Query 012939
Match_columns 453
No_of_seqs 158 out of 347
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lgb_A DNA primase large subun 100.0 3.5E-76 1.2E-80 549.3 12.1 183 262-446 2-194 (194)
2 3l9q_A DNA primase large subun 100.0 6.6E-76 2.3E-80 547.9 5.9 186 265-450 3-191 (195)
3 1zt2_B DNA primase large subun 98.6 1.7E-07 5.7E-12 89.1 11.6 122 87-222 63-196 (212)
4 2dla_A 397AA long hypothetical 91.3 0.24 8.2E-06 45.6 5.3 122 83-222 57-187 (222)
5 1owl_A Photolyase, deoxyribodi 50.5 22 0.00077 36.8 6.4 86 275-389 329-415 (484)
6 2crn_A Ubash3A protein; compac 43.1 50 0.0017 24.7 5.6 53 381-434 9-61 (64)
7 1q08_A Zn(II)-responsive regul 38.0 20 0.00069 28.4 2.9 25 298-322 4-28 (99)
8 2dag_A Ubiquitin carboxyl-term 36.4 95 0.0033 23.8 6.4 43 380-423 8-50 (74)
9 3dfg_A Xcrecx, regulatory prot 35.1 18 0.00062 31.9 2.3 37 375-411 27-63 (162)
10 1vek_A UBP14, ubiquitin-specif 30.3 1E+02 0.0035 24.3 5.8 43 380-423 28-70 (84)
11 2dai_A Ubadc1, ubiquitin assoc 29.8 1.3E+02 0.0044 23.7 6.3 42 380-423 28-69 (83)
12 3d5l_A Regulatory protein RECX 29.7 36 0.0012 31.6 3.5 37 375-411 71-107 (221)
13 2j07_A Deoxyribodipyrimidine p 28.3 82 0.0028 31.9 6.2 48 275-323 290-338 (420)
14 1whc_A RSGI RUH-027, UBA/UBX 3 25.3 1.5E+02 0.005 22.0 5.6 43 380-423 8-50 (64)
15 3e3v_A Regulatory protein RECX 24.0 24 0.00082 31.6 1.1 37 375-411 28-64 (177)
16 2g6z_A Dual specificity protei 23.9 36 0.0012 31.3 2.3 86 276-365 68-162 (211)
17 2e0i_A 432AA long hypothetical 23.2 1.3E+02 0.0043 30.8 6.5 46 276-322 290-336 (440)
No 1
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-76 Score=549.29 Aligned_cols=183 Identities=43% Similarity=0.886 Sum_probs=171.7
Q ss_pred ccccccchh--hhhhccCcHHHHHHHHHHhccCCCCCchhhHHHHHHhhcCCChHHHHHHHHHHhccccCccccccccce
Q 012939 262 GEISIKDLD--QLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAY 339 (453)
Q Consensus 262 ~~i~~~~id--~l~~~~FPpCMr~L~~~Lr~~~hLkH~gR~ql~lFLKgiGls~eeal~fwr~~F~k~~~~~~FdKey~Y 339 (453)
+.||+++|| +++ ++|||||++||+.|+++|||+|+|||||+||||||||++||+|.||+++|+| |++|+|+|+|+|
T Consensus 2 ~~i~~~~id~~~~~-~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGls~ee~l~f~r~~F~k-~~~d~F~K~y~Y 79 (194)
T 3lgb_A 2 DEINAQSVWSEEIS-SNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTN-MTMEKFNKEYRY 79 (194)
T ss_dssp TTSSTTGGGSHHHH-TTCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTT-SCHHHHHHHTHH
T ss_pred CcCCHHHcCcHhhh-ccCcHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHHHccc-CChhhhccceee
Confidence 468999999 888 7999999999999999999999999999999999999999999999999996 898999999999
Q ss_pred eeeeeccCCCCCcccCCccchhhhcc-CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHH
Q 012939 340 SIRHNYGKEGKRTDYTPYSCQKIISS-TPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLT 418 (453)
Q Consensus 340 nIrH~YG~eGkr~~Y~p~sC~kiis~-~p~~g~~hGCPfk~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~ 418 (453)
||||+||+||+|++|+||||+||+++ +||+||+|||||||||.++|+++|+++||+.++|++|+++++++|||+||++|
T Consensus 80 ~IrH~yG~eG~r~~Y~p~sC~~i~s~~~pg~gd~HGCPfr~~~~~~L~~~L~~~gv~~~~i~~I~~~~~~~~y~~AC~k~ 159 (194)
T 3lgb_A 80 SFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIACTKV 159 (194)
T ss_dssp HHHHHTTCSTTCCCCCCCCHHHHHHSCCCCTTCCCSCHHHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeeeecCCCCCCcccCCCChHHHHhCCCCCCCCcCCCCcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCChhHHHHHH
Confidence 99999999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC-------CCcccCchHHHHHHHcccC
Q 012939 419 FEAVHSSSC-------DAGINHPNQYFSDSHKILQ 446 (453)
Q Consensus 419 Fe~~h~~~~-------~~~i~HPNqYf~~S~~~~~ 446 (453)
||.+|+... +.+|+||||||++|+++.+
T Consensus 160 Fe~tH~~~~~~~~~~~~~~i~HPN~Yf~~S~~l~~ 194 (194)
T 3lgb_A 160 FEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQK 194 (194)
T ss_dssp HHHHC------------CCCCCHHHHHHHHHHHC-
T ss_pred HHHHcCCcccccccccCCCccCcHHHHHHHHHhhC
Confidence 999997653 3689999999999998753
No 2
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=100.00 E-value=6.6e-76 Score=547.85 Aligned_cols=186 Identities=52% Similarity=1.003 Sum_probs=160.8
Q ss_pred cccchhhhhhccCcHHHHHHHHHHhccCCCCCchhhHHHHHHhhcCCChHHHHHHHHHHhcc-ccCccccccccceeeee
Q 012939 265 SIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQ-KVGAERFDKEYAYSIRH 343 (453)
Q Consensus 265 ~~~~id~l~~~~FPpCMr~L~~~Lr~~~hLkH~gR~ql~lFLKgiGls~eeal~fwr~~F~k-~~~~~~FdKey~YnIrH 343 (453)
++++||.|++++|||||++||+.|+++|||+|+|||||+||||||||++||||.||+++|++ +|++|+|+|+|+|||||
T Consensus 3 ~~~~id~l~~~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGls~ee~l~fwr~~F~k~~~~~d~f~K~y~Y~IrH 82 (195)
T 3l9q_A 3 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRH 82 (195)
T ss_dssp EGGGGHHHHHHHSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTEEEEEEECTTCC-----------CCCCEEEEEEE
T ss_pred cHHHHHhhccccCCHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHHHhccccCChhhhhhhhheeeee
Confidence 57889999999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred eccCCCCCcccCCccchhhhcc-CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHH
Q 012939 344 NYGKEGKRTDYTPYSCQKIISS-TPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAV 422 (453)
Q Consensus 344 ~YG~eGkr~~Y~p~sC~kiis~-~p~~g~~hGCPfk~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~ 422 (453)
+||+||+|++|+||||+||+++ +||+||+|||||||||.+.|++.|+++||++.+|++|+++++++|||+||++|||.+
T Consensus 83 ~yG~eG~r~~Y~p~sC~~ii~~~~p~~gd~HGCPfr~~~~~~L~~~L~~~~v~~~~i~~I~~~~~~~~y~~AC~k~Fe~t 162 (195)
T 3l9q_A 83 SFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMI 162 (195)
T ss_dssp CC------CCCCCCCHHHHHHSCCCCTTCCCSCHHHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCCCCcccCCCCcHHHHhCCCCCCCCcCCCCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 9999999999999999999977 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCcccCchHHHHHHHcccCCccc
Q 012939 423 HSSS-CDAGINHPNQYFSDSHKILQPKVE 450 (453)
Q Consensus 423 h~~~-~~~~i~HPNqYf~~S~~~~~~~~~ 450 (453)
|+.. .+.+|+||||||++|+++..+..+
T Consensus 163 H~~~~~~~~i~HPN~Yf~~S~~~~~~~~~ 191 (195)
T 3l9q_A 163 HNVDDCGFSLNHPNQFFCESQRILNGGKD 191 (195)
T ss_dssp HTCSCCCSCCCCHHHHHHHHHHHHTC---
T ss_pred cCCccCCCcccChHHHHHHHHHHHhCCcc
Confidence 9854 456799999999999998876543
No 3
>1zt2_B DNA primase large subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: a.262.1.1
Probab=98.63 E-value=1.7e-07 Score=89.06 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=91.4
Q ss_pred hhhHHHHHHH-HHhc-CChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccCCHHHHHHHHHHHHHHhhhcCC
Q 012939 87 KDIISHFVLR-LVYC-RTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQ 164 (453)
Q Consensus 87 kD~iSHfiLR-La~c-~s~elrrwFi~~E~~LF~~R~~~~~~~~~~~fl~~~~l~~~~is~~e~~~~~~~L~~~~~~~~~ 164 (453)
.+.+|+ +++ ++.| .++.+.++|+..|++.|..||..++.+.+..+...+|++.+....-++ ....
T Consensus 63 ~el~~y-~allivs~~~d~~l~~r~a~~EA~~a~~~L~~e~~e~l~~ia~~lgi~~~~~~~l~~------------~l~~ 129 (212)
T 1zt2_B 63 PVLVFY-TTLLSLAILNDVKLIRRYAYAEAKQFRSLLHTENEENLLEISKLLDLKINRCDPIKF------------YLEK 129 (212)
T ss_dssp HHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCCEEEEEEEE------------ECSS
T ss_pred HHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccch------------hhhc
Confidence 467888 555 4555 699999999999999999999999888888888899998753111000 0000
Q ss_pred CCCCCCCceEeecccchHhhhcccc-------eEEeccEEEEehhhHHHHHHHHHHHHHHH---HHHH
Q 012939 165 PLPTADAIFYKVPFEEVPELVAGRR-------VYIHKGHAYVAMHQVVSLVVTQFRSNLSK---ALIL 222 (453)
Q Consensus 165 ~~~~~~~~~ykVpF~~v~~LV~~R~-------v~l~~G~ayVp~~~l~~lv~~~fr~~L~~---~L~~ 222 (453)
.... ....|+|||.+++.++...+ ..|.+|+|||+++++.+|+.++|+.++.+ +|+.
T Consensus 130 ~~~~-~~~~y~i~~~dYL~la~~~~~~WrLvNr~v~~G~V~l~k~el~rLl~Eai~~~i~~~i~~lp~ 196 (212)
T 1zt2_B 130 KRRI-IQKEFCVHFIDYLKYTKDLKEDWKLSGQILHKGYVYLDKNQLIGLIAESIKSKIVEMIRPLNL 196 (212)
T ss_dssp SSSE-EEEEEEEEHHHHHHHTTTSCGGGCTTSSCEETTEEEECHHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred cccc-cCceeEeeHHHHHHHccCCCccceeeeeEccCcEEEEcHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 0001 23468999999888887511 35999999999999999999999999998 5543
No 4
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=91.31 E-value=0.24 Score=45.63 Aligned_cols=122 Identities=19% Similarity=0.352 Sum_probs=80.2
Q ss_pred hhhhhhhHHHHHHH--HHhcCC---hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccCCHHHHHHH-HHHHH
Q 012939 83 EDVNKDIISHFVLR--LVYCRT---EDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENA-KEKLE 156 (453)
Q Consensus 83 ~~~~kD~iSHfiLR--La~c~s---~elrrwFi~~E~~LF~~R~~~~~~~~~~~fl~~~~l~~~~is~~e~~~~-~~~L~ 156 (453)
.+..+|..+.|.|- |||+.- -++.+ ++-..++..|+..... +....++.+.+++.|+-.- ...|.
T Consensus 57 ~e~~kDL~~FYALLGALa~SPYGlEmElVk---~aNl~iYseRi~r~k~------i~~~~i~v~~v~~~E~P~~D~~ilE 127 (222)
T 2dla_A 57 QDNVMDLAQFYALLGALSYSPYGIELELVK---KANLIIYSERLKRKKE------IKPEEISIDVSTAIEFPTEDVRKIE 127 (222)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCSSHHHHHHH---HHHHHHHHHHHTTCSS------CCTTTSSSSEEECCCCCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhcCCcccchhhHh---hhhHHHHHHHHHHhcc------CCcceeeeeecccccCCchHHHHHH
Confidence 55678999999998 677752 33322 4555667777765422 2233355554444332110 11122
Q ss_pred HHhhhcCCCCCCCCCceEeecccchHhhh-cc--cceEEeccEEEEehhhHHHHHHHHHHHHHHHHHHH
Q 012939 157 QVARSFDQPLPTADAIFYKVPFEEVPELV-AG--RRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALIL 222 (453)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ykVpF~~v~~LV-~~--R~v~l~~G~ayVp~~~l~~lv~~~fr~~L~~~L~~ 222 (453)
.. .+. -.-|+|+-.+.++|+ .. ..||+.+|+||+..+++..+-..+|..++.++...
T Consensus 128 r~---~~~------LpeYk~~l~~FL~L~p~~sLk~~YIr~G~vYLr~e~li~lW~KAFEkN~EkaVN~ 187 (222)
T 2dla_A 128 RV---YGK------IPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNM 187 (222)
T ss_dssp HH---HSS------CCCEEEEHHHHHHHCTTSCGGGSEEETTEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---hcc------cchhheeHHHHhhhccccccceEEEEcCeEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 125999999999999 33 56999999999999999999999999999988864
No 5
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=50.46 E-value=22 Score=36.82 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=61.0
Q ss_pred ccCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHHHhccccCccccccccceeeeeeccCCCCCcc
Q 012939 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTD 353 (453)
Q Consensus 275 ~~FPpCMr~L~~~Lr~~~hLkH~gR~ql~lFL-KgiGls~eeal~fwr~~F~k~~~~~~FdKey~YnIrH~YG~eGkr~~ 353 (453)
+.|| |+-+.+..|.++.-+-|-+|+-.+.|| |.+|++-.+.-++|.+.+ .+
T Consensus 329 TG~P-~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~l---------------------------lD 380 (484)
T 1owl_A 329 TGYP-IVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHL---------------------------VD 380 (484)
T ss_dssp SSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTC---------------------------TT
T ss_pred CCCh-hHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhc---------------------------cc
Confidence 3566 888999999999999999999999999 778999877766664421 45
Q ss_pred cCCccchhhhccCCCCCCCCCCCCCCCCHHHHHHHH
Q 012939 354 YTPYSCQKIISSTPGVGDHHGCPYRHFSEENLRAAL 389 (453)
Q Consensus 354 Y~p~sC~kiis~~p~~g~~hGCPfk~~~~~~L~~~L 389 (453)
|-+++..-+....-|.| ++.=|||.|++..-.+..
T Consensus 381 ~d~a~n~g~wqw~ag~G-~d~~pfRifNp~~q~~kf 415 (484)
T 1owl_A 381 GDLAANNGGWQWSASSG-MDPKPLRIFNPASQAKKF 415 (484)
T ss_dssp CCHHHHHHHHHHTTTCS-SSCCCCCCCCHHHHHHHH
T ss_pred CCcccCHHHHHHhhCcC-CCCCccceeCHHHHhhhc
Confidence 55666655555433433 234568888886654443
No 6
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.09 E-value=50 Score=24.74 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHcCCCCCCcccCc
Q 012939 381 SEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHSSSCDAGINHP 434 (453)
Q Consensus 381 ~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h~~~~~~~i~HP 434 (453)
+++.|. .|..||.+......-+..+.+...+.|...+|+.......++.+..|
T Consensus 9 ~e~~v~-~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~ 61 (64)
T 2crn_A 9 SPSLLE-PLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGP 61 (64)
T ss_dssp SCSSHH-HHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCC
T ss_pred CHHHHH-HHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCC
Confidence 445564 45559999988888888887778999999999866533333444444
No 7
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=38.01 E-value=20 Score=28.40 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.1
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHH
Q 012939 298 GRMQLGLFLKGVGLRMEDALAFWKA 322 (453)
Q Consensus 298 gR~ql~lFLKgiGls~eeal~fwr~ 322 (453)
.|+++-.+||.+|||++|+-.+...
T Consensus 4 ~rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5889999999999999999888753
No 8
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=95 Score=23.84 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012939 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+++.|.++ ..||.+.......+..+.+...+.|+..+|+..-
T Consensus 8 ~~e~~v~~L-~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 8 LDESVIIQL-VEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SCHHHHHHH-HHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 577777555 5599999888888888876679999999998654
No 9
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.14 E-value=18 Score=31.92 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012939 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfk~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|-++..+...|++.|...|++++.|+.|++..+...|
T Consensus 27 Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ 63 (162)
T 3dfg_A 27 LVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGW 63 (162)
T ss_dssp HHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred hhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 5567789999999999999999999999999988777
No 10
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.26 E-value=1e+02 Score=24.25 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012939 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+.+.+.++ ..||.+.......+..+.++.-+.|+..+|+..-
T Consensus 28 ~~e~~v~~L-~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 28 ANEEIVAQL-VSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 577777555 5699999888888888877789999999998554
No 11
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.79 E-value=1.3e+02 Score=23.68 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012939 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+++.|.++ ..||.+.......+..+ ++.-+.|...+|+..-
T Consensus 28 ~~e~~i~~L-~~MGF~~~~a~~AL~~t-~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 28 VDEAALRQL-TEMGFPENRATKALQLN-HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHT-TSCHHHHHHHHHHGGG
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh-CCCHHHHHHHHHHCCC
Confidence 477777555 45999998888888877 7789999999998654
No 12
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.68 E-value=36 Score=31.57 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012939 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfk~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|-++..+...|+..|...|++++.|+.|++..+...|
T Consensus 71 Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ 107 (221)
T 3d5l_A 71 LSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQL 107 (221)
T ss_dssp HTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred hccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 6667789999999999999999999999999988877
No 13
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=28.28 E-value=82 Score=31.89 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=40.5
Q ss_pred ccCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHHH
Q 012939 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKAE 323 (453)
Q Consensus 275 ~~FPpCMr~L~~~Lr~~~hLkH~gR~ql~lFL-KgiGls~eeal~fwr~~ 323 (453)
+.|| |+-+-+..|.++.-+-|-+|+-.+.|| |.+|++-.+.-++|...
T Consensus 290 TG~P-~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~ 338 (420)
T 2j07_A 290 TGVP-LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHL 338 (420)
T ss_dssp SSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred CCcH-hHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4566 888888899999999999999999998 77889988777777653
No 14
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.31 E-value=1.5e+02 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012939 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+++.|.++ ..||.+.......+..+.++..+.|...+|+..-
T Consensus 8 ~~~~~v~~L-~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 8 AELTALESL-IEMGFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCHHHHH-HTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 466677554 5699999888888888766889999999987543
No 15
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.03 E-value=24 Score=31.62 Aligned_cols=37 Identities=8% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012939 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfk~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|-++..+...|++.|...|++++.|+.|++..+...|
T Consensus 28 Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ 64 (177)
T 3e3v_A 28 LSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDL 64 (177)
T ss_dssp HHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTS
T ss_pred hccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 4466788999999999999999999999999988887
No 16
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=23.94 E-value=36 Score=31.30 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHHHhccC----CCCCc-hhhH---HHHHHhhcCCChHHHHHHHHHHhccccCccccccc-cceeeeeecc
Q 012939 276 SFPLCMRHLFDKLREDH----HLKHG-GRMQ---LGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKE-YAYSIRHNYG 346 (453)
Q Consensus 276 ~FPpCMr~L~~~Lr~~~----hLkH~-gR~q---l~lFLKgiGls~eeal~fwr~~F~k~~~~~~FdKe-y~YnIrH~YG 346 (453)
.|+.|..-+.+.+..+. |=.++ +|=. .+..++.-|++++||+.+.++.=......+.|-++ ..|.-+
T Consensus 68 ~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~s~~eAl~~vr~~Rp~i~pN~~f~~qL~~~e~~---- 143 (211)
T 2g6z_A 68 HFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYESE---- 143 (211)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHH----
Confidence 58889888887776553 44555 6743 33456778999999999998842211223455444 223221
Q ss_pred CCCCCcccCCccchhhhcc
Q 012939 347 KEGKRTDYTPYSCQKIISS 365 (453)
Q Consensus 347 ~eGkr~~Y~p~sC~kiis~ 365 (453)
+.|++.+=.++||..-..+
T Consensus 144 l~~~~~~p~~~~c~~e~~~ 162 (211)
T 2g6z_A 144 ILPSTPNPQPPSCQGEAAG 162 (211)
T ss_dssp HSCC---------------
T ss_pred HhccCCCCCCCCccccccc
Confidence 2345566667899977663
No 17
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=23.15 E-value=1.3e+02 Score=30.78 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred cCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHH
Q 012939 276 SFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKA 322 (453)
Q Consensus 276 ~FPpCMr~L~~~Lr~~~hLkH~gR~ql~lFL-KgiGls~eeal~fwr~ 322 (453)
.|| |+-+.+..|.++.-+-|-+|+-.+.|| |.+|++-.+.-++|.+
T Consensus 290 G~P-~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~ 336 (440)
T 2e0i_A 290 GYP-IIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFAT 336 (440)
T ss_dssp SCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 454 889999999999999999999999998 6788888777776655
Done!