Query 012938
Match_columns 453
No_of_seqs 274 out of 1029
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 3.9E-19 1.3E-23 145.2 4.7 66 354-419 6-71 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 2.6E-18 9E-23 143.8 5.8 62 360-421 10-71 (89)
3 3k2a_A Homeobox protein MEIS2; 99.7 7E-18 2.4E-22 132.8 5.7 62 360-421 3-64 (67)
4 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.9E-22 132.4 6.6 65 354-418 6-70 (73)
5 1du6_A PBX1, homeobox protein 99.7 7E-17 2.4E-21 124.7 6.7 62 355-416 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.7 1.3E-16 4.4E-21 130.1 7.1 65 356-420 2-66 (87)
7 1puf_B PRE-B-cell leukemia tra 99.7 1.4E-16 4.8E-21 126.2 6.9 62 356-417 2-63 (73)
8 1k61_A Mating-type protein alp 99.6 2.7E-16 9.1E-21 120.0 6.6 58 358-415 1-58 (60)
9 1mnm_C Protein (MAT alpha-2 tr 99.6 8.6E-16 3E-20 125.7 7.5 61 354-414 26-86 (87)
10 1le8_B Mating-type protein alp 99.6 1.1E-15 3.7E-20 124.5 7.2 61 358-418 5-65 (83)
11 1akh_A Protein (mating-type pr 99.5 2.1E-14 7.3E-19 109.6 5.4 58 354-414 4-61 (61)
12 2ecc_A Homeobox and leucine zi 99.5 4.5E-14 1.5E-18 115.0 5.9 59 357-418 5-63 (76)
13 1bw5_A ISL-1HD, insulin gene e 99.5 7.4E-14 2.5E-18 108.5 6.4 59 355-416 3-61 (66)
14 2da4_A Hypothetical protein DK 99.4 4.7E-14 1.6E-18 113.6 4.6 63 353-415 6-69 (80)
15 2cra_A Homeobox protein HOX-B1 99.4 1.3E-13 4.4E-18 108.4 6.7 61 353-416 5-65 (70)
16 2dmu_A Homeobox protein goosec 99.4 1.3E-13 4.3E-18 108.3 6.4 60 354-416 6-65 (70)
17 1ig7_A Homeotic protein MSX-1; 99.4 1.4E-13 4.6E-18 104.2 6.1 57 356-415 1-57 (58)
18 2djn_A Homeobox protein DLX-5; 99.4 1.5E-13 5.3E-18 108.0 6.5 60 354-416 6-65 (70)
19 2da3_A Alpha-fetoprotein enhan 99.4 1.2E-13 4.3E-18 110.4 5.9 61 353-416 15-75 (80)
20 2hdd_A Protein (engrailed home 99.4 1.4E-13 4.9E-18 105.3 5.7 58 355-415 3-60 (61)
21 2l7z_A Homeobox protein HOX-A1 99.4 2.1E-13 7.1E-18 108.4 6.8 61 353-416 5-65 (73)
22 2da1_A Alpha-fetoprotein enhan 99.4 1.2E-13 4.2E-18 108.2 5.4 60 353-415 5-64 (70)
23 2da2_A Alpha-fetoprotein enhan 99.4 2E-13 6.9E-18 107.0 6.6 60 354-416 6-65 (70)
24 1jgg_A Segmentation protein EV 99.4 1.7E-13 6E-18 104.5 6.0 57 356-415 2-58 (60)
25 2dmt_A Homeobox protein BARH-l 99.4 2.3E-13 8E-18 109.7 6.7 61 353-416 15-75 (80)
26 2e1o_A Homeobox protein PRH; D 99.4 2.1E-13 7.3E-18 107.2 6.3 60 354-416 6-65 (70)
27 1fjl_A Paired protein; DNA-bin 99.4 2.1E-13 7.1E-18 110.0 6.3 61 353-416 16-76 (81)
28 2k40_A Homeobox expressed in E 99.4 2.2E-13 7.6E-18 106.1 6.2 58 356-416 2-59 (67)
29 2dmq_A LIM/homeobox protein LH 99.4 2.8E-13 9.7E-18 108.7 6.7 61 354-417 6-66 (80)
30 2cue_A Paired box protein PAX6 99.4 3.9E-13 1.3E-17 108.3 7.5 62 354-418 6-67 (80)
31 2h1k_A IPF-1, pancreatic and d 99.4 2.5E-13 8.4E-18 104.8 6.0 59 355-416 3-61 (63)
32 2vi6_A Homeobox protein nanog; 99.4 2.7E-13 9.2E-18 104.1 6.0 58 355-415 3-60 (62)
33 3rkq_A Homeobox protein NKX-2. 99.4 4E-13 1.4E-17 100.9 6.7 56 356-414 3-58 (58)
34 1nk2_P Homeobox protein VND; h 99.4 4.5E-13 1.5E-17 107.3 7.0 63 353-418 7-69 (77)
35 3a02_A Homeobox protein arista 99.4 4.1E-13 1.4E-17 102.5 5.8 56 358-416 2-57 (60)
36 2dms_A Homeobox protein OTX2; 99.4 4.5E-13 1.5E-17 107.8 6.2 60 353-415 5-64 (80)
37 1zq3_P PRD-4, homeotic bicoid 99.4 5.5E-13 1.9E-17 104.4 6.4 59 355-416 2-60 (68)
38 1wh5_A ZF-HD homeobox family p 99.4 6.4E-13 2.2E-17 108.0 6.9 62 354-415 16-78 (80)
39 2kt0_A Nanog, homeobox protein 99.4 7.3E-13 2.5E-17 107.2 6.7 60 353-415 20-79 (84)
40 1puf_A HOX-1.7, homeobox prote 99.4 1.1E-12 3.7E-17 105.0 7.6 62 353-417 11-72 (77)
41 1ftt_A TTF-1 HD, thyroid trans 99.4 6.9E-13 2.4E-17 103.9 6.1 58 356-416 3-60 (68)
42 1yz8_P Pituitary homeobox 2; D 99.4 2.7E-13 9.3E-18 106.0 3.8 59 355-416 3-61 (68)
43 1ahd_P Antennapedia protein mu 99.4 5.4E-13 1.8E-17 104.6 5.3 57 356-415 3-59 (68)
44 2m0c_A Homeobox protein arista 99.3 1.4E-12 4.7E-17 103.0 6.8 60 353-415 7-66 (75)
45 1uhs_A HOP, homeodomain only p 99.3 1.5E-12 5E-17 102.9 6.9 57 357-416 3-60 (72)
46 2dn0_A Zinc fingers and homeob 99.3 9.2E-13 3.1E-17 105.2 5.7 57 356-415 9-65 (76)
47 3a01_A Homeodomain-containing 99.3 8.6E-13 2.9E-17 109.7 4.9 63 353-418 15-77 (93)
48 3a03_A T-cell leukemia homeobo 99.3 1.3E-12 4.5E-17 98.7 5.4 53 360-415 2-54 (56)
49 1b8i_A Ultrabithorax, protein 99.3 1.5E-12 5.2E-17 105.4 5.7 60 354-416 19-78 (81)
50 2hi3_A Homeodomain-only protei 99.3 2.1E-12 7.4E-17 102.3 6.3 57 357-416 4-61 (73)
51 2ly9_A Zinc fingers and homeob 99.3 3.4E-12 1.2E-16 101.0 6.9 58 355-415 6-63 (74)
52 2cuf_A FLJ21616 protein; homeo 99.3 2.2E-12 7.7E-17 107.1 6.1 62 353-417 5-81 (95)
53 2r5y_A Homeotic protein sex co 99.3 2.4E-12 8.1E-17 105.5 5.9 60 353-415 26-85 (88)
54 3d1n_I POU domain, class 6, tr 99.3 2.5E-12 8.6E-17 115.0 6.6 60 353-415 91-150 (151)
55 2da5_A Zinc fingers and homeob 99.3 3.3E-12 1.1E-16 102.0 6.4 56 357-415 9-64 (75)
56 3nau_A Zinc fingers and homeob 99.3 2.5E-12 8.7E-17 102.4 5.6 54 362-418 11-64 (66)
57 2d5v_A Hepatocyte nuclear fact 99.3 2.5E-12 8.5E-17 116.0 6.0 60 354-416 96-155 (164)
58 3nar_A ZHX1, zinc fingers and 99.3 3.1E-12 1E-16 106.6 6.0 65 355-422 25-89 (96)
59 1b72_A Protein (homeobox prote 99.3 4.1E-12 1.4E-16 105.9 6.0 60 354-416 33-92 (97)
60 2ecb_A Zinc fingers and homeob 99.3 7.6E-12 2.6E-16 104.4 7.5 54 359-415 15-68 (89)
61 1wh7_A ZF-HD homeobox family p 99.2 5.7E-12 1.9E-16 102.7 5.9 62 353-415 15-78 (80)
62 2e19_A Transcription factor 8; 99.2 1.5E-11 5.1E-16 96.2 6.4 54 359-415 7-60 (64)
63 1au7_A Protein PIT-1, GHF-1; c 99.2 1.2E-11 4.1E-16 110.6 6.2 60 353-415 85-144 (146)
64 2dmp_A Zinc fingers and homeob 99.2 1.4E-11 4.7E-16 101.8 6.0 55 358-415 16-70 (89)
65 1e3o_C Octamer-binding transcr 99.2 1.6E-11 5.5E-16 111.0 6.1 60 354-416 100-159 (160)
66 2xsd_C POU domain, class 3, tr 99.2 1.4E-11 4.7E-16 112.3 5.6 61 353-416 97-157 (164)
67 2da6_A Hepatocyte nuclear fact 99.2 4.2E-11 1.4E-15 102.5 7.6 66 353-421 4-90 (102)
68 1wi3_A DNA-binding protein SAT 99.2 3.1E-11 1.1E-15 97.1 6.2 60 353-415 5-65 (71)
69 2cqx_A LAG1 longevity assuranc 99.2 1.9E-11 6.5E-16 97.5 4.4 57 357-416 10-67 (72)
70 1lfb_A Liver transcription fac 99.1 3.5E-11 1.2E-15 101.9 5.8 62 353-417 7-89 (99)
71 2l9r_A Homeobox protein NKX-3. 99.1 5.8E-11 2E-15 94.6 5.5 53 361-416 10-62 (69)
72 3l1p_A POU domain, class 5, tr 99.1 3.6E-11 1.2E-15 108.3 4.8 59 354-415 95-153 (155)
73 1x2m_A LAG1 longevity assuranc 99.0 2.2E-10 7.5E-15 90.5 4.7 49 365-415 10-58 (64)
74 2h8r_A Hepatocyte nuclear fact 98.9 5.7E-10 1.9E-14 106.8 5.6 58 353-413 140-218 (221)
75 1mh3_A Maltose binding-A1 home 98.9 7.9E-10 2.7E-14 108.5 5.1 53 359-414 369-421 (421)
76 1ic8_A Hepatocyte nuclear fact 98.9 5.6E-10 1.9E-14 104.8 2.8 60 353-415 113-193 (194)
77 2da7_A Zinc finger homeobox pr 98.8 4.2E-09 1.4E-13 84.9 5.1 46 364-412 14-59 (71)
78 2nzz_A Penetratin conjugated G 95.7 0.0017 5.9E-08 46.2 -0.1 20 400-419 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.2 0.06 2.1E-06 43.3 2.1 43 363-408 14-56 (70)
80 3hug_A RNA polymerase sigma fa 71.6 2.9 0.0001 33.1 3.3 51 360-418 36-86 (92)
81 1hlv_A CENP-B, major centromer 70.7 7.1 0.00024 32.2 5.7 48 358-411 4-51 (131)
82 3t72_q RNA polymerase sigma fa 66.4 15 0.0005 30.4 6.6 62 361-426 19-80 (99)
83 2o8x_A Probable RNA polymerase 64.7 3.6 0.00012 30.1 2.4 50 360-417 14-63 (70)
84 1ku3_A Sigma factor SIGA; heli 64.7 9.3 0.00032 28.8 4.8 57 360-420 9-66 (73)
85 3mzy_A RNA polymerase sigma-H 63.4 13 0.00044 30.7 5.8 49 361-418 109-157 (164)
86 1tty_A Sigma-A, RNA polymerase 61.6 12 0.0004 29.4 4.9 57 360-420 17-73 (87)
87 1rp3_A RNA polymerase sigma fa 54.7 13 0.00044 32.8 4.6 50 360-417 186-235 (239)
88 2p7v_B Sigma-70, RNA polymeras 54.3 3.5 0.00012 30.8 0.7 54 361-418 5-58 (68)
89 1s7o_A Hypothetical UPF0122 pr 51.8 13 0.00043 31.2 3.8 49 361-417 22-70 (113)
90 1fse_A GERE; helix-turn-helix 50.6 20 0.00069 26.2 4.5 55 357-420 7-61 (74)
91 2glo_A Brinker CG9653-PA; prot 50.3 14 0.00047 27.0 3.4 46 359-408 3-48 (59)
92 1or7_A Sigma-24, RNA polymeras 49.6 20 0.00069 30.7 4.9 49 361-417 140-188 (194)
93 1tc3_C Protein (TC3 transposas 48.7 17 0.00057 23.9 3.4 43 360-410 4-46 (51)
94 2elh_A CG11849-PA, LD40883P; s 45.6 51 0.0017 25.7 6.3 45 356-408 17-61 (87)
95 1x3u_A Transcriptional regulat 45.3 24 0.00082 26.3 4.2 53 361-422 16-68 (79)
96 1xsv_A Hypothetical UPF0122 pr 44.9 15 0.00052 30.6 3.2 49 361-417 25-73 (113)
97 1je8_A Nitrate/nitrite respons 43.8 19 0.00065 28.0 3.5 54 360-422 20-73 (82)
98 1iuf_A Centromere ABP1 protein 43.5 26 0.0009 30.1 4.6 52 356-410 6-61 (144)
99 1p4w_A RCSB; solution structur 41.2 46 0.0016 27.2 5.5 50 358-416 31-80 (99)
100 3lsg_A Two-component response 40.5 41 0.0014 26.5 5.1 41 366-409 3-43 (103)
101 2q1z_A RPOE, ECF SIGE; ECF sig 38.7 11 0.00036 32.3 1.4 48 361-416 135-182 (184)
102 3c57_A Two component transcrip 38.0 38 0.0013 27.0 4.5 48 360-416 26-73 (95)
103 2rnj_A Response regulator prot 37.9 41 0.0014 26.2 4.6 52 360-420 28-79 (91)
104 2a6c_A Helix-turn-helix motif; 30.6 49 0.0017 25.2 3.9 31 388-418 34-64 (83)
105 2jn6_A Protein CGL2762, transp 29.2 64 0.0022 25.2 4.4 45 360-411 4-49 (97)
106 3b7h_A Prophage LP1 protein 11 28.0 47 0.0016 24.2 3.3 23 388-410 23-45 (78)
107 1we3_A CPN60(groel); chaperoni 28.0 1.5E+02 0.005 31.3 8.1 57 236-293 358-427 (543)
108 1jko_C HIN recombinase, DNA-in 27.2 45 0.0015 22.2 2.8 22 388-409 24-45 (52)
109 2jpc_A SSRB; DNA binding prote 27.1 50 0.0017 23.3 3.2 34 389-422 17-50 (61)
110 1l0o_C Sigma factor; bergerat 27.0 13 0.00046 32.6 0.0 47 360-414 197-243 (243)
111 1l9z_H Sigma factor SIGA; heli 26.3 97 0.0033 32.0 6.3 57 360-420 374-431 (438)
112 2xi8_A Putative transcription 25.6 33 0.0011 24.0 1.9 23 388-410 17-39 (66)
113 3clo_A Transcriptional regulat 25.4 98 0.0034 28.5 5.6 54 360-422 196-249 (258)
114 2r1j_L Repressor protein C2; p 25.3 34 0.0012 24.1 2.0 23 388-410 21-43 (68)
115 3mn2_A Probable ARAC family tr 25.2 1E+02 0.0034 24.4 5.0 40 366-409 3-42 (108)
116 3bd1_A CRO protein; transcript 25.2 36 0.0012 25.5 2.2 23 388-410 14-36 (79)
117 2q0o_A Probable transcriptiona 25.0 49 0.0017 30.0 3.4 47 361-416 175-221 (236)
118 3qq6_A HTH-type transcriptiona 24.9 55 0.0019 24.7 3.2 21 388-408 26-46 (78)
119 2k27_A Paired box protein PAX- 24.7 1.5E+02 0.0052 25.0 6.3 50 359-411 81-137 (159)
120 1zug_A Phage 434 CRO protein; 24.4 35 0.0012 24.4 1.9 24 388-411 19-42 (71)
121 1pdn_C Protein (PRD paired); p 24.0 1.1E+02 0.0039 23.8 5.1 46 360-408 74-126 (128)
122 3oio_A Transcriptional regulat 22.5 93 0.0032 24.8 4.3 40 366-409 8-47 (113)
123 1adr_A P22 C2 repressor; trans 22.0 43 0.0015 24.2 2.0 24 388-411 21-44 (76)
124 3bs3_A Putative DNA-binding pr 21.9 44 0.0015 24.3 2.0 23 388-410 26-48 (76)
125 2rn7_A IS629 ORFA; helix, all 21.2 1.5E+02 0.0052 23.4 5.3 50 359-410 4-55 (108)
126 1l3l_A Transcriptional activat 21.1 64 0.0022 29.2 3.4 48 359-415 171-218 (234)
127 1r69_A Repressor protein CI; g 21.1 46 0.0016 23.6 1.9 24 388-411 17-40 (69)
128 1kp8_A Groel protein; chaperon 21.0 1.1E+02 0.0037 32.4 5.5 56 235-291 358-426 (547)
129 2b5a_A C.BCLI; helix-turn-heli 20.9 47 0.0016 24.2 2.0 23 388-410 26-48 (77)
130 3mkl_A HTH-type transcriptiona 20.7 1.1E+02 0.0037 24.7 4.4 42 363-408 5-46 (120)
131 1hlv_A CENP-B, major centromer 20.4 1.4E+02 0.0046 24.3 5.0 57 357-413 68-130 (131)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-19 Score=145.15 Aligned_cols=66 Identities=42% Similarity=0.770 Sum_probs=61.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHH
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIE 419 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~ 419 (453)
..+++|+.|++.++.+|+.||.+|..||||+.++|..||..|||+..||.+||+|+|+|.|+++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999987764
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=143.81 Aligned_cols=62 Identities=52% Similarity=0.843 Sum_probs=58.9
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEM 421 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el 421 (453)
.-||++++.+|++||.+|..||||+.++|..||.+|||++.||+|||+|+|+|.|++++++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46999999999999999999999999999999999999999999999999999999988654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=7e-18 Score=132.83 Aligned_cols=62 Identities=50% Similarity=0.961 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEM 421 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el 421 (453)
.+||++++.+|+.||.+|..||||+.++|..||..|||+..||.+||+|+|+|.+++++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999988653
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=132.42 Aligned_cols=65 Identities=45% Similarity=0.733 Sum_probs=61.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
..+++|+.|++.++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.+++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45677889999999999999999999999999999999999999999999999999999998875
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7e-17 Score=124.71 Aligned_cols=62 Identities=35% Similarity=0.609 Sum_probs=58.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+++|+.|++.++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|.|.+++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35678899999999999999999999999999999999999999999999999999998763
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.3e-16 Score=130.08 Aligned_cols=65 Identities=35% Similarity=0.621 Sum_probs=60.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHH
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEE 420 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~e 420 (453)
+|+|+.|++.++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.++.+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 46789999999999999999999999999999999999999999999999999999998877543
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=1.4e-16 Score=126.16 Aligned_cols=62 Identities=37% Similarity=0.690 Sum_probs=58.6
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
+|+|+.|++.++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 56789999999999999999999999999999999999999999999999999999987754
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=2.7e-16 Score=120.03 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=55.0
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+++.|++.++.+|+.||..|+.+|||+.+++..||..+||+..||.+||+|+|+|.++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3578999999999999999999999999999999999999999999999999999765
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=8.6e-16 Score=125.71 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=57.2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW 414 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~ 414 (453)
..+++|+.|++.++.+|+.||..|+.+|||+.++|..||..+||+..||.+||+|+|+|.+
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3456688999999999999999999999999999999999999999999999999999975
No 10
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=1.1e-15 Score=124.48 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=57.1
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
+++.|+..++.+|+.||..|+.+|||+.+++..||..+||+..||.+||+|+|+|.++..+
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 4455999999999999999999999999999999999999999999999999999988654
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.49 E-value=2.1e-14 Score=109.60 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=47.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW 414 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~ 414 (453)
..+|+|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~---~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFR---RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---hCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3567789999999999999999 679999999999999999999999999999999853
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=4.5e-14 Score=115.00 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=54.3
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 357 RPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
+.++.|+++++.+|+.||. .+|||+.+++..||..|||++.||.+||+|+|.|.++..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~---~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFL---QCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3467799999999999999 7899999999999999999999999999999999877654
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.46 E-value=7.4e-14 Score=108.49 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=55.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+|+|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYA---ANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHH---HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467889999999999999999 68999999999999999999999999999999998764
No 14
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.7e-14 Score=113.55 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=56.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEH-FLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH-~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...+|+|+.|+..++.+|+.||..+ ..+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 3466788999999999999999955 44599999999999999999999999999999999876
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=1.3e-13 Score=108.42 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=56.5
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYA---ANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 34567889999999999999999 78999999999999999999999999999999998763
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=108.34 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=55.7
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQ---ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4567889999999999999999 68999999999999999999999999999999998763
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.4e-13 Score=104.17 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFR---QKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 36788999999999999999 7899999999999999999999999999999999764
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=107.99 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=56.1
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQ---KTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567889999999999999998 89999999999999999999999999999999998763
No 19
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=110.41 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=56.4
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+.+|+|+.|+..++.+|+.+|. .+|||+..++..||.++||++.||.+||+|+|.|.++.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYL---LDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHH---HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45677889999999999999999 67999999999999999999999999999999998763
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.42 E-value=1.4e-13 Score=105.34 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=52.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFN---ENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 356789999999999999999 7899999999999999999999999999999999765
No 21
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.42 E-value=2.1e-13 Score=108.36 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=56.7
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYA---TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHH---HTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh---hCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 45677889999999999999999 78999999999999999999999999999999998764
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=108.20 Aligned_cols=60 Identities=18% Similarity=0.437 Sum_probs=55.9
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFD---INNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHH---HCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---HCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhh
Confidence 34667889999999999999998 7899999999999999999999999999999999866
No 23
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=106.97 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=55.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFD---ANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---cCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4567889999999999999999 78999999999999999999999999999999998763
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.42 E-value=1.7e-13 Score=104.55 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=53.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFY---KENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 46789999999999999999 7899999999999999999999999999999999865
No 25
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=109.66 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=56.6
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFE---KQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 35567889999999999999999 78999999999999999999999999999999998764
No 26
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=2.1e-13 Score=107.18 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=55.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+++|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFE---TQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---cCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 3456788999999999999998 78999999999999999999999999999999998763
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.41 E-value=2.1e-13 Score=110.04 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=56.0
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++.+|+|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFE---RTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 45667889999999999999998 68999999999999999999999999999999998764
No 28
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=106.07 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=54.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
+|+|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFR---VNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 46789999999999999998 89999999999999999999999999999999998764
No 29
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=108.68 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=56.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
..+|+|+.|+..++.+|+.||. .+|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFA---INHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4567889999999999999999 789999999999999999999999999999999987743
No 30
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=3.9e-13 Score=108.35 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=57.2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++..-
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFE---RTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 4567889999999999999998 8999999999999999999999999999999999887554
No 31
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.40 E-value=2.5e-13 Score=104.81 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=54.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFL---FNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 356789999999999999999 78999999999999999999999999999999998763
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.40 E-value=2.7e-13 Score=104.14 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=51.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQ---KQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 456789999999999999998 7899999999999999999999999999999999876
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=100.85 Aligned_cols=56 Identities=29% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW 414 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~ 414 (453)
+|+|+.|+..+..+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.+
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFK---QQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46788999999999999998 899999999999999999999999999999999864
No 34
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.39 E-value=4.5e-13 Score=107.26 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=57.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
+..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFR---QQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34567788999999999999999 7899999999999999999999999999999999876443
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.38 E-value=4.1e-13 Score=102.46 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=49.6
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFS---RTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHH---cCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 467899999999999998 78999999999999999999999999999999998763
No 36
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=4.5e-13 Score=107.85 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=55.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk 64 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFA---KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhH
Confidence 34667889999999999999999 7899999999999999999999999999999999765
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.37 E-value=5.5e-13 Score=104.43 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=55.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFL---QGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 357789999999999999998 89999999999999999999999999999999998763
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.37 E-value=6.4e-13 Score=108.03 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=56.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 354 QVWRPIRGLPETSVGILRSWLFE-HFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~e-H~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
..+|+|+.|+..++..|+.+|.. |+.+|||+..++..||..+||++.||.+||+|+|.++++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45678899999999999999883 456999999999999999999999999999999999865
No 39
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=107.19 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=56.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQ---RQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHH---HSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998 7899999999999999999999999999999999876
No 40
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.36 E-value=1.1e-12 Score=105.04 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=57.1
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
+..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFL---FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 45667889999999999999999 789999999999999999999999999999999987654
No 41
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.36 E-value=6.9e-13 Score=103.86 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=54.4
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFK---QQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 46788999999999999999 78999999999999999999999999999999998763
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=2.7e-13 Score=106.02 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=55.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQ---RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHT---TCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 457789999999999999998 79999999999999999999999999999999997653
No 43
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.36 E-value=5.4e-13 Score=104.63 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 59 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHH---HCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhH
Confidence 56788999999999999999 7899999999999999999999999999999999876
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=103.00 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=55.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQ---KTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 34567789999999999999998 7899999999999999999999999999999999876
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.5e-12 Score=102.92 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=53.3
Q ss_pred CCCCCCChhHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 357 RPIRGLPETSVGILRSWLFEHFL-HPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~-nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++|+.|+..++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFN---KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH---SSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 4678899999999999998 6 9999999999999999999999999999999998763
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.2e-13 Score=105.22 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=53.3
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+.|+.|++.++.+|+.||. .+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFC---RNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHH---HSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCccCCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 34578899999999999998 7899999999999999999999999999999999876
No 47
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.32 E-value=8.6e-13 Score=109.68 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=57.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFH---KQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH---cCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34567889999999999999999 7899999999999999999999999999999999877543
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=98.71 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 T~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFL---RQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH---hcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4689999999999998 7899999999999999999999999999999999875
No 49
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.31 E-value=1.5e-12 Score=105.40 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=52.7
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFH---TNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcccCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3567789999999999999999 78999999999999999999999999999999998764
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=2.1e-12 Score=102.34 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=53.1
Q ss_pred CCCCCCChhHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 357 RPIRGLPETSVGILRSWLFEHFL-HPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~-nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++|+.|+..++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~---~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFN---KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHH---HTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999997 5 8999999999999999999999999999999998763
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=100.99 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=54.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.++.|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYL---KNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 456789999999999999999 7899999999999999999999999999999999876
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=2.2e-12 Score=107.14 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=56.7
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhhchhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTG---------------LTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TG---------------LS~sQVsNWFiNaR~Rl~Kpm 417 (453)
+..+|+|..|++.++.+|+.||. .+|||+..++..||..+| |+..||.+||+|+|.|.++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~---~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFN---ENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999 699999999999999999 999999999999999987643
No 53
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.29 E-value=2.4e-12 Score=105.48 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=53.1
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 34567889999999999999998 8999999999999999999999999999999999866
No 54
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=115.00 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=55.9
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+.+|+|+.|+..++.+|+.||. .+|||+..++..||..+||++.||.+||+|+|.|.+|
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFE---KNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567889999999999999999 6899999999999999999999999999999999876
No 55
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=102.04 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=52.4
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 357 RPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
++++.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFA---QNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHH
T ss_pred CCCccCCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHH
Confidence 4567799999999999999 7899999999999999999999999999999999765
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=102.37 Aligned_cols=54 Identities=22% Similarity=0.509 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 362 LPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 362 Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
-+++++..|+.+|. .+|||+..++..||..|||+..||.+||+|+|.|+++..+
T Consensus 11 ~~~~Ql~~LE~~F~---~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 11 KTKEQIAHLKASFL---QSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp CCHHHHHHHHHHHH---GGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 37899999999999 8999999999999999999999999999999999887654
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.28 E-value=2.5e-12 Score=116.00 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=53.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.||. .+|||+..++..||..+||+..||.+||+|+|+|.++.
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFK---ENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 4567889999999999999999 67999999999999999999999999999999998764
No 58
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=106.65 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=57.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHH
Q 012938 355 VWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEMY 422 (453)
Q Consensus 355 ~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~ 422 (453)
.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++..++-+.
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~ 89 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFV---RTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYY 89 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHH
Confidence 446788999999999999998 78999999999999999999999999999999999887655443
No 59
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=4.1e-12 Score=105.90 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=53.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFH---FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 4567789999999999999998 89999999999999999999999999999999998763
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=7.6e-12 Score=104.35 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+.|+..++.+|+.||. .+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 15 ~k~~t~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFL---NSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 45799999999999998 7899999999999999999999999999999998654
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.25 E-value=5.7e-12 Score=102.74 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=55.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFL--HPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~--nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...+|+|+.|+..++..|+ -|.+++- +|||+..++..||..+||++.||.+||+|+|.++++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3466788999999999999 5776433 999999999999999999999999999999999865
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=96.18 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+.++.++++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYA---LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34567999999999998 8999999999999999999999999999999999764
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.21 E-value=1.2e-11 Score=110.55 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=53.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
++.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFG---EHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCccHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 34567889999999999999999 7999999999999999999999999999999999876
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=101.79 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=50.5
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+++.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 16 k~k~~t~~Ql~~Le~~F~---~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFL---KSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 345699999999999999 7899999999999999999999999999999988654
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.19 E-value=1.6e-11 Score=111.01 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=53.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
+.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.+|.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFM---ENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667889999999999999999 78999999999999999999999999999999998763
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=112.33 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=50.0
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFL---KCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp ---------CCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred ccCCCCceeccHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 45667889999999999999999 78999999999999999999999999999999998763
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.2e-11 Score=102.50 Aligned_cols=66 Identities=23% Similarity=0.134 Sum_probs=58.6
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQT---------------------GLTKNQVSNWFINARV 411 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~T---------------------GLS~sQVsNWFiNaR~ 411 (453)
++.+|.|+.|++.++.+|+.+|. .+|||+.++|..||..+ +|+..+|.+||+|+|.
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~---~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYD---RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 35677889999999999999999 89999999999999999 7999999999999999
Q ss_pred hhchhhHHHH
Q 012938 412 RLWKPMIEEM 421 (453)
Q Consensus 412 Rl~Kpmi~el 421 (453)
|.++..-.++
T Consensus 81 k~kr~~~~~~ 90 (102)
T 2da6_A 81 EEAFRQKLAM 90 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHhhh
Confidence 9876544333
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=3.1e-11 Score=97.08 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=55.9
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFL-HPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~-nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+.++|+|+.|+.++..+|+..|. . +|||+.++++.||.+|||++.+|..||+|+|.-++.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~---~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIH---DVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHH---HHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCccCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 46788999999999999999999 7 999999999999999999999999999999987654
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=1.9e-11 Score=97.51 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCCCCCChhHHHHHHHHH-HhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 357 RPIRGLPETSVGILRSWL-FEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf-~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
++++.++..+..+|+..| . .++||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~---~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVS---VTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHH---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 345667888899999999 7 89999999999999999999999999999999998764
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.14 E-value=3.5e-11 Score=101.93 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=52.5
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQ------------------TG---LTKNQVSNWFINARV 411 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~------------------TG---LS~sQVsNWFiNaR~ 411 (453)
+..+|+|+.|+..++.+|+.+|. .+|||+..+|..||.. +| |+..||.+||+|+|.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~---~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYE---RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 45567889999999999999999 8999999999999999 88 999999999999999
Q ss_pred hhchhh
Q 012938 412 RLWKPM 417 (453)
Q Consensus 412 Rl~Kpm 417 (453)
+.++..
T Consensus 84 k~k~k~ 89 (99)
T 1lfb_A 84 EEAFRH 89 (99)
T ss_dssp TTSCCC
T ss_pred HHHHhc
Confidence 976543
No 71
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.11 E-value=5.8e-11 Score=94.57 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
-++..++..|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 10 ~~t~~ql~~LE~~F~---~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 10 HMSHTQVIELERKFS---HQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 468899999999998 78999999999999999999999999999999998764
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.11 E-value=3.6e-11 Score=108.32 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=55.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 354 QVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 354 q~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
+.+|+|+.|+..++.+|+.+|. .+|||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~---~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFL---KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTT---TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 4567889999999999999998 8999999999999999999999999999999999765
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.01 E-value=2.2e-10 Score=90.47 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 365 TSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 365 ~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
.+..+|+..|.. .++||+..++..||+++||++.||.+||+|+|.+.++
T Consensus 10 ~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 457899999941 5899999999999999999999999999999999775
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.94 E-value=5.7e-10 Score=106.82 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=52.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTG---------------------LTKNQVSNWFINARV 411 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TG---------------------LS~sQVsNWFiNaR~ 411 (453)
++.+|.|..|++.++.+|+.||. .+|||+..+|..||..+| ||..||.|||+|+|+
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~---~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYD---RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 45677889999999999999999 799999999999999988 899999999999998
Q ss_pred hh
Q 012938 412 RL 413 (453)
Q Consensus 412 Rl 413 (453)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 75
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.90 E-value=7.9e-10 Score=108.50 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=49.5
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW 414 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~ 414 (453)
+..|.+.++..|+.+|. .||||+..+|.+||++|||++.||++||+|+|+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~---~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFR---RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHh---cCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 35689999999999998 789999999999999999999999999999999864
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.87 E-value=5.6e-10 Score=104.76 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=52.7
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhh
Q 012938 353 RQVWRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTG---------------------LTKNQVSNWFINARV 411 (453)
Q Consensus 353 rq~~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TG---------------------LS~sQVsNWFiNaR~ 411 (453)
++.+|.|+.|++.++.+|+.+|. .+|||+..+|..||..++ ||..||.+||+|+|+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~---~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYE---RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHH---HHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 34567889999999999999999 689999999999999999 999999999999999
Q ss_pred hhch
Q 012938 412 RLWK 415 (453)
Q Consensus 412 Rl~K 415 (453)
+.+.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9763
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.2e-09 Score=84.94 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 012938 364 ETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVR 412 (453)
Q Consensus 364 k~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~R 412 (453)
++++.+|++.|. .||||+.+++..||..+||++..|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~---~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYA---MNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 677999999999 8999999999999999999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.69 E-value=0.0017 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhhhhchhhHH
Q 012938 400 NQVSNWFINARVRLWKPMIE 419 (453)
Q Consensus 400 sQVsNWFiNaR~Rl~Kpmi~ 419 (453)
.||..||+|+|.|.++...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999998886665
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.16 E-value=0.06 Score=43.32 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 012938 363 PETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFIN 408 (453)
Q Consensus 363 pk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiN 408 (453)
++...++|+.+|. .|-...+++...|+.+++|+..||..||.-
T Consensus 14 ~p~~~e~L~~Yy~---~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWA---AHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHH---HTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHH---HhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 4455689999999 557789999999999999999999999964
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=71.64 E-value=2.9 Score=33.06 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=41.3
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
..||+..+.+|...|++ .|. -.++|..+|++...|.++...+|.++++.+-
T Consensus 36 ~~L~~~~r~vl~l~~~~----g~s----~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYR----GWS----TAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp HTSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999876663 332 5789999999999999999999999877553
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.68 E-value=7.1 Score=32.24 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=37.2
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARV 411 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~ 411 (453)
+|+.|+.+.+..+-.++. .++.++ ...+|+..|++...|.+|..+.+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~---~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVE---ENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHH---HCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHH---HCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 567899999877767765 346665 346899999999999999877654
No 82
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=66.41 E-value=15 Score=30.43 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHHHHhh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEMYREEF 426 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~~e~~ 426 (453)
.||+..+.++...|...-..++. -.++|..+|+|...|.+....+++++++.+..+..++-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s----~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998877521112332 578999999999999999999999999888766655443
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.71 E-value=3.6 Score=30.09 Aligned_cols=50 Identities=14% Similarity=-0.014 Sum_probs=39.4
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
..||+....+|...|.+ .++ -.++|...|++...|.+|...++.++++.+
T Consensus 14 ~~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 45899999999877652 333 468999999999999999999999987654
No 84
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.70 E-value=9.3 Score=28.77 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=41.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc-hhhHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW-KPMIEE 420 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~-Kpmi~e 420 (453)
..||+....+|...|+-.-..++. -.++|..+|++...|.+|...++.+++ ..+..+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s----~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~ 66 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHT----LEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 66 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HhCCHHHHHHHHHHHhcccCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHH
Confidence 458999999998776400002332 458999999999999999999999998 555433
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.37 E-value=13 Score=30.67 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
.||+..+.++. .++ ..|+ -.++|..+|++...|.++...+|+++++.+-
T Consensus 109 ~L~~~~r~v~~-~~~----~g~s----~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI----RGYS----YREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHT----TTCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH----cCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998 433 3443 5789999999999999999999999876553
No 86
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.55 E-value=12 Score=29.42 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEE 420 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~e 420 (453)
..||+....+|...|+-.-..++. -..+|..+|+|...|.+|...++.++++.+...
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s----~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKT----LEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred HhCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999998776510013333 568999999999999999999999998766443
No 87
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=54.71 E-value=13 Score=32.81 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=41.5
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
..||+....+|...|. ..++ -.++|..+|++...|.++...+|.++++.+
T Consensus 186 ~~L~~~~r~vl~l~~~----~g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY----EELP----AKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT----SCCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh----cCCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4589999999988765 3443 568999999999999999999999997754
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.28 E-value=3.5 Score=30.78 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
.||+....+|...|.-.-...+. -.++|..+|+|...|.++...++.++++.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58899999998876200012332 4679999999999999999999999977554
No 89
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=51.75 E-value=13 Score=31.25 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
.||+....++...|.+ .++ -.++|..+|+|...|.+|...+|.++++.+
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877662 332 478999999999999999999999987655
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.61 E-value=20 Score=26.22 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=41.7
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHH
Q 012938 357 RPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEE 420 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~e 420 (453)
.....|++....+|..+ . ..+ .-.++|...|++...|.+++...+.++...-..+
T Consensus 7 ~~~~~L~~~e~~il~~~-~----~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 61 (74)
T 1fse_A 7 QSKPLLTKREREVFELL-V----QDK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ 61 (74)
T ss_dssp -CCCCCCHHHHHHHHHH-T----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred CCCCCCCHHHHHHHHHH-H----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 34567999999999774 3 233 2467999999999999999999999886554433
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=50.26 E-value=14 Score=27.00 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFIN 408 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiN 408 (453)
++.|+.+.+......+.. .++.......+|++.|++..+|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888876655554431 2221122678999999999999999654
No 92
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=49.59 E-value=20 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
.||+..+.+|...+.+ .++ -.++|..+|++...|.++...+|.++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788888898776652 333 467999999999999999999999987644
No 93
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.67 E-value=17 Score=23.93 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR 410 (453)
..|+.+....+...+. ..+. ...+|+.+|++...|.+|....+
T Consensus 4 ~~l~~~~~~~i~~~~~----~g~s----~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL----LNVS----LHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHH----TTCC----HHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHH----cCCC----HHHHHHHHCcCHHHHHHHHhhHH
Confidence 3567766544434444 2232 66899999999999999986543
No 94
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=45.58 E-value=51 Score=25.75 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 012938 356 WRPIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFIN 408 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiN 408 (453)
+++++.|+.+.+...-.++.. ..+ ...+|+.+|++...|.+|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~----g~s----~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD----GES----KASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH----TCC----HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CCC----HHHHHHHHCcCHHHHHHHHHH
Confidence 345667888875444344432 121 568899999999999999743
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.28 E-value=24 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHH
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEMY 422 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~ 422 (453)
.||+....+|..+ . ..+. -.++|...|++...|.++...++.+++..-..++.
T Consensus 16 ~L~~~e~~vl~l~-~----~g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 16 TLSERERQVLSAV-V----AGLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HHCHHHHHHHHHH-T----TTCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hCCHHHHHHHHHH-H----cCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3678888888664 3 2333 35899999999999999999999999766554443
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.85 E-value=15 Score=30.60 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPM 417 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpm 417 (453)
.||+....++...|.+ .++ -.++|..+|++...|.++...+|.++++.+
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4889999999877652 333 478999999999999999999999987665
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.78 E-value=19 Score=27.96 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=42.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEMY 422 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~ 422 (453)
..|++....+|..+ . ..+ .-.++|..+|++...|.++..+++.++......++.
T Consensus 20 ~~Lt~~e~~vl~l~-~----~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 20 NQLTPRERDILKLI-A----QGL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GGSCHHHHHHHHHH-T----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-H----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 35889999999774 3 233 257899999999999999999999998766555443
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.48 E-value=26 Score=30.12 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=37.4
Q ss_pred CCCCCCCChhHHHHHHHHH-HhhcCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhh
Q 012938 356 WRPIRGLPETSVGILRSWL-FEHFLHPYPNDSEKQLLAS-QT--GLTKNQVSNWFINAR 410 (453)
Q Consensus 356 ~R~Rr~Lpk~~~~iLraWf-~eH~~nPYPS~eeK~~LAk-~T--GLS~sQVsNWFiNaR 410 (453)
.++|..|+-+++..+..|+ . .||-.+..+....|. +. +++...|+.|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~---~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQ---LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHS---SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4577889999999999998 4 567666443333222 67 789999999987643
No 99
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=41.15 E-value=46 Score=27.19 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 358 PIRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 358 ~Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
+...|++....+|..++. .+. -.++|..+|++...|.++..+.+.++.-.
T Consensus 31 ~~~~Lt~re~~Vl~l~~~-----G~s----~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAE-----GFL----VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSSCCHHHHHHHHHHHH-----TCC----HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 356799999999966543 222 37899999999999999999999998443
No 100
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=40.54 E-value=41 Score=26.48 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 012938 366 SVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINA 409 (453)
Q Consensus 366 ~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNa 409 (453)
.+..+..|+.+|+..|-++ ...||...|+++..+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4567778999998885566 5668999999999988888754
No 101
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=38.72 E-value=11 Score=32.27 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.||+....+|...+.+. .+| .++|..+|++...|.++...+|.++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 48999999998776643 222 4689999999999999999999998764
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.02 E-value=38 Score=26.95 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
..|++....+|... .+ .+. -.++|..+|++...|.++..+++.++...
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46899999999875 42 232 47899999999999999999999998654
No 103
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.87 E-value=41 Score=26.24 Aligned_cols=52 Identities=23% Similarity=0.148 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEE 420 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~e 420 (453)
..|++....+|..+ .+ .+. -.++|..+|++...|.++..+++.++......+
T Consensus 28 ~~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 79 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AK----GYS----NQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 (91)
T ss_dssp GGCCSHHHHHHHHH-HT----TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHH
T ss_pred hcCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHH
Confidence 46899999999764 42 333 247999999999999999999999986554333
No 104
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.56 E-value=49 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=23.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhhhhchhhH
Q 012938 388 KQLLASQTGLTKNQVSNWFINARVRLWKPMI 418 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi 418 (453)
...||+.+|++...|++|..+.+.+..-..+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~~~~~~~l 64 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKIDLFSLESL 64 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGGGCCHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHH
Confidence 5679999999999999999887643333333
No 105
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.21 E-value=64 Score=25.23 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=30.2
Q ss_pred CCCChhHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 012938 360 RGLPETSVGILRSWLFEHFLH-PYPNDSEKQLLASQTGLTKNQVSNWFINARV 411 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~n-PYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~ 411 (453)
+.|+.+.+...-..+. .. .+ ....+|+.+|++...|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~---~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYE---NSDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHT---TGGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHH---HcCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 5677777544433333 11 22 2678999999999999999865543
No 106
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.99 E-value=47 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45688888888888888887765
No 107
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=27.96 E-value=1.5e+02 Score=31.34 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHhhhhhhccCccchhhhhHHHHH
Q 012938 236 AEKQELHLRIAKL-------------ISLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQAM 293 (453)
Q Consensus 236 ~er~Elq~kkakL-------------l~mL~ev~~ry~qy~~qmq~v~ssFe~~aGlgaa~~ytalal~am 293 (453)
-+|..||.+.+|| -..|+|.+++.+--.+.+.+.+..- .|.|-|++..+.+.+|+..
T Consensus 358 ~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~ 427 (543)
T 1we3_A 358 YAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEEL 427 (543)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHH
Confidence 4678899999988 3688899999888888887777765 7889999877777666654
No 108
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=27.18 E-value=45 Score=22.19 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINA 409 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNa 409 (453)
...+|+.+|++...|..|+...
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHc
Confidence 5689999999999999998643
No 109
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.13 E-value=50 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHH
Q 012938 389 QLLASQTGLTKNQVSNWFINARVRLWKPMIEEMY 422 (453)
Q Consensus 389 ~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~ 422 (453)
.++|...|++...|.++..+.+.++...-..++.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~ 50 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTELL 50 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5899999999999999999999998765554443
No 110
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.96 E-value=13 Score=32.58 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW 414 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~ 414 (453)
..||+..+.+|...|.+ .+ .-.++|..+|++...|.+++..+|.+++
T Consensus 197 ~~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 197 EELDERERLIVYLRYYK----DQ----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 45888888898776652 22 2468999999999999999999998864
No 111
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=26.34 E-value=97 Score=32.03 Aligned_cols=57 Identities=12% Similarity=-0.043 Sum_probs=43.4
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhc-hhhHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLW-KPMIEE 420 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~-Kpmi~e 420 (453)
..||+..+.+|...|.-.-..++ .-..+|..+|+|...|+++...++++++ +++...
T Consensus 374 ~~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~~~ 431 (438)
T 1l9z_H 374 SKLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 431 (438)
T ss_pred HhCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhhHH
Confidence 46899999999776641111343 3678999999999999999999999998 555443
No 112
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=25.61 E-value=33 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|++|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 113
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.41 E-value=98 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchhhHHHHH
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKPMIEEMY 422 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kpmi~el~ 422 (453)
..||+..+.+|.-. .+ .++ -.++|..+|++...|.+...++|++++.....++.
T Consensus 196 ~~L~~~erevl~L~-~~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~ 249 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGNSIEAC 249 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 57999999999876 42 332 56899999999999999999999999887655554
No 114
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.27 E-value=34 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 115
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.18 E-value=1e+02 Score=24.36 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 012938 366 SVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINA 409 (453)
Q Consensus 366 ~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNa 409 (453)
.+..+..|+.+|...| ++ ...||...|+++..+...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678999998777 55 5678999999999988888754
No 116
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.15 E-value=36 Score=25.53 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998876
No 117
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.04 E-value=49 Score=30.04 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhchh
Q 012938 361 GLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWKP 416 (453)
Q Consensus 361 ~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~Kp 416 (453)
.|++..+.+| .|+.+ .+. -.++|...|++...|.+...|+++|+--.
T Consensus 175 ~Lt~~e~~vl-~~~~~----g~s----~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 175 MLSPREMLCL-VWASK----GKT----ASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp SCCHHHHHHH-HHHHT----TCC----HHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 4788888899 55552 332 46789999999999999999999998443
No 118
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.88 E-value=55 Score=24.68 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=14.5
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFIN 408 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiN 408 (453)
...||+.+|++...|++|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 345677777777777777766
No 119
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.65 E-value=1.5e+02 Score=24.99 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=31.1
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHH-HHHH------hCCChhhhhhhhhhhhh
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQL-LASQ------TGLTKNQVSNWFINARV 411 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~-LAk~------TGLS~sQVsNWFiNaR~ 411 (453)
.+.++.+....+..++.+ +|--+..+... |..+ ..++...|.+|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 345777777888888873 45555554333 3222 14788889988865544
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.39 E-value=35 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINARV 411 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR~ 411 (453)
...||+.+|++...|++|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999998766
No 121
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.02 E-value=1.1e+02 Score=23.84 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCC-------Chhhhhhhhhh
Q 012938 360 RGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGL-------TKNQVSNWFIN 408 (453)
Q Consensus 360 r~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGL-------S~sQVsNWFiN 408 (453)
+.++++....+..++. .+|.-+..+......+.|+ +...|.+|+..
T Consensus 74 ~~l~~~~~~~i~~~~~---~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKR---SSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTT---TCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHH---hCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3567767777777765 4566665554333323374 88889888753
No 122
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.48 E-value=93 Score=24.84 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 012938 366 SVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINA 409 (453)
Q Consensus 366 ~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNa 409 (453)
.+..+..|+.+|+..| ++ ...||...|+++..+...|.-.
T Consensus 8 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 3456678999888887 55 5678999999999988877643
No 123
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.04 E-value=43 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINARV 411 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR~ 411 (453)
...||+.+|++...|++|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987543
No 124
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.92 E-value=44 Score=24.25 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|++|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.24 E-value=1.5e+02 Score=23.41 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=31.6
Q ss_pred CCCCChhHHH-HHHHHHHhhcCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhh
Q 012938 359 IRGLPETSVG-ILRSWLFEHFLHPYPND-SEKQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 359 Rr~Lpk~~~~-iLraWf~eH~~nPYPS~-eeK~~LAk~TGLS~sQVsNWFiNaR 410 (453)
++.|+.+.+. +++..+..... |++. .....+|+..|++...|.+|..-.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~--~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGE--YDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccc--cccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3467877764 44433331111 2232 3567899999999999999976543
No 126
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.14 E-value=64 Score=29.23 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhhch
Q 012938 359 IRGLPETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFINARVRLWK 415 (453)
Q Consensus 359 Rr~Lpk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiNaR~Rl~K 415 (453)
...|++..+.+| .|+. ..+. -.++|..+|++...|.+...|+++|+--
T Consensus 171 ~~~Lt~~e~~vl-~~~~----~g~s----~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYL-RWIA----VGKT----MEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHH-HHHT----TTCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHH-HHHH----cCCC----HHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 346899999999 4444 2332 4678999999999999999999999843
No 127
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.06 E-value=46 Score=23.57 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINARV 411 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR~ 411 (453)
...||+.+|++...|++|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988765
No 128
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=21.00 E-value=1.1e+02 Score=32.41 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHHHHHHhhhhhhccCccchhhhhHHH
Q 012938 235 SAEKQELHLRIAKLI-------------SLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQ 291 (453)
Q Consensus 235 ~~er~Elq~kkakLl-------------~mL~ev~~ry~qy~~qmq~v~ssFe~~aGlgaa~~ytalal~ 291 (453)
.-||..||.+.+||. ..|+|.++|.+--.+-+.+.+..- .|.|-|++..+.+.+|+
T Consensus 358 ~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~ 426 (547)
T 1kp8_A 358 DYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLA 426 (547)
T ss_dssp HHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHH
Confidence 347888999999985 588999999988888888777765 78888887666555544
No 129
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.87 E-value=47 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 012938 388 KQLLASQTGLTKNQVSNWFINAR 410 (453)
Q Consensus 388 K~~LAk~TGLS~sQVsNWFiNaR 410 (453)
...||+.+|++...|+.|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 130
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.68 E-value=1.1e+02 Score=24.75 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 012938 363 PETSVGILRSWLFEHFLHPYPNDSEKQLLASQTGLTKNQVSNWFIN 408 (453)
Q Consensus 363 pk~~~~iLraWf~eH~~nPYPS~eeK~~LAk~TGLS~sQVsNWFiN 408 (453)
....+..+..|+.+|+..+. + ...||...|+++..+...|..
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~-~---~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEW-T---LARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCC-C---HHHHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCCC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 34456677899998877663 3 667899999999999988864
No 131
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=20.41 E-value=1.4e+02 Score=24.31 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCC-CCHHHHH----HHHHHhCCChhhhh-hhhhhhhhhh
Q 012938 357 RPIRGLPETSVGILRSWLFEHFLHPY-PNDSEKQ----LLASQTGLTKNQVS-NWFINARVRL 413 (453)
Q Consensus 357 R~Rr~Lpk~~~~iLraWf~eH~~nPY-PS~eeK~----~LAk~TGLS~sQVs-NWFiNaR~Rl 413 (453)
|.+..+..+.-..|-.|+.+...... |+..... .|+...|++.-.++ +|+.+...|.
T Consensus 68 r~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 68 TNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 34566778889999999987643222 6665443 56666777644454 8988877663
Done!