Query 012937
Match_columns 453
No_of_seqs 207 out of 1307
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3E-126 6E-131 971.0 40.6 436 2-440 74-512 (524)
2 PLN02814 beta-glucosidase 100.0 4E-119 9E-124 944.1 43.1 419 7-442 65-488 (504)
3 PLN02849 beta-glucosidase 100.0 7E-119 1E-123 942.4 42.9 416 7-439 67-485 (503)
4 PLN02998 beta-glucosidase 100.0 1E-118 3E-123 939.3 42.4 413 9-437 72-488 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 5E-117 1E-121 897.2 37.4 409 2-438 42-454 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 5E-116 1E-120 916.6 43.6 408 9-440 43-467 (467)
7 PRK13511 6-phospho-beta-galact 100.0 2E-115 4E-120 914.5 43.1 408 10-439 45-468 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 9E-115 2E-119 908.7 43.2 402 10-440 64-476 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 5E-116 1E-120 919.2 32.8 411 2-438 41-454 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 2E-114 4E-119 906.2 44.0 400 10-438 58-473 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-113 7E-118 895.8 44.0 399 10-438 60-474 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 5E-113 1E-117 893.3 44.0 402 10-440 62-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 6E-110 1E-114 863.9 39.2 391 2-430 37-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 2.2E-13 4.7E-18 132.8 24.3 250 40-429 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.3 2.8E-11 6.1E-16 118.4 11.0 109 20-133 22-134 (281)
16 PF02449 Glyco_hydro_42: Beta- 99.2 2.5E-11 5.4E-16 124.8 9.1 109 19-133 10-141 (374)
17 PF07745 Glyco_hydro_53: Glyco 99.1 1.2E-08 2.5E-13 102.6 23.6 250 22-395 27-297 (332)
18 PRK10150 beta-D-glucuronidase; 99.1 1.6E-08 3.5E-13 110.4 26.1 265 19-436 313-594 (604)
19 PF01229 Glyco_hydro_39: Glyco 99.0 2.3E-08 5E-13 106.4 20.2 291 21-433 41-359 (486)
20 PF00331 Glyco_hydro_10: Glyco 98.9 7.2E-07 1.6E-11 90.0 24.1 288 14-432 15-318 (320)
21 COG3693 XynA Beta-1,4-xylanase 98.9 8.8E-07 1.9E-11 87.0 23.0 270 40-437 67-344 (345)
22 COG1874 LacA Beta-galactosidas 98.3 1.6E-06 3.4E-11 94.2 8.5 119 20-144 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.3 8E-05 1.7E-09 74.2 19.0 93 17-130 34-132 (298)
24 COG2730 BglC Endoglucanase [Ca 98.2 7.9E-06 1.7E-10 85.1 10.1 119 14-132 63-193 (407)
25 COG3867 Arabinogalactan endo-1 97.8 0.0038 8.1E-08 61.0 20.6 255 22-394 66-342 (403)
26 PF01301 Glyco_hydro_35: Glyco 97.7 0.00022 4.9E-09 71.9 10.2 108 20-130 25-150 (319)
27 PF11790 Glyco_hydro_cc: Glyco 97.5 0.0061 1.3E-07 58.9 16.4 67 320-399 151-217 (239)
28 PLN03059 beta-galactosidase; P 97.2 0.0025 5.3E-08 71.0 11.0 106 20-129 60-186 (840)
29 PLN02161 beta-amylase 97.0 0.0041 8.9E-08 65.0 9.7 111 15-132 113-262 (531)
30 PF03198 Glyco_hydro_72: Gluca 96.9 0.076 1.6E-06 52.9 17.2 49 19-83 53-101 (314)
31 PLN02803 beta-amylase 96.8 0.005 1.1E-07 64.8 9.0 107 19-132 107-252 (548)
32 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.013 2.8E-07 59.9 11.7 100 29-132 57-185 (384)
33 PF01373 Glyco_hydro_14: Glyco 96.8 0.0019 4.1E-08 66.2 5.4 106 18-131 15-151 (402)
34 PLN00197 beta-amylase; Provisi 96.8 0.0058 1.3E-07 64.5 9.1 106 20-132 128-272 (573)
35 PLN02801 beta-amylase 96.7 0.0095 2E-07 62.4 9.9 98 19-121 37-173 (517)
36 PF13204 DUF4038: Protein of u 96.5 0.018 4E-07 57.2 10.6 104 22-130 33-156 (289)
37 PLN02905 beta-amylase 96.3 0.021 4.5E-07 61.2 9.9 101 15-120 282-421 (702)
38 PLN02705 beta-amylase 96.3 0.021 4.5E-07 61.0 9.8 99 17-120 266-403 (681)
39 PF14488 DUF4434: Domain of un 95.8 0.082 1.8E-06 48.2 10.0 103 20-131 21-131 (166)
40 KOG0496 Beta-galactosidase [Ca 94.9 0.14 3E-06 55.5 9.4 95 20-117 50-155 (649)
41 PRK09525 lacZ beta-D-galactosi 94.6 0.17 3.7E-06 58.9 10.3 94 17-131 369-464 (1027)
42 PRK10340 ebgA cryptic beta-D-g 93.4 0.37 7.9E-06 56.2 9.9 90 17-130 353-450 (1021)
43 COG3250 LacZ Beta-galactosidas 92.7 0.64 1.4E-05 52.6 10.2 90 15-131 317-408 (808)
44 COG3934 Endo-beta-mannanase [C 90.5 0.15 3.3E-06 53.2 2.1 109 21-132 28-150 (587)
45 COG3664 XynB Beta-xylosidase [ 87.8 0.77 1.7E-05 47.2 4.8 99 28-133 14-117 (428)
46 smart00642 Aamy Alpha-amylase 86.0 2.8 6E-05 38.2 7.1 66 15-82 15-91 (166)
47 PF07488 Glyco_hydro_67M: Glyc 85.8 5.9 0.00013 39.5 9.5 88 18-120 56-151 (328)
48 PF14871 GHL6: Hypothetical gl 83.0 8.6 0.00019 33.7 8.6 94 23-117 4-123 (132)
49 PF00332 Glyco_hydro_17: Glyco 78.4 3.8 8.1E-05 41.3 5.4 83 322-416 212-303 (310)
50 PLN02361 alpha-amylase 76.2 7 0.00015 40.8 6.8 67 16-82 26-97 (401)
51 PF02638 DUF187: Glycosyl hydr 72.9 19 0.00042 36.1 8.8 101 18-118 18-154 (311)
52 TIGR02402 trehalose_TreZ malto 70.6 22 0.00047 38.7 9.2 59 18-82 110-181 (542)
53 PLN00196 alpha-amylase; Provis 69.6 10 0.00022 39.9 6.2 65 17-81 42-112 (428)
54 cd07945 DRE_TIM_CMS Leptospira 69.5 14 0.0003 36.6 6.8 84 20-115 75-158 (280)
55 cd06593 GH31_xylosidase_YicI Y 68.2 34 0.00073 34.1 9.4 107 20-131 25-161 (308)
56 PF00128 Alpha-amylase: Alpha 67.5 13 0.00028 36.1 6.2 59 21-82 6-73 (316)
57 COG1501 Alpha-glucosidases, fa 66.8 17 0.00037 41.2 7.6 101 31-136 294-422 (772)
58 cd07939 DRE_TIM_NifV Streptomy 66.4 18 0.0004 35.1 6.9 80 21-115 71-150 (259)
59 PLN02746 hydroxymethylglutaryl 66.4 17 0.00038 37.1 6.9 85 21-115 123-208 (347)
60 cd06592 GH31_glucosidase_KIAA1 66.3 45 0.00099 33.2 9.9 106 21-131 32-167 (303)
61 PRK12313 glycogen branching en 66.0 32 0.00069 38.1 9.5 97 18-124 169-306 (633)
62 cd03174 DRE_TIM_metallolyase D 65.2 20 0.00044 34.4 7.0 80 22-114 77-156 (265)
63 cd06543 GH18_PF-ChiA-like PF-C 64.9 34 0.00073 34.2 8.5 85 26-119 19-105 (294)
64 cd06602 GH31_MGAM_SI_GAA This 64.7 41 0.00089 34.2 9.3 108 21-133 26-169 (339)
65 PRK05402 glycogen branching en 64.3 35 0.00076 38.5 9.5 97 18-124 264-401 (726)
66 PF12891 Glyco_hydro_44: Glyco 64.2 21 0.00046 34.5 6.6 113 61-197 24-179 (239)
67 PRK05692 hydroxymethylglutaryl 64.0 21 0.00045 35.5 6.9 87 20-116 80-167 (287)
68 COG5309 Exo-beta-1,3-glucanase 63.7 30 0.00065 34.0 7.5 53 12-82 56-108 (305)
69 cd06598 GH31_transferase_CtsZ 63.3 47 0.001 33.4 9.4 111 21-133 26-168 (317)
70 cd06601 GH31_lyase_GLase GLase 62.7 46 0.001 33.8 9.2 109 22-136 27-140 (332)
71 TIGR02090 LEU1_arch isopropylm 62.3 22 0.00049 36.5 7.0 61 21-82 73-133 (363)
72 cd06603 GH31_GANC_GANAB_alpha 62.0 45 0.00097 33.8 9.1 110 21-134 26-167 (339)
73 KOG2233 Alpha-N-acetylglucosam 61.9 39 0.00084 35.9 8.4 113 18-130 77-248 (666)
74 PLN02784 alpha-amylase 61.8 21 0.00045 40.7 7.0 66 16-81 518-588 (894)
75 COG1523 PulA Type II secretory 61.4 18 0.00039 40.4 6.4 56 25-82 206-286 (697)
76 cd06600 GH31_MGAM-like This fa 60.9 55 0.0012 32.9 9.4 108 21-133 26-164 (317)
77 PRK09441 cytoplasmic alpha-amy 60.4 16 0.00035 39.0 5.7 67 16-82 19-102 (479)
78 cd06591 GH31_xylosidase_XylS X 59.9 57 0.0012 32.8 9.3 111 21-134 26-164 (319)
79 cd07948 DRE_TIM_HCS Saccharomy 59.6 16 0.00034 35.9 5.0 61 21-82 73-133 (262)
80 TIGR02403 trehalose_treC alpha 58.8 17 0.00037 39.5 5.7 68 15-82 23-96 (543)
81 cd02803 OYE_like_FMN_family Ol 58.6 79 0.0017 31.6 10.1 89 43-143 61-171 (327)
82 PRK05799 coproporphyrinogen II 58.3 22 0.00047 36.5 6.1 96 21-133 98-195 (374)
83 PRK09058 coproporphyrinogen II 57.6 41 0.00089 35.6 8.1 107 21-144 162-270 (449)
84 PRK14706 glycogen branching en 56.6 65 0.0014 35.8 9.7 90 26-118 175-299 (639)
85 PLN02447 1,4-alpha-glucan-bran 56.5 26 0.00057 39.6 6.7 94 17-118 248-383 (758)
86 TIGR01515 branching_enzym alph 56.4 66 0.0014 35.6 9.8 101 20-124 157-292 (613)
87 PRK14041 oxaloacetate decarbox 56.1 44 0.00095 35.7 8.0 55 18-87 89-148 (467)
88 PRK14040 oxaloacetate decarbox 55.1 44 0.00096 36.8 8.0 51 18-83 91-146 (593)
89 PRK10933 trehalose-6-phosphate 54.7 19 0.00042 39.2 5.2 66 15-82 29-102 (551)
90 cd06599 GH31_glycosidase_Aec37 54.5 1E+02 0.0023 30.9 10.1 111 21-132 31-171 (317)
91 TIGR01210 conserved hypothetic 53.6 68 0.0015 32.2 8.6 110 22-145 117-229 (313)
92 PRK12581 oxaloacetate decarbox 53.1 48 0.001 35.3 7.7 55 18-87 99-158 (468)
93 PF10566 Glyco_hydro_97: Glyco 53.1 77 0.0017 31.3 8.6 99 15-116 28-149 (273)
94 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.5 85 0.0018 30.8 9.0 68 21-115 93-160 (275)
95 cd07944 DRE_TIM_HOA_like 4-hyd 52.3 60 0.0013 31.8 7.8 65 22-115 85-149 (266)
96 TIGR03234 OH-pyruv-isom hydrox 51.8 45 0.00097 31.9 6.8 68 17-87 82-150 (254)
97 PRK09505 malS alpha-amylase; R 51.7 30 0.00065 38.7 6.1 62 21-82 232-313 (683)
98 cd04733 OYE_like_2_FMN Old yel 51.4 2.4E+02 0.0052 28.5 12.3 39 43-83 63-104 (338)
99 cd07938 DRE_TIM_HMGL 3-hydroxy 50.7 50 0.0011 32.5 7.0 85 21-115 75-160 (274)
100 TIGR02660 nifV_homocitr homoci 50.2 45 0.00098 34.3 6.8 82 21-118 74-155 (365)
101 TIGR00433 bioB biotin syntheta 49.5 47 0.001 32.6 6.7 55 21-80 122-177 (296)
102 TIGR02456 treS_nterm trehalose 49.3 25 0.00054 38.2 5.0 65 18-82 27-97 (539)
103 PRK14511 maltooligosyl trehalo 48.9 33 0.0007 39.4 5.9 57 18-82 19-90 (879)
104 PRK14705 glycogen branching en 48.9 1.2E+02 0.0026 36.4 10.6 93 25-118 772-897 (1224)
105 PRK11858 aksA trans-homoaconit 48.7 54 0.0012 33.9 7.2 59 22-81 78-136 (378)
106 PRK07379 coproporphyrinogen II 48.6 79 0.0017 32.9 8.4 104 21-143 114-221 (400)
107 PRK04161 tagatose 1,6-diphosph 47.3 94 0.002 31.5 8.2 90 24-124 112-204 (329)
108 PRK12399 tagatose 1,6-diphosph 47.1 94 0.002 31.4 8.2 58 25-87 111-168 (324)
109 PRK03705 glycogen debranching 47.1 45 0.00098 37.2 6.6 57 25-82 185-263 (658)
110 PRK12331 oxaloacetate decarbox 46.9 85 0.0018 33.3 8.4 51 22-87 99-149 (448)
111 PF03659 Glyco_hydro_71: Glyco 46.8 88 0.0019 32.5 8.3 51 19-81 17-67 (386)
112 PRK12858 tagatose 1,6-diphosph 46.6 71 0.0015 32.6 7.5 52 25-81 112-163 (340)
113 PF02065 Melibiase: Melibiase; 46.4 1.8E+02 0.004 30.3 10.6 99 22-129 61-193 (394)
114 PRK10785 maltodextrin glucosid 45.5 39 0.00084 37.2 5.8 54 21-82 181-247 (598)
115 KOG1065 Maltase glucoamylase a 45.3 95 0.0021 35.2 8.6 106 22-135 314-454 (805)
116 COG2951 MltB Membrane-bound ly 44.7 22 0.00048 36.2 3.5 96 320-425 110-223 (343)
117 cd07941 DRE_TIM_LeuA3 Desulfob 44.5 71 0.0015 31.3 7.0 81 23-115 82-162 (273)
118 PF02055 Glyco_hydro_30: O-Gly 43.4 1.4E+02 0.0029 32.3 9.3 97 325-433 319-419 (496)
119 PF12876 Cellulase-like: Sugar 43.1 16 0.00035 29.2 1.8 19 113-131 1-22 (88)
120 TIGR03217 4OH_2_O_val_ald 4-hy 42.8 1.3E+02 0.0028 30.6 8.6 47 21-82 89-135 (333)
121 PRK12568 glycogen branching en 42.8 50 0.0011 37.2 6.1 95 18-118 268-401 (730)
122 TIGR03581 EF_0839 conserved hy 42.6 1.1E+02 0.0023 29.3 7.3 81 12-107 128-231 (236)
123 TIGR02401 trehalose_TreY malto 42.5 46 0.001 38.0 5.8 57 18-82 15-86 (825)
124 PTZ00445 p36-lilke protein; Pr 42.3 51 0.0011 31.4 5.2 50 61-114 29-88 (219)
125 COG3589 Uncharacterized conser 42.2 71 0.0015 32.4 6.5 71 23-109 20-90 (360)
126 cd07943 DRE_TIM_HOA 4-hydroxy- 41.5 1.3E+02 0.0027 29.3 8.2 46 22-82 88-133 (263)
127 PF13200 DUF4015: Putative gly 41.5 96 0.0021 31.3 7.4 97 19-116 13-136 (316)
128 cd06604 GH31_glucosidase_II_Ma 41.5 1.6E+02 0.0035 29.8 9.2 108 20-133 25-163 (339)
129 PLN02960 alpha-amylase 41.3 53 0.0011 37.7 6.0 97 16-118 413-549 (897)
130 TIGR00612 ispG_gcpE 1-hydroxy- 41.3 1.7E+02 0.0037 29.8 9.0 89 9-113 72-160 (346)
131 PF01055 Glyco_hydro_31: Glyco 40.5 1.5E+02 0.0032 31.1 9.1 109 20-133 44-184 (441)
132 cd07947 DRE_TIM_Re_CS Clostrid 40.4 1E+02 0.0022 30.6 7.3 60 21-81 76-135 (279)
133 cd02874 GH18_CFLE_spore_hydrol 40.3 79 0.0017 31.4 6.7 92 17-118 7-103 (313)
134 cd02932 OYE_YqiM_FMN Old yello 40.0 4E+02 0.0088 26.8 16.3 40 43-84 61-100 (336)
135 cd06542 GH18_EndoS-like Endo-b 40.0 94 0.002 29.8 7.0 55 60-118 50-104 (255)
136 PRK08195 4-hyroxy-2-oxovalerat 39.9 71 0.0015 32.5 6.3 68 22-119 91-158 (337)
137 cd07940 DRE_TIM_IPMS 2-isoprop 39.8 87 0.0019 30.5 6.8 79 22-115 72-154 (268)
138 TIGR01211 ELP3 histone acetylt 39.8 1.2E+02 0.0026 32.9 8.3 108 21-146 205-317 (522)
139 PRK12677 xylose isomerase; Pro 39.6 3E+02 0.0065 28.5 11.0 72 20-100 32-104 (384)
140 TIGR02631 xylA_Arthro xylose i 38.6 2.9E+02 0.0063 28.6 10.6 78 14-100 27-105 (382)
141 cd06545 GH18_3CO4_chitinase Th 37.4 88 0.0019 30.1 6.3 73 39-118 27-99 (253)
142 PF05089 NAGLU: Alpha-N-acetyl 37.4 80 0.0017 32.1 6.0 112 18-131 18-185 (333)
143 TIGR01108 oadA oxaloacetate de 36.5 1.5E+02 0.0032 32.7 8.5 51 22-87 94-144 (582)
144 TIGR01232 lacD tagatose 1,6-di 36.4 1.5E+02 0.0032 30.1 7.6 60 24-88 111-170 (325)
145 TIGR02100 glgX_debranch glycog 36.0 93 0.002 35.0 6.9 56 25-82 190-266 (688)
146 PF03511 Fanconi_A: Fanconi an 35.0 29 0.00062 26.2 1.8 37 43-83 19-55 (64)
147 PF04646 DUF604: Protein of un 34.7 20 0.00044 34.8 1.3 77 65-144 72-148 (255)
148 TIGR00539 hemN_rel putative ox 34.4 1E+02 0.0022 31.4 6.5 62 21-88 99-163 (360)
149 PRK14510 putative bifunctional 34.2 64 0.0014 38.7 5.6 58 23-82 191-268 (1221)
150 PRK08446 coproporphyrinogen II 33.9 1.2E+02 0.0027 30.7 7.0 92 22-131 98-192 (350)
151 COG0821 gcpE 1-hydroxy-2-methy 33.8 3E+02 0.0065 28.1 9.3 88 10-113 75-162 (361)
152 TIGR01212 radical SAM protein, 33.7 1.2E+02 0.0026 30.2 6.7 73 60-145 162-234 (302)
153 PRK14507 putative bifunctional 33.4 93 0.002 38.5 6.7 59 18-84 757-832 (1693)
154 PRK09997 hydroxypyruvate isome 33.4 1.6E+02 0.0034 28.3 7.4 65 20-87 86-151 (258)
155 PRK06294 coproporphyrinogen II 33.1 1.8E+02 0.0039 29.8 8.2 96 21-133 102-199 (370)
156 PRK10426 alpha-glucosidase; Pr 32.6 3.1E+02 0.0067 30.5 10.3 109 20-130 222-364 (635)
157 TIGR02104 pulA_typeI pullulana 32.0 1E+02 0.0022 34.0 6.4 23 60-82 228-250 (605)
158 TIGR02635 RhaI_grampos L-rhamn 31.8 2.7E+02 0.0058 28.9 9.0 92 11-120 33-131 (378)
159 TIGR03471 HpnJ hopanoid biosyn 31.7 1.3E+02 0.0029 31.8 7.1 61 22-88 287-349 (472)
160 PRK13398 3-deoxy-7-phosphohept 31.5 1.6E+02 0.0035 28.9 7.1 68 14-86 36-103 (266)
161 PF11997 DUF3492: Domain of un 31.4 56 0.0012 32.1 3.9 26 321-349 185-210 (268)
162 PRK10658 putative alpha-glucos 31.3 3E+02 0.0066 30.8 10.0 105 23-131 287-420 (665)
163 PLN02389 biotin synthase 30.2 1.5E+02 0.0033 30.7 6.9 58 20-82 176-234 (379)
164 COG0366 AmyA Glycosidases [Car 30.0 88 0.0019 32.9 5.4 59 23-83 33-101 (505)
165 PRK09856 fructoselysine 3-epim 29.9 76 0.0017 30.6 4.6 61 16-79 87-147 (275)
166 PF00682 HMGL-like: HMGL-like 29.1 1.4E+02 0.0029 28.3 6.0 80 22-116 66-149 (237)
167 PRK09936 hypothetical protein; 28.5 5E+02 0.011 26.0 9.8 61 21-91 40-100 (296)
168 PRK11572 copper homeostasis pr 28.5 1.4E+02 0.0031 29.1 5.9 42 18-70 72-113 (248)
169 KOG0470 1,4-alpha-glucan branc 28.4 85 0.0018 35.1 4.8 65 18-83 253-333 (757)
170 cd06594 GH31_glucosidase_YihQ 28.1 5.1E+02 0.011 25.9 10.3 110 20-131 24-168 (317)
171 TIGR02159 PA_CoA_Oxy4 phenylac 28.0 84 0.0018 28.0 4.0 55 12-77 35-90 (146)
172 PRK12359 flavodoxin FldB; Prov 27.2 1.8E+02 0.0038 26.6 6.1 66 366-435 95-166 (172)
173 PRK10340 ebgA cryptic beta-D-g 27.2 1.6E+02 0.0034 34.8 7.2 77 336-437 506-602 (1021)
174 PF00150 Cellulase: Cellulase 26.9 1.6E+02 0.0034 28.1 6.1 56 63-121 23-78 (281)
175 cd02742 GH20_hexosaminidase Be 26.4 1.9E+02 0.0042 28.7 6.8 64 21-90 18-98 (303)
176 PRK12755 phospho-2-dehydro-3-d 26.4 2.3E+02 0.005 29.1 7.2 65 14-78 63-142 (353)
177 TIGR01589 A_thal_3526 uncharac 26.3 67 0.0015 23.9 2.5 36 64-110 19-55 (57)
178 TIGR00419 tim triosephosphate 26.2 1.7E+02 0.0036 27.6 5.9 44 25-81 74-117 (205)
179 TIGR02058 lin0512_fam conserve 26.0 60 0.0013 27.8 2.6 31 338-381 2-32 (116)
180 cd06589 GH31 The enzymes of gl 26.0 2.5E+02 0.0055 27.2 7.5 91 21-133 26-120 (265)
181 TIGR00674 dapA dihydrodipicoli 25.9 3E+02 0.0064 27.0 8.0 60 52-125 13-72 (285)
182 PRK08599 coproporphyrinogen II 25.8 2.9E+02 0.0064 28.2 8.2 95 21-133 99-196 (377)
183 cd06565 GH20_GcnA-like Glycosy 25.3 2.7E+02 0.0059 27.7 7.6 63 21-90 19-86 (301)
184 PRK13523 NADPH dehydrogenase N 25.1 7.3E+02 0.016 25.1 12.4 82 53-143 73-172 (337)
185 PF04055 Radical_SAM: Radical 25.0 1.2E+02 0.0026 25.8 4.5 52 22-77 90-143 (166)
186 cd00019 AP2Ec AP endonuclease 24.9 4E+02 0.0086 25.7 8.6 54 19-79 10-64 (279)
187 TIGR00542 hxl6Piso_put hexulos 24.8 1.4E+02 0.0031 28.9 5.4 61 17-80 92-152 (279)
188 PTZ00445 p36-lilke protein; Pr 24.8 1.5E+02 0.0033 28.3 5.2 56 25-82 35-99 (219)
189 PF09585 Lin0512_fam: Conserve 24.8 67 0.0015 27.4 2.6 31 338-381 2-32 (113)
190 PF09713 A_thal_3526: Plant pr 24.8 52 0.0011 24.2 1.7 35 64-109 16-51 (54)
191 cd06525 GH25_Lyc-like Lyc mura 24.7 4.5E+02 0.0098 23.8 8.5 51 23-87 12-62 (184)
192 PRK05628 coproporphyrinogen II 24.4 3.5E+02 0.0075 27.7 8.4 97 20-134 106-205 (375)
193 PLN03153 hypothetical protein; 24.1 71 0.0015 34.4 3.2 70 68-146 325-401 (537)
194 PF13812 PPR_3: Pentatricopept 24.1 45 0.00097 20.6 1.2 15 63-77 20-34 (34)
195 PRK13210 putative L-xylulose 5 24.0 6.3E+02 0.014 24.1 9.9 54 20-79 17-70 (284)
196 PRK13209 L-xylulose 5-phosphat 23.9 6.5E+02 0.014 24.2 10.0 53 20-78 22-74 (283)
197 COG2100 Predicted Fe-S oxidore 23.9 2.5E+02 0.0055 28.6 6.8 84 17-114 199-284 (414)
198 PF01261 AP_endonuc_2: Xylose 23.9 68 0.0015 29.0 2.8 61 18-79 70-130 (213)
199 cd06595 GH31_xylosidase_XylS-l 23.9 2.5E+02 0.0053 27.8 7.0 112 21-133 27-163 (292)
200 PRK08208 coproporphyrinogen II 23.7 2.9E+02 0.0063 29.0 7.8 62 21-88 140-204 (430)
201 PRK07094 biotin synthase; Prov 23.4 1.3E+02 0.0027 30.1 4.9 57 20-81 127-185 (323)
202 COG5016 Pyruvate/oxaloacetate 22.9 3.6E+02 0.0077 28.4 7.8 72 17-115 91-167 (472)
203 TIGR02102 pullulan_Gpos pullul 22.8 2E+02 0.0043 34.3 6.8 64 17-82 478-576 (1111)
204 PRK08207 coproporphyrinogen II 22.8 3.5E+02 0.0075 29.1 8.2 87 22-126 269-358 (488)
205 PRK09282 pyruvate carboxylase 22.5 3.5E+02 0.0076 29.9 8.3 48 21-83 98-145 (592)
206 cd00950 DHDPS Dihydrodipicolin 22.3 3.5E+02 0.0076 26.3 7.7 57 52-122 15-71 (284)
207 PRK05692 hydroxymethylglutaryl 22.2 7.7E+02 0.017 24.3 11.5 95 18-133 119-213 (287)
208 cd01335 Radical_SAM Radical SA 21.7 1.2E+02 0.0026 26.6 4.0 60 21-82 87-146 (204)
209 PRK00230 orotidine 5'-phosphat 21.4 1.1E+02 0.0023 29.3 3.7 62 13-89 7-68 (230)
210 smart00729 Elp3 Elongator prot 21.0 1.9E+02 0.0042 25.7 5.3 59 19-81 97-157 (216)
211 PF08097 Toxin_26: Conotoxin T 20.9 36 0.00078 16.4 0.2 9 384-392 3-11 (11)
212 TIGR00538 hemN oxygen-independ 20.7 86 0.0019 33.2 3.2 77 21-115 150-229 (455)
213 PRK01060 endonuclease IV; Prov 20.7 4.9E+02 0.011 25.0 8.3 51 20-77 13-63 (281)
214 PLN02808 alpha-galactosidase 20.6 2.5E+02 0.0054 29.3 6.4 61 16-87 130-190 (386)
215 PRK13347 coproporphyrinogen II 20.6 2.1E+02 0.0045 30.3 6.0 77 21-115 151-230 (453)
216 TIGR00542 hxl6Piso_put hexulos 20.5 2.2E+02 0.0047 27.6 5.8 54 19-78 16-69 (279)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-126 Score=970.96 Aligned_cols=436 Identities=56% Similarity=1.061 Sum_probs=401.8
Q ss_pred CccccCCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
||++.+++++|+|||+||||+|||+|||+||+++||||||||||+|.|...+.+|++||+||+++|++|+++||+|+|||
T Consensus 74 p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 74 PGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred CcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56778899999999999999999999999999999999999999999954478999999999999999999999999999
Q ss_pred ccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCC
Q 012937 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (453)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~ 161 (453)
+|||+|++|+++||||+|+++++.|.+||+.||++|||+||+|+|||||++++..||..|..|||+|+.+.+.|..|++.
T Consensus 154 fHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~ 233 (524)
T KOG0626|consen 154 FHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSG 233 (524)
T ss_pred ecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHH
Q 012937 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (453)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 241 (453)
++.|.|+||||+|||+||++||+.++..|+|+|||+++..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|+
T Consensus 234 ~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk 313 (524)
T KOG0626|consen 234 TEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMK 313 (524)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999988999999999
Q ss_pred HHHhccCCCCCHHHHHHhcCCcceeEeeccccceeeecccC-CCCCCCccCCCccccccccCC-CCCCCCCCCCCcccCh
Q 012937 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSF-SNTNFSYTTDSRVNRTKEKNG-FPLGQPTGSDWLSIYP 319 (453)
Q Consensus 242 ~~l~~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~~t~~gw~~i~P 319 (453)
+.+++|||.||++|.+++||+.||+||||||+.++++...+ ....+.+..|..+.. ...+ .+.+..+...|+.++|
T Consensus 314 ~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P 391 (524)
T KOG0626|consen 314 ERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYP 391 (524)
T ss_pred HHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceee--eecccccccccccccceeecc
Confidence 99999999999999999999999999999999999886532 222233444444333 1222 3456667788999999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHH-cCCCCeEEEEeccCcccc
Q 012937 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLDNY 398 (453)
Q Consensus 320 ~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-d~Gv~V~GY~~WSl~Dn~ 398 (453)
+||+++|++++++|++|||||||||+++.+....+....++|..||+|++.||++|++||. + ||||+|||+|||||||
T Consensus 392 ~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~d-gvnv~GYf~WSLmDnf 470 (524)
T KOG0626|consen 392 WGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKED-GVNVKGYFVWSLLDNF 470 (524)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhc-CCceeeEEEeEcccch
Confidence 9999999999999999999999999999865433445678999999999999999999996 7 9999999999999999
Q ss_pred cccCCCcceeeeEEEeCCCCcccccccHHHHHHHHHHcCCCC
Q 012937 399 EWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTDV 440 (453)
Q Consensus 399 EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~~ 440 (453)
||..||+.||||++|||+|.++|+||.|+.||+++|+.+..+
T Consensus 471 Ew~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 471 EWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred hhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcCCCCC
Confidence 999999999999999999779999999999999999988775
No 2
>PLN02814 beta-glucosidase
Probab=100.00 E-value=4.1e-119 Score=944.15 Aligned_cols=419 Identities=43% Similarity=0.806 Sum_probs=372.2
Q ss_pred CCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC
Q 012937 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (453)
Q Consensus 7 ~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 86 (453)
++.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|||||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 3568899999999999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCC-CCCCCCCCCCChhH
Q 012937 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNY-IGNCPAGNSATEPY 165 (453)
Q Consensus 87 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~-~~~~~~~~~~~~~~ 165 (453)
|+||++++|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.. ||.++.. ...|..+++.++.+
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHH
Confidence 999999889999999999999999999999999999999999999999999999985 8865421 01343344446789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHh
Q 012937 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG 245 (453)
Q Consensus 166 ~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~ 245 (453)
+|+||+++|||+||+++|+.++..|+++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.++
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~ 301 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLG 301 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHh
Confidence 99999999999999999998655689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHhcCCcceeEeeccccceeeecccCC---CCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHH
Q 012937 246 NRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFS---NTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGI 322 (453)
Q Consensus 246 ~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl 322 (453)
+++|.||++|+++|++++||+|||||++.+|+..+... .....+..+... ...+..+.+++|| +|+|+||
T Consensus 302 ~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl 374 (504)
T PLN02814 302 SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGL 374 (504)
T ss_pred cCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHH
Confidence 99999999999999999999999999999997532110 000001000000 0112345788999 8999999
Q ss_pred HHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccC
Q 012937 323 RELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEY 402 (453)
Q Consensus 323 ~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~ 402 (453)
+.+|++++++|++|||||||||++..+ ++.++|++||+||++||++|++||+| ||||+||++|||||||||.+
T Consensus 375 ~~~L~~~~~rY~~ppI~ITENG~~~~~------~g~i~D~~Ri~Yl~~hl~~l~~Ai~d-Gv~V~GY~~WSllDnfEW~~ 447 (504)
T PLN02814 375 EGILEHIKQSYNNPPIYILENGMPMKH------DSTLQDTPRVEFIQAYIGAVLNAIKN-GSDTRGYFVWSMIDLYELLG 447 (504)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCC------CCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhc
Confidence 999999999999988999999999764 46789999999999999999999999 99999999999999999999
Q ss_pred CCcceeeeEEEeCCC-CcccccccHHHHHHHHHHcCCCCCC
Q 012937 403 GYTSRFGIIYVDYKD-GLRRSLKNSALWFKKFLRNQTDVAS 442 (453)
Q Consensus 403 Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~~~~~~~ 442 (453)
||++|||||||||++ +++|+||+|++||+++|++...+++
T Consensus 448 Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~~ 488 (504)
T PLN02814 448 GYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVAS 488 (504)
T ss_pred cccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCChhc
Confidence 999999999999985 4699999999999999999988874
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=6.6e-119 Score=942.40 Aligned_cols=416 Identities=42% Similarity=0.834 Sum_probs=370.6
Q ss_pred CCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC
Q 012937 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (453)
Q Consensus 7 ~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 86 (453)
++.++++||||||||+|||+|||+||+++|||||+||||+|+| .|++|++||+||+++|++|+++||+|||||+|||+
T Consensus 67 ~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 67 NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 3468899999999999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHH
Q 012937 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYV 166 (453)
Q Consensus 87 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 166 (453)
|+||++++|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|..+++.++.++
T Consensus 145 P~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 224 (503)
T PLN02849 145 PQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYI 224 (503)
T ss_pred cHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999964311012443444457899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhc
Q 012937 167 AAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN 246 (453)
Q Consensus 167 ~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~ 246 (453)
|+||+++|||+||+++|++++..|+++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.+++
T Consensus 225 a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~ 304 (503)
T PLN02849 225 VGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGS 304 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhc
Confidence 99999999999999999975444789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCHHHHHHhcCCcceeEeeccccceeeecccCCC--CCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHH
Q 012937 247 RLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSN--TNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRE 324 (453)
Q Consensus 247 ~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~ 324 (453)
++|.|+++|+++|++++||+|||||++.+|+....... ..+.+.. ..+.+....+++|| +|+|+||+.
T Consensus 305 ~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~ 374 (503)
T PLN02849 305 RLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMES 374 (503)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHH
Confidence 99999999999999999999999999999975321100 0000000 01112234578999 899999999
Q ss_pred HHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCC
Q 012937 325 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGY 404 (453)
Q Consensus 325 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy 404 (453)
+|++++++|++|||||||||++..++ .++.++|++||+||++||++|++||+| ||||+||++|||||||||.+||
T Consensus 375 ~L~~~~~rY~~pPi~ITENG~~~~d~----~~~~v~D~~Ri~Yl~~hL~~l~~Ai~d-Gv~V~GY~~WSl~DnfEW~~Gy 449 (503)
T PLN02849 375 VLEYIKQSYGNPPVYILENGTPMKQD----LQLQQKDTPRIEYLHAYIGAVLKAVRN-GSDTRGYFVWSFMDLYELLKGY 449 (503)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCccCC----CCCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhccc
Confidence 99999999999889999999998763 356899999999999999999999999 9999999999999999999999
Q ss_pred cceeeeEEEeCCC-CcccccccHHHHHHHHHHcCCC
Q 012937 405 TSRFGIIYVDYKD-GLRRSLKNSALWFKKFLRNQTD 439 (453)
Q Consensus 405 ~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~~~~ 439 (453)
++|||||+||+++ +++|+||+|++||+++|+++..
T Consensus 450 ~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~~ 485 (503)
T PLN02849 450 EFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNST 485 (503)
T ss_pred cCccceEEECCCCCCcceecccHHHHHHHHHHhCCC
Confidence 9999999999985 4699999999999999998863
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.2e-118 Score=939.29 Aligned_cols=413 Identities=46% Similarity=0.875 Sum_probs=366.8
Q ss_pred CCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCch
Q 012937 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (453)
Q Consensus 9 ~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 88 (453)
.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|||||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 58899999999999999999999999999999999999998 5889999999999999999999999999999999999
Q ss_pred hhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCC-CCCCCCCCChhHHH
Q 012937 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIG-NCPAGNSATEPYVA 167 (453)
Q Consensus 89 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~ 167 (453)
||++++|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+....+ .|..+++.++.++|
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999996431100 25555555678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhcc
Q 012937 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (453)
Q Consensus 168 ~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~ 247 (453)
+||+++|||+||+++|+.++..++++||++++..+++|.+++++|++||++++++.++||+||+++|+||+.|++.++++
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 309 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSR 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcC
Confidence 99999999999999999865558899999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCHHHHHHhcCCcceeEeeccccceeeecccC-CCCCCCccCCCccccccccCCCCCCCCC-CCCCcccChHHHHHH
Q 012937 248 LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSF-SNTNFSYTTDSRVNRTKEKNGFPLGQPT-GSDWLSIYPKGIREL 325 (453)
Q Consensus 248 lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~t-~~gw~~i~P~gl~~~ 325 (453)
+|.||++|+++|++++||+|||||++.+|+....+ .+....+..+.... . .+.++.+ .++| +|+|+||+.+
T Consensus 310 lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~w-~i~P~Gl~~~ 382 (497)
T PLN02998 310 LPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVE----M--TLVGNTSIENEY-ANTPWSLQQI 382 (497)
T ss_pred CCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccc----c--ccCCCcCCCCCC-EEChHHHHHH
Confidence 99999999999999999999999999999753211 00001111110000 0 0112233 3788 8999999999
Q ss_pred HHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCCc
Q 012937 326 LLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYT 405 (453)
Q Consensus 326 L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy~ 405 (453)
|++++++|++|||||||||+++.+ ++.++|++||+||++||.+|++||+| ||||+|||+|||||||||.+||+
T Consensus 383 L~~~~~rY~~ppI~ITENG~~~~~------~g~v~D~~Ri~Yl~~hl~~~~kAi~d-Gv~V~GY~~WSl~DnfEW~~Gy~ 455 (497)
T PLN02998 383 LLYVKETYGNPPVYILENGQMTPH------SSSLVDTTRVKYLSSYIKAVLHSLRK-GSDVKGYFQWSLMDVFELFGGYE 455 (497)
T ss_pred HHHHHHHcCCCCEEEeCCCCccCC------CCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhcccc
Confidence 999999999988999999998754 36789999999999999999999999 99999999999999999999999
Q ss_pred ceeeeEEEeCCC-CcccccccHHHHHHHHHHcC
Q 012937 406 SRFGIIYVDYKD-GLRRSLKNSALWFKKFLRNQ 437 (453)
Q Consensus 406 ~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~~ 437 (453)
+|||||+|||++ +++|+||+|++||+++|+++
T Consensus 456 ~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 456 RSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred CccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 999999999985 57999999999999999987
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-117 Score=897.23 Aligned_cols=409 Identities=38% Similarity=0.728 Sum_probs=368.1
Q ss_pred CccccCCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
|+++..+.++++||||||||+|||+|||+||+++|||||+||||+|++. .+++|++||+||+++||+|+++||+|+|||
T Consensus 42 ~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL 120 (460)
T COG2723 42 PGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTL 120 (460)
T ss_pred CCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 6777788999999999999999999999999999999999999999984 238999999999999999999999999999
Q ss_pred ccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCC
Q 012937 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (453)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~ 161 (453)
+|||+|+||++++|||.|+++++.|++||++||++|||+|++|+||||||+++..||+.|.+||+..+ .
T Consensus 121 ~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~ 189 (460)
T COG2723 121 YHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVD-----------P 189 (460)
T ss_pred cccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccC-----------H
Confidence 99999999999989999999999999999999999999999999999999999999999999999765 3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHH
Q 012937 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (453)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 241 (453)
+.++||+||+++|||+|++++|+.. ++.+||++++..+.||.+++|+|+.||+.++++.+++|+||+++|.||..+.
T Consensus 190 ~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~ 266 (460)
T COG2723 190 KAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLE 266 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHH
Confidence 7899999999999999999999975 4449999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc--CCCCCHHHHHHhcC-CcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccC
Q 012937 242 HLVGNR--LPKFTKSQAEMVKG-SVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIY 318 (453)
Q Consensus 242 ~~l~~~--lp~ft~~e~~~ik~-~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~ 318 (453)
+.++.. +|.++++|+++|+. ++||||+|||++..|........ ..+..... .....+|..+.++||| +|+
T Consensus 267 ~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~--~~~~~~~~----~~~~~~p~~~~sdwGW-eI~ 339 (460)
T COG2723 267 KELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYV--SGYGPGGF----FTSVPNPGLEVSDWGW-EIY 339 (460)
T ss_pred HHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcC--Cccccccc----ccccCCCCCcccCCCc-eeC
Confidence 988754 79999999999987 69999999999555543322110 11111110 1112246667889999 899
Q ss_pred hHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccc
Q 012937 319 PKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNY 398 (453)
Q Consensus 319 P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~ 398 (453)
|+||+.+|+++++||+ +||||||||++..++. .. +.|+|++||+||++||.+|++||+| ||+|+||++||+|||+
T Consensus 340 P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~--~~-~~i~DdyRI~Yl~~Hl~~v~~AI~d-Gv~v~GY~~Ws~iD~~ 414 (460)
T COG2723 340 PKGLYDILEKLYERYG-IPLFITENGLGVKDEV--DF-DGINDDYRIDYLKEHLKAVKKAIED-GVDVRGYFAWSLIDNY 414 (460)
T ss_pred hHHHHHHHHHHHHHhC-CCeEEecCCCCccccc--cc-CCcCchHHHHHHHHHHHHHHHHHHc-CCCcccceeccccccc
Confidence 9999999999999999 5699999999998863 22 3399999999999999999999999 9999999999999999
Q ss_pred cccCCCcceeeeEEEeCCCC-cccccccHHHHHHHHHHcCC
Q 012937 399 EWEYGYTSRFGIIYVDYKDG-LRRSLKNSALWFKKFLRNQT 438 (453)
Q Consensus 399 EW~~Gy~~rfGL~~VD~~~~-~~R~pK~S~~~y~~ii~~~~ 438 (453)
||.+||++|||||+||++ | ++|+||+|++|||+||++|.
T Consensus 415 sw~~gy~kRYGli~VD~~-~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 415 SWANGYKKRYGLVYVDYD-TDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred chhhccccccccEEEccc-ccceeeecCceeeeHHHHhcCC
Confidence 999999999999999998 7 79999999999999999998
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=5e-116 Score=916.61 Aligned_cols=408 Identities=33% Similarity=0.619 Sum_probs=358.4
Q ss_pred CCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCch
Q 012937 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (453)
Q Consensus 9 ~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 88 (453)
.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||++||++|+++||+|||||+|||+|+
T Consensus 43 ~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 43 YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 37799999999999999999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred hhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHH
Q 012937 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAA 168 (453)
Q Consensus 89 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 168 (453)
||+++ |||+|+++++.|++||+.||++||+ |++|+|||||++++..||+.|.+|||.+. ..++.++++
T Consensus 121 ~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~----------~~~~~~~a~ 188 (467)
T TIGR01233 121 ALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKY----------DLAKVFQSH 188 (467)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccc----------hhHHHHHHH
Confidence 99987 9999999999999999999999998 99999999999999999999999999642 124689999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCC-CCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhcc
Q 012937 169 HHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (453)
Q Consensus 169 h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~ 247 (453)
||+++|||+||+++|++. ++++|||+++..++||.+ ++++|++||++++++.++||+||+++|+||+.|++.++.+
T Consensus 189 hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~ 265 (467)
T TIGR01233 189 HNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHI 265 (467)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhh
Confidence 999999999999999963 789999999999999998 7999999999999999999999999999999999877632
Q ss_pred ------CCCCCHHHHHHh---cCCcceeEeeccccceeeecccCCC----CCCCccCCC-ccccccccCCCC-CCCCCCC
Q 012937 248 ------LPKFTKSQAEMV---KGSVDFLGLNYYTADYAEEVTSFSN----TNFSYTTDS-RVNRTKEKNGFP-LGQPTGS 312 (453)
Q Consensus 248 ------lp~ft~~e~~~i---k~~~DFiGlNyYt~~~v~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~p-~~~~t~~ 312 (453)
+|.||++|+++| ++++||||||||++.+|+....... ......... ...... ....+ ..+.++|
T Consensus 266 ~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~ 344 (467)
T TIGR01233 266 LAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVG-RRVAPDYVPRTDW 344 (467)
T ss_pred hhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcc-cccCCCCCCcCCC
Confidence 377999999999 4899999999999999975311100 000000000 000000 00012 2256889
Q ss_pred CCcccChHHHHHHHHHHHHHcCC-CCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEe
Q 012937 313 DWLSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFA 391 (453)
Q Consensus 313 gw~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~ 391 (453)
|| +|+|+||+.+|++++++|++ |||||||||++..++. .++.++|++||+||++||++|++||+| ||||+||++
T Consensus 345 gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~---~~g~i~D~~Ri~Yl~~hl~~~~~Ai~d-Gv~v~GY~~ 419 (467)
T TIGR01233 345 DW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEF---VDNTVYDDGRIDYVKQHLEVLSDAIAD-GANVKGYFI 419 (467)
T ss_pred CC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCC---CCCccCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEee
Confidence 99 79999999999999999987 6799999999987642 257899999999999999999999999 999999999
Q ss_pred ccCcccccccCCCcceeeeEEEeCCCCcccccccHHHHHHHHHHcCCCC
Q 012937 392 WSFLDNYEWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTDV 440 (453)
Q Consensus 392 WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~~ 440 (453)
|||||||||.+||++|||||+||++ |++|+||+|++||+++|++++++
T Consensus 420 WSl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 420 WSLMDVFSWSNGYEKRYGLFYVDFD-TQERYPKKSAHWYKKLAETQVIE 467 (467)
T ss_pred ccchhhhchhccccCccceEEECCC-CCccccccHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998 89999999999999999998864
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.8e-115 Score=914.47 Aligned_cols=408 Identities=34% Similarity=0.634 Sum_probs=357.3
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 122 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDG--YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEA 122 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHH
Confidence 7899999999999999999999999999999999999998 48999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h 169 (453)
|+++ |||+|+++++.|++||+.||++||| |++|+|||||++++..||..|.+|||++.. .+..++++|
T Consensus 123 L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~h 190 (469)
T PRK13511 123 LHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 190 (469)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHH
Confidence 9987 9999999999999999999999999 999999999999999999999999997531 246899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCC-CCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhc--
Q 012937 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN-- 246 (453)
Q Consensus 170 ~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-- 246 (453)
|+++|||+||++||+.. ++++||++++..+++|.+ ++++|++||++++++.++||+||+++|+||+.|++.++.
T Consensus 191 n~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~ 267 (469)
T PRK13511 191 NMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHIL 267 (469)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhh
Confidence 99999999999999964 789999999999999999 899999999999999999999999999999999987741
Q ss_pred ----cCCCCCHHHHHHhcC---CcceeEeeccccceeeecccCCC---CCCCccCCCc--cccccccCCCCCCCCCCCCC
Q 012937 247 ----RLPKFTKSQAEMVKG---SVDFLGLNYYTADYAEEVTSFSN---TNFSYTTDSR--VNRTKEKNGFPLGQPTGSDW 314 (453)
Q Consensus 247 ----~lp~ft~~e~~~ik~---~~DFiGlNyYt~~~v~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~p~~~~t~~gw 314 (453)
..|.||++|+++|++ ++||+|||||++.+|+....... .......... ..........+..+.+++||
T Consensus 268 ~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 347 (469)
T PRK13511 268 EANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW 347 (469)
T ss_pred hhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC
Confidence 124799999999964 68999999999999975321100 0000000000 00000001122335678999
Q ss_pred cccChHHHHHHHHHHHHHcCC-CCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEecc
Q 012937 315 LSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWS 393 (453)
Q Consensus 315 ~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WS 393 (453)
+|+|+||+.+|++++++|++ |||||||||++..++ .+.++.++|++||+||++||++|++||++ ||||+||++||
T Consensus 348 -~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~d-Gv~v~GY~~WS 423 (469)
T PRK13511 348 -IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAISD-GANVKGYFIWS 423 (469)
T ss_pred -eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeecc
Confidence 79999999999999999987 679999999998764 23456899999999999999999999999 99999999999
Q ss_pred CcccccccCCCcceeeeEEEeCCCCcccccccHHHHHHHHHHcCCC
Q 012937 394 FLDNYEWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTD 439 (453)
Q Consensus 394 l~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~ 439 (453)
|||||||.+||++|||||+|||+ |++|+||+|++||+++|+++..
T Consensus 424 l~DnfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S~~wy~~~i~~~~~ 468 (469)
T PRK13511 424 LMDVFSWSNGYEKRYGLFYVDFE-TQERYPKKSAYWYKKLAETKVI 468 (469)
T ss_pred cccccchhcCccCccceEEECCC-cCccccccHHHHHHHHHHhCCC
Confidence 99999999999999999999998 8999999999999999999764
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=9.2e-115 Score=908.65 Aligned_cols=402 Identities=28% Similarity=0.495 Sum_probs=355.7
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 68999999999999999999999999999999999999974 35799999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcc-cCc-CCCCCCCCCCCCCCCCCCCChhHHH
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (453)
|++++|||+|+++++.|++||+.||++|||+|++|+|||||++++..||. .|. +|||... ..+.++|
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99888999999999999999999999999999999999999999988886 454 4776422 2468999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhc-
Q 012937 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN- 246 (453)
Q Consensus 168 ~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~- 246 (453)
+||+++|||+||++||+.. |+++||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.+++
T Consensus 212 ~h~~llAHa~A~~~~~~~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 212 AHHELVASAIATKIAHEVD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 9999999999999999863 7899999999999999999999999999987 5578999999999999999999975
Q ss_pred -cCCCCCHHHHHHhc-CCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHH
Q 012937 247 -RLPKFTKSQAEMVK-GSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRE 324 (453)
Q Consensus 247 -~lp~ft~~e~~~ik-~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~ 324 (453)
.+|.||++|+++|+ +++||||||||++.+|+..+.... ... .... . ....|..+.+++|| +|+|+||+.
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~---~~~-~~~~---~-~~~~p~~~~~~~gw-~i~P~Gl~~ 358 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNE---KTA-GNIF---A-SLKNPYLKASEWGW-QIDPLGLRI 358 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCC---CCC-CCcc---c-cccCCCcccCCCCC-EECHHHHHH
Confidence 46889999999996 899999999999999975321100 000 0000 0 00124556788999 899999999
Q ss_pred HHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHH-cCCCCeEEEEeccCcccccccCC
Q 012937 325 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLDNYEWEYG 403 (453)
Q Consensus 325 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-d~Gv~V~GY~~WSl~Dn~EW~~G 403 (453)
+|++++++|++| |||||||++..++ .+.+|.++|++||+||++||++|++||+ | ||||+||++|||||||||.+|
T Consensus 359 ~l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~d-Gv~v~GY~~WSl~Dn~EW~~G 434 (478)
T PRK09593 359 TLNTIWDRYQKP-MFIVENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINED-GVELLGYTTWGCIDLVSAGTG 434 (478)
T ss_pred HHHHHHHHcCCC-EEEEcCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchHhhcccCC
Confidence 999999999875 9999999998764 2356789999999999999999999995 9 999999999999999999999
Q ss_pred -CcceeeeEEEeCCC----CcccccccHHHHHHHHHHcCCCC
Q 012937 404 -YTSRFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQTDV 440 (453)
Q Consensus 404 -y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~~~ 440 (453)
|++|||||+|||++ |++|+||+|++||+++|+++..+
T Consensus 435 ~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~~~~~ 476 (478)
T PRK09593 435 EMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIASNGED 476 (478)
T ss_pred CccCeeceEEECCCCCCCcccceecccHHHHHHHHHHhCCcC
Confidence 99999999999985 47999999999999999987664
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=4.5e-116 Score=919.24 Aligned_cols=411 Identities=49% Similarity=0.900 Sum_probs=358.5
Q ss_pred CccccCCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
++++.+++++++||||||||+|||+|||+||+++|||||+|+||+|+|. .|++|+++|++|+++|++|+++||+|||||
T Consensus 41 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 41 PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 5778899999999999999999999999999999999999999999973 499999999999999999999999999999
Q ss_pred ccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCC
Q 012937 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (453)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~ 161 (453)
+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||+.|.+|||..+ .
T Consensus 120 ~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~ 187 (455)
T PF00232_consen 120 YHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDS-----------L 187 (455)
T ss_dssp ESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSST-----------H
T ss_pred eecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccc-----------c
Confidence 99999999998 69999999999999999999999999999999999999999999999999999654 4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHH-HHHHHHHHHhhcccccceecCCCCHhH
Q 012937 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASE-KAAYRAIDFKFGWIFNPITYGSYPRSM 240 (453)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~-~aa~~~~~~~~~~f~d~~~~G~yP~~~ 240 (453)
.+.++|+||+++||++||+++|++. ++++||++++..+++|.+++++|. +||++.+++.++||+||+++|+||..|
T Consensus 188 ~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~ 264 (455)
T PF00232_consen 188 KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEM 264 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHH
T ss_pred chhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHH
Confidence 7889999999999999999999986 899999999999999999988776 899999999999999999999999999
Q ss_pred HHHHhcc--CCCCCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccC
Q 012937 241 QHLVGNR--LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIY 318 (453)
Q Consensus 241 ~~~l~~~--lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~ 318 (453)
++.++++ +|.||++|++.|++++||+|||||++.+|+..+..... +..... .... ...++.++.+++|| +++
T Consensus 265 ~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~t~~gw-~i~ 338 (455)
T PF00232_consen 265 KEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSP-PSYDSD--APFG--QPYNPGGPTTDWGW-EIY 338 (455)
T ss_dssp HHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSS-TTHEEE--ESEE--EECETSSEBCTTST-BBE
T ss_pred hhccccccccccccchhhhcccccchhhhhccccceeeccCcccccc-ccccCC--cccc--ccccccccccccCc-ccc
Confidence 9999987 99999999999999999999999999999987532211 111000 0000 00124556799999 799
Q ss_pred hHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccc
Q 012937 319 PKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNY 398 (453)
Q Consensus 319 P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~ 398 (453)
|+||+++|++++++|++|||+|||||+++.++. .++.++|+.||+||++||.+|++||+| ||||+||++|||||||
T Consensus 339 P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~---~~~~v~D~~Ri~yl~~hl~~v~~Ai~d-Gv~V~GY~~WSl~Dn~ 414 (455)
T PF00232_consen 339 PEGLRDVLRYLKDRYGNPPIYITENGIGDPDEV---DDGKVDDDYRIDYLQDHLNQVLKAIED-GVNVRGYFAWSLLDNF 414 (455)
T ss_dssp THHHHHHHHHHHHHHTSSEEEEEEE---EETTC---TTSHBSHHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEETSB---
T ss_pred cchHhhhhhhhccccCCCcEEEecccccccccc---cccCcCcHHHHHHHHHHHHHHHhhhcc-CCCeeeEeeecccccc
Confidence 999999999999999988999999999998763 238899999999999999999999999 9999999999999999
Q ss_pred cccCCCcceeeeEEEeCCCCcccccccHHHHHHHHHHcCC
Q 012937 399 EWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQT 438 (453)
Q Consensus 399 EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~ 438 (453)
||.+||++|||||+|||.+|++|+||+|++||+++|++|.
T Consensus 415 Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng 454 (455)
T PF00232_consen 415 EWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNG 454 (455)
T ss_dssp BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTE
T ss_pred ccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcC
Confidence 9999999999999999544999999999999999999985
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-114 Score=906.22 Aligned_cols=400 Identities=30% Similarity=0.550 Sum_probs=350.4
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|||||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 68999999999999999999999999999999999999984 25699999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhccc-----Ccc-cCc-CCCCCCCCCCCCCCCCCCCC
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC-----GYA-KGT-KAPGRCSNYIGNCPAGNSAT 162 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~ 162 (453)
|++++|||+|+++++.|++||+.||++|||+|++|+|||||++++.. ||. .|. +|||... ..
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99989999999999999999999999999999999999999998776 444 344 3665321 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHH
Q 012937 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (453)
Q Consensus 163 ~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~ 242 (453)
..++|+||+++|||+|++++|+.. ++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEIN---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHH
Confidence 579999999999999999999864 788999999999999999999999999998854 6799999999999999999
Q ss_pred HHhcc--CCCCCHHHHHHh-cCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccCh
Q 012937 243 LVGNR--LPKFTKSQAEMV-KGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYP 319 (453)
Q Consensus 243 ~l~~~--lp~ft~~e~~~i-k~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P 319 (453)
.++++ .|.||++|+++| ++++||||||||++.+|+....... ..+..+ ... .. .|..+.+++|| +|+|
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~--~~~~~~--~~~--~~--~~~~~~~~~gw-~i~P 352 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQ--LDYVET--RDL--VS--NPYVKASEWGW-QIDP 352 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCC--CCcccc--ccc--cc--CCCcccCCCCC-ccCc
Confidence 99763 478999999988 6899999999999999875321100 000000 000 01 24456788999 8999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHH-HcCCCCeEEEEeccCcccc
Q 012937 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI-NSGGVDVRGYFAWSFLDNY 398 (453)
Q Consensus 320 ~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai-~d~Gv~V~GY~~WSl~Dn~ 398 (453)
+||+.+|++++++|++| |||||||++..++ .+.++.++|++||.||++||++|++|| +| ||||+||++|||||||
T Consensus 353 ~Gl~~~L~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~d-Gv~V~GY~~WSl~Dn~ 428 (476)
T PRK09589 353 AGLRYSLNWFWDHYQLP-LFIVENGFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVED-GVDLMGYTPWGCIDLV 428 (476)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccccccc
Confidence 99999999999999975 9999999998765 345678999999999999999999999 89 9999999999999999
Q ss_pred cccCC-CcceeeeEEEeCCC----CcccccccHHHHHHHHHHcCC
Q 012937 399 EWEYG-YTSRFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQT 438 (453)
Q Consensus 399 EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~ 438 (453)
||.+| |++|||||+|||++ |++|+||+|++||+++|+++.
T Consensus 429 Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ng 473 (476)
T PRK09589 429 SAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNG 473 (476)
T ss_pred cccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHHhcC
Confidence 99999 99999999999985 469999999999999998764
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.4e-113 Score=895.81 Aligned_cols=399 Identities=28% Similarity=0.519 Sum_probs=350.5
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 78999999999999999999999999999999999999974 35699999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh-----cccCccc-CcC-CCCCCCCCCCCCCCCCCCC
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV-----GECGYAK-GTK-APGRCSNYIGNCPAGNSAT 162 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~ 162 (453)
|++++|||+|+++++.|++||+.||++|||+|++|+|||||+++ +..||.. |.+ ||+.. ...
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhH
Confidence 99989999999999999999999999999999999999999987 6778874 775 45421 124
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHH
Q 012937 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (453)
Q Consensus 163 ~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~ 242 (453)
..++|+||+++|||+||+++|+.. ++++||+++++.+++|.+++|+|++||++++. ...||+||+++|+||+.|++
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHH
Confidence 589999999999999999999974 78999999999999999999999999998773 22359999999999999999
Q ss_pred HHhccC--CCCCHHHHHHh-cCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccCh
Q 012937 243 LVGNRL--PKFTKSQAEMV-KGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYP 319 (453)
Q Consensus 243 ~l~~~l--p~ft~~e~~~i-k~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P 319 (453)
.++++. |.+|++|+++| ++++||||||||++.+|+.........+.+ . .....|..+.+++|| +|+|
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~gw-~i~P 353 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGF-----E----GSVPNPYVKASDWGW-QIDP 353 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCcccc-----c----cccCCCCcccCCCCC-ccCc
Confidence 998764 78999999988 589999999999999997532100000000 0 000124445688999 7999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHH-cCCCCeEEEEeccCcccc
Q 012937 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLDNY 398 (453)
Q Consensus 320 ~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-d~Gv~V~GY~~WSl~Dn~ 398 (453)
+||+.+|++++++|++| |||||||++..++ .+.++.++|++||+||++||++|++||+ | ||||+||++|||||||
T Consensus 354 ~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~d-Gv~v~GY~~WSl~Dnf 429 (477)
T PRK15014 354 VGLRYALCELYERYQKP-LFIVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYD-GVDLMGYTPWGCIDCV 429 (477)
T ss_pred HHHHHHHHHHHHhcCCC-EEEeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhh
Confidence 99999999999999975 9999999998764 3456889999999999999999999995 9 9999999999999999
Q ss_pred cccCC-CcceeeeEEEeCCC----CcccccccHHHHHHHHHHcCC
Q 012937 399 EWEYG-YTSRFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQT 438 (453)
Q Consensus 399 EW~~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~ 438 (453)
||.+| |++|||||+|||++ +++|+||+|++||+++|++|.
T Consensus 430 Ew~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ng 474 (477)
T PRK15014 430 SFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNG 474 (477)
T ss_pred cccCCCccCccceEEECCCCCCCcccceecccHHHHHHHHHHhcC
Confidence 99999 99999999999985 479999999999999998764
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=4.6e-113 Score=893.31 Aligned_cols=402 Identities=30% Similarity=0.526 Sum_probs=358.1
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
++++||||||||+|||+||++||+++|||||+||||+|+|. .+.+|+++|+||+++|++|+++||+|||||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 78999999999999999999999999999999999999974 35689999999999999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcc-cCc-CCCCCCCCCCCCCCCCCCCChhHHH
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (453)
|++++|||+|+++++.|++||+.||++|||+|++|+|||||++++..||. .|. +|||... ....++|
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99988999999999999999999999999999999999999999999996 675 5887532 2458999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhcc
Q 012937 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (453)
Q Consensus 168 ~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~ 247 (453)
+||+++|||+||+++|+.. ++++||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.++++
T Consensus 210 ~hn~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 210 AHHELVASALATKIAHEVN---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhc
Confidence 9999999999999999874 7899999999999999999999999999877 55789999999999999999999764
Q ss_pred --CCCCCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHH
Q 012937 248 --LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIREL 325 (453)
Q Consensus 248 --lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~ 325 (453)
+|.||++|+++|++++||+|||||++.+|+....... .. ...... ....|..+.+++|| +|+|+||+.+
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~--~~--~~~~~~----~~~~p~~~~~~~gw-~i~P~Gl~~~ 356 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANN--SS--AANVVK----SLRNPYLQVSDWGW-GIDPLGLRIT 356 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCC--CC--cCCcee----cccCCCcccCCCCC-eeChHHHHHH
Confidence 7899999999999999999999999999975321000 00 000000 01125556788999 8999999999
Q ss_pred HHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCC-C
Q 012937 326 LLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYG-Y 404 (453)
Q Consensus 326 L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~G-y 404 (453)
|++++++|++| |||||||++..++ .+.++.++|++||.||++||++|++||++ ||||+|||+|||||||||.+| |
T Consensus 357 l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~d-Gv~V~GY~~WSl~Dn~Ew~~G~y 432 (474)
T PRK09852 357 MNMMYDRYQKP-LFLVENGLGAKDE--IAANGEINDDYRISYLREHIRAMGEAIAD-GIPLMGYTTWGCIDLVSASTGEM 432 (474)
T ss_pred HHHHHHhcCCC-EEEeCCCCCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEeecccccccccCCCc
Confidence 99999999976 9999999998765 34567899999999999999999999999 999999999999999999999 9
Q ss_pred cceeeeEEEeCCC----CcccccccHHHHHHHHHHcCCCC
Q 012937 405 TSRFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQTDV 440 (453)
Q Consensus 405 ~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~~~ 440 (453)
++|||||+|||++ |++|+||+|++||+++|+++..+
T Consensus 433 ~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ng~~ 472 (474)
T PRK09852 433 SKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIASNGED 472 (474)
T ss_pred cceeeeEEECCCCCCCcccceecccHHHHHHHHHHhCCcc
Confidence 9999999999985 57999999999999999988754
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=6.1e-110 Score=863.94 Aligned_cols=391 Identities=43% Similarity=0.783 Sum_probs=357.4
Q ss_pred CccccCCCCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
+|++.++.++++||||||||+|||++||+||+++|||||+||||+|+| .|++|++++++|+++|++|+++||+|||||
T Consensus 37 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 37 PGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred CCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 455666779999999999999999999999999999999999999997 489999999999999999999999999999
Q ss_pred ccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCC
Q 012937 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (453)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~ 161 (453)
+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|+|||||++++..||..|.+||+.++ .
T Consensus 115 ~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~-----------~ 182 (427)
T TIGR03356 115 YHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRD-----------L 182 (427)
T ss_pred ccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCcc-----------H
Confidence 999999999988 9999999999999999999999999999999999999999999999999998543 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHH
Q 012937 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (453)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 241 (453)
...++++||+++|||+||+++|++. |+++||++++..+++|.+++++|+.||++++++.++||+||++.|+||..|+
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 259 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLL 259 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHH
Confidence 4579999999999999999999975 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHH
Q 012937 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKG 321 (453)
Q Consensus 242 ~~l~~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~g 321 (453)
+.++ .+|.||++|++++++++||||||||++.+|+...... ... . .. .+..+.+++|| +|+|+|
T Consensus 260 ~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~~~-----~----~~--~~~~~~~~~gw-~i~P~G 323 (427)
T TIGR03356 260 EYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---AGF-----V----EV--PEGVPKTAMGW-EVYPEG 323 (427)
T ss_pred HHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---CCc-----c----cc--CCCCCcCCCCC-eechHH
Confidence 9997 4799999999999999999999999999987532110 000 0 00 12235678999 899999
Q ss_pred HHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCccccccc
Q 012937 322 IRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWE 401 (453)
Q Consensus 322 l~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~ 401 (453)
|+.+|+++++||++|||||||||++..++ .+ ++.++|++||+||++||++|++||+| ||||+||++|||+|||||.
T Consensus 324 l~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~Ri~yl~~hl~~~~~Ai~d-Gv~v~GY~~Wsl~Dn~ew~ 399 (427)
T TIGR03356 324 LYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPERIAYLRDHLAALARAIEE-GVDVRGYFVWSLLDNFEWA 399 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEecccccccchh
Confidence 99999999999998889999999998764 23 67899999999999999999999999 9999999999999999999
Q ss_pred CCCcceeeeEEEeCCCCcccccccHHHHH
Q 012937 402 YGYTSRFGIIYVDYKDGLRRSLKNSALWF 430 (453)
Q Consensus 402 ~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y 430 (453)
+||++|||||+||++ |++|+||+|++||
T Consensus 400 ~gy~~rfGl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 400 EGYSKRFGLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred cccccccceEEECCC-CCcccccceeeeC
Confidence 999999999999998 8999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.61 E-value=2.2e-13 Score=132.81 Aligned_cols=250 Identities=17% Similarity=0.218 Sum_probs=158.0
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeE--EEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHh
Q 012937 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP--FVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (453)
Q Consensus 40 i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (453)
+-|++++|++ |++|++. .+++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHh
Confidence 3699999997 9999865 668999999999995 4456677899998642 2 5678899999999999999
Q ss_pred cCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 012937 118 GDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAA-HHLILSHATAVKLYRQNYQASQNGLIGI 196 (453)
Q Consensus 118 ~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~-h~~l~Aha~a~~~~r~~~~~~~~g~vGi 196 (453)
+++|..|.++|||......|+....| +.+. ... -..|.++.|+.. |++++-+
T Consensus 71 ~g~i~~wdV~NE~~~~~~~~~~~~~w---------------------~~~~G~~~---i~~af~~ar~~~---P~a~l~~ 123 (254)
T smart00633 71 KGKIYAWDVVNEALHDNGSGLRRSVW---------------------YQILGEDY---IEKAFRYAREAD---PDAKLFY 123 (254)
T ss_pred CCcceEEEEeeecccCCCcccccchH---------------------HHhcChHH---HHHHHHHHHHhC---CCCEEEE
Confidence 99999999999998532111111011 1111 111 124666667764 6666643
Q ss_pred EecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhccCCCCCHHHHHHhcCCcceeEeecccccee
Q 012937 197 TVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYA 276 (453)
Q Consensus 197 ~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v 276 (453)
. ......+ . .. ......+ .+ ++..-...+|=||++....
T Consensus 124 N-dy~~~~~---~-~k---~~~~~~~------------------v~------------~l~~~g~~iDgiGlQ~H~~--- 162 (254)
T smart00633 124 N-DYNTEEP---N-AK---RQAIYEL------------------VK------------KLKAKGVPIDGIGLQSHLS--- 162 (254)
T ss_pred e-ccCCcCc---c-HH---HHHHHHH------------------HH------------HHHHCCCccceeeeeeeec---
Confidence 2 2111111 0 00 1111111 11 1111123578899842210
Q ss_pred eecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCc
Q 012937 277 EEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPIS 356 (453)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~ 356 (453)
. . ...|..|...|..+.+. +. ||+|||.++...++
T Consensus 163 -~-~-----------------------------------~~~~~~~~~~l~~~~~~-g~-pi~iTE~dv~~~~~------ 197 (254)
T smart00633 163 -L-G-----------------------------------SPNIAEIRAALDRFASL-GL-EIQITELDISGYPN------ 197 (254)
T ss_pred -C-C-----------------------------------CCCHHHHHHHHHHHHHc-CC-ceEEEEeecCCCCc------
Confidence 0 0 01245799999999765 65 59999999987531
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCCcceeeeEEEeCCCCcccccccHHHH
Q 012937 357 YALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRFGIIYVDYKDGLRRSLKNSALW 429 (453)
Q Consensus 357 ~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~ 429 (453)
.....+++++.+. ++.+ -=.|.|.+.|.+.|..+|..+ .+.||+.=|++ ||+++++
T Consensus 198 ----~~~qA~~~~~~l~----~~~~-~p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~~------~kpa~~~ 253 (254)
T smart00633 198 ----PQAQAADYEEVFK----ACLA-HPAVTGVTVWGVTDKYSWLDG--GAPLLFDANYQ------PKPAYWA 253 (254)
T ss_pred ----HHHHHHHHHHHHH----HHHc-CCCeeEEEEeCCccCCcccCC--CCceeECCCCC------CChhhhc
Confidence 1445556655555 4433 227899999999999999766 56789755554 8887754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.26 E-value=2.8e-11 Score=118.41 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=92.0
Q ss_pred chHHHHHHHHHcCCCEEEecccccccc-cCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCC
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
-.++|++.||++|+|++|+.|.|..++ |.+ .+.++...++.++++|+.+.++||.++|+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 678999999999999999999998888 565 357999999999999999999999999999975 7775433 3333
Q ss_pred C-hhhHHHHHHHHHHHHHHhcC--cceEEEeccCcchh
Q 012937 99 S-PKIVKDFGDYADLCFKEFGD--RVKHWITLNEPETV 133 (453)
Q Consensus 99 ~-~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 133 (453)
. ....+.|.++++.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 3 45788899999999999954 48899999999864
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.22 E-value=2.5e-11 Score=124.85 Aligned_cols=109 Identities=25% Similarity=0.444 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHcCCCEEEe-cccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhh---
Q 012937 19 FRYKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY--- 94 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~-si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~--- 94 (453)
..+++|+++||++|+|++|+ .++|++++|+. |++|+. .+|++|+.+.++||++++.+.+...|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF~---~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDFS---WLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB---H---HHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---CeeecH---HHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 56899999999999999997 57999999997 999985 478999999999999999999999999997642
Q ss_pred ------------CCC-----CChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcchh
Q 012937 95 ------------GGF-----LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPETV 133 (453)
Q Consensus 95 ------------ggw-----~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~ 133 (453)
|+. .+|...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 222 24567888889999999999986 8899999999754
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.15 E-value=1.2e-08 Score=102.59 Aligned_cols=250 Identities=16% Similarity=0.277 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc---CCCchhhhhhhCCCC
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQALEDEYGGFL 98 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H---~~~P~~l~~~~ggw~ 98 (453)
++=+++||+.|+|++|+-+ | +-|.. .|.-| ++.-.++..+.+++||+.+|++|- |.=|..-.. ..+|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCC
Confidence 4457999999999999977 4 33442 15444 467789999999999999999874 344443222 26898
Q ss_pred C---hhhHHHHHHHHHHHHHHhcC---cceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 012937 99 S---PKIVKDFGDYADLCFKEFGD---RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLI 172 (453)
Q Consensus 99 ~---~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l 172 (453)
+ .+..+.-.+|.+.+.+.+.+ .++++.+=||.+.-.. +|-|.. .-+.-+-.++
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll 156 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLL 156 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHH
Confidence 8 57788888999999988854 4788888899874221 333321 2233344556
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhccCCCCC
Q 012937 173 LSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFT 252 (453)
Q Consensus 173 ~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~lp~ft 252 (453)
.| +++++|+.. ++.+|.+.+... . |... ..||.|-+.
T Consensus 157 ~a---g~~AVr~~~---p~~kV~lH~~~~----~-----~~~~--------~~~~f~~l~-------------------- 193 (332)
T PF07745_consen 157 NA---GIKAVREVD---PNIKVMLHLANG----G-----DNDL--------YRWFFDNLK-------------------- 193 (332)
T ss_dssp HH---HHHHHHTHS---STSEEEEEES-T----T-----SHHH--------HHHHHHHHH--------------------
T ss_pred HH---HHHHHHhcC---CCCcEEEEECCC----C-----chHH--------HHHHHHHHH--------------------
Confidence 55 445555553 778886555431 1 1111 123333211
Q ss_pred HHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHH
Q 012937 253 KSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLKKK 332 (453)
Q Consensus 253 ~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~L~~~~~r 332 (453)
......|.||++||.- | .-....|...|+.+.+|
T Consensus 194 -----~~g~d~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~r 227 (332)
T PF07745_consen 194 -----AAGVDFDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASR 227 (332)
T ss_dssp -----HTTGG-SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHH
T ss_pred -----hcCCCcceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHH
Confidence 1123569999999941 1 11345899999999999
Q ss_pred cCCCCEEEeecCccCCCCC-CCCCc--c--------ccCchhHHHHHHHHHHHHHHHHHc-CCCCeEEEEeccCc
Q 012937 333 YNPPPIYITENGVGDVNSS-SWPIS--Y--------ALNDTVRVNYYNDHLSYILEAINS-GGVDVRGYFAWSFL 395 (453)
Q Consensus 333 Y~~ppI~ITENG~~~~~~~-~~~~~--~--------~i~D~~Ri~yl~~hl~~v~~Ai~d-~Gv~V~GY~~WSl~ 395 (453)
|++| |+|+|.|++...+. +-..+ + ...-+.-. +.|..+.+++.+ -|-...|.|+|---
T Consensus 228 y~K~-V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~----~~l~~l~~~v~~~p~~~g~GvfYWeP~ 297 (332)
T PF07745_consen 228 YGKP-VMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQA----DFLRDLINAVKNVPNGGGLGVFYWEPA 297 (332)
T ss_dssp HT-E-EEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHH----HHHHHHHHHHHTS--TTEEEEEEE-TT
T ss_pred hCCe-eEEEeccccccccccccccccCccccccCCCCCCHHHHH----HHHHHHHHHHHHhccCCeEEEEeeccc
Confidence 9885 99999998876211 00000 0 00112223 445555556642 04689999999543
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.13 E-value=1.6e-08 Score=110.38 Aligned_cols=265 Identities=19% Similarity=0.188 Sum_probs=152.2
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhh------
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED------ 92 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~------ 92 (453)
..+..|+++||++|+|++|+| ..|.. + ++++.|-+.||-++.-+.-|....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~-------~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS-------E-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC-------H-------HHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 457889999999999999995 23432 1 6788899999988865533222222210
Q ss_pred -hhCCCC----ChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhH
Q 012937 93 -EYGGFL----SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPY 165 (453)
Q Consensus 93 -~~ggw~----~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 165 (453)
....|. +++..+.+.+-++.+++++..+ |-.|..-||+... .++ .
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------~ 425 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------A 425 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh------------------H
Confidence 001222 3567788889899999999887 8899999997310 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHh
Q 012937 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG 245 (453)
Q Consensus 166 ~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~ 245 (453)
. . .+...++++|+.. +.-.|..+.+... .+ .
T Consensus 426 ~---~---~~~~l~~~~k~~D---ptR~vt~~~~~~~-~~--~------------------------------------- 456 (604)
T PRK10150 426 R---E---YFAPLAELTRKLD---PTRPVTCVNVMFA-TP--D------------------------------------- 456 (604)
T ss_pred H---H---HHHHHHHHHHhhC---CCCceEEEecccC-Cc--c-------------------------------------
Confidence 0 1 1223455667664 3333443332110 00 0
Q ss_pred ccCCCCCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHH
Q 012937 246 NRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIREL 325 (453)
Q Consensus 246 ~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~ 325 (453)
...+...+|++|+|.|...+..... . . .+ -..|...
T Consensus 457 ----------~~~~~~~~Dv~~~N~Y~~wy~~~~~--------------~--------------~-----~~-~~~~~~~ 492 (604)
T PRK10150 457 ----------TDTVSDLVDVLCLNRYYGWYVDSGD--------------L--------------E-----TA-EKVLEKE 492 (604)
T ss_pred ----------cccccCcccEEEEcccceecCCCCC--------------H--------------H-----HH-HHHHHHH
Confidence 0012234699999998654321100 0 0 00 0124455
Q ss_pred HHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCCc
Q 012937 326 LLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYT 405 (453)
Q Consensus 326 L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy~ 405 (453)
+....+.|++ ||+|||.|.+.........++.-..++-..|+++|+. ++++ -=-|.|-|.|.+.|- .+..|..
T Consensus 493 ~~~~~~~~~k-P~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~----~~~~-~p~~~G~~iW~~~D~-~~~~g~~ 565 (604)
T PRK10150 493 LLAWQEKLHK-PIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHR----VFDR-VPAVVGEQVWNFADF-ATSQGIL 565 (604)
T ss_pred HHHHHHhcCC-CEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHH----HHhc-CCceEEEEEEeeecc-CCCCCCc
Confidence 5555666755 5999999954321100000111124455566666665 4544 347999999999993 2222211
Q ss_pred ----ceeeeEEEeCCCCcccccccHHHHHHHHHHc
Q 012937 406 ----SRFGIIYVDYKDGLRRSLKNSALWFKKFLRN 436 (453)
Q Consensus 406 ----~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~ 436 (453)
...||+ +..|+||+++++||++-+.
T Consensus 566 ~~~g~~~Gl~------~~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 566 RVGGNKKGIF------TRDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred ccCCCcceeE------cCCCCChHHHHHHHHHhhc
Confidence 356775 3567899999999999853
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.01 E-value=2.3e-08 Score=106.36 Aligned_cols=291 Identities=21% Similarity=0.321 Sum_probs=138.7
Q ss_pred hHHHHHHHH-HcCCCEEEec--c--ccccccc-CCCCCCC--CChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhh
Q 012937 21 YKEDIALVK-QVGFDSIRFS--I--SWSRILP-HGNISGG--VNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (453)
Q Consensus 21 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~p-~~~~~g~--~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~ 92 (453)
+++.+..++ ++|++.+||- + +..-..+ ++ +|. +|+ ...|+++|.|+++||+|+|.|.. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 566666665 9999999996 3 2222222 22 132 687 56779999999999999999986 6776642
Q ss_pred h------hCCCCC-hhhHHHHHHHHHHHHHHhcC-----cce--EEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCC
Q 012937 93 E------YGGFLS-PKIVKDFGDYADLCFKEFGD-----RVK--HWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAG 158 (453)
Q Consensus 93 ~------~ggw~~-~~~~~~f~~ya~~~~~~~~~-----~v~--~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~ 158 (453)
. +.|+.+ |+..+.+.++++.+++|+-+ .|. +|.+||||++..+. ..|.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-------~~~~----------- 175 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-------WDGT----------- 175 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-------GGG------------
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-------CCCC-----------
Confidence 1 123333 56677787777666666543 365 56899999974211 1110
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCH
Q 012937 159 NSATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPR 238 (453)
Q Consensus 159 ~~~~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~ 238 (453)
.+.| ..+ ...+++++|+.. |..+||-- ...... . ......
T Consensus 176 ---~~ey---~~l---y~~~~~~iK~~~---p~~~vGGp-----~~~~~~-~---~~~~~~------------------- 215 (486)
T PF01229_consen 176 ---PEEY---FEL---YDATARAIKAVD---PELKVGGP-----AFAWAY-D---EWCEDF------------------- 215 (486)
T ss_dssp ---HHHH---HHH---HHHHHHHHHHH----TTSEEEEE-----EEETT--T---HHHHHH-------------------
T ss_pred ---HHHH---HHH---HHHHHHHHHHhC---CCCcccCc-----cccccH-H---HHHHHH-------------------
Confidence 1111 122 334666777765 78899844 111000 0 011111
Q ss_pred hHHHHHhccCCCCCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccC
Q 012937 239 SMQHLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIY 318 (453)
Q Consensus 239 ~~~~~l~~~lp~ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~ 318 (453)
.+++.. -.-.+||+.+..|......... +. ... . ..+. ..+.
T Consensus 216 --l~~~~~------------~~~~~DfiS~H~y~~~~~~~~~-----------~~-~~~---~-------~~~~--~~~~ 257 (486)
T PF01229_consen 216 --LEFCKG------------NNCPLDFISFHSYGTDSAEDIN-----------EN-MYE---R-------IEDS--RRLF 257 (486)
T ss_dssp --HHHHHH------------CT---SEEEEEEE-BESESE-S-----------S--EEE---E-------B--H--HHHH
T ss_pred --HHHHhc------------CCCCCCEEEEEecccccccccc-----------hh-HHh---h-------hhhH--HHHH
Confidence 111111 1125699999999754321110 00 000 0 0000 0111
Q ss_pred hHHHHHHHHHHHHH-cCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHH-cCCCCeEEEEeccCcc
Q 012937 319 PKGIRELLLYLKKK-YNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLD 396 (453)
Q Consensus 319 P~gl~~~L~~~~~r-Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-d~Gv~V~GY~~WSl~D 396 (453)
| .|..+.+.+.+. +++.|+++||-+...... ..++|+. |-..++.. ..++ . |..+-++.+|++.|
T Consensus 258 ~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~------~~~~dt~---~~aA~i~k--~lL~~~-~~~l~~~sywt~sD 324 (486)
T PF01229_consen 258 P-ELKETRPIINDEADPNLPLYITEWNASISPR------NPQHDTC---FKAAYIAK--NLLSND-GAFLDSFSYWTFSD 324 (486)
T ss_dssp H-HHHHHHHHHHTSSSTT--EEEEEEES-SSTT-------GGGGSH---HHHHHHHH---HHHHG-GGT-SEEEES-SBS
T ss_pred H-HHHHHHHHHhhccCCCCceeecccccccCCC------cchhccc---cchhhHHH--HHHHhh-hhhhhhhhccchhh
Confidence 2 244443333333 344579999966554321 2345543 33333322 1332 4 66677788999999
Q ss_pred cccccCC----CcceeeeEEEeCCCCcccccccHHHHHHHH
Q 012937 397 NYEWEYG----YTSRFGIIYVDYKDGLRRSLKNSALWFKKF 433 (453)
Q Consensus 397 n~EW~~G----y~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 433 (453)
.||=..- +.--|||+..+ .++|+|++-|+=+
T Consensus 325 ~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~L 359 (486)
T PF01229_consen 325 RFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQLL 359 (486)
T ss_dssp ---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHHH
T ss_pred hhhccCCCCCceecchhhhhcc------CCCchHHHHHHHH
Confidence 9994221 44558997543 6799998877654
No 20
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.87 E-value=7.2e-07 Score=89.98 Aligned_cols=288 Identities=20% Similarity=0.248 Sum_probs=167.4
Q ss_pred cCccccchHH-HHHHHHHcCCCEEEec--ccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE--ecccCCCch
Q 012937 14 ADNFYFRYKE-DIALVKQVGFDSIRFS--ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV--TLFHWDTPQ 88 (453)
Q Consensus 14 a~d~y~r~~e-Di~l~~~lG~~~~R~s--i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v--tL~H~~~P~ 88 (453)
|.++.+.-.+ ....+-.--+|.+-.. .-|..++|.+ |++|.+. .+++++-++++||++-- -+.|--.|.
T Consensus 15 av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~ 88 (320)
T PF00331_consen 15 AVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPD 88 (320)
T ss_dssp EEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-H
T ss_pred EechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCC---CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccc
Confidence 4444433332 3555555567777775 8999999997 9999865 67999999999999873 344667999
Q ss_pred hhhhhhCCCCChh---hHHHHHHHHHHHHHHhcC--cceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCCh
Q 012937 89 ALEDEYGGFLSPK---IVKDFGDYADLCFKEFGD--RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATE 163 (453)
Q Consensus 89 ~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~ 163 (453)
|+... .-+...+ ......+|.+.+++||++ +|..|-+.|||.-... .+-|.+. ..
T Consensus 89 w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~------------~~ 148 (320)
T PF00331_consen 89 WVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD------------SP 148 (320)
T ss_dssp HHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCT------------SH
T ss_pred eeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccC------------Ch
Confidence 99752 1233333 788999999999999994 8999999999974321 0111111 12
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHH
Q 012937 164 PYVAAH--HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (453)
Q Consensus 164 ~~~~~h--~~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 241 (453)
.++++- .+ ..|.+.-|+.. |+++.=+. ......+ +. ...... |+
T Consensus 149 ~~~~lG~~yi----~~aF~~A~~~~---P~a~L~~N-Dy~~~~~------~k--~~~~~~------------------lv 194 (320)
T PF00331_consen 149 WYDALGPDYI----ADAFRAAREAD---PNAKLFYN-DYNIESP------AK--RDAYLN------------------LV 194 (320)
T ss_dssp HHHHHTTCHH----HHHHHHHHHHH---TTSEEEEE-ESSTTST------HH--HHHHHH------------------HH
T ss_pred hhhcccHhHH----HHHHHHHHHhC---CCcEEEec-cccccch------HH--HHHHHH------------------HH
Confidence 233221 12 23455556554 56665332 2221111 00 000100 11
Q ss_pred HHHhccCCCCCHHHHHHhcC-CcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChH
Q 012937 242 HLVGNRLPKFTKSQAEMVKG-SVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPK 320 (453)
Q Consensus 242 ~~l~~~lp~ft~~e~~~ik~-~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~ 320 (453)
+.+ . -+| ++|=||++-.-.. +. . |.
T Consensus 195 ~~l------------~-~~gvpIdgIG~Q~H~~~--------------------------------------~~-~--~~ 220 (320)
T PF00331_consen 195 KDL------------K-ARGVPIDGIGLQSHFDA--------------------------------------GY-P--PE 220 (320)
T ss_dssp HHH------------H-HTTHCS-EEEEEEEEET--------------------------------------TS-S--HH
T ss_pred HHH------------H-hCCCccceechhhccCC--------------------------------------CC-C--HH
Confidence 111 1 122 5788888543110 00 1 67
Q ss_pred HHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCC--CeEEEEeccCcccc
Q 012937 321 GIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGV--DVRGYFAWSFLDNY 398 (453)
Q Consensus 321 gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv--~V~GY~~WSl~Dn~ 398 (453)
.+...|+++.+ .+. ||.|||.-+...+.. ...-.+..+.+++++.+. ++-+ -- .|.|.+.|.+.|+.
T Consensus 221 ~i~~~l~~~~~-~Gl-~i~ITElDv~~~~~~----~~~~~~~~qA~~~~~~~~----~~~~-~~~~~v~git~Wg~~D~~ 289 (320)
T PF00331_consen 221 QIWNALDRFAS-LGL-PIHITELDVRDDDNP----PDAEEEEAQAEYYRDFLT----ACFS-HPPAAVEGITWWGFTDGY 289 (320)
T ss_dssp HHHHHHHHHHT-TTS-EEEEEEEEEESSSTT----SCHHHHHHHHHHHHHHHH----HHHH-TTHCTEEEEEESSSBTTG
T ss_pred HHHHHHHHHHH-cCC-ceEEEeeeecCCCCC----cchHHHHHHHHHHHHHHH----HHHh-CCccCCCEEEEECCCCCC
Confidence 89999999854 565 599999998876421 001124455566666654 4443 33 89999999999999
Q ss_pred cccCCCcc-eeeeEEEeCCCCcccccccHHHHHHH
Q 012937 399 EWEYGYTS-RFGIIYVDYKDGLRRSLKNSALWFKK 432 (453)
Q Consensus 399 EW~~Gy~~-rfGL~~VD~~~~~~R~pK~S~~~y~~ 432 (453)
+|.....+ +=+|+.-|+. ||++++.+.+
T Consensus 290 sW~~~~~~~~~~lfd~~~~------~Kpa~~~~~~ 318 (320)
T PF00331_consen 290 SWRPDTPPDRPLLFDEDYQ------PKPAYDAIVD 318 (320)
T ss_dssp STTGGHSEG--SSB-TTSB------B-HHHHHHHH
T ss_pred cccCCCCCCCCeeECCCcC------CCHHHHHHHh
Confidence 99776333 3366544444 9999887765
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=8.8e-07 Score=86.96 Aligned_cols=270 Identities=18% Similarity=0.186 Sum_probs=157.6
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE-ec-ccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHh
Q 012937 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-TL-FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (453)
Q Consensus 40 i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v-tL-~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (453)
+-|.-|+|+. |.+|+++ -|.+.+-++++|+..-- || .|--.|.|+.- --+..+...+...++-..|+.||
T Consensus 67 mKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4678888875 8999876 55899999999997543 22 35578999853 23677899999999999999999
Q ss_pred cCcceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 012937 118 GDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGIT 197 (453)
Q Consensus 118 ~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~r~~~~~~~~g~vGi~ 197 (453)
.+.|..|-+.|||-- ..-++....+.-+.. +.+ ++- +|.+.-|+.. |+++.-+.
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd------~I~----~aF~~Aread---P~AkL~~N 192 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPD------YIK----LAFHIAREAD---PDAKLVIN 192 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccH------HHH----HHHHHHHhhC---CCceEEee
Confidence 999999999999964 221222111111110 122 222 2444446543 77776432
Q ss_pred ecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhccCCCCCHHHHHHhcC-CcceeEeecccccee
Q 012937 198 VSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFTKSQAEMVKG-SVDFLGLNYYTADYA 276 (453)
Q Consensus 198 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~lp~ft~~e~~~ik~-~~DFiGlNyYt~~~v 276 (453)
. .. ...+|. .+.. +. -|++.| +-+| ++|=+|++-- +
T Consensus 193 D-Y~----ie~~~~----kr~~--~~---------------nlI~~L-------------kekG~pIDgiG~QsH----~ 229 (345)
T COG3693 193 D-YS----IEGNPA----KRNY--VL---------------NLIEEL-------------KEKGAPIDGIGIQSH----F 229 (345)
T ss_pred c-cc----ccCChH----HHHH--HH---------------HHHHHH-------------HHCCCCccceeeeee----e
Confidence 2 21 122221 1111 00 022211 1144 4788887632 0
Q ss_pred eecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCc
Q 012937 277 EEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPIS 356 (453)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~ 356 (453)
+ .+| ..++-.+..+....+. +. +|+|||--|.+... ..
T Consensus 230 ~----------------------------------~~~--~~~~~~~~a~~~~~k~-Gl-~i~VTELD~~~~~P----~~ 267 (345)
T COG3693 230 S----------------------------------GDG--PSIEKMRAALLKFSKL-GL-PIYVTELDMSDYTP----DS 267 (345)
T ss_pred c----------------------------------CCC--CCHHHHHHHHHHHhhc-CC-CceEEEeeeeccCC----CC
Confidence 0 012 1122344444444444 65 59999999887431 11
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCCcceee-----eEEEeCCCCcccccccHHHHHH
Q 012937 357 YALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRFG-----IIYVDYKDGLRRSLKNSALWFK 431 (453)
Q Consensus 357 ~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy~~rfG-----L~~VD~~~~~~R~pK~S~~~y~ 431 (453)
+...+..+..+.+ .+.-.-...- +..|.+.+.|.++|+++|..|..+|++ ++.-+ =.||+...+..
T Consensus 268 ~~p~~~~~~~~~~--~~~f~~~~~~-~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n------~~pKPa~~aI~ 338 (345)
T COG3693 268 GAPRLYLQKAASR--AKAFLLLLLN-PNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDN------YQPKPAYKAIA 338 (345)
T ss_pred ccHHHHHHHHHHH--HHHHHHHHhc-ccccceEEEeeeccCcccccCCccCcCCCCCcccCCC------CCcchHHHHHH
Confidence 1112222222221 1111122234 667999999999999999999998885 22222 34999999998
Q ss_pred HHHHcC
Q 012937 432 KFLRNQ 437 (453)
Q Consensus 432 ~ii~~~ 437 (453)
++.+.+
T Consensus 339 e~la~~ 344 (345)
T COG3693 339 EVLAPH 344 (345)
T ss_pred HHhcCC
Confidence 776653
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1.6e-06 Score=94.15 Aligned_cols=119 Identities=18% Similarity=0.355 Sum_probs=89.8
Q ss_pred chHHHHHHHHHcCCCEEEec-ccccccccCCCCCCCCChhHHHHHHHH-HHHHHHCCCeEEEec-ccCCCchhhhhh---
Q 012937 20 RYKEDIALVKQVGFDSIRFS-ISWSRILPHGNISGGVNQQGVDFYNNL-INELISNGLTPFVTL-FHWDTPQALEDE--- 93 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~s-i~W~ri~p~~~~~g~~n~~~~~~y~~~-i~~l~~~Gi~p~vtL-~H~~~P~~l~~~--- 93 (453)
-|.+|+++||++|+|++|.+ ++|++++|+. |++|+. +.|.. ++.+.+.||.+++.- .....|.|+..+
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 37889999999999999995 6999999997 999997 45566 999999999999987 667889998764
Q ss_pred ------------hCCCCCh-hhHHHHHHHHHH----HHHH-hcCc--ceEEEeccCcch-hcccCcccCcCC
Q 012937 94 ------------YGGFLSP-KIVKDFGDYADL----CFKE-FGDR--VKHWITLNEPET-VGECGYAKGTKA 144 (453)
Q Consensus 94 ------------~ggw~~~-~~~~~f~~ya~~----~~~~-~~~~--v~~w~t~NEp~~-~~~~gy~~G~~~ 144 (453)
.|+|.+- -+-..+.+|++. +.+| |++. |-.|.+-||=.. .|++.|....|+
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 3778553 233356666666 7777 6664 888999997444 344444444433
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.26 E-value=8e-05 Score=74.25 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCC
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 96 (453)
....++.|+.+||++|+|++|++. .|.. .++++.|-+.||-++.-+.....-.|-. .|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 457889999999999999999943 2221 1677788899999987654322111210 010
Q ss_pred ----CCChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCc
Q 012937 97 ----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (453)
Q Consensus 97 ----w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 130 (453)
-.++...+.+.+-++.+++++.++ |-.|...||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135778888989999999999886 8999999998
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=7.9e-06 Score=85.14 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=85.8
Q ss_pred cCccccch-----HHHHHHHHHcCCCEEEecccccccccCCCCC-CCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 14 ADNFYFRY-----KEDIALVKQVGFDSIRFSISWSRILPHGNIS-GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 14 a~d~y~r~-----~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
..-....| ++|+..||+.|+|++|+.|.|-.+.+....+ ...+...+.+.+++|+..++.||.+++.||+..-+
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33445566 8999999999999999999865554432001 22324445589999999999999999999986633
Q ss_pred hhhhhhh---CCCC-ChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcch
Q 012937 88 QALEDEY---GGFL-SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (453)
Q Consensus 88 ~~l~~~~---ggw~-~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 132 (453)
.--++.. +.+. ....++++.+-++.++.+|++. |-...++|||+.
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 3222221 1222 3567899999999999999884 555678999984
No 25
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.0038 Score=61.04 Aligned_cols=255 Identities=15% Similarity=0.298 Sum_probs=143.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccc-CCC-CCCCCChhHHHHHHHHHHHHHHCCCeEEEecc---cCCCchhhhhhhCC
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILP-HGN-ISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTPQALEDEYGG 96 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p-~~~-~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P~~l~~~~gg 96 (453)
++=++.||+.|+|.+|+-| |-.=.. +|. ..|.-| .++---++-...+++||++++++| ||.=|..-. +.-.
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPka 141 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKA 141 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHH
Confidence 3445999999999999976 211111 110 002222 234455677888999999999987 466666533 3367
Q ss_pred CCCh---hhHHHHHHHHHHHHHHhcC---cceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 012937 97 FLSP---KIVKDFGDYADLCFKEFGD---RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHH 170 (453)
Q Consensus 97 w~~~---~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~ 170 (453)
|.+- ..-.+--+|.+.+.+.+.+ ..++-.+=||-+- |+ .||-|.. .-+.-+-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~--------------~~f~k~a~ 200 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEG--------------RNFDKMAA 200 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCC--------------cChHHHHH
Confidence 8763 3444555667777766644 3566667799763 22 2443321 11222334
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEecCceeecCCCCHHHHHHHHHHHHHhhcccccceecCCCCHhHHHHHhccCCC
Q 012937 171 LILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPK 250 (453)
Q Consensus 171 ~l~Aha~a~~~~r~~~~~~~~g~vGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~lp~ 250 (453)
++.| +++++|+.. |+-+|-+.+. .|.+++. .+|+.|-|.
T Consensus 201 L~n~---g~~avrev~---p~ikv~lHla----~g~~n~~-------------y~~~fd~lt------------------ 239 (403)
T COG3867 201 LLNA---GIRAVREVS---PTIKVALHLA----EGENNSL-------------YRWIFDELT------------------ 239 (403)
T ss_pred HHHH---HhhhhhhcC---CCceEEEEec----CCCCCch-------------hhHHHHHHH------------------
Confidence 4444 556667653 5666654432 3443321 134433322
Q ss_pred CCHHHHHHhcCCcceeEeeccccceeeecccCCCCCCCccCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHH
Q 012937 251 FTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLK 330 (453)
Q Consensus 251 ft~~e~~~ik~~~DFiGlNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~gw~~i~P~gl~~~L~~~~ 330 (453)
.-.-..|.||++||.-- + -.-..|...|..+.
T Consensus 240 -------k~nvdfDVig~SyYpyW---------------h--------------------------gtl~nL~~nl~dia 271 (403)
T COG3867 240 -------KRNVDFDVIGSSYYPYW---------------H--------------------------GTLNNLTTNLNDIA 271 (403)
T ss_pred -------HcCCCceEEeeeccccc---------------c--------------------------CcHHHHHhHHHHHH
Confidence 12235699999999421 0 01135888899999
Q ss_pred HHcCCCCEEEeecCccCCCCC-----C-CCCc-----cccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccC
Q 012937 331 KKYNPPPIYITENGVGDVNSS-----S-WPIS-----YALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSF 394 (453)
Q Consensus 331 ~rY~~ppI~ITENG~~~~~~~-----~-~~~~-----~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl 394 (453)
.||++. +||.|.+....-+. . .+.. -.+.=+-...++++-++.|... - +.+=.|.|+|--
T Consensus 272 ~rY~K~-VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p-~~~GlGvFYWEp 342 (403)
T COG3867 272 SRYHKD-VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--P-KSNGLGVFYWEP 342 (403)
T ss_pred HHhcCe-EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--C-CCCceEEEEecc
Confidence 999985 99999886322110 0 0111 1122234456777777665432 2 456789999954
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.69 E-value=0.00022 Score=71.87 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=72.5
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc---c--C---CCchhhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H--W---DTPQALE 91 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H--~---~~P~~l~ 91 (453)
.|++-++.||++|+|++-+-|.|.-.+|.+ |++|+++..=.+++|+.++++|+.+++-.- | | .+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 378899999999999999999999999997 999999988899999999999999887532 1 3 4999998
Q ss_pred hhhCCCC---ChhhHHHHHHHHHHHHHHhcC-------cceEEEeccCc
Q 012937 92 DEYGGFL---SPKIVKDFGDYADLCFKEFGD-------RVKHWITLNEP 130 (453)
Q Consensus 92 ~~~ggw~---~~~~~~~f~~ya~~~~~~~~~-------~v~~w~t~NEp 130 (453)
.+.+... ++...+.-.+|.+.+++.... -|-.-++=||.
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 7533322 345666666666666666643 24555566764
No 27
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.46 E-value=0.0061 Score=58.93 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCccccc
Q 012937 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYE 399 (453)
Q Consensus 320 ~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~E 399 (453)
.++...|..++++|++| |.|||.|+..... .-.++.-..|+++-+ ..++. ---|.+|++.+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~kP-IWITEf~~~~~~~-------~~~~~~~~~fl~~~~----~~ld~-~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGKP-IWITEFGCWNGGS-------QGSDEQQASFLRQAL----PWLDS-QPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCCC-EEEEeecccCCCC-------CCCHHHHHHHHHHHH----HHHhc-CCCeeEEEecccccccC
Confidence 36888899999999975 9999999865211 113445455555544 45555 56799999999555443
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=97.17 E-value=0.0025 Score=70.98 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=83.5
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc--------cCCCchhhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQALE 91 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~~l~ 91 (453)
.|++=++.||.+|+|++-.=|-|.-.+|.+ |++|++|..=..++|+.+.+.|+-+++-.- .-++|.||.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 488889999999999999999999999997 999999999999999999999999888542 347999997
Q ss_pred hhhCCCC----ChhhHHHHHHHHHHHHHHhc---------CcceEEEeccC
Q 012937 92 DEYGGFL----SPKIVKDFGDYADLCFKEFG---------DRVKHWITLNE 129 (453)
Q Consensus 92 ~~~ggw~----~~~~~~~f~~ya~~~~~~~~---------~~v~~w~t~NE 129 (453)
.. .|.. ++...++-.+|.+.+++.+. .-|-...+=||
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 54 3422 45666666677777777663 22445555566
No 29
>PLN02161 beta-amylase
Probab=96.96 E-value=0.0041 Score=65.04 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-cC---------
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-HW--------- 84 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H~--------- 84 (453)
..+..-.+..++.||.+|++.+-+.+=|.-+|.++ .+++|+.+ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS--PLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 56666788899999999999999999999999988 59999965 99999999999999888765 42
Q ss_pred --CCchhhhhh-----------hCCC----------------CChhhHHHHHHHHHHHHHHhcCcceEEEeccCcch
Q 012937 85 --DTPQALEDE-----------YGGF----------------LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (453)
Q Consensus 85 --~~P~~l~~~-----------~ggw----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (453)
-||.|+.+. ..|. ..+.-++.+.+|-+...++|.+... -|+.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998652 0221 2233457888888888888877654 36666553
No 30
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.86 E-value=0.076 Score=52.88 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
+-.+.|+.+||+||+|++|+= -|-|.. =+++....|.++||-++++|.-
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~------------nHd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK------------NHDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC------------CHHHHHHHHHhCCCEEEEecCC
Confidence 367899999999999999973 222332 2788999999999999999974
No 31
>PLN02803 beta-amylase
Probab=96.82 E-value=0.005 Score=64.79 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=83.3
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c-----------CCC
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDT 86 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~ 86 (453)
.-.+..++.||++|++.+-+.+=|.-+|+++ .+++||.+ |+++++.+++.|++..+.|. | --|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDG--PMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 3467899999999999999999999999998 49999965 99999999999999888765 3 259
Q ss_pred chhhhhh-----------hCCC----------------CChhhHHHHHHHHHHHHHHhcCcceEEEeccCcch
Q 012937 87 PQALEDE-----------YGGF----------------LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (453)
Q Consensus 87 P~~l~~~-----------~ggw----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (453)
|.|+.+. .-|- ..+.-++.+.+|-+...+.|.+... -||.|..+
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 9997652 0121 2233457788888888888877654 46666554
No 32
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.81 E-value=0.013 Score=59.90 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHcCCCEEEecc---cc------------ccc--ccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhh
Q 012937 29 KQVGFDSIRFSI---SW------------SRI--LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (453)
Q Consensus 29 ~~lG~~~~R~si---~W------------~ri--~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 91 (453)
+-||++.+||.| ++ .|. ++.. +|.+|+.+=+-=+-++.+.+++|+.-++ ++-+..|.|+.
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~--dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT 133 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPA--DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMT 133 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-T--TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCC--CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHh
Confidence 349999999988 33 332 2222 4777775544455689999999999877 56678888876
Q ss_pred hhhC----C-----CCChhhHHHHHHHHHHHHHHhcC---cceEEEeccCcch
Q 012937 92 DEYG----G-----FLSPKIVKDFGDYADLCFKEFGD---RVKHWITLNEPET 132 (453)
Q Consensus 92 ~~~g----g-----w~~~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~ 132 (453)
.. | + =+.++..+.|+.|...|+++|.. .+++--+||||+.
T Consensus 134 ~N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 134 KN-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SS-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred cC-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 42 2 1 14478899999999999999933 4899999999983
No 33
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.78 E-value=0.0019 Score=66.23 Aligned_cols=106 Identities=19% Similarity=0.342 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c-----------CC
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~ 85 (453)
+.-.+..++.||++|++.+-+.+=|.-+|+.+ .+++|+++ |+++++.+++.|++..+.|. | .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~--p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG--PQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS--TTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC--CCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 44788999999999999999999999999997 49999855 99999999999999988763 3 46
Q ss_pred Cchhhhhh-----------hCC--------CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcc
Q 012937 86 TPQALEDE-----------YGG--------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (453)
Q Consensus 86 ~P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (453)
||.|+.+. .|. |....+++.+.+|-+...++|.+.. -|+-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998642 232 4454459999999999999998765 4555544
No 34
>PLN00197 beta-amylase; Provisional
Probab=96.78 E-value=0.0058 Score=64.49 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=83.4
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c-----------CCCc
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDTP 87 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P 87 (453)
-.+..++.||.+|++.+-+.+=|.-+|+++ .+++||.+ |.++++.+++.|++..+.|. | --||
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~--p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERES--PGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 478899999999999999999999999988 59999966 99999999999999888765 3 2599
Q ss_pred hhhhhh-----------hCCCC----------------ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcch
Q 012937 88 QALEDE-----------YGGFL----------------SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (453)
Q Consensus 88 ~~l~~~-----------~ggw~----------------~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (453)
.|+.+. ..|.. .+.-++.+.+|-+...++|.+... -||.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 997652 02211 223378888888888888887654 36666554
No 35
>PLN02801 beta-amylase
Probab=96.70 E-value=0.0095 Score=62.43 Aligned_cols=98 Identities=20% Similarity=0.332 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c-----------CCC
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDT 86 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~ 86 (453)
.-.+..+..||++|++.+-+.+=|.-+|..+ .+++|+.+ |+++++.+++.|++..+.|. | .-|
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKG--PKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 3478899999999999999999999999988 49999965 99999999999999877765 3 359
Q ss_pred chhhhhh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhcCcc
Q 012937 87 PQALEDE-----------YGG----------------FLSPKIVKDFGDYADLCFKEFGDRV 121 (453)
Q Consensus 87 P~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v 121 (453)
|.|+.+. ..| +..+.-++.+.+|-+...++|.+..
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9998752 012 1223346889999888888887753
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.53 E-value=0.018 Score=57.24 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEecc--ccccc-----ccCCCC---C------CCCChhHHHHHHHHHHHHHHCCCeEEEecccCC
Q 012937 22 KEDIALVKQVGFDSIRFSI--SWSRI-----LPHGNI---S------GGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si--~W~ri-----~p~~~~---~------g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 85 (453)
+.-++..|+-|+|.+|+.+ .|... .|.... + ..+|++-.++.+++|+.|.++||+|.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3447888999999999997 44433 111100 0 1389999999999999999999999876554 1
Q ss_pred CchhhhhhhCCCCC---hhhHHHHHHHHHHHHHHhcCc-ceEEEeccCc
Q 012937 86 TPQALEDEYGGFLS---PKIVKDFGDYADLCFKEFGDR-VKHWITLNEP 130 (453)
Q Consensus 86 ~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp 130 (453)
.| ..+ |.|-. .-..+.-.+|.+.|++||+.. =..|+.=||-
T Consensus 112 ~~---~~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CP---YVP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---HH--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Cc---ccc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 11 112 55543 344778889999999999998 4778888884
No 37
>PLN02905 beta-amylase
Probab=96.35 E-value=0.021 Score=61.16 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=79.8
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c----------
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H---------- 83 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H---------- 83 (453)
..+..-.+..+..||.+|++.+-+.+=|.-+|+.+ .+++||.+ |.++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g--P~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA--PQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45566688899999999999999999999999988 59999965 99999999999999888765 3
Q ss_pred -CCCchhhhhh-----------hCCCC----------------ChhhHHHHHHHHHHHHHHhcCc
Q 012937 84 -WDTPQALEDE-----------YGGFL----------------SPKIVKDFGDYADLCFKEFGDR 120 (453)
Q Consensus 84 -~~~P~~l~~~-----------~ggw~----------------~~~~~~~f~~ya~~~~~~~~~~ 120 (453)
--||.|+.+. ..|.. .+.-++.+.+|.+...++|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2599997652 01211 2344678888888888887664
No 38
>PLN02705 beta-amylase
Probab=96.33 E-value=0.021 Score=60.96 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-c-----------C
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------W 84 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~ 84 (453)
+-.-.+..+..||.+|++.+-+.+=|.-+|..+ .+++||.+ |.++++.+++.|++..+.|. | -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~--P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN--PQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 334578899999999999999999999999988 49999965 99999999999999877765 3 2
Q ss_pred CCchhhhhh-----------hCCCC----------------ChhhHHHHHHHHHHHHHHhcCc
Q 012937 85 DTPQALEDE-----------YGGFL----------------SPKIVKDFGDYADLCFKEFGDR 120 (453)
Q Consensus 85 ~~P~~l~~~-----------~ggw~----------------~~~~~~~f~~ya~~~~~~~~~~ 120 (453)
-||.|+.+. .-|.. .+.-++.+.+|.+..-+.|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 599998752 01211 2334588888888888888764
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.79 E-value=0.082 Score=48.25 Aligned_cols=103 Identities=19% Similarity=0.398 Sum_probs=65.7
Q ss_pred chHHHHHHHHHcCCCEEEecccccccc-----cCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~-----p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 94 (453)
+|+++++.|+++|++++=+- |+... |.....+.+.....+.++.+++++.+.||++++.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 58999999999999998533 44432 2210001222344577999999999999999999985 3455542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhcCc--ceEEEeccCcc
Q 012937 95 GGFLSPK-IVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (453)
Q Consensus 95 ggw~~~~-~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (453)
.+.+ -++.=..-++.+.++||.+ +..|-.-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2333344677778888875 45555555554
No 40
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.86 E-value=0.14 Score=55.46 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=78.3
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc--------cCCCchhhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQALE 91 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~~l~ 91 (453)
.|++=|+.+|++|+|++-.=+-|.-.+|.. |++|.+|.-=..++|....++|+-+++-+- |=.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 378888999999999999999999999997 999999988788999999999998776542 457898887
Q ss_pred hhhCCC---CChhhHHHHHHHHHHHHHHh
Q 012937 92 DEYGGF---LSPKIVKDFGDYADLCFKEF 117 (453)
Q Consensus 92 ~~~ggw---~~~~~~~~f~~ya~~~~~~~ 117 (453)
...|.- .|+.+..++.+|.+.++...
T Consensus 127 ~~pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 127 NVPGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred hCCceEEecCChHHHHHHHHHHHHHHHHH
Confidence 652321 36788888889998888844
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.64 E-value=0.17 Score=58.87 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=65.3
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCC
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 96 (453)
....++.||++||++|+|++|+| ..|.. + ++.+.|-+.||-++--..-.....+... -.
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------p-------~fydlcDe~GilV~dE~~~e~hg~~~~~--~~ 427 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------P-------LWYELCDRYGLYVVDEANIETHGMVPMN--RL 427 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHcCCEEEEecCccccCCcccc--CC
Confidence 55778999999999999999995 34432 1 5567888999988866421000000000 01
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcc
Q 012937 97 FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (453)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (453)
..+++..+.+.+=++.+++|...+ |-.|...||+.
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 124667777888888999999887 89999999974
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.43 E-value=0.37 Score=56.21 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=64.3
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc---c-CCCchhhhh
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H-WDTPQALED 92 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H-~~~P~~l~~ 92 (453)
....++.|+++||++|+|++|+| ..|.. + .+.+.|-+.||-++--.. | |.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~~-- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-------P-------RFYELCDIYGLFVMAETDVESHGFANVGDI-- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHCCCEEEECCcccccCccccccc--
Confidence 45678999999999999999996 34543 1 567888999998886431 1 1110000
Q ss_pred hhCCC--CChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCc
Q 012937 93 EYGGF--LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (453)
Q Consensus 93 ~~ggw--~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 130 (453)
.+ .++...+.|.+=++.+++|.+.+ |-.|..-||.
T Consensus 412 ---~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 ---SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 23456677777788999999887 8899999996
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.73 E-value=0.64 Score=52.55 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=68.1
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhh
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 94 (453)
+-.+..+..|+++||++|+|++|.| -.|+. ..+.+.|-+.||-++=-..+ +- +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 3445558999999999999999998 66664 15667778889988865432 21 2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcc
Q 012937 95 GGFLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (453)
Q Consensus 95 ggw~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (453)
|+..+++..+....=++..++|-..+ |-.|..=||+.
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 44456677777778888889998876 89999999955
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.49 E-value=0.15 Score=53.16 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=80.8
Q ss_pred hHHHHHHHHHcCCCEEEecccc-cccccCCCCCCCCChhH-HHHHHHHHHHHHHCCCeEEEecc----cCCCchhhhhhh
Q 012937 21 YKEDIALVKQVGFDSIRFSISW-SRILPHGNISGGVNQQG-VDFYNNLINELISNGLTPFVTLF----HWDTPQALEDEY 94 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W-~ri~p~~~~~g~~n~~~-~~~y~~~i~~l~~~Gi~p~vtL~----H~~~P~~l~~~~ 94 (453)
.+.|++.++.+|++..|++|-= ..+- +. .|..|.+. +.+.+.+++.+...+|++++||. |+.--.|.-.=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 4568899999999999999533 2322 22 37788777 89999999999999999999976 433323321101
Q ss_pred CC------CCChhhHHHHHHHHHHHHHHhcCc--ceEEEeccCcch
Q 012937 95 GG------FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (453)
Q Consensus 95 gg------w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 132 (453)
|+ -..+.....|.+|++.+++.|+.. +.-|+.-|||.+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 22 235678888999999999988876 678999999766
No 45
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=87.78 E-value=0.77 Score=47.23 Aligned_cols=99 Identities=15% Similarity=0.301 Sum_probs=69.9
Q ss_pred HHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCC-C-hhhHHH
Q 012937 28 VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL-S-PKIVKD 105 (453)
Q Consensus 28 ~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~-~-~~~~~~ 105 (453)
-+|+|++-.|.---|.-++..- -+++ .++++++|.+...|+.-+.+-.||+.+.-....+.+=. . ....+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~----~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL----FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeeccc----cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 4688999999888888333332 3444 67999999999999544446667777664433222222 2 258999
Q ss_pred HHHHHHHHHHHhcCc-ceEE--EeccCcchh
Q 012937 106 FGDYADLCFKEFGDR-VKHW--ITLNEPETV 133 (453)
Q Consensus 106 f~~ya~~~~~~~~~~-v~~w--~t~NEp~~~ 133 (453)
++.+++.|+.++|-+ |.-| ..+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999965 4444 678999965
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=86.02 E-value=2.8 Score=38.16 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=46.0
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccc---------cCCCCCCCCC--hhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRIL---------PHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~---------p~~~~~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
...+....+-++-+++||++++-++--+.... |... -.++ ....+-++++|++|+++||++|+++.
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~--~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY--KQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc--CCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34567778888999999999998875443332 1110 1122 12345588999999999999999874
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=85.76 E-value=5.9 Score=39.47 Aligned_cols=88 Identities=19% Similarity=0.402 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHcCCCEEEec-c--cccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhh
Q 012937 18 YFRYKEDIALVKQVGFDSIRFS-I--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~s-i--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 94 (453)
..||.+-.++++++|+|++-+. + .-..+ ..+.++-+.++-+.++..||++.+++. |..|.-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L----------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL----------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG----------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc----------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 4688999999999999998765 2 22222 223466788999999999999999986 7778764
Q ss_pred CCC-----CChhhHHHHHHHHHHHHHHhcCc
Q 012937 95 GGF-----LSPKIVKDFGDYADLCFKEFGDR 120 (453)
Q Consensus 95 ggw-----~~~~~~~~f~~ya~~~~~~~~~~ 120 (453)
||. +++++..++.+=++.+.++..|-
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPDf 151 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPDF 151 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT-
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 554 56899999999999999998763
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=83.02 E-value=8.6 Score=33.65 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEEEeccc--ccc-cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc-C------CCchhhhh
Q 012937 23 EDIALVKQVGFDSIRFSIS--WSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-W------DTPQALED 92 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si~--W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~------~~P~~l~~ 92 (453)
+=++.||++|+|++-+... +.- ..|...-.-.+..+ -+...++|++|+++||++++=+-. | ..|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 3478999999999999443 211 12332100112233 477899999999999999985432 2 46888763
Q ss_pred hhC------------CCC----ChhhHHHHHHHHHHHHHHh
Q 012937 93 EYG------------GFL----SPKIVKDFGDYADLCFKEF 117 (453)
Q Consensus 93 ~~g------------gw~----~~~~~~~f~~ya~~~~~~~ 117 (453)
... ||. |....+...+-.+.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 211 242 3445566666666666666
No 49
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=78.40 E-value=3.8 Score=41.27 Aligned_cols=83 Identities=13% Similarity=0.310 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH--cCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCe-----EEEEeccC
Q 012937 322 IRELLLYLKKK--YNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDV-----RGYFAWSF 394 (453)
Q Consensus 322 l~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V-----~GY~~WSl 394 (453)
+.+.+...-++ +++.+|+|||.|++..+.. ... +.=-+.+.+.+.+.+.+ |.+- .-+++-++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~----~a~------~~nA~~~~~nl~~~~~~-gt~~~~~~~~~~y~F~~ 280 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP----GAT------PENAQAYNQNLIKHVLK-GTPLRPGNGIDVYIFEA 280 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST----TCS------HHHHHHHHHHHHHHCCG-BBSSSBSS---EEES-S
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC----CCC------cchhHHHHHHHHHHHhC-CCcccCCCCCeEEEEEE
Confidence 44444555444 4466799999999987631 001 12224455555555656 6654 34677888
Q ss_pred cccccccCC--CcceeeeEEEeCC
Q 012937 395 LDNYEWEYG--YTSRFGIIYVDYK 416 (453)
Q Consensus 395 ~Dn~EW~~G--y~~rfGL~~VD~~ 416 (453)
.|- .|..| .++.|||++-|.+
T Consensus 281 FdE-~~K~~~~~E~~wGlf~~d~~ 303 (310)
T PF00332_consen 281 FDE-NWKPGPEVERHWGLFYPDGT 303 (310)
T ss_dssp B---TTSSSSGGGGG--SB-TTSS
T ss_pred ecC-cCCCCCcccceeeeECCCCC
Confidence 876 56555 5889999876653
No 50
>PLN02361 alpha-amylase
Probab=76.22 E-value=7 Score=40.80 Aligned_cols=67 Identities=10% Similarity=0.280 Sum_probs=46.5
Q ss_pred ccccchHHHHHHHHHcCCCEEEecccccccccCCCCC---CCCCh--hHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNIS---GGVNQ--QGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 16 d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~---g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
.+|....+-++-|++||++++=++=.....-+.|.-. ..+|. ...+=++++|++|.++||++|+.+.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 3788899999999999999998875443333332100 01111 1234588999999999999999753
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=72.90 E-value=19 Score=36.13 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=66.8
Q ss_pred ccchHHHHHHHHHcCCCEEEecccc-------cccccCCC-CCCCC-ChhHHHHHHHHHHHHHHCCCeEEEec----c--
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISW-------SRILPHGN-ISGGV-NQQGVDFYNNLINELISNGLTPFVTL----F-- 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W-------~ri~p~~~-~~g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL----~-- 82 (453)
-...++-++.|+++|+|++=+.+.+ |.++|... .+|.. ...|.+.+..+|+++.++||++..-+ -
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456788899999999988776644 34444320 00111 11256778899999999999998654 1
Q ss_pred ---c--CCCchhhhhh-------h----C--CCCC---hhhHHHHHHHHHHHHHHhc
Q 012937 83 ---H--WDTPQALEDE-------Y----G--GFLS---PKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 83 ---H--~~~P~~l~~~-------~----g--gw~~---~~~~~~f~~ya~~~~~~~~ 118 (453)
| -..|.|+... + | .|+| |++.+...+-++.|+++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1245664311 1 1 2565 5899999999999999994
No 52
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.60 E-value=22 Score=38.72 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHcCCCEEEec-c-------cccc-----cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 18 YFRYKEDIALVKQVGFDSIRFS-I-------SWSR-----ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~s-i-------~W~r-----i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+.-..+-++-||+||++++=+. | .|.- ..|++. -|. .+=+++||++|.++||++|+++.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YGG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 3444566899999999999776 2 1210 111111 132 34588999999999999999854
No 53
>PLN00196 alpha-amylase; Provisional
Probab=69.59 E-value=10 Score=39.94 Aligned_cols=65 Identities=9% Similarity=0.182 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCC---CCCC---hhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNIS---GGVN---QQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~---g~~n---~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
+|....+.++-|++||++++=++=.....-+.|.-. -.+| ....+=++++|+++.++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466678999999999999999885444332222100 1122 1123448899999999999999984
No 54
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.45 E-value=14 Score=36.62 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=63.1
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCC
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~ 99 (453)
+-+.|++++++.|++.+++.++=|...-... -+.--++.++-..++|..++++|+++.+++-+|+.|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~-~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQ-LRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 4467899999999999999996665544321 1333467889999999999999999999998876653
Q ss_pred hhhHHHHHHHHHHHHH
Q 012937 100 PKIVKDFGDYADLCFK 115 (453)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (453)
+..++.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1225677777777654
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.18 E-value=34 Score=34.09 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=68.9
Q ss_pred chHHHHHHHHHcC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC---Cchhhhhh-
Q 012937 20 RYKEDIALVKQVG--FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALEDE- 93 (453)
Q Consensus 20 r~~eDi~l~~~lG--~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l~~~- 93 (453)
...+-++.+++.| ++++=+.+.|.+-.-.+ +-.+|++-.---+.+|++|+++|+++++.+.-+. .|..-+-+
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~--~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~ 102 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWC--DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcce--eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHH
Confidence 3567789999999 55677778887533211 1355655555578999999999999988765332 22211100
Q ss_pred --------------------hCC---CCChhhHHHHHHHHHHHHHHhcCcce-EEEeccCcc
Q 012937 94 --------------------YGG---FLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPE 131 (453)
Q Consensus 94 --------------------~gg---w~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 131 (453)
.++ +.||++.+.|.+..+.+.+ .| |+ +|+=+|||.
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 103 KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 011 5688889888887776554 44 44 556689973
No 56
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=67.55 E-value=13 Score=36.09 Aligned_cols=59 Identities=15% Similarity=0.364 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCC---------CCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISG---------GVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g---------~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
..+-|+-||+||++++-++=-+. .|.+. .| .......+=+++||++|.++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 35668899999999999984433 11110 01 01223456688999999999999999875
No 57
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=66.78 E-value=17 Score=41.18 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=65.4
Q ss_pred cCCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc---CCCchhhhhh---------h---
Q 012937 31 VGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQALEDE---------Y--- 94 (453)
Q Consensus 31 lG~~~~R~si~-W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H---~~~P~~l~~~---------~--- 94 (453)
+-++++++.+. |.+ .-+ .-++|..-.---+.||+.|++.||+.++-+.. -|.|+.-+.. .
T Consensus 294 IP~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 45779999995 876 222 13455555555569999999999999998763 2333321110 0
Q ss_pred ---------C---CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhccc
Q 012937 95 ---------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC 136 (453)
Q Consensus 95 ---------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 136 (453)
+ -++||+..++|.+....-...+| -.-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 1 16789999999873333233333 25788999999977544
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.42 E-value=18 Score=35.11 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=56.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCCh
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (453)
-.+|++.+.+.|++.+|+.++.|.+.-... -+.-.++.++-..++++.++++|+++.+++- . .+..
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~-----~------~~~~-- 136 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHK-LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE-----D------ASRA-- 136 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEeec-----c------CCCC--
Confidence 378999999999999999998887643321 1333456788899999999999998876542 1 2222
Q ss_pred hhHHHHHHHHHHHHH
Q 012937 101 KIVKDFGDYADLCFK 115 (453)
Q Consensus 101 ~~~~~f~~ya~~~~~ 115 (453)
..+...+.++.+.+
T Consensus 137 -~~~~~~~~~~~~~~ 150 (259)
T cd07939 137 -DPDFLIEFAEVAQE 150 (259)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35666666666644
No 59
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.39 E-value=17 Score=37.14 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=63.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc-CCCchhhhhhhCCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~ggw~~ 99 (453)
-.+|++++.+.|++.+.+.++=|...-... -+.--++.++.+.++|+.++++|+++.+++.. |..|. .|-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n-~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r-- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSN-INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP-- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC--
Confidence 589999999999999999987776655432 13445778999999999999999999877753 45442 222
Q ss_pred hhhHHHHHHHHHHHHH
Q 012937 100 PKIVKDFGDYADLCFK 115 (453)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (453)
..++.+.++++.+.+
T Consensus 194 -~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 -VPPSKVAYVAKELYD 208 (347)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 337777788887654
No 60
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.32 E-value=45 Score=33.23 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=71.9
Q ss_pred hHHHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc---hh------
Q 012937 21 YKEDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP---QA------ 89 (453)
Q Consensus 21 ~~eDi~l~~~lG~--~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P---~~------ 89 (453)
..+-++.+++.|+ +.+=+.+.|..-. + +-++|.+-..--.++|++|+++|+++++.+.=+-.+ ..
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g--~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~ 107 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--G--DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEK 107 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--C--ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhC
Confidence 4566788899995 4777777785432 2 235665555557899999999999999876532111 11
Q ss_pred ---hhhhhC----------C------CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcc
Q 012937 90 ---LEDEYG----------G------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (453)
Q Consensus 90 ---l~~~~g----------g------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (453)
+.+..| | +.||++.+.|.+..+.+....|= --+|+=+|||.
T Consensus 108 g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 108 GYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 111101 1 67899999999998888877753 45678899996
No 61
>PRK12313 glycogen branching enzyme; Provisional
Probab=65.99 E-value=32 Score=38.14 Aligned_cols=97 Identities=16% Similarity=0.337 Sum_probs=61.2
Q ss_pred ccchHHHH-HHHHHcCCCEEEec-c-------ccc-------ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 18 YFRYKEDI-ALVKQVGFDSIRFS-I-------SWS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 18 y~r~~eDi-~l~~~lG~~~~R~s-i-------~W~-------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
|.-..+.+ +-||+||++++=+. | +|. .|.|.= |. .+=++++|++|.++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 44455674 99999999999765 2 221 122221 33 3448899999999999999984
Q ss_pred c--cCCCch----hhh--------hh----hCCC-------CChhhHHHHHHHHHHHHHHhcCcceEE
Q 012937 82 F--HWDTPQ----ALE--------DE----YGGF-------LSPKIVKDFGDYADLCFKEFGDRVKHW 124 (453)
Q Consensus 82 ~--H~~~P~----~l~--------~~----~ggw-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (453)
. |..... ++. +. +.+| .++++.+.+.+-++.-+++|+ |+.|
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~ 306 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGL 306 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 4 543111 110 00 0123 367888888888888888875 4444
No 62
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.18 E-value=20 Score=34.42 Aligned_cols=80 Identities=15% Similarity=-0.003 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChh
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 101 (453)
+++++++++.|++.+|++++-+...-... .+.=.+..++...+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 89999999999999999998774221110 011123356778899999999999999998643333 13
Q ss_pred hHHHHHHHHHHHH
Q 012937 102 IVKDFGDYADLCF 114 (453)
Q Consensus 102 ~~~~f~~ya~~~~ 114 (453)
..+.+.++++.+.
T Consensus 144 ~~~~l~~~~~~~~ 156 (265)
T cd03174 144 DPEYVLEVAKALE 156 (265)
T ss_pred CHHHHHHHHHHHH
Confidence 3555666666655
No 63
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=64.90 E-value=34 Score=34.18 Aligned_cols=85 Identities=11% Similarity=0.064 Sum_probs=52.3
Q ss_pred HHHHHcCCCEEEecc--cccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhH
Q 012937 26 ALVKQVGFDSIRFSI--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIV 103 (453)
Q Consensus 26 ~l~~~lG~~~~R~si--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 103 (453)
+.+++.|++++-++. .-....|.- .|.............|.+|+++|++++|.+--|.-.... .+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccH
Confidence 567889999888774 222233321 111110012345678999999999999987443321100 134678
Q ss_pred HHHHHHHHHHHHHhcC
Q 012937 104 KDFGDYADLCFKEFGD 119 (453)
Q Consensus 104 ~~f~~ya~~~~~~~~~ 119 (453)
+.|++....+.++|+=
T Consensus 90 ~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 90 DQLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888888863
No 64
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.71 E-value=41 Score=34.21 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=67.8
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHH--HHHHHHHHHCCCeEEEecccCCCch--------
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFY--NNLINELISNGLTPFVTLFHWDTPQ-------- 88 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y--~~~i~~l~~~Gi~p~vtL~H~~~P~-------- 88 (453)
.++-++.+++.|+. ++=+.+.|..- .+ +-++|.+...-- +++|++|+++|++.++.+.-+-.+.
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~ 101 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR--RR--DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPP 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC--cc--ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHH
Confidence 45667788888876 44455566532 12 123444333334 7999999999999999876543332
Q ss_pred hhhh-h------------h--------C---CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 89 ALED-E------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 89 ~l~~-~------------~--------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
+-.. + + + -++|++..++|.+..+.+...+|- .-+|+=+|||..+
T Consensus 102 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 102 YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCchH
Confidence 1100 0 0 1 267888889888877776665542 4567889999643
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=64.26 E-value=35 Score=38.53 Aligned_cols=97 Identities=14% Similarity=0.238 Sum_probs=60.4
Q ss_pred ccchHHHH-HHHHHcCCCEEEeccc--------cc-------ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 18 YFRYKEDI-ALVKQVGFDSIRFSIS--------WS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 18 y~r~~eDi-~l~~~lG~~~~R~si~--------W~-------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
|.-..+.+ +-||+||++++=+.=- |. .|.|.= |. .+=.+++|++|.++||++|+++
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 33344553 7789999999977621 21 122221 33 3447899999999999999985
Q ss_pred c--cCCC-----------chhhhh-----hhCC-------CCChhhHHHHHHHHHHHHHHhcCcceEE
Q 012937 82 F--HWDT-----------PQALED-----EYGG-------FLSPKIVKDFGDYADLCFKEFGDRVKHW 124 (453)
Q Consensus 82 ~--H~~~-----------P~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (453)
. |+.. |.+... .+.. +.++++.+.+.+-++.-+++|+ |+.|
T Consensus 336 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~ 401 (726)
T PRK05402 336 VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGL 401 (726)
T ss_pred CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 3 5421 111110 0112 3467888888888888888875 5555
No 66
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=64.22 E-value=21 Score=34.46 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHCCCeEEEeccc--------------CCCchhhhhh----------------hCC----CCChh---hH
Q 012937 61 DFYNNLINELISNGLTPFVTLFH--------------WDTPQALEDE----------------YGG----FLSPK---IV 103 (453)
Q Consensus 61 ~~y~~~i~~l~~~Gi~p~vtL~H--------------~~~P~~l~~~----------------~gg----w~~~~---~~ 103 (453)
+.++.+|+.-+++|.++|+||-= ...|.|-..+ .+| -.+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 56899999999999999999852 1122211000 011 11232 11
Q ss_pred HHHHHHHHHHHHHhcCc-----ceEEEeccCcchhcccCcccCcCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 012937 104 KDFGDYADLCFKEFGDR-----VKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSHATA 178 (453)
Q Consensus 104 ~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a 178 (453)
..-.+++..+..+||.. |++|..=|||.+-... + ...||-+ ..+.-+....++.|+|
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T-H-~dVHP~~----------------~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST-H-RDVHPEP----------------VTYDELRDRSIEYAKA 165 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH-T-TTT--S-------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc-c-cccCCCC----------------CCHHHHHHHHHHHHHH
Confidence 23345577777888776 9999999999865311 0 1223322 2234455566667777
Q ss_pred HHHHHHHhhcCCCceE-EEE
Q 012937 179 VKLYRQNYQASQNGLI-GIT 197 (453)
Q Consensus 179 ~~~~r~~~~~~~~g~v-Gi~ 197 (453)
+|. .. |+++| |-+
T Consensus 166 iK~---~D---P~a~v~GP~ 179 (239)
T PF12891_consen 166 IKA---AD---PDAKVFGPV 179 (239)
T ss_dssp HHH---H----TTSEEEEEE
T ss_pred HHh---hC---CCCeEeech
Confidence 554 43 67764 555
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.04 E-value=21 Score=35.51 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=63.4
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc-CCCchhhhhhhCCCC
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFL 98 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~ggw~ 98 (453)
+-.+|+++..+.|++.+++.++=|...-... -+.--++.++...++|+..+++|+++.+++.. |..|. .|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n-~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKN-INCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC
Confidence 4689999999999999999987665532221 13344567889999999999999999887764 44542 3333
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 012937 99 SPKIVKDFGDYADLCFKE 116 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~ 116 (453)
..+.+.++++.+.+.
T Consensus 153 ---~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 ---PPEAVADVAERLFAL 167 (287)
T ss_pred ---CHHHHHHHHHHHHHc
Confidence 367788888887653
No 68
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=63.70 E-value=30 Score=34.02 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=40.2
Q ss_pred cccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 12 DVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 12 ~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
|-+|-+=..|..|+++++.-+. .+|.= | -|... ...+..++.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-------------~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-------------G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-------------e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 4468888889999999999886 55531 2 33333 45899999999999998875
No 69
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.28 E-value=47 Score=33.37 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=67.0
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCC--CCCCChhHHHHHHHHHHHHHHCCCeEEEecccC---CCchhhhhh
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNI--SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALEDE 93 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~ 93 (453)
..+-++.+++.|+. ++=+.+.|......+.. +-++|.+-..--+++|++|+++|++.++.+.-+ +.|..-+-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 45556777777765 66666678543221100 123444444445799999999999999987644 333321100
Q ss_pred h----------------------C---CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 94 Y----------------------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 94 ~----------------------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
. + -++||+..++|.+..+.+ ...| ---+|+=+|||...
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 1 256889999988877765 2233 12457889999754
No 70
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=62.73 E-value=46 Score=33.81 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccC-CCchhhhhh--hCC
Q 012937 22 KEDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DTPQALEDE--YGG 96 (453)
Q Consensus 22 ~eDi~l~~~lG~--~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~P~~l~~~--~gg 96 (453)
++-++.+++.++ +++=+.|.|..-. + .-++|.+...--++++++|++.|++.++.+.-+ ..-...... +--
T Consensus 27 ~~v~~~~r~~~IP~D~i~lDidy~~~~--~--~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pD 102 (332)
T cd06601 27 EEVVEGYRDNNIPLDGLHVDVDFQDNY--R--TFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPD 102 (332)
T ss_pred HHHHHHHHHcCCCCceEEEcCchhcCC--C--ceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeC
Confidence 344455565554 5677777775321 2 234555444445789999999999988765411 100000000 113
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhccc
Q 012937 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC 136 (453)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 136 (453)
|.|+++.++|.+..+.+.+ .|= .-+|+=+|||.+++..
T Consensus 103 ftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 103 LGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 6788888887776554433 232 3488999999977543
No 71
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=62.26 E-value=22 Score=36.48 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
.++|++.+.+.|++.+|++++-|.+.-... -+.-.++.++-..+.|..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYK-LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 589999999999999999988777654321 0233455788899999999999999888764
No 72
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=62.03 E-value=45 Score=33.84 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=68.8
Q ss_pred hHHHHHHHHHcCCCE--EEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC-----chhhhhh
Q 012937 21 YKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE 93 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~--~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~-----P~~l~~~ 93 (453)
..+-++.+++.|+.. +=+.+.|..- .+ .-++|++-..--+++|++|+++|++.++.++-+-. |..-.-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~ 101 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTDG--KR--YFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAK 101 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhCC--CC--ceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHH
Confidence 556677888877764 4444444321 01 12344443333568999999999999988775432 2211100
Q ss_pred ---------hC---------------CCCChhhHHHHHHHHHHHHHHhc-CcceEEEeccCcchhc
Q 012937 94 ---------YG---------------GFLSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVG 134 (453)
Q Consensus 94 ---------~g---------------gw~~~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~~~~ 134 (453)
.| -+.||++.++|.+..+.+....+ .-+-+|+=+|||.++.
T Consensus 102 ~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 102 DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 01 26789999999988887765432 2357889999998653
No 73
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.90 E-value=39 Score=35.94 Aligned_cols=113 Identities=18% Similarity=0.298 Sum_probs=71.8
Q ss_pred ccchHHHHHHHHHcCCCEEEec----ccccccccCC--------------------------CCCCCCChhH----HHHH
Q 012937 18 YFRYKEDIALVKQVGFDSIRFS----ISWSRILPHG--------------------------NISGGVNQQG----VDFY 63 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~s----i~W~ri~p~~--------------------------~~~g~~n~~~----~~~y 63 (453)
|.+|+..|+.|+=.|+|..=.. +-|.+|+-.- .-.|....+. +--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 5789999999999999965433 3455554331 0013333222 2223
Q ss_pred HHHHHHHHHCCCeEEEecccCCCchhhhhh--------hCCCC---------------ChhhHHHHHHHHHHHHHHhcCc
Q 012937 64 NNLINELISNGLTPFVTLFHWDTPQALEDE--------YGGFL---------------SPKIVKDFGDYADLCFKEFGDR 120 (453)
Q Consensus 64 ~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~--------~ggw~---------------~~~~~~~f~~ya~~~~~~~~~~ 120 (453)
+++|+.+++-||+|++.-+---.|..|..- .+-|. .|-+++-=..|.+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 689999999999999987766678777542 12232 2335555566778888999963
Q ss_pred ceEE--EeccCc
Q 012937 121 VKHW--ITLNEP 130 (453)
Q Consensus 121 v~~w--~t~NEp 130 (453)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2222 388984
No 74
>PLN02784 alpha-amylase
Probab=61.76 E-value=21 Score=40.72 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=46.5
Q ss_pred ccccchHHHHHHHHHcCCCEEEecccccccccCCCCC---CCCCh--hHHHHHHHHHHHHHHCCCeEEEec
Q 012937 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNIS---GGVNQ--QGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 16 d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~---g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
.+|....+.++-|++||++++=++=......+.|.-. ..+|. ...+=++.+|++|.++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678889999999999999998875444333333100 11121 123458899999999999999984
No 75
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.44 E-value=18 Score=40.41 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHHcCCCEEEe----ccccccccc------------------CCCCCCCCCh---hHHHHHHHHHHHHHHCCCeEEE
Q 012937 25 IALVKQVGFDSIRF----SISWSRILP------------------HGNISGGVNQ---QGVDFYNNLINELISNGLTPFV 79 (453)
Q Consensus 25 i~l~~~lG~~~~R~----si~W~ri~p------------------~~~~~g~~n~---~~~~~y~~~i~~l~~~Gi~p~v 79 (453)
|+-+|+||++++.+ ++.+.+..+ ++ ....|. ..+.=+++||++|.++||++|+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~--~Yss~p~p~~~i~EfK~mV~~lHkaGI~VIL 283 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEG--RYASNPEPATRIKEFKDMVKALHKAGIEVIL 283 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCc--cccCCCCcchHHHHHHHHHHHHHHcCCEEEE
Confidence 89999999999985 334444432 22 111233 2577799999999999999999
Q ss_pred ecc
Q 012937 80 TLF 82 (453)
Q Consensus 80 tL~ 82 (453)
++.
T Consensus 284 DVV 286 (697)
T COG1523 284 DVV 286 (697)
T ss_pred EEe
Confidence 854
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=60.88 E-value=55 Score=32.88 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=68.2
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC-----chhhhh-
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALED- 92 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~-----P~~l~~- 92 (453)
..+-++.+++.++. ++=+.+.|..- .+ .-.+|.+-..--.++|++|+++|++.++.+.-+-. |.....
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~ 101 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMDS--YR--LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGM 101 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhCC--CC--ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHH
Confidence 44556777777765 55555666532 22 13556555555679999999999998887653321 221110
Q ss_pred -h-----------------hC-----CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 93 -E-----------------YG-----GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 93 -~-----------------~g-----gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
+ .| -|.||+..++|.+..+.+....|- .-+|+=+|||..+
T Consensus 102 ~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 102 DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred HCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 0 01 267899999998888777655542 3577889999643
No 77
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=60.37 E-value=16 Score=38.96 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=43.4
Q ss_pred ccccchHHHHHHHHHcCCCEEEeccccccc--------ccCCCC-------CCCCCh--hHHHHHHHHHHHHHHCCCeEE
Q 012937 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRI--------LPHGNI-------SGGVNQ--QGVDFYNNLINELISNGLTPF 78 (453)
Q Consensus 16 d~y~r~~eDi~l~~~lG~~~~R~si~W~ri--------~p~~~~-------~g~~n~--~~~~~y~~~i~~l~~~Gi~p~ 78 (453)
+.|.-..+-++-|++||++++=++=...-. -|.-.. .|.+|. -..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556778899999999999887433221 111100 001221 134458899999999999999
Q ss_pred Eecc
Q 012937 79 VTLF 82 (453)
Q Consensus 79 vtL~ 82 (453)
+++.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9854
No 78
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.92 E-value=57 Score=32.77 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=63.0
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC---Cchhhhh-h-
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALED-E- 93 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l~~-~- 93 (453)
.++-++.+++.|+. ++=+.+.|-. ..+--.-++|.+-..--.++|++|+++||++++.+.-+- .+.+-.- +
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~ 103 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEK 103 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhc--CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHC
Confidence 45566778877665 4444444421 111001234555555567999999999999988764321 1211000 0
Q ss_pred -------h-----------CC---CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhc
Q 012937 94 -------Y-----------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (453)
Q Consensus 94 -------~-----------gg---w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~ 134 (453)
. ++ |.||+..++|.+..+..+...|= --+|+=+|||....
T Consensus 104 g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 104 GYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred CEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 0 12 56788888776655544444432 45778999998653
No 79
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.63 E-value=16 Score=35.89 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
-.+|++.+.+.|++.+|+.++=|...-... -+.--++.++...++|..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 377999999999999999987665443321 1222356789999999999999999998874
No 80
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=58.82 E-value=17 Score=39.45 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=42.7
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccC-CCC-C--CCCC--hhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPH-GNI-S--GGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~-~~~-~--g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
..-+.-..+-++-+++||++++=++=-...-.-. |.. . -.+| ....+=++++|+++.++||++|+++.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445556778899999999998776322211000 100 0 0111 12345588999999999999999864
No 81
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.55 E-value=79 Score=31.59 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=56.9
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC---Cchhh----------hhhhCCCC---------Ch
Q 012937 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQAL----------EDEYGGFL---------SP 100 (453)
Q Consensus 43 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l----------~~~~ggw~---------~~ 100 (453)
.+..|.. .+-++++-++.++++++.+.++|-..++=|.|-. .|... ... .... -.
T Consensus 61 ~~~~~~~--~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~mt~~ei~ 137 (327)
T cd02803 61 GKGYPGQ--LGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSP-GGGEPPREMTKEEIE 137 (327)
T ss_pred ccCCCCC--cCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCC-CCCCCCCcCCHHHHH
Confidence 3445544 3678999999999999999999999999999932 11100 000 0001 13
Q ss_pred hhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcC
Q 012937 101 KIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTK 143 (453)
Q Consensus 101 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~ 143 (453)
++++.|++-|+.+.+. | |....+.+..||+...|
T Consensus 138 ~~i~~~~~aA~~a~~a-G--------fDgveih~~~gyL~~qF 171 (327)
T cd02803 138 QIIEDFAAAARRAKEA-G--------FDGVEIHGAHGYLLSQF 171 (327)
T ss_pred HHHHHHHHHHHHHHHc-C--------CCEEEEcchhhhHHHHh
Confidence 5788888888777653 3 34444556677876543
No 82
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=58.26 E-value=22 Score=36.52 Aligned_cols=96 Identities=11% Similarity=0.196 Sum_probs=56.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCchhhhhhhCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~ggw~ 98 (453)
=+|.++.|+++|++.+-++| ..+-++-- .-|+.. ..+-+.+.|+.+++.||..+ ++|. +++|..
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPgq--------- 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPNQ--------- 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCCC---------
Confidence 46789999999999544444 44433210 002211 23457789999999999744 5543 566642
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
+.+.|.+-.+.+.+.=-++|..+...-+|+..
T Consensus 164 ---t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 164 ---TLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 24556666666554333556555444577644
No 83
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=57.60 E-value=41 Score=35.62 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=64.7
Q ss_pred hHHHHHHHHHcCCCEEEecc-cccccccCCCCCCCCChhHHHHHHHHHHHHHHCC-CeEEEecccCCCchhhhhhhCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSI-SWSRILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
=+|.+++|+++|+|.+.++| |-+.-.-.. -|+.. ..+-..+.|..+++.| +.+.++|. +++|..
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~--lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPgq--------- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR--AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPGQ--------- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH--hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCCC---------
Confidence 46889999999999888887 332211111 02221 1244667899999999 66766765 566642
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCC
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA 144 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~ 144 (453)
+.+.|.+=.+.+.+-=-++|..+...-+|......-+..|.++
T Consensus 228 ---T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 ---TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2344544455555443467888887778876433333345443
No 84
>PRK14706 glycogen branching enzyme; Provisional
Probab=56.57 E-value=65 Score=35.85 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=52.7
Q ss_pred HHHHHcCCCEEEec-c-------cccccccCCCCCCCCC--hhHHHHHHHHHHHHHHCCCeEEEecc--cCC--------
Q 012937 26 ALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF--HWD-------- 85 (453)
Q Consensus 26 ~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~-------- 85 (453)
+-+|+||++++-+. | +|.- .|... -.++ ....+=.+.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~--~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGY--YAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-Ccccc--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 56899999998765 2 1211 00000 0000 11234478999999999999999854 431
Q ss_pred ---Cchhh-hhhhCC----C-------CChhhHHHHHHHHHHHHHHhc
Q 012937 86 ---TPQAL-EDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 86 ---~P~~l-~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~~ 118 (453)
.|.+. .+...| | .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 22211 110011 2 257888888888888888884
No 85
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.51 E-value=26 Score=39.55 Aligned_cols=94 Identities=13% Similarity=0.224 Sum_probs=57.8
Q ss_pred cccchH-HHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEe
Q 012937 17 FYFRYK-EDIALVKQVGFDSIRFSISWS---------------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (453)
Q Consensus 17 ~y~r~~-eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 80 (453)
.|.-.. +-+.-+|+||++++=+.=-.. .+.|.- |. .+-++++|++|.++||++|++
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 344433 348999999999998763221 111111 32 244789999999999999998
Q ss_pred ccc--CC-------------CchhhhhhhCC----C-------CChhhHHHHHHHHHHHHHHhc
Q 012937 81 LFH--WD-------------TPQALEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 81 L~H--~~-------------~P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~~ 118 (453)
+.+ .. .+.|++....| | .++++...+.+-++.-+++|+
T Consensus 320 vV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 320 VVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred eccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 764 21 12333211012 2 245677777777787777773
No 86
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=56.44 E-value=66 Score=35.55 Aligned_cols=101 Identities=13% Similarity=0.161 Sum_probs=60.9
Q ss_pred chHHHH-HHHHHcCCCEEEec-cccccc------ccCCCCCCCCC--hhHHHHHHHHHHHHHHCCCeEEEecc--cCC--
Q 012937 20 RYKEDI-ALVKQVGFDSIRFS-ISWSRI------LPHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF--HWD-- 85 (453)
Q Consensus 20 r~~eDi-~l~~~lG~~~~R~s-i~W~ri------~p~~~~~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~-- 85 (453)
-..+.+ +-+|+||++++=+. |..+.- .|... -.++ ....+=.+++|++|.++||++|+.+. |..
T Consensus 157 ~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 157 ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--YAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 344564 88999999999884 533211 01100 0011 11123478999999999999999855 532
Q ss_pred ---------Cchhhhhh-----hCCC-------CChhhHHHHHHHHHHHHHHhcCcceEE
Q 012937 86 ---------TPQALEDE-----YGGF-------LSPKIVKDFGDYADLCFKEFGDRVKHW 124 (453)
Q Consensus 86 ---------~P~~l~~~-----~ggw-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (453)
.|.+.... ...| .++++.+.+.+-++..+++|+ |+.|
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~--iDG~ 292 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH--IDGL 292 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 12221110 0112 357888999999999999885 4444
No 87
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=56.07 E-value=44 Score=35.68 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=41.7
Q ss_pred ccchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 18 y~r~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
|..|.+| ++...+.|++.+|+.++-+.+ +-....|+..+++|+.+..++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5567888 899999999999999866542 335577888888998888777653335
No 88
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=55.08 E-value=44 Score=36.80 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=34.8
Q ss_pred ccchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 18 y~r~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+..+++|....+++.+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 5566666 999999999999999655433 23445666666667665555543
No 89
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=54.69 E-value=19 Score=39.15 Aligned_cols=66 Identities=14% Similarity=0.301 Sum_probs=43.0
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccC---CCC--C-CCCC--hhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPH---GNI--S-GGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~---~~~--~-g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
..-+.-..+.++-+++||++++=++=-+.. |. |.- + -.+| ....+-++++|+++.++||++|+++.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344555678899999999999987633211 11 100 0 0011 11345588999999999999999864
No 90
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.54 E-value=1e+02 Score=30.86 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=65.0
Q ss_pred hHHHHHHHHHcCCCE--EEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC---chhhhhhh-
Q 012937 21 YKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQALEDEY- 94 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~--~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~---P~~l~~~~- 94 (453)
..+-++.+++.|+.. +=+.+.|........-.-.+|.+...--++||++|+++|++.++.+.-+-. |..-+-..
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 455667888888764 433445654311000002344444344669999999999999987764422 22110000
Q ss_pred --------C----------------CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcch
Q 012937 95 --------G----------------GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (453)
Q Consensus 95 --------g----------------gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (453)
| -++||+..+.|.+..+..+...|- .-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 1 146888888888777555555442 357788999964
No 91
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.59 E-value=68 Score=32.22 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCC-EEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCC
Q 012937 22 KEDIALVKQVGFD-SIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 22 ~eDi~l~~~lG~~-~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
+|.+++|+++|++ .+=+++ +-+ ++.-..- .-..+ .+-+.+.++.++++||.+.+.+. +++|.. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i-nKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~~--------s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSI-NKGST---FEDFIRAAELARKYGAGVKAYLL-FKPPFL--------S 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh-CCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCCC--------C
Confidence 7889999999998 466655 211 1110000 01122 34577999999999999776654 344521 1
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCCC
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAP 145 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~P 145 (453)
..+.++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 13567777777777764 45778877766666654434456676655
No 92
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=53.14 E-value=48 Score=35.34 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=43.3
Q ss_pred ccchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 18 y~r~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
|..|.+| ++++++.|++.+|+.-.. | .++-....|+.+++.|..+.+++.|=+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------n--d~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------N--DPRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------C--CHHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 6677888 899999999999987533 2 13446688899999999988888876666
No 93
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=53.09 E-value=77 Score=31.34 Aligned_cols=99 Identities=11% Similarity=0.157 Sum_probs=61.9
Q ss_pred CccccchHHHHHHHHHcCCCEEEecccccccccCCC--CCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC------C
Q 012937 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGN--ISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD------T 86 (453)
Q Consensus 15 ~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~--~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~------~ 86 (453)
.-.+..+++-|+..+++|+..+=+.--|+.-.+... ....... ....++++..+++|+.+++-.+|-+ +
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~ 104 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGGNVANL 104 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTTBHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcchhhHhH
Confidence 446777888899999999999999999987332210 0011112 2367999999999999999988754 2
Q ss_pred chhhhhh------hC------CC---CChhhHHHHHHHHHHHHHH
Q 012937 87 PQALEDE------YG------GF---LSPKIVKDFGDYADLCFKE 116 (453)
Q Consensus 87 P~~l~~~------~g------gw---~~~~~~~~f~~ya~~~~~~ 116 (453)
=..+.+. .| +| .+...+..+.+.++.++++
T Consensus 105 ~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 105 EKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1112111 12 23 3456788888888887754
No 94
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.48 E-value=85 Score=30.84 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=48.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCCh
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (453)
-++|+++..+.|++.+|+++..+. ++...+.++.++++|+++.+++.--+ + .+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PV 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CC
Confidence 588999999999999999875543 34567899999999999887653101 1 22
Q ss_pred hhHHHHHHHHHHHHH
Q 012937 101 KIVKDFGDYADLCFK 115 (453)
Q Consensus 101 ~~~~~f~~ya~~~~~ 115 (453)
...+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (275)
T cd07937 146 HTLEYYVKLAKELED 160 (275)
T ss_pred CCHHHHHHHHHHHHH
Confidence 346667777777654
No 95
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.29 E-value=60 Score=31.78 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChh
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 101 (453)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-. + .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----C
Confidence 4788888899999999987332 356678999999999999999886411 1 2
Q ss_pred hHHHHHHHHHHHHH
Q 012937 102 IVKDFGDYADLCFK 115 (453)
Q Consensus 102 ~~~~f~~ya~~~~~ 115 (453)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 36667778877654
No 96
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=51.84 E-value=45 Score=31.91 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=42.9
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE-ecccCCCc
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-TLFHWDTP 87 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v-tL~H~~~P 87 (453)
+-..+++=++++++||.+.+++...+. |......+.....++...++.+.+.+.||...+ +++|++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345667778999999999998644321 211000112233456678888889999998777 33555554
No 97
>PRK09505 malS alpha-amylase; Reviewed
Probab=51.74 E-value=30 Score=38.74 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccc-----------c----CCCC---CCCCC--hhHHHHHHHHHHHHHHCCCeEEEe
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRIL-----------P----HGNI---SGGVN--QQGVDFYNNLINELISNGLTPFVT 80 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------p----~~~~---~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vt 80 (453)
..+=++-|++||++++=++=-...+. | .|.- -..+| ....+=++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 56678899999999998874333321 1 0000 00112 223456889999999999999998
Q ss_pred cc
Q 012937 81 LF 82 (453)
Q Consensus 81 L~ 82 (453)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 98
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.39 E-value=2.4e+02 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=33.4
Q ss_pred ccccc---CCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 43 SRILP---HGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 43 ~ri~p---~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
++.+| .. .+-++.+-+..++++.+.++++|-..++=|+|
T Consensus 63 ~~~~~~~~~~--~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h 104 (338)
T cd04733 63 HLEEPGIIGN--VVLESGEDLEAFREWAAAAKANGALIWAQLNH 104 (338)
T ss_pred cccCCCcCCC--cccCCHHHHHHHHHHHHHHHhcCCEEEEEccC
Confidence 46666 33 26788899999999999999999999999999
No 99
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=50.68 E-value=50 Score=32.49 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc-CCCchhhhhhhCCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~ggw~~ 99 (453)
-.+|++...+.|++.+++.++=|...-... -+.--++.++...+.+..++++|+++.+++.. |+.|. +|-
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~-~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~-- 145 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKN-INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGE-- 145 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCC--
Confidence 478999999999999999987765433321 13333677889999999999999999988763 55552 222
Q ss_pred hhhHHHHHHHHHHHHH
Q 012937 100 PKIVKDFGDYADLCFK 115 (453)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (453)
-..+.+.++++.+.+
T Consensus 146 -~~~~~~~~~~~~~~~ 160 (274)
T cd07938 146 -VPPERVAEVAERLLD 160 (274)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 246777778877654
No 100
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.22 E-value=45 Score=34.25 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=57.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCCh
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (453)
-++|++.+.+.|++.+|+.++-|.+.-.... +.--++.++-..+.|..++++|+++.+++-. ++..
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~-- 139 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA-- 139 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC--
Confidence 3889999999999999999988765333210 2223567888999999999999998765421 2223
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 012937 101 KIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 101 ~~~~~f~~ya~~~~~~~~ 118 (453)
..+.+.++++.+.+ .|
T Consensus 140 -~~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 140 -DPDFLVELAEVAAE-AG 155 (365)
T ss_pred -CHHHHHHHHHHHHH-cC
Confidence 35667777776554 44
No 101
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=49.45 E-value=47 Score=32.60 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCEEEeccccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEe
Q 012937 21 YKEDIALVKQVGFDSIRFSISWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 80 (453)
-+|.++.||++|++.+-++++-+ .+.+.- .+.. .++.+.+.++.++++||.+.++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i--~~~~---s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNI--ISTH---TYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhc--cCCC---CHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999822 133331 1222 3466778999999999986544
No 102
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=49.26 E-value=25 Score=38.19 Aligned_cols=65 Identities=14% Similarity=0.297 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHcCCCEEEecccccccc-cCCC--CC-CCCCh--hHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWSRIL-PHGN--IS-GGVNQ--QGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~--~~-g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+.-..+-++-+++||++++=++=-.+.-. ..|. .+ -.+|+ ...+=++++|+++.++||++|+++.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 44456678999999999987762211100 0000 00 01222 2245588999999999999999854
No 103
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=48.91 E-value=33 Score=39.43 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHcCCCEEEecc---------------cccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSI---------------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si---------------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+....+-+.-+++||++++=+|= ++.+|.|.- | +.+=++++|++++++||++|+++.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44567888999999999987663 333444442 2 335588999999999999999854
No 104
>PRK14705 glycogen branching enzyme; Provisional
Probab=48.87 E-value=1.2e+02 Score=36.39 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=55.3
Q ss_pred HHHHHHcCCCEEEec-c-------cccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc--cCCC--------
Q 012937 25 IALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDT-------- 86 (453)
Q Consensus 25 i~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~-------- 86 (453)
|+-+|+||++++=+. | +|. -.|.+...-.......+=++.+|++|.++||.+|+++. |+..
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 588999999998765 2 341 11111000000111234478999999999999999854 5421
Q ss_pred ---chhhhhh-----hCC-------CCChhhHHHHHHHHHHHHHHhc
Q 012937 87 ---PQALEDE-----YGG-------FLSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 87 ---P~~l~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~~~ 118 (453)
|.+.+.. +.. +.++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111100 011 3356788888888888888884
No 105
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.66 E-value=54 Score=33.87 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
++|++.+.+.|++.++++++-|.+.-... -+.--++.++-..+.|..+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~-~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHK-LKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999998777643321 133346788889999999999999988874
No 106
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=48.58 E-value=79 Score=32.89 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=61.5
Q ss_pred hHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHHCCCe-EEEecccCCCchhhhhhhCC
Q 012937 21 YKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGG-VNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg 96 (453)
=++.++.|+++|+|.+-+++ +-+ ++...- |+ .+ .+-..+.++.+++.|+. +-++|. +++|..
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPgq------- 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPHQ------- 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCCC-------
Confidence 46889999999999666666 221 111111 11 22 23456789999999998 556765 566642
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcC
Q 012937 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTK 143 (453)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~ 143 (453)
+.+.+.+=++.+.+-=-++|..+...-||......-+..|.+
T Consensus 180 -----t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 180 -----TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -----CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 233444444444443346677776667887554433444443
No 107
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.25 E-value=94 Score=31.50 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=62.9
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhH
Q 012937 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIV 103 (453)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 103 (453)
.++.+|++|.+++.|=+=|. |++ +-.+|..-.++.+++.++|++.||-=++=+.-+|.+.- +. .+++..
T Consensus 112 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~eya 180 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAYA 180 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHHH
Confidence 67899999999999998885 554 35688889999999999999999998888776654332 11 122322
Q ss_pred HHHHHHHHHHHHHhcC---cceEE
Q 012937 104 KDFGDYADLCFKEFGD---RVKHW 124 (453)
Q Consensus 104 ~~f~~ya~~~~~~~~~---~v~~w 124 (453)
...-+.+-..++.|++ .|+.|
T Consensus 181 k~kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 181 KLKPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred hhChHHHHHHHHHhccCCCCCcEE
Confidence 2223334455666665 36655
No 108
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.10 E-value=94 Score=31.43 Aligned_cols=58 Identities=16% Similarity=0.387 Sum_probs=49.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
++.+|++|.+++.|=+=|. |+. +..+|..-.++.+++.++|++.||-=++=+.-++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999998885 555 356899999999999999999999888877665544
No 109
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.09 E-value=45 Score=37.22 Aligned_cols=57 Identities=16% Similarity=0.377 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEec-c-c---------------cc---c--cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 25 IALVKQVGFDSIRFS-I-S---------------WS---R--ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 25 i~l~~~lG~~~~R~s-i-~---------------W~---r--i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
|+-||+||++++=+. | + |. . ..|++.. |.-....++=+++||++|.++||++|+.+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 889999999998765 2 1 10 0 1122210 221112356689999999999999999854
No 110
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.92 E-value=85 Score=33.33 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
++|++.+.+.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5677999999999999998665441 25568999999999988887765545
No 111
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=46.82 E-value=88 Score=32.51 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
..|++||++++++|++.+=+.|- .. ...+. +....++++..+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999998886 11 23333 456689999999999988774
No 112
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.60 E-value=71 Score=32.63 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=43.6
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
++.++++|.+++-+-+-|. |+. ...+|..-+++..++.++|.+.||..++=+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999986 543 134578889999999999999999988853
No 113
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=46.40 E-value=1.8e+02 Score=30.27 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecccccc-----------cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc--------
Q 012937 22 KEDIALVKQVGFDSIRFSISWSR-----------ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-------- 82 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~r-----------i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-------- 82 (453)
.+-++.++++|++.+=+.=-|.. ..|+. .++ +.| ...+++.+++.|+++=+=+-
T Consensus 61 ~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 61 LELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 44568899999999888889964 33332 222 234 55999999999999965320
Q ss_pred --cCCCchhhhhhhC-----C-------CCChhhHHHHHHHHHHHHHHhcCcceEE-EeccC
Q 012937 83 --HWDTPQALEDEYG-----G-------FLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNE 129 (453)
Q Consensus 83 --H~~~P~~l~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NE 129 (453)
.-..|.|+....+ | ..+|++.++..+-...+++.+| |+|. .=+|.
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~ 193 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNR 193 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEecccc
Confidence 1246888753211 1 3467888888888888888876 4443 23454
No 114
>PRK10785 maltodextrin glucosidase; Provisional
Probab=45.52 E-value=39 Score=37.23 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.3
Q ss_pred hHHHHHHHHHcCCCEEEecccc-------------cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISW-------------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W-------------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
..+-++-||+||++++=++=-. -+|-|.= | ..+=++++|+++.++||++|+++.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4566799999999999887311 1122221 2 234578999999999999999864
No 115
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=45.34 E-value=95 Score=35.21 Aligned_cols=106 Identities=19% Similarity=0.354 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc---cCCCc---------
Q 012937 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTP--------- 87 (453)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P--------- 87 (453)
++-++.++++|+. ..=..|.|-.-..+ -++|..+.-...++++.|.++|++.++.+. +-+..
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDyMd~ykD----FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~ 389 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDYMDGYKD----FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVA 389 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhhhhcccc----eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhh
Confidence 4556788888887 55555666433322 356766666688999999999999999887 22222
Q ss_pred --hhhhhh----------hCC------CCChhhHHHHHHHHHHHHHHhcCcce---EEEeccCcchhcc
Q 012937 88 --QALEDE----------YGG------FLSPKIVKDFGDYADLCFKEFGDRVK---HWITLNEPETVGE 135 (453)
Q Consensus 88 --~~l~~~----------~gg------w~~~~~~~~f~~ya~~~~~~~~~~v~---~w~t~NEp~~~~~ 135 (453)
.+..+. ..| ++|+++++++.+ .+++|.+.|. +|+-.|||..++.
T Consensus 390 ~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 390 KDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred hceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 001000 012 667766665554 5568888765 8999999987654
No 116
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=44.68 E-value=22 Score=36.23 Aligned_cols=96 Identities=26% Similarity=0.399 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCCC-----EEEeecCccCCCCCCCCCc----cccCchhHHHHHHHHHHHHHHHHHcCCCC---eE
Q 012937 320 KGIRELLLYLKKKYNPPP-----IYITENGVGDVNSSSWPIS----YALNDTVRVNYYNDHLSYILEAINSGGVD---VR 387 (453)
Q Consensus 320 ~gl~~~L~~~~~rY~~pp-----I~ITENG~~~~~~~~~~~~----~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~---V~ 387 (453)
.--..+|.++..+|+-|+ |+=+|.|++.........+ =...|..|..|.++.|.+.++-+++++++ .+
T Consensus 110 ~~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~ 189 (343)
T COG2951 110 AQYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALK 189 (343)
T ss_pred HHHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCccccc
Confidence 345568999999998653 4447888876543211111 12249999999999999999988772377 77
Q ss_pred EEEeccCcccccccCCCc------ceeeeEEEeCCCCccccccc
Q 012937 388 GYFAWSFLDNYEWEYGYT------SRFGIIYVDYKDGLRRSLKN 425 (453)
Q Consensus 388 GY~~WSl~Dn~EW~~Gy~------~rfGL~~VD~~~~~~R~pK~ 425 (453)
| +|+..+. .-|=.|.||++++.+|-+..
T Consensus 190 G----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw~ 223 (343)
T COG2951 190 G----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWN 223 (343)
T ss_pred c----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCcc
Confidence 7 6766432 35567779998778888873
No 117
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=44.48 E-value=71 Score=31.33 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhh
Q 012937 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKI 102 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 102 (453)
.+++++++.|++.+|+.++=|...-... -+.--++.++...+.++.+++.|+++.++..+| .+ +. +..
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 5789999999999999887654432211 133346678899999999999999998876655 11 11 123
Q ss_pred HHHHHHHHHHHHH
Q 012937 103 VKDFGDYADLCFK 115 (453)
Q Consensus 103 ~~~f~~ya~~~~~ 115 (453)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777654
No 118
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=43.38 E-value=1.4e+02 Score=32.27 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCc-c---cccc
Q 012937 325 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFL-D---NYEW 400 (453)
Q Consensus 325 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~-D---n~EW 400 (453)
.|..++++|++..|+-||...+..... ....+-.-.|. ..+...+...+.. | +.||+.|.|+ | ..-|
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~---~~~~~g~w~~~---~~y~~~ii~~lnn-~--~~gw~~WNl~LD~~GGP~~ 389 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD---TSVDLGSWDRA---ERYAHDIIGDLNN-W--VSGWIDWNLALDENGGPNW 389 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHHHT-T--EEEEEEEESEBETTS---T
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc---cccccccHHHH---HHHHHHHHHHHHh-h--ceeeeeeeeecCCCCCCcc
Confidence 466789999877799999876553210 00001112232 3345555667777 6 5799999985 3 2234
Q ss_pred cCCCcceeeeEEEeCCCCcccccccHHHHHHHH
Q 012937 401 EYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKF 433 (453)
Q Consensus 401 ~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 433 (453)
..++... .+-||-+ +.+-+..+.++.++.+
T Consensus 390 ~~n~~d~--~iivd~~-~~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 390 VGNFCDA--PIIVDSD-TGEFYKQPEYYAMGHF 419 (496)
T ss_dssp T---B----SEEEEGG-GTEEEE-HHHHHHHHH
T ss_pred cCCCCCc--eeEEEcC-CCeEEEcHHHHHHHHH
Confidence 4444333 3457875 4555556667654443
No 119
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=43.06 E-value=16 Score=29.21 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=13.6
Q ss_pred HHHHhcC--cceEEEeccC-cc
Q 012937 113 CFKEFGD--RVKHWITLNE-PE 131 (453)
Q Consensus 113 ~~~~~~~--~v~~w~t~NE-p~ 131 (453)
|+++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567766 5999999999 76
No 120
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=42.77 E-value=1.3e+02 Score=30.64 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=37.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
..+|++.+.+.|++.+|+....+.. +-..+.|..+++.|+++.+++.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 3689999999999999988754332 2246899999999999998874
No 121
>PRK12568 glycogen branching enzyme; Provisional
Probab=42.77 E-value=50 Score=37.22 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=58.0
Q ss_pred ccchHHH-HHHHHHcCCCEEEec-c-------cccc-----cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc-
Q 012937 18 YFRYKED-IALVKQVGFDSIRFS-I-------SWSR-----ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF- 82 (453)
Q Consensus 18 y~r~~eD-i~l~~~lG~~~~R~s-i-------~W~r-----i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~- 82 (453)
|.-..+. |+-+|+||++++=+. | +|.= .-|++. -|. .+=++.+|++|.++||++|+++.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~-~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR-HGS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 3344444 588999999998665 2 3420 112211 133 34588999999999999999854
Q ss_pred -cCCC----------c-hhhh-h-h---hCCC-------CChhhHHHHHHHHHHHHHHhc
Q 012937 83 -HWDT----------P-QALE-D-E---YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 83 -H~~~----------P-~~l~-~-~---~ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (453)
|+.- + .+.+ + + +..| .++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1 1100 0 0 0123 356788888888888888874
No 122
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.61 E-value=1.1e+02 Score=29.32 Aligned_cols=81 Identities=20% Similarity=0.425 Sum_probs=53.1
Q ss_pred cccCccccchHHHHHHHHHcCCCEEEec----------------------ccccccccCCCCCCCCChhHHHHHHHHHHH
Q 012937 12 DVADNFYFRYKEDIALVKQVGFDSIRFS----------------------ISWSRILPHGNISGGVNQQGVDFYNNLINE 69 (453)
Q Consensus 12 ~~a~d~y~r~~eDi~l~~~lG~~~~R~s----------------------i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~ 69 (453)
..+.+---.-+.=++||++||.+++.|- + | ++|.| .+| ++.+..++..
T Consensus 128 s~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG----GId---l~Nf~~I~~i 197 (236)
T TIGR03581 128 SQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG----GID---LDNFEEIVQI 197 (236)
T ss_pred ccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC----Ccc---HHhHHHHHHH
Confidence 3334444556777999999999998873 3 3 57775 455 4678899999
Q ss_pred HHHCCCeEEEeccc-CCCchhhhhhhCCCCChhhHHHHH
Q 012937 70 LISNGLTPFVTLFH-WDTPQALEDEYGGFLSPKIVKDFG 107 (453)
Q Consensus 70 l~~~Gi~p~vtL~H-~~~P~~l~~~~ggw~~~~~~~~f~ 107 (453)
+++.|++-++- | |.. .-|+.-|-+.++-+....
T Consensus 198 ~ldaGv~kviP--HIYss---iIDk~tG~TrpedV~~l~ 231 (236)
T TIGR03581 198 ALDAGVEKVIP--HVYSS---IIDKETGNTRVEDVKQLL 231 (236)
T ss_pred HHHcCCCeecc--cccee---ccccccCCCCHHHHHHHH
Confidence 99999988753 3 111 223335667765554443
No 123
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.52 E-value=46 Score=38.00 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWS---------------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+....+-++-+++||++++=+|=-+. +|.|.- | +.+=+++++++|.++||.+|+++.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34567889999999999997764332 333332 2 345588999999999999999853
No 124
>PTZ00445 p36-lilke protein; Provisional
Probab=42.26 E-value=51 Score=31.40 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCeEEEecccCCCchhhhh-hhCCCCChh---------hHHHHHHHHHHHH
Q 012937 61 DFYNNLINELISNGLTPFVTLFHWDTPQALED-EYGGFLSPK---------IVKDFGDYADLCF 114 (453)
Q Consensus 61 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~-~~ggw~~~~---------~~~~f~~ya~~~~ 114 (453)
+--+.+++.|++.||+.+++= ||.= +-. --|||.++. ..+.|..+.+.+-
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 345689999999999999862 3322 111 139999997 4555666555443
No 125
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=42.24 E-value=71 Score=32.44 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhh
Q 012937 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKI 102 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 102 (453)
.-|++|.+.|++-+=.|+ +.|++ .+...+..+.++++.+.+.|+++||+.. |.-|.. -||.- ..
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~ 83 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DN 83 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HH
Confidence 347889999988766655 33443 2335789999999999999999999985 877653 44433 23
Q ss_pred HHHHHHH
Q 012937 103 VKDFGDY 109 (453)
Q Consensus 103 ~~~f~~y 109 (453)
++.|.+.
T Consensus 84 l~~f~e~ 90 (360)
T COG3589 84 LSRFQEL 90 (360)
T ss_pred HHHHHHh
Confidence 4555544
No 126
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.54 E-value=1.3e+02 Score=29.29 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
.+|++.+++.|++.+|+.++.+.+ .-..++++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~---------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA---------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH---------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998766543 1246789999999999988873
No 127
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=41.53 E-value=96 Score=31.34 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHcCCCEEEecc--ccccccc-----CCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC------
Q 012937 19 FRYKEDIALVKQVGFDSIRFSI--SWSRILP-----HGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD------ 85 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si--~W~ri~p-----~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~------ 85 (453)
.+.++=++++++.|+|++=+.| ++..|-= .....|.. ...+.=..++++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 3567789999999999999987 5555521 11001211 11123367999999999999998665431
Q ss_pred -CchhhhhhhC----------CCCCh---hhHHHHHHHHHHHHHH
Q 012937 86 -TPQALEDEYG----------GFLSP---KIVKDFGDYADLCFKE 116 (453)
Q Consensus 86 -~P~~l~~~~g----------gw~~~---~~~~~f~~ya~~~~~~ 116 (453)
.|.|-....+ .|.|| ++.+.-.+-|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3444331112 38775 6677777777776643
No 128
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.51 E-value=1.6e+02 Score=29.79 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=65.3
Q ss_pred chHHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccC---C--Cchhhhh
Q 012937 20 RYKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---D--TPQALED 92 (453)
Q Consensus 20 r~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~--~P~~l~~ 92 (453)
...+.++.+++.|+. ++=+.+.|..-. + .-++|.+-..--+++|++|+++|++.++.+.-+ + .|..-+.
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~--~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~ 100 (339)
T cd06604 25 EVREIADEFRERDIPCDAIYLDIDYMDGY--R--VFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEG 100 (339)
T ss_pred HHHHHHHHHHHhCCCcceEEECchhhCCC--C--ceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHH
Confidence 345667888888876 555556665421 1 123444333335799999999999998755422 1 2222110
Q ss_pred h---------h------------C---CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 93 E---------Y------------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 93 ~---------~------------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
. . + -|.||+..++|.+.-+.++ ..| ---+|+=+|||.++
T Consensus 101 ~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 101 LENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred HHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCCCcccc
Confidence 0 0 1 2678888898877666654 233 13467889999865
No 129
>PLN02960 alpha-amylase
Probab=41.32 E-value=53 Score=37.73 Aligned_cols=97 Identities=12% Similarity=0.211 Sum_probs=58.6
Q ss_pred ccccchHHH-HHHHHHcCCCEEEec-cc-------ccc-----cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 16 NFYFRYKED-IALVKQVGFDSIRFS-IS-------WSR-----ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 16 d~y~r~~eD-i~l~~~lG~~~~R~s-i~-------W~r-----i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
..|.-..+. |+-+|+||++++=+. |. |.= .-|++. -|. .+=++.+|++|.++||.+|+++
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 345555544 899999999998876 21 210 001110 032 2347899999999999999997
Q ss_pred c--cCCC--c--h---------hhhh--h--hCCC-------CChhhHHHHHHHHHHHHHHhc
Q 012937 82 F--HWDT--P--Q---------ALED--E--YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 82 ~--H~~~--P--~---------~l~~--~--~ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (453)
. |+.. + . ++.. + +..| .++++.+.+.+=++.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4 4321 1 1 1110 0 0112 246778888888888888874
No 130
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=41.26 E-value=1.7e+02 Score=29.79 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCch
Q 012937 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (453)
Q Consensus 9 ~~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 88 (453)
.-+-+|.=||+ |+--+. ..+.|++.+|+. | |.+-. -+....+++.++++|+..=+..+|-.++.
T Consensus 72 ~iPlVADIHFd-~~lAl~-a~~~g~dkiRIN-------P-----GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~ 135 (346)
T TIGR00612 72 NVPLVADIHFD-YRLAAL-AMAKGVAKVRIN-------P-----GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLER 135 (346)
T ss_pred CCCEEEeeCCC-cHHHHH-HHHhccCeEEEC-------C-----CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcH
Confidence 34566777775 443333 446799999874 2 33322 36788999999999999999999999999
Q ss_pred hhhhhhCCCCChhhHHHHHHHHHHH
Q 012937 89 ALEDEYGGFLSPKIVKDFGDYADLC 113 (453)
Q Consensus 89 ~l~~~~ggw~~~~~~~~f~~ya~~~ 113 (453)
.+.++||+-..+..++--.++++.+
T Consensus 136 ~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 136 RLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999876544455666656666553
No 131
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=40.47 E-value=1.5e+02 Score=31.05 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=68.1
Q ss_pred chHHHHHHHHHcCCCE--EEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccC---CCc---hh--
Q 012937 20 RYKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTP---QA-- 89 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~--~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P---~~-- 89 (453)
...+-++.+++.|+.. +=+...|..-... -++|++-..-.+++++.|+++|++.++.++-+ +.+ ..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~----f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~ 119 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD----FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDE 119 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT----T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc----cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhh
Confidence 4567778888888764 4444556553221 45676666567899999999999998876532 222 11
Q ss_pred ------hhhhhCC----------------CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 90 ------LEDEYGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 90 ------l~~~~gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
+.....| |.|++..++|.+..+.+++.+| ---+|+=+|||..+
T Consensus 120 ~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 120 AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 1000112 7788999999888888777654 23567899999865
No 132
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.37 E-value=1e+02 Score=30.56 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=48.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
-++|++...+.|++.+-+.++=|..+-.... +.=-++.++.+.++|...+++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5899999999999999988877666544211 34456789999999999999999999887
No 133
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.35 E-value=79 Score=31.41 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=57.9
Q ss_pred cccchHHH-HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC----chhhh
Q 012937 17 FYFRYKED-IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT----PQALE 91 (453)
Q Consensus 17 ~y~r~~eD-i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~----P~~l~ 91 (453)
||--|.++ .+.+++.+-+---++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 34433333 6677777766677888999998876322322 358999999999999999976541 11110
Q ss_pred hhhCCCCChhhHHHHHHHHHHHHHHhc
Q 012937 92 DEYGGFLSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 92 ~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (453)
.-..++...+.|++=+-.+++++|
T Consensus 80 ---~~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 80 ---AVLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred ---HHhcCHHHHHHHHHHHHHHHHHhC
Confidence 112345566667666666666664
No 134
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=40.04 E-value=4e+02 Score=26.77 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=32.9
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccC
Q 012937 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (453)
Q Consensus 43 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~ 84 (453)
++..|.. .+-++.+-+..++++.+.++++|-..++=|+|-
T Consensus 61 ~~~~~~~--~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 61 GRITPGD--LGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred cCCCCCc--eeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 3444543 256788899999999999999999999999994
No 135
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=40.04 E-value=94 Score=29.83 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhc
Q 012937 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 60 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (453)
++...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4667899999999999999998755443221 011344555666665555555554
No 136
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.90 E-value=71 Score=32.51 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChh
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 101 (453)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..- + ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CC
Confidence 589999999999999998755432 124689999999999999988631 1 12
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 012937 102 IVKDFGDYADLCFKEFGD 119 (453)
Q Consensus 102 ~~~~f~~ya~~~~~~~~~ 119 (453)
.++.+++.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3566777777754 4553
No 137
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.83 E-value=87 Score=30.54 Aligned_cols=79 Identities=14% Similarity=0.016 Sum_probs=53.5
Q ss_pred HHHHHHHHHcC----CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCC
Q 012937 22 KEDIALVKQVG----FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 22 ~eDi~l~~~lG----~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw 97 (453)
.+|++++.+.| ++.+|+.++.|.+.-... -+.--++.++-..+++..++++|+++.+++.+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 999999887665532211 02222356788889999999999987754321 222
Q ss_pred CChhhHHHHHHHHHHHHH
Q 012937 98 LSPKIVKDFGDYADLCFK 115 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~ 115 (453)
..++.+.+.++.+.+
T Consensus 140 ---~~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 ---TDLDFLIEVVEAAIE 154 (268)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 236666777777653
No 138
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=39.82 E-value=1.2e+02 Score=32.90 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=66.5
Q ss_pred hHHHHHHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
=++.+++|+++|++.+-++|. -.++.-.-. .| . .++-..+.+..+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-h---t~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-H---TVRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-C---CHHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 368899999999997777762 222221110 11 1 234456788899999998766664 56653
Q ss_pred ChhhHHHHHHHHHHHHH--Hh-cCcceEEEeccCcchhcccCcccCcCCCC
Q 012937 99 SPKIVKDFGDYADLCFK--EF-GDRVKHWITLNEPETVGECGYAKGTKAPG 146 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~--~~-~~~v~~w~t~NEp~~~~~~gy~~G~~~Pg 146 (453)
++.+.+.+=++.+++ .+ -|.|+.+-+.=.|......-|..|.|.|.
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224455565666664 24 36677777666666554444666777664
No 139
>PRK12677 xylose isomerase; Provisional
Probab=39.59 E-value=3e+02 Score=28.53 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=46.9
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCchhhhhhhCCCC
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~ggw~ 98 (453)
-..|-++.++++|++++=+.. ..+.|-. -...+ --+..+++-+.|.+.||++. +|...|..|.+- .|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~-~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~---~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAE-RDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK---DGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC---CChhh-hHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc---CCcCC
Confidence 468899999999999986632 2344442 11111 11246788888999999976 565555556542 38888
Q ss_pred Ch
Q 012937 99 SP 100 (453)
Q Consensus 99 ~~ 100 (453)
++
T Consensus 103 s~ 104 (384)
T PRK12677 103 SN 104 (384)
T ss_pred CC
Confidence 75
No 140
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=38.58 E-value=2.9e+02 Score=28.64 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=47.6
Q ss_pred cCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE-ecccCCCchhhhh
Q 012937 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-TLFHWDTPQALED 92 (453)
Q Consensus 14 a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v-tL~H~~~P~~l~~ 92 (453)
++-..-...+-++.++++|++.+=| ....+.|-+ -...+.. ...+++-+.|.++||++.. +..-+..|.+.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-- 98 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK-- 98 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc--
Confidence 3344456788899999999998854 334455654 1111111 2366788889999999654 43223234332
Q ss_pred hhCCCCCh
Q 012937 93 EYGGFLSP 100 (453)
Q Consensus 93 ~~ggw~~~ 100 (453)
.||+.++
T Consensus 99 -~g~las~ 105 (382)
T TIGR02631 99 -DGGFTSN 105 (382)
T ss_pred -CCCCCCC
Confidence 2788875
No 141
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.39 E-value=88 Score=30.12 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=43.6
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhc
Q 012937 39 SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (453)
Q Consensus 39 si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (453)
.+.|..+.++|. ..... .......+++.++++|+++++.+..+....... -..++...+.|++=+-..+++++
T Consensus 27 ~~~f~~i~~~G~--l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGT--LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCe--EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 345767766652 22211 123467889999999999999987665432211 12355666666655555555553
No 142
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=37.36 E-value=80 Score=32.12 Aligned_cols=112 Identities=22% Similarity=0.443 Sum_probs=57.1
Q ss_pred ccchHHHHHHHHHcCCCEEEecc----cccccccCC--------------------------CCCCCCChh----HHHHH
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSI----SWSRILPHG--------------------------NISGGVNQQ----GVDFY 63 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si----~W~ri~p~~--------------------------~~~g~~n~~----~~~~y 63 (453)
|.||+..|+.|+=-|||..=--+ -|-|++-+- ...|.+..+ -.+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999999542222 233333221 001222222 23445
Q ss_pred HHHHHHHHHCCCeEEEecccCCCchhhhhhh--------CCC--------CChhhHHHHHHHHHHH----HHHhcCcceE
Q 012937 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGF--------LSPKIVKDFGDYADLC----FKEFGDRVKH 123 (453)
Q Consensus 64 ~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~--------ggw--------~~~~~~~~f~~ya~~~----~~~~~~~v~~ 123 (453)
+++++.+++.||+|++--+-=-.|..+.+++ |.| ++| .-+.|++.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999877555788776653 223 233 235566655544 45577 4455
Q ss_pred EE--eccCcc
Q 012937 124 WI--TLNEPE 131 (453)
Q Consensus 124 w~--t~NEp~ 131 (453)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 54 889843
No 143
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.55 E-value=1.5e+02 Score=32.69 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
++|++++.+.|++.+|+..+.+.+ +-....|+..+++|+.+.+++.+-+.|
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 144 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSP 144 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 556899999999999999776543 225577788888898888887665555
No 144
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.38 E-value=1.5e+02 Score=30.11 Aligned_cols=60 Identities=13% Similarity=0.325 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCch
Q 012937 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (453)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 88 (453)
+++.+|++|.+++.|=+=|. |+. +-.+|..-.++.+++.++|+++||-=++=+.-+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 47899999999999988774 343 3568888999999999999999999998887776554
No 145
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=35.99 E-value=93 Score=34.96 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHcCCCEEEecc--cccc--------------cccCCCCCCCCCh-----hHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 25 IALVKQVGFDSIRFSI--SWSR--------------ILPHGNISGGVNQ-----QGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 25 i~l~~~lG~~~~R~si--~W~r--------------i~p~~~~~g~~n~-----~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
|+-||+||++++=+.= +... --|... -.++. ..++=+++||++|.++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999997762 1110 011100 01121 1245588999999999999999854
No 146
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=35.00 E-value=29 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=31.2
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 43 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
|++-|.. +.=-.++++...+++..|.++|| +++.|++
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFq 55 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQ 55 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhh
Confidence 5677875 55567899999999999999999 8888875
No 147
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=34.68 E-value=20 Score=34.81 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcccCcCC
Q 012937 65 NLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA 144 (453)
Q Consensus 65 ~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~G~~~ 144 (453)
+..--+.++.+.|+++||||+.=..+ +-+....+.++.+.+=|+.--.++..+-..|-.-....+.+.+||..-.++
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred CcceeeecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 34334455568999999999963333 345555677777777555544444333222323333345567899887763
No 148
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.43 E-value=1e+02 Score=31.44 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=39.9
Q ss_pred hHHHHHHHHHcCCCEEEeccc-cc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCch
Q 012937 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQ 88 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~ 88 (453)
=++.++.|+++|++.+.++|. -+ ++...- |+. ...+-+.+.|+.+++.|+.++ ++|. +++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLPL 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCCC
Confidence 368899999999996666662 32 222221 221 123557789999999999754 4443 56664
No 149
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=34.21 E-value=64 Score=38.74 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEecccccccc----------------cCCCCCCCCCh--h--HHHHHHHHHHHHHHCCCeEEEecc
Q 012937 23 EDIALVKQVGFDSIRFSISWSRIL----------------PHGNISGGVNQ--Q--GVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~----------------p~~~~~g~~n~--~--~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+.|+-||+||++++=+.=-..-.. |... -.++. . .++=+++||++|.++||++|+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~y--fa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAF--LAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCC--CCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999997762211110 0000 01111 1 455688999999999999999843
No 150
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.91 E-value=1.2e+02 Score=30.75 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCchhhhhhhCCCC
Q 012937 22 KEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~ggw~ 98 (453)
++.+++|+++|+|-+.++| +-+ .+...- |+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg---------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL---------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC----------
Confidence 6889999999999777776 443 222221 3221 13457789999999999855 6664 56664
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcc
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (453)
++.+.|.+-.+.+.+-=.++|..+...=||.
T Consensus 162 --qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 --DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2244555555555442233444443333444
No 151
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.79 E-value=3e+02 Score=28.10 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCcccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 10 ~~~~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
-+-+|.=||+ |+= +....+.|+..+|+. | |.+-.+ +....+++.++++||..=+..+|-.+..-
T Consensus 75 vPLVaDiHf~-~rl-a~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~ 138 (361)
T COG0821 75 VPLVADIHFD-YRL-ALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKR 138 (361)
T ss_pred CCEEEEeecc-HHH-HHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHH
Confidence 3445555666 443 344557789999863 3 333322 36889999999999999999999999999
Q ss_pred hhhhhCCCCChhhHHHHHHHHHHH
Q 012937 90 LEDEYGGFLSPKIVKDFGDYADLC 113 (453)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~ 113 (453)
+.++||+-..+..++--..+++.+
T Consensus 139 ~~~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 139 LLEKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999988766666666555565554
No 152
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.72 E-value=1.2e+02 Score=30.25 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhcccCcc
Q 012937 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA 139 (453)
Q Consensus 60 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~ 139 (453)
++-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 34567899999999999777654 45553 234666666666655445678888777788766554455
Q ss_pred cCcCCC
Q 012937 140 KGTKAP 145 (453)
Q Consensus 140 ~G~~~P 145 (453)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 566554
No 153
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.40 E-value=93 Score=38.49 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWS---------------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+....+-+.-+++||++++=+|=-+. +|-|.- | +.+=+++++++|+++||.+|+++.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44567788999999999997764443 333332 2 345578999999999999999864
Q ss_pred --cC
Q 012937 83 --HW 84 (453)
Q Consensus 83 --H~ 84 (453)
|.
T Consensus 829 ~NH~ 832 (1693)
T PRK14507 829 PNHM 832 (1693)
T ss_pred cccc
Confidence 54
No 154
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.35 E-value=1.6e+02 Score=28.28 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEe-cccCCCc
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt-L~H~~~P 87 (453)
..++=++++++||.+.+++...+ . |.+....+.-....+..+++.+.+.+.||+..+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35677799999999998864322 1 2210001111223455577777778899987663 4565554
No 155
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.10 E-value=1.8e+02 Score=29.82 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=59.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCCCChhHHHHHHHHHHHHHHCCCe-EEEecccCCCchhhhhhhCCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
-++.++.|+++|++.+.++| ..+-++-- .-|... ..+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999665555 22222210 002211 124466789999999997 456654 56664
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
++.+.|.+-++.+.+-=-++|..+...=||...
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235567777777665444678888777788754
No 156
>PRK10426 alpha-glucosidase; Provisional
Probab=32.57 E-value=3.1e+02 Score=30.54 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred chHHHHHHHHHcCCCEEEecc-cccccccCCC--C---CCCCChhHHHHHHHHHHHHHHCCCeEEEecccC---CCchhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSI-SWSRILPHGN--I---SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQAL 90 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~--~---~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l 90 (453)
...+-++.+++.|+..==+-| .|........ . +-++|.+-..-.+++|++|++.|++.++.+.=+ +.|..-
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 355667888998876544433 6764422110 0 013354444445799999999999998876532 233321
Q ss_pred hhh---------hC---------------CCCChhhHHHHHHHHHHHHHHhcCcceEE-EeccCc
Q 012937 91 EDE---------YG---------------GFLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNEP 130 (453)
Q Consensus 91 ~~~---------~g---------------gw~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NEp 130 (453)
+-. .| -++||+..++|.+..+..+...| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 110 01 16789999999887765555555 6555 788994
No 157
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=32.01 E-value=1e+02 Score=34.03 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEecc
Q 012937 60 VDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 60 ~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
++=+++||++|.++||++|+.+.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 35588999999999999999854
No 158
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=31.85 E-value=2.7e+02 Score=28.93 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=58.9
Q ss_pred CcccCccccchHHHHHHHHHc-CCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCch
Q 012937 11 GDVADNFYFRYKEDIALVKQV-GFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQ 88 (453)
Q Consensus 11 ~~~a~d~y~r~~eDi~l~~~l-G~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~ 88 (453)
++.+.+-.++ .+|++.+.+| ++. .++++- .|.. ... .+.++.+.|+++||++. ++...|..|.
T Consensus 33 ~g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH----~~~d---~~~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~ 97 (378)
T TIGR02635 33 EGAARNVFEK-IEDAALVHRLTGIC-PTVALH----IPWD---RVE------DYEELARYAEELGLKIGAINPNLFQDDD 97 (378)
T ss_pred CCCCCCHHHH-HHHHHHHHhhcCCC-Cceeec----cCCc---ccc------CHHHHHHHHHHcCCceeeeeCCccCCcc
Confidence 4445555555 7888888888 555 666651 2222 112 26688888999999998 7877666665
Q ss_pred hhhhhhCCCCCh--hhHHHHHHHHHHHH---HHhcCc
Q 012937 89 ALEDEYGGFLSP--KIVKDFGDYADLCF---KEFGDR 120 (453)
Q Consensus 89 ~l~~~~ggw~~~--~~~~~f~~ya~~~~---~~~~~~ 120 (453)
+ ++|.+.|+ ++.+.-.++++.+. +.+|..
T Consensus 98 ~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 98 Y---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred c---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 24788875 45556666666554 667763
No 159
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=31.72 E-value=1.3e+02 Score=31.85 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEecc-cccc-cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCch
Q 012937 22 KEDIALVKQVGFDSIRFSI-SWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si-~W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 88 (453)
+|.+++|+++|++.+-++| +-+. +.-.- .-..+ ++.+.+.+..++++||.+.+++. +++|.
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~--~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg 349 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI--KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG 349 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC
Confidence 6788999999999888888 3322 21111 01122 35677999999999999887765 34553
No 160
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.53 E-value=1.6e+02 Score=28.88 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=50.3
Q ss_pred cCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCC
Q 012937 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (453)
Q Consensus 14 a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 86 (453)
+.+..+...+-.+.+|++|+..+|-+..=+|--|.+. .| +-+++ +..+-+.+.+.||..+.+.++-..
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~~g---l~~l~~~~~~~Gl~~~te~~d~~~ 103 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGEEG---LKILKEVGDKYNLPVVTEVMDTRD 103 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHHHH---HHHHHHHHHHcCCCEEEeeCChhh
Confidence 4667777888889999999999999976677766553 22 23444 556667779999999988875333
No 161
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=31.40 E-value=56 Score=32.10 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCCCEEEeecCccCCC
Q 012937 321 GIRELLLYLKKKYNPPPIYITENGVGDVN 349 (453)
Q Consensus 321 gl~~~L~~~~~rY~~ppI~ITENG~~~~~ 349 (453)
||--++. +.+++.| ++|||+|+=..+
T Consensus 185 gl~g~~~--k~~~g~P-~lLTEHGIY~RE 210 (268)
T PF11997_consen 185 GLLGALA--KYRYGRP-FLLTEHGIYTRE 210 (268)
T ss_pred HHHHHHH--HHHhCCC-EEEecCCccHHH
Confidence 6766654 3467775 999999997764
No 162
>PRK10658 putative alpha-glucosidase; Provisional
Probab=31.28 E-value=3e+02 Score=30.81 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCC---Cchhhhhh----
Q 012937 23 EDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALEDE---- 93 (453)
Q Consensus 23 eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l~~~---- 93 (453)
+-++.+++.|+. ++=+.+-|.+-.--+ +-++|.+-..--++||++|+++|+++++.+.-+- .|.+-+-.
T Consensus 287 ~~~~~~r~~~iP~d~i~lD~~w~~~~~~~--~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 287 SFIDGMAERDLPLHVFHFDCFWMKEFQWC--DFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred HHHHHHHHcCCCceEEEEchhhhcCCcee--eeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 334667777765 666666665432111 1234443333346899999999999988765322 22211100
Q ss_pred ---------------hC-----CCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcc
Q 012937 94 ---------------YG-----GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (453)
Q Consensus 94 ---------------~g-----gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (453)
.| -++||+..++|.+..+.+.+ .| ---+|.=+||+.
T Consensus 365 ~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~ 420 (665)
T PRK10658 365 LLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGERI 420 (665)
T ss_pred EEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCcee
Confidence 01 26789999999888877654 44 224667789974
No 163
>PLN02389 biotin synthase
Probab=30.20 E-value=1.5e+02 Score=30.70 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=42.7
Q ss_pred chHHHHHHHHHcCCCEEEecccccc-cccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
.-+|.++.||++|++.|-.+++=++ ++|.- ...- ..+..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i--~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNV--ITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCc--CCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999886333 55542 1112 346677999999999998876643
No 164
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=29.99 E-value=88 Score=32.90 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEecc------cccccccCCCCCCCC--ChhHHHHHHHHHHHHHHCCCeEEEec--cc
Q 012937 23 EDIALVKQVGFDSIRFSI------SWSRILPHGNISGGV--NQQGVDFYNNLINELISNGLTPFVTL--FH 83 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si------~W~ri~p~~~~~g~~--n~~~~~~y~~~i~~l~~~Gi~p~vtL--~H 83 (453)
+=++.+++||++++=++= ++.+--..-. ..+ ....++-.+++|+++.++||++|+++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 668999999999985541 1111111110 112 23456778899999999999999987 45
No 165
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.89 E-value=76 Score=30.61 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE
Q 012937 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (453)
Q Consensus 16 d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 79 (453)
....+++.-+++.+.+|.+++++........+.. ...-+..++.++++.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456677778999999999999864322111111 111134566788889999999997654
No 166
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.12 E-value=1.4e+02 Score=28.31 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=55.0
Q ss_pred HHHHHH----HHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCC
Q 012937 22 KEDIAL----VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 22 ~eDi~l----~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw 97 (453)
++|++. +++.|++.+|+.++=|....... -+.--++.++...++++.+++.|+++.+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------ 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKN-LNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------ 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHH-TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHh-hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc------------
Confidence 445544 45699999999987766444321 1333456788899999999999999977764321
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 012937 98 LSPKIVKDFGDYADLCFKE 116 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~ 116 (453)
+...+.+.++++.+.+.
T Consensus 133 --~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 --RTDPEELLELAEALAEA 149 (237)
T ss_dssp --GSSHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHc
Confidence 12356677777777655
No 167
>PRK09936 hypothetical protein; Provisional
Probab=28.51 E-value=5e+02 Score=25.96 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=43.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhh
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 91 (453)
|++=++.++.+|++++ =+.|++.--... |.-+ .+..+.+++..+.||+.+|.|+ +| |.|.+
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~f--g~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADF--GGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCc--ccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 3455899999999986 468999822111 2222 3577999999999999999997 44 55554
No 168
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.51 E-value=1.4e+02 Score=29.08 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHH
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINEL 70 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l 70 (453)
.....+||+.++++|++-+=|++-= | +|.+|.+.++ ++|+..
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~----~----dg~vD~~~~~---~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLD----V----DGHVDMPRMR---KIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeEC----C----CCCcCHHHHH---HHHHHh
Confidence 4567899999999999999998742 2 3789986654 666665
No 169
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=28.38 E-value=85 Score=35.14 Aligned_cols=65 Identities=18% Similarity=0.480 Sum_probs=43.5
Q ss_pred ccchHHH-HHHHHHcCCCEEEec-c-cc-ccc-----------ccCCCCCCCCC-hhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 18 YFRYKED-IALVKQVGFDSIRFS-I-SW-SRI-----------LPHGNISGGVN-QQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 18 y~r~~eD-i~l~~~lG~~~~R~s-i-~W-~ri-----------~p~~~~~g~~n-~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
|.-+.|+ +..+|+||.|++-+= | +- +.. -|... -|..+ ..-+.=.+.||++|...||++++.+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssr-Ygt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSR-YGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccc-ccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 8888888 999999999988642 1 22 121 12211 13333 1113348899999999999999998
Q ss_pred cc
Q 012937 82 FH 83 (453)
Q Consensus 82 ~H 83 (453)
.|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 76
No 170
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=28.14 E-value=5.1e+02 Score=25.91 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred chHHHHHHHHHcCCCEEEecc-cccccccCCC-C----CCCCChhHHHHHHHHHHHHHHCCCeEEEecccC---CCchhh
Q 012937 20 RYKEDIALVKQVGFDSIRFSI-SWSRILPHGN-I----SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQAL 90 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~-~----~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l 90 (453)
...+=++.+++.|+..==+-| .|........ . +-++|.+-..-..++|+.|+++|+++++.+.-+ +.+..+
T Consensus 24 ~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y 103 (317)
T cd06594 24 KVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYY 103 (317)
T ss_pred HHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhH
Confidence 345666888888877544444 4653211110 0 013455444446799999999999999877643 333321
Q ss_pred hhh--------------h--------C---CCCChhhHHHHHHHHHHHHHHhcCcce-EEEeccCcc
Q 012937 91 EDE--------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPE 131 (453)
Q Consensus 91 ~~~--------------~--------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 131 (453)
.+- + + -+.||+..++|.+-.+......| |+ +|+=+||+.
T Consensus 104 ~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 104 EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLG--LSGWMADFGEYL 168 (317)
T ss_pred HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcC--CcEEEecCCCCC
Confidence 110 0 0 15678999999887777655444 44 568899964
No 171
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=28.04 E-value=84 Score=28.00 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=38.8
Q ss_pred cccCccccchHHHHH-HHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeE
Q 012937 12 DVADNFYFRYKEDIA-LVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (453)
Q Consensus 12 ~~a~d~y~r~~eDi~-l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p 77 (453)
..+|-.....++|++ .|+++|+..+++.+.|+--.-. .-+.++ --..|++.||.|
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~----d~it~~-------gr~~l~~~giap 90 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT----DWITED-------AREKLREYGIAP 90 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh----HHCCHH-------HHHHHHhcCccC
Confidence 346777778888884 4777899999998887543322 334444 356889999988
No 172
>PRK12359 flavodoxin FldB; Provisional
Probab=27.21 E-value=1.8e+02 Score=26.63 Aligned_cols=66 Identities=23% Similarity=0.492 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEeccCcccccccCCCcc-----ee-eeEEEeCCCCcccccccHHHHHHHHHH
Q 012937 366 NYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTS-----RF-GIIYVDYKDGLRRSLKNSALWFKKFLR 435 (453)
Q Consensus 366 ~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~~Gy~~-----rf-GL~~VD~~~~~~R~pK~S~~~y~~ii~ 435 (453)
.|+.+-+..+.+.+++.|+.|.|+ |+. |.|+..++-.. +| ||. +|-+|..+-|..+-..|-++|..
T Consensus 95 ~~f~~a~~~l~~~l~~~Ga~ivG~--~~~-~gY~f~~s~a~~~~~~~f~gl~-lD~~nq~~~t~~ri~~W~~~~~~ 166 (172)
T PRK12359 95 EWFLDALGMLHDKLAPKGVKFVGY--WPT-EGYEFTSSKPLTADGQLFVGLA-LDEVNQYDLSDERIQQWCEQILL 166 (172)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEee--EeC-CCcccccceeeEcCCCEEEEEE-EcCCCchhhhHHHHHHHHHHHHH
Confidence 678888888889885339999995 553 78877665332 36 875 67764335577777778877653
No 173
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=27.15 E-value=1.6e+02 Score=34.79 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCEEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHcCCCCeEEEEeccCccccccc---C-----CCcce
Q 012937 336 PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWE---Y-----GYTSR 407 (453)
Q Consensus 336 ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d~Gv~V~GY~~WSl~Dn~EW~---~-----Gy~~r 407 (453)
-|++++|.|.+..+.. |. ++++. +++++ -=.+.|=|.|..+|-=-.. + +|.--
T Consensus 506 kP~i~~Ey~hamgn~~-----g~---------~~~yw----~~~~~-~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd 566 (1021)
T PRK10340 506 KPRILCEYAHAMGNGP-----GG---------LTEYQ----NVFYK-HDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGD 566 (1021)
T ss_pred CcEEEEchHhccCCCC-----CC---------HHHHH----HHHHh-CCceeEEeeeecCcccccccCCCCCEEEEECCC
Confidence 3599999998765431 11 23333 45665 5679999999999941110 1 12222
Q ss_pred e------------eeEEEeCCCCcccccccHHHHHHHHHHcC
Q 012937 408 F------------GIIYVDYKDGLRRSLKNSALWFKKFLRNQ 437 (453)
Q Consensus 408 f------------GL~~VD~~~~~~R~pK~S~~~y~~ii~~~ 437 (453)
| ||+ +..|+||++++.||.+.+.=
T Consensus 567 ~g~~p~~~~f~~~Glv------~~dr~p~p~~~e~k~~~~pv 602 (1021)
T PRK10340 567 YGDYPNNYNFCIDGLI------YPDQTPGPGLKEYKQVIAPV 602 (1021)
T ss_pred CCCCCCCcCcccceeE------CCCCCCChhHHHHHHhcceE
Confidence 2 443 24588999999999998753
No 174
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=26.94 E-value=1.6e+02 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcc
Q 012937 63 YNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRV 121 (453)
Q Consensus 63 y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v 121 (453)
.++.++.+++.|+.-+=--.+|... .....++-.+....+.+.+..+.|. .+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~--~~~~~~~~~~~~~~~~ld~~v~~a~-~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAY--QEPNPGYNYDETYLARLDRIVDAAQ-AYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTST--STTSTTTSBTHHHHHHHHHHHHHHH-HTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHh--cCCCCCccccHHHHHHHHHHHHHHH-hCCCeE
Confidence 6689999999999988766666222 1111133355666677766666663 335443
No 175
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.35 E-value=1.9e+02 Score=28.71 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=44.9
Q ss_pred hHHHHHHHHHcCCCEEEeccc----ccc---cccCCC----------CCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 21 YKEDIALVKQVGFDSIRFSIS----WSR---ILPHGN----------ISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~----W~r---i~p~~~----------~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
.++-|+.|+..++|.+-+-++ |.- ..|+-. ..|.+..+. ++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 567789999999999888776 521 223210 024555544 6699999999999999764
Q ss_pred CCCchhh
Q 012937 84 WDTPQAL 90 (453)
Q Consensus 84 ~~~P~~l 90 (453)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 677654
No 176
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.35 E-value=2.3e+02 Score=29.08 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=48.7
Q ss_pred cCccccchHHHHHHHHHcCCC-------EEE-------ecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHHCCCeEE
Q 012937 14 ADNFYFRYKEDIALVKQVGFD-------SIR-------FSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPF 78 (453)
Q Consensus 14 a~d~y~r~~eDi~l~~~lG~~-------~~R-------~si~W~ri~p~~~~~g~~n-~~~~~~y~~~i~~l~~~Gi~p~ 78 (453)
+++....-.|-.+.+|+++-. ..| .++.|.-+.-++..+|.+| ++||...++++-++.+.|+...
T Consensus 63 SI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~a 142 (353)
T PRK12755 63 SIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLA 142 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEE
Confidence 445555566667788888765 454 7788998875555568887 8999999999888889998554
No 177
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=26.27 E-value=67 Score=23.89 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHHH-CCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHH
Q 012937 64 NNLINELIS-NGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA 110 (453)
Q Consensus 64 ~~~i~~l~~-~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya 110 (453)
+++++.|.+ +||+|.+|.. .|-.-+ +++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~Le------keN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYLLE------KENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHHHH------HHHHHHHHHHh
Confidence 577877775 9999998863 564432 56777787773
No 178
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.23 E-value=1.7e+02 Score=27.63 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=34.8
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
.++||++|++.+=++-|=.| +.+. . ..+-+..++++||+|+++.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et---------d---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA---------D---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc---------H---HHHHHHHHHHCCCEEEEEE
Confidence 47899999998888877666 3332 1 4577899999999999998
No 179
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=26.01 E-value=60 Score=27.76 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=26.7
Q ss_pred EEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHc
Q 012937 338 IYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINS 381 (453)
Q Consensus 338 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d 381 (453)
.+|+|.||+. |..+.+|-+.-..+++.||..
T Consensus 2 rl~iEmGmG~-------------DlhGqD~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 2 ILFIEMGMGV-------------DQHGQNITKAAMRAVRNAIAS 32 (116)
T ss_pred eEEEEecccc-------------cccCccHHHHHHHHHHHHHhh
Confidence 5899999986 788889999999999999864
No 180
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.99 E-value=2.5e+02 Score=27.16 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=59.1
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCC--CCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCC
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISG--GVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 96 (453)
..+-++.+++.|+. ++=+.+.|..-. + .- ++|.+-..--.++|+.|+++|++.++.+. |
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~--~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P--------- 88 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--G--DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----P--------- 88 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--c--eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----h---------
Confidence 45667788886665 677777776432 2 13 56665556678999999999999998654 3
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
.+.+.|.+..+.+....| ---+|+=+|||...
T Consensus 89 ----~v~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 89 ----YIREWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ----hHHHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 225566655554432233 13567889999754
No 181
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=25.93 E-value=3e+02 Score=27.01 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcceEEE
Q 012937 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWI 125 (453)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~ 125 (453)
+|++|+++ ++++|+.|.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++..+.
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 58999977 5599999999999999876541 111 112355566777777777777766443
No 182
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.78 E-value=2.9e+02 Score=28.21 Aligned_cols=95 Identities=18% Similarity=0.275 Sum_probs=54.1
Q ss_pred hHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCchhhhhhhCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~ggw 97 (453)
-+|.+++|+++|++.+-++++ = .++...- ....+ .+-..+.|+.+++.|+..+ +.+ =+++|..
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPgq-------- 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPGQ-------- 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCCC--------
Confidence 478899999999997777762 2 2333221 12223 3557789999999999743 333 2566642
Q ss_pred CChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
+ .+.|.+=.+.+.+.=.+.|......-+|...
T Consensus 165 -t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 165 -T---IEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred -C---HHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 2 3344444444433222344444334566543
No 183
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.29 E-value=2.7e+02 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCCEEEecc----cccccccCCCC-CCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhh
Q 012937 21 YKEDIALVKQVGFDSIRFSI----SWSRILPHGNI-SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si----~W~ri~p~~~~-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l 90 (453)
.++=|++|+.+|+|.+-+=+ .+.. .|.-.. .|.+..+. ++++++.++++||++|..+ |+|..+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 67789999999999887644 2221 222100 25666655 5699999999999999765 566654
No 184
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.05 E-value=7.3e+02 Score=25.13 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=52.3
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh----------hhhhhC-----CCCC---hhhHHHHHHHHHHHH
Q 012937 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA----------LEDEYG-----GFLS---PKIVKDFGDYADLCF 114 (453)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~----------l~~~~g-----gw~~---~~~~~~f~~ya~~~~ 114 (453)
+-.+.+-+..++++.+.+.++|-..++=|+|.+.-.. .....+ .... .++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999543110 000000 0111 267888888666655
Q ss_pred HHhcCcceEEEeccCcchhcccCcccCcC
Q 012937 115 KEFGDRVKHWITLNEPETVGECGYAKGTK 143 (453)
Q Consensus 115 ~~~~~~v~~w~t~NEp~~~~~~gy~~G~~ 143 (453)
+. | |-=..+.+..||+...|
T Consensus 153 ~a-G--------fDgVeih~ahGyLl~qF 172 (337)
T PRK13523 153 EA-G--------FDVIEIHGAHGYLINEF 172 (337)
T ss_pred Hc-C--------CCEEEEccccchHHHHh
Confidence 43 3 22223456778887664
No 185
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.02 E-value=1.2e+02 Score=25.81 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-ccCCCCCCCCChhHHHHHHHHHHHHHHCCCeE
Q 012937 22 KEDIALVKQVGFDSIRFSIS-WSRI-LPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~-W~ri-~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p 77 (453)
++.++.|+++|++.+++|++ -..- ..+.. + .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~--~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII--N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH--S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh--c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999983 3221 11110 0 1124566779999999999985
No 186
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.88 E-value=4e+02 Score=25.71 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHC-CCeEEE
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFV 79 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~-Gi~p~v 79 (453)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999998888776544443 1233 3456777777777 666554
No 187
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.79 E-value=1.4e+02 Score=28.95 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=39.2
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEe
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 80 (453)
.-.+++.-++++++||.+.++++- .+..+... ..+.-...++.++++++.+.+.||...+=
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 344577888999999999999852 11111110 01112234567778889999999987663
No 188
>PTZ00445 p36-lilke protein; Provisional
Probab=24.78 E-value=1.5e+02 Score=28.25 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=38.8
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChh---------HHHHHHHHHHHHHHCCCeEEEecc
Q 012937 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQ---------GVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~---------~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
+++|++.|++++=+.++=.-|---. .|-.++. +-.-...++.+|+++||.++|-.+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hs--gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHS--GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhc--ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 5889999999998887765443111 1222221 234477899999999999988765
No 189
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=24.77 E-value=67 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.7
Q ss_pred EEEeecCccCCCCCCCCCccccCchhHHHHHHHHHHHHHHHHHc
Q 012937 338 IYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINS 381 (453)
Q Consensus 338 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~d 381 (453)
.+|+|.||+. |..+.+|-+.-..+++.||..
T Consensus 2 r~~iE~GmG~-------------DlhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 2 RLFIEMGMGN-------------DLHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eEEEEecccc-------------cccCCcHHHHHHHHHHHHHhh
Confidence 5899999986 678888999999999999865
No 190
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=24.76 E-value=52 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHH-HCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHH
Q 012937 64 NNLINELI-SNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDY 109 (453)
Q Consensus 64 ~~~i~~l~-~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 109 (453)
+++++.|. .++|+|.+|.. .|-.-+ +++++.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~Le------~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKLE------KENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHHH------HHCHHHHHHh
Confidence 57889995 66999999864 554322 4567777766
No 191
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.74 E-value=4.5e+02 Score=23.78 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
-|.+.+|+.|++.+=+=+. +| .+..|+ .+..-++.++++||. +..|||-.|
T Consensus 12 id~~~~k~~gi~fviiKat------eG--~~y~D~----~~~~~~~~a~~aGl~--~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EG--TTFVDS----YFNENYNGAKAAGLK--VGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CC--CcccCH----hHHHHHHHHHHCCCc--eEEEEEeeC
Confidence 4678888888775433332 34 245675 588899999999994 588998765
No 192
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.39 E-value=3.5e+02 Score=27.69 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=55.9
Q ss_pred chHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCe-EEEecccCCCchhhhhhhCC
Q 012937 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg 96 (453)
.-+|.+++|+++|++.+.+++ +-+ ++.-.- ++. ...+-..+.++.+++.||. +.++|. +++|..
T Consensus 106 i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~--~s~~~~~~a~~~l~~~g~~~v~~dli-~GlPgq------- 172 (375)
T PRK05628 106 TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL---DRT--HTPGRAVAAAREARAAGFEHVNLDLI-YGTPGE------- 172 (375)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCC--CCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCCC-------
Confidence 346889999999999666666 222 121111 111 1234567889999999998 656654 455532
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchhc
Q 012937 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (453)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~ 134 (453)
+.+.|.+=.+.+.+.=-+.|..+...-+|....
T Consensus 173 -----t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 173 -----SDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred -----CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 244455555554443235565554445666443
No 193
>PLN03153 hypothetical protein; Provisional
Probab=24.13 E-value=71 Score=34.43 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHCC-CeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHH----HHHHHHh--cCcceEEEeccCcchhcccCccc
Q 012937 68 NELISNG-LTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA----DLCFKEF--GDRVKHWITLNEPETVGECGYAK 140 (453)
Q Consensus 68 ~~l~~~G-i~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya----~~~~~~~--~~~v~~w~t~NEp~~~~~~gy~~ 140 (453)
..+.+.| +.|+|+||||+.=.-+ +-+-...+.++.|..=| ..++++. +|+..-|..- ...||..
T Consensus 325 ~G~les~p~~P~vSlHH~~~~~p~---fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV 395 (537)
T PLN03153 325 HGLLSSHPIAPFVSIHHVEAVDPF---YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVV 395 (537)
T ss_pred chHhhcCCCCCceeeeeccccccc---cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEE
Confidence 3455665 9999999999971111 12223346677776544 2233444 5666666543 6678877
Q ss_pred CcCCCC
Q 012937 141 GTKAPG 146 (453)
Q Consensus 141 G~~~Pg 146 (453)
-.|+-+
T Consensus 396 ~~y~~~ 401 (537)
T PLN03153 396 QVFPSI 401 (537)
T ss_pred EEecCC
Confidence 666544
No 194
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.08 E-value=45 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.7
Q ss_pred HHHHHHHHHHCCCeE
Q 012937 63 YNNLINELISNGLTP 77 (453)
Q Consensus 63 y~~~i~~l~~~Gi~p 77 (453)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 458889999999987
No 195
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.04 E-value=6.3e+02 Score=24.13 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=36.7
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 79 (453)
-++|-++.++++|++.+=+++.=.+..+.. ..++.+ ....+-+.|.++||+...
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~~---~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLAR---LDWSKE---ERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccccccc---ccCCHH---HHHHHHHHHHHcCCCceE
Confidence 358899999999999998876421111111 234443 355888899999998764
No 196
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.94 E-value=6.5e+02 Score=24.17 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=35.4
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 78 (453)
-+.+-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 468899999999999998864311111111 12233 346678888999999975
No 197
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.93 E-value=2.5e+02 Score=28.60 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=58.7
Q ss_pred cccchHHHHHHHHHcCCCEEEecccccccccCC--CCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhh
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 94 (453)
-+-.-++=++-+.++|++-+-+|| ..+-|.- ...| ..+=++++..++.+.+.+.||.++++ |.|+.
T Consensus 199 g~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G-~~dYdv~kvle~aE~i~~a~idvlIa------Pv~lP--- 266 (414)
T COG2100 199 GVLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAG-RKDYDVKKVLEVAEYIANAGIDVLIA------PVWLP--- 266 (414)
T ss_pred ceeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcC-ccccCHHHHHHHHHHHHhCCCCEEEe------eeecC---
Confidence 344456778999999999666666 3444431 1113 22234678889999999999999997 88983
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 012937 95 GGFLSPKIVKDFGDYADLCF 114 (453)
Q Consensus 95 ggw~~~~~~~~f~~ya~~~~ 114 (453)
| .|.+-...+.+||+.+-
T Consensus 267 -G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 267 -G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred -C-cChHHHHHHHHHHHHhC
Confidence 3 56666788888888754
No 198
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.92 E-value=68 Score=28.98 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 79 (453)
....++-+++++.||++.+++...+-...+... ..+.=...++.++.+++.+.++|+++.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 567788899999999999999976411111110 0011123456777888888899988655
No 199
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.86 E-value=2.5e+02 Score=27.78 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccc-----cCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccC-CC-ch---
Q 012937 21 YKEDIALVKQVGFD--SIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DT-PQ--- 88 (453)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~-----p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~-P~--- 88 (453)
.++-++.+++.|+. ++=+.+.|..-- .++.-.-++|.+-..-..++|++|+++|++.++.++-. .. |.
T Consensus 27 v~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~ 106 (292)
T cd06595 27 YLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQ 106 (292)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHH
Confidence 44555777766665 666667785421 01100124555555556799999999999999877532 11 11
Q ss_pred h--hhhhh-----------CCCCChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 89 A--LEDEY-----------GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 89 ~--l~~~~-----------ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
. +.... .-+.||+..+.|.+-....+...| -.-+|+=+|||...
T Consensus 107 y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 107 YPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCCccc
Confidence 1 11111 125566666554433333333333 13478889999754
No 200
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.73 E-value=2.9e+02 Score=28.97 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EecccCCCch
Q 012937 21 YKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQ 88 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~ 88 (453)
=++.+++|+++|++.+.++| +=+ ++...- |+.. ..+-..+.|+.|++.||..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~ 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC
Confidence 46889999999999777766 331 222221 2211 23457789999999999864 5553 56664
No 201
>PRK07094 biotin synthase; Provisional
Probab=23.42 E-value=1.3e+02 Score=30.12 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCEEEecccc--cccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEec
Q 012937 20 RYKEDIALVKQVGFDSIRFSISW--SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W--~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 81 (453)
.-+|+++.|+++|++.+-++++= .++...- .... ..+-+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i--~~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKL--HPGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHh--CCCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 44789999999999999998842 2444332 1112 23567889999999999865543
No 202
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.95 E-value=3.6e+02 Score=28.38 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=51.4
Q ss_pred cccchHHHH-----HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhh
Q 012937 17 FYFRYKEDI-----ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (453)
Q Consensus 17 ~y~r~~eDi-----~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 91 (453)
-|.+|.+|+ ++..+-|++.+|+. -. .| .++-.+.-|.+.+++|-....+++-=..|.
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-------DA------lN--D~RNl~~ai~a~kk~G~h~q~~i~YT~sPv--- 152 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-------DA------LN--DVRNLKTAIKAAKKHGAHVQGTISYTTSPV--- 152 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-------hh------cc--chhHHHHHHHHHHhcCceeEEEEEeccCCc---
Confidence 367778886 88889999999864 22 22 124466889999999999999887434442
Q ss_pred hhhCCCCChhhHHHHHHHHHHHHH
Q 012937 92 DEYGGFLSPKIVKDFGDYADLCFK 115 (453)
Q Consensus 92 ~~~ggw~~~~~~~~f~~ya~~~~~ 115 (453)
.+++.|.++|+.+.+
T Consensus 153 ---------Ht~e~yv~~akel~~ 167 (472)
T COG5016 153 ---------HTLEYYVELAKELLE 167 (472)
T ss_pred ---------ccHHHHHHHHHHHHH
Confidence 347778888777664
No 203
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=22.85 E-value=2e+02 Score=34.29 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHcCCCEEEeccc--------------------------ccc-----cccCCCCCCCCCh----hHHH
Q 012937 17 FYFRYKEDIALVKQVGFDSIRFSIS--------------------------WSR-----ILPHGNISGGVNQ----QGVD 61 (453)
Q Consensus 17 ~y~r~~eDi~l~~~lG~~~~R~si~--------------------------W~r-----i~p~~~~~g~~n~----~~~~ 61 (453)
-|.-..+-|+-||+||++++-+.=- |.= .-|++. ...|. ..++
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~--Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGM--YSEDPKDPELRIA 555 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccc--cccCCcCccccHH
Confidence 4555667799999999999976622 110 011110 00111 1145
Q ss_pred HHHHHHHHHHHCCCeEEEecc
Q 012937 62 FYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 62 ~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
=+++||++|.++||++|+.+.
T Consensus 556 EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecc
Confidence 688999999999999999854
No 204
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.78 E-value=3.5e+02 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC--CCCCCCChhHHHHHHHHHHHHHHCCC-eEEEecccCCCchhhhhhhCCCC
Q 012937 22 KEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGL-TPFVTLFHWDTPQALEDEYGGFL 98 (453)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~Gi-~p~vtL~H~~~P~~l~~~~ggw~ 98 (453)
+|-++.|+++|++ |+||.-...-++- . -|.. -..+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~-igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg---------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKA-IGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG---------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHH-hCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC----------
Confidence 6789999999999 5555443332210 0 0221 123557789999999999 4545554 56664
Q ss_pred ChhhHHHHHHHHHHHHHHhcCcceEEEe
Q 012937 99 SPKIVKDFGDYADLCFKEFGDRVKHWIT 126 (453)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t 126 (453)
++.+.|.+-.+.+.+.=-+.|.....
T Consensus 333 --Et~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 333 --EGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred --CCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 23455666566554433444554443
No 205
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.46 E-value=3.5e+02 Score=29.87 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEeccc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 83 (453)
.++|++++++.|++.+|+..+-+.+ +-....++..+++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV---------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH---------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 4567889999999999999766544 12345667777777777766643
No 206
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.28 E-value=3.5e+02 Score=26.32 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=40.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCCCChhhHHHHHHHHHHHHHHhcCcce
Q 012937 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVK 122 (453)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~ 122 (453)
+|++|+++ +++.|+.|.+.|+..++.+-+- |- ...-+.+...+..+.+.+.-++++.
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE-~~~lt~~Er~~l~~~~~~~~~~~~~ 71 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GE-SPTLSDEEHEAVIEAVVEAVNGRVP 71 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cc-hhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 58999977 5599999999999999876431 11 1223456667777777777777655
No 207
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.21 E-value=7.7e+02 Score=24.34 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchhhhhhhCCC
Q 012937 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 18 y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ggw 97 (453)
..+.++-++.+|+.|+ .++.+|+=+---|.. |..+. +++.++++.+.+.|+.- |+|. |- .|.
T Consensus 119 l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~~---~~~~~---~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~ 180 (287)
T PRK05692 119 LERFEPVAEAAKQAGV-RVRGYVSCVLGCPYE---GEVPP---EAVADVAERLFALGCYE-ISLG---------DT-IGV 180 (287)
T ss_pred HHHHHHHHHHHHHcCC-EEEEEEEEEecCCCC---CCCCH---HHHHHHHHHHHHcCCcE-EEec---------cc-cCc
Confidence 3446677899999997 467666654333554 56654 78999999999999974 4443 32 565
Q ss_pred CChhhHHHHHHHHHHHHHHhcCcceEEEeccCcchh
Q 012937 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (453)
.+| ....+.++.+.+++++.--.+.+-|-..+.
T Consensus 181 ~~P---~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla 213 (287)
T PRK05692 181 GTP---GQVRAVLEAVLAEFPAERLAGHFHDTYGQA 213 (287)
T ss_pred cCH---HHHHHHHHHHHHhCCCCeEEEEecCCCCcH
Confidence 654 456667777778887533345566666544
No 208
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=21.70 E-value=1.2e+02 Score=26.58 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecc
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 82 (453)
-+++++.|+++|+..+.+|++-..-.-.... . -....++.+-+.|+.+.++|+...+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKI-R-GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHH-h-cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4789999999999999999964332211000 0 0112346677888899998888776653
No 209
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.35 E-value=1.1e+02 Score=29.30 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=45.3
Q ss_pred ccCccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCchh
Q 012937 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (453)
Q Consensus 13 ~a~d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 89 (453)
+|.|..+. ++.+++++++|....-+-|-+.-+.-.| .++|..|++.|...+++++-.|+|.-
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~G--------------~~~i~~l~~~~~~i~~D~Kl~Di~~t 68 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAGG--------------PQFVRELKQRGFKVFLDLKLHDIPNT 68 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhcC--------------HHHHHHHHhcCCCEEEEeehhhcccc
Confidence 46677665 7899999999966544555554443211 26788999989999999998899863
No 210
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.04 E-value=1.9e+02 Score=25.70 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHcCCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHHCC-CeEEEec
Q 012937 19 FRYKEDIALVKQVGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTL 81 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~-W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL 81 (453)
..-++.++.|+++|++.+.+|+. ++.-.-+.. ....+ .+.+.+.|..++++| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAI-NRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh-cCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34478899999999999999986 543211100 11122 367889999999999 6555433
No 211
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=20.95 E-value=36 Score=16.39 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=6.9
Q ss_pred CCeEEEEec
Q 012937 384 VDVRGYFAW 392 (453)
Q Consensus 384 v~V~GY~~W 392 (453)
++|+-|+.|
T Consensus 3 cpviryccw 11 (11)
T PF08097_consen 3 CPVIRYCCW 11 (11)
T ss_pred cchhheecC
Confidence 577888877
No 212
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.73 E-value=86 Score=33.17 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=46.0
Q ss_pred hHHHHHHHHHcCCCEEEeccc-cc-ccccCCCCCCCCChhHHHHHHHHHHHHHHCCCe-EEEecccCCCchhhhhhhCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~ggw 97 (453)
=++.+++|+++|++.+-++++ =+ ++.-.- ....+ .+.+.+.++.|++.||+ +-++|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l--~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg--------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV--NRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK--------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC---------
Confidence 478899999999996666652 22 121111 11223 35577899999999996 444543 45554
Q ss_pred CChhhHHHHHHHHHHHHH
Q 012937 98 LSPKIVKDFGDYADLCFK 115 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~ 115 (453)
++.+.|.+-++.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAE 229 (455)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 234455555555544
No 213
>PRK01060 endonuclease IV; Provisional
Probab=20.66 E-value=4.9e+02 Score=25.03 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=37.3
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeE
Q 012937 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (453)
Q Consensus 20 r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p 77 (453)
-+++-++.++++|++++=+.+.-++.+.. +..+.+. .+++-+.+.++||+.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCHHH---HHHHHHHHHHcCCCC
Confidence 37888999999999999998876655432 2455544 445666778999984
No 214
>PLN02808 alpha-galactosidase
Probab=20.61 E-value=2.5e+02 Score=29.26 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=46.6
Q ss_pred ccccchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEecccCCCc
Q 012937 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (453)
Q Consensus 16 d~y~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 87 (453)
..|.+++.|.+.+++-|++.+.+.---. . +. + .-+.|..+-++|.+-|-..+..|+.|..+
T Consensus 130 Gs~~~e~~DA~~fA~WGvDylK~D~C~~----~----~~-~--~~~~y~~m~~AL~~tGRpi~~slc~wg~~ 190 (386)
T PLN02808 130 GSLGHEEQDAKTFASWGIDYLKYDNCEN----T----GT-S--PQERYPKMSKALLNSGRPIFFSLCEWGQE 190 (386)
T ss_pred cchHHHHHHHHHHHHhCCCEEeecCcCC----C----Cc-c--HHHHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 4578899999999999999999875321 1 11 1 23579999999999997667789987643
No 215
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.56 E-value=2.1e+02 Score=30.27 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=46.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCC--CCCCCCChhHHHHHHHHHHHHHHCCCe-EEEecccCCCchhhhhhhCCC
Q 012937 21 YKEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (453)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~ggw 97 (453)
=+|.+++|+++|++.+-++| ..+-|+- ...... ..+-..+.|+.+++.|++ +-++|. +++|..
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~---~~~~~~~ai~~lr~~G~~~v~~dli-~GlPgq-------- 216 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQ---PEEMVARAVELLRAAGFESINFDLI-YGLPHQ-------- 216 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCC---CHHHHHHHHHHHHhcCCCcEEEeEE-EeCCCC--------
Confidence 47899999999999666665 2222210 000112 234567899999999997 445553 455532
Q ss_pred CChhhHHHHHHHHHHHHH
Q 012937 98 LSPKIVKDFGDYADLCFK 115 (453)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~ 115 (453)
+.+.|.+-.+.+.+
T Consensus 217 ----t~e~~~~tl~~~~~ 230 (453)
T PRK13347 217 ----TVESFRETLDKVIA 230 (453)
T ss_pred ----CHHHHHHHHHHHHh
Confidence 34455555555553
No 216
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.47 E-value=2.2e+02 Score=27.58 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHCCCeEE
Q 012937 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (453)
Q Consensus 19 ~r~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 78 (453)
.-+.|-+++++++|++.+=+++.-....+.. -.... .....+-+.|.++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCce
Confidence 3578999999999999999976554332322 12222 346688899999999875
Done!