RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012936
(453 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 293 bits (751), Expect = 7e-97
Identities = 151/360 (41%), Positives = 228/360 (63%), Gaps = 2/360 (0%)
Query: 86 KSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKM 145
+ + + V++ L + RL ++AEL +P++W++P A + +E SL +
Sbjct: 5 NNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVV 64
Query: 146 KEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCS 205
+ +Q L + +++LA E +D E E++ L + K + E + SGE D
Sbjct: 65 DTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSAD 124
Query: 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEY 265
CY+++QAG+GGTE+ DWASM+ +MY WA+ RG++ +++E GE+AGIK TIK+ G+Y
Sbjct: 125 CYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDY 184
Query: 266 AFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRS 325
A+G+ + E GVHRLVR SPFDSG RRHTSF++ V P D ++IN +DLRI+ +R+
Sbjct: 185 AYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLRIDVYRA 243
Query: 326 GGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQM 385
GAGGQH N T+SAVRI HIPTGI CQN+RSQH+NK AM +++++ ++E+ ++
Sbjct: 244 SGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAE 303
Query: 386 NAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL 445
+ +DI WG+QIR+YVL R +KDLRT E + +VL+G LD FI + L A L
Sbjct: 304 KQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 237 bits (605), Expect = 3e-75
Identities = 114/338 (33%), Positives = 172/338 (50%), Gaps = 4/338 (1%)
Query: 108 LNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLARE 167
L+ R + A L D +SRE+ L + ++Q + + +
Sbjct: 2 LHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDD 61
Query: 168 ENDTEL-ELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMV 226
E+ + E EA + ++ ++ L D + ++EV+AG GG E+ +A +
Sbjct: 62 PEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDL 121
Query: 227 LQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFD 286
+MY +A+ R +RV +M GE G K K+ G+ +G K E G HR+ R+ +
Sbjct: 122 FRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATE 181
Query: 287 SGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIP 346
S R HTS VAV+P + +N +DLRI+ FRS GAGGQH NTTDSA+RI H+P
Sbjct: 182 SQGRIHTSACTVAVMPEL-PDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLP 240
Query: 347 TGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLT-DISWGNQIRTY 405
TGI CQ+ERSQH+NKA A+ VL +R++ E+A++ Q A ++L ++ RTY
Sbjct: 241 TGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTY 300
Query: 406 VLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 443
P V D R N + D V+EG LD I +
Sbjct: 301 NF-PQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQE 337
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 223 bits (570), Expect = 3e-70
Identities = 113/338 (33%), Positives = 180/338 (53%), Gaps = 15/338 (4%)
Query: 111 RLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREEND 170
+ + L +P+L + E+ + +E++ + E + I+L REE +
Sbjct: 4 KKKEIEKLLARPDLTPE--QMKNYGMEYAKI----EEIENITNRIKETQEFIELLREEGE 57
Query: 171 TELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMY 230
ELE+E E L +EL LLS E +E++ G GG E+ +A + +MY
Sbjct: 58 NELEIEKYEKELDQ----LYQELLFLLSPE-ASDKAIVEIRPGTGGEEAALFARDLFRMY 112
Query: 231 KSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKR 290
+A+R+G+ + + + ++ GI+ V G+ A+G K E GVHR+ R+ +SG R
Sbjct: 113 TRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGR 172
Query: 291 RHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGIT 350
HTS A VAV+P ++I DL+IE FR+ G GGQ+ N T+SAVRI H+PTGI
Sbjct: 173 IHTSTATVAVLPE--IEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIV 230
Query: 351 ATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLT-DISWGNQIRTYVLHP 409
+CQNERSQ+QNK +A+ +L++R+ QL+ ++ + ++ +S +IRTY P
Sbjct: 231 VSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNF-P 289
Query: 410 YRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDK 447
V D R NY +L+GDLD I + ++
Sbjct: 290 QNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIEN 327
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 68.1 bits (166), Expect = 1e-14
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 25/91 (27%)
Query: 311 VQINESDLRIERFRSGGAGGQHANTTDSAVRI-------------------------IHI 345
I L I RS G GGQ+ N +S + I+
Sbjct: 15 SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK 74
Query: 346 PTGITATCQNERSQHQNKASAMGVLQSRVNQ 376
+ T ++ R Q +N A + ++ + +
Sbjct: 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 26.7 bits (59), Expect = 3.8
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 133 RISREH-----GSLMGKMKE--------VKAFEQELLEHIDMIKLAREENDTELELESL- 178
+ H G L K K FEQ L+ ++M R E L+
Sbjct: 13 TDAAGHAGSISGGLDLVEKRLKEKSEEFTKHFEQFYLKAVEMTGYLRTELHHFPALKKFT 72
Query: 179 -EALLTMR--RKSKEKELDALLSGEL 201
+ L ++ + + LS E+
Sbjct: 73 KDVSLELKLFSHFLHEVEELELSNEV 98
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 316
Score = 26.5 bits (58), Expect = 7.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 212 AGAGGTESMDWASMVLQMYKSWAQRRGY 239
A ++ +A + YK+ R Y
Sbjct: 66 YDAPAVDAHYYAGVTYDYYKNVHNRLSY 93
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 26.3 bits (57), Expect = 8.0
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 112 LNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMK----EVKAFEQELLEHIDMI-KLAR 166
++ ++ L+ + + +EH + ++K V + E D+ + A+
Sbjct: 31 IDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAK 90
Query: 167 EENDTELELESLEALLTMRRKSKEKELDALLS 198
++ E +S L + L A +
Sbjct: 91 DKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKT 122
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 24.6 bits (54), Expect = 8.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 236 RRGYRVTLMDEMPGEIAGIKRATIKVDGE 264
RGY + + P E + R T+ +G
Sbjct: 25 ARGYNIESLSVAPTEDPTLSRMTLVTNGP 53
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 26.3 bits (57), Expect = 9.0
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 112 LNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMK----EVKAFEQELLEHIDMIKLARE 167
L+ L+DD + + R+H + KM+ +V L E I + +
Sbjct: 24 HQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKW 83
Query: 168 ENDTELELESLEALLTMRRKSKEKELDA 195
D ++ +S+ LT +S + L+
Sbjct: 84 ILDRKITADSVGLGLTSELRSWLESLEP 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.385
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,662,978
Number of extensions: 75286
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)