Query 012940
Match_columns 453
No_of_seqs 232 out of 1853
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 8E-138 2E-142 1070.3 38.1 441 3-453 1-442 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 4E-120 9E-125 931.7 36.2 384 33-423 11-394 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 1E-118 3E-123 907.9 31.2 339 84-424 1-356 (361)
4 PRK07403 glyceraldehyde-3-phos 100.0 4E-115 8E-120 881.3 34.0 334 87-422 2-335 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 4E-114 8E-119 872.7 34.1 330 85-421 1-331 (331)
6 PTZ00023 glyceraldehyde-3-phos 100.0 1E-113 3E-118 870.2 33.0 332 85-422 1-336 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 1E-112 3E-117 864.2 33.4 335 85-424 1-335 (343)
8 PLN02272 glyceraldehyde-3-phos 100.0 4E-111 8E-116 869.6 38.4 330 87-422 86-417 (421)
9 PRK13535 erythrose 4-phosphate 100.0 2E-109 3E-114 841.4 32.9 331 87-421 2-334 (336)
10 PRK08955 glyceraldehyde-3-phos 100.0 1E-109 3E-114 842.1 31.6 331 85-421 1-332 (334)
11 PLN02358 glyceraldehyde-3-phos 100.0 4E-109 9E-114 839.4 34.9 330 86-421 5-337 (338)
12 COG0057 GapA Glyceraldehyde-3- 100.0 5E-109 1E-113 826.2 32.2 333 86-423 1-334 (335)
13 PTZ00353 glycosomal glyceralde 100.0 2E-108 3E-113 833.9 34.3 331 85-424 1-338 (342)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 1E-108 3E-113 832.3 30.7 323 88-414 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 6E-107 1E-111 842.6 32.4 335 86-424 127-473 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 5E-105 1E-109 806.3 31.6 323 88-414 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.1E-80 2.5E-85 604.9 13.4 283 97-422 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 1.5E-53 3.3E-58 431.9 22.7 236 89-355 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 6.7E-50 1.5E-54 367.1 11.1 157 245-402 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 3.5E-46 7.5E-51 380.1 22.6 260 86-379 1-273 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 7.1E-47 1.5E-51 345.2 12.1 150 87-240 1-151 (151)
22 PRK06901 aspartate-semialdehyd 100.0 1.6E-42 3.4E-47 348.5 20.3 234 86-354 3-254 (322)
23 smart00846 Gp_dh_N Glyceraldeh 100.0 1E-41 2.2E-46 310.5 16.4 149 87-240 1-149 (149)
24 TIGR01745 asd_gamma aspartate- 100.0 1.8E-39 4E-44 332.3 17.8 238 87-354 1-298 (366)
25 PRK14874 aspartate-semialdehyd 100.0 4.7E-39 1E-43 326.6 20.3 233 87-353 2-268 (334)
26 TIGR01296 asd_B aspartate-semi 100.0 4.9E-39 1.1E-43 327.4 20.1 235 88-354 1-272 (339)
27 COG0136 Asd Aspartate-semialde 100.0 1.2E-38 2.5E-43 321.3 21.6 298 86-417 1-331 (334)
28 PRK06728 aspartate-semialdehyd 100.0 2.1E-35 4.6E-40 301.3 22.0 235 86-354 5-277 (347)
29 PRK06598 aspartate-semialdehyd 100.0 3E-35 6.4E-40 302.0 20.4 237 87-354 2-300 (369)
30 PRK08040 putative semialdehyde 100.0 1.7E-31 3.6E-36 271.9 25.0 295 85-421 3-332 (336)
31 PLN02383 aspartate semialdehyd 100.0 8.8E-31 1.9E-35 267.5 20.8 240 82-353 3-276 (344)
32 PRK05671 aspartate-semialdehyd 100.0 1.6E-30 3.4E-35 264.9 21.9 236 86-354 4-269 (336)
33 TIGR00978 asd_EA aspartate-sem 100.0 1.1E-29 2.4E-34 258.6 19.8 258 87-372 1-282 (341)
34 PRK08664 aspartate-semialdehyd 100.0 4.1E-29 8.8E-34 255.2 23.1 242 85-355 2-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 2.3E-24 5E-29 220.0 23.0 299 85-421 1-329 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.9 7.6E-24 1.7E-28 216.5 18.5 298 87-422 1-333 (346)
37 PLN02968 Probable N-acetyl-gam 99.9 2.7E-23 5.8E-28 215.2 20.9 301 84-421 36-367 (381)
38 KOG4777 Aspartate-semialdehyde 99.9 5.6E-22 1.2E-26 193.0 11.4 238 88-354 5-277 (361)
39 PRK11863 N-acetyl-gamma-glutam 99.9 2.5E-20 5.5E-25 188.5 19.5 221 85-355 1-237 (313)
40 TIGR01851 argC_other N-acetyl- 99.8 2.9E-17 6.2E-22 165.8 18.0 220 87-354 2-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.5 5.5E-14 1.2E-18 141.7 8.6 156 86-270 4-160 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.3 9.6E-12 2.1E-16 124.8 10.5 161 86-280 1-167 (285)
43 COG0002 ArgC Acetylglutamate s 99.2 2.9E-09 6.3E-14 108.9 19.8 237 85-356 1-272 (349)
44 PF01118 Semialdhyde_dh: Semia 99.0 2.3E-10 4.9E-15 100.2 2.3 113 88-228 1-119 (121)
45 PF02774 Semialdhyde_dhC: Semi 99.0 2.1E-09 4.5E-14 101.1 8.4 103 249-353 1-132 (184)
46 smart00859 Semialdhyde_dh Semi 98.2 3.2E-06 7E-11 73.6 6.3 113 88-227 1-120 (122)
47 PRK13301 putative L-aspartate 98.0 5.4E-06 1.2E-10 82.8 4.3 146 85-271 1-151 (267)
48 TIGR01921 DAP-DH diaminopimela 97.8 0.0014 3E-08 67.4 17.8 88 86-207 3-90 (324)
49 KOG4354 N-acetyl-gamma-glutamy 97.7 0.001 2.2E-08 65.9 13.9 284 79-405 12-309 (340)
50 PF02672 CP12: CP12 domain; I 97.6 2.1E-05 4.6E-10 63.8 1.1 23 431-453 49-71 (71)
51 PRK13303 L-aspartate dehydroge 97.6 0.00016 3.4E-09 71.9 7.2 91 87-209 2-93 (265)
52 PRK06270 homoserine dehydrogen 97.4 0.0005 1.1E-08 70.8 8.1 152 85-266 1-175 (341)
53 PLN00204 CP12 gene family prot 97.3 9.6E-05 2.1E-09 65.6 1.2 24 430-453 103-126 (126)
54 COG1712 Predicted dinucleotide 97.3 0.00061 1.3E-08 66.8 6.8 94 87-210 1-94 (255)
55 TIGR00036 dapB dihydrodipicoli 97.2 0.00049 1.1E-08 68.5 5.9 95 87-206 2-97 (266)
56 PRK13302 putative L-aspartate 97.2 0.00082 1.8E-08 67.2 7.2 91 86-206 6-96 (271)
57 PF01113 DapB_N: Dihydrodipico 97.1 0.00074 1.6E-08 59.7 5.3 95 87-206 1-96 (124)
58 PRK06349 homoserine dehydrogen 97.1 0.00052 1.1E-08 72.8 5.0 95 86-209 3-105 (426)
59 PRK13304 L-aspartate dehydroge 97.0 0.0018 3.9E-08 64.4 7.6 90 87-207 2-91 (265)
60 PRK00048 dihydrodipicolinate r 97.0 0.0012 2.7E-08 65.3 6.0 87 87-206 2-89 (257)
61 PRK06813 homoserine dehydrogen 97.0 0.00099 2.2E-08 69.1 5.4 37 85-121 1-44 (346)
62 PRK08374 homoserine dehydrogen 96.9 0.0011 2.4E-08 68.3 5.1 103 85-201 1-116 (336)
63 COG0460 ThrA Homoserine dehydr 96.8 0.0028 6E-08 65.5 6.7 37 85-121 2-45 (333)
64 COG0289 DapB Dihydrodipicolina 96.7 0.0062 1.4E-07 60.9 8.4 97 85-206 1-98 (266)
65 PRK06392 homoserine dehydrogen 96.6 0.0057 1.2E-07 63.0 7.3 35 87-121 1-40 (326)
66 PF01408 GFO_IDH_MocA: Oxidore 96.5 0.0068 1.5E-07 51.7 6.1 94 87-210 1-95 (120)
67 PRK11579 putative oxidoreducta 96.4 0.012 2.5E-07 60.3 8.5 92 86-209 4-96 (346)
68 COG4569 MhpF Acetaldehyde dehy 96.4 0.013 2.8E-07 57.0 8.1 73 176-254 71-144 (310)
69 PF03447 NAD_binding_3: Homose 95.7 0.0013 2.9E-08 56.8 -2.1 87 93-208 1-89 (117)
70 cd01076 NAD_bind_1_Glu_DH NAD( 95.6 0.11 2.5E-06 50.8 10.9 134 83-249 28-168 (227)
71 PRK09414 glutamate dehydrogena 95.6 0.037 8E-07 59.4 7.8 100 85-206 231-341 (445)
72 PRK05447 1-deoxy-D-xylulose 5- 95.5 0.015 3.2E-07 61.2 4.6 115 87-206 2-120 (385)
73 PLN02775 Probable dihydrodipic 95.5 0.037 7.9E-07 56.2 7.1 99 84-207 9-111 (286)
74 COG0673 MviM Predicted dehydro 95.1 0.074 1.6E-06 53.4 7.9 95 85-209 2-99 (342)
75 PRK10206 putative oxidoreducta 95.1 0.04 8.6E-07 56.7 6.1 94 86-209 1-96 (344)
76 cd05211 NAD_bind_Glu_Leu_Phe_V 94.9 0.23 4.9E-06 48.4 10.5 34 85-121 22-55 (217)
77 cd05313 NAD_bind_2_Glu_DH NAD( 94.7 0.12 2.7E-06 51.6 8.2 106 85-208 37-153 (254)
78 PLN02700 homoserine dehydrogen 94.5 0.066 1.4E-06 56.4 5.8 37 85-121 2-44 (377)
79 PLN02696 1-deoxy-D-xylulose-5- 94.3 0.12 2.6E-06 55.5 7.4 117 87-208 58-180 (454)
80 COG4091 Predicted homoserine d 93.6 0.18 3.8E-06 52.8 6.8 93 85-187 16-112 (438)
81 PRK05472 redox-sensing transcr 93.5 0.13 2.8E-06 49.4 5.5 96 86-209 84-179 (213)
82 PF02826 2-Hacid_dh_C: D-isome 93.3 0.11 2.4E-06 48.4 4.5 32 87-121 37-68 (178)
83 TIGR02130 dapB_plant dihydrodi 93.1 0.2 4.2E-06 50.8 6.2 89 87-203 1-96 (275)
84 COG0569 TrkA K+ transport syst 93.1 0.19 4.1E-06 49.0 5.9 98 87-210 1-102 (225)
85 COG2344 AT-rich DNA-binding pr 92.7 0.2 4.4E-06 48.3 5.3 96 87-210 85-180 (211)
86 PRK14030 glutamate dehydrogena 92.5 0.6 1.3E-05 50.3 9.2 104 86-206 228-341 (445)
87 PLN02477 glutamate dehydrogena 92.2 1 2.2E-05 48.1 10.4 33 86-121 206-238 (410)
88 PTZ00079 NADP-specific glutama 92.2 0.55 1.2E-05 50.7 8.5 103 86-206 237-350 (454)
89 PF05368 NmrA: NmrA-like famil 92.1 0.25 5.3E-06 47.1 5.2 96 89-209 1-103 (233)
90 PRK09436 thrA bifunctional asp 92.0 0.17 3.7E-06 58.2 4.7 37 85-121 464-506 (819)
91 PRK09466 metL bifunctional asp 91.9 0.13 2.7E-06 59.2 3.5 38 84-121 456-500 (810)
92 CHL00194 ycf39 Ycf39; Provisio 91.8 0.4 8.6E-06 48.1 6.5 31 87-120 1-32 (317)
93 PF13460 NAD_binding_10: NADH( 91.7 0.3 6.6E-06 44.3 5.2 30 89-121 1-31 (183)
94 PLN00016 RNA-binding protein; 91.6 0.55 1.2E-05 48.5 7.4 39 80-121 46-89 (378)
95 PRK08410 2-hydroxyacid dehydro 90.6 0.3 6.5E-06 49.8 4.4 32 86-120 145-176 (311)
96 TIGR03736 PRTRC_ThiF PRTRC sys 90.2 0.62 1.3E-05 46.4 6.0 109 84-197 9-127 (244)
97 PRK08229 2-dehydropantoate 2-r 90.1 0.94 2E-05 45.9 7.5 33 85-120 1-33 (341)
98 PRK06487 glycerate dehydrogena 90.0 0.36 7.8E-06 49.4 4.4 32 86-120 148-179 (317)
99 PF13380 CoA_binding_2: CoA bi 90.0 1.3 2.8E-05 38.8 7.2 83 88-209 2-88 (116)
100 PF03807 F420_oxidored: NADP o 89.8 0.61 1.3E-05 38.3 4.9 43 88-131 1-43 (96)
101 PRK06932 glycerate dehydrogena 89.2 0.45 9.7E-06 48.7 4.3 31 86-119 147-177 (314)
102 PRK14031 glutamate dehydrogena 89.2 1.2 2.6E-05 48.0 7.7 104 86-208 228-342 (444)
103 PF00056 Ldh_1_N: lactate/mala 88.9 2.1 4.5E-05 38.7 8.0 23 87-109 1-24 (141)
104 KOG2741 Dimeric dihydrodiol de 88.8 1.3 2.9E-05 46.1 7.4 101 84-209 4-104 (351)
105 PTZ00117 malate dehydrogenase; 88.7 1.8 3.8E-05 44.4 8.3 24 86-109 5-28 (319)
106 PLN02819 lysine-ketoglutarate 88.7 1 2.2E-05 53.2 7.3 92 86-202 569-674 (1042)
107 cd01075 NAD_bind_Leu_Phe_Val_D 88.6 1.7 3.6E-05 41.6 7.5 30 87-119 29-58 (200)
108 TIGR03649 ergot_EASG ergot alk 88.4 1.3 2.9E-05 43.3 6.9 30 88-120 1-31 (285)
109 PF03435 Saccharop_dh: Sacchar 88.3 0.4 8.7E-06 49.7 3.3 95 89-207 1-96 (386)
110 PF10727 Rossmann-like: Rossma 88.2 0.42 9.1E-06 42.9 2.9 33 86-121 10-42 (127)
111 PLN02928 oxidoreductase family 88.0 0.61 1.3E-05 48.4 4.4 33 86-121 159-191 (347)
112 PLN03209 translocon at the inn 87.9 5 0.00011 44.7 11.6 31 87-120 81-112 (576)
113 COG1052 LdhA Lactate dehydroge 87.7 0.82 1.8E-05 47.2 5.1 33 86-121 146-178 (324)
114 PRK07574 formate dehydrogenase 87.6 0.66 1.4E-05 49.1 4.4 32 86-120 192-223 (385)
115 COG0111 SerA Phosphoglycerate 87.6 0.68 1.5E-05 47.8 4.4 32 86-120 142-173 (324)
116 COG2910 Putative NADH-flavin r 87.6 2 4.3E-05 41.6 7.2 31 87-120 1-32 (211)
117 PRK15409 bifunctional glyoxyla 87.4 0.69 1.5E-05 47.6 4.4 31 86-119 145-176 (323)
118 PRK05476 S-adenosyl-L-homocyst 87.3 1.5 3.2E-05 47.1 6.8 30 87-119 213-242 (425)
119 PRK06436 glycerate dehydrogena 87.2 0.75 1.6E-05 47.0 4.5 32 86-120 122-153 (303)
120 PRK07819 3-hydroxybutyryl-CoA 87.2 4.9 0.00011 40.5 10.2 30 88-120 7-36 (286)
121 PRK11880 pyrroline-5-carboxyla 87.1 0.82 1.8E-05 44.8 4.5 35 85-119 1-35 (267)
122 PRK11790 D-3-phosphoglycerate 87.0 0.76 1.6E-05 48.8 4.5 32 86-120 151-182 (409)
123 PRK13243 glyoxylate reductase; 86.7 0.81 1.8E-05 47.2 4.4 32 86-120 150-181 (333)
124 COG1748 LYS9 Saccharopine dehy 86.6 1.6 3.4E-05 46.4 6.5 98 87-207 2-99 (389)
125 TIGR01761 thiaz-red thiazoliny 86.3 1.3 2.8E-05 46.1 5.7 92 86-207 3-96 (343)
126 PRK15469 ghrA bifunctional gly 85.6 1 2.2E-05 46.1 4.5 31 87-120 137-167 (312)
127 cd08230 glucose_DH Glucose deh 85.5 7.8 0.00017 39.3 10.8 30 88-120 175-204 (355)
128 PLN02306 hydroxypyruvate reduc 84.9 1.1 2.4E-05 47.4 4.4 33 86-120 165-197 (386)
129 PF02629 CoA_binding: CoA bind 84.8 0.64 1.4E-05 39.1 2.1 90 87-208 4-94 (96)
130 PRK12480 D-lactate dehydrogena 84.7 1.2 2.6E-05 46.0 4.5 32 86-120 146-177 (330)
131 PF03446 NAD_binding_2: NAD bi 84.7 1.4 3E-05 40.4 4.5 30 87-119 2-31 (163)
132 PRK15438 erythronate-4-phospha 84.5 1.2 2.6E-05 47.0 4.5 31 86-119 116-146 (378)
133 PLN03139 formate dehydrogenase 84.4 1.1 2.4E-05 47.4 4.2 31 86-119 199-229 (386)
134 TIGR01202 bchC 2-desacetyl-2-h 84.2 4 8.6E-05 40.8 7.9 21 88-108 147-167 (308)
135 PRK08306 dipicolinate synthase 84.0 1.7 3.7E-05 44.1 5.2 32 86-120 152-183 (296)
136 PRK11559 garR tartronate semia 83.8 1.3 2.9E-05 44.0 4.3 32 85-119 1-32 (296)
137 cd00401 AdoHcyase S-adenosyl-L 83.7 2.5 5.5E-05 45.2 6.5 29 87-118 203-231 (413)
138 COG1063 Tdh Threonine dehydrog 83.6 2.5 5.5E-05 43.6 6.4 100 88-209 171-271 (350)
139 PLN02657 3,8-divinyl protochlo 82.8 4.5 9.8E-05 42.3 8.0 32 86-120 60-92 (390)
140 TIGR01915 npdG NADPH-dependent 82.6 2.1 4.5E-05 41.1 5.0 30 87-119 1-31 (219)
141 TIGR02853 spore_dpaA dipicolin 82.4 1.7 3.7E-05 43.9 4.5 31 87-120 152-182 (287)
142 PRK06223 malate dehydrogenase; 82.4 6.1 0.00013 39.7 8.5 31 87-119 3-33 (307)
143 COG0039 Mdh Malate/lactate deh 82.2 2.7 5.9E-05 43.4 5.9 140 87-259 1-162 (313)
144 PRK11199 tyrA bifunctional cho 82.1 4 8.7E-05 42.8 7.2 31 86-119 98-129 (374)
145 PF02670 DXP_reductoisom: 1-de 82.0 2.6 5.6E-05 38.2 5.0 116 89-207 1-120 (129)
146 cd05213 NAD_bind_Glutamyl_tRNA 82.0 3.4 7.3E-05 42.1 6.4 33 86-120 178-210 (311)
147 PRK07634 pyrroline-5-carboxyla 80.8 2.6 5.6E-05 40.6 4.9 36 86-121 4-40 (245)
148 TIGR01019 sucCoAalpha succinyl 80.4 4 8.7E-05 41.6 6.3 89 87-209 7-97 (286)
149 PRK08605 D-lactate dehydrogena 80.3 2.1 4.6E-05 44.1 4.4 32 86-119 146-177 (332)
150 PRK00257 erythronate-4-phospha 80.3 2.2 4.7E-05 45.2 4.5 31 86-119 116-146 (381)
151 TIGR01327 PGDH D-3-phosphoglyc 80.1 2.1 4.5E-05 46.9 4.5 32 86-120 138-169 (525)
152 PLN02214 cinnamoyl-CoA reducta 80.0 8.3 0.00018 39.3 8.5 31 87-120 11-42 (342)
153 PRK06522 2-dehydropantoate 2-r 79.9 9.4 0.0002 37.7 8.7 31 87-120 1-31 (304)
154 PRK09880 L-idonate 5-dehydroge 79.6 7.1 0.00015 39.5 7.9 89 88-202 172-261 (343)
155 PTZ00082 L-lactate dehydrogena 79.2 3.6 7.7E-05 42.3 5.6 23 87-109 7-29 (321)
156 PRK00045 hemA glutamyl-tRNA re 79.1 3.7 7.9E-05 43.7 5.8 32 87-120 183-214 (423)
157 PRK13581 D-3-phosphoglycerate 79.0 2.4 5.1E-05 46.5 4.4 32 86-120 140-171 (526)
158 PRK07417 arogenate dehydrogena 78.9 2.5 5.3E-05 42.1 4.2 31 87-120 1-31 (279)
159 PLN02256 arogenate dehydrogena 78.7 2.6 5.5E-05 43.1 4.3 33 86-121 36-68 (304)
160 PLN02712 arogenate dehydrogena 78.2 2.5 5.5E-05 47.8 4.5 34 85-121 368-401 (667)
161 PLN00106 malate dehydrogenase 77.8 12 0.00027 38.6 9.0 22 87-108 19-41 (323)
162 PRK13403 ketol-acid reductoiso 77.6 2.9 6.3E-05 43.5 4.4 32 87-121 17-48 (335)
163 cd01483 E1_enzyme_family Super 77.1 1.9 4E-05 38.4 2.5 22 88-109 1-22 (143)
164 PLN02712 arogenate dehydrogena 77.0 2.9 6.4E-05 47.2 4.5 33 86-121 52-84 (667)
165 COG0451 WcaG Nucleoside-diphos 76.5 12 0.00026 36.4 8.2 31 88-121 2-33 (314)
166 PRK00066 ldh L-lactate dehydro 76.3 11 0.00023 38.7 8.0 22 87-108 7-28 (315)
167 TIGR00243 Dxr 1-deoxy-D-xylulo 76.2 4.1 8.9E-05 43.3 5.1 112 87-208 2-124 (389)
168 COG3804 Uncharacterized conser 75.9 3.5 7.7E-05 42.3 4.3 35 85-121 1-35 (350)
169 COG0771 MurD UDP-N-acetylmuram 75.7 12 0.00025 40.7 8.4 89 86-202 7-95 (448)
170 PRK03369 murD UDP-N-acetylmura 75.2 11 0.00025 40.7 8.3 82 88-201 14-95 (488)
171 TIGR03366 HpnZ_proposed putati 75.1 14 0.0003 36.3 8.2 137 88-254 123-260 (280)
172 PLN02688 pyrroline-5-carboxyla 74.6 6 0.00013 38.6 5.6 35 87-121 1-36 (266)
173 TIGR02717 AcCoA-syn-alpha acet 74.5 9.6 0.00021 40.9 7.5 82 88-206 9-94 (447)
174 cd01336 MDH_cytoplasmic_cytoso 74.2 14 0.00029 38.2 8.2 23 86-108 2-25 (325)
175 PRK08507 prephenate dehydrogen 74.1 4.6 9.9E-05 40.0 4.6 33 87-120 1-33 (275)
176 COG0287 TyrA Prephenate dehydr 73.9 4.4 9.4E-05 41.1 4.4 34 85-119 2-35 (279)
177 KOG1203 Predicted dehydrogenas 73.7 22 0.00048 38.2 9.8 24 86-109 79-103 (411)
178 PLN02260 probable rhamnose bio 73.5 13 0.00027 41.6 8.4 34 86-120 6-40 (668)
179 cd00755 YgdL_like Family of ac 73.3 4.5 9.7E-05 39.9 4.2 23 86-108 11-33 (231)
180 PRK06476 pyrroline-5-carboxyla 72.7 5 0.00011 39.3 4.5 22 87-108 1-22 (258)
181 KOG1502 Flavonol reductase/cin 71.0 20 0.00044 37.3 8.6 80 85-186 5-88 (327)
182 PRK12491 pyrroline-5-carboxyla 71.0 6.1 0.00013 39.5 4.7 36 85-120 1-37 (272)
183 PRK01438 murD UDP-N-acetylmura 71.0 25 0.00054 37.6 9.6 91 88-208 18-108 (480)
184 PRK12464 1-deoxy-D-xylulose 5- 70.9 2.4 5.2E-05 44.9 1.8 108 91-208 1-117 (383)
185 PLN02662 cinnamyl-alcohol dehy 70.8 19 0.0004 35.6 8.1 29 88-119 6-35 (322)
186 KOG0069 Glyoxylate/hydroxypyru 70.7 3.8 8.2E-05 42.8 3.2 26 82-107 158-183 (336)
187 cd05293 LDH_1 A subgroup of L- 70.5 6.2 0.00013 40.5 4.7 22 87-108 4-25 (312)
188 PRK05086 malate dehydrogenase; 69.9 26 0.00056 35.9 9.0 21 87-107 1-22 (312)
189 PRK09599 6-phosphogluconate de 69.9 5.8 0.00012 40.0 4.3 31 87-120 1-31 (301)
190 cd08242 MDR_like Medium chain 69.7 27 0.00059 34.4 9.0 83 88-202 158-240 (319)
191 PF00670 AdoHcyase_NAD: S-aden 69.5 17 0.00036 34.3 6.9 22 88-109 25-46 (162)
192 COG1064 AdhP Zn-dependent alco 69.5 22 0.00048 37.3 8.5 92 88-209 169-261 (339)
193 cd05294 LDH-like_MDH_nadp A la 69.2 10 0.00022 38.7 5.9 32 87-119 1-33 (309)
194 PF02254 TrkA_N: TrkA-N domain 69.1 8.1 0.00018 32.6 4.5 29 89-120 1-29 (116)
195 PRK12490 6-phosphogluconate de 68.6 6.4 0.00014 39.6 4.3 31 87-120 1-31 (299)
196 PRK03659 glutathione-regulated 68.4 6.8 0.00015 43.6 4.8 39 86-129 400-438 (601)
197 cd05290 LDH_3 A subgroup of L- 68.4 6.7 0.00015 40.1 4.4 21 88-108 1-21 (307)
198 PTZ00075 Adenosylhomocysteinas 68.3 6.6 0.00014 42.9 4.5 31 86-119 254-284 (476)
199 cd08239 THR_DH_like L-threonin 68.2 11 0.00024 37.6 6.0 96 87-206 165-261 (339)
200 cd05291 HicDH_like L-2-hydroxy 67.9 8.5 0.00018 39.0 5.0 31 88-119 2-32 (306)
201 PRK09496 trkA potassium transp 67.6 6.6 0.00014 41.2 4.3 31 87-120 1-31 (453)
202 PRK15116 sulfur acceptor prote 67.6 4.4 9.6E-05 40.9 2.9 24 86-109 30-53 (268)
203 PRK03562 glutathione-regulated 66.9 7.6 0.00016 43.5 4.8 37 86-127 400-436 (621)
204 PLN02586 probable cinnamyl alc 66.7 23 0.00049 36.4 7.9 30 88-120 186-215 (360)
205 TIGR00872 gnd_rel 6-phosphoglu 66.5 7.4 0.00016 39.2 4.3 31 87-120 1-31 (298)
206 PRK07679 pyrroline-5-carboxyla 66.1 8.8 0.00019 38.1 4.7 34 87-120 4-38 (279)
207 PF03721 UDPG_MGDP_dh_N: UDP-g 66.0 8.3 0.00018 36.4 4.3 30 87-119 1-30 (185)
208 cd08298 CAD2 Cinnamyl alcohol 65.9 73 0.0016 31.4 11.2 84 88-204 170-253 (329)
209 PRK14619 NAD(P)H-dependent gly 65.8 8.4 0.00018 38.9 4.5 30 87-119 5-34 (308)
210 TIGR03201 dearomat_had 6-hydro 65.7 52 0.0011 33.3 10.2 29 88-119 169-197 (349)
211 TIGR01505 tartro_sem_red 2-hyd 65.1 7.4 0.00016 38.7 3.9 30 88-120 1-30 (291)
212 PF00208 ELFV_dehydrog: Glutam 64.9 8 0.00017 38.4 4.1 103 87-208 33-146 (244)
213 PRK05678 succinyl-CoA syntheta 64.8 18 0.00038 37.0 6.6 89 87-209 9-99 (291)
214 COG0334 GdhA Glutamate dehydro 64.5 37 0.00081 36.5 9.1 33 86-121 207-239 (411)
215 cd01338 MDH_choloroplast_like 64.3 12 0.00025 38.7 5.3 23 86-108 2-25 (322)
216 PRK06718 precorrin-2 dehydroge 64.0 59 0.0013 31.1 9.7 31 87-120 11-41 (202)
217 PTZ00325 malate dehydrogenase; 63.6 41 0.00089 34.8 9.1 80 176-263 76-176 (321)
218 KOG0068 D-3-phosphoglycerate d 63.3 9.1 0.0002 40.3 4.2 31 87-120 147-177 (406)
219 KOG4039 Serine/threonine kinas 63.0 42 0.0009 32.7 8.2 32 87-120 19-52 (238)
220 TIGR01087 murD UDP-N-acetylmur 62.9 39 0.00084 35.5 9.0 89 88-208 1-92 (433)
221 PLN02494 adenosylhomocysteinas 62.7 9.8 0.00021 41.6 4.5 31 87-120 255-285 (477)
222 PRK06928 pyrroline-5-carboxyla 62.5 11 0.00024 37.5 4.7 34 87-120 2-36 (277)
223 cd08281 liver_ADH_like1 Zinc-d 62.5 17 0.00038 37.1 6.2 95 88-206 194-289 (371)
224 PRK07502 cyclohexadienyl dehyd 62.5 11 0.00024 37.9 4.7 32 87-119 7-38 (307)
225 PLN02602 lactate dehydrogenase 62.4 14 0.0003 38.7 5.4 149 87-266 38-205 (350)
226 PLN02514 cinnamyl-alcohol dehy 62.0 78 0.0017 32.3 10.8 138 87-259 182-319 (357)
227 PRK10669 putative cation:proto 61.8 11 0.00024 41.3 4.8 34 84-120 415-448 (558)
228 PRK00094 gpsA NAD(P)H-dependen 61.7 11 0.00024 37.6 4.4 31 87-120 2-32 (325)
229 PRK09424 pntA NAD(P) transhydr 61.5 15 0.00032 40.5 5.6 31 86-119 165-195 (509)
230 COG2085 Predicted dinucleotide 61.4 14 0.0003 36.3 4.9 31 87-120 2-32 (211)
231 PRK00421 murC UDP-N-acetylmura 60.9 36 0.00078 36.3 8.4 83 87-201 8-91 (461)
232 PRK03803 murD UDP-N-acetylmura 60.7 48 0.001 35.1 9.3 106 88-225 8-119 (448)
233 PRK06249 2-dehydropantoate 2-r 60.6 12 0.00026 37.9 4.5 23 86-108 5-27 (313)
234 PRK05865 hypothetical protein; 59.8 27 0.00059 40.8 7.7 31 87-120 1-32 (854)
235 TIGR00936 ahcY adenosylhomocys 59.5 12 0.00026 40.1 4.4 30 87-119 196-225 (406)
236 PF02737 3HCDH_N: 3-hydroxyacy 59.2 14 0.00031 34.5 4.5 30 88-120 1-30 (180)
237 PRK07201 short chain dehydroge 59.2 59 0.0013 35.8 10.0 34 87-121 1-35 (657)
238 PRK14573 bifunctional D-alanyl 58.8 36 0.00077 39.3 8.4 82 88-201 6-88 (809)
239 TIGR03026 NDP-sugDHase nucleot 58.6 12 0.00025 39.5 4.2 31 87-120 1-31 (411)
240 PRK00141 murD UDP-N-acetylmura 57.2 54 0.0012 35.3 9.0 82 88-201 17-99 (473)
241 PRK05479 ketol-acid reductoiso 56.9 14 0.00029 38.6 4.2 31 87-120 18-48 (330)
242 PRK15059 tartronate semialdehy 56.9 14 0.0003 37.3 4.3 29 88-119 2-30 (292)
243 PRK07680 late competence prote 56.9 16 0.00035 36.1 4.7 22 87-108 1-22 (273)
244 PRK12475 thiamine/molybdopteri 56.6 8.2 0.00018 40.1 2.6 24 86-109 24-47 (338)
245 PRK08644 thiamine biosynthesis 56.5 5.2 0.00011 38.6 1.1 24 86-109 28-51 (212)
246 PRK02006 murD UDP-N-acetylmura 56.1 54 0.0012 35.4 8.9 29 88-119 9-37 (498)
247 COG0743 Dxr 1-deoxy-D-xylulose 55.8 18 0.0004 38.3 4.9 114 87-207 2-119 (385)
248 PRK04690 murD UDP-N-acetylmura 55.8 44 0.00095 36.0 8.1 90 87-207 9-98 (468)
249 PRK14106 murD UDP-N-acetylmura 55.4 38 0.00082 35.7 7.4 93 87-208 6-98 (450)
250 cd01487 E1_ThiF_like E1_ThiF_l 55.1 9.8 0.00021 35.5 2.6 22 88-109 1-22 (174)
251 PRK02472 murD UDP-N-acetylmura 55.0 54 0.0012 34.5 8.5 88 88-207 7-97 (447)
252 TIGR03451 mycoS_dep_FDH mycoth 54.9 60 0.0013 33.0 8.5 30 87-119 178-208 (358)
253 PRK06545 prephenate dehydrogen 54.9 16 0.00034 38.0 4.4 31 88-119 2-32 (359)
254 PF04321 RmlD_sub_bind: RmlD s 54.8 16 0.00034 36.5 4.2 31 87-120 1-32 (286)
255 PRK01710 murD UDP-N-acetylmura 54.7 65 0.0014 34.4 9.1 108 88-225 16-128 (458)
256 PLN02545 3-hydroxybutyryl-CoA 54.3 17 0.00038 36.2 4.5 30 88-120 6-35 (295)
257 PRK03806 murD UDP-N-acetylmura 54.2 91 0.002 32.9 10.0 105 88-225 8-116 (438)
258 cd00757 ThiF_MoeB_HesA_family 53.6 7.2 0.00016 37.8 1.5 24 86-109 21-44 (228)
259 PRK08818 prephenate dehydrogen 53.5 17 0.00038 38.3 4.4 31 86-118 4-35 (370)
260 PRK14618 NAD(P)H-dependent gly 53.4 18 0.00038 36.8 4.4 31 87-120 5-35 (328)
261 PLN02778 3,5-epimerase/4-reduc 53.4 20 0.00043 36.0 4.7 31 83-116 6-37 (298)
262 PTZ00431 pyrroline carboxylate 53.4 12 0.00026 37.0 3.1 22 87-108 4-25 (260)
263 COG1062 AdhC Zn-dependent alco 53.2 28 0.0006 36.7 5.7 97 87-206 187-284 (366)
264 cd08301 alcohol_DH_plants Plan 52.8 34 0.00074 34.8 6.4 31 87-120 189-220 (369)
265 PRK11064 wecC UDP-N-acetyl-D-m 52.7 18 0.00039 38.5 4.4 31 87-120 4-34 (415)
266 PRK15461 NADH-dependent gamma- 52.6 18 0.00039 36.4 4.2 31 87-120 2-32 (296)
267 PLN02572 UDP-sulfoquinovose sy 52.4 24 0.00053 37.6 5.4 34 83-119 44-78 (442)
268 COG0345 ProC Pyrroline-5-carbo 51.9 21 0.00046 36.1 4.6 34 87-120 2-36 (266)
269 TIGR00465 ilvC ketol-acid redu 51.9 19 0.00041 37.1 4.3 31 87-120 4-34 (314)
270 PRK06129 3-hydroxyacyl-CoA deh 51.8 19 0.00041 36.4 4.3 31 87-120 3-33 (308)
271 cd08235 iditol_2_DH_like L-idi 51.5 1.1E+02 0.0024 30.3 9.7 94 88-204 168-262 (343)
272 PRK06988 putative formyltransf 51.5 19 0.00042 36.8 4.3 31 85-118 1-31 (312)
273 cd01486 Apg7 Apg7 is an E1-lik 51.2 6.9 0.00015 40.4 1.0 22 88-109 1-22 (307)
274 cd08296 CAD_like Cinnamyl alco 51.1 48 0.001 33.1 7.0 93 88-206 166-258 (333)
275 PF01262 AlaDh_PNT_C: Alanine 51.1 24 0.00052 32.4 4.5 32 86-120 20-51 (168)
276 PRK05708 2-dehydropantoate 2-r 50.8 21 0.00045 36.2 4.4 24 85-108 1-24 (305)
277 PRK06444 prephenate dehydrogen 50.8 13 0.00029 35.7 2.9 21 87-107 1-22 (197)
278 PLN02178 cinnamyl-alcohol dehy 50.6 55 0.0012 34.0 7.5 29 88-119 181-209 (375)
279 PLN02740 Alcohol dehydrogenase 50.5 30 0.00065 35.6 5.6 29 88-119 201-230 (381)
280 PRK06035 3-hydroxyacyl-CoA deh 50.5 22 0.00047 35.5 4.4 30 88-120 5-34 (291)
281 PRK09260 3-hydroxybutyryl-CoA 50.3 21 0.00046 35.6 4.3 29 88-119 3-31 (288)
282 COG0702 Predicted nucleoside-d 49.1 22 0.00048 33.8 4.1 31 87-120 1-32 (275)
283 PLN02695 GDP-D-mannose-3',5'-e 48.9 27 0.00059 36.1 5.0 32 86-120 21-53 (370)
284 cd01484 E1-2_like Ubiquitin ac 48.9 14 0.00031 36.4 2.8 114 88-209 1-123 (234)
285 cd08294 leukotriene_B4_DH_like 48.6 68 0.0015 31.5 7.6 30 88-120 146-176 (329)
286 cd05283 CAD1 Cinnamyl alcohol 48.6 1E+02 0.0022 30.8 9.0 88 87-202 171-258 (337)
287 PRK05808 3-hydroxybutyryl-CoA 48.5 23 0.0005 35.1 4.3 29 88-119 5-33 (282)
288 cd08237 ribitol-5-phosphate_DH 48.2 45 0.00097 33.8 6.4 31 88-119 166-196 (341)
289 PRK07531 bifunctional 3-hydrox 48.1 23 0.0005 38.5 4.5 31 87-120 5-35 (495)
290 TIGR02441 fa_ox_alpha_mit fatt 48.0 15 0.00033 42.1 3.2 29 88-119 337-365 (737)
291 PRK08655 prephenate dehydrogen 47.2 24 0.00053 37.8 4.4 30 87-119 1-31 (437)
292 PRK11730 fadB multifunctional 47.1 23 0.00049 40.5 4.4 29 88-119 315-343 (715)
293 PLN02427 UDP-apiose/xylose syn 47.0 25 0.00055 36.1 4.4 32 87-120 15-47 (386)
294 PRK04663 murD UDP-N-acetylmura 46.6 1.3E+02 0.0029 31.8 9.9 83 88-201 9-93 (438)
295 PRK06130 3-hydroxybutyryl-CoA 46.6 27 0.00059 35.0 4.4 30 87-119 5-34 (311)
296 TIGR01470 cysG_Nterm siroheme 46.6 1.2E+02 0.0027 29.0 8.8 30 88-120 11-40 (205)
297 cd08277 liver_alcohol_DH_like 46.5 83 0.0018 32.1 8.0 30 87-119 186-216 (365)
298 PRK09496 trkA potassium transp 46.3 26 0.00057 36.8 4.5 32 86-120 231-262 (453)
299 PRK04308 murD UDP-N-acetylmura 46.3 1.2E+02 0.0026 32.1 9.4 92 87-208 6-97 (445)
300 cd08245 CAD Cinnamyl alcohol d 46.2 82 0.0018 31.1 7.7 31 87-120 164-194 (330)
301 PRK11154 fadJ multifunctional 46.2 84 0.0018 35.9 8.7 156 87-263 310-488 (708)
302 TIGR02818 adh_III_F_hyde S-(hy 46.1 71 0.0015 32.7 7.5 30 87-119 187-217 (368)
303 PLN02260 probable rhamnose bio 45.9 31 0.00068 38.5 5.2 41 84-127 378-420 (668)
304 PRK10309 galactitol-1-phosphat 45.9 85 0.0018 31.5 7.9 29 88-119 163-192 (347)
305 cd01339 LDH-like_MDH L-lactate 45.7 52 0.0011 33.1 6.3 28 89-118 1-28 (300)
306 PRK11908 NAD-dependent epimera 45.6 29 0.00062 35.1 4.5 32 87-120 2-34 (347)
307 PRK15057 UDP-glucose 6-dehydro 45.3 25 0.00054 37.2 4.1 39 87-131 1-39 (388)
308 PLN00141 Tic62-NAD(P)-related 45.3 39 0.00085 32.5 5.2 31 87-120 18-49 (251)
309 PRK12921 2-dehydropantoate 2-r 45.2 28 0.00061 34.4 4.3 30 87-119 1-30 (305)
310 TIGR01759 MalateDH-SF1 malate 45.0 34 0.00074 35.4 4.9 23 86-108 3-26 (323)
311 cd08254 hydroxyacyl_CoA_DH 6-h 44.9 1.2E+02 0.0027 29.6 8.8 95 88-206 168-262 (338)
312 cd05191 NAD_bind_amino_acid_DH 44.3 32 0.0007 28.0 3.8 22 87-108 24-45 (86)
313 TIGR02437 FadB fatty oxidation 44.0 26 0.00057 40.0 4.3 29 88-119 315-343 (714)
314 cd00704 MDH Malate dehydrogena 43.7 35 0.00076 35.2 4.8 22 87-108 1-23 (323)
315 PLN02166 dTDP-glucose 4,6-dehy 43.5 33 0.00071 36.7 4.7 32 86-120 120-152 (436)
316 cd08255 2-desacetyl-2-hydroxye 43.4 1.2E+02 0.0025 29.2 8.1 29 88-119 100-129 (277)
317 PRK09987 dTDP-4-dehydrorhamnos 43.4 42 0.00091 33.4 5.2 29 87-119 1-30 (299)
318 TIGR02355 moeB molybdopterin s 43.4 10 0.00023 37.3 0.9 23 87-109 25-47 (240)
319 PRK05442 malate dehydrogenase; 43.3 32 0.00068 35.6 4.4 23 86-108 4-27 (326)
320 cd08231 MDR_TM0436_like Hypoth 43.2 1.1E+02 0.0025 30.7 8.4 29 88-119 180-209 (361)
321 PLN02240 UDP-glucose 4-epimera 43.2 36 0.00077 34.1 4.7 33 85-120 4-37 (352)
322 TIGR00518 alaDH alanine dehydr 42.9 32 0.00069 36.1 4.4 31 87-120 168-198 (370)
323 PRK07877 hypothetical protein; 42.8 11 0.00023 43.3 0.9 117 86-209 107-228 (722)
324 TIGR00507 aroE shikimate 5-deh 41.6 1.3E+02 0.0027 29.8 8.3 31 87-120 118-148 (270)
325 PTZ00142 6-phosphogluconate de 41.5 29 0.00062 37.8 3.9 31 87-120 2-32 (470)
326 cd08269 Zn_ADH9 Alcohol dehydr 41.4 32 0.00069 33.4 4.0 30 88-120 132-162 (312)
327 cd05292 LDH_2 A subgroup of L- 41.3 37 0.00079 34.6 4.5 22 87-108 1-22 (308)
328 TIGR01035 hemA glutamyl-tRNA r 41.2 35 0.00076 36.3 4.5 33 87-121 181-213 (417)
329 PRK07530 3-hydroxybutyryl-CoA 41.0 37 0.00081 33.8 4.4 30 87-119 5-34 (292)
330 cd01065 NAD_bind_Shikimate_DH 41.0 46 0.00099 29.3 4.6 31 87-119 20-50 (155)
331 PRK02318 mannitol-1-phosphate 40.5 31 0.00066 36.2 3.9 31 87-119 1-31 (381)
332 cd08284 FDH_like_2 Glutathione 40.4 1E+02 0.0022 30.6 7.5 28 88-118 170-198 (344)
333 PF01073 3Beta_HSD: 3-beta hyd 40.4 1.1E+02 0.0023 30.6 7.6 19 91-109 2-21 (280)
334 cd08233 butanediol_DH_like (2R 40.1 50 0.0011 33.2 5.2 29 88-119 175-204 (351)
335 PRK02705 murD UDP-N-acetylmura 40.0 57 0.0012 34.5 5.8 90 88-208 2-98 (459)
336 PRK10675 UDP-galactose-4-epime 40.0 39 0.00084 33.7 4.4 31 87-120 1-32 (338)
337 PF01488 Shikimate_DH: Shikima 40.0 41 0.00088 29.9 4.1 33 87-121 13-45 (135)
338 COG0373 HemA Glutamyl-tRNA red 39.9 36 0.00079 36.6 4.3 33 87-121 179-211 (414)
339 COG5322 Predicted dehydrogenas 39.7 85 0.0018 32.5 6.6 61 177-242 231-291 (351)
340 PLN02827 Alcohol dehydrogenase 39.7 1.2E+02 0.0027 31.2 8.2 29 88-119 196-225 (378)
341 cd08246 crotonyl_coA_red croto 39.6 2.9E+02 0.0064 28.3 10.9 29 88-119 196-225 (393)
342 cd08262 Zn_ADH8 Alcohol dehydr 39.6 1.6E+02 0.0035 29.2 8.7 21 88-108 164-184 (341)
343 PRK00683 murD UDP-N-acetylmura 39.5 36 0.00078 35.9 4.2 85 88-208 5-89 (418)
344 PLN02206 UDP-glucuronate decar 39.3 49 0.0011 35.5 5.2 32 86-120 119-151 (442)
345 cd08300 alcohol_DH_class_III c 39.3 1.3E+02 0.0028 30.8 8.1 30 87-119 188-218 (368)
346 cd08234 threonine_DH_like L-th 39.2 78 0.0017 31.2 6.4 29 88-119 162-191 (334)
347 COG1179 Dinucleotide-utilizing 39.0 32 0.00068 34.8 3.4 122 88-218 32-163 (263)
348 cd08236 sugar_DH NAD(P)-depend 38.7 86 0.0019 31.2 6.6 30 88-120 162-192 (343)
349 KOG0455 Homoserine dehydrogena 38.6 24 0.00051 36.0 2.5 36 86-121 3-44 (364)
350 PF12338 RbcS: Ribulose-1,5-bi 38.6 16 0.00035 27.4 1.0 21 35-55 22-42 (45)
351 cd08263 Zn_ADH10 Alcohol dehyd 38.3 1.7E+02 0.0036 29.7 8.8 29 88-119 190-219 (367)
352 PRK07066 3-hydroxybutyryl-CoA 38.2 43 0.00093 34.6 4.4 29 88-119 9-37 (321)
353 TIGR01757 Malate-DH_plant mala 37.6 52 0.0011 35.1 5.0 23 86-108 44-67 (387)
354 PRK08293 3-hydroxybutyryl-CoA 37.3 47 0.001 33.1 4.4 30 87-119 4-33 (287)
355 PLN03154 putative allyl alcoho 37.1 1.5E+02 0.0032 30.2 8.2 29 88-119 161-190 (348)
356 cd05188 MDR Medium chain reduc 37.0 1.3E+02 0.0029 28.0 7.3 31 87-120 136-166 (271)
357 cd08260 Zn_ADH6 Alcohol dehydr 36.9 1.1E+02 0.0025 30.4 7.2 30 88-120 168-197 (345)
358 PRK10083 putative oxidoreducta 36.7 1.1E+02 0.0023 30.5 6.9 20 88-107 163-182 (339)
359 cd05280 MDR_yhdh_yhfp Yhdh and 36.6 1.4E+02 0.003 29.2 7.6 29 88-119 149-178 (325)
360 PRK05597 molybdopterin biosynt 36.6 19 0.00042 37.5 1.6 24 86-109 28-51 (355)
361 PRK08219 short chain dehydroge 36.5 46 0.001 30.7 4.0 30 87-120 4-34 (227)
362 PLN02702 L-idonate 5-dehydroge 36.3 74 0.0016 32.3 5.8 21 88-108 184-204 (364)
363 PRK15182 Vi polysaccharide bio 36.2 39 0.00086 36.1 3.9 30 87-120 7-36 (425)
364 PRK14192 bifunctional 5,10-met 36.2 1.2E+02 0.0026 30.9 7.2 22 87-108 160-182 (283)
365 COG1023 Gnd Predicted 6-phosph 36.0 36 0.00078 34.6 3.3 41 87-132 1-41 (300)
366 cd08278 benzyl_alcohol_DH Benz 35.7 67 0.0014 32.8 5.4 29 88-119 189-218 (365)
367 cd08289 MDR_yhfp_like Yhfp put 35.3 1E+02 0.0022 30.2 6.4 30 88-120 149-179 (326)
368 smart00833 CobW_C Cobalamin sy 35.3 65 0.0014 25.9 4.3 49 331-380 3-55 (92)
369 PF00070 Pyr_redox: Pyridine n 35.3 77 0.0017 25.1 4.6 29 88-119 1-29 (80)
370 cd08232 idonate-5-DH L-idonate 35.1 2.2E+02 0.0048 28.2 8.9 29 88-119 168-197 (339)
371 TIGR01181 dTDP_gluc_dehyt dTDP 35.1 48 0.001 32.1 4.1 31 88-119 1-32 (317)
372 KOG0024 Sorbitol dehydrogenase 34.6 47 0.001 34.9 3.9 26 176-201 242-267 (354)
373 PLN02896 cinnamyl-alcohol dehy 34.6 61 0.0013 32.8 4.9 32 86-120 10-42 (353)
374 PRK14851 hypothetical protein; 34.6 28 0.0006 39.7 2.6 98 86-187 43-144 (679)
375 cd08295 double_bond_reductase_ 34.6 1.7E+02 0.0037 29.2 8.1 29 88-119 154-183 (338)
376 PRK09291 short chain dehydroge 34.6 59 0.0013 30.8 4.5 31 87-120 3-34 (257)
377 TIGR02819 fdhA_non_GSH formald 34.2 2E+02 0.0042 30.2 8.7 31 88-121 188-218 (393)
378 TIGR02440 FadJ fatty oxidation 34.2 99 0.0022 35.3 6.9 29 88-118 306-334 (699)
379 PRK15181 Vi polysaccharide bio 34.1 53 0.0011 33.4 4.3 32 86-120 15-47 (348)
380 TIGR00873 gnd 6-phosphoglucona 33.9 41 0.00089 36.6 3.6 30 88-120 1-30 (467)
381 PF01370 Epimerase: NAD depend 33.5 82 0.0018 29.1 5.2 30 89-121 1-31 (236)
382 cd00650 LDH_MDH_like NAD-depen 33.5 1.3E+02 0.0028 29.6 6.8 20 89-108 1-21 (263)
383 PLN02353 probable UDP-glucose 33.5 57 0.0012 35.6 4.6 32 87-119 2-33 (473)
384 PF00899 ThiF: ThiF family; I 33.3 43 0.00093 29.4 3.1 41 87-129 3-44 (135)
385 cd08238 sorbose_phosphate_red 33.3 2E+02 0.0044 29.9 8.6 34 175-208 256-289 (410)
386 cd08270 MDR4 Medium chain dehy 33.2 2.9E+02 0.0062 26.7 9.2 87 87-206 134-221 (305)
387 TIGR01214 rmlD dTDP-4-dehydror 33.1 56 0.0012 31.6 4.2 30 88-120 1-31 (287)
388 TIGR03466 HpnA hopanoid-associ 33.0 55 0.0012 32.1 4.1 30 88-120 2-32 (328)
389 KOG3923 D-aspartate oxidase [A 31.6 56 0.0012 34.1 3.9 37 85-121 2-42 (342)
390 PF00107 ADH_zinc_N: Zinc-bind 31.3 17 0.00037 30.9 0.2 36 175-210 57-92 (130)
391 cd08292 ETR_like_2 2-enoyl thi 31.2 1.1E+02 0.0025 29.7 6.0 32 87-121 141-173 (324)
392 PRK07326 short chain dehydroge 31.1 70 0.0015 29.8 4.3 31 87-120 7-38 (237)
393 PRK06046 alanine dehydrogenase 31.1 69 0.0015 32.9 4.6 33 87-121 130-162 (326)
394 cd00300 LDH_like L-lactate deh 31.0 1.4E+02 0.0031 30.2 6.8 20 89-108 1-20 (300)
395 PF02192 PI3K_p85B: PI3-kinase 30.9 98 0.0021 25.7 4.6 39 332-371 2-41 (78)
396 PRK08017 oxidoreductase; Provi 30.9 74 0.0016 30.1 4.5 30 88-120 4-34 (256)
397 cd05288 PGDH Prostaglandin deh 30.6 1.9E+02 0.004 28.4 7.4 29 88-119 148-177 (329)
398 TIGR02825 B4_12hDH leukotriene 30.6 1.7E+02 0.0037 29.0 7.2 30 88-120 141-171 (325)
399 PLN00112 malate dehydrogenase 30.5 23 0.0005 38.4 1.0 23 86-108 100-123 (444)
400 cd08259 Zn_ADH5 Alcohol dehydr 30.5 1.5E+02 0.0032 28.9 6.7 29 88-119 165-194 (332)
401 PRK12771 putative glutamate sy 30.1 18 0.0004 39.7 0.2 30 87-119 138-167 (564)
402 PRK06019 phosphoribosylaminoim 29.6 74 0.0016 33.1 4.6 31 87-120 3-33 (372)
403 cd05279 Zn_ADH1 Liver alcohol 29.5 1.6E+02 0.0035 30.0 7.0 21 88-108 186-206 (365)
404 PRK06719 precorrin-2 dehydroge 29.4 87 0.0019 28.8 4.5 30 87-119 14-43 (157)
405 PLN02350 phosphogluconate dehy 28.7 53 0.0012 36.1 3.5 130 87-229 7-157 (493)
406 PRK14620 NAD(P)H-dependent gly 28.7 78 0.0017 32.0 4.5 22 87-108 1-22 (326)
407 cd08261 Zn_ADH7 Alcohol dehydr 28.7 3.5E+02 0.0076 26.8 9.1 30 88-120 162-191 (337)
408 cd08285 NADP_ADH NADP(H)-depen 28.5 2.6E+02 0.0056 28.0 8.2 22 87-108 168-189 (351)
409 cd08287 FDH_like_ADH3 formalde 28.4 1E+02 0.0022 30.7 5.2 30 88-120 171-201 (345)
410 COG0621 MiaB 2-methylthioadeni 28.0 66 0.0014 34.9 4.0 68 185-272 168-241 (437)
411 TIGR01772 MDH_euk_gproteo mala 28.0 70 0.0015 33.0 4.0 21 88-108 1-22 (312)
412 PRK07023 short chain dehydroge 27.8 82 0.0018 29.7 4.2 30 87-119 2-32 (243)
413 PRK10538 malonic semialdehyde 27.7 87 0.0019 29.7 4.4 31 87-120 1-32 (248)
414 PLN00198 anthocyanidin reducta 27.6 83 0.0018 31.5 4.5 30 86-118 9-39 (338)
415 cd08290 ETR 2-enoyl thioester 27.6 1.2E+02 0.0026 30.1 5.5 31 88-121 149-180 (341)
416 cd08258 Zn_ADH4 Alcohol dehydr 27.6 2.2E+02 0.0047 28.2 7.4 138 88-254 167-305 (306)
417 TIGR00715 precor6x_red precorr 27.5 65 0.0014 32.3 3.6 28 87-118 1-29 (256)
418 KOG2250 Glutamate/leucine/phen 27.3 2.3E+02 0.005 31.4 7.8 103 86-206 251-363 (514)
419 PRK05396 tdh L-threonine 3-deh 27.1 1.8E+02 0.0039 29.0 6.7 29 87-118 165-194 (341)
420 PRK12320 hypothetical protein; 27.0 77 0.0017 36.4 4.5 31 87-120 1-32 (699)
421 TIGR01082 murC UDP-N-acetylmur 26.9 2.8E+02 0.0061 29.4 8.5 82 88-201 1-83 (448)
422 TIGR01763 MalateDH_bact malate 26.8 86 0.0019 32.0 4.4 144 87-261 2-164 (305)
423 PRK03815 murD UDP-N-acetylmura 26.5 78 0.0017 33.5 4.2 28 87-118 1-28 (401)
424 KOG2380 Prephenate dehydrogena 26.4 53 0.0012 34.9 2.8 24 86-109 52-75 (480)
425 PRK07411 hypothetical protein; 26.3 34 0.00073 36.2 1.4 23 86-108 38-60 (390)
426 PF02558 ApbA: Ketopantoate re 26.2 1.1E+02 0.0023 27.0 4.4 29 89-120 1-29 (151)
427 COG1893 ApbA Ketopantoate redu 26.1 81 0.0018 32.3 4.1 23 87-109 1-23 (307)
428 cd01337 MDH_glyoxysomal_mitoch 25.7 65 0.0014 33.2 3.3 22 87-108 1-23 (310)
429 PRK14806 bifunctional cyclohex 25.7 84 0.0018 35.6 4.5 33 87-120 4-36 (735)
430 cd08265 Zn_ADH3 Alcohol dehydr 25.3 3.6E+02 0.0078 27.7 8.7 29 88-119 206-235 (384)
431 PRK00258 aroE shikimate 5-dehy 25.1 1E+02 0.0022 30.7 4.5 33 87-121 124-156 (278)
432 PRK08223 hypothetical protein; 25.0 39 0.00084 34.6 1.5 23 86-108 27-49 (287)
433 PRK05653 fabG 3-ketoacyl-(acyl 25.0 1.1E+02 0.0024 28.3 4.5 31 87-120 6-37 (246)
434 TIGR01751 crot-CoA-red crotony 24.9 3.5E+02 0.0076 27.9 8.6 29 88-119 192-221 (398)
435 cd08293 PTGR2 Prostaglandin re 24.9 3E+02 0.0065 27.3 7.9 30 88-120 157-188 (345)
436 PRK12745 3-ketoacyl-(acyl-carr 24.9 1.1E+02 0.0024 28.9 4.5 33 85-120 1-34 (256)
437 PRK04965 NADH:flavorubredoxin 24.7 92 0.002 32.0 4.2 35 85-120 1-35 (377)
438 cd08240 6_hydroxyhexanoate_dh_ 24.7 1.5E+02 0.0033 29.6 5.7 21 88-108 178-198 (350)
439 cd05285 sorbitol_DH Sorbitol d 24.4 2.9E+02 0.0063 27.6 7.7 30 87-119 164-194 (343)
440 PRK07236 hypothetical protein; 24.3 1.1E+02 0.0023 31.6 4.6 34 84-120 4-37 (386)
441 KOG0023 Alcohol dehydrogenase, 24.2 64 0.0014 34.0 2.9 33 86-121 182-214 (360)
442 PRK10537 voltage-gated potassi 24.1 98 0.0021 33.0 4.3 30 87-119 241-270 (393)
443 PF07683 CobW_C: Cobalamin syn 24.0 95 0.0021 25.2 3.4 50 330-380 2-54 (94)
444 COG5495 Uncharacterized conser 23.9 60 0.0013 32.8 2.5 30 86-119 10-40 (289)
445 PRK10217 dTDP-glucose 4,6-dehy 23.8 95 0.0021 31.2 4.1 23 87-109 2-25 (355)
446 PRK10084 dTDP-glucose 4,6 dehy 23.8 1E+02 0.0022 31.0 4.3 22 87-108 1-23 (352)
447 TIGR02279 PaaC-3OHAcCoADH 3-hy 23.8 99 0.0021 34.0 4.4 30 88-120 7-36 (503)
448 PRK06924 short chain dehydroge 23.7 1.2E+02 0.0025 28.7 4.4 30 88-120 3-33 (251)
449 PRK08268 3-hydroxy-acyl-CoA de 23.7 1E+02 0.0022 33.9 4.4 30 88-120 9-38 (507)
450 PRK05225 ketol-acid reductoiso 23.6 54 0.0012 36.0 2.3 13 87-99 37-49 (487)
451 PRK08125 bifunctional UDP-gluc 23.6 98 0.0021 34.8 4.4 32 87-120 316-348 (660)
452 PRK10754 quinone oxidoreductas 23.6 1.3E+02 0.0029 29.5 5.0 30 88-120 143-173 (327)
453 PRK12827 short chain dehydroge 23.5 1.2E+02 0.0026 28.3 4.4 30 87-119 7-37 (249)
454 PLN00203 glutamyl-tRNA reducta 23.5 89 0.0019 34.6 4.0 33 87-121 267-299 (519)
455 PRK06947 glucose-1-dehydrogena 23.4 1.2E+02 0.0025 28.6 4.3 31 85-118 1-32 (248)
456 PLN02583 cinnamoyl-CoA reducta 23.2 1.2E+02 0.0025 30.2 4.5 30 88-120 8-38 (297)
457 cd08248 RTN4I1 Human Reticulon 23.2 2.6E+02 0.0057 27.7 7.0 31 87-120 164-195 (350)
458 cd05281 TDH Threonine dehydrog 23.1 1.3E+02 0.0029 30.0 4.9 28 88-118 166-194 (341)
459 TIGR03855 NAD_NadX aspartate d 22.8 72 0.0016 31.4 2.9 30 176-206 37-66 (229)
460 PRK07578 short chain dehydroge 22.7 1.6E+02 0.0034 27.0 4.9 28 88-119 2-30 (199)
461 PRK08618 ornithine cyclodeamin 22.7 1.4E+02 0.003 30.6 5.0 33 87-121 128-160 (325)
462 PRK12826 3-ketoacyl-(acyl-carr 22.6 1.2E+02 0.0025 28.4 4.2 31 87-120 7-38 (251)
463 PRK08267 short chain dehydroge 22.5 1.3E+02 0.0027 28.7 4.5 29 88-119 3-32 (260)
464 TIGR01179 galE UDP-glucose-4-e 22.4 1.1E+02 0.0024 29.7 4.2 29 88-119 1-30 (328)
465 PRK15076 alpha-galactosidase; 22.3 68 0.0015 34.5 2.8 12 87-98 2-13 (431)
466 KOG1399 Flavin-containing mono 22.3 85 0.0018 34.1 3.5 25 84-108 4-28 (448)
467 TIGR01777 yfcH conserved hypot 22.2 93 0.002 29.9 3.5 29 89-120 1-30 (292)
468 TIGR03570 NeuD_NnaD sugar O-ac 22.1 1.3E+02 0.0028 27.3 4.3 30 88-120 1-30 (201)
469 COG3731 SrlB Phosphotransferas 21.9 1.4E+02 0.0029 27.1 4.0 79 96-183 11-90 (123)
470 COG0240 GpsA Glycerol-3-phosph 21.6 1.1E+02 0.0023 32.2 3.9 30 87-117 2-31 (329)
471 TIGR01472 gmd GDP-mannose 4,6- 21.6 1.2E+02 0.0026 30.5 4.3 30 88-120 2-32 (343)
472 PF07991 IlvN: Acetohydroxy ac 21.4 1.3E+02 0.0027 28.6 4.0 31 88-121 6-36 (165)
473 PRK05884 short chain dehydroge 21.4 1.3E+02 0.0028 28.4 4.3 29 88-119 2-31 (223)
474 cd08252 AL_MDR Arginate lyase 21.3 2.6E+02 0.0057 27.4 6.6 31 88-120 152-183 (336)
475 cd05284 arabinose_DH_like D-ar 21.2 2.1E+02 0.0046 28.3 5.9 31 88-120 170-200 (340)
476 cd08286 FDH_like_ADH2 formalde 21.2 4.7E+02 0.01 25.9 8.4 30 88-119 169-198 (345)
477 cd01078 NAD_bind_H4MPT_DH NADP 21.1 1.5E+02 0.0033 27.5 4.5 31 87-120 29-60 (194)
478 PRK14852 hypothetical protein; 21.1 80 0.0017 37.7 3.2 23 86-108 332-354 (989)
479 cd01080 NAD_bind_m-THF_DH_Cycl 20.7 2E+02 0.0044 26.9 5.3 32 87-121 45-77 (168)
480 PRK07231 fabG 3-ketoacyl-(acyl 20.6 1.5E+02 0.0031 27.8 4.4 30 88-120 7-37 (251)
481 PRK05586 biotin carboxylase; V 20.6 1.2E+02 0.0027 32.2 4.3 30 87-119 3-32 (447)
482 cd08244 MDR_enoyl_red Possible 20.5 5.5E+02 0.012 24.9 8.6 30 88-120 145-175 (324)
483 PRK08163 salicylate hydroxylas 20.2 1.3E+02 0.0029 30.6 4.4 32 85-119 3-34 (396)
484 PRK09009 C factor cell-cell si 20.2 1.6E+02 0.0034 27.6 4.5 31 87-118 1-32 (235)
485 PF01232 Mannitol_dh: Mannitol 20.1 1.2E+02 0.0025 27.6 3.5 48 87-135 1-51 (151)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=7.6e-138 Score=1070.32 Aligned_cols=441 Identities=90% Similarity=1.350 Sum_probs=417.4
Q ss_pred ccCCCCCCCCCcccccCCCCcCCCCCcccccccccccccccccccCcccccccccccchhhhhhccccccccCCCCcccc
Q 012940 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (453)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (453)
+|||||++|||+++|++|+++ .+|.+|++|+|||++++++|++..++.+|++.++.|+.++ ..+..+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPK-VAGSTPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhh-hccccccccc
Confidence 699999999999999999886 3677899999999999999999989999999999999987 5557889999
Q ss_pred ccceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 83 ~~m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
++|++||||||||||||.++|+++++.++++|||+|||+.++++++|||||||+||+|+++++..+++.|.|+|++|.++
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 99999999999999999999998876335699999999999999999999999999999999854678999999999999
Q ss_pred eCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcch
Q 012940 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (453)
Q Consensus 163 ~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTT 242 (453)
++++|.++||+++|+||||||||.|++++++++|+++|||||+||+|++++++||||||||++.|++..++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999987678999999999999864378999999999
Q ss_pred hhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEe
Q 012940 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322 (453)
Q Consensus 243 n~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRV 322 (453)
|||+|++|+||++|||++++|||||+||++|+++|++|+||||+|++++||||++||++|++++|||+|+|||+|+++||
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeEEEEEEEEcc-CCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEE
Q 012940 323 PTPNVSVVDLVVNVEK-KGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAW 401 (453)
Q Consensus 323 Pv~~gs~vdltv~lek-~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~W 401 (453)
||++||++||+++++| + +++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++|++|+||++|
T Consensus 312 Pt~nvS~vDLt~~l~k~~-~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aW 390 (442)
T PLN02237 312 PTPNVSVVDLVVNVEKKG-ITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAW 390 (442)
T ss_pred ccCCceEEEEEEEeCCCC-CCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEE
Confidence 9999999999999998 7 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchhhhHHHHHHHHHhcCCCCCCCCCCChhhhhhccCCCCcccccccC
Q 012940 402 YDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYEA 453 (453)
Q Consensus 402 YDNE~GYs~r~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (453)
||||||||+||+||+.||+++|......++.||++.||.+||+++|||+|++
T Consensus 391 YDNEwGys~R~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
T PLN02237 391 YDNEWGYSQRVVDLAHLVAAKWPGGAAAGSGDPLEDFCKTNPADEECKVYDA 442 (442)
T ss_pred eCCchhHHHHHHHHHHHHHHhhccccccccccchhhhhhcCccccccccccC
Confidence 9999999999999999999987533445566799999999999999999974
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.1e-120 Score=931.73 Aligned_cols=384 Identities=77% Similarity=1.177 Sum_probs=364.8
Q ss_pred cccccccccccccccCcccccccccccchhhhhhccccccccCCCCccccccceeeEEEEcCChhHHHHHHHHHhCCCCC
Q 012940 33 KRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSP 112 (453)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaInGfGrIGR~vlr~l~~r~~~~ 112 (453)
...+|++|+|||++++.+|++..++++| ++.|+.++ ..+....+..++|++||||||||||||.++|+|++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~ 86 (395)
T PLN03096 11 GSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSP 86 (395)
T ss_pred ccCcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCC
Confidence 3459999999999999999888777777 77777766 4446788889999999999999999999999999887678
Q ss_pred ceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCCCCCCccccCccEEEcCCCCCCChhh
Q 012940 113 LDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPG 192 (453)
Q Consensus 113 ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~ 192 (453)
++|++|||+.++++++|||+|||+||+|+++++..+++.|.|+|++|.+++++||+++||+++|+||||||||.|.++++
T Consensus 87 ~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~ 166 (395)
T PLN03096 87 LDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREG 166 (395)
T ss_pred eEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHH
Confidence 99999999999999999999999999999999754678999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccc
Q 012940 193 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGD 272 (453)
Q Consensus 193 a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~ 272 (453)
+++|+++|||||+||+|.++ ++||||||||++.|++. ++||||||||||||+|++|+|||+|||+++.|||||+||++
T Consensus 167 a~~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~ 244 (395)
T PLN03096 167 AGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD 244 (395)
T ss_pred HHHHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc
Confidence 99999999999999999665 78999999999999876 78999999999999999999999999999999999999999
Q ss_pred hhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHH
Q 012940 273 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRK 352 (453)
Q Consensus 273 Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~ 352 (453)
|+++|++|+|+||+|++++||||++||++|++++|||+|+|||+++|+||||++||++||+++++++ +++||||++|++
T Consensus 245 Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~-~t~eev~~al~~ 323 (395)
T PLN03096 245 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKK-TFAEEVNAAFRD 323 (395)
T ss_pred cccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCC-CCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred cccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecCCCchhhhHHHHHHHHHhcC
Q 012940 353 AAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423 (453)
Q Consensus 353 aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE~GYs~r~vdl~~~~~~~~ 423 (453)
+++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++|||||||||+||+||+.+|+++|
T Consensus 324 aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~ 394 (395)
T PLN03096 324 AAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKW 394 (395)
T ss_pred hhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-118 Score=907.92 Aligned_cols=339 Identities=47% Similarity=0.772 Sum_probs=321.2
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEcC-CCChhhhhhhhccccceeecCceEEEe-------cCCeEE
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIV-------DNETIS 153 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~--~~~ieiVaInd-~~~~~~~a~LlkyDS~~G~f~~~v~~~-------~~~~l~ 153 (453)
.|++||||||||||||.++|++.++. .++++|||||| .+++++++|||||||+||+|+++++.. +++.|.
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 36789999999999999999988742 24699999999 589999999999999999999999852 578999
Q ss_pred ECCeEEEEE-eCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCC
Q 012940 154 VDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA 232 (453)
Q Consensus 154 v~Gk~I~v~-~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~ 232 (453)
+||++|.++ +++||+++||+++|+||||||||.|.+++.+++|+++||||||||||+++ +.||||+|||++.|++..+
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccC
Confidence 999999986 99999999999999999999999999999999999999999999999876 3589999999999987337
Q ss_pred eEEecCCcchhhhhhHHHHH-hhhcCeeEEEEEeeeccccchhhhccc-cccchhhhhhhhccccCCCchhHHHHhhccc
Q 012940 233 NIVSNASCTTNCLAPFVKVM-DEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQ 310 (453)
Q Consensus 233 ~IVSnaSCTTn~Lapvlk~L-~d~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPe 310 (453)
+||||+|||||||||++|+| ||+|||++|+|||+|+||++|+++|++ |+||||+|++++||||++||++|++++|||+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 89999999999999999999 799999999999999999999999999 5999999999999999999999999999999
Q ss_pred cCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCce
Q 012940 311 LKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMV 390 (453)
Q Consensus 311 L~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v 390 (453)
|+|||+|+++||||++||++||+++++|+ +|+||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~-~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v 318 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRATRD-TSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQ 318 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEeCCC-CCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeE
Confidence 99999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ec----CCeEEEEEEecCCCchhhhHHHHHHHHHhcCC
Q 012940 391 MG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATKWP 424 (453)
Q Consensus 391 ~~----~~~vKl~~WYDNE~GYs~r~vdl~~~~~~~~~ 424 (453)
++ ++++||++||||||||||||+||+.||.+.+.
T Consensus 319 ~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~~ 356 (361)
T PTZ00434 319 NNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDA 356 (361)
T ss_pred eccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhccc
Confidence 96 48999999999999999999999999987655
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-115 Score=881.27 Aligned_cols=334 Identities=71% Similarity=1.143 Sum_probs=322.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+||||||||||||.++|++.++++++++||||||+.++++++|||+|||+||+|+++++. +++.|.|||++|.++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence 699999999999999999887633469999999999999999999999999999999996 7899999999999999999
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhh
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~La 246 (453)
|+++||+++|+|+||||||.|++++++++|+++|||||++|+|++++|+||||||||++.|++.+++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998887789999999999998633789999999999999
Q ss_pred hHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeeecc
Q 012940 247 PFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326 (453)
Q Consensus 247 pvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv~~ 326 (453)
|++|+||++|||+++.|||||+||++|+++|++|+||||+|++++||||++||++|++++|||+|+|||+|+|+||||++
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~ 240 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecCCC
Q 012940 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEW 406 (453)
Q Consensus 327 gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE~ 406 (453)
+|++||+++++|+ +|+||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 241 vs~~dl~v~l~k~-~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~ 319 (337)
T PRK07403 241 VSVVDLVVQVEKR-TITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEW 319 (337)
T ss_pred cEEEEEEEEECCC-CCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCch
Confidence 9999999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhc
Q 012940 407 GYSQRVVDLAHLVATK 422 (453)
Q Consensus 407 GYs~r~vdl~~~~~~~ 422 (453)
|||+||+||+.+|+++
T Consensus 320 Gys~r~~dl~~~~~~~ 335 (337)
T PRK07403 320 GYSQRVVDLAELVARK 335 (337)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999764
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.7e-114 Score=872.67 Aligned_cols=330 Identities=48% Similarity=0.801 Sum_probs=318.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
|++||||||||||||.++|+++++ ++++||||||++++++++|||||||+||+|+++++. +++.|.|+|++|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence 568999999999999999998875 469999999999999999999999999999999997 68899999999999999
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhh
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~ 244 (453)
++|+++||+++|+|+||||||.|+++++|++|+++|||||++|+|.++ ++|+||||||++.|+. ++|||||||||||
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~ 154 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNC 154 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence 999999999999999999999999999999999999999999999543 6899999999999964 6899999999999
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccc-cccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEee
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVP 323 (453)
|+|++|+||++|||+++.|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+||++++|+|||
T Consensus 155 Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVP 234 (331)
T PRK15425 155 LAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVP 234 (331)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEec
Confidence 99999999999999999999999999999999997 48999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEec
Q 012940 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYD 403 (453)
Q Consensus 324 v~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYD 403 (453)
|++||++||+++++++ +|+|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++||++|||
T Consensus 235 v~~gs~~dltv~l~~~-~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyD 313 (331)
T PRK15425 235 TPNVSVVDLTVRLEKA-ATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYD 313 (331)
T ss_pred ccCeEEEEEEEEECCC-CCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEec
Confidence 9999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHHh
Q 012940 404 NEWGYSQRVVDLAHLVAT 421 (453)
Q Consensus 404 NE~GYs~r~vdl~~~~~~ 421 (453)
|||||||||+||+.||++
T Consensus 314 NE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 314 NETGYSNKVLDLIAHISK 331 (331)
T ss_pred CchhHHHHHHHHHHHHhC
Confidence 999999999999999863
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-113 Score=870.17 Aligned_cols=332 Identities=48% Similarity=0.807 Sum_probs=319.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC-CCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
|++||||||||||||.++|++.++ ++++|||||| .+++++++|||+|||+||+|++++++ +++.|.+||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 568999999999999999998876 4699999999 47999999999999999999999997 6889999999999999
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchh
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn 243 (453)
+++|.++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++ ++|+||||||++.|++. ++||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999998654 78999999999999875 789999999999
Q ss_pred hhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccc---cccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEE
Q 012940 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIAL 320 (453)
Q Consensus 244 ~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~---~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtav 320 (453)
||+|++|+||++|||+++.|||||+||.+|.++|++ ++||||+|++++||||++||+++++++|||+|+|||+++|+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~av 235 (337)
T PTZ00023 156 CLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAF 235 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEE
Confidence 999999999999999999999999999999999987 48999999999999999999999999999999999999999
Q ss_pred EeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEE
Q 012940 321 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVA 400 (453)
Q Consensus 321 RVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~ 400 (453)
||||++||++||+++++++ +++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+||++
T Consensus 236 RVPt~~~s~~dltv~l~k~-vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~ 314 (337)
T PTZ00023 236 RVPVPDVSVVDLTCKLAKP-AKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVS 314 (337)
T ss_pred EecccCeEEEEEEEEECCC-CCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEE
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCchhhhHHHHHHHHHhc
Q 012940 401 WYDNEWGYSQRVVDLAHLVATK 422 (453)
Q Consensus 401 WYDNE~GYs~r~vdl~~~~~~~ 422 (453)
|||||||||+||+||+.+|+++
T Consensus 315 WyDNE~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 315 WYDNEWGYSNRLLDLAHYITQK 336 (337)
T ss_pred EecCchhHHHHHHHHHHHHhhc
Confidence 9999999999999999999875
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-112 Score=864.21 Aligned_cols=335 Identities=57% Similarity=0.899 Sum_probs=322.1
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
|++||||||||||||.++|+++++ ++++||+|||+.++++++|||+|||+||+|+++++. +++.|.|||++|.++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 678999999999999999998876 469999999999999999999999999999999996 78999999999999999
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhh
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~ 244 (453)
++|+++||++.|+||||||||.|++++++++|+++|||||++|+|++++++ ++|+|||++.|++..++|||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~-~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDV-TIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCC-cEEecccHHHhccCCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999887555 4588999999986337899999999999
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeee
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv 324 (453)
|+|++|+||++|||+++.|||||+||++|+++|++++|+||+|++++||||++||+++++++|||+|+|||+|+|+||||
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt 236 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecC
Q 012940 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (453)
Q Consensus 325 ~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDN 404 (453)
+++|++||+++++++ +++|||+++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+||++||||
T Consensus 237 ~~~s~~dltv~l~k~-~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDN 315 (343)
T PRK07729 237 PNVSLVDLVVDVKRD-VTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDN 315 (343)
T ss_pred cCeEEEEEEEEECCC-CCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecC
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHHHHhcCC
Q 012940 405 EWGYSQRVVDLAHLVATKWP 424 (453)
Q Consensus 405 E~GYs~r~vdl~~~~~~~~~ 424 (453)
|||||+||+||+.||++++.
T Consensus 316 E~Gys~r~~dl~~~~~~~~~ 335 (343)
T PRK07729 316 EWGYSCRVVDLVTLVADELA 335 (343)
T ss_pred chHHHHHHHHHHHHHHhhcc
Confidence 99999999999999988655
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.9e-111 Score=869.63 Aligned_cols=330 Identities=52% Similarity=0.840 Sum_probs=317.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~-~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
+||||||||||||.++|++.++ ++++||+|||+ .++++++|||||||+||+|+++++..+++.|.|+|++|.|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 45999999995 89999999999999999999999853678999999999999999
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~L 245 (453)
+|+++||+++|+||||||||.|++++++++|+++||||||||+|++ |+|+||||||++.|++. ++||||||||||||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~L 240 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNCL 240 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999965 68999999999999875 78999999999999
Q ss_pred hhHHHHHhhhcCeeEEEEEeeeccccchhhhccc-cccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeee
Q 012940 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (453)
Q Consensus 246 apvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv 324 (453)
+|++|+||++|||+++.|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+|||+++|+||||
T Consensus 241 ap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv 320 (421)
T PLN02272 241 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPT 320 (421)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEecc
Confidence 9999999999999999999999999999999997 589999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecC
Q 012940 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (453)
Q Consensus 325 ~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDN 404 (453)
++||++||+++++++ +++|||+++|+++++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++++||++||||
T Consensus 321 ~~gs~~dltv~lek~-~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDN 399 (421)
T PLN02272 321 PNVSVVDLTCRLEKS-ASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDN 399 (421)
T ss_pred CceEEEEEEEEECCC-CCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecC
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHHHHhc
Q 012940 405 EWGYSQRVVDLAHLVATK 422 (453)
Q Consensus 405 E~GYs~r~vdl~~~~~~~ 422 (453)
||||||||+||+.+|++.
T Consensus 400 EwGys~R~~dl~~~~~~~ 417 (421)
T PLN02272 400 EWGYSNRVLDLIEHMALV 417 (421)
T ss_pred chhHHHHHHHHHHHHHhh
Confidence 999999999999999653
No 9
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-109 Score=841.38 Aligned_cols=331 Identities=42% Similarity=0.738 Sum_probs=319.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~-~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
+||||||||||||.++|+|+++++ ++++||||||+.++++++|||||||+||+|+++++. +++.|.|+|++|.+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 699999999999999999998743 479999999999999999999999999999999996 789999999999999999
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCccccCccCCeEEecCCcchhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~-d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~ 244 (453)
+|+++||++.|+|+||||||.|.+++++++|+++|||+|++|+|++ +.+ ++||||||++.|++. ++|||||||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCTTn~ 158 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVSNASCTTNC 158 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999975 534 599999999999875 7899999999999
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeee
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv 324 (453)
|+|++|+||++|||+++.|||||+||++|+++|++|+|+||+|++++||||++||++++++||||+|+||++++|+||||
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecC
Q 012940 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (453)
Q Consensus 325 ~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDN 404 (453)
++||++||+++++++ +++|||+++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+||++||||
T Consensus 239 ~~gs~~dl~v~~~~~-~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDN 317 (336)
T PRK13535 239 INVTAIDLSVTVKKP-VKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDN 317 (336)
T ss_pred cCcEEEEEEEEECCC-CCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcC
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHHHHh
Q 012940 405 EWGYSQRVVDLAHLVAT 421 (453)
Q Consensus 405 E~GYs~r~vdl~~~~~~ 421 (453)
|||||+||+||+.||++
T Consensus 318 E~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 318 EWGFANRMLDTTLAMAA 334 (336)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 99999999999999864
No 10
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-109 Score=842.06 Aligned_cols=331 Identities=46% Similarity=0.764 Sum_probs=319.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC-CCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
|++||||||||||||.++|++.++ ++++|++||| ..++++++|||||||+||+|+++++. +|+.|.|+|++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 568999999999999999998876 4699999999 57999999999999999999999986 7899999999999999
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchh
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn 243 (453)
+++|++++|+ |+|+||||||.|.+++++++|+++|||||++|+|++++|+||||||||++.|++..++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 99999999999999999999999999999999998887889999999999998733789999999999
Q ss_pred hhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEee
Q 012940 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323 (453)
Q Consensus 244 ~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVP 323 (453)
||+|++|+||++|||+++.|||||+||++|+++|++|+|+||+|++++||||++||++++++||||+|+||++++|+|||
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVP 235 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVP 235 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccccCCcEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEec
Q 012940 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYD 403 (453)
Q Consensus 324 v~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYD 403 (453)
|++||++||+++++++ +++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||
T Consensus 236 v~~gs~~dl~v~~~~~-~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyD 314 (334)
T PRK08955 236 LANASLTDCVFEVERD-TTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYD 314 (334)
T ss_pred cCCeEEEEEEEEECCC-CCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeC
Confidence 9999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHHh
Q 012940 404 NEWGYSQRVVDLAHLVAT 421 (453)
Q Consensus 404 NE~GYs~r~vdl~~~~~~ 421 (453)
||||||+||+||+.+|.+
T Consensus 315 NE~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 315 NEWGYANRTAELARKVGL 332 (334)
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 999999999999999864
No 11
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.9e-109 Score=839.37 Aligned_cols=330 Identities=48% Similarity=0.813 Sum_probs=317.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhhccccceeecCc-eEEEecCCeEEECCeEEEEEe
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~-~~~~~~a~LlkyDS~~G~f~~-~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
++||||||||||||..+|.+.++ ++++||+|||+ .++++++|||||||+||+|++ +++..+|+.|.++|++|.+++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 58999999999999999998865 57999999995 799999999999999999996 898656788999999999999
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchh
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn 243 (453)
+++|+++||+++|+||||||||.|++++++++|+++|||||+||+|++ |+|+||||||++.|++. ++||||||||||
T Consensus 83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTTn 159 (338)
T PLN02358 83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTTN 159 (338)
T ss_pred cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchHH
Confidence 999999999999999999999999999999999999999999999976 57999999999999875 789999999999
Q ss_pred hhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccc-cccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEe
Q 012940 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322 (453)
Q Consensus 244 ~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRV 322 (453)
||+|++|+||++|||+++.|||||+||++|+++|++ ++|+||+|++++||||++||++++++||||+|+||++|+|+||
T Consensus 160 ~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRV 239 (338)
T PLN02358 160 CLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRV 239 (338)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEe
Confidence 999999999999999999999999999999999997 5999999999999999999999999999999999999999999
Q ss_pred eecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEe
Q 012940 323 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 402 (453)
Q Consensus 323 Pv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WY 402 (453)
||++||++||+++++++ +++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++++|+++||
T Consensus 240 Pv~~gs~~dl~v~~~~~-~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~Wy 318 (338)
T PLN02358 240 PTVDVSVVDLTVRLEKA-ATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWY 318 (338)
T ss_pred eEcCeeEEEEEEEECCC-CCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEe
Confidence 99999999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhHHHHHHHHHh
Q 012940 403 DNEWGYSQRVVDLAHLVAT 421 (453)
Q Consensus 403 DNE~GYs~r~vdl~~~~~~ 421 (453)
||||||||||+||+.+|.+
T Consensus 319 DNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 319 DNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 9999999999999999864
No 12
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-109 Score=826.20 Aligned_cols=333 Identities=58% Similarity=0.921 Sum_probs=321.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
++||||||||||||+++|++.+++ .+||||||||+.+++++||||+|||+||+|+++++. +++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~-~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERD-GDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCC-CCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 379999999999999999999984 269999999999999999999999999999999985 788999999999999999
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHc-CCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~a-GAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~ 244 (453)
+|++|||+++|+|||+||||.|+++|.+++|+++ |||||+||+|+++ ++++||+|||++.|++. +.||||+||||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 5999999999986 48999999999999984 8999999999999
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeee
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv 324 (453)
|+|++|+|+++|||++|+|||+|+||++|+++|+||+||||+|++++||||++||++|++++|||+|+|||+|+++||||
T Consensus 157 Lap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 157 LAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred hHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecC
Q 012940 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 404 (453)
Q Consensus 325 ~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDN 404 (453)
+++|++||+++++|+ +|+||||++|++++++.|||+++|+|+|+||+||+|++||+|||+++|++++++|+|+++||||
T Consensus 237 ~~vs~~dl~v~l~k~-~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydN 315 (335)
T COG0057 237 PNVSVVDLTVELEKE-VTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDN 315 (335)
T ss_pred CCcEEEEEEEEeCCC-CCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEec
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CCchhhhHHHHHHHHHhcC
Q 012940 405 EWGYSQRVVDLAHLVATKW 423 (453)
Q Consensus 405 E~GYs~r~vdl~~~~~~~~ 423 (453)
||||++|++|+.++++..+
T Consensus 316 E~gys~r~vD~~~~~~~~~ 334 (335)
T COG0057 316 EWGYSNRVVDLLAMVAKAL 334 (335)
T ss_pred cccchHHHHHHHHHHhhhc
Confidence 9999999999988876543
No 13
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-108 Score=833.93 Aligned_cols=331 Identities=26% Similarity=0.455 Sum_probs=313.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhhccccceeecC-ceEEEecCCeEEECC-eEEEE
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~-~~~~~~a~LlkyDS~~G~f~-~~v~~~~~~~l~v~G-k~I~v 161 (453)
|++||||||||||||+++|+++++ ++++||||||+ +++++++|||+|||+||+|+ +++++ +++.|.+|| ++|.+
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 568999999999999999998876 46999999994 79999999999999999996 68986 688999999 89999
Q ss_pred EeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcc
Q 012940 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (453)
Q Consensus 162 ~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCT 241 (453)
+++++|+++||+++|+|+||||||.|.+.+.+.+|+++|||||||++|++ |+||||||||++.|++. ++||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999986 47999999999999876 7899999999
Q ss_pred hhhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccc---cccchhhhhhhhccccCCCchhHHHHhhccccCCceeEE
Q 012940 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGI 318 (453)
Q Consensus 242 Tn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~---~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgt 318 (453)
||||+|++|+||++|||++++|||||+|+ +|...|++ ++|+||+|++++||||++||++++++||||+|+||++|+
T Consensus 155 Tn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~ 233 (342)
T PTZ00353 155 AVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGS 233 (342)
T ss_pred HHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEE
Confidence 99999999999999999999999999997 67777774 489999999999999999999999999999999999999
Q ss_pred EEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCcee-cCCeEE
Q 012940 319 ALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVM-GDDMVK 397 (453)
Q Consensus 319 avRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~-~~~~vK 397 (453)
|+||||++||++||+++++++ +++||||++|+++++++|||||+|+|+|+||+||+|++ |+|||+.+|+++ +++|+|
T Consensus 234 avRVPt~~vs~vdltv~~~k~-~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vK 311 (342)
T PTZ00353 234 AFQVPVKKGCAIDMLVRTKQP-VSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHK 311 (342)
T ss_pred EEEccccCeEEEEEEEEECCC-CCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEE
Confidence 999999999999999999998 89999999999999999999999999999999999999 599999999994 889999
Q ss_pred EEEEecCCCchhhhHHHHHHHHHhcCC
Q 012940 398 VVAWYDNEWGYSQRVVDLAHLVATKWP 424 (453)
Q Consensus 398 l~~WYDNE~GYs~r~vdl~~~~~~~~~ 424 (453)
+++||||||||||||+||+++|.+.+.
T Consensus 312 v~~WYDNE~Gys~r~~dl~~~~~~~~~ 338 (342)
T PTZ00353 312 MVLWFDVECYYAARLLSLVKQLHQIHA 338 (342)
T ss_pred EEEEecCchHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999987544
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1.3e-108 Score=832.26 Aligned_cols=323 Identities=60% Similarity=0.935 Sum_probs=310.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCC-eEEECCe-EEEEEeCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~-~l~v~Gk-~I~v~~~~ 165 (453)
||||||||||||.++|+++++..++++||||||+.++++++|||+|||+||+|++++++ +++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence 79999999999999999887632469999999999999999999999999999999997 667 7999999 99999999
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~L 245 (453)
+|+++||+++|+||||||||.|++++++++|+++|||||++|+|++++ +||||||||++.|+.+ ++||||||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IISn~sCtTn~L 157 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIISNASCTTNCL 157 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEecCCchHHHH
Confidence 999999999999999999999999999999999999999999998874 8999999999999875 78999999999999
Q ss_pred hhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeeec
Q 012940 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325 (453)
Q Consensus 246 apvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv~ 325 (453)
+|++|+||++|||+++.|||||++|++|+++|++++|+||+|++++||||++||+++++++|||+|+||++++|+||||+
T Consensus 158 ap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 158 APLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCcee--cCCeEEEEEEec
Q 012940 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVM--GDDMVKVVAWYD 403 (453)
Q Consensus 326 ~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~--~~~~vKl~~WYD 403 (453)
+||++||+++++++ +++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++ |++++||++|||
T Consensus 238 ~gs~~dl~v~~~~~-~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyD 316 (327)
T TIGR01534 238 NVSLVDLVLNLEKD-TTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYD 316 (327)
T ss_pred CeEEEEEEEEECCC-CCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeC
Confidence 99999999999998 899999999999999999999999999999999999999999999999995 489999999999
Q ss_pred CCCchhhhHHH
Q 012940 404 NEWGYSQRVVD 414 (453)
Q Consensus 404 NE~GYs~r~vd 414 (453)
||||||+||+|
T Consensus 317 NE~gys~r~~d 327 (327)
T TIGR01534 317 NEWGYSNRVVD 327 (327)
T ss_pred CCceeeeEccC
Confidence 99999999987
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.5e-107 Score=842.58 Aligned_cols=335 Identities=39% Similarity=0.650 Sum_probs=319.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEc----CCCChhhhhhhhccccceeecCceEEEec-CCeEEECCeE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSGGVKNASHLLKYDSLLGTFKADVKIVD-NETISVDGKL 158 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~--~~~ieiVaIn----d~~~~~~~a~LlkyDS~~G~f~~~v~~~~-~~~l~v~Gk~ 158 (453)
+.||||||||||||+++|++.++. .++++||||| |..+++++||||+|||+||+|++++++.+ ++.|.+||+.
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNY 206 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEE
Confidence 569999999999999999998752 1469999995 57899999999999999999999998732 6899999999
Q ss_pred EEEEeCCCCCCCCccccCcc--EEEcCCCCCCChhhHHHHHH-cCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEE
Q 012940 159 IKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ-AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235 (453)
Q Consensus 159 I~v~~~~dp~~l~W~~~gvD--iVie~TG~f~s~e~a~~hl~-aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IV 235 (453)
|+++++++|+++||+++|+| +||||||.|.+++.+.+|++ +||||||||||+++ ++|+||||||++.|+++ ++||
T Consensus 207 I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~II 284 (477)
T PRK08289 207 IQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIV 284 (477)
T ss_pred EEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEE
Confidence 99999999999999999999 99999999999999999999 89999999999987 68999999999999875 7899
Q ss_pred ecCCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCce
Q 012940 236 SNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKL 315 (453)
Q Consensus 236 SnaSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKi 315 (453)
||||||||||+|++|+||++|||++++|||||+||++|+++|++|+++||+|++++||||++||++|+++||||+|+||+
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcc-cCCCCcceeeccc-CeEeecCCCCCcceEEeCCCCceecC
Q 012940 316 NGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA-EGPLKGILAVCDV-PLVSVDFRCSDVSSTIDSSLTMVMGD 393 (453)
Q Consensus 316 sgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa-~~~lkgil~~~~~-~~VS~Df~~~~~S~i~D~~~t~v~~~ 393 (453)
+|+|+||||++||++||+++++++ +++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|||+.+|+++ +
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~-vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g 442 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKE-TSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-G 442 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCC-CCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-C
Confidence 999999999999999999999998 89999999999999 5999999999999 799999999999999999999999 6
Q ss_pred CeEEEEEEecCCCchhhhHHHHHHHHHhcCC
Q 012940 394 DMVKVVAWYDNEWGYSQRVVDLAHLVATKWP 424 (453)
Q Consensus 394 ~~vKl~~WYDNE~GYs~r~vdl~~~~~~~~~ 424 (453)
+++||++||||||||||||+||+++|++.+.
T Consensus 443 ~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~~ 473 (477)
T PRK08289 443 NRAVLYVWYDNEFGYSCQVVRVMEQMAGVRY 473 (477)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999987654
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=5.2e-105 Score=806.34 Aligned_cols=323 Identities=43% Similarity=0.797 Sum_probs=311.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCC-CCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~-~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
||||||||||||.++|+|++++ .++++|++|||+.+.++++|||+|||+||+|+++++. +++.|.|+|+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999863 3569999999999999999999999999999999986 7899999999999999999
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCccccCccCCeEEecCCcchhhh
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~-d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~L 245 (453)
|+++||+++|+|+||||||.|.+++++++|+++||++|++|+|.+ +.+ ++||||||++.|++. ++||||||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCtTn~l 157 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVSNASCTTNCI 157 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEeCCCcHHHHH
Confidence 999999999999999999999999999999999999999999965 434 599999999999875 78999999999999
Q ss_pred hhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeeec
Q 012940 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325 (453)
Q Consensus 246 apvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv~ 325 (453)
+|++|+||++|||+++.|||||+||++|+++|++|+|+|++|.+++||||++||++++++||||+|+||++++||||||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecCC
Q 012940 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNE 405 (453)
Q Consensus 326 ~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE 405 (453)
+||++||+++++++ +++|||+++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+||++|||||
T Consensus 238 ~~s~~dl~v~~~~~-~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (325)
T TIGR01532 238 NVTALDLSVTTKRD-VKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNE 316 (325)
T ss_pred CcEEEEEEEEECCC-CCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCc
Confidence 99999999999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHH
Q 012940 406 WGYSQRVVD 414 (453)
Q Consensus 406 ~GYs~r~vd 414 (453)
||||+||+|
T Consensus 317 ~gys~r~~d 325 (325)
T TIGR01532 317 WGFANRMLD 325 (325)
T ss_pred ceeeeEccC
Confidence 999999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-80 Score=604.90 Aligned_cols=283 Identities=50% Similarity=0.830 Sum_probs=268.0
Q ss_pred hHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCCCCCCcccc
Q 012940 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (453)
Q Consensus 97 IGR~vlr~l~~r~~~~ieiVaInd~-~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp~~l~W~~~ 175 (453)
|||.++ + +. +++|++|||+ ++.++++|+++|||+||+|+++++. ++..+.++|+.|.++++++|..++|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 43 4999999997 8999999999999999999999997 6788889999999999999999999999
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhhhHHHHHhhh
Q 012940 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (453)
Q Consensus 176 gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~ 255 (453)
++|+|+|+||.|.+.+.+.+|+++||||||||+|+. |.|+||+|||+++|+++ ..||||+|||||||+|+.|+|||+
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnclaPlaKVi~d~ 150 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNCLAPLAKVIHDN 150 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhccccchhheeccc
Confidence 999999999999999999999999999999999998 58999999999999986 459999999999999999999999
Q ss_pred cCeeEEEEEeeeccccchhhhcccc-ccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeeecceeEEEEEE
Q 012940 256 LGIVKGAMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVV 334 (453)
Q Consensus 256 fGI~~~~mTTiha~Tg~Q~llD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv~~gs~vdltv 334 (453)
|||.+++|||+|++|++|+++|+|+ ++||.+|.+.+||||.+||++|+++|+||||+||++||++||||+ ++++||++
T Consensus 151 fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~ 229 (285)
T KOG0657|consen 151 FGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTC 229 (285)
T ss_pred cccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeec
Confidence 9999999999999999999999987 699999999999999999999999999999999999999999999 99999999
Q ss_pred EEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEecCCCchhhhHHH
Q 012940 335 NVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVD 414 (453)
Q Consensus 335 ~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE~GYs~r~vd 414 (453)
+++++ .++|+|+++++++++++||||| ||+ +| ++|||||||||+||+|
T Consensus 230 ~~~k~-a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvD 277 (285)
T KOG0657|consen 230 HLEKP-AKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVD 277 (285)
T ss_pred ccccc-cchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHH
Confidence 99999 7999999999999999999999 777 34 8999999999999999
Q ss_pred HHHHHHhc
Q 012940 415 LAHLVATK 422 (453)
Q Consensus 415 l~~~~~~~ 422 (453)
|+.||+++
T Consensus 278 l~~h~ask 285 (285)
T KOG0657|consen 278 LMEHMASK 285 (285)
T ss_pred HHHHHhcC
Confidence 99999864
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.5e-53 Score=431.89 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=207.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChh---hhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~---~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||||||||||.++|++.++ ++++||+||| .+++ +++|+++||++|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998865 5799999999 5777 788888999999444435664 5566766664
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~L 245 (453)
++++. .++|+|++|||.|...+.++.|+++|+|+|++++|+++...++||+|+|++.|.+. + ||||+|||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~L 142 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTGL 142 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhhH
Confidence 44443 26999999999999999999999999999999999875335799999999999764 3 999999999999
Q ss_pred hhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccC-CC---chhHHHHhhccccCCceeEEEEE
Q 012940 246 APFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVSLVMPQLKGKLNGIALR 321 (453)
Q Consensus 246 apvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt-~t---Gaakav~kVlPeL~gKisgtavR 321 (453)
+|++++|+++|||+++.|||+|+ |++|+ |+||+| ++||||+ +| +.++++++|||+|+ |+|+++|
T Consensus 143 ap~~~~L~~~fGI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 143 VRTLNAINDYSKVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHHhcCeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 99999999999999999999997 99994 889999 6999999 44 56899999999997 9999999
Q ss_pred eeecceeEEEEEEEEccCCCCHHHHHHHHHHccc
Q 012940 322 VPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAE 355 (453)
Q Consensus 322 VPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~ 355 (453)
|||+++|++||+++++++ +|+|||+++|++++.
T Consensus 211 VPt~~vs~~dl~v~l~~~-~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 211 VPTTLMHVHSIMVELKKP-VTKDDIIDILENTPR 243 (333)
T ss_pred eCCCCcEEEEEEEEECCC-CCHHHHHHHHHhCCc
Confidence 999999999999999998 899999999999874
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=6.7e-50 Score=367.10 Aligned_cols=157 Identities=57% Similarity=0.903 Sum_probs=152.8
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHHhhccccCCceeEEEEEeee
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gKisgtavRVPv 324 (453)
|+|++|+|+++|||+++.|||+|+||++|+++|++|+|+||+|++++||||++||+++++++|||+|+|||+|+++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt 80 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPT 80 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhccCcceeeEEeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEeecCCCCCcceEEeCCCCceecCCeEEEEEEe
Q 012940 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 402 (453)
Q Consensus 325 ~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~i~D~~~t~v~~~~~vKl~~WY 402 (453)
+++|++||+++++++ +++|||+++|+++++++++||++|+++|+||+||+|++||+|||..++++++++++|+++||
T Consensus 81 ~~~s~~dl~~~l~k~-~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 81 PNVSLHDLTVELEKP-VTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSEEEEEEEEEESSS-S-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred cccCceEEEEecccc-hhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-46 Score=380.11 Aligned_cols=260 Identities=22% Similarity=0.276 Sum_probs=205.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhc---cccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Llk---yDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
++||||||||||||.+++++.++ ++++|++|+|. ++++.+||++ || .||.++...+...+..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~------ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG------ 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC------
Confidence 47999999999999999999875 57999999996 6888999887 44 566666554311223333333
Q ss_pred eCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCC--CeEEeccCccccCccCCeEEecCCc
Q 012940 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI--PTYVVGVNEKDYDHEVANIVSNASC 240 (453)
Q Consensus 163 ~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dv--PtvV~gVN~~~~~~~~~~IVSnaSC 240 (453)
+++++. .++|+||||||.+.+.+.++.|+++| ++||+++|+++ ++ .+||||||++.|... ++|+||||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~--~~v~~~sC 140 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK--DYVRVVSC 140 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC--CcEEccCh
Confidence 233332 26999999999999999999999999 68999998744 22 247999999999653 38999999
Q ss_pred chhhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCC----CchhHHHHhhccccCCcee
Q 012940 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVSLVMPQLKGKLN 316 (453)
Q Consensus 241 TTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~----tGaakav~kVlPeL~gKis 316 (453)
|||||+|+||+||++|||+++.|||||++|+ + ++++ |++++||||.. +...+++++|+|+|+ ++
T Consensus 141 tT~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~-~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~ 208 (341)
T PRK04207 141 NTTGLCRTLCALDRAFGVKKVRATLVRRAAD-------P-KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--IT 208 (341)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c-chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eE
Confidence 9999999999999999999999999999984 2 3443 78999999741 233489999999996 99
Q ss_pred EEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccC----CCCcceeecccCeEeecCCCCCc
Q 012940 317 GIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG----PLKGILAVCDVPLVSVDFRCSDV 379 (453)
Q Consensus 317 gtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~----~lkgil~~~~~~~VS~Df~~~~~ 379 (453)
++|+||||++||+++|+++|+++ +|+|||+++|++++.= .-.|+.+ +.+++--.+=.|.|+
T Consensus 209 ~~avrVPv~~gh~~~v~v~l~~~-~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 209 TMAVKVPTTLMHMHSVNVELKKP-VTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred EEEEEcCCCCceEEEEEEEECCC-CCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 99999999999999999999998 8999999999998642 2245555 555544333344444
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=7.1e-47 Score=345.20 Aligned_cols=150 Identities=52% Similarity=0.864 Sum_probs=139.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCC-ChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||||||||||||.++|++..+ ++|+||+|||+. ++++++|||+|||+||+|+++++. +++.|.++|+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 6999999999999999999965 569999999996 999999999999999999999996 688999999999999999
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCc
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSC 240 (453)
+|+++||+++|||+|+||||.|.+++.++.|+++||||||+|+|+++..+||||+|||++.|+++ ++||||+||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccCC
Confidence 99999999999999999999999999999999999999999999987558999999999999987 499999999
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-42 Score=348.49 Aligned_cols=234 Identities=16% Similarity=0.208 Sum_probs=196.9
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCce-EEEecCCeEEECCeEEEEEe
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKAD-VKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~-v~~~~~~~l~v~Gk~I~v~~ 163 (453)
.++||| | +|.+||.++++|++|++ + +.++ +||. | . .+ .+++|.|+|+++.|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f---p---v~~l-------~l~~--s-------~~~s--~gk~i~f~g~~~~V-- 55 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL---E---IEQI-------SIVE--I-------EPFG--EEQGIRFNNKAVEQ-- 55 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC---c---hhhe-------eecc--c-------cccc--CCCEEEECCEEEEE--
Confidence 469999 9 99999999999999874 4 3433 4442 2 1 12 57899999999999
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCeEEecCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~IVSnaS 239 (453)
++++..+|+ ++|+||+ +|..+++++++.+.++|| +||++++ +++|+|++|||||++.+.. ++.+||+|||
T Consensus 56 -~~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPN 129 (322)
T PRK06901 56 -IAPEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPD 129 (322)
T ss_pred -EECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCc
Confidence 456666785 8999999 999999999999999999 8998875 8899999999999998875 2257999999
Q ss_pred cchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh-hhcccc---------cc-chhhhhhhhccccCC-CchhHHHHhh
Q 012940 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDASH---------RD-LRRARAAALNIVPTS-TGAAKAVSLV 307 (453)
Q Consensus 240 CTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~-llD~~~---------~d-~rr~Raaa~NIIPt~-tGaakav~kV 307 (453)
|||.+|+++|+|||+.|||+++.+||||++||+++ .++... ++ ....+++|||+||+. +|-..+.+||
T Consensus 130 CsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKI 209 (322)
T PRK06901 130 PQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKI 209 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999732 222210 00 122489999999998 5677888999
Q ss_pred ccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 012940 308 MPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (453)
Q Consensus 308 lPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa 354 (453)
||+| .++++||+||||++||++.++++|+++ ++.|+++++|++++
T Consensus 210 l~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~-~~~e~~~~~l~~~~ 254 (322)
T PRK06901 210 FPQL-ENVTFHSIQVPVFYGLAQMVTALSEYE-LDIESQLAEWQQNN 254 (322)
T ss_pred hCCc-ccEEEEEEEcceeccEEEEEEEEECCC-CCHHHHHHHHHhCC
Confidence 9887 259999999999999999999999999 89999999999876
No 23
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1e-41 Score=310.47 Aligned_cols=149 Identities=54% Similarity=0.877 Sum_probs=140.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+||||||||||||.++|++.++ +++++++|+|+.++++++|||+|||+||+|+.+++. +++.|.++|+.|.++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 5899999999999999998865 569999999988999999999999999999999986 6788999999999999999
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCc
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSC 240 (453)
|.++||+++|+|||+||||.|.+++.++.|+++||||||||+|+++ +.++||+|||++.|+++ ++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCCC
Confidence 9999999999999999999999999999999999999999999886 44699999999999876 679999999
No 24
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.8e-39 Score=332.34 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=188.5
Q ss_pred eeEEEEc-CChhHHHHHHHHH-hCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~-~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
+||||+| +|.|||.++++|+ ++.++..++ ++|. | ..+ ++..+.++|+.+.|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-------------~~~s--s-------~~s--~g~~~~f~~~~~~v~-- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-------------VFFS--T-------SQL--GQAAPSFGGTTGTLQ-- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-------------EEEE--c-------hhh--CCCcCCCCCCcceEE--
Confidence 3899999 9999999999888 555432332 2221 1 112 567788888887773
Q ss_pred CCCCCC-CccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCcc-CCeE--Eec
Q 012940 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANI--VSN 237 (453)
Q Consensus 165 ~dp~~l-~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~~-~~~I--VSn 237 (453)
+..++ .|. ++|+||+|+|...++++++++.++|+..+||++.+ +++|+|+|||+||++.+... +++| |+|
T Consensus 55 -~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian 131 (366)
T TIGR01745 55 -DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG 131 (366)
T ss_pred -cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC
Confidence 34444 564 79999999999999999999999994338998875 88899999999999988652 2567 899
Q ss_pred CCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcc--------------------------c
Q 012940 238 ASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLDA--------------------------S 279 (453)
Q Consensus 238 aSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~------------llD~--------------------------~ 279 (453)
|||||++|+++|+|||+.|||+++.+|||||+||+++ ++++ +
T Consensus 132 PNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 211 (366)
T TIGR01745 132 GNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGE 211 (366)
T ss_pred cCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCC
Confidence 9999999999999999999999999999999999852 1220 0
Q ss_pred cccchhhhhhhhccccCC-----CchhHHH-------Hhhccc-cCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHH
Q 012940 280 HRDLRRARAAALNIVPTS-----TGAAKAV-------SLVMPQ-LKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDV 346 (453)
Q Consensus 280 ~~d~rr~Raaa~NIIPt~-----tGaakav-------~kVlPe-L~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI 346 (453)
...-.+++++|+|+||+. +|+++++ +|||-. -..++++||+||||++||++.++++|+++ ++.+|+
T Consensus 212 ~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~-vs~e~i 290 (366)
T TIGR01745 212 LPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKD-VSLETI 290 (366)
T ss_pred CCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCC-CCHHHH
Confidence 011246899999999996 5777655 456622 12369999999999999999999999998 899999
Q ss_pred HHHHHHcc
Q 012940 347 NAAFRKAA 354 (453)
Q Consensus 347 ~~al~~aa 354 (453)
+++|+++.
T Consensus 291 ~~~L~~~~ 298 (366)
T TIGR01745 291 EEIIRAHN 298 (366)
T ss_pred HHHHHhCC
Confidence 99999853
No 25
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-39 Score=326.58 Aligned_cols=233 Identities=24% Similarity=0.389 Sum_probs=196.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
+||+|.| +|.+|+.++|+|.++..|.++++++... . + .++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~---------~--~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------R---------S--AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------c---------c--CCCeeeeCCceeEEe---
Confidence 6999999 9999999999999876677888777431 0 1 345555677666663
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCcc-CCeEEecCCcc
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVSNASCT 241 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap---s~d~dvPtvV~gVN~~~~~~~-~~~IVSnaSCT 241 (453)
++...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.+ +.++++|+++||||++.++.. +++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 45555784 89999999999999999999999998 788544 355578999999999999753 24799999999
Q ss_pred hhhhhhHHHHHhhhcCeeEEEEEeeecccc------------chhhhccc---cccchhhhhhhhccccCC-----Cchh
Q 012940 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG------------DQRLLDAS---HRDLRRARAAALNIVPTS-----TGAA 301 (453)
Q Consensus 242 Tn~Lapvlk~L~d~fGI~~~~mTTiha~Tg------------~Q~llD~~---~~d~rr~Raaa~NIIPt~-----tGaa 301 (453)
|+|++|+|+||+++|+|+++.|||+|++|| +|.++|++ ++++||+|++++||||+. +|++
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~ 210 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT 210 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence 999999999999999999999999999997 46677754 468899999999999996 7777
Q ss_pred HH-------HHhhc--cccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 012940 302 KA-------VSLVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (453)
Q Consensus 302 ka-------v~kVl--PeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~a 353 (453)
++ +.+++ |++ +|+++++||||++||+.+++++++++ ++.+||+++|+++
T Consensus 211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~-~~~~~v~~~l~~~ 268 (334)
T PRK14874 211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEP-ISVEEAREILAEA 268 (334)
T ss_pred HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCC-CCHHHHHHHHHcC
Confidence 66 46676 777 59999999999999999999999998 8999999999984
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=4.9e-39 Score=327.40 Aligned_cols=235 Identities=23% Similarity=0.344 Sum_probs=195.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
||+|+| +|.+|+.++|+|.++.+|.++++.+... .+ .+..+.+.|+.+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~----------------------~~--~g~~~~~~~~~~~~~~--- 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD----------------------RS--AGRKVTFKGKELEVNE--- 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc----------------------cc--CCCeeeeCCeeEEEEe---
Confidence 689999 9999999999998876566665444211 01 3556667676555532
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCcc-CCeEEecCCcch
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~~-~~~IVSnaSCTT 242 (453)
.+...|. ++|+||+|+|.+.+++++++|+++|+ +||+.++ +++++|++|||||++.++.. .++|||||+|+|
T Consensus 54 ~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 54 AKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred CChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 2223453 79999999999999999999999998 6886664 65579999999999999763 256999999999
Q ss_pred hhhhhHHHHHhhhcCeeEEEEEeeeccccc------------hhhhcccccc--------chhhhhhhhccccCC-----
Q 012940 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGD------------QRLLDASHRD--------LRRARAAALNIVPTS----- 297 (453)
Q Consensus 243 n~Lapvlk~L~d~fGI~~~~mTTiha~Tg~------------Q~llD~~~~d--------~rr~Raaa~NIIPt~----- 297 (453)
+|++++|+||+++|+|+++.|||+|++||+ |++++.++.+ .+|+|++++||||++
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 999999999999999999999999999996 4556665544 789999999999995
Q ss_pred CchhHHHHhhccccC-------CceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 012940 298 TGAAKAVSLVMPQLK-------GKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (453)
Q Consensus 298 tGaakav~kVlPeL~-------gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa 354 (453)
+|+++++.|+.|||+ .+|+++|+||||++||+.+++++++++ ++.||++++|++++
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~-v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKE-ISPEDVRELLKNAP 272 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCC-CCHHHHHHHHhcCC
Confidence 699999999999876 379999999999999999999999998 89999999998653
No 27
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=321.29 Aligned_cols=298 Identities=23% Similarity=0.276 Sum_probs=212.7
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCe-EEECCeEEEEEe
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVS 163 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~-l~v~Gk~I~v~~ 163 (453)
++||||+| +|.+|+.+++.|+++.+ +++.+ +++. | +.+ .|++ +.|.|+.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~~~~------------~~~A--S-------~rS--aG~~~~~f~~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PFEEL------------VLLA--S-------ARS--AGKKYIEFGGKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-CcceE------------EEEe--c-------ccc--cCCccccccCccccCcc
Confidence 36999999 99999999999999753 34422 2221 1 223 3444 889888777622
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCe-EEecC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVAN-IVSNA 238 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~-IVSna 238 (453)
.-.+.+.|+ ++||||+|.|...+++.++++.++|+ +||++.| +++|+|+|||+||++.+.. .+.+ ||+||
T Consensus 57 -~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 -DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred -ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 125667787 79999999999999999999999998 9998876 7889999999999998754 3244 99999
Q ss_pred CcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh-hhcccc----------ccchhhhhhhhccccCCC-----chhH
Q 012940 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDASH----------RDLRRARAAALNIVPTST-----GAAK 302 (453)
Q Consensus 239 SCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~-llD~~~----------~d~rr~Raaa~NIIPt~t-----Gaak 302 (453)
||||.+|++.||||+++|||+++.+|||||+||+.. .++... .-+-.++++|||+||+.. |++|
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~ 211 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTK 211 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccH
Confidence 999999999999999999999999999999999855 333211 000116889999999974 5777
Q ss_pred HHH-------hhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecc-cCeEeecC
Q 012940 303 AVS-------LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCD-VPLVSVDF 374 (453)
Q Consensus 303 av~-------kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~-~~~VS~Df 374 (453)
++. |||+.-..+++++|+||||++||++.++++|+++ ++.+|+.+.|-..+.+ .-+..-.+ -|..-.|-
T Consensus 212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~-~~~~e~~~~~l~~ap~--v~v~~~~~~~P~~~~d~ 288 (334)
T COG0136 212 EEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKD-VDPEEIREELLPSAPG--VVVVDNPEDRPQTPLDA 288 (334)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCC-CCHHHHHHHHhccCCC--cEEEeCCccCccChhhh
Confidence 665 5666555689999999999999999999999998 8999999665333322 22222111 34444555
Q ss_pred CCCCcceEEeCCCCce-ecCCeEEEEEEecC-CCchhhhHHHHHH
Q 012940 375 RCSDVSSTIDSSLTMV-MGDDMVKVVAWYDN-EWGYSQRVVDLAH 417 (453)
Q Consensus 375 ~~~~~S~i~D~~~t~v-~~~~~vKl~~WYDN-E~GYs~r~vdl~~ 417 (453)
.|.. .++-...-.- +.++.+++..==|| -||=+--.+-+++
T Consensus 289 ~g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE 331 (334)
T COG0136 289 TGGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAE 331 (334)
T ss_pred cCCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHH
Confidence 5555 2222222111 12334666665676 3554444443333
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-35 Score=301.25 Aligned_cols=235 Identities=18% Similarity=0.322 Sum_probs=188.3
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
.+||||+| +|.+|+.++|+|+++ ++|++ .++ +++ .| +.+ .|+.+.+.|+.+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h--~~f~v---~~l-------~~~--aS-------~~s--aGk~~~~~~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKE--TKFNI---AEV-------TLL--SS-------KRS--AGKTVQFKGREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHC--CCCCc---ccE-------EEE--EC-------ccc--CCCCeeeCCcceEEEe-
Confidence 47999999 999999999999964 34662 111 122 12 112 5778888888777743
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCccCCeEEecCCcc
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCT 241 (453)
-+++ .|. ++|+||+|+|...++++++++.++|+ +||+.++ +++++|++||+||.+.+... .+||+||+|+
T Consensus 61 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIanPnC~ 133 (347)
T PRK06728 61 AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAVPNCS 133 (347)
T ss_pred CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEECCCCH
Confidence 3444 353 79999999999999999999999998 7887764 77789999999999998764 4799999999
Q ss_pred hhhhhhHHHHHhhhcCeeEEEEEeeeccccchh-hhcc------------ccccchhh-------hhhhhccccCC----
Q 012940 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDA------------SHRDLRRA-------RAAALNIVPTS---- 297 (453)
Q Consensus 242 Tn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~-llD~------------~~~d~rr~-------Raaa~NIIPt~---- 297 (453)
|++++..|+||+++++|+++.++|||++||+.+ .++. +...-.++ ++++||+||+.
T Consensus 134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~ 213 (347)
T PRK06728 134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFT 213 (347)
T ss_pred HHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccc
Confidence 999999999999999999999999999999743 2222 11122456 99999999997
Q ss_pred -CchhHHH-------Hhhc--cccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 012940 298 -TGAAKAV-------SLVM--PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (453)
Q Consensus 298 -tGaakav-------~kVl--PeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa 354 (453)
+|+++++ +||| |+| ++++||+||||++||.+.++++|+++ ++.|+++++|++++
T Consensus 214 ~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~-~~~~~~~~~l~~~~ 277 (347)
T PRK06728 214 DNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKE-ATVAEIKEVLFDAP 277 (347)
T ss_pred cCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCC-CCHHHHHHHHHcCC
Confidence 6666655 4566 444 69999999999999999999999998 89999999998764
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3e-35 Score=302.01 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=184.1
Q ss_pred eeEEEEc-CChhHHHHHH-HHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr-~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
+||||+| +|.+|+.++| +|++++++..+++... | ..+ ++..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~s---------------s-------~~s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFS---------------T-------SQA--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEec---------------c-------hhh--CCcccccCCCcceEEec
Confidence 7999999 9999999998 6665543222233321 1 001 33445677877766543
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCcc-CC--eEEecC
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VA--NIVSNA 238 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~~-~~--~IVSna 238 (453)
.+++ .|. ++|+||+|+|...++++++++.++|++.+||+.++ +++|+|++||+||++.+... .. ++|+||
T Consensus 58 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 3333 353 79999999999999999999999996548998775 77899999999999988642 12 489999
Q ss_pred CcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh------------hhc-------------------------c-cc
Q 012940 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLD-------------------------A-SH 280 (453)
Q Consensus 239 SCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~------------llD-------------------------~-~~ 280 (453)
+|+|++++..|+||++.++|+++.++|||++||+++ +++ + +.
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDL 213 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCC
Confidence 999999999999999999999999999999999843 111 0 00
Q ss_pred ccchhhhhhhhccccCC-----CchhHHHH-------hhc----cccCCceeEEEEEeeecceeEEEEEEEEccCCCCHH
Q 012940 281 RDLRRARAAALNIVPTS-----TGAAKAVS-------LVM----PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAE 344 (453)
Q Consensus 281 ~d~rr~Raaa~NIIPt~-----tGaakav~-------kVl----PeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~e 344 (453)
..-.+++++++|+||+. +|+++++. ||| |+| ++++||+||||++||++.++++|+++ ++.+
T Consensus 214 ~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~gHs~sv~ve~~~~-~~~~ 290 (369)
T PRK06598 214 PTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMRCHSQALTIKLKKD-VPLA 290 (369)
T ss_pred CcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceeccEEEEEEEEECCC-CCHH
Confidence 11145789999999996 57776654 566 344 69999999999999999999999998 8999
Q ss_pred HHHHHHHHcc
Q 012940 345 DVNAAFRKAA 354 (453)
Q Consensus 345 eI~~al~~aa 354 (453)
|++++|+++.
T Consensus 291 ~i~~~L~~~~ 300 (369)
T PRK06598 291 EIEEILAAHN 300 (369)
T ss_pred HHHHHHHhcC
Confidence 9999999853
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-31 Score=271.93 Aligned_cols=295 Identities=18% Similarity=0.209 Sum_probs=213.0
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
+++||||+| +|.+|+.++|+|.++++|.++|+.+... .+ .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~----------------------~s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE----------------------ES--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc----------------------Cc--CCceEEECCcceEEE-
Confidence 468999999 9999999999999977777887666421 12 467777888777763
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCeEEecCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~IVSnaS 239 (453)
++++++|. ++|+||+|+|...++++++++.++|+ +||+.++ +++++|+++||||.+.++. .+.+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56778886 79999999999999999999999999 6887664 5558999999999966543 2267999999
Q ss_pred cchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh------------hhcc-ccccchhhhhhhhccccCCC---chhH-
Q 012940 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR------------LLDA-SHRDLRRARAAALNIVPTST---GAAK- 302 (453)
Q Consensus 240 CTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~------------llD~-~~~d~rr~Raaa~NIIPt~t---Gaak- 302 (453)
|+|++++..|+||+++++|+++.|+|++++||+.+ ++++ +.+...+++++++|++|+.. |...
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~ 211 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVRE 211 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchH
Confidence 99999999999999999999999999999999854 2222 11123567889999999942 2322
Q ss_pred ------HHHhhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEe--ecC
Q 012940 303 ------AVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVS--VDF 374 (453)
Q Consensus 303 ------av~kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS--~Df 374 (453)
+++++|..-+.+++.|++||||++||+..++++++++ ++.+++.++|++++ +|.=+.+...-. -|-
T Consensus 212 erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~-v~~~~i~~~l~~~p-----~v~v~~~~~~P~~~~~v 285 (336)
T PRK08040 212 ERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRP-LAAEEARDALEQGE-----DIVLSEENDYPTQVGDA 285 (336)
T ss_pred hhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCC-CCHHHHHHHHhcCC-----CEEEECCCCCCCchhHc
Confidence 3445552112248999999999999999999999998 89999999999843 222222211111 122
Q ss_pred CCCCcceEEeCCCCceec----CCeEEEEEEecCC-CchhhhHHHHHHHHHh
Q 012940 375 RCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNE-WGYSQRVVDLAHLVAT 421 (453)
Q Consensus 375 ~~~~~S~i~D~~~t~v~~----~~~vKl~~WYDNE-~GYs~r~vdl~~~~~~ 421 (453)
.|..+..| +.... ++.+.+++=-||= .|=+-.-|-+++++.+
T Consensus 286 ~g~n~~~V-----gr~~~~~~~~~~l~~~~~~DNL~KGAAg~AVQiae~l~~ 332 (336)
T PRK08040 286 SGNPHLSI-----GCVRNDYGMPEQLQFWSVADNVRFGGALMAVKTAEKLVQ 332 (336)
T ss_pred CCCceEEE-----EEEEccCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 34332211 11111 2356666667874 3555555666666554
No 31
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.97 E-value=8.8e-31 Score=267.52 Aligned_cols=240 Identities=17% Similarity=0.230 Sum_probs=187.3
Q ss_pred cccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEE
Q 012940 82 ETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (453)
Q Consensus 82 ~~~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~ 160 (453)
.|.+++||+|.| +|.+|+.++|+|.+++.|.++++.+... .+ .|+.+.++|+.+.
T Consensus 3 ~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~----------------------rs--aGk~~~~~~~~~~ 58 (344)
T PLN02383 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA----------------------RS--AGKKVTFEGRDYT 58 (344)
T ss_pred ccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc----------------------CC--CCCeeeecCceeE
Confidence 456678999999 9999999999999876677776655321 11 3555556665555
Q ss_pred EEeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCcc-----CC
Q 012940 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-----VA 232 (453)
Q Consensus 161 v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~~-----~~ 232 (453)
+. .-+++ .|. ++|+||+|+|...+++++++..++|+ +||+.++ +++++|+++||||.+.+... ++
T Consensus 59 v~-~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~ 131 (344)
T PLN02383 59 VE-ELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKG 131 (344)
T ss_pred EE-eCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCC
Confidence 52 22332 343 79999999999999999999999998 6776654 66789999999999988653 14
Q ss_pred eEEecCCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchh-hhcccc------------ccchhhhhhhhccccCC--
Q 012940 233 NIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDASH------------RDLRRARAAALNIVPTS-- 297 (453)
Q Consensus 233 ~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~-llD~~~------------~d~rr~Raaa~NIIPt~-- 297 (453)
+||+||+|+|++++..|+||+++++|+++.++|++++||+.+ .++..+ ..-+++...++|++|+.
T Consensus 132 ~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~ 211 (344)
T PLN02383 132 ALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAP 211 (344)
T ss_pred cEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCc
Confidence 599999999999999999999999999999999999999844 333322 22256788999999986
Q ss_pred ---CchhHHHH-------hhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHc
Q 012940 298 ---TGAAKAVS-------LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA 353 (453)
Q Consensus 298 ---tGaakav~-------kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~a 353 (453)
+|+++++. |++-.-+.+++.||+|||+++||+..++++++++ ++.+++.++|+++
T Consensus 212 ~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~-v~~~~~~~~l~~~ 276 (344)
T PLN02383 212 MQENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKP-LDEATAREILASA 276 (344)
T ss_pred cccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCC-CCHHHHHHHHhcC
Confidence 35544443 4541112359999999999999999999999998 8999999999974
No 32
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=1.6e-30 Score=264.89 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=186.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
++||||.| +|.+|+.++|+|.++..|.++++.+... . + .|+.|.+.|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~------------~----------~--aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS------------E----------S--AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc------------c----------c--CCCeeccCCcceEEe--
Confidence 37999999 9999999999999876677777666432 0 1 355566666555552
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCeEEecCCc
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~IVSnaSC 240 (453)
+++..+|+ ++|+||.|+|...+.+++++++++|+ +||+.++ .+ ++|++|||||.+.+.. .+.+||+||+|
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC 131 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSA 131 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCc
Confidence 33334464 79999999999999999999999998 4675553 44 8999999999998875 22589999999
Q ss_pred chhhhhhHHHHHhhhcCeeEEEEEeeeccccchh-hhcc------------ccccchhhhhhhhccccCCC-----chhH
Q 012940 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQR-LLDA------------SHRDLRRARAAALNIVPTST-----GAAK 302 (453)
Q Consensus 241 TTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~-llD~------------~~~d~rr~Raaa~NIIPt~t-----Gaak 302 (453)
+|++++..|+||++.|+++++.++|++++||+.+ .++. +...-.++++++||++|+.. |.++
T Consensus 132 ~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~ 211 (336)
T PRK05671 132 SAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTA 211 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccH
Confidence 9999999999999999999999999999999743 1111 11122578999999999863 6666
Q ss_pred HHHhhcccc-------CCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcc
Q 012940 303 AVSLVMPQL-------KGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 354 (453)
Q Consensus 303 av~kVlPeL-------~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa 354 (453)
++.|+.||+ +.+++.|++||||++||+..++++++++ ++.+|++++|++++
T Consensus 212 eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~-~~~~~~~~~l~~~~ 269 (336)
T PRK05671 212 LERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAP-VDLAAVNAALEAAP 269 (336)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCC-CCHHHHHHHHhCCC
Confidence 665554443 3359999999999999999999999998 89999999999543
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.97 E-value=1.1e-29 Score=258.61 Aligned_cols=258 Identities=21% Similarity=0.266 Sum_probs=188.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCC-Ch-hhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~-~~-~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
+||||+| +|.+|+.++|+|.++ +.++|+++-+.. .. +.+..++.+. .|+.+.+ .+ ..+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~~--------~~----~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWI-EPGDMPE--------YV----RDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhcccc-ccCCCcc--------cc----ceeEE-E
Confidence 5899999 899999999999876 458998885431 00 1111111000 0000000 00 12233 2
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeccCccccCc-c-------CCeE
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E-------VANI 234 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap-s~d~dvPtvV~gVN~~~~~~-~-------~~~I 234 (453)
.-+++ .| .++|+||+|++...+.+.++...++|++.+..|+. +.++++|+++|++|++.|.. . +.+|
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 22332 34 37999999999999999999998999853333443 35567899999999987753 1 2469
Q ss_pred EecCCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchh----HHHHhhccc
Q 012940 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA----KAVSLVMPQ 310 (453)
Q Consensus 235 VSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaa----kav~kVlPe 310 (453)
|+||+|+|+|+++.|+||+++++|+++.|||+|++||+++.... .+.+++|++|+..+.. .++.++|+.
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999864211 2468999999987752 467888987
Q ss_pred cCC--------ceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeecccCeEee
Q 012940 311 LKG--------KLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSV 372 (453)
Q Consensus 311 L~g--------KisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~~~VS~ 372 (453)
+.+ +++.+++|||+++||+.+++++++++ ++.+|++++|+++.+.++...+--+.+|+|-.
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKK-FDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCC-CCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 643 59999999999999999999999998 89999999999987765544444455666644
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=4.1e-29 Score=255.23 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=176.1
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE-cCCCChh-hhhhhhccccceeecCceEEEecCCeEEECCeEEEE
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVK-NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI-nd~~~~~-~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v 161 (453)
|++||+|+| +|.+|+.++|+|.++ +.++|+++ ....... .+..++.+. .+|.+.+. + +.+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~-~~~~~~~~----------~--~~~~v 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQ-LDGPIPEE----------V--ADMEV 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCccccccccc-cccccccc----------c--cceEE
Confidence 578999999 999999999999865 56899998 3221100 000000000 00001100 0 12333
Q ss_pred EeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeccCccccCc---------cC
Q 012940 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH---------EV 231 (453)
Q Consensus 162 ~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap-s~d~dvPtvV~gVN~~~~~~---------~~ 231 (453)
. ..+++. |. ++|+||+|++...+.+.+++..++|++.+..|+. ...+++|++++++|++.|.. .+
T Consensus 67 ~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 67 V-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred E-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 2 234443 32 6999999999999999988888899853333432 23336899999999987642 11
Q ss_pred CeEEecCCcchhhhhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCch--------hHH
Q 012940 232 ANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--------AKA 303 (453)
Q Consensus 232 ~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGa--------aka 303 (453)
.+|||||+|+|+|+++.|+||++ |||+++.|||+|++||+++-. +..+.+++|++|+..+. .+.
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~-------~~~~~~~~N~~p~~~~~ehrh~~Ei~~~ 213 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG-------VPSMDIVDNVIPYIGGEEEKIEKETLKI 213 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc-------chhhhhhcCcccccCchhhhhhHHHHHH
Confidence 36999999999999999999999 999999999999999997522 22467999999998775 233
Q ss_pred HHhh----ccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHccc
Q 012940 304 VSLV----MPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAE 355 (453)
Q Consensus 304 v~kV----lPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~ 355 (453)
++++ +|.++.+|+++++|||+++||+.+++++++++ ++.+||+++|+++..
T Consensus 214 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~-~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 214 LGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKED-VDPEEIREALESFKG 268 (349)
T ss_pred hhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCC-CCHHHHHHHHHhccC
Confidence 3333 45567889999999999999999999999998 899999999998764
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.93 E-value=2.3e-24 Score=220.03 Aligned_cols=299 Identities=16% Similarity=0.140 Sum_probs=196.9
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
|++||||.| +|.||+.++|.|.++ ++++++++-+..... ..+. ..|+.+.. +. ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g---~~l~--~~~~~~~~-----------~~--~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAG---KPLS--DVHPHLRG-----------LV--DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccC---cchH--HhCccccc-----------cc--Ccee-e
Confidence 568999999 799999999999865 568998887531100 0010 00111110 00 0111 1
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCC-C------------------CCeEEec
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGA-D------------------IPTYVVG 221 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~-d------------------vPtvV~g 221 (453)
+.+...|. ++|+||.|++.....+.+...+++|+ +||+.++ +++ + +|..+||
T Consensus 60 --~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 12222343 69999999999999999999999986 7887664 433 4 7999999
Q ss_pred cCccccCccCCeEEecCCcchhhhhhHHHHHhhhcCee--EEEEEeeeccccchh-hhccccccchhhhhhhhccccCCC
Q 012940 222 VNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTST 298 (453)
Q Consensus 222 VN~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~--~~~mTTiha~Tg~Q~-llD~~~~d~rr~Raaa~NIIPt~t 298 (453)
+|.+.+.. .+||+||+|+|++++..|+||++..+|+ ++.++|++++||+.+ .++..+...+.+.-.++|++|+.+
T Consensus 134 ~~~~~i~~--~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~h 211 (343)
T PRK00436 134 LNREEIKG--ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHRH 211 (343)
T ss_pred cCHHHhcC--CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCCC
Confidence 99998875 4799999999999999999999998898 899999999999865 444433111222223777777653
Q ss_pred chhHHHHhhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccCCCCcceeeccc---CeEeecCC
Q 012940 299 GAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDV---PLVSVDFR 375 (453)
Q Consensus 299 Gaakav~kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~~lkgil~~~~~---~~VS~Df~ 375 (453)
..++.+.+-.+.++++.+++|||+++||++.++++++++ ++.+|++++|++.-++ -++| .+.++ |-. .|..
T Consensus 212 --~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~-~~~~~~~~~~~~~y~~-~~~v-~v~~~~~~p~~-~~v~ 285 (343)
T PRK00436 212 --TPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDP-VTAEDVRAAYEEFYAD-EPFV-RVLPEGQYPET-KSVR 285 (343)
T ss_pred --HHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCC-CCHHHHHHHHHHHhCC-CCcE-EEeCCCCCcch-hhhC
Confidence 344444443332279999999999999999999999998 8999999999864322 1222 22222 111 1234
Q ss_pred CCCcceEEeCCCCceecCCeEEEEEEecCC-CchhhhHHHHHHHHHh
Q 012940 376 CSDVSSTIDSSLTMVMGDDMVKVVAWYDNE-WGYSQRVVDLAHLVAT 421 (453)
Q Consensus 376 ~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE-~GYs~r~vdl~~~~~~ 421 (453)
|..+-.|- .... ..++.+.+++=-||= .|=+-.-|-.++.+..
T Consensus 286 g~~~~~ig-~~~d--~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~~g 329 (343)
T PRK00436 286 GSNFCDIG-FAVD--ERTGRLVVVSAIDNLVKGAAGQAVQNMNIMFG 329 (343)
T ss_pred CCCeEEEE-EEEc--CCCCEEEEEEEecccchhHHHHHHHHHHHHcC
Confidence 44332221 0000 013467777778884 3555555555665533
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.91 E-value=7.6e-24 Score=216.53 Aligned_cols=298 Identities=18% Similarity=0.170 Sum_probs=189.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCe-EEEEEeC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVVSN 164 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk-~I~v~~~ 164 (453)
+||||.| +|.+|+.++|.|.++ |.++++++-++-. .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 799999999999865 6789887632200 000001 01111111 10 1112 11
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCC-------------------CCCeEEecc
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGA-------------------DIPTYVVGV 222 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~-------------------dvPtvV~gV 222 (453)
.++++ |.+ ++|+||.|++...+++.+++.+++|+ +||+.++ +++ ++|..+||+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12222 322 69999999999999999999999996 5776553 443 589999999
Q ss_pred CccccCccCCeEEecCCcchhhhhhHHHHHhhhcCee--EEEEEeeeccccchh-hhccccccchhhhhhhhccccCCCc
Q 012940 223 NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTG 299 (453)
Q Consensus 223 N~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~--~~~mTTiha~Tg~Q~-llD~~~~d~rr~Raaa~NIIPt~tG 299 (453)
|.+.+.. .+||+||+|.|+++...|+||++++.|+ ++.++|++++||+.+ ..+..+...+...-...|++|+.
T Consensus 135 n~~~i~~--~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~-- 210 (346)
T TIGR01850 135 HREEIKG--ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHR-- 210 (346)
T ss_pred CHHHhCC--CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcC--
Confidence 9998865 5799999999999999999999998887 799999999999975 33333321111111123444433
Q ss_pred hhHHHHhhcccc---CCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccC-CCCcceeeccc---CeEee
Q 012940 300 AAKAVSLVMPQL---KGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG-PLKGILAVCDV---PLVSV 372 (453)
Q Consensus 300 aakav~kVlPeL---~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~-~lkgil~~~~~---~~VS~ 372 (453)
...++.+.+-.+ +.+++.|++|||+++||+..++++++++ ++.+|++++|++.-++ ++ | .+.++ |-. .
T Consensus 211 h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~-~~~~~~~~~~~~~y~~~~~--V-~v~~~~~~p~~-~ 285 (346)
T TIGR01850 211 HTPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDG-LTEEDLRAAYEEFYADEPF--V-RVLPEGEYPST-K 285 (346)
T ss_pred cHHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCC-CCHHHHHHHHHHHhCCCCc--E-EEeCCCCCcCh-H
Confidence 223333332211 2359999999999999999999999998 8999999999865432 22 2 22221 111 1
Q ss_pred cCCCCCcceEEeCCCCceecCCeEEEEEEecCCC-chhhhHHHHHHHHHhc
Q 012940 373 DFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEW-GYSQRVVDLAHLVATK 422 (453)
Q Consensus 373 Df~~~~~S~i~D~~~t~v~~~~~vKl~~WYDNE~-GYs~r~vdl~~~~~~~ 422 (453)
+..|..+-.|- .... ...+.+.+++=-||=. |=|-+-|-.++.|...
T Consensus 286 ~v~g~n~~~ig-~~~d--~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~g~ 333 (346)
T TIGR01850 286 AVIGSNFCDIG-FAVD--ERTGRVVVVSAIDNLVKGAAGQAVQNMNLMFGF 333 (346)
T ss_pred HhcCCCeEEEE-EEEc--CCCCEEEEEEEeechhhhHHHHHHHHHHHHcCC
Confidence 33344432221 1000 0124566666678743 5566666666666543
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.91 E-value=2.7e-23 Score=215.18 Aligned_cols=301 Identities=13% Similarity=0.088 Sum_probs=192.6
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 84 ~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
.|++||+|.| +|.+|+.++|+|.++ |.++|+.+..... .|+- +.. .... +.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~s-------------aG~~---i~~-~~~~--l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRK-------------AGQS---FGS-VFPH--LITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhh-------------cCCC---chh-hCcc--ccCccccce
Confidence 4778999999 999999999999988 5689887753200 0110 000 0000 111111111
Q ss_pred eCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCC--------CCeEEeccCccc-cCc-
Q 012940 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGAD--------IPTYVVGVNEKD-YDH- 229 (453)
Q Consensus 163 ~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~d--------vPtvV~gVN~~~-~~~- 229 (453)
. +.+..+|. ++|+||.|+|.-.+.+.++. +++|+ +||+.++ .+++ +|..+|++|.+. |.-
T Consensus 95 ~--~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 V--AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred e--cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 1 12222353 79999999999999999887 47786 5675543 5556 799999999884 431
Q ss_pred -------cCCeEEecCCcchhhhhhHHHHHhhhcCe--eEEEEEeeeccccchhh-hcccc-ccc-hhhhhhhhccccCC
Q 012940 230 -------EVANIVSNASCTTNCLAPFVKVMDEELGI--VKGAMTTTHSYTGDQRL-LDASH-RDL-RRARAAALNIVPTS 297 (453)
Q Consensus 230 -------~~~~IVSnaSCTTn~Lapvlk~L~d~fGI--~~~~mTTiha~Tg~Q~l-lD~~~-~d~-rr~Raaa~NIIPt~ 297 (453)
.+.+||+||+|.|+++...|+||+++++| +++.++|++++||+.+- .+..+ ... .--|+.++|..|+.
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~ 247 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHV 247 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCc
Confidence 22579999999999999999999999999 78999999999998652 23212 110 01266788888776
Q ss_pred CchhHHHHhhc-cccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHc-ccCCCCcceeecccCeEeecCC
Q 012940 298 TGAAKAVSLVM-PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKA-AEGPLKGILAVCDVPLVSVDFR 375 (453)
Q Consensus 298 tGaakav~kVl-PeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~a-a~~~lkgil~~~~~~~VS~Df~ 375 (453)
....+.+.+++ +.+ +++.|++|||+++||+..++++++++ ++.+|+.++|+++ +..++-.++.-.+-|-. .|..
T Consensus 248 pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~-~~~~~v~~~~~~~y~~~~fV~~~~~~~~P~~-~~v~ 323 (381)
T PLN02968 248 PEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPG-VTAEDLHQHLKERYEGEEFVKVLERGAVPHT-DHVR 323 (381)
T ss_pred chHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCC-CCHHHHHHHHHHhCCCCCEEEeCCCCCCCCh-HHHC
Confidence 32222233443 333 59999999999999999999999998 8999999999995 33333322211000111 1333
Q ss_pred CCCcceEEeCCCCcee--cCCeEEEEEEecCC-CchhhhHHHHHHHHHh
Q 012940 376 CSDVSSTIDSSLTMVM--GDDMVKVVAWYDNE-WGYSQRVVDLAHLVAT 421 (453)
Q Consensus 376 ~~~~S~i~D~~~t~v~--~~~~vKl~~WYDNE-~GYs~r~vdl~~~~~~ 421 (453)
|..+..| +... ..+.+.+++=-||= .|=+-+-|-.++.|..
T Consensus 324 gtn~~~i-----g~~~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nl~~g 367 (381)
T PLN02968 324 GSNYCEL-----NVFADRIPGRAIIISVIDNLVKGASGQAVQNLNLMMG 367 (381)
T ss_pred CCCcEEE-----EEEEeCCCCEEEEEEEeccHHHHHHHHHHHHHHHHhC
Confidence 4432221 1111 13456666667883 2555555556665544
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.87 E-value=5.6e-22 Score=193.01 Aligned_cols=238 Identities=18% Similarity=0.220 Sum_probs=172.4
Q ss_pred eEE-EEc-CChhHHHHHHHHHhCCCCCceEEEEcCC---CChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 88 KVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS---GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 88 kVa-InG-fGrIGR~vlr~l~~r~~~~ieiVaInd~---~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
|+| |.| +|.+|+.|+-+|.++ |.++|-....+ ++..|. + -|+|+.+.-..+ .-..+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya---~-----a~~wkqt~~lp~------~~~e~~V- 67 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYA---F-----AGNWKQTDLLPE------SAHEYTV- 67 (361)
T ss_pred cccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceE---e-----cccchhcccccc------hhhhhhH-
Confidence 566 999 999999999999877 56776544322 222211 1 133332221100 0023444
Q ss_pred eCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc----------
Q 012940 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH---------- 229 (453)
Q Consensus 163 ~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~---------- 229 (453)
++-+++.|. ++||||+..+...+.|.-+.+.++|- +|+|+.. +.+++|+|||+||+++++.
T Consensus 68 ~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~ 141 (361)
T KOG4777|consen 68 EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKM 141 (361)
T ss_pred hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCC
Confidence 234566553 79999999999999999889999997 8888764 6668999999999998764
Q ss_pred cCCeEEecCCcchhhhhhHHHHHhhhc-CeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhH----HH
Q 012940 230 EVANIVSNASCTTNCLAPFVKVMDEEL-GIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK----AV 304 (453)
Q Consensus 230 ~~~~IVSnaSCTTn~Lapvlk~L~d~f-GI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaak----av 304 (453)
.+.-||+|+||+|..++..|||||++| .|++..++|||+.||+...-- ...-.+..||+|...|... +.
T Consensus 142 ~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apg------v~~vdildnilp~iggee~k~ewet 215 (361)
T KOG4777|consen 142 GKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPG------VELVDILDNILPGIGGEENKFEWET 215 (361)
T ss_pred CCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCC------chHHHHHHhhcCCCCccchhhhHHH
Confidence 224599999999999999999999999 599999999999999853111 1123467799998866532 33
Q ss_pred HhhccccC-----------CceeEEEEEeeecceeEEEEEEEEccCC-CCHHHHHHHHHHcc
Q 012940 305 SLVMPQLK-----------GKLNGIALRVPTPNVSVVDLVVNVEKKG-ITAEDVNAAFRKAA 354 (453)
Q Consensus 305 ~kVlPeL~-----------gKisgtavRVPv~~gs~vdltv~lek~~-vt~eeI~~al~~aa 354 (453)
.|+|-.++ .++++.|-|||+.++|+..+.+.|.-++ -+.+|+.+.+.+..
T Consensus 216 ~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777|consen 216 AKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred HHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhcc
Confidence 55653322 2477899999999999999999998432 46899999998876
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.85 E-value=2.5e-20 Score=188.45 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=161.4
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
|++||||+| +|-+|+.++|+|.++ |.++++++... .+..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecC--------------------------CCCcc-----------
Confidence 789999999 999999999999988 46888777532 01101
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCeEEecCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~IVSnaS 239 (453)
.+....|. ++|+||.|++.-.+++++++..++|+ +||+.++ .++++|..+||+|++..+. ...++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 11122354 68999999999999999999989998 5776664 6668999999999765432 2267999999
Q ss_pred cchhhhhhHHHHHhhhcCeeEEEEEeeecccc---chh-hhccccccchhhhhhhhccccCCCc-h---hHHHHhhcccc
Q 012940 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTG---DQR-LLDASHRDLRRARAAALNIVPTSTG-A---AKAVSLVMPQL 311 (453)
Q Consensus 240 CTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg---~Q~-llD~~~~d~rr~Raaa~NIIPt~tG-a---akav~kVlPeL 311 (453)
|.++++...|+||+++-.|++...++++++|| +.+ ..+..+.+ + --+..|++|+.-| . ..|+.+.|-.+
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAHKHLPEMQAHAGLA 192 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCCcchHHHHHHhccc
Confidence 99999999999999976666655788899864 432 22222100 1 1256799998755 3 34555555433
Q ss_pred CCceeEEEEEeeecceeEEEEEEEE---ccCCCCHHHHHHHHHHccc
Q 012940 312 KGKLNGIALRVPTPNVSVVDLVVNV---EKKGITAEDVNAAFRKAAE 355 (453)
Q Consensus 312 ~gKisgtavRVPv~~gs~vdltv~l---ek~~vt~eeI~~al~~aa~ 355 (453)
-++.-+..-+|+.+|++..+++++ +++ ++.+|+.+++++.-+
T Consensus 193 -~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~-~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 193 -RRPIFTPSVGNFRQGMLVTVPLHLRLLPGG-PTAEDLHAALADHYA 237 (313)
T ss_pred -cCcEEEeeEccccCcEEEEEEEEecccCCC-CCHHHHHHHHHHHcC
Confidence 234445556899999999999997 777 899999999998643
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.75 E-value=2.9e-17 Score=165.84 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=160.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
.||+|.| .|-.|..++|+|..+ |+++++.+... + + | ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~-------------~-~--~----------------------~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD-------------R-R--K----------------------DAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc-------------c-c--c----------------------CcC
Confidence 4899999 999999999999987 67998887532 0 0 0 001
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCc-cCCeEEecCCcc
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~~-~~~~IVSnaSCT 241 (453)
+++++ ++ ++|+||.|++...+++++++..++|+ +||+.++ .+++.|..+||+|++..+. ...++|+||+|.
T Consensus 42 ~~~~~-~~--~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-LN--AADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-hc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11222 11 68999999999999999999888998 5776653 6668999999998775433 226899999999
Q ss_pred hhhhhhHHHHHhhhcCeeEEEEEeeecccc---chh-hhccccccchhhhhhhhccccCCCc----hhHHHHhhccccCC
Q 012940 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG---DQR-LLDASHRDLRRARAAALNIVPTSTG----AAKAVSLVMPQLKG 313 (453)
Q Consensus 242 Tn~Lapvlk~L~d~fGI~~~~mTTiha~Tg---~Q~-llD~~~~d~rr~Raaa~NIIPt~tG----aakav~kVlPeL~g 313 (453)
+++++..|+||+++..|++...+++++.|| ..+ ..+..++..++. ....|+-|..-+ ...|+...+-.+ -
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~ 194 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-L 194 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence 999999999999987777766799999987 333 223332111111 124566676533 334455544322 3
Q ss_pred ceeEEEEEeeecceeEEEEEEEE---ccCCCCHHHHHHHHHHcc
Q 012940 314 KLNGIALRVPTPNVSVVDLVVNV---EKKGITAEDVNAAFRKAA 354 (453)
Q Consensus 314 KisgtavRVPv~~gs~vdltv~l---ek~~vt~eeI~~al~~aa 354 (453)
++.-+..-+|...|=+..+++.+ +++ ++.+|+.++++++-
T Consensus 195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~-~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 195 PPIFTPAVGNFAQGMAVTIPLHLQTLASK-VSPADIHAALADYY 237 (310)
T ss_pred CEEEEeEEccccCcEEEEEEEEeccCCCC-CCHHHHHHHHHHHH
Confidence 57888899999999999999999 776 89999999999853
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.49 E-value=5.5e-14 Score=141.73 Aligned_cols=156 Identities=22% Similarity=0.140 Sum_probs=112.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
++||||+|+|.||+.++..+... +.++++++-+. +++.- .+++-..+|. . ..++|.+-.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~--gla~A~~~Gi---~--------~~~~~ie~LL---- 63 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESD--GLARARRLGV---A--------TSAEGIDGLL---- 63 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhH--HHHHHHHcCC---C--------cccCCHHHHH----
Confidence 68999999999999988877653 56999999876 33211 0110011221 0 0011111011
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCc-cCCeEEecCCcchhh
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTTNC 244 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~-~~~~IVSnaSCTTn~ 244 (453)
++.+|. ++|+||+|||.....+.+++++++|+ .||+..+.- ..|++||+||.+.+.. ...++|+||+|+|+.
T Consensus 64 --~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~-~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 64 --AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA-IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred --hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc-cCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 122454 69999999999999999999999997 566554432 6799999999997753 225899999999999
Q ss_pred hhhHHHHHhhhcCeeEEEEEeeeccc
Q 012940 245 LAPFVKVMDEELGIVKGAMTTTHSYT 270 (453)
Q Consensus 245 Lapvlk~L~d~fGI~~~~mTTiha~T 270 (453)
++..|+++++. ++.++. +||++.|
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhc
Confidence 99999998765 888887 9999998
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.30 E-value=9.6e-12 Score=124.82 Aligned_cols=161 Identities=22% Similarity=0.178 Sum_probs=113.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhh--hhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~--~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
++||||+|.|+||+..+..+.+. +++++++|-+. +++. ++..-+ +| -...+++.+..+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~la~A~~----~G-----------i~~~~~~~e~ll-- 60 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDGLARARE----LG-----------VKTSAEGVDGLL-- 60 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHHHHHHHH----CC-----------CCEEECCHHHHh--
Confidence 47999999999999887766653 46899999876 3322 111101 11 111122211111
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCc-cCCeEEecCCcch
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTT 242 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~-~~~~IVSnaSCTT 242 (453)
.+ .++|+|++||+.....+.+.+++++|. .||.-.|.. ..|++||+||.+.... ...++|++++|.|
T Consensus 61 -~~--------~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~at 128 (285)
T TIGR03215 61 -AN--------PDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQAT 128 (285)
T ss_pred -cC--------CCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHH
Confidence 11 268999999999999999999999996 444444544 5799999999887643 2268999999999
Q ss_pred hhhhhHHHHHhhhcCeeEEEEEeeecccc-c--hhhhcccc
Q 012940 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTG-D--QRLLDASH 280 (453)
Q Consensus 243 n~Lapvlk~L~d~fGI~~~~mTTiha~Tg-~--Q~llD~~~ 280 (453)
+.++..++.+++...+ ..++||++.|+ . ..-+|.+.
T Consensus 129 ip~~~al~r~~d~~~~--~iv~ti~s~S~g~g~r~~idel~ 167 (285)
T TIGR03215 129 IPIVAAISRVAPVHYA--EIVASIASRSAGPGTRANIDEFT 167 (285)
T ss_pred HHHHHHHHHhhccccE--EEEEEEEeeccCCCchhHHHHHH
Confidence 9999999999987755 56788999986 3 33455543
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.15 E-value=2.9e-09 Score=108.85 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=153.6
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC--CChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEE
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v 161 (453)
|++||+|+| .|-.|-+++|+|..+ |++|+..+... .+.. + ...|-.+.+-+ .+.+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~-~------~~~~p~l~g~~-------------~l~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKP-V------SDVHPNLRGLV-------------DLPF 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCc-h------HHhCccccccc-------------cccc
Confidence 568999999 899999999999988 56896665432 1110 0 01111111110 0111
Q ss_pred EeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC----CCC-----------CC----CeEE---
Q 012940 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGA-----------DI----PTYV--- 219 (453)
Q Consensus 162 ~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps----~d~-----------dv----PtvV--- 219 (453)
+..+++.+ ...++|+||.|+..-.+++.++..++.|++ ||+.+. +|. .. .--|
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 12334444 223689999999999999999999999985 675443 200 00 1233
Q ss_pred eccCccccCccCCeEEecCCcchhhhhhHHHHHhhh--cCeeE-EEEEeeeccccchhhhcc-ccccchhhhhhhhcccc
Q 012940 220 VGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE--LGIVK-GAMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVP 295 (453)
Q Consensus 220 ~gVN~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~--fGI~~-~~mTTiha~Tg~Q~llD~-~~~d~rr~Raaa~NIIP 295 (453)
+|.|.+.+.. .+.|+||.|-.++....|+||-+. ..+.. .++-..-.+||..+-... .+- -....|+.|
T Consensus 134 pEl~~e~i~~--A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~-----~e~~~~~~~ 206 (349)
T COG0002 134 PELHREKIRG--AKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHF-----PEVNDSLRP 206 (349)
T ss_pred cccCHHHHhc--CCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccc-----hhhcccccc
Confidence 4566666654 479999999999999999999875 22344 244444555655432211 111 113448888
Q ss_pred CC---CchhHHHHhhccccC---CceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccC
Q 012940 296 TS---TGAAKAVSLVMPQLK---GKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG 356 (453)
Q Consensus 296 t~---tGaakav~kVlPeL~---gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~ 356 (453)
.. +....|+..-+..|. .++.-|..-+|...|=+..+++.+++. +|.+||.+++++.=++
T Consensus 207 Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~-~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 207 YGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDL-VTLEELHAAYEEFYAG 272 (349)
T ss_pred ccccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCC-CCHHHHHHHHHHHhCC
Confidence 64 334445555555554 346778888999999999999999998 8999999999886443
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.97 E-value=2.3e-10 Score=100.20 Aligned_cols=113 Identities=26% Similarity=0.292 Sum_probs=77.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCC--hhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~--~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
||||+| +|.+|+.++|+|.++ |+++++.+-.... -+.+...+ +.+.+ ...+.+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~------~~~~~-------------~~~~~~~~- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVF------PHPKG-------------FEDLSVED- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTT------GGGTT-------------TEEEBEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhc------ccccc-------------ccceeEee-
Confidence 799999 999999999999986 6799888765411 11121211 11110 11233322
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccC
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYD 228 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~~ 228 (453)
.+++.+ .++|+||.|++...+++.+++.++.|+ +||+..+ .+++.|+++|+||.+.+.
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 233333 279999999999999999999999999 6776554 566899999999998764
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=98.95 E-value=2.1e-09 Score=101.09 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=77.2
Q ss_pred HHHHhhh-cCeeEEEEEeeeccccchh-hhccc------------cccchhhhhhhhccccCCCc-------hhHHHH--
Q 012940 249 VKVMDEE-LGIVKGAMTTTHSYTGDQR-LLDAS------------HRDLRRARAAALNIVPTSTG-------AAKAVS-- 305 (453)
Q Consensus 249 lk~L~d~-fGI~~~~mTTiha~Tg~Q~-llD~~------------~~d~rr~Raaa~NIIPt~tG-------aakav~-- 305 (453)
|+||+++ ++++++.++|+|++||+++ .++.. .++.....++++|++|+.-+ ..+++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 9999999999999999865 22221 12234567899999998744 333332
Q ss_pred -----hhccccCCceeEEEEEeeecceeEEEEEEEEc-cCCCCHHHHHHHHHHc
Q 012940 306 -----LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVE-KKGITAEDVNAAFRKA 353 (453)
Q Consensus 306 -----kVlPeL~gKisgtavRVPv~~gs~vdltv~le-k~~vt~eeI~~al~~a 353 (453)
+++.. ..+++.+|+|||+++||+..++++++ ++ .+.+++.++|.+.
T Consensus 81 ~~~~~~~l~~-~~~v~~t~~~vPv~rG~~~ti~v~~~~~~-~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGF-PPRVSFTCVRVPVFRGHLATIYVELKETP-VDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTE-TTEEEEEEEEESSSSEEEEEEEEEESSSH-HHHHHHHHHHHTS
T ss_pred hccccceeec-cccccccEEEEeeeeeEceeEEEEecCCH-HHHHHHHHHHhCC
Confidence 23322 23799999999999999999999995 76 6888888888765
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.18 E-value=3.2e-06 Score=73.56 Aligned_cols=113 Identities=27% Similarity=0.314 Sum_probs=68.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
||||.| .|++|+.+++.+.+. +.++++++-.. + ......++ ..+++ + .+ + +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~-~-~~~~~~~~--~~~~~------------~--~~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAAS-A-RSAGKRVS--EAGPH------------L--KG--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEec-h-hhcCcCHH--HHCcc------------c--cc--c-cc--cc
Confidence 689999 699999999998865 45899988432 1 00000000 00100 0 00 0 00 11
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHH---HHHHcCCCEEEEeCCC---CCCCCCeEEeccCcccc
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDY 227 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~---~hl~aGAkkVIISaps---~d~dvPtvV~gVN~~~~ 227 (453)
.+...|...+.|+||.|++.....+... +.++.|+ +||+..+ .+++.|.++|++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2223344457899999999887776433 3345554 7885543 55678999999998755
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.99 E-value=5.4e-06 Score=82.77 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=88.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
|.+||||+|+|.||+.+.+.|.......+++++|++. +++....+. +. ..+.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~------------------------~~-~~~~-- 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALA------------------------GR-VALL-- 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhh------------------------cc-Cccc--
Confidence 6789999999999999999887543345899999876 221111111 00 1121
Q ss_pred CCCCCC-CccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC-CCCCCCeEEeccCccccC---ccCCeEEecCC
Q 012940 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNEKDYD---HEVANIVSNAS 239 (453)
Q Consensus 165 ~dp~~l-~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps-~d~dvPtvV~gVN~~~~~---~~~~~IVSnaS 239 (453)
.+++++ .| ..|+|+||+|...-++++++.|++|+.-+|+|-.. .|++ ...+..+ ....+|. -||
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~-------~~~~l~~~A~~~g~~i~-ipS 121 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDA-------LRARLIAAAEAGGARIR-VPA 121 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHH-------HHHHHHHHHHhCCCEEE-EeC
Confidence 345553 45 58999999999999999999999999877777443 3211 1111111 1112322 234
Q ss_pred cchhhhhhHHHHHhhhcCeeEEEEEeeecccc
Q 012940 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (453)
Q Consensus 240 CTTn~Lapvlk~L~d~fGI~~~~mTTiha~Tg 271 (453)
-..-.|-- |+.. ...|+.++.+||.-...+
T Consensus 122 GAigGlD~-l~aa-~~~~~~~v~~~t~K~P~s 151 (267)
T PRK13301 122 GAIAGLDY-LQAV-AGRDDAEVVYESRKPVAA 151 (267)
T ss_pred hHHHhHHH-HHHh-hccCceEEEEEEecChhH
Confidence 33333322 2222 346899999988855543
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.78 E-value=0.0014 Score=67.44 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=60.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
++||||+|+|+|||.+++++..+ +++++|+|-+..+++.+.. . +.++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~-------------~---------------~~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT-------------E---------------TPVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh-------------c---------------CCccccC
Confidence 58999999999999999998765 5699999977532221100 0 0111111
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
+.+. +. .++|+|+-||+.....+.+...+++|. .||-|
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 1111 11 369999999999999999999999996 45555
No 49
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.001 Score=65.92 Aligned_cols=284 Identities=20% Similarity=0.241 Sum_probs=150.4
Q ss_pred ccccccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC--CChhhhhhhhccccceeecCceEEEecCCeEEEC
Q 012940 79 VKKETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (453)
Q Consensus 79 ~~~~~~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~ 155 (453)
.++..+..+|||..| -|--|++++|++..+ |.+|+..+... .+-+ |+ +-+ +.++.+ + .+..
T Consensus 12 ~~~~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqk-----l~-~yt----k~eiqy-~--~lst- 75 (340)
T KOG4354|consen 12 SSVKPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQK-----LE-VYT----KLEIQY-A--DLST- 75 (340)
T ss_pred cccccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCc-----cc-Ccc----hhheee-c--ccch-
Confidence 345567779999999 799999999998876 67998777542 1100 00 000 011111 0 0111
Q ss_pred CeEEEEEeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCC--eEE---eccCc-cccCc
Q 012940 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYV---VGVNE-KDYDH 229 (453)
Q Consensus 156 Gk~I~v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvP--tvV---~gVN~-~~~~~ 229 (453)
.|...+. ...-+|..+.+.+--+-+.+...-..+--|-+||.-...---.| -.+ +++|+ +++..
T Consensus 76 ---------~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n 145 (340)
T KOG4354|consen 76 ---------VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN 145 (340)
T ss_pred ---------hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh
Confidence 1111110 01135655666655444455444444444666775443100123 344 46774 35654
Q ss_pred cCCeEEecCCcchhh----hhhHHHHHhhhcCeeEEEEEeeeccccchhhhccccccchhhhhhhhccccCCCchhHHHH
Q 012940 230 EVANIVSNASCTTNC----LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVS 305 (453)
Q Consensus 230 ~~~~IVSnaSCTTn~----Lapvlk~L~d~fGI~~~~mTTiha~Tg~Q~llD~~~~d~rr~Raaa~NIIPt~tGaakav~ 305 (453)
.+.|+||.|-.+. |.|++|.+.-+- + +-.+-.|||+.. .+. ..-...-++.|+||..-.--..++
T Consensus 146 --a~~iaNPGCYaTgsQl~l~Pllk~i~g~p---~--ifgvSGySGAGt---kps-pkNd~~~l~nnlipY~ltdHiHer 214 (340)
T KOG4354|consen 146 --ARLIANPGCYATGSQLPLVPLLKAILGKP---E--IFGVSGYSGAGT---KPS-PKNDYSELANNLIPYGLTDHIHER 214 (340)
T ss_pred --hhhccCCCcccccCcccchHHHHHhcCCc---c--eeeeccccCCCC---CCC-CccCHHHHhcCCccccccccchhH
Confidence 4789999996554 567776654322 1 222335666542 111 111234589999997522112233
Q ss_pred hhccccCCceeEEEEEeeecceeEEEEEEEEccCCCCHHHHHHHHHHcccC-CCCcceeecccCeEeecCCCCCcceEEe
Q 012940 306 LVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEG-PLKGILAVCDVPLVSVDFRCSDVSSTID 384 (453)
Q Consensus 306 kVlPeL~gKisgtavRVPv~~gs~vdltv~lek~~vt~eeI~~al~~aa~~-~lkgil~~~~~~~VS~Df~~~~~S~i~D 384 (453)
.|--.++-.+.-|.--.|-+.|-...++|.+++. ++.||+++.++..-|+ +|--++ .|-|+| -|..|.-|-.+ -
T Consensus 215 EIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkks-v~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~-g 289 (340)
T KOG4354|consen 215 EISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKS-VRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM-G 289 (340)
T ss_pred hHHHhhCCceeechhHHHHhhhceEEEEEeecCc-ccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcceeEe-c
Confidence 3322333334444444566677777888889987 8999999999876554 343332 234554 45666554332 1
Q ss_pred CCCCceecCCeEEEEEEecCC
Q 012940 385 SSLTMVMGDDMVKVVAWYDNE 405 (453)
Q Consensus 385 ~~~t~v~~~~~vKl~~WYDNE 405 (453)
....-.-++-+-|++=-||-
T Consensus 290 -gF~~~~~g~Ravii~tIDNL 309 (340)
T KOG4354|consen 290 -GFPDRIPGDRAVIISTIDNL 309 (340)
T ss_pred -cccCCCCCceEEEEEehhhh
Confidence 11111123356677777874
No 50
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=97.60 E-value=2.1e-05 Score=63.83 Aligned_cols=23 Identities=43% Similarity=1.060 Sum_probs=19.8
Q ss_pred CCChhhhhhccCCCCcccccccC
Q 012940 431 SGDPLEDFCQTNPADEECKVYEA 453 (453)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~ 453 (453)
..+|||.||..||+++||||||+
T Consensus 49 ~~~~lE~yC~~nPea~EcrvYdd 71 (71)
T PF02672_consen 49 DKTPLELYCDENPEADECRVYDD 71 (71)
T ss_dssp -TTCHHHHHHHSTTSTTTTTS--
T ss_pred CCCHHHHHHHHCCCcHHhhhccC
Confidence 78999999999999999999985
No 51
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.58 E-value=0.00016 Score=71.93 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=59.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCC-ChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||||.|+|+||+.+++.+... +++++++|-+.. ..+.... .. +. .+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~-------------~~----~~-------~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRR-------------AL----GE-------AVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhh-------------hh----cc-------CCeee--C
Confidence 6999999999999999998764 458888775321 1110000 00 00 12232 2
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
+.+.+. ..+|+|+|||+.....+.+...+++|. .|++-.+
T Consensus 54 d~~~l~---~~~DvVve~t~~~~~~e~~~~aL~aGk-~Vvi~s~ 93 (265)
T PRK13303 54 SVDALP---QRPDLVVECAGHAALKEHVVPILKAGI-DCAVISV 93 (265)
T ss_pred CHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCC-CEEEeCh
Confidence 344442 368999999999888899999999996 4555333
No 52
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.38 E-value=0.0005 Score=70.82 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=79.2
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEcCCC---------ChhhhhhhhccccceeecCceEEEec
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSG---------GVKNASHLLKYDSLLGTFKADVKIVD 148 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~-------~~~ieiVaInd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~ 148 (453)
|.+||||.|+|.||+.+++.+.++. ..+++||+|-|.- +++.+ ..+-..+|.+.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~------- 70 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLA------- 70 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcc-------
Confidence 6799999999999999999987642 1258999998741 11111 11101011000
Q ss_pred CCeEEECCeEEEEEeCCCCCCCCccccCccEEEcCCCCCCC-----hhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccC
Q 012940 149 NETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVD-----GPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVN 223 (453)
Q Consensus 149 ~~~l~v~Gk~I~v~~~~dp~~l~W~~~gvDiVie~TG~f~s-----~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN 223 (453)
.+.+.. ...+++++ ..+.++|+|+|||+.... .+....++++|. -||++. + .|+-. +
T Consensus 71 ----~~~~~~----~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaN-K---~pla~---~ 132 (341)
T PRK06270 71 ----DYPEGG----GEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSN-K---GPLAL---A 132 (341)
T ss_pred ----cCcccc----ccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCC-c---HHHHh---h
Confidence 000000 00122221 122368999999986543 577788999996 355532 1 12111 1
Q ss_pred ccccCc--cCCeEEecCCcchhhhhhHHHHHhhhcCeeEEEEEee
Q 012940 224 EKDYDH--EVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266 (453)
Q Consensus 224 ~~~~~~--~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTi 266 (453)
.+.+.. ++.++.=.-..+...-.|+++.|.+. +....+..+
T Consensus 133 ~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~--l~g~~I~~I 175 (341)
T PRK06270 133 YKELKELAKKNGVRFRYEATVGGAMPIINLAKET--LAGNDIKSI 175 (341)
T ss_pred HHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhh--cccCceEEE
Confidence 122211 11111111245566678999999875 333344443
No 53
>PLN00204 CP12 gene family protein; Provisional
Probab=97.27 E-value=9.6e-05 Score=65.61 Aligned_cols=24 Identities=46% Similarity=1.157 Sum_probs=22.2
Q ss_pred CCCChhhhhhccCCCCcccccccC
Q 012940 430 GSGDPLEDFCQTNPADEECKVYEA 453 (453)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~ 453 (453)
...+|||.||++||+++|||+||+
T Consensus 103 ~~kt~lE~YCdeNPeA~ECRvYDd 126 (126)
T PLN00204 103 KGSDPLEEYCKDNPETDECRTYED 126 (126)
T ss_pred CCCChHHHHHHHCCCchhhhccCC
Confidence 368999999999999999999985
No 54
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.27 E-value=0.00061 Score=66.79 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=65.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
++|||+|+|+||..+++.+.+-. -+++++++-|. +.+..-++.+ + +.++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCCcc-----cc
Confidence 58999999999999999886432 35899999886 3443333332 1 111111 11
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps 210 (453)
.+++- ..+|+++||++.---++++++.|++|..-+|+|-..
T Consensus 54 ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 54 IDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred HHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 22221 368999999999888999999999999877777654
No 55
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.23 E-value=0.00049 Score=68.50 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=61.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||+|+| +|++|+.+++.+.+. +++++|++-|..+++.. .+|. +.+.+. .. .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~~--~~~~~~----~~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTDA--GELAGI----GK-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCCH--HHhcCc----Cc-----CC--ceee--C
Confidence 7999999 899999999998765 56999999874222111 0010 000000 00 01 2232 2
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
+++.+ ...+|+|+|+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34344 13589999999998888999999999964 555
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.21 E-value=0.00082 Score=67.18 Aligned_cols=91 Identities=25% Similarity=0.239 Sum_probs=60.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
++||||+|+|+||+.+++.|... .+++++++|-+. +++...-+.+ .+| .. ..+ .
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g-----------------~~--~~~--~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLR-----------------RP--PPV--V 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcC-----------------CC--ccc--C
Confidence 58999999999999999988753 245899999876 3332211111 000 00 000 2
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
+++++-. ++|+|++|++...-.+.+...+++|. .|++
T Consensus 60 ~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 60 PLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred CHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 2333422 47999999999888899999999995 3444
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.13 E-value=0.00074 Score=59.67 Aligned_cols=95 Identities=21% Similarity=0.206 Sum_probs=55.1
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||+|+|+ ||+||.+++.+.++ ++++|+++-+....++. .-|. |.+.+. ....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~----g~d~--g~~~~~-----------~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKV----GKDV--GELAGI-----------GPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTT----TSBC--HHHCTS-----------ST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccc----cchh--hhhhCc-----------CCcccccc--h
Confidence 69999997 99999999999986 46999999876221110 0011 111100 00112221 2
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
+.+.+- ..+|++||.|-.....+.++..++.|.. +|+
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~-~Vi 96 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP-LVI 96 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E-EEE
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC-EEE
Confidence 333221 1389999999776677777888888874 344
No 58
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.11 E-value=0.00052 Score=72.76 Aligned_cols=95 Identities=25% Similarity=0.383 Sum_probs=57.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~-------~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~ 158 (453)
++||||.|+|.||+.++++|.++. ..+++|++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~-~~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD-RGV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc-cCC-------------C--------Ccc--
Confidence 689999999999999999986542 125888888764 11110 000 0 000
Q ss_pred EEEEeCCCCCCCCccccCccEEEcCCCCC-CChhhHHHHHHcCCCEEEEeCC
Q 012940 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 159 I~v~~~~dp~~l~W~~~gvDiVie~TG~f-~s~e~a~~hl~aGAkkVIISap 209 (453)
..++ .+++++ ..+.++|+|+||||.. ...++...++++|. .||..++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 1111 122222 1223689999999763 44677888999994 5544444
No 59
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.03 E-value=0.0018 Score=64.37 Aligned_cols=90 Identities=23% Similarity=0.285 Sum_probs=60.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
|||||+|+|+||+.+++.+.... ..+++++|-|. +++....+.+ . ++. .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~------------~--------~~~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS------------K--------TGA---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH------------h--------cCC---eeE--CC
Confidence 69999999999999999987542 25899988876 3332222211 0 010 111 23
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
.+++. .++|+|++|++...-.+.+...+++|.. |++.
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~ 91 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIM 91 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEE
Confidence 33333 1689999999988888999999999964 5553
No 60
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.99 E-value=0.0012 Score=65.27 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=57.4
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||+|+|+ |++|+.+++.+.+. ++++++++-|. +++..... ....+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~-~~~~~~~~------------------------~~~~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR-PGSPLVGQ------------------------GALGVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec-CCcccccc------------------------CCCCccc--cC
Confidence 79999995 99999999988764 45999998775 11111000 0001111 12
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
+.+.+- . ++|+|+++|......+.+...+++|.. ||+
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 333321 1 589999999877778999999999974 555
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.97 E-value=0.00099 Score=69.10 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=29.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~-------~~~ieiVaInd~ 121 (453)
|+++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 5789999999999999999997542 125788888654
No 62
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.91 E-value=0.0011 Score=68.31 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=57.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEcCCCC----hhh--hhhhhccccceeecCceEEEecCCe
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGG----VKN--ASHLLKYDSLLGTFKADVKIVDNET 151 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~-------~~~ieiVaInd~~~----~~~--~a~LlkyDS~~G~f~~~v~~~~~~~ 151 (453)
|++||+|.|||.||+.++++|.++. .-++.|++|.|... ++- +..+++|-..+|... .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------N 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh---------h
Confidence 6799999999999999999987631 11488999987411 000 011111110000000 0
Q ss_pred EEECCeEEEEEeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 152 ISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 152 l~v~Gk~I~v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
+.-+ ... ...+++++ +.+..+|+|||+|+.....+...+.++.|.
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~ 116 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK 116 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC
Confidence 0000 000 00012221 223468999999998777788888899997
No 63
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0028 Score=65.47 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=30.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCC-------CCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~-------~~ieiVaInd~ 121 (453)
|++||+|.|||.||+.++|+|.+++. -+++|++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 67999999999999999999987531 25788888764
No 64
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0062 Score=60.95 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=61.3
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
|+|||+|+| .||.||.++|++.+. +++++++.-+..+.. ..|.-.+++- -++-..+.+..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~----------~~g~d~ge~~-------g~~~~gv~v~~ 61 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSL----------SLGSDAGELA-------GLGLLGVPVTD 61 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCcc----------ccccchhhhc-------cccccCceeec
Confidence 458999999 699999999999875 568998876642211 0111111110 01111233321
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
++ .-.+.+.|++||-|-...+.+.+...++.|.+ .||
T Consensus 62 --~~---~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~-lVI 98 (266)
T COG0289 62 --DL---LLVKADADVLIDFTTPEATLENLEFALEHGKP-LVI 98 (266)
T ss_pred --ch---hhcccCCCEEEECCCchhhHHHHHHHHHcCCC-eEE
Confidence 11 12223689999999989999999999999964 445
No 65
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.57 E-value=0.0057 Score=63.01 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-----CCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK-----DSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~-----~~~ieiVaInd~ 121 (453)
|||+|.|||.||+.+++.|.++. ..+++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 48999999999999999997641 135899999875
No 66
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.48 E-value=0.0068 Score=51.75 Aligned_cols=94 Identities=32% Similarity=0.408 Sum_probs=65.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
|||||+|+|.+|+..++.+.... +++++++|-|+ +++...... +|.. . .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~-------~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI-------P-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS-------E-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc-------c-----------------ch--h
Confidence 69999999999999999888763 56999999987 443322211 1111 0 11 1
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps 210 (453)
+.+++- .+.++|+|+-||+.....+.+...+++|. .|++--|-
T Consensus 53 ~~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 122221 22369999999999999999999999996 67776653
No 67
>PRK11579 putative oxidoreductase; Provisional
Probab=96.41 E-value=0.012 Score=60.26 Aligned_cols=92 Identities=24% Similarity=0.428 Sum_probs=61.4
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 86 ~ikVaInGfGrIGR~-vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
++||||+|+|.||+. .++++... ++++|++|-|. +.+.++- +| + + +.++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~~--~~-------~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVKA--DW-------P--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHHh--hC-------C--------------C--Ccee--
Confidence 589999999999985 46766543 46999999886 3332210 00 0 0 0111
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
.+.+++ ..+.++|+|+-||+.....+.+..++++| |.|++--|
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKP 96 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCC
Confidence 122222 11236999999999999999999999999 56777555
No 68
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.39 E-value=0.013 Score=57.01 Aligned_cols=73 Identities=26% Similarity=0.295 Sum_probs=53.1
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-ccCccCCeEEecCCcchhhhhhHHHHHhh
Q 012940 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLAPFVKVMDE 254 (453)
Q Consensus 176 gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~-~~~~~~~~IVSnaSCTTn~Lapvlk~L~d 254 (453)
++|+|||+|......+.+.+..++|.+.+-++-.. --|-+||-||-+ +++....+.| .|-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idltpaa---igp~vvp~~n~~eh~~a~nvnmv---tcggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPAA---IGPYVVPVVNLEEHVDALNVNMV---TCGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecchhc---cCCeeccccchHHhcCCCCcceE---eecCcccchhhhhhhh
Confidence 68999999999999999999999999654444222 248999999987 4554335677 5666666666655443
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.68 E-value=0.0013 Score=56.75 Aligned_cols=87 Identities=28% Similarity=0.349 Sum_probs=48.4
Q ss_pred cCChhHHHHHHHHHhCCCC-CceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCCCC-C
Q 012940 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (453)
Q Consensus 93 GfGrIGR~vlr~l~~r~~~-~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp~~-l 170 (453)
|||.||+.+++.|.++... +++|++|-+.. . ++..+. .. . .++. .+. .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~----~~~~~~-----~~--~--~~~~--------~~~--~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--M----LISKDW-----AA--S--FPDE--------AFT--TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--E----EEETTH-----HH--H--HTHS--------CEE--SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--c----hhhhhh-----hh--h--cccc--------ccc--CCHHHHh
Confidence 8999999999999876321 58999997652 0 010000 00 0 0000 000 11111 1
Q ss_pred CccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 171 ~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.| .++|+|||||+.....+.....++.|. =||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 158999999998888888889999997 34443
No 70
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.63 E-value=0.11 Score=50.75 Aligned_cols=134 Identities=26% Similarity=0.333 Sum_probs=72.3
Q ss_pred ccceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCC----Chh--hhhhhhccccceeecCceEEEecCCeEEECC
Q 012940 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG----GVK--NASHLLKYDSLLGTFKADVKIVDNETISVDG 156 (453)
Q Consensus 83 ~~m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~----~~~--~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G 156 (453)
+.+.+||+|-|||.||+.+++.|.+. ...||+|.|.. +++ .+..|+++-..+|.+.. +.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~-----------~~~ 93 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG-----------FPG 93 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc-----------CCC
Confidence 34567999999999999999999875 37999999862 111 12233332222222110 100
Q ss_pred eEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEE
Q 012940 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235 (453)
Q Consensus 157 k~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IV 235 (453)
. .. -+++.+ |.. ++||+++|+ +..++.+.+++ ++ | |+|+-+. +-|+= ++.- +.|. + +.|+
T Consensus 94 ~--~~---~~~~~i-~~~-~~Dvlip~a~~~~i~~~~~~~-l~--a-~~I~egA----N~~~t-~~a~-~~L~-~-rGi~ 154 (227)
T cd01076 94 A--ER---ITNEEL-LEL-DCDILIPAALENQITADNADR-IK--A-KIIVEAA----NGPTT-PEAD-EILH-E-RGVL 154 (227)
T ss_pred c--ee---cCCccc-eee-cccEEEecCccCccCHHHHhh-ce--e-eEEEeCC----CCCCC-HHHH-HHHH-H-CCCE
Confidence 0 01 122332 543 789999999 55666666553 22 4 2444222 12221 2211 1221 2 4677
Q ss_pred ecCCcchhhhhhHH
Q 012940 236 SNASCTTNCLAPFV 249 (453)
Q Consensus 236 SnaSCTTn~Lapvl 249 (453)
=.|....|+=..+.
T Consensus 155 ~~PD~~aNaGGvi~ 168 (227)
T cd01076 155 VVPDILANAGGVTV 168 (227)
T ss_pred EEChHHhcCcchhh
Confidence 67777777666554
No 71
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.55 E-value=0.037 Score=59.41 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=63.1
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhhccccce-eecCceEEEecCCeEEE
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISV 154 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~---------~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~l~v 154 (453)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++ .|++|--.+ |.+.+- .+. .
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~~~----~~~---~ 297 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRISEY----AEE---F 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchhhh----hhh---c
Confidence 3579999999999999999998763 799999883 1332 334332111 221110 000 0
Q ss_pred CCeEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 012940 155 DGKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 155 ~Gk~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVII 206 (453)
+.+. + +++. .|. ..+||.+.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 298 ~~~~--i----~~~~-i~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 298 GAEY--L----EGGS-PWS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred CCee--c----CCcc-ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 1111 1 2222 253 4799999998 778888999999888884 555
No 72
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.51 E-value=0.015 Score=61.24 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=65.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEec-CCeEEECCeEEEEEe
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVD-NETISVDGKLIKVVS 163 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~-~~~l~v~Gk~I~v~~ 163 (453)
.||+|.| +|-||++.|+++.... ..++|+++.--.+.+.++.+. +|...+--...+-...+ ...+ .+..++++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l--~~~~~~v~~ 78 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEAL--AAAGIEVLA 78 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhh--ccCCceEEE
Confidence 3899999 9999999999987543 369999997322454444433 23221100000000000 0001 111123333
Q ss_pred CCC-CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 164 NRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 164 ~~d-p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
..+ ..++- ...++|+|+.+.+.+...+..-.++++| |+|.+
T Consensus 79 G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 79 GEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred ChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 221 11110 1126999999999999998888999999 45555
No 73
>PLN02775 Probable dihydrodipicolinate reductase
Probab=95.50 E-value=0.037 Score=56.22 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=62.2
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 84 ~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
.+.+||+||| .||.||.+.+++.. ++|++|+.-|+.. + | ++-.+.+.|..+.+.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~-~------------~---------~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGP-A------------G---------VGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEecccc-c------------c---------ccccceeccceeeee
Confidence 3458999999 89999999999986 3599998766410 0 0 011123444456664
Q ss_pred eCCCCCCCC--ccccCcc-EEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 163 SNRDPLQLP--WAELGID-IVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 163 ~~~dp~~l~--W~~~gvD-iVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
...|++..- -+....| ++||=|-.....+.+...++.|..-||=|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGT 111 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGT 111 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 222222211 0111468 89998888778888888899998543333
No 74
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.10 E-value=0.074 Score=53.36 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=61.9
Q ss_pred ceeeEEEEcCChhHH-HHHHHHHhCCCCC-ceEEEEcCCCChhhhhhhh-ccccceeecCceEEEecCCeEEECCeEEEE
Q 012940 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSP-LDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (453)
Q Consensus 85 m~ikVaInGfGrIGR-~vlr~l~~r~~~~-ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v 161 (453)
+++||||+|.|.|++ ..+.++...+ + +++++|-|+ +++.+..+. +|.- . ..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~--~~~~~vav~d~-~~~~a~~~a~~~~~-------~----------------~~ 55 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALG--GGLELVAVVDR-DPERAEAFAEEFGI-------A----------------KA 55 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCC--CceEEEEEecC-CHHHHHHHHHHcCC-------C----------------cc
Confidence 578999999997775 5777777643 3 799999876 444332222 1111 0 01
Q ss_pred EeCCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 162 ~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
+ .+.+++- .+.++|+|+=||+...-.+.+.+++++|. .|++--|
T Consensus 56 ~--~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 56 Y--TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred c--CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1 1111110 11258999999999999999999999995 6777555
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=95.09 E-value=0.04 Score=56.70 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=60.1
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 86 ~ikVaInGfGrIGR~-vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
++||||+|+|+|++. .++.+... .+.++|++|-|. +.+.. ... +|. + +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~-~~~~~-~~~~~~~---------------------~--~~~~- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRR-HAKPE-EQAPIYS---------------------H--IHFT- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcC-ChhHH-HHHHhcC---------------------C--Cccc-
Confidence 379999999998854 46665433 246899999886 22211 111 111 0 0111
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
.+.+++ ..+.++|+|+-||+.....+.+.+.+++| |.|++--|
T Consensus 54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 112222 12236899999999999999999999999 56777555
No 76
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.92 E-value=0.23 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+.+||+|-|||.||+.+++.|.++. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4579999999999999999998763 689999987
No 77
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.71 E-value=0.12 Score=51.61 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=65.3
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhhccccceee-cCceEEEecCCeEEE
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGT-FKADVKIVDNETISV 154 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~---------~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~l~v 154 (453)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++.+..|++++..++. ...-. ..+
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-------~~~ 106 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYA-------KKY 106 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHh-------hcC
Confidence 3469999999999999999998763 799999884 233444444544432221 00000 001
Q ss_pred CCeEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEEeC
Q 012940 155 DGKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 155 ~Gk~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.|- +. -+++++ |. ..+||.+=|+ +.-++.+.+++..+.+|| +|+-+
T Consensus 107 ~~a--~~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~Eg 153 (254)
T cd05313 107 GTA--KY---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAEG 153 (254)
T ss_pred CCC--EE---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEEeC
Confidence 110 11 123332 53 4799888776 788898998887777884 56643
No 78
>PLN02700 homoserine dehydrogenase family protein
Probab=94.47 E-value=0.066 Score=56.40 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=29.3
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~------~~~ieiVaInd~ 121 (453)
|+++|+|.|+|.||+.+++.+..+. .-++.|++|.++
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 4689999999999999999987542 124778898774
No 79
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=94.27 E-value=0.12 Score=55.52 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEec-CCeEEECCe--EEEE
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVD-NETISVDGK--LIKV 161 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~-~~~l~v~Gk--~I~v 161 (453)
.||+|.| +|-||.+.|+++..+. +.|+|+++.--.+.+.++... +|...+--...+-...+ ...| .|. .+++
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l--~~~~~~~~v 134 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEAL--ADLDDKPEI 134 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhh--cCCCCCcEE
Confidence 5999999 8999999999998763 358999997655665555433 22221100000000000 0001 110 1233
Q ss_pred EeC-CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 162 VSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 162 ~~~-~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
+.. ....++- ....+|+|+.+.+.+......-.++++| |+|.+.+
T Consensus 135 l~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 135 IPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred EECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 321 1111110 1125899999999888887777899999 6665544
No 80
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.61 E-value=0.18 Score=52.80 Aligned_cols=93 Identities=27% Similarity=0.376 Sum_probs=52.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEec----CCeEEECCeEEE
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVD----NETISVDGKLIK 160 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~----~~~l~v~Gk~I~ 160 (453)
.++|||+.|.|-.|+-++...... +.|++|+|.|. .++.. -..||-.+|.-...++..+ .+.|. .| +|.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~-~~~~a--k~A~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-Ki~ 88 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDR-NLDAA--KRAYDRAGGPKIEAVEADDASKMADAIE-AG-KIA 88 (438)
T ss_pred CceEEEEecccccchHHHHHHhhc--CCceEEEEecc-cchHH--HHHHHHhcCCcccccccchhhHHHHHHh-cC-cEE
Confidence 358999999999999999777643 67999999997 22211 1124554444322222100 01111 11 233
Q ss_pred EEeCCCCCCCCccccCccEEEcCCCCC
Q 012940 161 VVSNRDPLQLPWAELGIDIVIEGTGVF 187 (453)
Q Consensus 161 v~~~~dp~~l~W~~~gvDiVie~TG~f 187 (453)
++. |.+.+ .....+|++||+||.-
T Consensus 89 vT~--D~~~i-~~~~~IdvIIdATG~p 112 (438)
T COG4091 89 VTD--DAELI-IANDLIDVIIDATGVP 112 (438)
T ss_pred Eec--chhhh-hcCCcceEEEEcCCCc
Confidence 421 22222 2233699999999963
No 81
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.52 E-value=0.13 Score=49.38 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=59.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
+.||+|.|.|.+|+.+++.+... ..+++++++=|. +++.. +.. ++|.++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~---------------------~~~--i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI---------------------GTK--IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc---------------------CCE--eCCeEE--cCHH
Confidence 36899999999999999864322 246899888654 22111 111 223222 1112
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
+..++ ..+.++|+|+.|++.....+.....+++|.+.|+.-.|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 13347999999999877667677788899865544344
No 82
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.33 E-value=0.11 Score=48.45 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
.+|||+|||+|||.+.+.+.... ++|++.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCC---ceeEEeccc
Confidence 58999999999999999998653 799888865
No 83
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=93.13 E-value=0.2 Score=50.76 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=56.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc-CCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN-DSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn-d~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
+||.||| .|++||.+.+++.. ++|++|+.. +. .. . .++...+.|..|.+...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~---~~------------------~--~~~~~~~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGG---EE------------------E--AENEAEVAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccc---cc------------------c--ccchhhhcccceeeecc
Confidence 5899999 89999999999875 359998752 11 00 0 11222234434555321
Q ss_pred ----CCCCCCCccccCcc-EEEcCCCCCCChhhHHHHHHcCCCE
Q 012940 165 ----RDPLQLPWAELGID-IVIEGTGVFVDGPGAGKHIQAGAKK 203 (453)
Q Consensus 165 ----~dp~~l~W~~~gvD-iVie~TG~f~s~e~a~~hl~aGAkk 203 (453)
.+++.+- +...| ++||-|-.....+.+...++.|..-
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ 96 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPF 96 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCE
Confidence 1222221 11267 9999888877888888888999753
No 84
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.07 E-value=0.19 Score=49.01 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=57.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhc--cccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Llk--yDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
|+|.|+|.|++|+.++|.|.++. -+++.|.+ +.+.+...++ +|. ..+..++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~--- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDV--- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHH---
Confidence 48999999999999999998874 47888865 3333322221 221 011112211112
Q ss_pred CCCCCCCccccCccEEEcCCCCCCCh-hhHHHHHH-cCCCEEEEeCCC
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDG-PGAGKHIQ-AGAKKVIITAPA 210 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~-e~a~~hl~-aGAkkVIISaps 210 (453)
+.+..- ..+|+++-+||..... -.+..+++ .|.+++|..+.+
T Consensus 59 --L~~agi--~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 59 --LEEAGI--DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred --HHhcCC--CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 222222 2579999999984433 33444545 688887776554
No 85
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.71 E-value=0.2 Score=48.26 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=62.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
.+|.|+|.|.+||.+|.--+.. ...+.|+++=|. +++. -|+.-++ +.|..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~~----------VG~~~~~---------------v~V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPDK----------VGTKIGD---------------VPVYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHHH----------hCcccCC---------------eeeechHH
Confidence 6999999999999988654432 235899888775 3321 2332222 33322222
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps 210 (453)
.+.+- ++.++|+++-|.++...-+-|....++|.|-++-=+|.
T Consensus 138 le~~v-~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKFV-KKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHHH-HhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 33221 23489999999998888888889999999864443443
No 86
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.51 E-value=0.6 Score=50.30 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=65.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhhccccceeecCceEEEecCCeEEECC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G 156 (453)
..||+|=|||.||+..++.|.+.. ..||+|.|. .+.+.+.+|++|-..+|..-.... + .+.|
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~--~----~~~g 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYA--E----KFPG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHH--h----cCCC
Confidence 469999999999999999998764 699998664 233445566655332322100000 0 1212
Q ss_pred eEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 012940 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 157 k~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVII 206 (453)
. +.. ++++ .|. ..+||.+=|+ +.-++.+.+.+..+.+|| +|+
T Consensus 299 a--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 299 S--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred C--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1 111 1222 264 5799888776 888999999988888985 455
No 87
>PLN02477 glutamate dehydrogenase
Probab=92.25 E-value=1 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
..||+|-|||.||+.+++.|.++. ..||+|.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 468999999999999999998764 799999986
No 88
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.24 E-value=0.55 Score=50.70 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=64.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCC---------Chhhhhhhhccccce-eecCceEEEecCCeEEEC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVKNASHLLKYDSLL-GTFKADVKIVDNETISVD 155 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~---------~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~l~v~ 155 (453)
..||+|-|||.||+..++.|.+.. ..||+|.|.. +.+.+.+|+++-..+ |+...-.+ . .-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~----~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAK----H---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhh----c---cC
Confidence 469999999999999999998764 6999999872 234444444332211 22111000 0 00
Q ss_pred CeEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 012940 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 156 Gk~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVII 206 (453)
|- +... +++ .|. ..+||.+=|+ +..++.+.|...++.||| +|+
T Consensus 307 ~a--~~~~---~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 307 TA--KYVP---GKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred Cc--EEeC---CcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 10 1111 222 375 5799988776 788899999888899995 455
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.10 E-value=0.25 Score=47.06 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 89 VaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
|+|.| +|.+|+.+++.|... .++|.++-...+.+ .+.-|+. .|-.+. .. .-.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~~~-~~~~l~~--------------~g~~vv------~~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPSSD-RAQQLQA--------------LGAEVV------EA-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSHHH-HHHHHHH--------------TTTEEE------ES--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccchh-hhhhhhc--------------ccceEe------ec-ccCCH
Confidence 78999 899999999999984 37888876542211 2122210 111110 00 01223
Q ss_pred CCCCccccCccEEEcCCCCCCCh------hhHHHHHHcCCCEEEEeCC
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDG------PGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~------e~a~~hl~aGAkkVIISap 209 (453)
+.+.=.-.|+|.||.+++..... ..+.++.++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33221123899999999966322 3345677899999887654
No 90
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.02 E-value=0.17 Score=58.20 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~------~~~ieiVaInd~ 121 (453)
+.++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 5799999999999999999987542 124778888653
No 91
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=91.92 E-value=0.13 Score=59.23 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=30.1
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEcCC
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~-------~~~ieiVaInd~ 121 (453)
.+.++|+|.|||.||+.++++|.++. .-++.|++|-+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 35799999999999999999987642 125788888654
No 92
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.80 E-value=0.4 Score=48.14 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4899999 9999999999998764 58887764
No 93
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.74 E-value=0.3 Score=44.29 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 89 VaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
|.|.| +|.||+.+++.|.++. .+|+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecC
Confidence 68999 8999999999999874 698888764
No 94
>PLN00016 RNA-binding protein; Provisional
Probab=91.56 E-value=0.55 Score=48.47 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.0
Q ss_pred cccccceeeEEEE----c-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 80 KKETVAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 80 ~~~~~m~ikVaIn----G-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+....|+.||.|. | +|.||+.+++.|.++. .+|+++...
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R~ 89 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTRG 89 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEecC
Confidence 3344555799999 8 9999999999998763 588777653
No 95
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.63 E-value=0.3 Score=49.85 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=26.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|||+|||.+++.+... +++|++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 45899999999999999988643 378877753
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.18 E-value=0.62 Score=46.35 Aligned_cols=109 Identities=19% Similarity=0.125 Sum_probs=59.5
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCC-------CC-CceEEEEcC-CCChhhhhhhhccccceeecCceEEEecCCeEEE
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRK-------DS-PLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISV 154 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~-------~~-~ieiVaInd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v 154 (453)
..+.||.|+|.|-+|-.+++.|.... .+ .++|+.+.. ..+...+-.-+=+++.-|+.+.++-. ..--.+
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~--~ri~~~ 86 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLV--NRLNQA 86 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHH--HHHHhc
Confidence 34679999999999999999997431 01 235554532 23333333222234456776655431 111112
Q ss_pred CCeEEEEEeCC-CCCCCCccccCccEEEcCCCCCCChhhHHHHH
Q 012940 155 DGKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (453)
Q Consensus 155 ~Gk~I~v~~~~-dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl 197 (453)
++..+....++ +++.+ + .+.|+||+|+..+.++...-...
T Consensus 87 ~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 87 MGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred cCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 24334433321 12222 2 26899999999888876554333
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.15 E-value=0.94 Score=45.92 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.5
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|++||+|+|.|.||..+...|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 5689999999999999999998753 46665653
No 98
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.01 E-value=0.36 Score=49.40 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=26.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|||+|||.+++.+... +++|++.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF---GMRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 35899999999999999998653 378877753
No 99
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.98 E-value=1.3 Score=38.83 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=54.9
Q ss_pred eEEEEc----CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 88 kVaInG----fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
+|||+| -+..|+.+++.|.++. ++|+.||.. ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 699999 4999999999998753 699999853 111 33322 22
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
.+.+++| ..+|+++-++......+......+.|++.|++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2233222 36899999999888888888888899999888654
No 100
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.82 E-value=0.61 Score=38.31 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll 131 (453)
||||.|+|.+|..+++.|.+.....-+|..+.+. +++.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998764233576656443 555555554
No 101
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.22 E-value=0.45 Score=48.70 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..+|||+|||+|||.+.+.+... .++|++.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEEC
Confidence 45899999999999999988643 37877664
No 102
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.21 E-value=1.2 Score=47.98 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=62.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhhccccc-eeecCceEEEecCCeEEEC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSL-LGTFKADVKIVDNETISVD 155 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~---------~~~~~~a~LlkyDS~-~G~f~~~v~~~~~~~l~v~ 155 (453)
..||+|-|||.||...++.|.+.. -.||+|.|. .+++.+.|+.+|... +++...- .+. .
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~----~~~---~- 296 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREY----AEK---Y- 296 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhh----Hhh---c-
Confidence 469999999999999999998764 699999983 134444333332211 1111100 000 0
Q ss_pred CeEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEEeC
Q 012940 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 156 Gk~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVIISa 208 (453)
| .... ++++ .|. ..+||.+=|+ +.-++.+.+.+....|+ ++|+.+
T Consensus 297 g--a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~-~~V~Eg 342 (444)
T PRK14031 297 G--CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV-IAVSEG 342 (444)
T ss_pred C--CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC-eEEECC
Confidence 1 1111 1222 364 4789988776 77789999988777788 345543
No 103
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.94 E-value=2.1 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.1
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r~ 109 (453)
|||+|.|. |.||..++-.|..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 59999997 999999998887663
No 104
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.82 E-value=1.3 Score=46.15 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=63.1
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
.+.+|+||+|.|+|+|.++++|.........||||.++ +.+...- | ---|+- + +.++ +++-
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~-f--Aq~~~~-~-~~k~-------y~sy------ 64 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKE-F--AQRHNI-P-NPKA-------YGSY------ 64 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHH-H--HHhcCC-C-CCcc-------ccCH------
Confidence 45689999999999999999998654346899999987 3332211 1 111111 1 1110 1110
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
.++. ++..||+|.-++..-...|.+-..+..| |.|++--|
T Consensus 65 -EeLa----kd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKP 104 (351)
T KOG2741|consen 65 -EELA----KDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKP 104 (351)
T ss_pred -HHHh----cCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEeccc
Confidence 0111 1226899999988887888888888877 45666444
No 105
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.75 E-value=1.8 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
+.||+|.|.|.||..+...+..+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 369999999999999988877553
No 106
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.68 E-value=1 Score=53.21 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCce------------EEEEcCCCChhhhhhhhc-cccceeecCceEEEecCCeE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD------------VVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNETI 152 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ie------------iVaInd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~l 152 (453)
+.||+|.|.|+||+..++.|... ++.+ +|+|.|+ +++.+..+.+ |. +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~~~--------------~--- 628 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL-YLKDAKETVEGIE--------------N--- 628 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC-CHHHHHHHHHhcC--------------C---
Confidence 34899999999999999999764 3344 6788876 3333333221 10 0
Q ss_pred EECCeEEEEEeCCCCCCCC-ccccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 012940 153 SVDGKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (453)
Q Consensus 153 ~v~Gk~I~v~~~~dp~~l~-W~~~gvDiVie~TG~f~s~e~a~~hl~aGAk 202 (453)
-+.+.+ .-.|++++. +- .++|+|+-|++.+...+-+...+++|.-
T Consensus 629 ---~~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 629 ---AEAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred ---CceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 001111 012333221 10 2599999999999999999999999973
No 107
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.60 E-value=1.7 Score=41.58 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
++|+|.|||++|+.+.+.|.+.. .+|++++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vvv~D 58 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLIVAD 58 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 58999999999999999998753 5887443
No 108
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.42 E-value=1.3 Score=43.28 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||.|.| +|.||+.+++.|.++. .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 588999 8999999999998763 57777654
No 109
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.29 E-value=0.4 Score=49.67 Aligned_cols=95 Identities=32% Similarity=0.469 Sum_probs=51.8
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r~~~~i-eiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
|.|.|.|.||+.+++.|.++. ++ +|+.. +. +.+.+..+.+. .. ...++ .+.+ ...++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~--~~---~~~~~------------~~~~-d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEK--LL---GDRVE------------AVQV-DVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----T---TTTEE------------EEE---TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhh--cc---cccee------------EEEE-ecCCH
Confidence 689999999999999998763 34 44444 33 34444333320 00 00111 0111 11232
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
+++.=--.+.|+||.|+|.|....-++..+++|+. .|+
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~--yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVH--YVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E--EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCC--eec
Confidence 22111112679999999999888889999999984 454
No 110
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.20 E-value=0.42 Score=42.92 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=26.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
++||+|+|.||+|..+.++|.... .+|++|-..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG---HEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT---SEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEeC
Confidence 479999999999999999998753 688888654
No 111
>PLN02928 oxidoreductase family protein
Probab=88.03 E-value=0.61 Score=48.45 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
..+|||+|||+|||.+++.|... .++|++.+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF---GVKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 35899999999999999998754 3798888653
No 112
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.90 E-value=5 Score=44.72 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-.|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G---~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG---FRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 3689999 8999999999998764 57776643
No 113
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.73 E-value=0.82 Score=47.25 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
..+|||.|+||||+.++|.+.. | .++|..-+..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~--F-gm~v~y~~~~ 178 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKG--F-GMKVLYYDRS 178 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhc--C-CCEEEEECCC
Confidence 4589999999999999999874 3 4787766643
No 114
>PRK07574 formate dehydrogenase; Provisional
Probab=87.60 E-value=0.66 Score=49.05 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=26.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+|||.++|.|... .++|.+.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 35899999999999999998754 378777764
No 115
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.57 E-value=0.68 Score=47.79 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=26.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|||+||+.+.+.+... .|+|++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af---gm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEECC
Confidence 45899999999999999888754 378877764
No 116
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.57 E-value=2 Score=41.61 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||.| .|++|..+++-+..|. -|++||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5999999 8999999998887774 59999965
No 117
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=87.43 E-value=0.69 Score=47.60 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.4
Q ss_pred eeeEEEEcCChhHHHHHHHHH-hCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~-~r~~~~ieiVaIn 119 (453)
..+|||+|||+|||.+.+.+. .. .++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 458999999999999999885 33 37776554
No 118
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.26 E-value=1.5 Score=47.11 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
-+|+|.|+|.||+.+++.+.... .+|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 48999999999999999887653 5766654
No 119
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.23 E-value=0.75 Score=46.99 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+||+.+.+.+... .++|++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 35899999999999999987643 378888874
No 120
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.19 E-value=4.9 Score=40.45 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|.|.+|+.+...+.... ++|+..+-
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~ 36 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFET 36 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 8999999999999998887543 67666653
No 121
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.09 E-value=0.82 Score=44.78 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=25.3
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|++||+|+|+|.||..+++.|.....+..++..++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 56799999999999999998876431113444444
No 122
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.02 E-value=0.76 Score=48.82 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+|||.+++.+... +++|++.+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f---Gm~V~~~d~ 182 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL---GMRVYFYDI 182 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECC
Confidence 45899999999999999998754 378877763
No 123
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.73 E-value=0.81 Score=47.17 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+||+.+.+.|... +++|++.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF---GMRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 45899999999999999998754 368877754
No 124
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.60 E-value=1.6 Score=46.38 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=58.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+||-|.|.|.||+.+++.|..+.+ .+|... |. +++.++... +++.+ .++ .+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iA-dR-s~~~~~~i~--~~~~~----~v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIA-DR-SKEKCARIA--ELIGG----KVE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEE-eC-CHHHHHHHH--hhccc----cce-----eEEecc--------cC
Confidence 589999999999999999887643 565444 33 334443332 12111 111 222221 11
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
.+.+.=--.+.|+||.|.+.|....-++..+++|..-|-+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 11110000145999999999999999999999998544343
No 125
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=86.31 E-value=1.3 Score=46.15 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
++||||+|. ++|+..++++.+.. +++++|||-|. +.+....+-+ .||. ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~erA~~~A~---~~gi--------------------~~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSERSRALAH---RLGV--------------------PLY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHHHHHHHH---HhCC--------------------Ccc--C
Confidence 479999999 67999999987642 26999999987 4433222211 1110 010 1
Q ss_pred CCCCCCccccCccEEEc--CCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 166 DPLQLPWAELGIDIVIE--GTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie--~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
+.+++. .+.++|+|.= ++......+.+.+++++| |.|++=
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~E 96 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQE 96 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEc
Confidence 222222 1124555544 224456789999999999 467773
No 126
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.58 E-value=1 Score=46.11 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|||+|+|.||+.+.+.|... .++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 5899999999999999998754 378777753
No 127
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.52 E-value=7.8 Score=39.31 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|.|.|.||..+++++.... ..++++..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~ 204 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG---FEVYVLNR 204 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEec
Confidence 7999999999999998876553 47777753
No 128
>PLN02306 hydroxypyruvate reductase
Probab=84.91 E-value=1.1 Score=47.36 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=25.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.-+|||+|||+||+.+++.+.. .+ .++|++.+.
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~-~f-Gm~V~~~d~ 197 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL 197 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cC-CCEEEEECC
Confidence 4589999999999999998741 22 378877753
No 129
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=84.76 E-value=0.64 Score=39.09 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=54.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe-CC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~-~~ 165 (453)
.||+|.|.|+.|+.++...+.. ..+.++++-|. +++. .+ -.++| +.|+. -.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv-~~~~---------------------~G--~~i~g--ipV~~~~~ 55 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV-DPEK---------------------IG--KEIGG--IPVYGSMD 55 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE-CTTT---------------------TT--SEETT--EEEESSHH
T ss_pred CeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc-CCCc---------------------cC--cEECC--EEeeccHH
Confidence 5899999999999888544432 23677666553 1110 01 11344 44541 11
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
+..+.- ++|+++-|.+.....+.+...+++|.|.+++=+
T Consensus 56 ~l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft 94 (96)
T PF02629_consen 56 ELEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFT 94 (96)
T ss_dssp HHHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEES
T ss_pred Hhhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 121111 389999999887777888889999998776533
No 130
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.75 E-value=1.2 Score=46.01 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.++|||+|+|+||+.+.+.|... .++|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~ 177 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF---GATITAYDA 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeC
Confidence 34899999999999999998754 368777753
No 131
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.73 E-value=1.4 Score=40.36 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|||++|+|+.|+.+.+.|.... ++|.+-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 69999999999999999998754 6877665
No 132
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.54 E-value=1.2 Score=47.05 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..+|||+|+|.||+.+.+.|... .++|++.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999998764 37877664
No 133
>PLN03139 formate dehydrogenase; Provisional
Probab=84.43 E-value=1.1 Score=47.36 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..+|||+|+|+||+.+++.|... +++|++.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEEEC
Confidence 45899999999999999998753 37876664
No 134
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.22 E-value=4 Score=40.82 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.3
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
+|.|+|.|.||...++++..+
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~ 167 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA 167 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc
Confidence 699999999999999877655
No 135
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.02 E-value=1.7 Score=44.07 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.-||+|.|+|++|+.+++.|.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 358999999999999999998653 47666654
No 136
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=83.82 E-value=1.3 Score=44.00 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|.+||||+|+|.+|+.+.+.|.... .+|++.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 5579999999999999999887643 5766654
No 137
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.74 E-value=2.5 Score=45.17 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
-+|+|.|+|.||+.+++.+.... .+|+++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 48999999999999999887653 466555
No 138
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.62 E-value=2.5 Score=43.58 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=51.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECC-eEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G-k~I~v~~~~d 166 (453)
+|+|.|.|.||-..+.++.... --+|+++ |. +.+-++..-++. +....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G--a~~Viv~-d~-~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG--ASVVIVV-DR-SPERLELAKEAG--------------GADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CceEEEe-CC-CHHHHHHHHHhC--------------CCeEeecCccccHH---HH
Confidence 7999999999988766655432 2466666 43 333332222211 11111211 11000 00
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
...+.. .+|+|+||||+|.....+.+-..++.|-.-+++.-+
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 001111 147999999999555455666666655533444433
No 139
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=82.82 E-value=4.5 Score=42.33 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.3
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 35899999 8999999999998764 57777754
No 140
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.65 E-value=2.1 Score=41.11 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|.| +|.+|..+.+.|.+.. .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4899997 9999999999998653 3555453
No 141
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.40 E-value=1.7 Score=43.94 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-||+|.|+|+||+.+++.|.... .+|..+|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998753 57776765
No 142
>PRK06223 malate dehydrogenase; Reviewed
Probab=82.39 E-value=6.1 Score=39.70 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+||+|.|.|.+|..++..+..+.. . +|+-+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEEE
Confidence 599999999999999988876531 1 655553
No 143
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=82.18 E-value=2.7 Score=43.38 Aligned_cols=140 Identities=25% Similarity=0.264 Sum_probs=72.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCC-CceEEEEcCC---CChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVNDS---GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~-~ieiVaInd~---~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
+||+|.|.|.||..++-.|..+... ++-++-|+.- +..-.+. |+. .+.+....+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~--------~~~-------------~~~~~~~~i~ 59 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLS--------HAA-------------APLGSDVKIT 59 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchh--------hcc-------------hhccCceEEe
Confidence 4899999999999999888665433 4555555521 1111111 111 1112222332
Q ss_pred eCCCCCCCCccccCccEEEcCCCCCCCh----------------hhHHHHHHcC--CCEEEEeCCCCCCCCCeEEeccCc
Q 012940 163 SNRDPLQLPWAELGIDIVIEGTGVFVDG----------------PGAGKHIQAG--AKKVIITAPAKGADIPTYVVGVNE 224 (453)
Q Consensus 163 ~~~dp~~l~W~~~gvDiVie~TG~f~s~----------------e~a~~hl~aG--AkkVIISaps~d~dvPtvV~gVN~ 224 (453)
...+-+++ .|.|+||-+.|.-+.. +.++.-.+.+ +.-+|+|+|. |+-+++.--+.
T Consensus 60 ~~~~y~~~----~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv---D~~ty~~~k~s 132 (313)
T COG0039 60 GDGDYEDL----KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV---DILTYIAMKFS 132 (313)
T ss_pred cCCChhhh----cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH---HHHHHHHHHhc
Confidence 21222333 2789999988765432 1112222233 2233457775 22222221111
Q ss_pred cccCccCCeEEecCCcchhhhhhHHHHHhhhcCee
Q 012940 225 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV 259 (453)
Q Consensus 225 ~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~ 259 (453)
.. +. .+|| .+-|+-=-+++-..|-++|++.
T Consensus 133 g~--p~-~rvi--g~gt~LDsaR~~~~lae~~~v~ 162 (313)
T COG0039 133 GF--PK-NRVI--GSGTVLDSARFRTFLAEKLGVS 162 (313)
T ss_pred CC--Cc-ccee--cccchHHHHHHHHHHHHHhCCC
Confidence 11 22 5666 3456666678888888999884
No 144
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.12 E-value=4 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.4
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..||+|+| +|.+|+.+.+.|.... .+|..++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 36899999 9999999999998653 4554444
No 145
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=81.99 E-value=2.6 Score=38.18 Aligned_cols=116 Identities=20% Similarity=0.298 Sum_probs=59.0
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEec-CCeEEECCeEEEEEeCC
Q 012940 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVD-NETISVDGKLIKVVSNR 165 (453)
Q Consensus 89 VaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~-~~~l~v~Gk~I~v~~~~ 165 (453)
|+|.| +|-||++.|+++...+ +.|+|+++.--.+.+.+..+. +|...+--...+-.+.. .+.+...+..++++...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence 68999 9999999999998764 469999997654555554444 22221100000000000 00000011122332211
Q ss_pred C-CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 166 D-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 166 d-p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
+ ..++- ...++|+|+.+.-.|...+-.-.++++| |++-+.
T Consensus 80 ~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 80 EGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp HHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred HHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 1 11110 1136889998887777777777888888 455553
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.96 E-value=3.4 Score=42.08 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..||+|+|+|.||+.+++.|..+.. -+|+.+|.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 3689999999999999999876421 24555553
No 147
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.84 E-value=2.6 Score=40.61 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd~ 121 (453)
.+||+|.|.|++|+.+++.|.......++ ++..++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 46899999999999999988765322344 5566653
No 148
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=80.42 E-value=4 Score=41.55 Aligned_cols=89 Identities=17% Similarity=0.058 Sum_probs=58.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
-||-|.| +|++|+.+++-+....++ .+.+||-. ++..+ +.| ++++ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~--~v~~V~p~-----------------~~~~~----------v~G--~~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN--IVGGVTPG-----------------KGGTT----------VLG--LPVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC--EEEEECCC-----------------CCcce----------ecC--eecc--C
Confidence 3899999 899999999888766542 66667631 11111 222 2232 3
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE-eCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-TAP 209 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII-Sap 209 (453)
..+++|..- ++|+++-+.+...-.+......+.|+|.+|| |+.
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 345555321 3799999999887777778888899987755 543
No 149
>PRK08605 D-lactate dehydrogenase; Validated
Probab=80.33 E-value=2.1 Score=44.06 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=24.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.++|||+|+|+||+.+.+.|.. .+ +++|.+.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~-~~-g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK-GY-GSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cC-CCEEEEEC
Confidence 4589999999999999998842 22 36776665
No 150
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=80.30 E-value=2.2 Score=45.15 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..+|||+|+|.||+.+.+.+.... ++|++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999987643 6876664
No 151
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.14 E-value=2.1 Score=46.92 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+||+.+++.|... .++|++.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 35899999999999999998754 378888764
No 152
>PLN02214 cinnamoyl-CoA reductase
Probab=80.03 E-value=8.3 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 4799999 8999999999998764 47777643
No 153
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.94 E-value=9.4 Score=37.67 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||+|.|.|.+|..+...|.+.. .+|..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 48999999999999999887653 35555543
No 154
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.61 E-value=7.1 Score=39.45 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=47.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|.|+|.|.||...++++..+. . .|+++.. +.+.+..+.+ +|- + ..++-+.-.+ . +
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~--~~~~~~~a~~----lGa---~--------~vi~~~~~~~-~--~ 228 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG---AAEIVCADV--SPRSLSLARE----MGA---D--------KLVNPQNDDL-D--H 228 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEeC--CHHHHHHHHH----cCC---c--------EEecCCcccH-H--H
Confidence 7999999999999998887653 3 4555532 2233322222 121 0 0111100001 0 0
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAk 202 (453)
... .. .++|+||||+|.-.+.+.+-..++.|.+
T Consensus 229 ~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 1589999999975445556677777753
No 155
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=79.16 E-value=3.6 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
.||+|.|.|.+|..++..+..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~g 29 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKN 29 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 48999999999999988776553
No 156
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=79.07 E-value=3.7 Score=43.68 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|+|.|.|.||+.+++.|..+.. -+|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~--~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGV--RKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCC--CeEEEEeC
Confidence 589999999999999999986531 15555654
No 157
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.01 E-value=2.4 Score=46.53 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
..+|||+|+|+||+.+.+.|... .++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 45899999999999999998754 378888864
No 158
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.88 E-value=2.5 Score=42.14 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||+|+|.|.||..+.+.|.... .+|.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 38999999999999999997653 57777753
No 159
>PLN02256 arogenate dehydrogenase
Probab=78.73 E-value=2.6 Score=43.09 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=26.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
++||+|+|+|.+|+.+++.|.... .+|++++..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 469999999999999999987542 578777654
No 160
>PLN02712 arogenate dehydrogenase
Probab=78.20 E-value=2.5 Score=47.76 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.0
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+++||||+|+|+||+.+++.|.... .+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 4679999999999999999997642 588877654
No 161
>PLN00106 malate dehydrogenase
Probab=77.78 E-value=12 Score=38.62 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.3
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r 108 (453)
.||+|.|. |+||..++..|..+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 39999996 99999999988754
No 162
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=77.61 E-value=2.9 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-+|||+|+|+||+.+++.|... .++|++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~---G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS---GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---cCEEEEEECc
Confidence 3799999999999999999764 4788777654
No 163
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=77.07 E-value=1.9 Score=38.37 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~ 109 (453)
||.|.|.|.+|-.+++.|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999987643
No 164
>PLN02712 arogenate dehydrogenase
Probab=76.96 E-value=2.9 Score=47.25 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=27.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
++||||+|+|+||+.+++.|.... ++|++++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 359999999999999999997653 688887653
No 165
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.48 E-value=12 Score=36.41 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.9
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+|-|-| +|-||+.+++.|.++. .+|+++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCC
Confidence 489999 8999999999998763 588888753
No 166
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=76.30 E-value=11 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
.||+|.|.|.||..++-.|..+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~ 28 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ 28 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5999999999999999888765
No 167
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=76.25 E-value=4.1 Score=43.26 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEecC---CeEE--EC--Ce
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN---ETIS--VD--GK 157 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~---~~l~--v~--Gk 157 (453)
.||+|.| +|-||++.|+++...+ +.|+|+++.--.+.+.++.+. +|...+ +-..++ ..+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQILEFRPKF------VAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHcCCCE------EEEcCHHHHHHHHHHhhcCCC
Confidence 3899999 9999999999987653 359999997654555554444 222211 111000 0000 01 21
Q ss_pred EEEEEeCCC-CCC-CCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 158 LIKVVSNRD-PLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 158 ~I~v~~~~d-p~~-l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.++++...+ ..+ ..+ ..+|+|+-+.-.+....---.++++| |++-+.+
T Consensus 75 ~~~v~~G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 75 RTEVLVGEEGICEMAAL--EDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CcEEEECHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 233433221 111 111 15899999987777777777889999 5666644
No 168
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=75.89 E-value=3.5 Score=42.27 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=30.1
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
|.|+|-|.|||.||+..+|.+..+ |.+|+|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEec
Confidence 678999999999999999999865 56999988654
No 169
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=75.65 E-value=12 Score=40.70 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=56.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
..||+|.|+|+-|+.++|.|.++. .++.+..+...++... ...+...+ |.+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~--------------------~~~~~~~~--i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVTVSDDRPAPEGLA--------------------AQPLLLEG--IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEEEEcCCCCccchh--------------------hhhhhccC--ceeecCc
Confidence 369999999999999999998864 4544443221111000 00000111 2222222
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAk 202 (453)
.+. ++|. ..|+|+-+=|...+.+...++.++|++
T Consensus 62 ~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 233 5564 689999999999999999999999984
No 170
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.23 E-value=11 Score=40.67 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=50.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
||.|.|+|++|+..++.|..+. .++++ .|. ..+....+.+ + +-.+ +.| ...+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~-----------g~~~-~~~-------~~~~ 65 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----R-----------GVAT-VST-------SDAV 65 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----C-----------CCEE-EcC-------cchH
Confidence 8999999999999999888653 46554 553 2222222111 0 1001 111 1112
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
+.+. +.|+||.+.|.-.+.+....+.+.|+
T Consensus 66 ~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 66 QQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2232 47999999999888887778888887
No 171
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.05 E-value=14 Score=36.30 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=67.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|.|.|.|.||..+++++..+. .. |+++. . +.+.+..+.++ |- + ..++.+.. . ..
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~~-~-~~~r~~~a~~~----Ga---~--------~~i~~~~~---~-~~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG---AARVVAAD-P-SPDRRELALSF----GA---T--------ALAEPEVL---A-ER 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC-C-CHHHHHHHHHc----CC---c--------EecCchhh---H-HH
Confidence 7899999999999988876553 44 66663 2 22222222111 10 0 01111000 0 00
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhh
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~La 246 (453)
..++.. ..++|+||||+|.-...+.+-..++.|.+-+++...... .+ ..+|...+-.....|+..-..+...+.
T Consensus 179 ~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~ 252 (280)
T TIGR03366 179 QGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GP---VALDPEQVVRRWLTIRGVHNYEPRHLD 252 (280)
T ss_pred HHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cc---eeeCHHHHHhCCcEEEecCCCCHHHHH
Confidence 000111 137999999999765556666777777644444332211 11 123433332122455554444434455
Q ss_pred hHHHHHhh
Q 012940 247 PFVKVMDE 254 (453)
Q Consensus 247 pvlk~L~d 254 (453)
.+++.|.+
T Consensus 253 ~~~~~l~~ 260 (280)
T TIGR03366 253 QAVRFLAA 260 (280)
T ss_pred HHHHHHHh
Confidence 55555554
No 172
>PLN02688 pyrroline-5-carboxylate reductase
Probab=74.65 E-value=6 Score=38.65 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~-~~ieiVaInd~ 121 (453)
|||+|+|+|.+|..+++.|.+... +..+|++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999986531 22367767443
No 173
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=74.54 E-value=9.6 Score=40.94 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=55.1
Q ss_pred eEEEEcC----ChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe
Q 012940 88 KVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (453)
Q Consensus 88 kVaInGf----GrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~ 163 (453)
+|+|+|. |.+|+.+++.|.+..+. =+|..||-. ++. +.|. +++
T Consensus 9 siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~-----------~~~------------------i~G~--~~~- 55 (447)
T TIGR02717 9 SVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPK-----------AGE------------------ILGV--KAY- 55 (447)
T ss_pred EEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCC-----------CCc------------------cCCc--ccc-
Confidence 7999995 88999999999876432 267777732 111 2232 222
Q ss_pred CCCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 164 ~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
.+.+++| ..+|+++-+++.....+......+.|+|.+||
T Consensus 56 -~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 56 -PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred -CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 2334444 25888888888877777777888888887755
No 174
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.19 E-value=14 Score=38.18 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
++||+|.|. |.||..++..|..+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 479999995 99999999988764
No 175
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.13 E-value=4.6 Score=40.01 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||+|+|+|.+|..+.+.|..... ..+|++++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 389999999999999999976532 246666653
No 176
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.85 E-value=4.4 Score=41.09 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=25.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+.++|+|.|+|.||+.+.|.+.++. ....|.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d 35 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG-LVVRIIGRD 35 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC-CeEEEEeec
Confidence 3569999999999999999998764 234444443
No 177
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=73.70 E-value=22 Score=38.15 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.8
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~ 109 (453)
...|.|.| +|++||.+.+.|.++.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC
Confidence 46899999 9999999999999885
No 178
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=73.49 E-value=13 Score=41.61 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+||.|-| +|.||+.+++.|.++. .+.+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 35899999 9999999999998752 2478888754
No 179
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.32 E-value=4.5 Score=39.86 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r 108 (453)
..||.|.|.|-+|-.+++.|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~ 33 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS 33 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999999754
No 180
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.66 E-value=5 Score=39.30 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
|||||+|+|++|+.+++.|...
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 3899999999999999999764
No 181
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=71.02 E-value=20 Score=37.31 Aligned_cols=80 Identities=25% Similarity=0.225 Sum_probs=50.8
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE-cCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEE
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI-nd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~ 162 (453)
+..+|-|-| .|-||.-+++.|++|. ..|.|- .++.+.+...||.+.+. .++ .++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~~------------a~~-------~l~l~ 62 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLEG------------AKE-------RLKLF 62 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhccc------------Ccc-------cceEE
Confidence 346899999 8999999999999884 465554 44556666667776542 111 11222
Q ss_pred e--CCCCCCCCccccCccEEEcCCCC
Q 012940 163 S--NRDPLQLPWAELGIDIVIEGTGV 186 (453)
Q Consensus 163 ~--~~dp~~l~W~~~gvDiVie~TG~ 186 (453)
. -.+++.|+=.-.|+|.||-++-.
T Consensus 63 ~aDL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 63 KADLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred eccccccchHHHHHhCCCEEEEeCcc
Confidence 1 13455555445578888887744
No 182
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.00 E-value=6.1 Score=39.54 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.7
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEcC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVND 120 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~-~~ieiVaInd 120 (453)
|.+||+|+|.|.+|..+++.|.++.. ..-+|.+.+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r 37 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL 37 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence 55699999999999999999986531 2235666653
No 183
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.96 E-value=25 Score=37.57 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=52.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
||.|.|.|.+|..+++.|.++. .+|+.++.. +.+....+.++ .+ + . | |.+.....+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~----------l~--~-~-----g--v~~~~~~~~ 73 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAI----------LE--A-L-----G--ATVRLGPGP 73 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHH----------HH--H-c-----C--CEEEECCCc
Confidence 8999999999999999998764 576666432 21111111110 00 0 0 1 111111111
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
. + ..+.|+||.++|.--..+....+.+.|. .|++-
T Consensus 74 ~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~~ 108 (480)
T PRK01438 74 T-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWGE 108 (480)
T ss_pred c-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecch
Confidence 1 1 1258999999998777777777778886 45543
No 184
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=70.87 E-value=2.4 Score=44.95 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=61.1
Q ss_pred EEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEecC---CeEE--ECCeEEEEEe
Q 012940 91 ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN---ETIS--VDGKLIKVVS 163 (453)
Q Consensus 91 InG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~---~~l~--v~Gk~I~v~~ 163 (453)
|.| +|-||++.|+++.... ++|+|+++.--.+.+.+.... +|...+ +-..++ ..+. ..|+.++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~-d~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHP-EHFKVVGLTANYNIELLEQQIKRFQPRI------VSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhccCCCcEEEE
Confidence 579 9999999999987653 359999997654555554444 232211 111000 0000 0121233433
Q ss_pred CCC-CCC-CCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 164 NRD-PLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 164 ~~d-p~~-l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
..+ ..+ ..+ ..+|+|+-+.-.+...+-.-.++++| |++-+.+
T Consensus 74 G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 74 GTDGLIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred CHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 221 111 111 25899999987777777777889999 5665644
No 185
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=70.84 E-value=19 Score=35.59 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 799999 9999999999998764 4776654
No 186
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=70.75 E-value=3.8 Score=42.77 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.1
Q ss_pred cccceeeEEEEcCChhHHHHHHHHHh
Q 012940 82 ETVAKLKVAINGFGRIGRNFLRCWHG 107 (453)
Q Consensus 82 ~~~m~ikVaInGfGrIGR~vlr~l~~ 107 (453)
..-+.-+|||.|+||||+.+++-|..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhh
Confidence 33445589999999999999988864
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.49 E-value=6.2 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
.||+|.|.|.||..++-.|..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5999999999999999877755
No 188
>PRK05086 malate dehydrogenase; Provisional
Probab=69.94 E-value=26 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.9
Q ss_pred eeEEEEcC-ChhHHHHHHHHHh
Q 012940 87 LKVAINGF-GRIGRNFLRCWHG 107 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~ 107 (453)
|||+|.|. |+||+.++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 58999995 9999999987744
No 189
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=69.94 E-value=5.8 Score=39.95 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||+|+|++|+.+++.|.+.. .+|+..|.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 38999999999999999998753 57766654
No 190
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.66 E-value=27 Score=34.37 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=50.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|.|+|.|.+|+.+++.+..+. .+++++.. +.+...++.++.. +.. ++- ++.
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~--~~~~~~~~~~~g~-------~~~--------~~~--------~~~ 209 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTG---PDVVLVGR--HSEKLALARRLGV-------ETV--------LPD--------EAE 209 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHHcCC-------cEE--------eCc--------ccc
Confidence 7899999999999999887663 56666643 2344433333211 100 110 000
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAk 202 (453)
.++ .++|++|||+|.-...+.+..+++.|.+
T Consensus 210 --~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 210 --SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred --ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 223 3699999999864445666677777763
No 191
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=69.55 E-value=17 Score=34.26 Aligned_cols=22 Identities=27% Similarity=0.735 Sum_probs=17.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~ 109 (453)
++.|.|||.+||-+++.|....
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~G 46 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLG 46 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccHHHHHHHhhCC
Confidence 7999999999999999998763
No 192
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.48 E-value=22 Score=37.25 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=57.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|+|.|+|-+|...++.+.... .+|+||....+...+|.-| +-...++.+ ++
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~~ 220 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------DS 220 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------Cc
Confidence 8999999999999888876543 6999997543322222211 111112221 11
Q ss_pred CCCC-ccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 012940 168 LQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (453)
Q Consensus 168 ~~l~-W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISap 209 (453)
+.+. ..+ .+|++|++.+ ..+-+.+-+.++.|-+-|++-.|
T Consensus 221 ~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 221 DALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111 111 1899999999 88888888888887766666555
No 193
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=69.16 E-value=10 Score=38.75 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=24.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|.| +|.||..++..|..+.. ..+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEE
Confidence 5899999 59999999999887631 12566654
No 194
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=69.14 E-value=8.1 Score=32.57 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=23.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 568999999999999998753 57888865
No 195
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=68.61 E-value=6.4 Score=39.62 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||+|+|++|+.+++.|.... .+|+..|.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 38999999999999999988653 57776654
No 196
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.45 E-value=6.8 Score=43.63 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=30.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhh
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASH 129 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~ 129 (453)
+.+|-|.||||+||.+.|.|.++. +++++|.. |++.+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLER--DISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC--CHHHHHH
Confidence 458999999999999999998753 68888864 4554433
No 197
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.39 E-value=6.7 Score=40.14 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
||+|+|.|.||..++-.|..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~ 21 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 799999999999998877755
No 198
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=68.26 E-value=6.6 Score=42.86 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.-+|+|.|+|+|||.+++.+.... ++|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 358999999999999999987653 5776664
No 199
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.24 E-value=11 Score=37.61 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=50.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
-+|.|+|.|.||..+++.+..+. .. |+++... .+....+.+ +|- + ..++.+.-.. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~~--~~~~~~~~~----~ga---~--------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDPS--PERLELAKA----LGA---D--------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHHHHHHH----hCC---C--------EEEcCCcchH---H
Confidence 37999999999999988876553 45 7776432 222222221 111 0 0111110000 0
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
...++. ...++|+||||+|.....+.+-.+++.|.+-+++
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 000000 0126999999999765445556677776643333
No 200
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=67.89 E-value=8.5 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||+|.|.|.+|+.++..|..+.. .-+|+.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 89999999999999999886531 11555554
No 201
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.59 E-value=6.6 Score=41.25 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||.|.|+|++|+.+.+.|.++. .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 48999999999999999998753 58888854
No 202
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=67.56 E-value=4.4 Score=40.87 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..+|.|.|.|-+|-.+++.|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998643
No 203
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=66.95 E-value=7.6 Score=43.51 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=29.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhh
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNA 127 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~ 127 (453)
.-+|-|.||||+|+.+.|.|.++. +++++|.. |++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH--DPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC--CHHHH
Confidence 358999999999999999998753 68888854 44444
No 204
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=66.71 E-value=23 Score=36.36 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|.|.|.||..+++++..+. .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 7899999999999998876653 46666543
No 205
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=66.51 E-value=7.4 Score=39.22 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||+|+|++|..+.+.|.+.. .+|++.|.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 38999999999999999987653 57776654
No 206
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.09 E-value=8.8 Score=38.13 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~-~~~ieiVaInd 120 (453)
|||+|+|.|.+|+.+++.|.... ....+|+..|.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 58999999999999999998653 11245665653
No 207
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.96 E-value=8.3 Score=36.45 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|.|.|.||-.++-++.+.. ++|+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 59999999999999988888764 6888884
No 208
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=65.93 E-value=73 Score=31.43 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=50.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|.|.|.|.+|+.+++++..+. ++|+++.+.. +....+-+ +|. + ..++. +.+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~~ 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DDL 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Ccc
Confidence 6899999999999988776543 6777775431 22211111 110 0 00110 000
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEE
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkV 204 (453)
.+.++|++++++|.....+.+..+++.|..-+
T Consensus 222 -----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 222 -----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred -----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 12368999999887667777888998877433
No 209
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.83 E-value=8.4 Score=38.90 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+||+|.|+|.+|+.+.+.|.... .+|...+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~ 34 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG---HRVRVWS 34 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CEEEEEe
Confidence 58999999999999999997653 4665554
No 210
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=65.66 E-value=52 Score=33.29 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|.|.|.||..+++++.... ..|+++.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~ 197 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMG---AAVVAID 197 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 7999999999999998887653 4676664
No 211
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=65.05 E-value=7.4 Score=38.75 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=24.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|+|.+|+.+.+.|.+.. ++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 6999999999999999988653 58777754
No 212
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=64.92 E-value=8 Score=38.36 Aligned_cols=103 Identities=29% Similarity=0.434 Sum_probs=59.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCC---------Chhhhhhhhccccceee-cCceEEEecCCeEEECC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVKNASHLLKYDSLLGT-FKADVKIVDNETISVDG 156 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~---------~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~l~v~G 156 (453)
.||+|=|||.+|+.+++.|.+.. ..||+|.|.. +.+.+..+. +. +|. +..- ... .-++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~~~----~~~--~~~~ 100 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVDDY----PLE--SPDG 100 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHSTTG----THT--CSST
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccccc----ccc--cccc
Confidence 58999999999999999999864 6899996641 223332221 11 111 1100 000 0000
Q ss_pred eEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEEeC
Q 012940 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 157 k~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVIISa 208 (453)
...+.. .+++ |. ..+||.+=|+ +.-++.+.++..++.||| +|+-+
T Consensus 101 --~~~~~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIveg 146 (244)
T PF00208_consen 101 --AEYIPN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEG 146 (244)
T ss_dssp --SEEECH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEES
T ss_pred --eeEecc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeC
Confidence 011111 0111 43 4799999887 788888988878888885 55643
No 213
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=64.83 E-value=18 Score=37.02 Aligned_cols=89 Identities=19% Similarity=0.111 Sum_probs=58.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
-||-|.| +|.+|+.+++.|.+..++ .+..||-... |+. +.| ++++ +
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVnp~~~---------~~~------------------v~G--~~~y--~ 55 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVTPGKG---------GTT------------------VLG--LPVF--N 55 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC--EEEEECCCCC---------CCe------------------EeC--eecc--C
Confidence 4899999 899999999999865432 5556763100 011 222 2232 3
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE-eCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-TAP 209 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII-Sap 209 (453)
+.+++|=.. ++|+++-+.+...-.+..+...++|+|.+|| |+.
T Consensus 56 sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 56 TVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred CHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 445555210 2899999999887778888888899998655 543
No 214
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=64.51 E-value=37 Score=36.49 Aligned_cols=33 Identities=36% Similarity=0.536 Sum_probs=28.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
..||+|=|||.+|+.+++.|++.. -+||++.|.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds 239 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDS 239 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 358999999999999999997653 599999986
No 215
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.35 E-value=12 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.7
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
+.||+|.|. |.||..++-.|..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 469999997 99999999887754
No 216
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.98 E-value=59 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-||-|+|.|.+|...++.|.+.. -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999888764 36666764
No 217
>PTZ00325 malate dehydrogenase; Provisional
Probab=63.60 E-value=41 Score=34.78 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=45.8
Q ss_pred CccEEEcCCCCCCCh----------------hhHHHHHHcCCCEEEE--eCCCCCCCCCeEEec---cCccccCccCCeE
Q 012940 176 GIDIVIEGTGVFVDG----------------PGAGKHIQAGAKKVII--TAPAKGADIPTYVVG---VNEKDYDHEVANI 234 (453)
Q Consensus 176 gvDiVie~TG~f~s~----------------e~a~~hl~aGAkkVII--Saps~d~dvPtvV~g---VN~~~~~~~~~~I 234 (453)
|.|+||-+.|.-... +..+...+.|.+++|+ |+|. |+=+.+.. -....+ .++++
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv---dv~~~~~~~~~~~~sg~--p~~~v 150 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV---NSTVPIAAETLKKAGVY--DPRKL 150 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHhhhhhccCC--Chhhe
Confidence 799999999985441 1122344578777655 5553 11111111 011122 22678
Q ss_pred EecCCcchhhhhhHHHHHhhhcCeeEEEE
Q 012940 235 VSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (453)
Q Consensus 235 VSnaSCTTn~Lapvlk~L~d~fGI~~~~m 263 (453)
+.. ++-=-+++-..|-+++|+..-.+
T Consensus 151 iG~---g~LDs~R~r~~la~~l~v~~~~V 176 (321)
T PTZ00325 151 FGV---TTLDVVRARKFVAEALGMNPYDV 176 (321)
T ss_pred eec---hhHHHHHHHHHHHHHhCcChhhe
Confidence 855 24667888889999999874333
No 218
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=63.35 E-value=9.1 Score=40.30 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-.+||.||||||+++.+.+... .+.++.-.+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~---gm~vI~~dp 177 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM---GMHVIGYDP 177 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc---CceEEeecC
Confidence 3599999999999999988754 256555443
No 219
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=63.03 E-value=42 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC-CCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGR-KDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r-~~~~ieiVaInd 120 (453)
+.+-|.| +|..|+.+++.+.|. .|+ .|++|-.
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~~FS--KV~~i~R 52 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAPQFS--KVYAILR 52 (238)
T ss_pred cceEEEeccccccHHHHHHHHhcccce--eEEEEEe
Confidence 5688999 999999999999886 332 4555543
No 220
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=62.86 E-value=39 Score=35.55 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=52.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhh---hhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a---~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
||.|.|.|.+|+.++|.|.++. .+|. +.|....+... .+++. -.| |.+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V~-~sD~~~~~~~~~~~~~~~~--------------------~~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEVT-VTDLKPNEELEPSMGQLRL--------------------NEG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEEE-EEeCCCCccchhHHHHHhh--------------------ccC--cEEEec
Confidence 5899999999999999998764 4543 45531111100 01110 001 122212
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.+++.+. +.|+||=+.|.-.+.+...++.+.|. -|++-
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i--~i~~~ 92 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI--PVVGD 92 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC--cEEEH
Confidence 2344442 57999999999877777777788886 34543
No 221
>PLN02494 adenosylhomocysteinase
Probab=62.66 E-value=9.8 Score=41.56 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-+|+|.|+|.||+.+++.+.... .+|++++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e~ 285 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTEI 285 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999987653 57777653
No 222
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.46 E-value=11 Score=37.55 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~-~~~ieiVaInd 120 (453)
+||+|.|.|.+|..+++.|.+.. .+..+|++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 58999999999999999987653 11246766764
No 223
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.45 E-value=17 Score=37.14 Aligned_cols=95 Identities=22% Similarity=0.200 Sum_probs=49.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|.|+|.|.||..+++++..+. . .|+++.. +.+.+..+.+ +|- + -.++.+.-... +.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~--~~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGDPNAV--EQ 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCchhHH--HH
Confidence 7999999999999988876553 4 4666532 2333322222 111 0 01111000000 00
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
..++. ..++|+||||+|.-...+.+-..++.|.+-|++
T Consensus 252 i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 252 VRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 00111 126899999999655556666777776643333
No 224
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=62.45 E-value=11 Score=37.86 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.||+|+|+|.||+.+.+.|..... ..+|++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 589999999999999998876431 12555554
No 225
>PLN02602 lactate dehydrogenase
Probab=62.42 E-value=14 Score=38.71 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=74.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~-~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
.||+|.|.|.||..++-.|..+.. ..+-++-||.- .+.=...|-.|.. .+.+. ..|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~-----~~~g~a~DL~~~~-------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD-----KLRGEMLDLQHAA-------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc-----hhhHHHHHHHhhh-------------hcCCC-CEEEeCC
Confidence 599999999999999987775532 22333333331 0111111222211 01111 1232222
Q ss_pred CCCCCCccccCccEEEcCCCCCC----Ch------------hhHHHHHHcC--CCEEEEeCCCCCCCCCeEEeccCcccc
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFV----DG------------PGAGKHIQAG--AKKVIITAPAKGADIPTYVVGVNEKDY 227 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~----s~------------e~a~~hl~aG--AkkVIISaps~d~dvPtvV~gVN~~~~ 227 (453)
+.+++ .+.|+||-+.|.-. ++ +.++...+.+ ++.+++|+|. |+-+.+. -....+
T Consensus 99 dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~-~k~sg~ 170 (350)
T PLN02602 99 DYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVA-WKLSGF 170 (350)
T ss_pred CHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHH-HHHhCC
Confidence 33333 27899999998743 33 2222222333 3334457764 1111111 000112
Q ss_pred CccCCeEEecCCcchhhhhhHHHHHhhhcCeeEEEEEee
Q 012940 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266 (453)
Q Consensus 228 ~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~mTTi 266 (453)
. +.+|| +.||.-=-+.+-..|.+++|+..-.+..+
T Consensus 171 p--~~rvi--G~gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 171 P--ANRVI--GSGTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred C--HHHEE--eecchHHHHHHHHHHHHHhCCCccceeee
Confidence 2 25677 35555556788888888888876555544
No 226
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=62.02 E-value=78 Score=32.27 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=68.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
-+|.|+|.|.||..+++++..+. ..++++... .+....+++ .+|- + .. ++... ...
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~-------~~-i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---D-------DY-LVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---c-------EE-ecCCC-----hHH
Confidence 36899999999999998877653 466666432 222212221 1121 1 00 11000 000
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhh
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~La 246 (453)
...+. .++|+||||+|...+.+.+-..++.|.+-|.+..+.. .. .++...+-.....|.....++..-+.
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~ 307 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PL-----QFVTPMLMLGRKVITGSFIGSMKETE 307 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CC-----cccHHHHhhCCcEEEEEecCCHHHHH
Confidence 01111 1689999999965455566677777764444443321 11 12222221111455554444444455
Q ss_pred hHHHHHhhhcCee
Q 012940 247 PFVKVMDEELGIV 259 (453)
Q Consensus 247 pvlk~L~d~fGI~ 259 (453)
-++..+.+. .++
T Consensus 308 ~~~~~~~~g-~l~ 319 (357)
T PLN02514 308 EMLEFCKEK-GLT 319 (357)
T ss_pred HHHHHHHhC-CCc
Confidence 555555443 344
No 227
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.82 E-value=11 Score=41.35 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.0
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.++=+|-|.|+|++||.+.|.|.++. .+++.|..
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 34457999999999999999998764 68888864
No 228
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=61.66 E-value=11 Score=37.64 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||+|.|.|.+|..+...|.... .+|..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 59999999999999999988653 46555543
No 229
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.53 E-value=15 Score=40.55 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=24.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.-||.|.|.|.||...++.+.... -+|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D 195 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFD 195 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 459999999999999999887653 2555553
No 230
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=61.39 E-value=14 Score=36.26 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
++++|.|+|.||..+.+.|.... .||+-.+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag---~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG---HEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC---CeEEEecC
Confidence 68999999999999999998643 57665644
No 231
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.90 E-value=36 Score=36.31 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=50.0
Q ss_pred eeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~-vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
.||.|.|.|..|+. ++|.|.++. .+|. +.|....+....|.+ . | +.+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D~~~~~~~~~l~~-----------------~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSDLKESAVTQRLLE-----------------L-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EECCCCChHHHHHHH-----------------C-----C--CEEeCCC
Confidence 37999999999999 799998764 4654 445312112222211 0 1 1121122
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
+++.+. +.|+||=+.|.-.+.+....+.+.|.
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 333332 57899999888877777777777776
No 232
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.74 E-value=48 Score=35.13 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=59.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCC-hhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEe-CC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~-~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~-~~ 165 (453)
-|+|.|.|.+|+.++|.|.++. .+|. +.|... ......|. +. .-| +.+.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~~~~~~~~~~l~----------------~~----~~g--~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPFA-VMDSREQPPGLDTLA----------------RE----FPD--VELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeEE-EEeCCCCchhHHHHH----------------hh----cCC--cEEEeCCC
Confidence 4899999999999999998764 4544 445311 11111110 00 001 22211 23
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEeccCcc
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvP-tvV~gVN~~ 225 (453)
+++.+. +.|+||-+.|.-.+.+....+.+.|. -|++-.. .-...| .-|-|-|..
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i--~i~~~~el~~~~~~~~~I~VTGT~GK 119 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI--EVIGDIELFAREAKAPVIAITGSNGK 119 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEEHHHHHHHhcCCCEEEEECCCcH
Confidence 444442 57999999998877777777778887 3554221 000123 456677755
No 233
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.57 E-value=12 Score=37.88 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r 108 (453)
+|||+|+|.|.||..+...|.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC
Confidence 46999999999999999888764
No 234
>PRK05865 hypothetical protein; Provisional
Probab=59.79 E-value=27 Score=40.84 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4899999 8999999999998763 57777754
No 235
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=59.51 E-value=12 Score=40.07 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
-+|+|.|+|.||+.+++.+.... .+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 48999999999999999887653 5777664
No 236
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=59.18 E-value=14 Score=34.55 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=22.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|.|.+|+.+...+.... ++|+-+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 7999999999999998887653 67665543
No 237
>PRK07201 short chain dehydrogenase; Provisional
Probab=59.18 E-value=59 Score=35.79 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
|||-|-| +|.||+.+++.|...+ ...+|+++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R~ 35 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVRR 35 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEECc
Confidence 3899999 9999999999998421 23577777653
No 238
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=58.78 E-value=36 Score=39.28 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=49.3
Q ss_pred eEEEEcCChhHHHH-HHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~v-lr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|.|.|.|..|+.. +|.|..+. .+|. +.|....+.+..|-+. | |.+....+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~~~~~~~~~L~~~----------------------g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDLSEGKTVEKLKAK----------------------G--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECCCCChHHHHHHHC----------------------C--CEEeCCCC
Confidence 59999999999998 88888764 4644 4554222222232110 1 11211122
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
++.++ +.|+||-+.|.-.+.+....+.+.|.
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 23332 57899999998877776666777775
No 239
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.59 E-value=12 Score=39.54 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||+|.|.+|..+...|.+.. .+|++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 48999999999999999998754 47777753
No 240
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.24 E-value=54 Score=35.34 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=50.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC-CC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-RD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~-~d 166 (453)
||.|.|+|..|+.+++.|..+. .+|.+. |. +......++. . .| |.+... .+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G---~~V~~~-D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~~ 68 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG---CDVVVA-DD-NETARHKLIE----------------V-----TG--VADISTAEA 68 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEEE-CC-ChHHHHHHHH----------------h-----cC--cEEEeCCCc
Confidence 7999999999999999998653 455444 43 1111111111 0 01 122222 12
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
++.++ +.|+||-+.|.-.+......+.+.|.
T Consensus 69 ~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 69 SDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred hhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 33332 57899999998877777777778886
No 241
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=56.95 E-value=14 Score=38.57 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|||+|+|.+|+.+++.|... .++|+..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS---GVDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4799999999999999998764 367665443
No 242
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=56.88 E-value=14 Score=37.29 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||||+|.|++|..+.+.|.... .++...|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 8999999999999999998653 4655454
No 243
>PRK07680 late competence protein ComER; Validated
Probab=56.87 E-value=16 Score=36.05 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
|||+|+|.|.+|+.+++.|.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 3799999999999999998765
No 244
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=56.64 E-value=8.2 Score=40.06 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..||.|+|.|.+|..+++.|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987643
No 245
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=56.49 E-value=5.2 Score=38.65 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..||+|.|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999997653
No 246
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.11 E-value=54 Score=35.37 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||.|.|+|+.|+.++|.|..+. .+|.+..
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G---~~v~~~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG---ARLRVAD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC---CEEEEEc
Confidence 7999999999999999998764 4655443
No 247
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=55.79 E-value=18 Score=38.29 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=60.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh-ccccceeecCceEEEe-cCCeEEECCeEEEEEe
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIV-DNETISVDGKLIKVVS 163 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll-kyDS~~G~f~~~v~~~-~~~~l~v~Gk~I~v~~ 163 (453)
.||.|.| +|-||.+.|.++.... +.|+|+++.--.+.+.+.-.. +|-..+-....+..+. -...+. .++|+.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~----~~~v~~ 76 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLP----GTEVLV 76 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhcc----CceEEe
Confidence 4899999 9999999999998764 458999997654555554433 2222110000000000 001111 123332
Q ss_pred CCC-CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 164 NRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 164 ~~d-p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
.++ ..++- ....+|+|+-+.-.+....-.-+++++|. ++.+.
T Consensus 77 G~~~l~e~a-~~~~~d~Vm~AivG~aGL~pTlaAi~aGK-~iaLA 119 (385)
T COG0743 77 GEEGLCELA-AEDDADVVMNAIVGAAGLLPTLAAIKAGK-TIALA 119 (385)
T ss_pred cHHHHHHHH-hcCCCCEEeehhhhhcccHHHHHHHHcCC-ceeec
Confidence 221 11110 11257888887755555554556888885 45443
No 248
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.76 E-value=44 Score=35.97 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=52.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
-||+|.|+|+-|+..+|.|..+. .+++ +.|....+...... +.+ ++ + +.++...+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~~~~~~~~~~~-----------~l~--~~------~--~~~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQA-LTLFCNAVEAREVG-----------ALA--DA------A--LLVETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEEE-EEcCCCcccchHHH-----------HHh--hc------C--EEEeCCCC
Confidence 38999999999999999998764 4543 44431111000000 000 11 1 11111222
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
++.+. ++|+||-+.|.-.+.+...++.+.|. -|++
T Consensus 64 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i--~i~~ 98 (468)
T PRK04690 64 AQRLA----AFDVVVKSPGISPYRPEALAAAARGT--PFIG 98 (468)
T ss_pred hHHcc----CCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 33332 57999999999888887778888887 3554
No 249
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.41 E-value=38 Score=35.69 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=54.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
.+|.|.|-|++|+.+++.|.++. .+|+++ |....+.+...++ +.+. .+ +.++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~----------~l~~-~~---------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE----------ELGE-LG---------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH----------HHHh-cC---------CEEEeCCc
Confidence 48999999999999999999874 465555 3322121111110 0000 01 11211111
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
++.+ ..+.|+||-++|...+.+....+.+.|. .|++.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 2111 1258999999999888887777888886 35543
No 250
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=55.10 E-value=9.8 Score=35.54 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~ 109 (453)
||+|.|.|-+|-.++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999987653
No 251
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.96 E-value=54 Score=34.51 Aligned_cols=88 Identities=30% Similarity=0.460 Sum_probs=51.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCC-h--hhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-V--KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~-~--~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
+|.|.|.|++|+.+++.|.++. .+|++. |... . .....|-+ . | +.+...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G---~~V~~~-d~~~~~~~~~~~~l~~---------------~-------g--~~~~~~ 58 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG---ANVTVN-DGKPFSENPEAQELLE---------------E-------G--IKVICG 58 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CEEEEE-cCCCccchhHHHHHHh---------------c-------C--CEEEeC
Confidence 6899999999999999998764 465444 4311 1 11111110 0 1 111111
Q ss_pred CCCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 012940 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (453)
Q Consensus 165 ~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIIS 207 (453)
.++.++. ..+.|+||-+.|...+......+.+.|. .|++
T Consensus 59 ~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i--~v~~ 97 (447)
T PRK02472 59 SHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI--PIIT 97 (447)
T ss_pred CCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 2222211 1147999999998888877788888887 3554
No 252
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=54.94 E-value=60 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
-+|.|.|.|.||..+++++..+. .+ |+++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 37999999999999988876553 44 66664
No 253
>PRK06545 prephenate dehydrogenase; Validated
Probab=54.91 E-value=16 Score=37.95 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||+|+|+|.||..+.+.|.... .++.++..+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 7999999999999999997653 234544443
No 254
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.82 E-value=16 Score=36.50 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=26.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||-|.| .|.||+.+.+.+.++. +++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCc
Confidence 6999999 8999999999987653 68888853
No 255
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.74 E-value=65 Score=34.43 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=58.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC-C
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR-D 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~-d 166 (453)
||+|.|+|+.|+.+++.|..+. .+|.+ .|..+......+++ . +.-.| +.+.... .
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G---~~V~~-~D~~~~~~~~~~~~----------~--------l~~~g--i~~~~~~~~ 71 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG---AKVTA-FDKKSEEELGEVSN----------E--------LKELG--VKLVLGENY 71 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC---CEEEE-ECCCCCccchHHHH----------H--------HHhCC--CEEEeCCCC
Confidence 8999999999999999998764 45444 44311100000000 0 00011 1121111 1
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCC-eEEeccCcc
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIP-TYVVGVNEK 225 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvP-tvV~gVN~~ 225 (453)
++.+ .+.|+||-+.|.-.+.+...++.+.|.+ |++-.. .....| .-|-|-|..
T Consensus 72 ~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i~--i~s~~e~~~~~~~~~vIaITGTnGK 128 (458)
T PRK01710 72 LDKL----DGFDVIFKTPSMRIDSPELVKAKEEGAY--ITSEMEEFIKYCPAKVFGVTGSDGK 128 (458)
T ss_pred hHHh----ccCCEEEECCCCCCCchHHHHHHHcCCc--EEechHHhhhhcCCCEEEEECCCCH
Confidence 2333 1579999999988888888888888873 555321 111223 345577754
No 256
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.33 E-value=17 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|.|.+|..+++.+.... .+|+.++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 7999999999999999988653 67777753
No 257
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.16 E-value=91 Score=32.88 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=59.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
||.|.|.|..|+..++.|..+. .+|.+......+..... +. .|-.+.. ...++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G---~~v~~~D~~~~~~~~~~----------------------l~-~g~~~~~-~~~~~ 60 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARG---VTPRVIDTRITPPGLDK----------------------LP-ENVERHT-GSLND 60 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CeEEEEcCCCCchhHHH----------------------Hh-cCCEEEe-CCCCH
Confidence 7999999999999999877653 46555432111100000 10 0211211 11122
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeE-EeccCcc
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTY-VVGVNEK 225 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps---~d~dvPtv-V~gVN~~ 225 (453)
..+ . +.|+||-+.|.-.+.+....+.+.|+. |++-+. .-.+.|+| |-|-|..
T Consensus 61 ~~~--~--~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~~el~~~~~~~~~I~VTGTnGK 116 (438)
T PRK03806 61 EWL--L--AADLIVASPGIALAHPSLSAAADAGIE--IVGDIELFCREAQAPIVAITGSNGK 116 (438)
T ss_pred HHh--c--CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEHHHHHhhhcCCCEEEEeCCCCH
Confidence 222 1 468999999998888888888999984 565321 11123543 6677765
No 258
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=53.55 E-value=7.2 Score=37.77 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..||.|.|.|-+|-.+++.|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999997543
No 259
>PRK08818 prephenate dehydrogenase; Provisional
Probab=53.47 E-value=17 Score=38.31 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=24.4
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEE
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
+.||+|+|. |.||+.+.++|.++ . ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~-~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-M-QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-C-CCEEEEE
Confidence 358999998 99999999999764 1 3566555
No 260
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.45 E-value=18 Score=36.75 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||+|.|.|.+|..+...|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999988653 46666665
No 261
>PLN02778 3,5-epimerase/4-reductase
Probab=53.42 E-value=20 Score=35.96 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=25.0
Q ss_pred ccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEE
Q 012940 83 TVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVV 116 (453)
Q Consensus 83 ~~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiV 116 (453)
+.+++||-|-| .|.||+.+++.|.++. .+|+
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~ 37 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG---IDFH 37 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC---CEEE
Confidence 34567999999 9999999999998764 3654
No 262
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=53.39 E-value=12 Score=36.96 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
|||+|.|.|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999999865
No 263
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=53.17 E-value=28 Score=36.74 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=52.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEE-EEeCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~-v~~~~ 165 (453)
-.|+|.|.|-||-..+..+....- -.|+||.- .++.+....++--|| .+|.++.. +.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA--~~IiAvD~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA--GRIIAVDI--NPEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC--ceEEEEeC--CHHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 369999999999988876654321 37778742 233333333333333 13333221 110
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
...++ | +.|+|++|||+|.....+.+-.....|=+-|+|
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 01111 2 238999999999876665555444443333444
No 264
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.77 E-value=34 Score=34.82 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~i-eiVaInd 120 (453)
-+|.|.|.|.||..+++++.... . .|+++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEcC
Confidence 37999999999999998887553 4 5666643
No 265
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=52.70 E-value=18 Score=38.49 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||+|.|.|.+|-.+...|.++. .+|++++-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 68999999999999999998764 58888863
No 266
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=52.63 E-value=18 Score=36.41 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.||+|+|.|.+|..+.+.|.... .+|...|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998653 47666654
No 267
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.40 E-value=24 Score=37.64 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.4
Q ss_pred ccceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 83 TVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 83 ~~m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
..+.+||-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 34446899999 8999999999998763 5777764
No 268
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=51.92 E-value=21 Score=36.06 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~-~~~ieiVaInd 120 (453)
+|||+.|+|.+|+.+++-|.+.. -+.-+|...|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 58999999999999999998764 22346555554
No 269
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=51.86 E-value=19 Score=37.10 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.||||+|+|.+|+.+++.|.... ++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999997643 56554443
No 270
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=51.79 E-value=19 Score=36.36 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||+|+|.|.+|..+...|..+. .+|+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 38999999999999999988763 57777754
No 271
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.52 E-value=1.1e+02 Score=30.30 Aligned_cols=94 Identities=19% Similarity=0.116 Sum_probs=48.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|.|+|-|.+|+.+++++..+. .+ ++++.. +.+...++.+|... . .++.+.....+ .-
T Consensus 168 ~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~~--s~~~~~~~~~~g~~--------------~-~~~~~~~~~~~-~i 226 (343)
T cd08235 168 TVLVIGAGPIGLLHAMLAKASG---ARKVIVSDL--NEFRLEFAKKLGAD--------------Y-TIDAAEEDLVE-KV 226 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHhCCc--------------E-EecCCccCHHH-HH
Confidence 7999999999999998776543 56 655533 33333333322210 0 01111000000 00
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEE
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkV 204 (453)
....+. .++|+||+|+|.......+..+++.+.+-+
T Consensus 227 ~~~~~~--~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 227 RELTDG--RGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred HHHhCC--cCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 001111 369999999985433445556777776433
No 272
>PRK06988 putative formyltransferase; Provisional
Probab=51.47 E-value=19 Score=36.83 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=25.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|+|||.+.|++.+|...|+.|.++. ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 4589999999999999999998753 566655
No 273
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=51.18 E-value=6.9 Score=40.38 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~ 109 (453)
||.|+|.|-+|-.+++.|..-.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999997643
No 274
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=51.12 E-value=48 Score=33.12 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=50.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|.|.|.|.||+.+++++..+. .+++++... .+....+-++ |- +. .++.++-.+. +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~~----g~----------~~-~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARKL----GA----------HH-YIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHHc----CC----------cE-EecCCCccHH--HHH
Confidence 6899999999999999887653 467666542 2223222221 10 00 1221110000 001
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
. .| .++|++|+++|.-...+.+-.++..|..-|.+
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 1 12 26899999987544556666677766543334
No 275
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=51.11 E-value=24 Score=32.43 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=25.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+.||.|.|.|++|+..++++.... .+++.+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT----EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC---CEEEeccC
Confidence 469999999999999999998764 57777765
No 276
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=50.84 E-value=21 Score=36.19 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=19.9
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r 108 (453)
|+|||+|+|.|.||-.+.-.|.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhC
Confidence 457999999999999888777654
No 277
>PRK06444 prephenate dehydrogenase; Provisional
Probab=50.81 E-value=13 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHh
Q 012940 87 LKVAING-FGRIGRNFLRCWHG 107 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~ 107 (453)
|||+|+| .|+.||.+.+.+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~ 22 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD 22 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh
Confidence 4899999 89999999887754
No 278
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=50.56 E-value=55 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|.|.|.||..+++++..+. ..++++.
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~ 209 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFG---LRVTVIS 209 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcC---CeEEEEe
Confidence 6899999999999998877653 4666664
No 279
>PLN02740 Alcohol dehydrogenase-like
Probab=50.53 E-value=30 Score=35.64 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
+|.|+|.|.||..+++++..+. . .|+++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 7999999999999999887653 4 466664
No 280
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=50.47 E-value=22 Score=35.52 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||+|+|.|.+|+.++..+.... .+|+.++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~ 34 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG---YDVTIVDV 34 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC---CeEEEEeC
Confidence 7999999999999999988653 57766653
No 281
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.25 E-value=21 Score=35.56 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||+|+|.|.+|+.+...|.... .+|+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 7999999999999999988653 4666564
No 282
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=49.08 E-value=22 Score=33.85 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
++|.|.| +|.||+.+++.|.++. -+|+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 4799999 9999999999999873 57777765
No 283
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=48.90 E-value=27 Score=36.07 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
++||.|-| +|-||+.+++.|.++. .+|+++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEe
Confidence 57999999 8999999999998763 58877753
No 284
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=48.86 E-value=14 Score=36.42 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=55.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC-CCChhhhhhhhccc-cceeecCceEEEecCCeEEEC-CeEEEEEeC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYD-SLLGTFKADVKIVDNETISVD-GKLIKVVSN 164 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd-~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~l~v~-Gk~I~v~~~ 164 (453)
||.|+|.|-+|-.+++.|.......+.| |.+ ..+...+..-+-|. +.-|+.+.++-. ..--.+| +-+|....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~i--vD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~--~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV--IDMDTIDVSNLNRQFLFRPKDIGRPKSEVAA--EAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCEEcchhhccccCCChhhCChHHHHHHH--HHHHHHCCCCEEEEEec
Confidence 6899999999999999997654433332 322 13333333222222 223555443310 0000011 111222111
Q ss_pred C-C-CCCC--C-ccccCccEEEcCCCCCCChhhHHH-HHHcCCCEEEEeCC
Q 012940 165 R-D-PLQL--P-WAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAP 209 (453)
Q Consensus 165 ~-d-p~~l--~-W~~~gvDiVie~TG~f~s~e~a~~-hl~aGAkkVIISap 209 (453)
+ . ...+ + |+ +.|+||+|+..+..+.+.-. ..+.+. -+|.+.
T Consensus 77 ~i~~~~~~~~~f~~--~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g 123 (234)
T cd01484 77 KVGPEQDFNDTFFE--QFHIIVNALDNIIARRYVNGMLIFLIV--PLIESG 123 (234)
T ss_pred cCChhhhchHHHHh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 1 0 0111 1 33 78999999998766654442 334553 345443
No 285
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=48.64 E-value=68 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=23.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|-|+| .|.+|..+++++.... .+++++..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~ 176 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAG 176 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 789999 7999999999887653 57766653
No 286
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=48.63 E-value=1e+02 Score=30.76 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=47.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
-+|.|.|.|.+|+.+++.+.... ..++++... .+...++.+ +|. +. .++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g~----------~~-vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALK----LGA----------DE-FIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC----------cE-EecCcchhh-----
Confidence 36888899999999888776542 566666432 222222211 110 00 011110000
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAk 202 (453)
...+ ..++|+||+|+|.-...+.+-.+++.+.+
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~ 258 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGGT 258 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCCE
Confidence 0111 13799999999976445666677766653
No 287
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.51 E-value=23 Score=35.08 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||+|+|.|.+|..+...+..+. .+|+.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 7999999999999999988653 4766664
No 288
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=48.20 E-value=45 Score=33.79 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=21.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|.|.|.||..++.++.... ....|+++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIY-PESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhc-CCCcEEEEe
Confidence 7999999999998877664310 113566554
No 289
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=48.06 E-value=23 Score=38.52 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||||+|.|.+|..++..+.... ++|+..+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G---~~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG---IDVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 48999999999999999887653 57665543
No 290
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=48.01 E-value=15 Score=42.07 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||||+|.|.+|..+...+... .++|+-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~---G~~V~l~d 365 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK---GLKTVLKD 365 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC---CCcEEEec
Confidence 699999999999999887754 36766553
No 291
>PRK08655 prephenate dehydrogenase; Provisional
Probab=47.20 E-value=24 Score=37.81 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|+| +|.+|+.+.+.|.+.. .+|++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4899998 9999999999997653 4666554
No 292
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.07 E-value=23 Score=40.48 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||+|+|.|.+|+.+...+... .++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~---G~~V~l~d 343 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK---GVPVIMKD 343 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC---CCeEEEEe
Confidence 799999999999999887754 36765554
No 293
>PLN02427 UDP-apiose/xylose synthase
Probab=47.04 E-value=25 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||.|-| +|.||+.+++.|.++. ..+|+++..
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 5899999 9999999999998762 258888864
No 294
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.61 E-value=1.3e+02 Score=31.78 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=51.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCC-hhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC-C
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~-~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~-~ 165 (453)
||.|.|.|..|+..++.|..+. ...+|. +.|... +... +.|.- | +.+... .
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~~----------------------~~l~~-g--~~~~~g~~ 61 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPGQ----------------------EQLPE-D--VELHSGGW 61 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchhH----------------------HHhhc-C--CEEEeCCC
Confidence 7999999999999999988652 124554 444311 1000 00100 1 222222 2
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
+++.++ +.|+||-+.|.-.+.+....+.+.|.
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 444442 57999999999888777778888886
No 295
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.58 E-value=27 Score=35.02 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.||+|+|.|.+|..+...|.... .+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 38999999999999999887643 5776665
No 296
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=46.58 E-value=1.2e+02 Score=29.03 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||.|+|-|.+|..-++.|.+.. -.|+.|..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g---a~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG---AQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 8999999999999999888754 35555543
No 297
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=46.49 E-value=83 Score=32.09 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
-+|.|.|.|.||..+++++..+. . .|+++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 37999999999999988776553 4 466664
No 298
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.34 E-value=26 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+.+|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 358999999999999999998753 57777853
No 299
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.30 E-value=1.2e+02 Score=32.14 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=53.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
.||.|.|.|.+|+.++|.|.++. ..|++......++....|-++ ..| +.+.....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l~~~--------------------~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKPERVAQIGKM--------------------FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHHhhc--------------------cCC--cEEEeCCC
Confidence 37999999999999999998764 465554322111111111000 012 22222221
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
++.+ + .+.|+||-+.|.--+.+....+.+.|. -|++-
T Consensus 61 ~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~~~ 97 (445)
T PRK04308 61 KDAL-D--NGFDILALSPGISERQPDIEAFKQNGG--RVLGD 97 (445)
T ss_pred CHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEEEh
Confidence 2111 1 257999999999888888888888886 35543
No 300
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=46.16 E-value=82 Score=31.08 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-+|.|.|.|-+|+.+++++.... ++++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37899998889999888877653 57766654
No 301
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.15 E-value=84 Score=35.91 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhh-------hhccccceeecCceEEEecCCeEEECCeEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASH-------LLKYDSLLGTFKADVKIVDNETISVDGKLI 159 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~-------LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I 159 (453)
-||+|+|.|.+|+.+...+..+. .++|+-+.- +.+.+.. ++...-..|++..... ... . ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~--~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDI--NPQGINHALKYSWDLLDKKVKRRHLKPSER---DKQ--M--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHc--CCeEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHH--H--hcE
Confidence 37999999999999998776221 267655542 2222222 2211111222221100 000 0 123
Q ss_pred EEEeCCCCCCCCccccCccEEEcCCCCCCChh-----hHHHHHHcCCCEEEEeCCCCC--------CCCC---eEEeccC
Q 012940 160 KVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP-----GAGKHIQAGAKKVIITAPAKG--------ADIP---TYVVGVN 223 (453)
Q Consensus 160 ~v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e-----~a~~hl~aGAkkVIISaps~d--------~dvP---tvV~gVN 223 (453)
++. .+.+.+ .++|+||||...-...+ ...+++..++ ++-|+.|.- -.-| +.+--.|
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 443 233333 27999999976544332 1223334444 666776620 0122 1122234
Q ss_pred ccccCccCCeEEecCCcchhhhhhHHHHHhhhcCeeEEEE
Q 012940 224 EKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (453)
Q Consensus 224 ~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~~m 263 (453)
+-.+.+- --||..+.++-..+.-+...+ +..|..-+.+
T Consensus 451 P~~~~~l-VEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv~v 488 (708)
T PRK11154 451 PVEKMPL-VEVIPHAKTSAETIATTVALA-KKQGKTPIVV 488 (708)
T ss_pred ccccCce-EEEECCCCCCHHHHHHHHHHH-HHcCCceEEE
Confidence 3333332 347777666666666665555 4466654443
No 302
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=46.10 E-value=71 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
-+|.|+|.|.||...++++.... . +|+++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 37999999999999988876553 4 566664
No 303
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=45.91 E-value=31 Score=38.51 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=29.5
Q ss_pred cceeeEEEEc-CChhHHHHHHHHHhCCCCCceE-EEEcCCCChhhh
Q 012940 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDV-VVVNDSGGVKNA 127 (453)
Q Consensus 84 ~m~ikVaInG-fGrIGR~vlr~l~~r~~~~iei-VaInd~~~~~~~ 127 (453)
+++|||-|-| .|.||+.+.+.|.++. .++ ++..++.+.+.+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~~~~~l~d~~~v 420 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEYGKGRLEDRSSL 420 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC---CeEEeeccccccHHHH
Confidence 4567999999 8999999999998653 465 444444444443
No 304
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=45.89 E-value=85 Score=31.53 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.||..+++++..+. .+ |+++.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G---~~~v~~~~ 192 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALG---AKSVTAID 192 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 7999999999999998887653 45 45553
No 305
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=45.66 E-value=52 Score=33.12 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 012940 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|+|.|.|.+|..+..++..+.. . +|+-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-~-eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-G-DVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-c-EEEEE
Confidence 6899999999999887775431 1 65555
No 306
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=45.65 E-value=29 Score=35.05 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=26.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||.|-| .|.||+.+++.|.++. ..+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 4899999 8999999999998642 258888864
No 307
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=45.30 E-value=25 Score=37.17 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=27.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhh
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Ll 131 (453)
|||+|.|.|.+|..+..++.. . .+|++++- +.+.+..+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G---~~VigvD~--d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N---HEVVALDI--LPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C---CcEEEEEC--CHHHHHHHH
Confidence 489999999999999976653 2 68888864 344444444
No 308
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=45.26 E-value=39 Score=32.46 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||.|.| .|.||+.+++.|..+. .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC---CEEEEEec
Confidence 5899999 8999999999988753 47766643
No 309
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.17 E-value=28 Score=34.43 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|.|.|.||..+...|.+.. .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g---~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG---RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CceEEEe
Confidence 48999999999999999888653 3544454
No 310
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=44.96 E-value=34 Score=35.37 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
++||+|.|. |.||..++-.|..+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~ 26 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASG 26 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC
Confidence 579999996 99999998877754
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=44.90 E-value=1.2e+02 Score=29.65 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|-|+|.|.+|+.+++++..+. ..++++.. +.+...++-++ |. . .+ ++.+.... .+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G---~~V~~~~~--s~~~~~~~~~~----g~-~---------~~-~~~~~~~~-~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG---AAVIAVDI--KEEKLELAKEL----GA-D---------EV-LNSLDDSP-KDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CEEEEEcC--CHHHHHHHHHh----CC-C---------EE-EcCCCcCH-HHH-H
Confidence 7888899999999998887653 56766643 22333222111 10 0 00 11000000 000 0
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
...+ ..++|+||+|.|.-...+.+..+++.|.+-+.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0111 136999999998654555667788877743333
No 312
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=44.30 E-value=32 Score=27.99 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
.|++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 3799999999999999998765
No 313
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=44.00 E-value=26 Score=40.03 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||||+|.|.+|..+..++... .++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~---G~~V~l~d 343 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK---GTPIVMKD 343 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC---CCeEEEEe
Confidence 799999999999999888764 36765554
No 314
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.74 E-value=35 Score=35.19 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.1
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r 108 (453)
+||+|.|. |.||..++..|..+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC
Confidence 48999996 99999999888754
No 315
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=43.46 E-value=33 Score=36.72 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=27.3
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.|||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 46999999 9999999999998864 58888854
No 316
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.37 E-value=1.2e+02 Score=29.16 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.+|+.+++.+..+. .. ++++.
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 6899999999999988887653 45 66664
No 317
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=43.36 E-value=42 Score=33.39 Aligned_cols=29 Identities=14% Similarity=0.428 Sum_probs=23.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||-|-| .|.||+.+.+.|.++. +|+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEec
Confidence 4899999 8999999999987652 455554
No 318
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=43.35 E-value=10 Score=37.33 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
.||.|.|.|-+|-.++..|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999997643
No 319
>PRK05442 malate dehydrogenase; Provisional
Probab=43.30 E-value=32 Score=35.65 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=18.9
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
+.||+|.|. |.||..++-.|..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 369999996 99999998776643
No 320
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=43.18 E-value=1.1e+02 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
+|.|+|.|.||+.+++++.... . .++++.
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 7899999999999998877653 5 666664
No 321
>PLN02240 UDP-glucose 4-epimerase
Probab=43.16 E-value=36 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.9
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|..||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 346899999 8999999999998763 58888753
No 322
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=42.90 E-value=32 Score=36.10 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-||.|.|+|++|+.+++.+.... .+|++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998653 46666653
No 323
>PRK07877 hypothetical protein; Provisional
Probab=42.82 E-value=11 Score=43.32 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=56.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEcC-CCChhhhhhhhccccceeecCceEEEecCCeEEECC-eEEEEE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVV 162 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~-~~~ieiVaInd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G-k~I~v~ 162 (453)
.-||+|+|.| +|-.++..|.... ...+- -|.. ..+..++-..+-..+..|+.+.++- ...-..+|- -+|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~--lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a--~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELR--LADFDTLELSNLNRVPAGVFDLGVNKAVVA--ARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEE--EEcCCEEcccccccccCChhhcccHHHHHH--HHHHHHHCCCCEEEEE
Confidence 4589999999 9999998887543 12222 2221 1222222222211122465543321 111111221 133333
Q ss_pred eCC-CCCCCCccccCccEEEcCCCCCCChhhHH-HHHHcCCCEEEEeCC
Q 012940 163 SNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAG-KHIQAGAKKVIITAP 209 (453)
Q Consensus 163 ~~~-dp~~l~W~~~gvDiVie~TG~f~s~e~a~-~hl~aGAkkVIISap 209 (453)
.+. ++++++=--.++|+||||+..|-++-... ...+.|. -+|++.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~ 228 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMAT 228 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 321 22222200126899999999987765443 3445565 344443
No 324
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=41.62 E-value=1.3e+02 Score=29.84 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-+|.|.|.|.+||.+++.|.+.. .+|..+|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999999998653 46666664
No 325
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=41.54 E-value=29 Score=37.80 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|||+|.|..|..+.+.|.++. ++|.+.|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 48999999999999999998764 57777764
No 326
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=41.43 E-value=32 Score=33.39 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd 120 (453)
+|.|+|.|.+|+.+++++.... ++ ++++..
T Consensus 132 ~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~ 162 (312)
T cd08269 132 TVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDR 162 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 7899999999999999887653 56 666654
No 327
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.28 E-value=37 Score=34.56 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
|||+|+|.|.||..++..|..+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 328
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=41.23 E-value=35 Score=36.32 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-+|+|.|+|.||+.+++.|..+.. -+|+.+|..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGV--GKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCC--CEEEEEeCC
Confidence 489999999999999999986531 366667653
No 329
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.01 E-value=37 Score=33.80 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.||+|+|.|.+|..+...+.... .+|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 47999999999999999887653 5766554
No 330
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=40.95 E-value=46 Score=29.32 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.||+|.|.|.+|+.+++.|.... .-++..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG--AAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CCEEEEEc
Confidence 48999999999999999997652 12454454
No 331
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=40.54 E-value=31 Score=36.17 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||.+.|.|.|||-++-.++.+. +.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEE
Confidence 48999999999997766555543 36777775
No 332
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=40.42 E-value=1e+02 Score=30.59 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaI 118 (453)
+|.|+|.|.+|+.+++++..+. + .|+++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 7899999999999999887663 4 57777
No 333
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=40.36 E-value=1.1e+02 Score=30.62 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.4
Q ss_pred EEc-CChhHHHHHHHHHhCC
Q 012940 91 ING-FGRIGRNFLRCWHGRK 109 (453)
Q Consensus 91 InG-fGrIGR~vlr~l~~r~ 109 (453)
|-| .|.||+.+++.|.++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g 21 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG 21 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC
Confidence 556 9999999999999874
No 334
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=40.13 E-value=50 Score=33.17 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
+|.|+|.|.+|+.+++.+.... . .|+++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 7899999999999999887653 5 555553
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.03 E-value=57 Score=34.53 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=51.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhh---hhhhhccccceeecCceEEEecCCeEEECCeEEEEEeC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN---ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~---~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~ 164 (453)
||.|+|.|..|+..++.|..+. .+|.+......+.. ..+|.+ . | +++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~~~D~~~~~~~~~~~~~l~~---------------~-------g--i~~~~g 54 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVVVSDRNDSPELLERQQELEQ---------------E-------G--ITVKLG 54 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEEECCCCchhhHHHHHHHHH---------------c-------C--CEEEEC
Confidence 7999999999999999988763 46544432211111 011111 0 1 111111
Q ss_pred CCCC--C--CCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 165 RDPL--Q--LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 165 ~dp~--~--l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.+++ . ..|. +.|+|+=+.|.-.+.+...++.+.|++ |++-
T Consensus 55 ~~~~~~~~~~~~~--~~d~vv~s~gi~~~~~~~~~a~~~~i~--v~~~ 98 (459)
T PRK02705 55 KPLELESFQPWLD--QPDLVVVSPGIPWDHPTLVELRERGIE--VIGE 98 (459)
T ss_pred CccchhhhhHHhh--cCCEEEECCCCCCCCHHHHHHHHcCCc--EEEh
Confidence 1111 0 1232 578888899987777777777888873 5553
No 336
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=40.00 E-value=39 Score=33.66 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||.|.| +|-||+.+++.|.++. .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEec
Confidence 4899999 8999999999998753 57777753
No 337
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.96 E-value=41 Score=29.86 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-||.|.|.|-+||.++..|..+... +|..+|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAK--EITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECC
Confidence 3899999999999999999987432 36667763
No 338
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=39.92 E-value=36 Score=36.62 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-||.|+|.|-+|+.+++.|.++.. -.|.-+|..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGV--KKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence 469999999999999999998743 355557764
No 339
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=39.67 E-value=85 Score=32.45 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=36.3
Q ss_pred ccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcch
Q 012940 177 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (453)
Q Consensus 177 vDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTT 242 (453)
-|++|..+..-...+-.+.|++-|| +|+++.-.. |+-+.|--+|.=.+-+ ..+|+.++-.|
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~-dvd~~vk~~~~V~Ii~--GGlV~~s~~it 291 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPK-DVDTSVKNVGGVRIIP--GGLVEHSLDIT 291 (351)
T ss_pred cceEEEEeecCCCceechhhccCCe--EEEcCCcCc-ccccccccCCCeEEec--CccccCccccc
Confidence 4555555544455567789999999 899876422 4556666666332211 34665554443
No 340
>PLN02827 Alcohol dehydrogenase-like
Probab=39.66 E-value=1.2e+02 Score=31.21 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.||..+++++..+. .. ++++.
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G---~~~vi~~~ 225 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRG---ASQIIGVD 225 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 7899999999999998876653 43 55553
No 341
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=39.63 E-value=2.9e+02 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|.| .|.||..+++++.... ++++++.
T Consensus 196 ~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 196 NVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 799999 5999999988876553 5666663
No 342
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=39.63 E-value=1.6e+02 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.2
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
+|.|+|.|.+|..+++++...
T Consensus 164 ~VlI~g~g~vg~~~~~la~~~ 184 (341)
T cd08262 164 VALVIGCGPIGLAVIAALKAR 184 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHc
Confidence 789999999999998887655
No 343
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.53 E-value=36 Score=35.86 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=52.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
||.|.|+|.+|+.+++.|.++. .+|++..+. .+. +.+ .+.. + + .. ...+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~~---~~~----~~~~-------~-~---------~~--~~~~ 53 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LEA---LQS----CPYI-------H-E---------RY--LENA 53 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--ccc---cch----hHHH-------h-h---------hh--cCCc
Confidence 7999999999999999998764 466555432 110 000 0000 0 0 00 0112
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
+.++ .+.|+||-+.|.--..+....++++|++ +++-
T Consensus 54 ~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 54 EEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred HHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 2221 1478999999988778888899999984 5543
No 344
>PLN02206 UDP-glucuronate decarboxylase
Probab=39.34 E-value=49 Score=35.49 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=27.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+||-|.| +|-||+.+++.|.++. .+|+++..
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 47999999 9999999999998864 58887753
No 345
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=39.25 E-value=1.3e+02 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
-+|.|+|.|.||...++++..+. . .|+++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 37999999999999998886553 4 466653
No 346
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.19 E-value=78 Score=31.22 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.+|+.+++.+..+. +. ++++.
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~ 191 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG---ASRVTVAE 191 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 7899999999999998887653 45 55554
No 347
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=39.01 E-value=32 Score=34.78 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=61.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC--CCh-hhhhhhhccccceeecCceEEEecCCeEEECC------eE
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDG------KL 158 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~--~~~-~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G------k~ 158 (453)
+|.|.|-|-||--++++|.......+.|+-..+. .+. .++.-|+ ++.|+-+-++- .+.-..||= ..
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~---~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL---GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh---hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 7999999999999999998543333444333222 121 2332222 34566443221 111111221 11
Q ss_pred EEEEeCCCCCCCCccccCccEEEcCCCCCCChhhHHH-HHHcCCCEEEEeCCCCCCCCCeE
Q 012940 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGADIPTY 218 (453)
Q Consensus 159 I~v~~~~dp~~l~W~~~gvDiVie~TG~f~s~e~a~~-hl~aGAkkVIISaps~d~dvPtv 218 (453)
..+ .+.+.+++-.. +.||||||.-....+-..-. ..+.+- +||-|..+...-+||-
T Consensus 107 ~f~-t~en~~~~~~~--~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Gag~k~DPTr 163 (263)
T COG1179 107 DFI-TEENLEDLLSK--GFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGAGGKLDPTR 163 (263)
T ss_pred hhh-CHhHHHHHhcC--CCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccccCCCCCce
Confidence 111 22334444333 78999999988776644433 233444 4444544432234654
No 348
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=38.71 E-value=86 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd 120 (453)
+|.|+|.|.+|+.+++++..+. +. ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILG---AKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 7999999999999998876543 45 666654
No 349
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=38.58 E-value=24 Score=35.98 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=27.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~------~~~ieiVaInd~ 121 (453)
+++|+|+|.|-|||.+|+.+.... --.+.+|+|.+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 578999999999999998775421 113688888764
No 350
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=38.56 E-value=16 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.9
Q ss_pred cccccccccccccCccccccc
Q 012940 35 LDVAEFAGLRANAGATYATGA 55 (453)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ 55 (453)
.-++-|+|||+...+|..|+.
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~ 42 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKS 42 (45)
T ss_pred ceeeccccccccccCcccccc
Confidence 457789999999988876664
No 351
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=38.28 E-value=1.7e+02 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.+|+.+++++..+. .. ++++.
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 6899999999999999887653 45 65564
No 352
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.18 E-value=43 Score=34.63 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||||+|.|.+|+.+...+.... ++|+..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999998887653 6766554
No 353
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=37.57 E-value=52 Score=35.08 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
++||+|.|. |+||-.++-.|..+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999997 99999999888755
No 354
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.28 E-value=47 Score=33.13 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
.||+|.|.|.+|..+...+.... .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 37999999999999999887653 4655554
No 355
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=37.11 E-value=1.5e+02 Score=30.19 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=22.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGf-GrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+|. |.||..+++++..+. .+++++.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 7999995 999999998876653 5776664
No 356
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.04 E-value=1.3e+02 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-+|.|+|.|.+|+.+++.+.... .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC
Confidence 37999997669999998887653 56666643
No 357
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.93 E-value=1.1e+02 Score=30.38 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+|.|.+|+.+++.+.... +.++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 7999999999999998887653 67776644
No 358
>PRK10083 putative oxidoreductase; Provisional
Probab=36.68 E-value=1.1e+02 Score=30.49 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.4
Q ss_pred eEEEEcCChhHHHHHHHHHh
Q 012940 88 KVAINGFGRIGRNFLRCWHG 107 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~ 107 (453)
+|.|+|-|.+|+.+++++..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 79999999999999887753
No 359
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=36.57 E-value=1.4e+02 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+| .|.+|..+++++..+. .+|+++.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~ 178 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALT 178 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 689999 5999999998777653 4655553
No 360
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.57 E-value=19 Score=37.49 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..||.|+|.|-+|-.++..|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999997653
No 361
>PRK08219 short chain dehydrogenase; Provisional
Probab=36.49 E-value=46 Score=30.68 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|-|.| .|.||+.+++.|.++ . +|+++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H---TLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeC
Confidence 4799999 899999999998865 3 6666654
No 362
>PLN02702 L-idonate 5-dehydrogenase
Probab=36.31 E-value=74 Score=32.27 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=18.4
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
+|.|+|-|.+|..+++++...
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~ 204 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAF 204 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHc
Confidence 789999999999998887765
No 363
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.22 E-value=39 Score=36.14 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||||.|.|.+|.-+...|.+. .+|++++-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~~----~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGKS----RQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhcC----CEEEEEeC
Confidence 5899999999999999987642 68888864
No 364
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.21 E-value=1.2e+02 Score=30.86 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=16.1
Q ss_pred eeEEEEcCCh-hHHHHHHHHHhC
Q 012940 87 LKVAINGFGR-IGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGr-IGR~vlr~l~~r 108 (453)
-+|.|.|.|. +||-+..+|.++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ 182 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA 182 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC
Confidence 3788888765 888887777654
No 365
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.04 E-value=36 Score=34.56 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=29.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Llk 132 (453)
|+||.+|.||.|.++.+-+..+. -++|+-.- +++....|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD~--n~~av~~~~~ 41 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYDV--NQTAVEELKD 41 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEcC--CHHHHHHHHh
Confidence 47999999999999999888764 57777642 3444444444
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=35.70 E-value=67 Score=32.78 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
+|.|+|.|.+|..+++++..+. .+ ++++.
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~ 218 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAG---CTTIIAVD 218 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 6999999999999988877653 43 55554
No 367
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=35.34 E-value=1e+02 Score=30.22 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+| .|.+|..+++++..+. +.++++..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~ 179 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG---YEVVASTG 179 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CeEEEEec
Confidence 789999 4999999998887653 57766654
No 368
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=35.30 E-value=65 Score=25.94 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=36.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHcccC--CCCcceeecccC--eEeecCCCCCcc
Q 012940 331 DLVVNVEKKGITAEDVNAAFRKAAEG--PLKGILAVCDVP--LVSVDFRCSDVS 380 (453)
Q Consensus 331 dltv~lek~~vt~eeI~~al~~aa~~--~lkgil~~~~~~--~VS~Df~~~~~S 380 (453)
.++++...+ ++.+++.+.|++-+.+ .+||++...+++ .+..++.++.+.
T Consensus 3 s~~~~~~~~-~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRP-FHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCC-CCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 466777877 8999999999877644 579999998775 455666766544
No 369
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.28 E-value=77 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||.|+|-|.||-.++..|.++. .++.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g---~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG---KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC---cEEEEEe
Confidence 7899999999999999998764 3444443
No 370
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=35.14 E-value=2.2e+02 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=22.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
+|.|+|.|.+|+.+++++..+. + .++++.
T Consensus 168 ~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~ 197 (339)
T cd08232 168 RVLVTGAGPIGALVVAAARRAG---AAEIVATD 197 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 7889999999999998876553 4 455553
No 371
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=35.12 E-value=48 Score=32.15 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=24.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||.|.| +|-||+.+++.|.++. +..+|++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 588999 8999999999887652 236787775
No 372
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.60 E-value=47 Score=34.94 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.1
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 176 GIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 176 gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
..|++|||||...+.+.|-.+++.|=
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCC
Confidence 48999999999999988877777654
No 373
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=34.59 E-value=61 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=26.2
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+||-|.| .|.||+.+++.|.++. .+|+++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 35899999 8999999999998763 57777644
No 374
>PRK14851 hypothetical protein; Provisional
Probab=34.59 E-value=28 Score=39.74 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=48.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc-CCCChhhhhhhh-ccccceeecCceEEEecCCeEEEC-CeEEEEE
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN-DSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVD-GKLIKVV 162 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn-d~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~l~v~-Gk~I~v~ 162 (453)
.-||+|+|.|-+|-.++..|.......+.| |. |..+...+-.-+ ...+..|+.+.++- ...-..+| +-+|.++
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEEE
Confidence 358999999999999999887543222322 22 112222222211 11233465543332 11111122 1234444
Q ss_pred eCC-CCCCCCccccCccEEEcCCCCC
Q 012940 163 SNR-DPLQLPWAELGIDIVIEGTGVF 187 (453)
Q Consensus 163 ~~~-dp~~l~W~~~gvDiVie~TG~f 187 (453)
.+. ++++++---.++|+||||+..|
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCC
Confidence 322 2233221113799999999865
No 375
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.57 E-value=1.7e+02 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=22.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+| .|.||+.+++++..+. .+++++.
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 799999 5999999999877653 5766654
No 376
>PRK09291 short chain dehydrogenase; Provisional
Probab=34.55 E-value=59 Score=30.77 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|-|.| .|.||+.+++.|.++. .+++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4789999 8999999999998763 57776654
No 377
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=34.20 E-value=2e+02 Score=30.16 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=22.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+|.|.|.|.||..+++++..+. ..++.+.+.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 6889999999999988876653 454444443
No 378
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=34.19 E-value=99 Score=35.31 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
||+|+|.|.+|+.+...+..+. .++|+-+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~ 334 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKA--GIPVRIK 334 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHc--CCeEEEE
Confidence 7999999999999998765321 2565444
No 379
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=34.06 E-value=53 Score=33.38 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=27.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
++||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 35899999 8999999999998764 58888854
No 380
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=33.94 E-value=41 Score=36.59 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|||+|+|++|+.+++.|.++. ++|++.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998764 58777765
No 381
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=33.50 E-value=82 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=24.2
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 89 VaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
|-|.| +|-||+.+++.|.++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 67899 9999999999999875 366666654
No 382
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=33.47 E-value=1.3e+02 Score=29.60 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.4
Q ss_pred EEEEcC-ChhHHHHHHHHHhC
Q 012940 89 VAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 89 VaInGf-GrIGR~vlr~l~~r 108 (453)
|+|.|. |.+|..++..|...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~ 21 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG 21 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC
Confidence 689998 99999999988754
No 383
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=33.47 E-value=57 Score=35.58 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|||+|.|.|.+|-.+.-+|.++. ...+|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 68999999999999888887652 246887774
No 384
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=33.31 E-value=43 Score=29.38 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC-CCChhhhhh
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASH 129 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd-~~~~~~~a~ 129 (453)
.||.|.|.|.+|-.+++.|...... ++.-+.+ ..+++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r 44 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNR 44 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCT
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeeccccc
Confidence 4899999999999999998754322 3333433 245555444
No 385
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=33.30 E-value=2e+02 Score=29.94 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=22.7
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 012940 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (453)
Q Consensus 175 ~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISa 208 (453)
.++|+|||++|.-...+.+-.+++.|.+.+++.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 3799999999865555666667765554455543
No 386
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.18 E-value=2.9e+02 Score=26.65 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=49.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~ 165 (453)
-+|.|.| .|.+|+.+++.+.... ..++++.. +.+....+.+ +|. + ...+.. .
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~----~g~---~-------~~~~~~--------~ 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVG--SPARAEGLRE----LGA---A-------EVVVGG--------S 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC---c-------EEEecc--------c
Confidence 3789999 5999999988887653 46666643 2232222222 110 0 010110 0
Q ss_pred CCCCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 166 dp~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
+ +...++|++++|+|.. ..+.+-.++..+.+.|.+
T Consensus 187 ~-----~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 E-----LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred c-----ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 0 1123699999999864 455566777777644434
No 387
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=33.09 E-value=56 Score=31.61 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCC
Confidence 588999 8999999999998753 47766643
No 388
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=32.95 E-value=55 Score=32.07 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 799999 8999999999998763 47777764
No 389
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=31.57 E-value=56 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=26.4
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhC----CCCCceEEEEcCC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGR----KDSPLDVVVVNDS 121 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r----~~~~ieiVaInd~ 121 (453)
|++||||+|-|.||-.-+-++.++ ..|..+|..|.|.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 457999999999998776555552 2355666667764
No 390
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.32 E-value=17 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=25.6
Q ss_pred cCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 012940 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (453)
Q Consensus 175 ~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps 210 (453)
.++|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 479999999996555566667777776555665544
No 391
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=31.16 E-value=1.1e+02 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-+|.|+| .|.||+.+++++.... ..++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 3799998 7999999999887653 577777553
No 392
>PRK07326 short chain dehydrogenase; Provisional
Probab=31.11 E-value=70 Score=29.82 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|-|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeC
Confidence 4799999 8999999999998763 57777753
No 393
>PRK06046 alanine dehydrogenase; Validated
Probab=31.05 E-value=69 Score=32.85 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=27.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-+|||.|+|.+||..++++... +.++.+.|-+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 5899999999999999988753 35788888776
No 394
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.04 E-value=1.4e+02 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.6
Q ss_pred EEEEcCChhHHHHHHHHHhC
Q 012940 89 VAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r 108 (453)
|+|+|.|.||..++-.|..+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~ 20 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK 20 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc
Confidence 68999999999999888765
No 395
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=30.86 E-value=98 Score=25.71 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHH-HHHHcccCCCCcceeecccCeEe
Q 012940 332 LVVNVEKKGITAEDVNA-AFRKAAEGPLKGILAVCDVPLVS 371 (453)
Q Consensus 332 ltv~lek~~vt~eeI~~-al~~aa~~~lkgil~~~~~~~VS 371 (453)
++++..+. .|..+|++ +|++|..-||-+.|+=.++.+.+
T Consensus 2 i~l~~~~~-~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~ 41 (78)
T PF02192_consen 2 IPLRVSRD-ATLSEIKEELWEEAKKYPLFSLLKDPSSYIFS 41 (78)
T ss_dssp EEEEEETT--BHHHHHHHHHHHGGGSTTCCCS--GGGEEEE
T ss_pred eEEEccCc-CcHHHHHHHHHHHHHhCChHHHhCCCCcEEEE
Confidence 45666777 79999987 78888888998888766655543
No 396
>PRK08017 oxidoreductase; Provisional
Probab=30.86 E-value=74 Score=30.06 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 699999 7999999999998763 46666643
No 397
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=30.60 E-value=1.9e+02 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=23.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+| .|.+|+.+++++.... .+++++.
T Consensus 148 ~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 148 TVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred EEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 789999 7999999988887653 5766664
No 398
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=30.55 E-value=1.7e+02 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=23.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+| .|.||+.+++++..+. .+++++..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~ 171 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG 171 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 799999 7999999998876553 56766643
No 399
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=30.51 E-value=23 Score=38.39 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhC
Q 012940 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGf-GrIGR~vlr~l~~r 108 (453)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 689999997 99999999888755
No 400
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=30.46 E-value=1.5e+02 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+| .|.+|+.+++.+.... ..++++.
T Consensus 165 ~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~ 194 (332)
T cd08259 165 TVLVTGAGGGVGIHAIQLAKALG---ARVIAVT 194 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 799999 7999999999887653 5666664
No 401
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=30.13 E-value=18 Score=39.66 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
-+|+|+|.|.+|-..+..|..+. .+|+.+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G---~~V~v~e 167 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG---HAVTIFE 167 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 48999999999999988887653 4666665
No 402
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=29.64 E-value=74 Score=33.06 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|+|.|-|..||.+.+++..+. ++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 48999999999999999887663 68777754
No 403
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=29.53 E-value=1.6e+02 Score=30.00 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.3
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
+|.|+|-|.+|..+++++..+
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHc
Confidence 789999999999998887665
No 404
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.39 E-value=87 Score=28.78 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
-||-|+|-|.+|...++.|.+.. -+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 38999999999999999988753 3666664
No 405
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=28.75 E-value=53 Score=36.07 Aligned_cols=130 Identities=15% Similarity=0.229 Sum_probs=67.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhc-cccceee----cCceEE-EecCCeEEECCeEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGT----FKADVK-IVDNETISVDGKLIK 160 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~Llk-yDS~~G~----f~~~v~-~~~~~~l~v~Gk~I~ 160 (453)
.+||++|+|..|+.+.+.|.++. ++|++-|.. ++...-+.+ ... .|- ...+++ ..+. |.--+.-|.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~--l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKK-EGNLPLYGFKDPEDFVLS--IQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhh-cCCcccccCCCHHHHHhc--CCCCCEEEE
Confidence 48999999999999999998764 688777753 222222221 000 010 000000 0000 000011111
Q ss_pred EEeCCCCCC--------CCccccCccEEEcCCCCC--CChhhHHHHHHcCCCEEEEeCCCCC-----CCCCeEEeccCcc
Q 012940 161 VVSNRDPLQ--------LPWAELGIDIVIEGTGVF--VDGPGAGKHIQAGAKKVIITAPAKG-----ADIPTYVVGVNEK 225 (453)
Q Consensus 161 v~~~~dp~~--------l~W~~~gvDiVie~TG~f--~s~e~a~~hl~aGAkkVIISaps~d-----~dvPtvV~gVN~~ 225 (453)
++ .+.+. ++--+ .-|++||++-.. .+++.+..+.+.|+ -.|.+|-.+ ..-|++.+|-+.+
T Consensus 79 ~v--~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~ 153 (493)
T PLN02350 79 LV--KAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFE 153 (493)
T ss_pred EC--CCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHH
Confidence 11 12111 12111 238999998664 44555666667888 367777311 1346889999988
Q ss_pred ccCc
Q 012940 226 DYDH 229 (453)
Q Consensus 226 ~~~~ 229 (453)
.|+.
T Consensus 154 a~~~ 157 (493)
T PLN02350 154 AYKN 157 (493)
T ss_pred HHHH
Confidence 8754
No 406
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.73 E-value=78 Score=32.01 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
|||+|.|.|.+|..+...|.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC
Confidence 4899999999999999988764
No 407
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=28.70 E-value=3.5e+02 Score=26.77 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+|.|.+|+.+++++..+. ++++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG---ARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEECC
Confidence 7899999999999999887653 67777743
No 408
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.48 E-value=2.6e+02 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=18.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r 108 (453)
=+|.|+|.|.||..+++++..+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~ 189 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR 189 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 3799999999999999887654
No 409
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.35 E-value=1e+02 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCce-EEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ie-iVaInd 120 (453)
+|.|.|-|.+|+.+++++..+. .. ++++..
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G---~~~v~~~~~ 201 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG---AERIIAMSR 201 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEECC
Confidence 6888999999999988876653 44 555543
No 410
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.05 E-value=66 Score=34.91 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCCCCh------hhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCccCCeEEecCCcchhhhhhHHHHHhhhcCe
Q 012940 185 GVFVDG------PGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258 (453)
Q Consensus 185 G~f~s~------e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~~~~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI 258 (453)
|..+|+ +.++...++|+|-+++++ .|-..|..+... . ..-|+-+|+-|.+--||
T Consensus 168 G~~rSr~~e~Il~ev~~Lv~~G~kEI~L~g-------------qdv~aYG~D~~~-----~--~~~l~~Ll~~l~~I~G~ 227 (437)
T COG0621 168 GKERSRPPEDILKEVKRLVAQGVKEIVLTG-------------QDVNAYGKDLGG-----G--KPNLADLLRELSKIPGI 227 (437)
T ss_pred CCccCCCHHHHHHHHHHHHHCCCeEEEEEE-------------EehhhccccCCC-----C--ccCHHHHHHHHhcCCCc
Confidence 666665 445667789998766653 333445433111 1 34588899999997799
Q ss_pred eEEEEEeeeccccc
Q 012940 259 VKGAMTTTHSYTGD 272 (453)
Q Consensus 259 ~~~~mTTiha~Tg~ 272 (453)
.++.++++|+.--+
T Consensus 228 ~riR~~~~~P~~~~ 241 (437)
T COG0621 228 ERIRFGSSHPLEFT 241 (437)
T ss_pred eEEEEecCCchhcC
Confidence 99999999996443
No 411
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=27.97 E-value=70 Score=32.96 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHhC
Q 012940 88 KVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGf-GrIGR~vlr~l~~r 108 (453)
||+|.|. |.||..++-.|..+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~ 22 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ 22 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC
Confidence 7999997 99999999887655
No 412
>PRK07023 short chain dehydrogenase; Provisional
Probab=27.83 E-value=82 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=24.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
++|-|.| .|.||+.+.+.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4899999 8999999999998763 4665553
No 413
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.74 E-value=87 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=24.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEEC
Confidence 4789999 8999999999998763 46666643
No 414
>PLN00198 anthocyanidin reductase; Provisional
Probab=27.62 E-value=83 Score=31.51 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=24.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 012940 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 86 ~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
+.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 35899999 9999999999998763 466555
No 415
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=27.61 E-value=1.2e+02 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=24.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+|.|+| .|.||+.+++++.... .+++++.+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~ 180 (341)
T cd08290 149 WVIQNGANSAVGQAVIQLAKLLG---IKTINVVRD 180 (341)
T ss_pred EEEEccchhHHHHHHHHHHHHcC---CeEEEEEcC
Confidence 789999 6999999999887653 677777654
No 416
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=27.61 E-value=2.2e+02 Score=28.15 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=66.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp 167 (453)
+|.|+|.|.+|+.+++++.... +.|+.+....+.+....+.++ |. . . + +.+.-... +..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~~----g~-~-~--------~--~~~~~~~~--~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKEL----GA-D-A--------V--NGGEEDLA--ELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHHh----CC-c-c--------c--CCCcCCHH--HHH
Confidence 6788899999999999887653 566665322122222222221 11 0 0 0 00000000 000
Q ss_pred CCCCccccCccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-ccCccCCeEEecCCcchhhhh
Q 012940 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLA 246 (453)
Q Consensus 168 ~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGAkkVIISaps~d~dvPtvV~gVN~~-~~~~~~~~IVSnaSCTTn~La 246 (453)
..+ ....++|++|+|.|.-...+....+++.+.+-+.++... + .+ +.+|.. .+... .+|..+-.++...+.
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~--~~---~~~~~~~~~~~~-~~i~g~~~~~~~~~~ 297 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P--LA---ASIDVERIIQKE-LSVIGSRSSTPASWE 297 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C--CC---cccCHHHHhhcC-cEEEEEecCchHhHH
Confidence 000 112368999999975333445556777666444444433 1 11 112222 12222 455555556666666
Q ss_pred hHHHHHhh
Q 012940 247 PFVKVMDE 254 (453)
Q Consensus 247 pvlk~L~d 254 (453)
-+++.+++
T Consensus 298 ~~~~~~~~ 305 (306)
T cd08258 298 TALRLLAS 305 (306)
T ss_pred HHHHHHhc
Confidence 66665543
No 417
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.49 E-value=65 Score=32.28 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|||-|.| +|- ||.+++.|.++. .++++-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s 29 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVT 29 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEE
Confidence 4788988 898 999999887653 566544
No 418
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=27.28 E-value=2.3e+02 Score=31.39 Aligned_cols=103 Identities=24% Similarity=0.309 Sum_probs=59.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhhccccceeecCceEEEecCCeEEECC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~G 156 (453)
-.|+.|=|||-+|....+.|.+.. =.+|+|.|. .+++.+..+ -..++++.+- ++....-.+
T Consensus 251 gkr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~~G~l~np~Gid~~eL~~~---~~~k~~i~~f----~~~~~~~~~ 320 (514)
T KOG2250|consen 251 GKRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDSKGVLINPDGIDIEELLDL---ADEKKTIKSF----DGAKLSYEG 320 (514)
T ss_pred ceEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcCceeEECCCCCCHHHHHHH---HHhhcccccc----ccccccCcc
Confidence 358999999999999988887643 367777664 234444332 2223332211 111111111
Q ss_pred eEEEEEeCCCCCCCCccccCccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 012940 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 157 k~I~v~~~~dp~~l~W~~~gvDiVie~T-G~f~s~e~a~~hl~aGAkkVII 206 (453)
... ..| -..|- ..+||.+=|+ ...++.+.|....+.|+| .|+
T Consensus 321 --~~~---~~~-~~~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~~-~Iv 363 (514)
T KOG2250|consen 321 --YIA---GLP-PWTLV-EKCDILVPCATQNEITGENAKALVAKGCK-YIV 363 (514)
T ss_pred --ccc---cCc-chhhH-hhCcEEeecCccCcccHhhHHHHHhcCCc-EEE
Confidence 011 111 12233 3689999887 557788999888888883 444
No 419
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=27.06 E-value=1.8e+02 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=21.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~i-eiVaI 118 (453)
-+|.|+|-|.+|+.+++++.... . .|+++
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVG---ARHVVIT 194 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 37899999999999988776542 4 45556
No 420
>PRK12320 hypothetical protein; Provisional
Probab=26.99 E-value=77 Score=36.39 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3899999 9999999999998763 58777764
No 421
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=26.91 E-value=2.8e+02 Score=29.44 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=45.9
Q ss_pred eEEEEcCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 88 kVaInGfGrIGR~-vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+|-++|.|.+|.. ++|.|..+. .+|.+ .|....+....|-+ . | |.+....+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~~-~D~~~~~~~~~l~~-----------------~-----g--i~~~~g~~ 52 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVSG-SDIAENATTKRLEA-----------------L-----G--IPIYIGHS 52 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEEE-ECCCcchHHHHHHH-----------------C-----c--CEEeCCCC
Confidence 4778999999998 899998764 46544 44311111112111 0 1 12211123
Q ss_pred CCCCCccccCccEEEcCCCCCCChhhHHHHHHcCC
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~e~a~~hl~aGA 201 (453)
++.+. +.|+||-+.|.-.+.+....+.+.|.
T Consensus 53 ~~~~~----~~d~vV~spgi~~~~p~~~~a~~~~i 83 (448)
T TIGR01082 53 AENLD----DADVVVVSAAIKDDNPEIVEAKERGI 83 (448)
T ss_pred HHHCC----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 33332 36888888887766665555556664
No 422
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=26.85 E-value=86 Score=31.95 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=72.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~d 166 (453)
+||+|.|.|.+|..++-++..+.. .+|+.+.-..+... +..+ |-.+.. ... . ..+ .|.. ..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~-g~a~--d~~~~~---~~~---~----~~~-~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQ-GKAL--DMYEAS---PVG---G----FDT-KVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhH-HHHH--hhhhhh---hcc---C----CCc-EEEe--cCC
Confidence 489999999999999998887532 25544432212211 1111 211100 000 0 111 2332 233
Q ss_pred CCCCCccccCccEEEcCCCCCCCh------------hhHH----HHHHc--CCCEEEEeCCCCCCCCCe-EEeccCcccc
Q 012940 167 PLQLPWAELGIDIVIEGTGVFVDG------------PGAG----KHIQA--GAKKVIITAPAKGADIPT-YVVGVNEKDY 227 (453)
Q Consensus 167 p~~l~W~~~gvDiVie~TG~f~s~------------e~a~----~hl~a--GAkkVIISaps~d~dvPt-vV~gVN~~~~ 227 (453)
.+++ .+.|+||-|.|.-... +... .-.+. .++-+++|+|. |+-+ ++... ..+
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~--sg~ 134 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQK--SGF 134 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHH--HCc
Confidence 3333 3789999999953321 1111 11122 23334447774 2211 11111 112
Q ss_pred CccCCeEEecCCcchhhhhhHHHHHhhhcCeeEE
Q 012940 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKG 261 (453)
Q Consensus 228 ~~~~~~IVSnaSCTTn~Lapvlk~L~d~fGI~~~ 261 (453)
. +++|| +.||.---+.+-+.|.+.+|+..-
T Consensus 135 ~--~~rvi--G~g~~lds~R~~~~la~~l~v~~~ 164 (305)
T TIGR01763 135 P--KERVI--GQAGVLDSARFRTFIAMELGVSVQ 164 (305)
T ss_pred C--HHHEE--EeccchHHHHHHHHHHHHhCcCHH
Confidence 2 25777 456666667888888888887643
No 423
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.54 E-value=78 Score=33.54 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|||.|.|+|+.|+.++|.|. +. .+|++.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G---~~V~~~ 28 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF---GGVDIF 28 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC---CeEEEE
Confidence 47999999999999999998 64 454443
No 424
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=26.43 E-value=53 Score=34.93 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
..+|||.|||..|+.+.+-+....
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 479999999999999998887653
No 425
>PRK07411 hypothetical protein; Validated
Probab=26.29 E-value=34 Score=36.21 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r 108 (453)
..||.|+|.|-+|-.++..|..-
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~ 60 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA 60 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc
Confidence 45899999999999999988754
No 426
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.22 E-value=1.1e+02 Score=26.95 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 89 VaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|+|.|.|.||..+.-.|.+.. .+|..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 789999999999998887643 46655654
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=26.08 E-value=81 Score=32.28 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRK 109 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~ 109 (453)
|||+|.|.|.||-.+.-.|....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 58999999999999988777653
No 428
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.70 E-value=65 Score=33.16 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 012940 87 LKVAINGF-GRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInGf-GrIGR~vlr~l~~r 108 (453)
|||+|.|. |.||..++-.|..+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~ 23 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN 23 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 59999997 99999999888755
No 429
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=25.67 E-value=84 Score=35.63 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.||+|+|+|.+|+.+++.|..... ..+|++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 489999999999999999986531 135666653
No 430
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.25 E-value=3.6e+02 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaIn 119 (453)
+|.|+|.|.||..+++++..+. . .|+++.
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~~ 235 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG---ASKVIAFE 235 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEc
Confidence 6899999999999998887653 4 465553
No 431
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=25.10 E-value=1e+02 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-||.|.|.|.+||.++++|..+.. -+|..+|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 479999999999999999987642 356666653
No 432
>PRK08223 hypothetical protein; Validated
Probab=25.04 E-value=39 Score=34.63 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r 108 (453)
.-||.|+|.|-+|-.++..|..-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh
Confidence 35899999999999999988754
No 433
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.99 E-value=1.1e+02 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 8999999999998764 46666654
No 434
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=24.90 E-value=3.5e+02 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=22.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+| .|.||..+++++..+. ..++.+.
T Consensus 192 ~vlV~Ga~g~vG~~ai~~ak~~G---~~vi~~~ 221 (398)
T TIGR01751 192 NVLIWGAAGGLGSYATQLARAGG---GNPVAVV 221 (398)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcC---CeEEEEc
Confidence 789999 5999999988876553 5655553
No 435
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=24.87 E-value=3e+02 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=23.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCc-eEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~i-eiVaInd 120 (453)
+|.|+| .|.||..+++++..+. . +|+++..
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~ 188 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLG---CSRVVGICG 188 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 799999 5999999998876553 4 6777653
No 436
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.87 E-value=1.1e+02 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=25.3
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|+..|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG---FDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEec
Confidence 333588889 9999999999998763 47776653
No 437
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=24.75 E-value=92 Score=32.02 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.8
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|+.+|.|+|-|.-|-.+++.|.++ .++.+|+.|..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 455899999999999999988764 35678877864
No 438
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=24.66 E-value=1.5e+02 Score=29.64 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.3
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 012940 88 KVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r 108 (453)
+|.|+|.|.+|..+++.+...
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~ 198 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKAL 198 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHc
Confidence 689999999999998887755
No 439
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.42 E-value=2.9e+02 Score=27.56 Aligned_cols=30 Identities=27% Similarity=0.159 Sum_probs=22.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ie-iVaIn 119 (453)
-+|.|+|.|.+|..+++.+.... .. ++++.
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G---~~~v~~~~ 194 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG---ATKVVVTD 194 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37899999999999998886543 45 55553
No 440
>PRK07236 hypothetical protein; Provisional
Probab=24.28 E-value=1.1e+02 Score=31.59 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=26.2
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|+++|.|+|-|..|-.+...|..+. ++++.+..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G---~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG---WDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC---CCEEEEec
Confidence 34679999999999999888887643 66666653
No 441
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.21 E-value=64 Score=33.97 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
..+|||+|.|-+|..-.+..-... ++|++|...
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG---~rV~vis~~ 214 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMG---MRVTVISTS 214 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhC---cEEEEEeCC
Confidence 358999998779988777665543 799999765
No 442
>PRK10537 voltage-gated potassium channel; Provisional
Probab=24.05 E-value=98 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
=.|-|.|+|++|+.+++.|.++. .+++.|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 35999999999999999987653 5666665
No 443
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=24.00 E-value=95 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred EEEEEEEccCCCCHHHHHHHHHHcccC--CCCcceeeccc-CeEeecCCCCCcc
Q 012940 330 VDLVVNVEKKGITAEDVNAAFRKAAEG--PLKGILAVCDV-PLVSVDFRCSDVS 380 (453)
Q Consensus 330 vdltv~lek~~vt~eeI~~al~~aa~~--~lkgil~~~~~-~~VS~Df~~~~~S 380 (453)
..++++.+++ ++.+.+.+.|.+.+.+ ..||++.+.++ .....+..+..+.
T Consensus 2 ~s~~~~~~~p-~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRP-FDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS--B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 3578889998 9999999999985544 46999999877 3444555555433
No 444
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=23.86 E-value=60 Score=32.78 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=22.0
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEc
Q 012940 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 86 ~ikVaInGfGrIGR~-vlr~l~~r~~~~ieiVaIn 119 (453)
.+.|+++|+||.||. ++|+.... ++.-+|.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~----~~cs~i~ 40 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVV----VACSAIS 40 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchh----eeehhhh
Confidence 368999999999999 67776532 5554554
No 445
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=23.84 E-value=95 Score=31.22 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRK 109 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~ 109 (453)
.||-|.| +|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 3899999 9999999999998763
No 446
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=23.78 E-value=1e+02 Score=30.97 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGR 108 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r 108 (453)
|||-|-| .|.||+.+++.|.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~ 23 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN 23 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh
Confidence 4899999 899999999999876
No 447
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=23.75 E-value=99 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|.|..|+.+...+.... ++|+.++-
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~ 36 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAG---HQVLLYDI 36 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 7999999999999999887653 67776653
No 448
>PRK06924 short chain dehydrogenase; Provisional
Probab=23.69 E-value=1.2e+02 Score=28.69 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEeC
Confidence 689999 8999999999998763 46666643
No 449
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=23.69 E-value=1e+02 Score=33.90 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
||||+|.|.+|+-+.+.+.... ++|+..+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~ 38 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAG---HTVLLYDA 38 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 6999999999999999887543 68776653
No 450
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=23.60 E-value=54 Score=35.99 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=12.1
Q ss_pred eeEEEEcCChhHH
Q 012940 87 LKVAINGFGRIGR 99 (453)
Q Consensus 87 ikVaInGfGrIGR 99 (453)
.+|+|+|+|.||+
T Consensus 37 KtIaIIGyGSqG~ 49 (487)
T PRK05225 37 KKIVIVGCGAQGL 49 (487)
T ss_pred CEEEEEccCHHHH
Confidence 4899999999999
No 451
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.59 E-value=98 Score=34.79 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+||.|-| .|-||+.+++.|.++. ..+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 5899999 8999999999998642 368888864
No 452
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=23.57 E-value=1.3e+02 Score=29.53 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=23.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|.| .|.+|+.+++.+..+. .+++++..
T Consensus 143 ~vlI~g~~g~ig~~~~~lak~~G---~~v~~~~~ 173 (327)
T PRK10754 143 QFLFHAAAGGVGLIACQWAKALG---AKLIGTVG 173 (327)
T ss_pred EEEEEeCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 789997 8999999988876653 57776653
No 453
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.55 E-value=1.2e+02 Score=28.27 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=24.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
++|-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5899999 8999999999998764 4666654
No 454
>PLN00203 glutamyl-tRNA reductase
Probab=23.51 E-value=89 Score=34.60 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
.||+|+|.|.+|+.+++.|..+.. -+|+.+|..
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeCC
Confidence 589999999999999999987632 256667653
No 455
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=23.42 E-value=1.2e+02 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=24.2
Q ss_pred ceeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 012940 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 85 m~ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|+.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 445899999 8999999999998763 465543
No 456
>PLN02583 cinnamoyl-CoA reductase
Probab=23.19 E-value=1.2e+02 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=24.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 689999 8999999999998764 57777653
No 457
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=23.16 E-value=2.6e+02 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
-+|.|+| .|.+|..+++++.... .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 3789999 7999999998876653 57766654
No 458
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=23.11 E-value=1.3e+02 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=21.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~i-eiVaI 118 (453)
+|.|+|.|.+|+.+++++.... . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 6899999999999988887553 4 46666
No 459
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=22.83 E-value=72 Score=31.39 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=26.7
Q ss_pred CccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 012940 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (453)
Q Consensus 176 gvDiVie~TG~f~s~e~a~~hl~aGAkkVII 206 (453)
++|+|++||+...-.+.+.+.+++|. .|++
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGk-hVl~ 66 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGK-DLLI 66 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCC-CEEE
Confidence 58999999999999999999999996 4555
No 460
>PRK07578 short chain dehydrogenase; Provisional
Probab=22.70 E-value=1.6e+02 Score=26.96 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=22.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
++-|.| .|.||+.+.+.|.++ .+|+.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~----~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR----HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc----CcEEEEe
Confidence 788999 899999999998765 3666554
No 461
>PRK08618 ornithine cyclodeaminase; Validated
Probab=22.68 E-value=1.4e+02 Score=30.57 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-+|+|.|.|.+||..++++... ..++-|.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc--CCccEEEEECC
Confidence 4799999999999999887643 12555555544
No 462
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.61 E-value=1.2e+02 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998764 47777754
No 463
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.51 E-value=1.3e+02 Score=28.72 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
++-|.| .|.||+.+.+.|.++. ..|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 689999 8999999999998763 4666664
No 464
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=22.45 E-value=1.1e+02 Score=29.65 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=23.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
||-|.| .|-||+.+++.|.++. .+|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998764 4666664
No 465
>PRK15076 alpha-galactosidase; Provisional
Probab=22.34 E-value=68 Score=34.47 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=11.2
Q ss_pred eeEEEEcCChhH
Q 012940 87 LKVAINGFGRIG 98 (453)
Q Consensus 87 ikVaInGfGrIG 98 (453)
+||+|+|.|.+|
T Consensus 2 ~KIaIIGaGsvg 13 (431)
T PRK15076 2 PKITFIGAGSTV 13 (431)
T ss_pred cEEEEECCCHHH
Confidence 699999999998
No 466
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.34 E-value=85 Score=34.09 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.6
Q ss_pred cceeeEEEEcCChhHHHHHHHHHhC
Q 012940 84 VAKLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 84 ~m~ikVaInGfGrIGR~vlr~l~~r 108 (453)
.|+.+|+|+|.|..|-..+|.|.+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC
Confidence 3467899999999999999999765
No 467
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=22.18 E-value=93 Score=29.88 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=23.5
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 89 VaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
|-|-| +|.||+.+++.|.++. .+|++++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35788 8999999999998753 68888775
No 468
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=22.14 E-value=1.3e+02 Score=27.29 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
++.|.|.|..|+.+++.|..+ .++++++=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEc
Confidence 478999999999999998643 478887765
No 469
>COG3731 SrlB Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.88 E-value=1.4e+02 Score=27.08 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhhccccceeecCceEEEecCCeEEECCeEEEEEeCCCCCCCCcccc
Q 012940 96 RIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (453)
Q Consensus 96 rIGR~vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~l~v~Gk~I~v~~~~dp~~l~W~~~ 175 (453)
+||-.+...+++. | ++-.++....+..-|-+-+ .||-..+... .|+.|.++|+.+.|..--+-.+-...++
T Consensus 11 ~IG~~v~~~led~----m-lItF~~g~P~dl~e~sviH--~h~e~~~~l~--~G~~l~lg~~~y~ItaVG~~an~nl~El 81 (123)
T COG3731 11 RIGPEVADALEDK----M-LITFRDGAPADLAEYSVIH--KHGELQEALQ--PGDRLTLGGHCYPITAVGSVANDNLREL 81 (123)
T ss_pred EecHhHHhhhcCC----E-EEEeCCCCChHhhheeEee--ecCcccccCC--CCCEEEECCceEEEEEechHHHHHHHhh
Confidence 6898888888753 2 3445554322222222211 1455555555 5899999999888866444333333344
Q ss_pred C-ccEEEcC
Q 012940 176 G-IDIVIEG 183 (453)
Q Consensus 176 g-vDiVie~ 183 (453)
| +-+.|+.
T Consensus 82 GHvti~FdG 90 (123)
T COG3731 82 GHVTIRFDG 90 (123)
T ss_pred CcEEEEECC
Confidence 4 4555553
No 470
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=21.64 E-value=1.1e+02 Score=32.19 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEE
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV 117 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVa 117 (453)
+||+|.|.|.=|..+...|.+.. .++.+-+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~ 31 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWG 31 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEe
Confidence 58999999999999999988653 2344433
No 471
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=21.62 E-value=1.2e+02 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 788999 8999999999998763 58887754
No 472
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=21.44 E-value=1.3e+02 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=21.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
+|+|.|||.-|+.....|.+. .++|+.-...
T Consensus 6 ~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~ 36 (165)
T PF07991_consen 6 TIAVIGYGSQGHAHALNLRDS---GVNVIVGLRE 36 (165)
T ss_dssp EEEEES-SHHHHHHHHHHHHC---C-EEEEEE-T
T ss_pred EEEEECCChHHHHHHHHHHhC---CCCEEEEecC
Confidence 799999999999988888664 4776644443
No 473
>PRK05884 short chain dehydrogenase; Provisional
Probab=21.44 E-value=1.3e+02 Score=28.38 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|+-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g---~~v~~~~ 31 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG---HKVTLVG 31 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 789999 8999999999998753 4666554
No 474
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=21.32 E-value=2.6e+02 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+| .|.+|+.+++++.... ..+++++..
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G--~~~v~~~~~ 183 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLT--GLTVIATAS 183 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC--CcEEEEEcC
Confidence 789999 7999999998887653 157766654
No 475
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=21.18 E-value=2.1e+02 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|.|-|.+|+.+++++.... ...|+++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g--~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALT--PATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 6999997779999998886542 257776654
No 476
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=21.17 E-value=4.7e+02 Score=25.93 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 88 kVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
+|.|+|.|.+|+.+++++..+. ...++++.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~ 198 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYS--PSKIIMVD 198 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CCeEEEEc
Confidence 7889999999999988776553 14566653
No 477
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.12 E-value=1.5e+02 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
.+|.|.| .|.||+.+++.|..+. -+|+.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 4899999 7999999999988653 36666654
No 478
>PRK14852 hypothetical protein; Provisional
Probab=21.10 E-value=80 Score=37.67 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 012940 86 KLKVAINGFGRIGRNFLRCWHGR 108 (453)
Q Consensus 86 ~ikVaInGfGrIGR~vlr~l~~r 108 (453)
.-||+|+|.|-+|-.++..|...
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra 354 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART 354 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc
Confidence 45899999999999999988754
No 479
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=20.72 E-value=2e+02 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=24.6
Q ss_pred eeEEEEcCCh-hHHHHHHHHHhCCCCCceEEEEcCC
Q 012940 87 LKVAINGFGR-IGRNFLRCWHGRKDSPLDVVVVNDS 121 (453)
Q Consensus 87 ikVaInGfGr-IGR~vlr~l~~r~~~~ieiVaInd~ 121 (453)
-||.|+|.|. +|+.+++.|.++. ..|+.+|..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 4899999998 5998999998763 366666653
No 480
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.59 E-value=1.5e+02 Score=27.80 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 789999 8999999999998764 47766654
No 481
>PRK05586 biotin carboxylase; Validated
Probab=20.57 E-value=1.2e+02 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 87 ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
-||+|.|-|.+|+.+++.+.+.. +++|++-
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG---~~~v~v~ 32 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMG---IETVAVY 32 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC---CcEEEEc
Confidence 48999999999999999998763 7888884
No 482
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=20.47 E-value=5.5e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 012940 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (453)
Q Consensus 88 kVaInG-fGrIGR~vlr~l~~r~~~~ieiVaInd 120 (453)
+|.|+| .|.+|..+++++..+. .+++++..
T Consensus 145 ~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~ 175 (324)
T cd08244 145 VVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAG 175 (324)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 699999 7999999998887653 57766643
No 483
>PRK08163 salicylate hydroxylase; Provisional
Probab=20.22 E-value=1.3e+02 Score=30.63 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=24.6
Q ss_pred ceeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEc
Q 012940 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (453)
Q Consensus 85 m~ikVaInGfGrIGR~vlr~l~~r~~~~ieiVaIn 119 (453)
|+++|.|+|-|..|-.++.+|... .+++..+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~---g~~v~v~E 34 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ---GIKVKLLE 34 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC---CCcEEEEe
Confidence 457999999999999888887654 25665564
No 484
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=20.17 E-value=1.6e+02 Score=27.56 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=23.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 012940 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (453)
Q Consensus 87 ikVaInG-fGrIGR~vlr~l~~r~~~~ieiVaI 118 (453)
|+|-|.| .|-||+.+.+.|.++. ....++..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEEE
Confidence 3789999 9999999999998762 23454443
No 485
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=20.11 E-value=1.2e+02 Score=27.59 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=30.2
Q ss_pred eeEEEEcCChhHHH---HHHHHHhCCCCCceEEEEcCCCChhhhhhhhcccc
Q 012940 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS 135 (453)
Q Consensus 87 ikVaInGfGrIGR~---vlr~l~~r~~~~ieiVaInd~~~~~~~a~LlkyDS 135 (453)
|||--.|.|+++|- ++.-|.++...+.-|++|+.. +.+....|-++|.
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~-~~~~~~~L~~qd~ 51 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPR-SVDAIDALNEQDG 51 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHC-CCHHHHHHHCCTC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEec-CchHHHHhhcCCC
Confidence 58899999999999 776666554456788888764 3333333334443
Done!