HSP's successfully gapped: 43
Length of query: 453
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 356
Effective length of database: 3,993,456
Effective search space: 1421670336
Effective search space used: 1421670336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)