Your job contains 1 sequence.
>012939
MEIVRSQRSRTNTPNDSVSTLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKR
PEEMENLVRDLWKANMRHPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYR
FLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEE
VPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLT
PIVEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRM
QLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQ
KIISSTPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFE
AVHSSSCDAGINHPNQYFSDSHKILQPKVEIVI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012939
(453 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050522-471 - symbol:zgc:110727 "zgc:110727"... 928 3.4e-93 1
UNIPROTKB|E1BVW7 - symbol:PRIM2 "Uncharacterized protein"... 911 2.1e-91 1
UNIPROTKB|Q5ZM06 - symbol:PRIM2 "Uncharacterized protein"... 909 3.5e-91 1
UNIPROTKB|A0JNF4 - symbol:PRIM2 "Uncharacterized protein"... 907 5.7e-91 1
UNIPROTKB|F6XMH3 - symbol:PRIM2 "Uncharacterized protein"... 907 5.7e-91 1
MGI|MGI:97758 - symbol:Prim2 "DNA primase, p58 subunit" s... 892 2.2e-89 1
RGD|631433 - symbol:Prim2 "primase, DNA, polypeptide 2" s... 884 1.6e-88 1
UNIPROTKB|F1RZV4 - symbol:PRIM2 "Uncharacterized protein"... 881 3.2e-88 1
UNIPROTKB|P49643 - symbol:PRIM2 "DNA primase large subuni... 879 5.3e-88 1
UNIPROTKB|Q4V8C0 - symbol:Prim2 "DNA primase large subuni... 775 1.2e-81 2
FB|FBgn0259676 - symbol:DNApol-alpha60 "DNA polymerase al... 808 1.8e-80 1
POMBASE|SPBC17D11.06 - symbol:spp2 "DNA primase large sub... 783 7.9e-78 1
ASPGD|ASPL0000058321 - symbol:AN0260 species:162425 "Emer... 656 2.3e-64 1
WB|WBGene00004181 - symbol:pri-2 species:6239 "Caenorhabd... 610 1.7e-59 1
DICTYBASE|DDB_G0270442 - symbol:polA3 "DNA primase large ... 594 8.4e-58 1
SGD|S000001528 - symbol:PRI2 "Subunit of DNA primase" spe... 529 6.5e-51 1
CGD|CAL0005223 - symbol:PRI2 species:5476 "Candida albica... 463 6.4e-44 1
UNIPROTKB|E2R2T0 - symbol:PRIM2 "Uncharacterized protein"... 303 7.2e-27 1
UNIPROTKB|I3LTZ4 - symbol:I3LTZ4 "Uncharacterized protein... 110 1.5e-05 1
>ZFIN|ZDB-GENE-050522-471 [details] [associations]
symbol:zgc:110727 "zgc:110727" species:7955 "Danio
rerio" [GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 ZFIN:ZDB-GENE-050522-471 GO:GO:0003896 KO:K02685
PANTHER:PTHR10537 HOVERGEN:HBG008257 EMBL:BC095387 EMBL:AY398398
IPI:IPI00510199 RefSeq:NP_999947.1 UniGene:Dr.51156 STRING:Q6TGV8
GeneID:407653 KEGG:dre:407653 InParanoid:Q6TGV8 NextBio:20818521
Uniprot:Q6TGV8
Length = 508
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 195/444 (43%), Positives = 283/444 (63%)
Query: 21 LPLYRYAPQLEVRLEDFEVFAMDRLRVLK-----GISDALARGKRPEEMENLVRDL---W 72
L Y P + L +FE FA++RL++LK G+S + +++E L +
Sbjct: 23 LQFYGQPPLDNISLIEFETFAVERLKLLKTVENLGVSYVKTTDQYIKKLEAEFLSLNFPF 82
Query: 73 KANM---RHPEASEDVNK---DIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSS 126
+A + + P + + K D ISHF+LRL YC+TEDLR+WF+ E L+RYRF + SS
Sbjct: 83 RAEVDDRKVPGVTSEYEKRRKDHISHFILRLAYCQTEDLRRWFIQQEMDLFRYRFGILSS 142
Query: 127 EAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI-FYKVPFEEVPELV 185
+ K + + +L + +S E +N ++KL + S+ T + FY+VPF++ +LV
Sbjct: 143 KHKTEFLHKNNLKYETVSAEEKKNLRDKL--INSSYGLSGITLEEYDFYRVPFQDALDLV 200
Query: 186 AGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEA 245
R+VY+ G+AY+ +++V++V+ FR+ LSKAL +T R + Q +RL P++
Sbjct: 201 RTRKVYLLAGNAYIPQNEIVTIVLNDFRTRLSKALAVTARSLPAV---QSDERLQPLLSH 257
Query: 246 LSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLF 305
LS +Y+G DYS K G+IS++ +D L+ SFPLCMRHL LRE+HHL+HGGRMQ GLF
Sbjct: 258 LSHAYVGQDYSIQKNVGKISLEQIDPLSGKSFPLCMRHLHKALRENHHLRHGGRMQYGLF 317
Query: 306 LKGVGLRMEDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII- 363
LKG+GL +E A+ FW++EF + KV A++FDK YAYSIRH +GKEGKRTDYTPYSC K+I
Sbjct: 318 LKGIGLTLEQAMQFWRSEFVKGKVDADKFDKAYAYSIRHMFGKEGKRTDYTPYSCMKVIL 377
Query: 364 SSTPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423
S+ P GD+HGCP+RH E L+ L + + +++ V+ HYQLAC FE H
Sbjct: 378 SNPPSQGDYHGCPFRHSDPELLKQKLQSYKIAPGGINQILELVKGMHYQLACQKYFELTH 437
Query: 424 SSSCDAG--INHPNQYFSDSHKIL 445
S DAG +NHPNQYF++S K+L
Sbjct: 438 SVE-DAGFSLNHPNQYFTESQKLL 460
>UNIPROTKB|E1BVW7 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 GO:GO:0003896 GeneTree:ENSGT00390000009790
PANTHER:PTHR10537 OMA:KVDADKF EMBL:AADN02002690 EMBL:AADN02002686
EMBL:AADN02002687 EMBL:AADN02002688 EMBL:AADN02002689
IPI:IPI00818768 Ensembl:ENSGALT00000026244 ArrayExpress:E1BVW7
Uniprot:E1BVW7
Length = 509
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 196/443 (44%), Positives = 269/443 (60%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y+ P + L +FE FA+DRLR+LK + + ++ K + + L +L K
Sbjct: 25 SLQFYQEPPTESISLAEFESFAVDRLRLLKVVENLGVSYVKSGDAYKTKLEAELRKLKFP 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ +ED KD ISHF+LRL YC++E+LR+WFL E L+RYRF + ++ +
Sbjct: 85 YRALAEDDYDARRKDHISHFILRLAYCQSEELRRWFLQQEMDLFRYRFHELTDSLRQKFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKV-PFEEVPELVAGRRVYI 192
+ +L +AIS +L + +FYKV P ++ +L RRV+I
Sbjct: 145 DHVNLSFEAISEDLKNELSNELYMSTPGLSMS-KVKEQMFYKVRPLQDAVDLFRARRVFI 203
Query: 193 HKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLG 252
G A+V + + ++V+ +R +LSKAL LT R S Q +RL P++ LS SY+G
Sbjct: 204 KDGFAFVPLKDIDAIVLNNYRKSLSKALALTARSLPSI---QSDERLQPLLNHLSHSYVG 260
Query: 253 PDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLR 312
PDYS K G+IS++ +D L+ SFPLCMR L LRE+HHL+HGGRMQ GLFLKG+GL
Sbjct: 261 PDYSVQKNTGKISLEHIDALSVKSFPLCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLT 320
Query: 313 MEDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVG 370
+E AL FWK EF + KV A++FDK YAYSIRHNYGKEGKRTDYTPYSC KII S+ P G
Sbjct: 321 LEQALEFWKKEFIKGKVDADKFDKGYAYSIRHNYGKEGKRTDYTPYSCMKIIMSNPPSQG 380
Query: 371 DHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHSSSCDAG 430
D+HGCP+RH E L+ L V + +++ V+ HYQLAC FE H D G
Sbjct: 381 DYHGCPFRHSDPELLKQKLQSYKVPPSGVTQILELVKGMHYQLACQKYFELTHDVD-DIG 439
Query: 431 --INHPNQYFSDSHKILQPKVEI 451
+NHPNQYF++S +IL E+
Sbjct: 440 FSLNHPNQYFAESQRILSGGREV 462
>UNIPROTKB|Q5ZM06 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003896 "DNA primase activity" evidence=IDA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 GO:GO:0003896 eggNOG:COG2219
GeneTree:ENSGT00390000009790 HOGENOM:HOG000212154 KO:K02685
PANTHER:PTHR10537 CTD:5558 HOVERGEN:HBG008257 EMBL:AADN02002690
EMBL:AADN02002686 EMBL:AADN02002687 EMBL:AADN02002688
EMBL:AADN02002689 EMBL:AJ719578 EMBL:AJ851645 IPI:IPI00601618
RefSeq:NP_001012898.1 UniGene:Gga.2485 STRING:Q5ZM06
Ensembl:ENSGALT00000037013 GeneID:421878 KEGG:gga:421878
NextBio:20824588 Uniprot:Q5ZM06
Length = 508
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 195/442 (44%), Positives = 267/442 (60%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y+ P + L +FE FA+DRLR+LK + + ++ K + + L +L K
Sbjct: 25 SLQFYQEPPTESISLAEFESFAVDRLRLLKVVENLGVSYVKSGDAYKTKLEAELRKLKFP 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ +ED KD ISHF+LRL YC++E+LR+WFL E L+RYRF + ++ +
Sbjct: 85 YRALAEDDYDARRKDHISHFILRLAYCQSEELRRWFLQQEMDLFRYRFHELTDSLRQKFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
+ +L +AIS +L + +FYKV + +L RRV+I
Sbjct: 145 DHVNLSFEAISEDLKNELSNELYMSTPGLSMS-KVKEQMFYKVGLSDAVDLFRARRVFIK 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G A+V + + ++V+ +R +LSKAL LT R S Q +RL P++ LS SY+GP
Sbjct: 204 DGFAFVPLKDIDAIVLNNYRKSLSKALALTARSLPSI---QSDERLQPLLNHLSHSYVGP 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS++ +D L+ SFPLCMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSVQKNTGKISLEHIDALSVKSFPLCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + KV A++FDK YAYSIRHNYGKEGKRTDYTPYSC KII S+ P GD
Sbjct: 321 EQALEFWKKEFIKGKVDADKFDKGYAYSIRHNYGKEGKRTDYTPYSCMKIIMSNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHSSSCDAG- 430
+HGCP+RH E L+ L V + +++ V+ HYQLAC FE H D G
Sbjct: 381 YHGCPFRHSDPELLKQKLQSYKVPPSGVTQILELVKGMHYQLACQKYFELTHDVD-DIGF 439
Query: 431 -INHPNQYFSDSHKILQPKVEI 451
+NHPNQYF++S +IL E+
Sbjct: 440 SLNHPNQYFAESQRILSGGREV 461
>UNIPROTKB|A0JNF4 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 GO:GO:0003896 eggNOG:COG2219
GeneTree:ENSGT00390000009790 HOGENOM:HOG000212154 KO:K02685
OMA:EMTHNVD PANTHER:PTHR10537 CTD:5558 HOVERGEN:HBG008257
OrthoDB:EOG4XH00C EMBL:DAAA02054791 EMBL:DAAA02054792
EMBL:DAAA02054793 EMBL:DAAA02054794 EMBL:DAAA02054795
EMBL:DAAA02054796 EMBL:DAAA02054797 EMBL:DAAA02054798
EMBL:DAAA02054799 EMBL:BC126657 IPI:IPI00826278
RefSeq:NP_001073062.1 UniGene:Bt.63919 STRING:A0JNF4
Ensembl:ENSBTAT00000010434 GeneID:514682 KEGG:bta:514682
InParanoid:A0JNF4 NextBio:20871462 Uniprot:A0JNF4
Length = 506
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 186/435 (42%), Positives = 269/435 (61%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P V L +FE A+DR+++LK + + L+ K E+ ++ L +L K
Sbjct: 25 SLQFYLQPPSGNVSLTEFETLAIDRVKLLKSVENLGLSYMKGTEQYQSKLEAELRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E+ ED KD ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRESLEDEYEPRRKDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKIQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + +F +++ YK+PF E +L GR+VY+
Sbjct: 145 KDSHLQFEAISDEEKTVREQDIIASSSTFGGAQLDPESV-YKIPFAEALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 NGFAYVPHKDIVAIILNEFRTKLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQGNAGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + + ++FDK Y+Y+IRH+YGKEGKRTDYTPYSC KII ++TPG GD
Sbjct: 321 EQALQFWKQEFIRGNMDPDKFDKGYSYNIRHSYGKEGKRTDYTPYSCMKIILTNTPGQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
+HGCP+RH E LR L + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 YHGCPFRHSDPELLRQKLQAYKIPPAGISQILDLVKGTHYQVACQKFFEMTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
++HPNQ+F +S +IL
Sbjct: 441 LSHPNQFFFESQRIL 455
>UNIPROTKB|F6XMH3 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 GO:GO:0003896 GeneTree:ENSGT00390000009790
KO:K02685 OMA:EMTHNVD PANTHER:PTHR10537 CTD:5558 EMBL:AAEX03008410
Ensembl:ENSCAFT00000035673 RefSeq:XP_532185.2 GeneID:474950
KEGG:cfa:474950 Uniprot:F6XMH3
Length = 509
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/443 (42%), Positives = 271/443 (61%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD---ALARGKRP--EEMENLVRDLWKA 74
+L Y P + L +FE A+DR+++LK + + + +G P ++EN +R L K
Sbjct: 25 SLQFYLEPPSENISLIEFESLAIDRVKLLKAVENLGVSYVKGIEPYQSKLENEIRRL-KF 83
Query: 75 NMRHP--EASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRAL 132
+ R + E KD ISHF+LRL YC++EDLR+WF+ E L R+RF + + R
Sbjct: 84 SFRESLEDEYEPRRKDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKIRNF 143
Query: 133 MEEFDLPCKAISRTEFENAKEKLEQVARSF-DQPLPTADAIFYKVPFEEVPELVAGRRVY 191
+++ L +AIS E ++++ + S L YK+PF + +L GR+VY
Sbjct: 144 LKDSHLQFEAISDDEKSLREQEILASSPSLCGSKLDLDSESVYKIPFADALDLFRGRKVY 203
Query: 192 IHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYL 251
+ G AYV + +V++V+ +FR+ LSKAL LT R + Q +RL P++ LS SY
Sbjct: 204 LEGGFAYVPLRDIVAIVLNEFRAKLSKALALTARSLPAV---QSDERLQPLLNHLSHSYT 260
Query: 252 GPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGL 311
G DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL
Sbjct: 261 GQDYSIQKNAGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGL 320
Query: 312 RMEDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGV 369
+E AL FWK EF + K+ ++FDK YAY+IRH++GKEGKRTDYTP+SC KII ++ PG
Sbjct: 321 TLEQALQFWKQEFIRGKMDPDKFDKGYAYNIRHSFGKEGKRTDYTPFSCLKIILTNPPGQ 380
Query: 370 GDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCD 428
GD+HGCP+RH E L+ L + + ++D V+ HYQ+AC FE +H+ C
Sbjct: 381 GDYHGCPFRHSDPELLKQKLQSYKISPAGINQILDLVKGTHYQVACQKYFEMIHNVDDCG 440
Query: 429 AGINHPNQYFSDSHKILQPKVEI 451
+NHPNQ+F +S +IL +I
Sbjct: 441 FSLNHPNQFFFESQRILNGSKDI 463
>MGI|MGI:97758 [details] [associations]
symbol:Prim2 "DNA primase, p58 subunit" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003896 "DNA
primase activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 MGI:MGI:97758 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0003896 GO:GO:0030894 eggNOG:COG2219
GeneTree:ENSGT00390000009790 HOGENOM:HOG000212154 KO:K02685
OMA:EMTHNVD PANTHER:PTHR10537 CTD:5558 HOVERGEN:HBG008257
EMBL:D13545 EMBL:D17385 EMBL:AK076095 EMBL:AK077760 EMBL:AK153970
EMBL:BC019500 IPI:IPI00114069 PIR:C46642 RefSeq:NP_032948.1
UniGene:Mm.27705 ProteinModelPortal:P33610 SMR:P33610 IntAct:P33610
STRING:P33610 PhosphoSite:P33610 PaxDb:P33610 PRIDE:P33610
Ensembl:ENSMUST00000027312 GeneID:19076 KEGG:mmu:19076
UCSC:uc007anq.1 InParanoid:P33610 OrthoDB:EOG4XH00C NextBio:295610
Bgee:P33610 CleanEx:MM_PRIM2 Genevestigator:P33610
GermOnline:ENSMUSG00000026134 Uniprot:P33610
Length = 505
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 181/435 (41%), Positives = 270/435 (62%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A DR+++LK I + ++ K E+ ++ L ++ K
Sbjct: 25 SLQFYLQPPTENISLTEFENLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S ++++ YKVPF + +L GR+VY+
Sbjct: 145 KDSHLHFEAISDEEKTLREQDIMASSPSLSGIKLESESV-YKVPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQKNTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII ++ PG GD
Sbjct: 321 EQALQFWKQEFIRGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPGQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
+HGCP+RH E L+ + + + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 YHGCPFRHSDAELLKQKMQSYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
+NHPNQ+F +S +IL
Sbjct: 441 LNHPNQFFFESQRIL 455
>RGD|631433 [details] [associations]
symbol:Prim2 "primase, DNA, polypeptide 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003896 "DNA primase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030894 "replisome" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR007238 InterPro:IPR016558
Pfam:PF04104 PIRSF:PIRSF009449 RGD:631433 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 GO:GO:0003896
GO:GO:0030894 eggNOG:COG2219 GeneTree:ENSGT00390000009790
HOGENOM:HOG000212154 OMA:EMTHNVD PANTHER:PTHR10537
HOVERGEN:HBG008257 OrthoDB:EOG4XH00C EMBL:AJ011607 IPI:IPI00209391
UniGene:Rn.11846 STRING:O89044 PRIDE:O89044
Ensembl:ENSRNOT00000016828 UCSC:RGD:631433 InParanoid:O89044
ArrayExpress:O89044 Genevestigator:O89044
GermOnline:ENSRNOG00000012486 Uniprot:O89044
Length = 507
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 180/435 (41%), Positives = 268/435 (61%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A DR+++LK I + ++ K E+ ++ L ++ K
Sbjct: 25 SLQFYLQPPTENISLTEFESLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S ++++ YKVPF + +L GR+VY+
Sbjct: 145 KDTHLHFEAISDEEKTLREQDIMASSPSLSGVRWESESV-YKVPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLSHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQKSTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII ++ P GD
Sbjct: 321 EQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
HGCP+RH E L+ + + + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 FHGCPFRHSDAELLKQKMQTYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
+NHPNQ+F +S +IL
Sbjct: 441 LNHPNQFFFESQRIL 455
>UNIPROTKB|F1RZV4 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 GO:GO:0003896 GeneTree:ENSGT00390000009790
OMA:EMTHNVD PANTHER:PTHR10537 EMBL:CT963091 EMBL:CU407066
EMBL:CU467664 EMBL:CU468522 Ensembl:ENSSSCT00000001665
Uniprot:F1RZV4
Length = 506
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 182/435 (41%), Positives = 266/435 (61%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A +RL++LK + + ++ K E+ ++ L +L K +
Sbjct: 25 SLQFYLQPPSENISLTEFENLAFERLKLLKSVENLGVSYVKGTEQYQSKLEAELRKRAII 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 FKENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFHILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S +++ YK+PF + +L GRRVY+
Sbjct: 145 KDSHLQFEAISDEEKTLREQDIIASSPSLSGTQLELESV-YKIPFADALDLFRGRRVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRTKLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSAQGNAGKISLDQIDSLSTKSFPPCMRQLHRALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTPYSC KII ++ P GD
Sbjct: 321 EQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPYSCMKIILTNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
+HGCP+RH E LR L + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 YHGCPFRHSDPELLRQKLQAYKISPTGIAQILDLVKGTHYQVACQKYFEVTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
++HPNQ+F +S KIL
Sbjct: 441 LSHPNQFFFESQKIL 455
>UNIPROTKB|P49643 [details] [associations]
symbol:PRIM2 "DNA primase large subunit" species:9606 "Homo
sapiens" [GO:0003896 "DNA primase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030894 "replisome"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 Reactome:REACT_115566 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0046872 GO:GO:0003677 GO:GO:0000082
GO:GO:0051539 GO:GO:0006270 GO:GO:0000216 GO:GO:0000084
GO:GO:0000722 GO:GO:0003896 Reactome:REACT_383 GO:GO:0006271
GO:GO:0032201 GO:GO:0030894 eggNOG:COG2219 HOGENOM:HOG000212154
KO:K02685 PANTHER:PTHR10537 EMBL:X74331 EMBL:AL121975 EMBL:AL162579
EMBL:BC017833 EMBL:BC064931 IPI:IPI00027705 IPI:IPI00644817
PIR:S45631 RefSeq:NP_000938.2 UniGene:Hs.654580 PDB:3L9Q PDB:3Q36
PDBsum:3L9Q PDBsum:3Q36 ProteinModelPortal:P49643 SMR:P49643
DIP:DIP-36438N IntAct:P49643 MINT:MINT-3017566 STRING:P49643
PhosphoSite:P49643 DMDM:51338777 PaxDb:P49643 PRIDE:P49643
DNASU:5558 GeneID:5558 KEGG:hsa:5558 UCSC:uc003pdv.1
UCSC:uc003pdx.3 CTD:5558 GeneCards:GC06P057179 HGNC:HGNC:9370
MIM:176636 neXtProt:NX_P49643 PharmGKB:PA162400108
HOVERGEN:HBG008257 InParanoid:P49643 EvolutionaryTrace:P49643
GenomeRNAi:5558 NextBio:21538 CleanEx:HS_PRIM2
Genevestigator:P49643 GermOnline:ENSG00000146143 Uniprot:P49643
Length = 509
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 184/435 (42%), Positives = 267/435 (61%)
Query: 21 LPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMRH 78
L Y P + L +FE A+DR+++LK + + ++ K E+ ++ L +L K +
Sbjct: 26 LQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSY 85
Query: 79 PEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALME 134
E ED +D ISHF+LRL YC++E+LR+WF+ E L R+RF + + + ++
Sbjct: 86 RENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLK 145
Query: 135 EFDLPCKAISRTEFENAKEKLEQVARSFD-QPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
+ L +AIS E + +E+ E VA S L YK+PF + +L GR+VY+
Sbjct: 146 DSQLQFEAISDEE-KTLREQ-EIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII S+ P GD
Sbjct: 321 EQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
+HGCP+RH E L+ L + + ++D V+ HYQ+AC FE +H+ C
Sbjct: 381 YHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
+NHPNQ+F +S +IL
Sbjct: 441 LNHPNQFFCESQRIL 455
>UNIPROTKB|Q4V8C0 [details] [associations]
symbol:Prim2 "DNA primase large subunit" species:10116
"Rattus norvegicus" [GO:0003896 "DNA primase activity"
evidence=IEA] InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 RGD:631433 GO:GO:0003896
GeneTree:ENSGT00390000009790 HOGENOM:HOG000212154 KO:K02685
PANTHER:PTHR10537 CTD:5558 HOVERGEN:HBG008257 UniGene:Rn.11846
EMBL:BC097454 IPI:IPI00778640 RefSeq:NP_001019933.1 STRING:Q4V8C0
Ensembl:ENSRNOT00000060452 GeneID:301323 KEGG:rno:301323
NextBio:648532 Genevestigator:Q4V8C0 Uniprot:Q4V8C0
Length = 484
Score = 775 (277.9 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 162/393 (41%), Positives = 241/393 (61%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A DR+++LK I + ++ K E+ ++ L ++ K
Sbjct: 25 SLQFYLQPPTENISLTEFESLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S ++++ YKVPF + +L GR+VY+
Sbjct: 145 KDTHLHFEAISDEEKTLREQDIMASSPSLSGVRWESESV-YKVPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLSHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQKSTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII ++ P GD
Sbjct: 321 EQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVD 404
HGCP+RH E L+ + + + + V D
Sbjct: 381 FHGCPFRHSDAELLKQKMQTYKIPASGISQVDD 413
Score = 63 (27.2 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 427 CDAGINHPNQYFSDSHKIL 445
C +NHPNQ+F +S +IL
Sbjct: 414 CGFSLNHPNQFFFESQRIL 432
>FB|FBgn0259676 [details] [associations]
symbol:DNApol-alpha60 "DNA polymerase alpha 60kD"
species:7227 "Drosophila melanogaster" [GO:0006260 "DNA
replication" evidence=IMP;NAS;IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=NAS;IDA;TAS] [GO:0003896 "DNA
primase activity" evidence=ISS;IMP;NAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0006261 "DNA-dependent
DNA replication" evidence=TAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IMP]
[GO:0001745 "compound eye morphogenesis" evidence=IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0000084 GO:GO:0003896 GO:GO:0003887
GO:GO:0001745 GO:GO:0005658 eggNOG:COG2219
GeneTree:ENSGT00390000009790 KO:K02685 PANTHER:PTHR10537
OMA:KVDADKF EMBL:AF291873 EMBL:AF160895 RefSeq:NP_652001.2
ProteinModelPortal:Q9VPH2 SMR:Q9VPH2 IntAct:Q9VPH2
MINT:MINT-4080873 STRING:Q9VPH2 PaxDb:Q9VPH2
EnsemblMetazoa:FBtr0078241 GeneID:44915 KEGG:dme:Dmel_CG5553
CTD:44915 FlyBase:FBgn0259676 OrthoDB:EOG4MSBDD PhylomeDB:Q9VPH2
GenomeRNAi:44915 NextBio:837819 Bgee:Q9VPH2 GermOnline:CG5553
Uniprot:Q9VPH2
Length = 533
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 167/438 (38%), Positives = 261/438 (59%)
Query: 23 LYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKR--PEEMENLVR-DLWKANMR-- 77
LY Y P +V +++FE A++RLR+L+ + A R R +E + +V DL + +R
Sbjct: 30 LYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSY 89
Query: 78 -----------HPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFL-LGS 125
H + +D +SHF+LRL YCR+EDL +WF++ E L+RY+F L S
Sbjct: 90 LRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSS 149
Query: 126 SEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI-FYKVPFEEVPEL 184
E K+ L E ++ + + K+ L + + Q + + + FYKVPF +V +L
Sbjct: 150 FEVKQFL-EANGFEIHPLTEAQKDEVKDGLYE--STVGQSVAKIELLDFYKVPFTQVLDL 206
Query: 185 VAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERD-RLTPIV 243
V GRR ++ G+AYV H +VSLV T+ + + + L + + + E D R++ +
Sbjct: 207 VRGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGLQAAK----TMVEDVEADERISRTL 262
Query: 244 EALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLG 303
+AL SY G DY+ ++ + I+ LDQL+++S PLCMR + +R +HH+KH GRMQ G
Sbjct: 263 KALHNSYTGRDYTVCRD-AAVPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYG 321
Query: 304 LFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII 363
LFLKG+G+ +ED+L FW+ EF++K+ A++F + Y Y+I HNYGK+G +YTPYSC KII
Sbjct: 322 LFLKGIGVALEDSLRFWREEFTKKMDADKFTRSYEYNIYHNYGKKGSMVNYTPYSCAKII 381
Query: 364 SSTPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423
G GD HGCPY++ + +L+ L G+ + A+++V+ V HYQ+ C F+ H
Sbjct: 382 KDVAGPGDCHGCPYKNMDQGSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTH 441
Query: 424 SSSCDAGINHPNQYFSDS 441
+S + INHPN YF +S
Sbjct: 442 NSPVEPSINHPNNYFEES 459
>POMBASE|SPBC17D11.06 [details] [associations]
symbol:spp2 "DNA primase large subunit Spp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003896
"DNA primase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IEA] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=NAS] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 PomBase:SPBC17D11.06 GO:GO:0005829 GO:GO:0046872
GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0000790 GO:GO:0000723 GO:GO:0007090 GO:GO:0003896
GO:GO:0006269 GO:GO:0005658 HOGENOM:HOG000212154 KO:K02685
PANTHER:PTHR10537 OMA:KVDADKF EMBL:AB027983 PIR:T39717
RefSeq:NP_596380.1 IntAct:O74761 STRING:O74761
EnsemblFungi:SPBC17D11.06.1 GeneID:2539933 KEGG:spo:SPBC17D11.06
OrthoDB:EOG4X9BRS NextBio:20801076 Uniprot:O74761
Length = 459
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 176/456 (38%), Positives = 267/456 (58%)
Query: 3 IVRSQRSRTNTPNDSVS---TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGK 59
+V ++ ++ +S+S L Y+ P E+ +E+FE +A+DRL VL I A+ R K
Sbjct: 9 VVEKNQNFSSASFESLSYPTRLNFYKKPPVSEISIEEFETWAIDRLVVLGEIESAMLRNK 68
Query: 60 RPEEMENLVRDL------WKANMRHP----EASEDVNKDIISHFVLRLVYCRTEDLRKWF 109
E+ +++ + +NM E+ KD SHF+LRL + R+++LR F
Sbjct: 69 TKNELNGIIKKILDKRLPMSSNMARTVKGNSLDEERRKDHYSHFILRLAFSRSDELRIRF 128
Query: 110 LSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVA-RSFDQPLPT 168
L E+ L+R+RF+ + ++A ++ D +++S+ E + EKL+ + R+ +
Sbjct: 129 LRAESTLFRFRFVNEETRERQAFIDSLDFQWESVSQEEKDVFYEKLQASSQRNIE----- 183
Query: 169 ADAIFYKVPFEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWT 228
+ F+KVPF +VP+LV R V++HKG+AYV + VSLVV +F NL KAL T +
Sbjct: 184 -NESFFKVPFFKVPDLVERRAVFVHKGYAYVPFSEQVSLVVEEFEENLKKALESTAK--- 239
Query: 229 STIREQERDRLTPIVEALSMSYLGPDYS-QTKEFGEISIKDLDQLARSSFPLCMRHLFDK 287
S R E DRL PI+ LS ++ P+ S + G I+ +D S FPLC +HL +
Sbjct: 240 SLPRLDEDDRLLPILNHLSKGFVAPESSIVAPKSGAITAGQVDSFV-SHFPLCAKHLHEV 298
Query: 288 LREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGK 347
L+ D HL+H GR+Q GLFLK +GL +++AL FW+ F+ V ++F+KEY Y+IRH YG
Sbjct: 299 LKRDKHLRHFGRLQYGLFLKDIGLSVDEALVFWRKSFTN-VTEDKFNKEYRYNIRHTYGL 357
Query: 348 EGKRTDYTPYSCQKIISSTP-GVGDHHGCPYRHFSEENLRAALGRMGVG--SRAMEDVVD 404
EG R +Y Y+CQ+I++ G GD HGCPYR +S NL +AL MG+ S +VV+
Sbjct: 358 EGNRKNYKGYNCQQILTGPQLGPGDAHGCPYRTYSVNNLVSALASMGIAPDSAGCREVVE 417
Query: 405 KVRNRHYQLACTLTFEAVHSS--SCDAGINHPNQYF 438
V+ RHY +ACT FE H + S + I+HP QYF
Sbjct: 418 AVKARHYHIACTRVFELTHPNVGSLEESIHHPLQYF 453
>ASPGD|ASPL0000058321 [details] [associations]
symbol:AN0260 species:162425 "Emericella nidulans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 EMBL:BN001308 GO:GO:0003896 EMBL:AACD01000005
eggNOG:COG2219 HOGENOM:HOG000212154 KO:K02685 OMA:EMTHNVD
PANTHER:PTHR10537 OrthoDB:EOG4X9BRS RefSeq:XP_657864.1
STRING:Q5BGS0 EnsemblFungi:CADANIAT00002464 GeneID:2876037
KEGG:ani:AN0260.2 Uniprot:Q5BGS0
Length = 500
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 162/429 (37%), Positives = 231/429 (53%)
Query: 21 LPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWK------A 74
L Y P E+ LE FE +A+DRL++L I R K E + L + A
Sbjct: 38 LNFYDTPPTAEITLEQFEQWAIDRLKILAEIEACSYRNKTAAETTAHITPLLQKFLPLSA 97
Query: 75 NMRHPEASEDVN------KDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEA 128
N P+ + D KD SHF+LRL + TEDLR+ F ET L+R+RF S
Sbjct: 98 NTSSPKGAADPRIKNERQKDHYSHFILRLAFSATEDLRRRFARAETMLFRFRFQADDSRE 157
Query: 129 KRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGR 188
+RA ++ +L +++ E E L VA + D +YKV +E VPELV R
Sbjct: 158 RRAFIDSLNLDWESVGEDERRELSEYL--VAATPGLRRSDEDT-WYKVDWERVPELVERR 214
Query: 189 RVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSM 248
V++ KG AYV + +S+++ +F + L +AL LT+R + R E DRL+PI+ LS
Sbjct: 215 SVFLSKGKAYVPEREQLSMIIAEFTARLERALELTSR---ALPRLDEDDRLSPILNHLSK 271
Query: 249 SYLGPD--YSQTKEFGE---ISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLG 303
++ + Y++ + F + I+ +D L++ FPLCMR L LR+++HLKH GR+Q
Sbjct: 272 NFGSAESVYTEGEGFVDGAPITAASIDPLSQH-FPLCMRSLHMSLRKNNHLKHFGRLQYT 330
Query: 304 LFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEG----KR-TDYTPYS 358
LFLKG+GL +E+ + FW+ F E F+ Y Y++RH YG G +R Y PYS
Sbjct: 331 LFLKGIGLSLEECILFWRQSFKGFTD-EEFNSRYKYNVRHAYGDVGGDINRRGRGYPPYS 389
Query: 359 CQKIISST-PGVGDHHGCPYRHFSEENLRAALGRMGVGSR-AMEDVVDKVRNRHYQLACT 416
CQKI+S T PG G HGCPYRHFS +NL L GV + + V + V Y +AC
Sbjct: 390 CQKILSDTNPGAGQTHGCPYRHFSVDNLIGLLQSTGVNDKDLLRGVREDVEKTRYHIACN 449
Query: 417 LTFEAVHSS 425
FE H +
Sbjct: 450 RVFEYTHKA 458
Score = 195 (73.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 51/144 (35%), Positives = 70/144 (48%)
Query: 319 FWKAEFSQKVGAERFDKEYAYS-IRHNYGKEGKRTDYTPYSCQKIISST-PGVGDHHGCP 376
F EF+ + +++ +AY + + + G+ Y PYSCQKI+S T PG G HGCP
Sbjct: 354 FTDEEFNSRY---KYNVRHAYGDVGGDINRRGR--GYPPYSCQKILSDTNPGAGQTHGCP 408
Query: 377 YRHFSEENLRAALGRMGVGSR-AMEDVVDKVRNRHYQLACTLTFEAVHSSSC-------D 428
YRHFS +NL L GV + + V + V Y +AC FE H +
Sbjct: 409 YRHFSVDNLIGLLQSTGVNDKDLLRGVREDVEKTRYHIACNRVFEYTHKAEIKRAKEDGS 468
Query: 429 AG------INHPNQYFSDSHKILQ 446
AG I HPN YF S+ + Q
Sbjct: 469 AGEIELDTIVHPNTYFKRSYLLKQ 492
>WB|WBGene00004181 [details] [associations]
symbol:pri-2 species:6239 "Caenorhabditis elegans"
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0043652
"engulfment of apoptotic cell" evidence=IMP] InterPro:IPR007238
InterPro:IPR016558 Pfam:PF04104 PIRSF:PIRSF009449 GO:GO:0009792
GO:GO:0006898 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0000910 GO:GO:0040035 GO:GO:0043652 GO:GO:0006997
GO:GO:0003896 GO:GO:0030894 EMBL:Z81137 PIR:G87948 PIR:T26114
RefSeq:NP_001251922.1 ProteinModelPortal:O02334 SMR:O02334
STRING:O02334 PaxDb:O02334 EnsemblMetazoa:W02D9.1a.1
EnsemblMetazoa:W02D9.1a.2 GeneID:173122 KEGG:cel:CELE_W02D9.1
UCSC:W02D9.1.1 CTD:173122 WormBase:W02D9.1 eggNOG:COG2219
GeneTree:ENSGT00390000009790 HOGENOM:HOG000212154 InParanoid:O02334
KO:K02685 OMA:EMTHNVD NextBio:878351 ArrayExpress:O02334
PANTHER:PTHR10537 Uniprot:O02334
Length = 503
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 151/474 (31%), Positives = 249/474 (52%)
Query: 4 VRSQRSRTNTPNDSVSTLP----LYRYAPQLEVRLEDFEVFAMDRLRVLKG---ISDALA 56
+ S R T + +P LY+ P ++ L +F+ AM+RL++LK + D+++
Sbjct: 20 ISSNRQSIKTAPTKAAEIPEYLQLYQTPPGDDISLTEFDDIAMERLKLLKSFENLKDSVS 79
Query: 57 RGKRPEEMENLVRDLWKANM------RHPEASEDV----NKDIISHFVLRLVYCRTEDLR 106
+E ++ R L + P E+V +D I HF+LRL +CRT + +
Sbjct: 80 LYN--DEFKDKFRKLCDGTKLIVFPDQKPPHQEEVYELWRRDNIGHFILRLAFCRTPENQ 137
Query: 107 KWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARS--FDQ 164
KW +E R+R + + + + + + TE + E LE + F+
Sbjct: 138 KWLTQIEGDFLRFRLRQEREQVLDSALANVNFTIEKLGYTEKQAMIEDLEAACQFNLFEA 197
Query: 165 PLPTADAIFYKVPFEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTN 224
P T FYKV F + EL+ V++ KG AY +V+++VT+ ++N+ A+
Sbjct: 198 PNKT----FYKVDFIDAIELIRRGSVHLKKGFAYFPFDDLVTILVTKMKNNMMAAMA--- 250
Query: 225 RKWTSTIREQERDRLTPIVEALSMS-YLGPDYSQTKEFGEISIKD--LDQLARSSFPLCM 281
R + +E RL P + LS + Y G DY+ + G I + +D+L+R SF CM
Sbjct: 251 RSFKHLAILEEEGRLLPRLSLLSNNAYSGKDYNGEQPDGSIIVTRHMIDKLSRRSFAPCM 310
Query: 282 RHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSI 341
+ + + LR +HHLK+G R Q GLFLKG+GL +++A+A + EF++K+ +++FDKEY Y+I
Sbjct: 311 KQMHNHLRVNHHLKYGARRQYGLFLKGIGLSLDEAIAMMRDEFTKKITSDKFDKEYGYNI 370
Query: 342 RHNYGKEGKRTDYTPYSCQKII-SSTPGVGDHHGCPYRHFSEENLRAALGRMGVGSRA-M 399
R+ YGKEG+R T SC II + P D HGCP+RH ++ L+ LG + + +
Sbjct: 371 RYMYGKEGRRVAQTAMSCATIILRNPPSAVDCHGCPFRHSEKQVLKQKLGSDAILKKEQI 430
Query: 400 EDVVDKVRNRHYQLACTLTFEAVHSSSCDAG----INHPNQYFSDSHKILQPKV 449
E + + Y ACT FE +H+ + G I HPNQ++ +S KI+ ++
Sbjct: 431 ERIAELAELNQYDKACTRYFEFMHNLE-EGGLGQLITHPNQFYEESQKIVAERI 483
>DICTYBASE|DDB_G0270442 [details] [associations]
symbol:polA3 "DNA primase large subunit"
species:44689 "Dictyostelium discoideum" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA;ISS] [GO:0003896
"DNA primase activity" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0030894 "replisome" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007238
InterPro:IPR016558 Pfam:PF04104 PIRSF:PIRSF009449
dictyBase:DDB_G0270442 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006270
GO:GO:0003896 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0005658 eggNOG:COG2219 KO:K02685 PANTHER:PTHR10537
RefSeq:XP_646806.1 STRING:Q55BM5 EnsemblProtists:DDB0232281
GeneID:8617779 KEGG:ddi:DDB_G0270442 OMA:KVDADKF Uniprot:Q55BM5
Length = 470
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 148/457 (32%), Positives = 237/457 (51%)
Query: 5 RSQRSRTNTPNDSVSTLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGIS---DALARGKRP 61
+ S+T+T ND+ S L Y P + E + +DR +L +S D L+ K
Sbjct: 6 KKTNSQTSTSNDACSLL--YINVPDFNCNMSQIENYCIDRFNLLNEVSKLKDTLSAQKSN 63
Query: 62 EEMENLVRDLWKANMRHPEASEDVN---KDIISHFVLRLVYCRTEDLRKWFLSMETALYR 118
+N D + R +++D KD +SH+ LRL C + D R WF++ E+ L
Sbjct: 64 TSKDN--EDFRNLSSRFLGSTKDEQFKIKDELSHYCLRLAMCDSTD-RNWFITTESILLA 120
Query: 119 YRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI-FYKVP 177
R L S+ + +S+ E+E ++ L + + + L + FYK+P
Sbjct: 121 NR--LNQSDLTTIISSFKGFGWSPVSQEEYEQYQDDLGYLVKKANLNLNEVNNTHFYKLP 178
Query: 178 FEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERD 237
F+++P+L+ ++ I KG AY+ + +V+ F++ ++ AL K T ++E
Sbjct: 179 FQDIPKLIDTKKAIIIKGEAYIYISNFKDMVIHTFKNYMNFAL--DRIKADKTRIKEEFP 236
Query: 238 RLTPIVEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHG 297
L L + G + Q I +D+ L+++SFP+CMR ++D L E LK+
Sbjct: 237 ELIQFFTTLPKAGDGTNKPQLGNTKHIRKEDVSPLSKTSFPMCMRVMYDSLVETSSLKYE 296
Query: 298 GRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPY 357
GR+Q G FLKG+GL ++A+ FW+ FS++V FDKEY Y+IRHNYG EGK T+Y+PY
Sbjct: 297 GRLQFGTFLKGIGLPYDEAINFWRIAFSKRVSNTDFDKEYLYNIRHNYGLEGKSTNYSPY 356
Query: 358 SCQKIISSTPGVGDH--HGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLAC 415
SC +IIS +P GD HGCPY S E L L +G+ +++ + +AC
Sbjct: 357 SCPRIISKSPHNGDKLVHGCPYIQ-SLERLEQKLLDLGIDDFQRIQILEATKTSP-NVAC 414
Query: 416 TLTFEAVH-SSSCDAGINHPNQYFSDS---HKILQPK 448
T F +H +++ INHPNQ++ S +K L+ K
Sbjct: 415 TKHFNFLHPNNTLTKLINHPNQFYDQSMEYYKTLEEK 451
>SGD|S000001528 [details] [associations]
symbol:PRI2 "Subunit of DNA primase" species:4932
"Saccharomyces cerevisiae" [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IMP] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA;IDA] [GO:0006270 "DNA replication initiation"
evidence=IC] [GO:0006273 "lagging strand elongation" evidence=IC]
[GO:0003896 "DNA primase activity" evidence=IEA;IGI;IDA;IMP]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0030894 "replisome" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104
PIRSF:PIRSF009449 SGD:S000001528 GO:GO:0005635 GO:GO:0046872
GO:GO:0003677 EMBL:BK006944 GO:GO:0051539 GO:GO:0006270
GO:GO:0000731 GO:GO:0003896 EMBL:X71621 GO:GO:0006273 GO:GO:0006269
GO:GO:0005658 eggNOG:COG2219 GeneTree:ENSGT00390000009790
HOGENOM:HOG000212154 KO:K02685 PANTHER:PTHR10537 OMA:KVDADKF
OrthoDB:EOG4X9BRS EMBL:M27209 EMBL:Z28045 PIR:A32497
RefSeq:NP_012879.1 PDB:3LGB PDBsum:3LGB ProteinModelPortal:P20457
SMR:P20457 DIP:DIP-2535N IntAct:P20457 MINT:MINT-633434
STRING:P20457 PaxDb:P20457 EnsemblFungi:YKL045W GeneID:853821
KEGG:sce:YKL045W CYGD:YKL045w EvolutionaryTrace:P20457
NextBio:975005 Genevestigator:P20457 GermOnline:YKL045W
Uniprot:P20457
Length = 528
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 120/294 (40%), Positives = 172/294 (58%)
Query: 173 FYKVPFEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIR 232
F K+PFE V ELV R V++ G+AY+ Q ++L+ +F S L++ LI T + R
Sbjct: 224 FIKLPFENVIELVGNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKT---YQYLPR 280
Query: 233 EQERDRLTPIVEALSMSYLGPDYSQTK--EFGE-----ISIKDL-DQLARSSFPLCMRHL 284
E DRL PI+ LS Y D++Q K +F E I+ + + + S++PLC+++L
Sbjct: 281 LNEDDRLLPILNHLSSGYTIADFNQQKANQFSENVDDEINAQSVWSEEISSNYPLCIKNL 340
Query: 285 FDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQK--VGAERFDKEYAYSIR 342
+ L+++HHL++ GR QL LFLKG+GL ++AL FW F++ + E+F+KEY YS R
Sbjct: 341 MEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEYRYSFR 400
Query: 343 HNYGKEGKRTDYTPYSCQKIISST-PGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMED 401
HNYG EG R +Y P+ C I+S PG GD+HGCP+R +S E L A L M + +
Sbjct: 401 HNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIIS 460
Query: 402 VVDKVRNRHYQLACTLTFEAVHSS-SCDAGIN------HPNQYFSDSHKILQPK 448
V+D + Y +ACT FE H+S S D I HPN YF S + LQ K
Sbjct: 461 VLDSCQKGEYTIACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQ-LQKK 513
Score = 338 (124.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 91/260 (35%), Positives = 142/260 (54%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWKANMR- 77
S L Y PQ E+ LE FE++A+DRL++L I L+R K +E+E +++ ++ +
Sbjct: 57 SKLSFYDLPPQGEITLEQFEIWAIDRLKILLEIESCLSRNKSIKEIETIIKPQFQKLLPF 116
Query: 78 HPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFD 137
+ E+ ED KD SHF+LRL +CR+++LR+ F+ ET L++ RF + +S + ++ D
Sbjct: 117 NTESLEDRKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLD 176
Query: 138 LPC-KAISRTEFENAKEKLEQ-VARSFDQPLPTADAI----------FYKVPFEEVPELV 185
LP + IS E +L Q V+ S L + F K+PFE V ELV
Sbjct: 177 LPLLQFISNEEKAELSHQLYQTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELV 236
Query: 186 AGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEA 245
R V++ G+AY+ Q ++L+ +F S L++ LI T + R E DRL PI+
Sbjct: 237 GNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKT---YQYLPRLNEDDRLLPILNH 293
Query: 246 LSMSYLGPDYSQTK--EFGE 263
LS Y D++Q K +F E
Sbjct: 294 LSSGYTIADFNQQKANQFSE 313
>CGD|CAL0005223 [details] [associations]
symbol:PRI2 species:5476 "Candida albicans" [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] InterPro:IPR007238
InterPro:IPR016558 Pfam:PF04104 PIRSF:PIRSF009449 CGD:CAL0005223
GO:GO:0003896 EMBL:AACQ01000084 EMBL:AACQ01000083 eggNOG:COG2219
KO:K02685 PANTHER:PTHR10537 RefSeq:XP_715541.1 RefSeq:XP_715597.1
STRING:Q5A1D4 GeneID:3642742 GeneID:3642788 KEGG:cal:CaO19.10403
KEGG:cal:CaO19.2885 Uniprot:Q5A1D4
Length = 543
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 102/291 (35%), Positives = 163/291 (56%)
Query: 173 FYKVPFEEVP-ELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTI 231
F K+PFE++ L++ R +++ KG+ Y+ ++L+ +F + L+ LI T + +
Sbjct: 230 FIKLPFEKITGNLISNRSIFLFKGYGYLPASLQLNLLSIEFINILNDNLIKT---FQTIP 286
Query: 232 REQERDRLTPIVEALSMSYLGPDY-SQTKEFGEISIKDLDQLA------RSSFPLCMRHL 284
R +E DRL P++ LS ++ Y S+ + E I D++ + +PLC +HL
Sbjct: 287 RLEEDDRLLPLLNNLSKNFSNFQYESEINKLDEEFISDINSKSIITPKITKHYPLCAQHL 346
Query: 285 FDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEF--SQKVGAERFDKEYAYSIR 342
L + HLK+ GR QLG+FLKG+GL +++AL FW ++F + + E F+K+Y Y+IR
Sbjct: 347 QRNLIANSHLKYNGRQQLGIFLKGIGLNVDEALKFWSSQFIKNNSMSLETFNKDYKYNIR 406
Query: 343 HNYGKEGKRTDYTPYSCQKIISST-PGV-GDHHGCPYRHFSEENLRAALGRMGVGSRA-M 399
H YG EG R +Y P+ C I+S P + ++HGCPYR F+ + L L MG+ + +
Sbjct: 407 HQYGLEGARINYKPWDCSTILSEPRPNIKSEYHGCPYRDFNLDVLINNLNNMGITDQQDL 466
Query: 400 EDVVDKVRNRHYQLACTLTFEAVHSS------SCDAGINHPNQYFSDSHKI 444
+VD V Y +ACT FE H + + INHPN YF S ++
Sbjct: 467 NSIVDDVNKHDYTIACTRVFELTHQKQLMGKENMNMHINHPNLYFDRSRQL 517
Score = 187 (70.9 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 79/263 (30%), Positives = 124/263 (47%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLW-KANMR 77
S L Y P E+ LE+FE +A+DRL++L I LAR K +E+E ++ L K
Sbjct: 50 SRLSFYDLPPTQEITLEEFETWAIDRLKILIEIESCLARSKTLKEIETSIKPLLLKYLPL 109
Query: 78 HPEASED-VN------KDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRF-LLGSSEAK 129
+P + VN KD SHF+LRLV+CR+E+LRK F+ E+ L++ R+ LL E +
Sbjct: 110 NPTSGGGTVNYEKERMKDHYSHFILRLVFCRSEELRKNFIKNESTLFKVRYNLLQPKEQQ 169
Query: 130 RAL-MEEFDLPCKAISRTEFENAKEKL-----EQVARSF---DQPLPTADA----IFYKV 176
+ + L + I+ E N ++L + F + L T D I YK
Sbjct: 170 EFIELNHHRLIWEYITPEEKTNLHQQLFNSSGNLIKNQFMLQGENL-TNDQLKQFIMYKE 228
Query: 177 PFEEVP-ELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNR--KWTSTI-R 232
F ++P E + G + + + + + S + IL + K TI R
Sbjct: 229 NFIKLPFEKITGNLISNRSIFLFKGYGYLPASLQLNLLS-IEFINILNDNLIKTFQTIPR 287
Query: 233 EQERDRLTPIVEALSMSYLGPDY 255
+E DRL P++ LS ++ Y
Sbjct: 288 LEEDDRLLPLLNNLSKNFSNFQY 310
>UNIPROTKB|E2R2T0 [details] [associations]
symbol:PRIM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003896 "DNA primase activity" evidence=IEA]
InterPro:IPR007238 InterPro:IPR016558 Pfam:PF04104 GO:GO:0003896
PANTHER:PTHR10537 Ensembl:ENSCAFT00000035673 Uniprot:E2R2T0
Length = 233
Score = 303 (111.7 bits), Expect = 7.2e-27, P = 7.2e-27
Identities = 72/209 (34%), Positives = 117/209 (55%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD---ALARGKRP--EEMENLVRDLWKA 74
+L Y P + L +FE A+DR+++LK + + + +G P ++EN +R L K
Sbjct: 25 SLQFYLEPPSENISLIEFESLAIDRVKLLKAVENLGVSYVKGIEPYQSKLENEIRRL-KF 83
Query: 75 NMRHP--EASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRAL 132
+ R + E KD ISHF+LRL YC++EDLR+WF+ E L R+RF + + R
Sbjct: 84 SFRESLEDEYEPRRKDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKIRNF 143
Query: 133 MEEFDLPCKAISRTEFENAKEKLEQVARSF-DQPLPTADAIFYKVPFEEVPELVAGRRVY 191
+++ L +AIS E ++++ + S L YK+PF + +L GR+VY
Sbjct: 144 LKDSHLQFEAISDDEKSLREQEILASSPSLCGSKLDLDSESVYKIPFADALDLFRGRKVY 203
Query: 192 IHKGHAYVAMHQVVSLVVTQFRSNLSKAL 220
+ G AYV + +V++V+ +FR+ LSKAL
Sbjct: 204 LEGGFAYVPLRDIVAIVLNEFRAKLSKAL 232
>UNIPROTKB|I3LTZ4 [details] [associations]
symbol:I3LTZ4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR016558 GO:GO:0016779 GeneTree:ENSGT00390000009790
PANTHER:PTHR10537 Ensembl:ENSSSCT00000032129 OMA:YRETREE
Uniprot:I3LTZ4
Length = 113
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A +RL++LK + + ++ K E+ ++ L +L K
Sbjct: 25 SLQFYLQPPSENISLTEFENLAFERLKLLKSVENLGVSYVKGTEQYQSKLEAELRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRT 102
+ E ED +D ISHF+LRL YC++
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQS 113
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 453 453 0.00093 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 616 (65 KB)
Total size of DFA: 278 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.88u 0.12s 37.00t Elapsed: 00:00:02
Total cpu time: 36.88u 0.12s 37.00t Elapsed: 00:00:02
Start: Tue May 21 05:32:25 2013 End: Tue May 21 05:32:27 2013