BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012940
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 608 bits (1569), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/368 (81%), Positives = 317/368 (86%), Gaps = 1/368 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK+A+HLLKYDS+LGTFKADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
I+DNET S+DGK IKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI
Sbjct: 61 IIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAPAKG+DIPTYVVGVNEKDY H+VANI+SNASCTTNCLAPFVKV+DEELGIVKG MTT
Sbjct: 121 ITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTT 180
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAVSLV+PQLKGKLNGIALR
Sbjct: 181 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 240
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK G+TAEDVN AFRKAA GPLKG+L VCD+PLVSVDFRCSD SSTIDS
Sbjct: 241 NVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDS 300
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPA 444
SLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+ SGDPLEDFC+ NPA
Sbjct: 301 SLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPA 360
Query: 445 DEECKVYE 452
DEECK+YE
Sbjct: 361 DEECKLYE 368
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/368 (71%), Positives = 297/368 (80%), Gaps = 4/368 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG DIPTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAV+LV+P LKGKLNGIALR
Sbjct: 179 THSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 239 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPA 444
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW G+ SGDPLEDFC+ NPA
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQGLEGSVASGDPLEDFCKDNPA 357
Query: 445 DEECKVYE 452
DEECK+YE
Sbjct: 358 DEECKLYE 365
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/338 (72%), Positives = 274/338 (81%), Gaps = 3/338 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG DIPTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAV+LV+P LKGKLNGIALR
Sbjct: 179 THSYTGDQRLLDAAHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 239 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 335
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/338 (72%), Positives = 274/338 (81%), Gaps = 3/338 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG DIPTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAV+LV+P LKGKLNGIALR
Sbjct: 179 THSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 239 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 335
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/338 (72%), Positives = 274/338 (81%), Gaps = 3/338 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG DIPTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAV+LV+P LKGKLNGIALR
Sbjct: 179 THSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 239 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 335
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/338 (71%), Positives = 273/338 (80%), Gaps = 5/338 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHG KDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHG-KDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISV GK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 60 TAGDSAISV-GKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG DIPTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 119 ITAPGKG-DIPTYVVGVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 176
Query: 266 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
THSYTGDQ NIVPTSTGAAKAV+LV+PQLKGKLNGIALR
Sbjct: 177 THSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 237 NVSVVDLVVQVSKKTF-AEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDS 295
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct: 296 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 333
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 265/339 (78%), Gaps = 3/339 (0%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
AKLKVAINGFGRIGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADV
Sbjct: 1 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
K ISVDGK+I+VVSNR+P LPW ELGIDIVIEGTGVFVD GAGKHI+AGAKKV
Sbjct: 61 KPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
IITAP KG DIPTYVVGVN Y H+ I+SNASCTTNCLAPFVKV+D++ GI+KG MT
Sbjct: 121 IITAPGKG-DIPTYVVGVNADAYSHD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMT 178
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
TTHSYTGDQ NIVPTSTGAAKAV+LV+P LKGKLNGIALR
Sbjct: 179 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
KK AE+VNAAFR +AE LKGIL VCD PLVSVDFRCSD S+TID
Sbjct: 239 PNVSVVDLVVQVSKKTF-AEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTID 297
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
SSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA W
Sbjct: 298 SSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 336
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/337 (57%), Positives = 242/337 (71%), Gaps = 2/337 (0%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+I
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAP KG + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTTT
Sbjct: 122 TAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTT 181
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ NIVPT+TGAAKAV+LV+P+LKGKLNGIALR
Sbjct: 182 HSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPN 241
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK IT E VN +KA++ +KGI+ D+PLVS DFR +D SS +DSS
Sbjct: 242 VSVVDLVVQVEKPTIT-EQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSS 300
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
LT+VM D+VKV+AWYDNEWGYSQRVVDLA L A KW
Sbjct: 301 LTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/336 (57%), Positives = 240/336 (71%), Gaps = 2/336 (0%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+I
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAP K + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTTT
Sbjct: 122 TAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTT 181
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ NIVPT+TGAAKAV+LV+P+LKGKLNGIALR
Sbjct: 182 HSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPN 241
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK IT E VN +KA++ +KGI+ D+PLVS DFR +D SS +DSS
Sbjct: 242 VSVVDLVVQVEKPTIT-EQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSS 300
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
LT+VM D+VKV+AWYDNEWGYSQRVVDLA L A K
Sbjct: 301 LTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARK 336
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/336 (53%), Positives = 226/336 (67%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R K+ ++VV VND+GG +HLLKYDS+ G A+V +
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
N + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 60 NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK DI T V+GVN+ YD + +++SNASCTTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ +I+PT+TGAAKAV+LV+P+LKGKLNG+A+R
Sbjct: 178 HSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 332 bits (850), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/336 (52%), Positives = 223/336 (66%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R K+ ++VV VND +HLLKYDS+ G A+V +
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
N + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 60 NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK DI T V+GVN+ YD + +++SNASCTTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ +I+PT+TGAAKAV+LV+P+LKGKLNG+A+R
Sbjct: 178 HSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 222/336 (66%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R K+ ++VV VN +HLLKYDS+ G A+V +
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
N + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 60 NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK DI T V+GVN+ YD + +++SNASCTTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ +I+PT+TGAAKAV+LV+P+LKGKLNG+A+R
Sbjct: 178 HSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 328 bits (841), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 222/336 (66%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R K+ ++VV VND +HLLKYDS+ G A+V +
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
N + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 60 NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK DI T V+GVN+ YD + +++SNAS TTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ +I+PT+TGAAKAV+LV+P+LKGKLNG+A+R
Sbjct: 178 HSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 222/336 (66%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R K+ ++VV VND +HLLKYDS+ G A+V +
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
N + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 60 NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK DI T V+GVN+ YD + +++SNAS TTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ +I+PT+TGAAKAV+LV+P+LKGKLNG+A+R
Sbjct: 178 HSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/343 (48%), Positives = 218/343 (63%), Gaps = 12/343 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR+F R GR++ +++V +ND K+ +HLLKYDS+ G FK V+
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEA 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D ++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D A KH+Q GAKKVII
Sbjct: 61 KD-DSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAK DI T V+GVNE+ Y+ + NI+SNASCTTNCLAP VKV++E G+ KG M T
Sbjct: 120 TAPAKNPDI-TVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
H+YT DQ NIVPT+TGAAKA+ V+P+LKGKL+G A R
Sbjct: 179 HAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEG-------PLKGILAVCDVPLVSVDFRCSDV 379
K + E+VN FR+AA+ LK IL C+ P+VS D +
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
S+ D+ LT V+ D++V + AWYDNEWGYS R+ DL +A +
Sbjct: 299 SAIFDAPLTQVI-DNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/332 (49%), Positives = 210/332 (63%), Gaps = 4/332 (1%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
+VAINGFGRIGR R + RK+ ++VV +ND K +HLLKYDS+ F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT 61
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+N I VDGK IKV + DP +LPW +LG+D VIE TGVF + A H+QAGAKKVIIT
Sbjct: 62 ENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
APAKG DI T V+G NE E I+S ASCTTN +AP VKV+ E+ GIV G +TT H
Sbjct: 121 APAKGEDI-TVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 268 SYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXX 327
SYT DQ NI+PT+TGAAKAV+LV+P++KGKL+G+A+R
Sbjct: 179 SYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDG 238
Query: 328 XXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSL 387
EK+ T E+VNA ++A EG LKGI+ D P+VS D + S D+++
Sbjct: 239 SITDLTVLVEKE-TTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATI 297
Query: 388 TMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 419
T V+G +VKV +WYDNE+GYS RVVD L+
Sbjct: 298 TNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 329
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/327 (47%), Positives = 208/327 (63%), Gaps = 5/327 (1%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
A +VAINGFGRIGR R K+S ++V +N S + +HL+KYD++ G F V
Sbjct: 3 AMTRVAINGFGRIGRMVFR--QAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ ++ + VDGK+I++++NRDP +LPW +LG+++VIE TG F A H++AGAKKV
Sbjct: 61 EAFEDHLL-VDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKV 119
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
I+TAP K D+ T VVGVNE D ++SNASCTTNCLAP VKV+DE+ GI G MT
Sbjct: 120 ILTAPGKNEDV-TIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMT 178
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T H+YT DQ +I+PT+TGAAKA++ V+P L GKL+G+ALR
Sbjct: 179 TVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 238
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ +T E +N AF+ A G LKGI+ + PLVS+DF + S+ ID
Sbjct: 239 PNVSLVDLVVDV-KRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIID 297
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQR 411
TMVMGD VKV+AWYDNEWGYS+R
Sbjct: 298 GLSTMVMGDRKVKVLAWYDNEWGYSRR 324
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 163/349 (46%), Positives = 216/349 (61%), Gaps = 12/349 (3%)
Query: 75 GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD 134
G++ + + +K+AINGFGRIGRN + R +D+V +ND K +HLLKYD
Sbjct: 10 GTLEAQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYD 66
Query: 135 SLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV----DG 190
S G + V+ D I VDG+ IK+++ RDP LPWA+LGID+VIE TGVF D
Sbjct: 67 STFGVYNKKVESRDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDK 125
Query: 191 PGAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFV 249
G H+ AGAKKVI+T PAK +I T V+GVN+ D + ++ VSNASCTTNCLAP
Sbjct: 126 GGYLDHVNHAGAKKVILTVPAKD-EIKTIVLGVNDHDINSDL-KAVSNASCTTNCLAPLA 183
Query: 250 KVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMP 309
KV+ E GI +G MTT H+YT DQ +I+PTSTGAAKAV LV+P
Sbjct: 184 KVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLP 243
Query: 310 QLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGP-LKGILAVCDVP 368
+LKGKLNG ++R +KK +T E++N+ RKA+E P LKGIL + P
Sbjct: 244 ELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDP 303
Query: 369 LVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAH 417
+VS D + + SS +D TMV+ + K+++WYDNE+GYS RVVDLA
Sbjct: 304 IVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQ 352
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 211/336 (62%), Gaps = 7/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS+ F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D++ + VDGK I+ + +DP ++PWAE G+ +VIE TGVF D A H++ GAKKVII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAKG DI T V+GVN + YD +I+SNASCTTN LAP +KV++E G+ K MTT
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTV 175
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ NI+PT+TGAAKA +LV+P LKG+ +G+ALR
Sbjct: 176 HSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
K+ +TAE+VNAA + AAEGPLKGILA + +V D SS +D+
Sbjct: 236 GSISDITALL-KREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAK 294
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
LT +G +MVKV AWYDNEWGY+ RV DL LV K
Sbjct: 295 LTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRK 329
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 164/336 (48%), Positives = 210/336 (62%), Gaps = 7/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS+ F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D++ + VDGK I+ + +DP ++PWAE G+ +VIE TGVF D A H++ GAKKVII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAKG DI T V+GVN + YD +I+SNAS TTN LAP +KV++E G+ K MTT
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTV 175
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ NI+PT+TGAAKA +LV+P LKG+ +G+ALR
Sbjct: 176 HSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
K+ +TAE+VNAA + AAEGPLKGILA + +V D SS +D+
Sbjct: 236 GSISDITALL-KREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAK 294
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
LT +G +MVKV AWYDNEWGY+ RV DL LV K
Sbjct: 295 LTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRK 329
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 283 bits (725), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 208/336 (61%), Gaps = 7/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS G F V
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG---VEVALINDLTDNKTLAHLLKYDSTYGRFPGAVG- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D E + VDGK I+ + +DP ++PW + G+ +V+E TGVF DG A H++AGAKKVII
Sbjct: 57 YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAK DI T V+GVN + YD +I+SNASCTTN LAP +KV+++ G+ K MTT
Sbjct: 117 TAPAKNEDI-TVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTV 175
Query: 267 HSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXX 326
HSYT DQ NI+PT+TGAAKA +LV+P LKG+ +G+ALR
Sbjct: 176 HSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 327 XXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
K+ +TAE+VNAA + AAEGPLKGILA + +V D SS +D
Sbjct: 236 GSISDITALL-KREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGK 294
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
LT +G ++VKV AWYDNEWGY+ RV DL LV K
Sbjct: 295 LTKAIG-NLVKVFAWYDNEWGYANRVADLVELVLKK 329
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 206/332 (62%), Gaps = 8/332 (2%)
Query: 87 LKVAINGFGRIGRNFLRCW--HGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN LR GR+D ++VV +ND G V+ +HLL+YDS+ G F V
Sbjct: 24 VRVAINGFGRIGRNILRAIIESGRQD--IEVVALNDLGSVETNAHLLRYDSVHGCFPGTV 81
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
++V + I + LIKV + RDP QLPW L IDI +E TG+F A H+ AGAK+V
Sbjct: 82 QVV-GDAIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRV 140
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+++AP++GAD+ T V GVN + E +++SNASCTTNCLAP +V+ +GI KG MT
Sbjct: 141 LVSAPSEGADL-TVVYGVNHQFLSKE-HHVISNASCTTNCLAPVAQVLHNTVGIEKGFMT 198
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T HSYTGDQ +++PTSTGAAKAV LV+P+LKG L+G+++R
Sbjct: 199 TIHSYTGDQPVLDTMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPT 258
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ T E++N A R AA+G LKGIL D LVS DF + S+
Sbjct: 259 PNVSVVDLTFTA-KRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAIFH 317
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 416
+ T V+ + +V+ WYDNEWG+S R+ D A
Sbjct: 318 NDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTA 349
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/334 (47%), Positives = 207/334 (61%), Gaps = 12/334 (3%)
Query: 87 LKVAINGFGRIGRNFLRCW--HGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN LR GR D + VV +ND G V+ +HLL+YDS+ G F +V
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTD--IQVVAINDLGPVETNAHLLRYDSVHGRFPKEV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
++ +TI V IKV + R+P +LPW E +DI +E TG+F A H++AGAK+V
Sbjct: 61 EVA-GDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 205 IITAPAKGADIPTYVVGVNEKDY--DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
I++APA GAD+ T V GVN DH V +SNASCTTNCLAP +V+++ +GI KG
Sbjct: 120 IVSAPADGADL-TVVYGVNNDKLTKDHLV---ISNASCTTNCLAPVAQVLNDTIGIEKGF 175
Query: 263 MTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRX 322
MTT HSYTGDQ +++PTSTGAAKAV LV+P+LKGKL+G+A+R
Sbjct: 176 MTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRV 235
Query: 323 XXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSST 382
K+ T E+VN A R+AA G LKGIL D LVS DF SS
Sbjct: 236 PTPNVSVVDLTFIA-KRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSV 294
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 416
+ T VM MV++++WYDNEWG+S R+ D A
Sbjct: 295 FHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTA 328
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 208/332 (62%), Gaps = 7/332 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAING+GRIGRN LR ++ K L++V +ND G K +HL +YD+ G F +V
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTNAHLTQYDTAHGKFPGEVS 70
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
VD + + V+G I+V++NR+P +LPW ELG+D+V+E TG F A H++ GAKKVI
Sbjct: 71 -VDGDYLVVNGDRIRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKVI 129
Query: 206 ITAPAKGADI-PTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
I+AP G D+ T V GVN E ++SNASCTTNCLAP VK +++++G+ G MT
Sbjct: 130 ISAPG-GKDVDATIVYGVNHDVLKAE-HTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T H+YT DQ + +PT TGAA AV LV+P+L GKL+G A+R
Sbjct: 188 TIHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVPT 247
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ TA +VNA ++A+EG LKGIL + PLVS+DF + SST D
Sbjct: 248 INVSIVDLSFIA-KRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDFNHNPASSTFD 306
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 416
++LT V G +VKV +WYDNEWG+S R++D A
Sbjct: 307 ATLTKVSG-RLVKVSSWYDNEWGFSNRMLDTA 337
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 199/330 (60%), Gaps = 7/330 (2%)
Query: 87 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAING+GRIGRN LR + G K +++V +ND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V+ + V+G I+V +NR+P QLPW L +D+V+E TG F AG HI+ GAKKVI
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 206 ITAPAKGADI-PTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
I+AP GAD+ T V GVN ++SNAS TTNCLAP VK ++++LG+ G MT
Sbjct: 121 ISAPG-GADVDATVVYGVNHGTL-KSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLMT 178
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T H+YT +Q +++PT TGAA AV V+P+L GKLNG A+R
Sbjct: 179 TVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPT 238
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ T E+VN + A+EG LKGIL PLVSVD+ SST+D
Sbjct: 239 INVSIVDLSFVA-KRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVD 297
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVD 414
+SLT V G +VKV +WYDNEWG+S R++D
Sbjct: 298 ASLTKVSG-RLVKVSSWYDNEWGFSNRMLD 326
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 257 bits (657), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 152/348 (43%), Positives = 204/348 (58%), Gaps = 10/348 (2%)
Query: 75 GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKY 133
GS + + +AINGFGRIGR LR RK+ +DVV +ND V A+++ KY
Sbjct: 3 GSHHHHHHGIQMVSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKY 60
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
DS G +K +V D + ++GK + V +DP LPW +LG+DI ++ TGVF + A
Sbjct: 61 DSTHGKYKGEVSH-DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSA 119
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
KHI AGAKKV+ITAP+K A P +VVGVNE Y+ E IVSNASCTTNCLAP K+++
Sbjct: 120 QKHIDAGAKKVVITAPSKTA--PMFVVGVNEDKYNGE--KIVSNASCTTNCLAPIAKIIN 175
Query: 254 EELGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLK 312
+E GI +G MTT HS T Q NI+P+STGAAKAV V+P+L+
Sbjct: 176 DEFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQ 235
Query: 313 GKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSV 372
GKL G+A R K T +++ AA +K +EG LK ++ + +VS
Sbjct: 236 GKLTGMAFRVPTTDVSVVDLTVKLVKAA-TYDEIKAAVKKVSEGKLKDVVGYTEDAVVSS 294
Query: 373 DFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
DF S+ D++ + + VK+VAWYDNE+GYS RVVDL VA
Sbjct: 295 DFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 254 bits (650), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 196/338 (57%), Gaps = 10/338 (2%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR R GRKD ++VV +ND + + +LLKYDS+ G F +V
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTH 70
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + + K + V + +DP Q+PW + +D+V E TGVF+ A H++ GAKKVI+
Sbjct: 71 ADGFLL-IGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 129
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP K D P YV+G+N YD + IVSNASCTTNCLAP KV+++ GIV+G MTT
Sbjct: 130 SAPPKD-DTPIYVMGINHHQYDTKQL-IVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 187
Query: 267 HSYTGDQXXX---XXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXX 323
H+ T +Q NI+P STGAAKAV V+P+L GKL G+A R
Sbjct: 188 HASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVP 247
Query: 324 XXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
+K E+V +KAAEGPLKGIL + +VS DF + SS
Sbjct: 248 IGTVSVVDLVCRLQKPA-KYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIF 306
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
D + + D+ K+V+WYDNEWGYS RV+DLA + T
Sbjct: 307 DMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 254 bits (649), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 196/337 (58%), Gaps = 10/337 (2%)
Query: 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA 142
+A K+ INGFGRIGR R GRKD ++VV +ND + + +LLKYDS+ G F
Sbjct: 1 MAVTKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPC 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
+V D + + K + V + +DP Q+PW + +D+V E TGVF+ A H++ GAK
Sbjct: 59 EVTHADGFLL-IGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
KVI++AP K D P YV+G+N YD + IVSNASCTTNCLAP KV+++ GIV+G
Sbjct: 118 KVIMSAPPKD-DTPIYVMGINHHQYDTKQL-IVSNASCTTNCLAPLAKVINDRFGIVEGL 175
Query: 263 MTTTHSYTGDQXXX---XXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIA 319
MTT H+ T +Q NI+P STGAAKAV V+P+L GKL G+A
Sbjct: 176 MTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVA 235
Query: 320 LRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDV 379
R +K E+V +KAAEGPLKGIL + +VS DF +
Sbjct: 236 FRVPIGTVSVVDLVCRLQKPA-KYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNR 294
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 416
SS D + + D+ K+V+WYDNEWGYS RV+DLA
Sbjct: 295 SSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLA 331
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/352 (42%), Positives = 202/352 (57%), Gaps = 11/352 (3%)
Query: 75 GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY 133
G VP A L INGFGRIGR LR R D + VV +ND V+ ++LLKY
Sbjct: 13 GLVPRGSHMTATL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 68
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
DS+ G F V+ V + + ++GK++KV +DP ++PW G IV E TGVF A
Sbjct: 69 DSVHGNFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 127
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
H++ GAKKVII+AP K ++P YV+GVN +YD N++SNASCTTNCLAP K+++
Sbjct: 128 SLHLKGGAKKVIISAPPKD-NVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIIN 186
Query: 254 EELGIVKGAMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTGAAKAVSLVMPQ 310
++ GIV+G MTT HS T +Q NI+P STGAAKAV V+P
Sbjct: 187 DKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPA 246
Query: 311 LKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLV 370
L GKL G+A+R K + E++ A ++A+ GP+KGI+ +V
Sbjct: 247 LNGKLTGMAIRVPTPDVSVVDLTCKLAKPA-SIEEIYQAVKEASNGPMKGIMGYTSDDVV 305
Query: 371 SVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
S DF SS D + + + D VK+++WYDNE GYS R+VDLA VA++
Sbjct: 306 STDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 357
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 205/343 (59%), Gaps = 10/343 (2%)
Query: 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFK- 141
+ K+K+ INGFGRIGR R +D +++V VND + +++ KYD++ G +K
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKH 58
Query: 142 ADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201
+D+KI D++T+ + K + V R+P ++PWAE G + V+E TGVF D A H++ GA
Sbjct: 59 SDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGA 118
Query: 202 KKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKG 261
KKV+I+AP+K D P +V GVNE Y ++ +IVSNASCTTNCLAP KV+ + GI++G
Sbjct: 119 KKVVISAPSK--DAPMFVCGVNEDKYTSDI-DIVSNASCTTNCLAPLAKVIHDNFGIIEG 175
Query: 262 AMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIAL 320
MTT H+ T Q NI+P+STGAAKAV V+P L GKL G++
Sbjct: 176 LMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSF 235
Query: 321 RXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVS 380
R EK + + + +A + A+EG LKGI+ + LVS DF S
Sbjct: 236 RVPTVDVSVVDLTVRIEKAA-SYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRS 294
Query: 381 STIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 422
S D+ + + D+ VK+VAWYDNEWGYS RV+DL H+ T+
Sbjct: 295 SIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/334 (43%), Positives = 196/334 (58%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V++
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 60 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 119 TGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 175
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 176 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 235
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 236 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDA 294
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYDNE GYS +V+DL AH+
Sbjct: 295 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHI 328
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/338 (42%), Positives = 198/338 (58%), Gaps = 9/338 (2%)
Query: 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV 147
+ INGFGRIGR LR R D + VV +ND V+ ++LLKYDS+ G F V+ V
Sbjct: 20 LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVE-V 76
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+ + ++GK++KV +DP ++PW G IV E TGVF A H++ GAKKVII+
Sbjct: 77 SGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
AP K ++P YV+GVN +YD N++SNASCTTNCLAP K+++++ GIV+G MTT H
Sbjct: 137 APPKD-NVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVH 195
Query: 268 SYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
S T +Q NI+P STGAAKAV V+P L GKL G+A+R
Sbjct: 196 SLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPT 255
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K + E++ A ++A+ GP+KGI+ +VS DF SS D
Sbjct: 256 PDVSVVDLTCKLAKPA-SIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFD 314
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
+ + + D VK+++WYDNE GYS R+VDLA VA++
Sbjct: 315 KNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 352
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 204/341 (59%), Gaps = 10/341 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFK-AD 143
K+K+ INGFGRIGR R +D +++V VND + +++ KYD++ G +K +D
Sbjct: 2 KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 59
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
+KI D++T+ + K + V R+P ++PWAE G + V+E TGVF D A H++ GAKK
Sbjct: 60 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 119
Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263
V+I+AP+K D P +V GVNE Y ++ +IVSNASCTTNCLAP KV+ + GI++G M
Sbjct: 120 VVISAPSK--DAPMFVCGVNEDKYTSDI-DIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 176
Query: 264 TTTHSYTGDQXXXXX-XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRX 322
TT H+ T Q NI+P+STGAAKAV V+P L GKL G++ R
Sbjct: 177 TTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRV 236
Query: 323 XXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSST 382
EK + + + +A + A+EG LKGI+ + LVS DF SS
Sbjct: 237 PTVDVSVVDLTVRIEKAA-SYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSI 295
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 422
D+ + + D+ VK+VAWYDNEWGYS RV+DL H+ T+
Sbjct: 296 FDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 336
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/334 (43%), Positives = 196/334 (58%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V++
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 61 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 120 TGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 176
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 177 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 236
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 237 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDA 295
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYDNE GYS +V+DL AH+
Sbjct: 296 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHI 329
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 202/352 (57%), Gaps = 11/352 (3%)
Query: 75 GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY 133
G VP A L INGFGRIGR LR R D + VV +ND V+ ++LLKY
Sbjct: 13 GLVPRGSHMTATL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 68
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
DS+ G F V+ V + + ++GK++KV +DP ++PW G IV E TGVF A
Sbjct: 69 DSVHGNFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 127
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
H++ GAKKVII+AP K ++P YV+GVN +YD N++SNAS TTNCLAP K+++
Sbjct: 128 SLHLKGGAKKVIISAPPKD-NVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIIN 186
Query: 254 EELGIVKGAMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTGAAKAVSLVMPQ 310
++ GIV+G MTT HS T +Q NI+P STGAAKAV V+P
Sbjct: 187 DKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPA 246
Query: 311 LKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLV 370
L GKL G+A+R K + E++ A ++A+ GP+KGI+ +V
Sbjct: 247 LNGKLTGMAIRVPTPDVSVVDLTCKLAKPA-SIEEIYQAVKEASNGPMKGIMGYTSDDVV 305
Query: 371 SVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
S DF SS +D + + + D VK+++WYDNE GYS R+VDLA VA++
Sbjct: 306 STDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 357
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 195/334 (58%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V++
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 60 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 119 TGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 175
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 176 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 235
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 236 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDA 294
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYD E GYS +V+DL AH+
Sbjct: 295 KAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHI 328
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 195/341 (57%), Gaps = 9/341 (2%)
Query: 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA 142
+ K+KV +NGFGRIGR R +D+V +ND + ++ +YDS G F
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
VK +N + ++G I + RDP ++ W + G + V+E TGVF AG H+Q GAK
Sbjct: 59 TVK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
+VII+AP+ AD P +V+GVN + YD+ + I+SNASCTTNCLAP KV+ + GIV+G
Sbjct: 118 RVIISAPS--ADAPMFVMGVNHEKYDNSL-KIISNASCTTNCLAPLAKVIHDNFGIVEGL 174
Query: 263 MTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALR 321
MTT H+ T Q NI+P STGAAKAV V+P+L GKL G+A R
Sbjct: 175 MTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFR 234
Query: 322 XXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSS 381
EK +D+ ++A+EGPLKGIL + +VS DF SS
Sbjct: 235 VPTANVSVVDLTCRLEKPA-KYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSS 293
Query: 382 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
T D+ + + D VK+++WYDNE+GYS RVVDL +A+K
Sbjct: 294 TFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 334
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 195/341 (57%), Gaps = 9/341 (2%)
Query: 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA 142
+ K+KV +NGFGRIGR R +D+V +ND + ++ +YDS G F
Sbjct: 4 MGKVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG 61
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
VK +N + ++G I + RDP ++ W + G + V+E TGVF AG H+Q GAK
Sbjct: 62 TVK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAK 120
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
+VII+AP+ AD P +V+GVN + YD+ + I+SNASCTTNCLAP KV+ + GIV+G
Sbjct: 121 RVIISAPS--ADAPMFVMGVNHEKYDNSL-KIISNASCTTNCLAPLAKVIHDNFGIVEGL 177
Query: 263 MTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALR 321
MTT H+ T Q NI+P STGAAKAV V+P+L GKL G+A R
Sbjct: 178 MTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFR 237
Query: 322 XXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSS 381
EK +D+ ++A+EGPLKGIL + +VS DF SS
Sbjct: 238 VPTANVSVVDLTCRLEKPA-KYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSS 296
Query: 382 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
T D+ + + D VK+++WYDNE+GYS RVVDL +A+K
Sbjct: 297 TFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 337
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 195/334 (58%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V++
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 61 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNAS TTNCLAP KV+++ GI++G MTT
Sbjct: 120 TGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTV 176
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 177 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 236
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 237 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVXTSVFDA 295
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYDNE GYS +V+DL AH+
Sbjct: 296 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHI 329
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/336 (44%), Positives = 197/336 (58%), Gaps = 9/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGR +R R + ++VV +ND + A+++ KYDS G + +V
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 67
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D++ I VDGK I RDP LPW +DI I+ TGVF + A KHI AGAKKV+
Sbjct: 68 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 126
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP+ A P +V+GVNE+ Y ++ IVSNASCTTNCLAP KV+++ GI +G MTT
Sbjct: 127 ITAPSSTA--PMFVMGVNEEKYTSDL-KIVSNASCTTNCLAPLAKVINDAFGIEEGLMTT 183
Query: 266 THSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
HS T Q NI+P+STGAAKAV V+P+L+GKL G+A R
Sbjct: 184 VHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 243
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ T +++ + AAEG LKG+L + +VS DF SS D
Sbjct: 244 VDVSVVDLTVKLNKE-TTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFD 302
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
+S + + VK+V+WYDNE+GYS RVVDL VA
Sbjct: 303 ASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 338
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/336 (44%), Positives = 197/336 (58%), Gaps = 9/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGR +R R + ++VV +ND + A+++ KYDS G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D++ I VDGK I RDP LPW +DI I+ TGVF + A KHI AGAKKV+
Sbjct: 60 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP+ A P +V+GVNE+ Y ++ IVSNASCTTNCLAP KV+++ GI +G MTT
Sbjct: 119 ITAPSSTA--PMFVMGVNEEKYTSDL-KIVSNASCTTNCLAPLAKVINDAFGIEEGLMTT 175
Query: 266 THSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
HS T Q NI+P+STGAAKAV V+P+L+GKL G+A R
Sbjct: 176 VHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 235
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
K+ T +++ + AAEG LKG+L + +VS DF SS D
Sbjct: 236 VDVSVVDLTVKLNKE-TTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFD 294
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
+S + + VK+V+WYDNE+GYS RVVDL VA
Sbjct: 295 ASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 193/339 (56%), Gaps = 9/339 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADV 144
+L V INGFGRIGR LR + + VV VND + ++ KYDS G +K V
Sbjct: 7 ELTVGINGFGRIGRLVLRAC---MEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + VD I V ++P Q+PW +G V+E TGV++ A HI AGA++V
Sbjct: 64 EFRNGQLV-VDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+I+AP+ D P +V+GVNE DY+ NIVSNASCTTNCLAP KV+ E GIV+G MT
Sbjct: 123 VISAPSP--DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMT 180
Query: 265 TTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXX 323
T HSYT Q NI+P STGAAKAV+ V+P+LKGKL G+A R
Sbjct: 181 TVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVP 240
Query: 324 XXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
+ + + A + AA+GP+ GILA + +VS DF SS
Sbjct: 241 TPDVSVVDLTCRLAQPAPYSA-IKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIF 299
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D+ + + D+ VK+++WYDNE+GYS RVVDL + ++
Sbjct: 300 DAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR 338
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 192/338 (56%), Gaps = 9/338 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVK 145
+KV +NGFGRIGR R +DVV +ND + ++ +YDS G F VK
Sbjct: 1 VKVGVNGFGRIGRLVTRA--AFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+N + ++GK I + RDP + W + G + V+E TGVF AG H++ GAK+VI
Sbjct: 59 -AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 117
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
I+AP+ AD P +V+GVN + YD+ + IVSNAS TTNCLAP KV+ + GIV+G MTT
Sbjct: 118 ISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTT 174
Query: 266 THSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+ T Q NI+P STGAAKAV V+P+L GKL G+A R
Sbjct: 175 VHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPT 234
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK +D+ ++A+EGPLKGIL + +VS DF SST D
Sbjct: 235 PNVSVVDLTCRLEKAA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFD 293
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
+ + + D VK+++WYDNE+GYS RVVDL +A+K
Sbjct: 294 AGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 331
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 193/339 (56%), Gaps = 9/339 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADV 144
K+KV ++GFGRIGR R +D+V +ND + ++ +YDS G F V
Sbjct: 2 KVKVGVDGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 59
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
K D + + +DGK I + RDP + W + G V+E TGVF AG H++ GAK++
Sbjct: 60 KAEDGKLV-IDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+I+AP+ AD P +V+GVN Y + + I+SNASCTTNCLAP KV+ + GIV+G MT
Sbjct: 119 VISAPS--ADAPMFVMGVNHFKYANSL-KIISNASCTTNCLAPLAKVIHDHFGIVEGLMT 175
Query: 265 TTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXX 323
T H+ T Q N++P STGAAKAV V+P+L GKL G+A R
Sbjct: 176 TVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVP 235
Query: 324 XXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
EK +D+ ++A+EGPLKGIL + +VS DF S+ SS
Sbjct: 236 TANVSVLDLTCRLEKPA-KYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIF 294
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D+ + + D VK+V+WYDNE+GYS+RVVDL +A+K
Sbjct: 295 DAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHMASK 333
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 190/330 (57%), Gaps = 10/330 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR + VV VND ++ ++ KYDS G FK +VK+
Sbjct: 2 KIGINGFGRIGRLVLRT---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKV 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKVII
Sbjct: 59 EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+ AD P +V GVN + Y ++ +VSNASCTTNCLAP KV+ E IV+G MTT
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM-KVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 174
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 175 HAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTP 234
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
K+ + +D+ AA + A+EGPL+G+L + +VS DF + SS D+
Sbjct: 235 NVSVVDLTVRLGKE-CSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDA 293
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
+ + VKVV+WYDNE+GYSQRV+DL
Sbjct: 294 KAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 189/330 (57%), Gaps = 10/330 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR + VV VND ++ ++ KYDS G FK +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKVII
Sbjct: 59 EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+ AD P +V GVN + Y ++ +VSNASCTTNCLAP KV+ E IV+G MTT
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM-KVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 174
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 175 HAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTP 234
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
K+ + +D+ AA + A+EGPL+G+L + +VS DF + SS D+
Sbjct: 235 NVSVVDLTVRLGKE-CSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDA 293
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
+ + VKVV+WYDNE+GYSQRV+DL
Sbjct: 294 KAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 188/330 (56%), Gaps = 10/330 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR VV VND ++ ++ KYDS G FK +VK+
Sbjct: 3 KIGINGFGRIGRLVLRA---ALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKV+I
Sbjct: 60 EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVI 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+ AD P +V GVN + Y ++ +VSNASCTTNCLAP KV+ E IV+G MTT
Sbjct: 119 SAPS--ADAPMFVCGVNLEKYSKDM-TVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 175
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 176 HAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTP 235
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
K+ + +D+ AA + A+EGPL+G L + +VS DF + SS D+
Sbjct: 236 DVSVVDLTVRLGKE-CSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDA 294
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
+ + VKVV+WYDNE+GYSQRV+DL
Sbjct: 295 KAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 324
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 188/330 (56%), Gaps = 10/330 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR VV VND ++ ++ KYDS G FK +VK+
Sbjct: 2 KIGINGFGRIGRLVLRA---ALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKV+I
Sbjct: 59 EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVI 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+ AD P +V GVN + Y ++ +VSNASCTTNCLAP KV+ E IV+G MTT
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM-TVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTV 174
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 175 HAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTP 234
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
K+ + +D+ AA + A+EGPL+G L + +VS DF + SS D+
Sbjct: 235 DVSVVDLTVRLGKE-CSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDA 293
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
+ + VKVV+WYDNE+GYSQRV+DL
Sbjct: 294 KAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 193/340 (56%), Gaps = 11/340 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR R R D ++V+ +ND + +LL+YDS+ G + +V
Sbjct: 25 KLGINGFGRIGRLVFRAAMERGD--VEVLAINDPFMSLDYMVYLLRYDSVHGHYPGEVSH 82
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + I V GK + V + ++P +PW + G+ + E TG+F+ A H+ GAKKVI+
Sbjct: 83 KDGKLI-VGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIM 141
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP K D P +V+GVN Y IVSNASCTTNCLAP K++ ++ GIV+G MTT
Sbjct: 142 SAPPKD-DTPMFVMGVNNDQYKSSDV-IVSNASCTTNCLAPLAKIVHDKFGIVEGLMTTV 199
Query: 267 HSYTGDQXXX---XXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXX 323
H+ T +Q NI+P STGAAKAV ++P L GKL G+A R
Sbjct: 200 HAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVP 259
Query: 324 XXXXXXXXXXXXXEKKGITAEDVNAAFRKAA-EGPLKGILAVCDVPLVSVDFRCSDVSST 382
K ED+ AA ++AA GP+KGI++ D +VS DF SS
Sbjct: 260 VPDVSVVDLTCKLAKPA-KYEDIVAAVKEAATSGPMKGIISYTDEEVVSSDFVHCKFSSV 318
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D + +++ D VK+V+WYDNEWGYS R+V+LAH ++ +
Sbjct: 319 FDINAGIMLNDTFVKLVSWYDNEWGYSNRLVELAHYMSVQ 358
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 201/355 (56%), Gaps = 19/355 (5%)
Query: 85 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
A +KV INGFGRIGR + C G + +DVV V D S + ++ +K+D++ G K
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 142 ADVKIVDN-------ETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
V+ V + + + V+G IK V + R+P LPW +LG+D VIE TG+F D A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
HI+ GAKKV+I+APA G T V+GVN+ +Y ++VSNASCTTNCLAP V V+
Sbjct: 121 EGHIKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLT 179
Query: 254 EE-LGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQL 311
+E GI G MTT HSYT Q NI+P++TGAAKAV +V+P
Sbjct: 180 KENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 239
Query: 312 KGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVS 371
KGKL G++ R + + ++++ A +KAA+ +KGIL D LVS
Sbjct: 240 KGKLTGMSFRVPTPDVSVVDLTFRATRD-TSIQEIDKAIKKAAQTYMKGILGFTDEELVS 298
Query: 372 VDFRCSDVSSTIDSSLTM---VMGDD-MVKVVAWYDNEWGYSQRVVDLAHLVATK 422
DF + SS DS T+ + G+ KVV+WYDNEW YS RVVDL +A K
Sbjct: 299 ADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAK 353
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 201/355 (56%), Gaps = 19/355 (5%)
Query: 85 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
A +KV INGFGRIGR + C G + +DVV V D S + ++ +K+D++ G K
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 142 ADVKIVDN-------ETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
V+ V + + + V+G IK V + R+P LPW +LG+D VIE TG+F D A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
HI+ GAKKV+I+APA G T V+GVN+ +Y ++VSNASCTTNCLAP V V+
Sbjct: 121 EGHIKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLT 179
Query: 254 EE-LGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQL 311
+E GI G MTT HSYT Q NI+P++TGAAKAV +V+P
Sbjct: 180 KENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 239
Query: 312 KGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVS 371
KGKL G++ R + + ++++ A +KAA+ +KGIL D LVS
Sbjct: 240 KGKLTGMSFRVPTPDVSVVDLTFRATRD-TSIQEIDKAIKKAAQTYMKGILGFTDEELVS 298
Query: 372 VDFRCSDVSSTIDSSLTM---VMGDD-MVKVVAWYDNEWGYSQRVVDLAHLVATK 422
DF + SS DS T+ + G+ KVV+WYDNEW YS RVVDL +A K
Sbjct: 299 ADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAK 353
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 188/330 (56%), Gaps = 10/330 (3%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR + VV VND ++ ++ KYDS G FK +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKVII
Sbjct: 59 EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+ AD P +V GVN + Y ++ +VSNAS TTNCLAP KV+ E IV+G MTT
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM-KVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTV 174
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 175 HAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTP 234
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
K+ + +D+ AA + A+EGPL+G+L + +VS DF + SS D+
Sbjct: 235 NVSVVDLTVRLGKE-CSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDA 293
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
+ + VKVV+WYDNE+GYSQRV+DL
Sbjct: 294 KAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 191/334 (57%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND ++ LKYDS G F V++
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYXAYXLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV+
Sbjct: 60 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G TT
Sbjct: 119 TGPSKD-NTPXFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTV 175
Query: 267 HSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXX 325
H+ T Q NI+P+STGAAKAV V+P+L GKL G A R
Sbjct: 176 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTP 235
Query: 326 XXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
EK T E + AA + AAEG KG+L + +VS DF +S D+
Sbjct: 236 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDA 294
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYDNE GYS +V+DL AH+
Sbjct: 295 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHI 328
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 190/338 (56%), Gaps = 9/338 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVK 145
+KV INGFGRIGR LR + + VV VND + ++ KYDS G +K V+
Sbjct: 2 VKVGINGFGRIGRLVLRVC---MEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVE 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
N + VD I V ++P ++PW+ +G V+E TGV++ A HI +GA++VI
Sbjct: 59 H-KNGRLVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVI 117
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
+TAP+ D P V+GVNEKDY+ +VSNAS TTNCLAP KV+ E GIV+G MTT
Sbjct: 118 VTAPS--PDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTT 175
Query: 266 THSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YT Q NI+P+STGAAKAV V+P+L GKL G+A R
Sbjct: 176 VHAYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPT 235
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
+ + + A + AA+GP+ GILA + +VS DF SS D
Sbjct: 236 PNVSVVDLTCRLAQPA-SYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFD 294
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
+ + + D+ VK+V+WYDNE+GYS RVVDL + ++
Sbjct: 295 AKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYMFSR 332
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 199/353 (56%), Gaps = 19/353 (5%)
Query: 87 LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
+KV INGFGRIGR + C G + +DVV V D + + ++ +KYDS+ G FK
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 144 VK-------IVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
V + ++T+ V+G +++ V + R+P LPW +LG++ VIE TG+F A
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255
H++ GA+KV+I+APA G T+V+GVN +Y+ ++VSNASCTTNCLAP V V+ +E
Sbjct: 123 HLRGGARKVVISAPASGG-AKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKE 181
Query: 256 -LGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKG 313
GI G MTT HSYT Q NI+P++TGAAKAV +V+P +G
Sbjct: 182 GFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQG 241
Query: 314 KLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVD 373
KL G+A R + + ++++AA ++A++ +K IL D LVS D
Sbjct: 242 KLTGMAFRVPTADVSVVDLTFIATRD-TSIKEIDAALKRASKTYMKNILGYTDEELVSAD 300
Query: 374 FRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
F SS DS T+ K+V+WYDNEWGYS RVVDL +A +
Sbjct: 301 FISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAAR 353
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 19/353 (5%)
Query: 87 LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
+KV INGFGRIGR + C G + +DVV V D + + ++ ++YD++ G FK +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 V-------KIVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
V + ++T+ V+G +++ V + R+P LPW +LG++ VIE TG+F A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255
H++ GA+KV+I+APA G T V+GVN +Y+ ++VSNASCTTNCLAP V V+ +E
Sbjct: 123 HLRGGARKVVISAPASGG-AKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 256 -LGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKG 313
G+ G MTT HSYT Q NI+P++TGAAKAV +V+P +G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 314 KLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVD 373
KL G++ R + + ++++AA ++A++ +KGIL D LVS D
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARD-TSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 374 FRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
F + SS DS T+ K+V+WYDNEWGYS RVVDL +A+K
Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 201/353 (56%), Gaps = 19/353 (5%)
Query: 87 LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
+KV INGFGRIGR + C G + +DVV V D + + ++ ++YD++ G FK +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 V-------KIVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
V + ++T+ V+G +++ V + R+P LPW +LG++ VIE TG+F A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255
H++ GA+KV+I+APA G T V+GVN +Y+ ++VSNAS TTNCLAP V V+ +E
Sbjct: 123 HLRGGARKVVISAPASGG-AKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE 181
Query: 256 -LGIVKGAMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVMPQLKG 313
G+ G MTT HSYT Q NI+P++TGAAKAV +V+P +G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 314 KLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVD 373
KL G++ R + + ++++AA ++A++ +KGIL D LVS D
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARD-TSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 374 FRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
F + SS DS T+ K+V+WYDNEWGYS RVVDL +A+K
Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 190/338 (56%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 61 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 120 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 177
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 178 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 237
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 238 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 293
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 294 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 190/338 (56%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 11 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 68
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 69 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 128 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 185
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 186 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 245
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 246 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 301
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 302 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 339
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 190/338 (56%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 5 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 62
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 63 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 122 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 179
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 180 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 239
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 240 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 295
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 296 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 333
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 190/338 (56%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 6 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 63
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 64 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 123 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 180
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 181 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 240
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 241 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 296
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 297 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 334
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 190/338 (56%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 61 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 120 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 177
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
++YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 178 NAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 237
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 238 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 293
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 294 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 189/338 (55%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 61 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS AS TTN LAP KV++++ G+V+G MTT
Sbjct: 120 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTI 177
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 178 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 237
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 238 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 293
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 294 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 189/338 (55%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 61 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS AS TTN LAP KV++++ G+V+G MTT
Sbjct: 120 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTI 177
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
H+YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 178 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 237
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 238 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 293
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 294 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 189/338 (55%), Gaps = 15/338 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R ++ L+VV VND +HLLKYD++ G F +V++
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 61 VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G D+ T V N ++ D +VS AS TTN LAP KV++++ G+V+G MTT
Sbjct: 120 SAPATG-DLKTIVFNTNHQELDGS-ETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTI 177
Query: 267 HSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
++YTGDQ NI+P STGAAKA+ V+P++ GKL+G A R
Sbjct: 178 NAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 237
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
EK+ +T E VN A + A+ + +VS D S D
Sbjct: 238 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFD 293
Query: 385 SSLTMVM--GD-DMVKVVAWYDNEWGYS-QRVVDLAHL 418
++ T VM GD +VKV AWYDNE Y+ Q V LA+L
Sbjct: 294 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 179/337 (53%), Gaps = 6/337 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN +R + GR+ + + VV +N+ +HLLKYD+ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ + P T V GVN+ E IVSNASCTTNC+ P +K++D+ GI G +T
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAE-HRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T HS DQ +I+P T A ++ PQ + IA+R
Sbjct: 180 TIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPT 239
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
KK + A +VN +KAA+G GI+ ++PLVSVDF S+ +D
Sbjct: 240 INVTAIDLSVTV-KKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 298
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
+ T V G ++K + W DNEWG++ R++D +AT
Sbjct: 299 GTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 179/337 (53%), Gaps = 6/337 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN +R + GR+ + + VV +N+ +HLLKYD+ G F +V
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 61 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 119
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ + P T V GVN+ E IVSNASCTTNC+ P +K++D+ GI G +T
Sbjct: 120 LFSHPGSNDLDATVVYGVNQDQLRAE-HRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 178
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T HS DQ +I+P T A ++ PQ + IA+R
Sbjct: 179 TIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPT 238
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
KK + A +VN +KAA+G GI+ ++PLVSVDF S+ +D
Sbjct: 239 INVTAIDLSVTV-KKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 297
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
+ T V G ++K + W DNEWG++ R++D +AT
Sbjct: 298 GTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 334
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 177/337 (52%), Gaps = 6/337 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN +R + GR+ + + VV +N+ +HLLKYD+ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ + P T V GVN+ E IVSNAS TTN + P +K++D+ GI G +T
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAE-HRIVSNASATTNSIIPVIKLLDDAYGIESGTVT 179
Query: 265 TTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXX 324
T HS DQ +I+P T A ++ PQ + IA+R
Sbjct: 180 TIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPT 239
Query: 325 XXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
KK + A +VN +KAA+G GI+ ++PLVSVDF S+ +D
Sbjct: 240 INVTAIDLSVTV-KKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 298
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
+ T V G ++K + W DNEWG++ R++D +AT
Sbjct: 299 GTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 211 KGADIPTYVVGVN-EKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSY 269
K D+P V VN E+D I++N +CTT P +KV+ +E +V+ +++ +
Sbjct: 99 KDPDVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAV 158
Query: 270 TG 271
+G
Sbjct: 159 SG 160
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 211 KGADIPTYVVGVN-EKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSY 269
K D+P V VN E+D I++N +CTT P +KV+ +E +V+ +++ +
Sbjct: 117 KDPDVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAV 176
Query: 270 TG 271
+G
Sbjct: 177 SG 178
>pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|B Chain B, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|C Chain C, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|D Chain D, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4M|A Chain A, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|B Chain B, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|C Chain C, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
Length = 213
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 25/104 (24%)
Query: 362 LAVCDVPLVSVDFR------CSDVSSTI---------DSSLTMVMGDD-MVKVVAWYDNE 405
LA+ D PL ++D R S + T+ D L ++G D ++ WY+ E
Sbjct: 62 LAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYE 121
Query: 406 WGYSQRVVDLAHLVATKWPG----VAAGGSGDPLEDFCQTNPAD 445
++D AHL+ + PG +A LED NP D
Sbjct: 122 -----TILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPED 160
>pdb|2LJ9|A Chain A, Partial 3d Structure Of The C-Terminal Part Of The Free
Arabidopsis Thaliana Cp12-2 In Its Oxidized Form
Length = 99
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 433 DPLEDFCQTNPADEECKVYE 452
DPLE++C+ NP EC+ Y+
Sbjct: 79 DPLEEYCKDNPETNECRTYD 98
>pdb|3QV1|G Chain G, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|H Chain H, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|I Chain I, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|I Chain I, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|J Chain J, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|K Chain K, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|L Chain L, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|M Chain M, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|N Chain N, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 82
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 433 DPLEDFCQTNPADEECKVYE 452
DPLE++C+ NP EC+ Y+
Sbjct: 62 DPLEEYCKDNPETNECRTYD 81
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE 224
+I T V+ DGPG+ + I+A K+ P+KG + T VG NE
Sbjct: 470 LITVTPVYADGPGSPESIKAYLKQA---PPSKGPTVRTKKVGKNE 511
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE 224
+I T V+ DGPG+ + I+A K+ P+KG + T VG NE
Sbjct: 171 LITVTPVYADGPGSPESIKAYLKQA---PPSKGPTVRTKKVGKNE 212
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE 224
+I T V+ DGPG+ + I+A K+ P+KG + T VG NE
Sbjct: 171 LITVTPVYADGPGSPESIKAYLKQA---PPSKGPTVRTKKVGKNE 212
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSL 136
+VAI GFG +G R +H D VV V D +G V N + + YD L
Sbjct: 237 RVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGIDPYDLL 283
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSL 136
+VAI GFG +G R +H D VV V D +G V N + + YD L
Sbjct: 221 RVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGIDPYDLL 267
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 372 VDFRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDN----EWGYSQRVVDLAHLVATKW 423
VD +D+ + + L VM +M V W+++ G+ QR+ +L +A+ +
Sbjct: 376 VDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAY 435
Query: 424 PGVAAGGS 431
PGV G+
Sbjct: 436 PGVYMTGA 443
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 114 DVVVVNDSGGVK-----NASHLLK-YDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167
D +V N +GGV N L + + LL K +V D + +D + + + S P
Sbjct: 95 DQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKP 154
Query: 168 LQLPWAELGIDIVIEGTGV--FVDGPGAGKHIQAG 200
+++P A + D++++ TG F + PG I AG
Sbjct: 155 VEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAG 189
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 133 YDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 187
+ LL + +V +D +T ++ + + + S P+++P A L DI+++ TG
Sbjct: 120 HGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGAL 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,500,551
Number of Sequences: 62578
Number of extensions: 505892
Number of successful extensions: 1847
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 86
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)