RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012940
(453 letters)
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 834 bits (2157), Expect = 0.0
Identities = 401/451 (88%), Positives = 422/451 (93%), Gaps = 9/451 (1%)
Query: 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFD 62
+H+ALA SRIPA TR+PSK +H KRL+VAEF+GLRA++ T+A AR+ASFFD
Sbjct: 1 THAALASSRIPATTRLPSKASH--------KRLEVAEFSGLRASSCVTFAKNAREASFFD 52
Query: 63 AVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122
V +QL PK AGS PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG
Sbjct: 53 VVASQLAPK-VAGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 111
Query: 123 GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIE 182
GVKNASHLLKYDS+LGTFKADVKIVD+ETISVDGK IKVVSNRDPL+LPWAELGIDIVIE
Sbjct: 112 GVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIE 171
Query: 183 GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242
GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DYDHEVANIVSNASCTT
Sbjct: 172 GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231
Query: 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK 302
NCLAPFVKV+DEE GIVKG MTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK
Sbjct: 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK 291
Query: 303 AVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGIL 362
AVSLV+PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA+GPLKGIL
Sbjct: 292 AVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGIL 351
Query: 363 AVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
AVCDVPLVSVDFRCSDVSSTID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA K
Sbjct: 352 AVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAK 411
Query: 423 WPGVAAGGSGDPLEDFCQTNPADEECKVYEA 453
WPG AA GSGDPLEDFC+TNPADEECKVY+A
Sbjct: 412 WPGGAAAGSGDPLEDFCKTNPADEECKVYDA 442
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 651 bits (1681), Expect = 0.0
Identities = 295/387 (76%), Positives = 325/387 (83%), Gaps = 7/387 (1%)
Query: 37 VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGR 96
+EF+GL++++ T+ + T V++ + T AK+KVAINGFGR
Sbjct: 15 FSEFSGLKSSSAVTFGKRSDS----LDFVVFATSAVSSSGGARRAVTEAKIKVAINGFGR 70
Query: 97 IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156
IGRNFLRCWHGRKDSPLDVV +ND+GGVK ASHLLKYDS LGTF ADVK V ++ ISVDG
Sbjct: 71 IGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDG 130
Query: 157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP 216
K+IKVVS+R+PL LPW ELGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIP
Sbjct: 131 KVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP 189
Query: 217 TYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLL 276
TYVVGVN DY H I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQRLL
Sbjct: 190 TYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLL 248
Query: 277 DASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNV 336
DASHRDLRRARAAALNIVPTSTGAAKAV+LV+P LKGKLNGIALRVPTPNVSVVDLVV V
Sbjct: 249 DASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQV 308
Query: 337 EKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 396
EKK AE+VNAAFR AAE LKGILAVCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMV
Sbjct: 309 EKK-TFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMV 367
Query: 397 KVVAWYDNEWGYSQRVVDLAHLVATKW 423
KVVAWYDNEWGYSQRVVDLA +VA KW
Sbjct: 368 KVVAWYDNEWGYSQRVVDLADIVANKW 394
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 536 bits (1383), Expect = 0.0
Identities = 241/337 (71%), Positives = 281/337 (83%), Gaps = 2/337 (0%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
++VAINGFGRIGRNFLRCW GR++S L++V +ND+ + +HLLKYDS+LG AD+
Sbjct: 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+N +I+V+GK IK VS+R+PL LPW E GID++IE TGVFV GA KHIQAGAKKV+I
Sbjct: 62 DEN-SITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAP KG DI TYVVGVN +YDHE NI+SNASCTTNCLAP KV+ + GI+KG MTTT
Sbjct: 121 TAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTT 180
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326
HSYTGDQR+LDASHRDLRRARAAA+NIVPTSTGAAKAV+LV+P+LKGKLNGIALRVPTPN
Sbjct: 181 HSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240
Query: 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
VSVVDLVV VEK+ IT E VN + A+EGPLKGIL D+PLVS D+R +D SS +D+S
Sbjct: 241 VSVVDLVVQVEKRTIT-EQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDAS 299
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
LTMVMG DMVKV+AWYDNEWGYSQRVVDLA LVA KW
Sbjct: 300 LTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKW 336
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 473 bits (1220), Expect = e-167
Identities = 191/330 (57%), Positives = 237/330 (71%), Gaps = 7/330 (2%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
KV INGFGRIGR LR + + L+VV +ND ++ ++LLKYDS+ G F+ +V
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTAD 60
Query: 148 DNETISVDGKLIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
++ + V+GK + V + RDP LPW LG+DIVIE TG F D H++AGAKKV+I
Sbjct: 61 ED-GLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP+KG D+ T V GVN +YD IVSNASCTTNCLAP KV+DE GIV G MTT
Sbjct: 120 SAPSKG-DVKTIVYGVNHDEYDPSER-IVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTV 177
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326
HSYT DQ L+D H+DLRRARAAALNI+PTSTGAAKA+ V+P+L GKL G+A+RVPTPN
Sbjct: 178 HSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 237
Query: 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
VS+VDLVVN+EK +T E+VNAA ++AAEG LKG+L + LVS DF S SS +D++
Sbjct: 238 VSLVDLVVNLEKD-VTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPYSSIVDAT 296
Query: 387 LTMVMGDD--MVKVVAWYDNEWGYSQRVVD 414
T V G +VKVVAWYDNEWGYS RVVD
Sbjct: 297 ATKVTGLGDSLVKVVAWYDNEWGYSNRVVD 326
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 462 bits (1191), Expect = e-163
Identities = 193/337 (57%), Positives = 244/337 (72%), Gaps = 5/337 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
K KVAINGFGRIGR R K+S ++V +N S + +HL+KYD++ G F V+
Sbjct: 2 KTKVAINGFGRIGRMVFR--KAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ + + VDGK I++++NRDP +LPW +LGIDIVIE TG F A H++AGAKKVI
Sbjct: 60 AFE-DHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
+TAP K D+ T VVGVNE D E I+SNASCTTNCLAP VKV+DE+ GI G MTT
Sbjct: 119 LTAPGKNEDV-TIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTT 177
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA++ V+P L GKL+G+ALRVPTP
Sbjct: 178 VHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVS+VDLVV+V K+ +T E++N AF+ AA G LKGIL + PLVS+DF + S+ ID
Sbjct: 238 NVSLVDLVVDV-KRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDG 296
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMVMGD VKV+AWYDNEWGYS RVVDL LVA +
Sbjct: 297 LSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADE 333
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 461 bits (1188), Expect = e-162
Identities = 195/340 (57%), Positives = 244/340 (71%), Gaps = 6/340 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
+KVAINGFGRIGR R R ++VV +ND +HLLKYDS+ G F +V+
Sbjct: 1 MIKVAINGFGRIGRLVARAALERDGD-IEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKV 204
V ++ + V+GK IKV++ RDP LPWA+LG+DIV+E TG F A KH++A GAKKV
Sbjct: 60 -VKDDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKV 118
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+I+AP K D+ T V GVN YD IVSNASCTTNCLAP KV+++ GI KG MT
Sbjct: 119 LISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMT 176
Query: 265 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
T H+YT DQ+L+D H+DLRRARAAALNI+PTSTGAAKAV LV+P+LKGKL G+A+RVPT
Sbjct: 177 TVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
PNVSVVDL V +EK+ +T E++NAA + A+E LKGIL + PLVS DF SS D
Sbjct: 237 PNVSVVDLTVELEKE-VTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFD 295
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWP 424
+S T+V+G ++VK+VAWYDNEWGYS RVVDL +VA
Sbjct: 296 ASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKALK 335
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 359 bits (923), Expect = e-121
Identities = 183/413 (44%), Positives = 246/413 (59%), Gaps = 14/413 (3%)
Query: 5 SALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAV 64
+A AP+ + S ++ ++ + + + AR A
Sbjct: 10 AATAPAAAARGSDFSSSSSDPSKVSSVGFSSSLSFSGSSSGASSSLQSCSARSVQPIKAT 69
Query: 65 TAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-G 123
+ P V +K + K K+ INGFGRIGR LR R D ++VV VND
Sbjct: 70 ATEAPPAV------LKSSSSGKTKIGINGFGRIGRLVLRIATSRDD--IEVVAVNDPFID 121
Query: 124 VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG 183
K +++ KYDS G FK + +VD+ T+ ++GK IKV S RDP ++PW + G + V+E
Sbjct: 122 AKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVES 181
Query: 184 TGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243
+GVF A H++ GAKKV+I+AP+ AD P +VVGVNEK Y + NIVSNASCTTN
Sbjct: 182 SGVFTTVEKASAHLKGGAKKVVISAPS--ADAPMFVVGVNEKTYKPNM-NIVSNASCTTN 238
Query: 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAK 302
CLAP KV+ EE GI++G MTT H+ T Q+ +D S +D R R A+ NI+P+STGAAK
Sbjct: 239 CLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK 298
Query: 303 AVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGIL 362
AV V+P+L GKL G+A RVPTPNVSVVDL +EK + EDV AA + A+EGPLKGIL
Sbjct: 299 AVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSA-SYEDVKAAIKYASEGPLKGIL 357
Query: 363 AVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
D +VS DF SS D+ + + +K+V+WYDNEWGYS RV+DL
Sbjct: 358 GYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDL 410
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 324 bits (832), Expect = e-108
Identities = 163/339 (48%), Positives = 215/339 (63%), Gaps = 10/339 (2%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR R R+D ++VV +ND + +LLKYDS+ G+ A+V +
Sbjct: 4 KLGINGFGRIGRLVFRAALERED--VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + + K + V +DP +PW + G+D+V E TGVF+ A H++ GAKKVI+
Sbjct: 62 TD-GFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+AP K D P YV+GVN YD IVSNASCTTNCLAP KV++++ GIV+G MTT
Sbjct: 121 SAPPKD-DTPIYVMGVNHTQYDKSQR-IVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTV 178
Query: 267 HSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323
H+ T +Q +D + D R R A +NI+P STGAAKAV V+P+L GKL G+A RVP
Sbjct: 179 HASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 238
Query: 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
P+VSVVDL + K E++ AA +KAAEGPLKGIL D +VS DF SS
Sbjct: 239 VPDVSVVDLTCKLAKPA-KYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIF 297
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D + + D VK+V+WYDNEWGYS R++DLAH + K
Sbjct: 298 DVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 323 bits (829), Expect = e-108
Identities = 151/335 (45%), Positives = 212/335 (63%), Gaps = 7/335 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADV 144
+KV INGFGRIGR LR + L+ V +ND G +HLL++DS+ G + +V
Sbjct: 2 TIKVGINGFGRIGRLALRAAWDWPE--LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV 59
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + I ++GK I+ N+ W+ G D+VIE +GV ++ G K+V
Sbjct: 60 -TAEGDAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRV 116
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
++TAP K + V+GVN+ +D + IV+ ASCTTNCLAP VKV+ E+LGI G+MT
Sbjct: 117 VVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMT 176
Query: 265 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
T H T Q +LDA H+DLRRARA ++++PT+TG+A A++ + P+LKGKLNG A+RVP
Sbjct: 177 TIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
N S+ D V VE + T E+VNA ++AAEG LKGIL + PLVS+D++ SS +D
Sbjct: 237 ANASLTDCVFEVE-RDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVD 295
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 419
+ TMV+ VK+ AWYDNEWGY+ R +LA V
Sbjct: 296 ALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKV 330
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 303 bits (779), Expect = e-100
Identities = 139/331 (41%), Positives = 203/331 (61%), Gaps = 8/331 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN LR + GR+ + VV +N+ + +HLLKYD+ G F DV
Sbjct: 2 IRVAINGFGRIGRNVLRALYESGRRAE-ITVVAINELADAEGMAHLLKYDTSHGRFAWDV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+++ RD LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 61 R-QERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKV 119
Query: 205 IITAPAKGADI-PTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263
+ + P D+ T V GVN E IVSNASCTTNC+ P +K++D+ GI G +
Sbjct: 120 LFSHPG-SNDLDATVVYGVNHDQLRAE-HRIVSNASCTTNCIIPVIKLLDDAFGIESGTV 177
Query: 264 TTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323
TT HS DQ+++DA H DLRR RAA+ +I+P T A ++ + PQ + I++RVP
Sbjct: 178 TTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVP 237
Query: 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
T NV+ +DL V V+K + +VN +KAA+G GI+ ++PLVS+DF S+ +
Sbjct: 238 TINVTAIDLSVTVKKP-VKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIV 296
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVD 414
D + T V G ++K + W DNEWG++ R++D
Sbjct: 297 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 327
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 292 bits (750), Expect = 1e-96
Identities = 142/328 (43%), Positives = 199/328 (60%), Gaps = 4/328 (1%)
Query: 88 KVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+VAINGFGRIGRN LR + + + + VV +N+ +HLLKYD+ G F +V+
Sbjct: 1 RVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVR- 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV+
Sbjct: 60 QDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLF 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+ P T V GVN+ E IVSNASCTTNC+ P +K++D+ GI G +TT
Sbjct: 120 SHPGASDLDATIVYGVNQDQLRAE-HRIVSNASCTTNCIVPVIKLLDDAYGIESGTITTI 178
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326
HS DQ+++DA H DLRR RAA+ +I+P T A + PQ + IA+RVPT N
Sbjct: 179 HSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPTVN 238
Query: 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
V+ +DL V V KK + A +VN +KAA+G L+GI+ ++PLVSVDF S+ +D +
Sbjct: 239 VTAIDLSVTV-KKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHDPHSAIVDGT 297
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVD 414
T V G +VK + W DNEWG++ R++D
Sbjct: 298 QTRVSGAHLVKTLVWCDNEWGFANRMLD 325
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 291 bits (746), Expect = 6e-96
Identities = 163/334 (48%), Positives = 220/334 (65%), Gaps = 9/334 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V++
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D I V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 61 KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K + P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 120 TGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 176
Query: 267 HSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV V+P+L GKL G+A RVPTP
Sbjct: 177 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 236
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDL V +EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 237 NVSVVDLTVRLEKAA-TYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDA 295
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHL 418
+ + D+ VK+V+WYDNE GYS +V+DL AH+
Sbjct: 296 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHI 329
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 290 bits (743), Expect = 3e-95
Identities = 161/333 (48%), Positives = 222/333 (66%), Gaps = 9/333 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFK-AD 143
K+++ INGFGRIGR R R D +++V VND + +++ KYDS+ G +K +
Sbjct: 5 KIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
+K+ D++T+ K + V R+P +PW E G D V+E TGVF D A H++ GAKK
Sbjct: 63 LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122
Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263
V+I+AP+K D P +VVGVNE +Y ++ +IVSNASCTTNCLAP KV+++ GIV+G M
Sbjct: 123 VVISAPSK--DAPMFVVGVNEHEYKSDL-DIVSNASCTTNCLAPLAKVINDRFGIVEGLM 179
Query: 264 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322
TT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV V+P L GKL G++ RV
Sbjct: 180 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRV 239
Query: 323 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSST 382
PT +VSVVDL V +EK T +++ A ++ +EG LKGIL + +VS DF + SS
Sbjct: 240 PTVDVSVVDLTVRLEKAA-TYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSI 298
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 415
D+ + + D VK+V+WYDNEWGYS RVVDL
Sbjct: 299 FDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 286 bits (734), Expect = 1e-93
Identities = 163/355 (45%), Positives = 223/355 (62%), Gaps = 19/355 (5%)
Query: 85 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
A +KV INGFGRIGR + C G + +DVV V D S + ++ +KYD++ G K
Sbjct: 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61
Query: 142 ADVK-------IVDNETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
V+ + ++ + V+G IK V + R+P LPW +LG+D VIE TG+F D A
Sbjct: 62 YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
H++ GAKKV+I+APA G T V+GVN+ +Y ++VSNASCTTNCLAP V V+
Sbjct: 122 EGHLKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLT 180
Query: 254 EE-LGIVKGAMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQL 311
+E GI G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAKAV +V+P
Sbjct: 181 KEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240
Query: 312 KGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVS 371
KGKL G++ RVPTP+VSVVDL + + ++++AA ++A++ +KGIL D LVS
Sbjct: 241 KGKLTGMSFRVPTPDVSVVDLTF-RATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVS 299
Query: 372 VDFRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
DF + SS DS T+ K+V+WYDNEWGYS RVVDL +A K
Sbjct: 300 ADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAK 354
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 279 bits (716), Expect = 2e-89
Identities = 141/354 (39%), Positives = 200/354 (56%), Gaps = 36/354 (10%)
Query: 89 VAINGFGRIGR-------------NFLRCWHGRKDSPLDVVVVNDSGG---VKNASHLLK 132
V + GFGRIGR N LR L +VV K AS LL+
Sbjct: 130 VVLYGFGRIGRLLARLLIEKTGGGNGLR---------LRAIVVRKGSEGDLEKRAS-LLR 179
Query: 133 YDSLLGTFKADVKI-VDNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVD 189
DS+ G F + + +N I +G I+V+ P ++ + GI+ +V++ TG + D
Sbjct: 180 RDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRD 239
Query: 190 GPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPF 248
G +H+++ G KV++TAP KG DI V GVN D E IVS ASCTTN + P
Sbjct: 240 EEGLSQHLKSKGVAKVLLTAPGKG-DIKNIVHGVNHSDITDED-KIVSAASCTTNAITPV 297
Query: 249 VKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVM 308
+K ++++ GIV G + T HSYT DQ L+D H+ RR R+A LN+V T TGAAKAV+ +
Sbjct: 298 LKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKAL 357
Query: 309 PQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA-EGPLKGILAVCDV 367
P+L GKL G A+RVPTPNVS+ L +N+EK+ + E++N R+ + PL+ + D
Sbjct: 358 PELAGKLTGNAIRVPTPNVSMAILNLNLEKE-TSREELNEYLRQMSLHSPLQNQIDYTDS 416
Query: 368 P-LVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
+VS DF S + +DS T+V G+ V V WYDNE+GYS +VV + +A
Sbjct: 417 TEVVSSDFVGSRHAGVVDSQATIVNGNRAVLYV-WYDNEFGYSCQVVRVMEQMA 469
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 254 bits (651), Expect = 5e-84
Identities = 99/158 (62%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 304
LAP KV+++ GI KG MTT H+YT DQ+L+D SH+DLRR RAAA NI+PTSTGAAKAV
Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVDPSHKDLRRGRAAAPNIIPTSTGAAKAV 60
Query: 305 SLVMPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAV 364
LV+P+LKGKL G+A RVPTPNVSVVDL V +EK +T E+VNAA ++AAEG LKGIL
Sbjct: 61 GLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKP-VTVEEVNAALKEAAEGALKGILGY 119
Query: 365 CDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWY 402
+ PLVS DF SS D+ T+V+ + VKVVAWY
Sbjct: 120 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 209 bits (535), Expect = 1e-66
Identities = 84/153 (54%), Positives = 107/153 (69%), Gaps = 5/153 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR LR + D L+VV +ND + ++LLKYDS+ G F +V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALAQDD--LEVVAINDLTDPETLAYLLKYDSVHGRFDGEVE- 57
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
VD + + V+GK IKV + RDP +LPW ELG+DIV+E TGVF A H++AGAKKVII
Sbjct: 58 VDEDGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNAS 239
+APAK D PT+V GVN +DYD E +IVSNAS
Sbjct: 118 SAPAKD-DDPTFVYGVNHEDYDPE-DDIVSNAS 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 200 bits (510), Expect = 6e-63
Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 5/154 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR LR R D ++VV +ND + ++LLKYDS+ G F V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALERPD--VEVVAINDLTDPEYLAYLLKYDSVHGRFPGTVE- 57
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V+ + + V+GK IKV + RDP LPW ELG+DIV+E TG F A H++AGAKKVII
Sbjct: 58 VEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240
+AP+K AD PT+V GVN +YD E +I+SNASC
Sbjct: 118 SAPSKDAD-PTFVYGVNHDEYDGE-DHIISNASC 149
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 120 bits (302), Expect = 1e-30
Identities = 91/341 (26%), Positives = 165/341 (48%), Gaps = 22/341 (6%)
Query: 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDS-LLGTFKADVKI 146
V INGFG +G+ L + D + VV VND S + +++L+ +S L A +++
Sbjct: 5 VGINGFGPVGKAVL--FASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + + + I+V + D +++ W + G+ V+E TG++ H+ GAK V +
Sbjct: 63 VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+ AD PT + G N++ + + LAP ++ + E G+ + + T
Sbjct: 123 AG--QSADAPTVMAGSNDERLS-ASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAI 179
Query: 267 HSYTGDQRLLDA---SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323
H Q + A + +D R+ R A I P A+ V ++P L G+++G A +VP
Sbjct: 180 HG-MQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP 238
Query: 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDF-----RCSD 378
+D++V K+ ++ E V++A +AA L G+L + ++SVD C D
Sbjct: 239 VKKGCAIDMLVRT-KQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGKLCYD 297
Query: 379 VSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 419
+S+ SS ++ K+V W+D E Y+ R++ L +
Sbjct: 298 ATSS--SSSR---EGEVHKMVLWFDVECYYAARLLSLVKQL 333
>gnl|CDD|202342 pfam02672, CP12, CP12 domain. The function of this domain is
unknown, it does contain three conserved cysteines and a
histidine, that suggests this may be a zinc binding
domain (Bateman A pers. observation). This domain is
found associated with CBS domains in some proteins
pfam00571.
Length = 71
Score = 36.1 bits (84), Expect = 0.003
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 433 DPLEDFCQTNPADEECKVYE 452
PLE +C NP +EC+VY+
Sbjct: 51 TPLELYCDENPEADECRVYD 70
>gnl|CDD|198161 smart01093, CP12, CP12 domain.
Length = 72
Score = 34.7 bits (80), Expect = 0.008
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 433 DPLEDFCQTNPADEECKVYE 452
LE +C NP +EC+VY+
Sbjct: 52 TSLELYCDENPDADECRVYD 71
>gnl|CDD|215102 PLN00204, PLN00204, CP12 gene family protein; Provisional.
Length = 126
Score = 36.1 bits (83), Expect = 0.009
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 433 DPLEDFCQTNPADEECKVYE 452
DPLE++C+ NP +EC+ YE
Sbjct: 106 DPLEEYCKDNPETDECRTYE 125
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 37.5 bits (87), Expect = 0.011
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVII---TAPAKGADIPTYVVGVNEKD-YDHEV 231
GIDI + G V A K +AG ++I +A D+P V VN +D +
Sbjct: 61 GIDIALFSAGGSVSKEFAPKAAKAGV--IVIDNTSAFRMDPDVPLVVPEVNFEDLKEFNP 118
Query: 232 ANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271
I++N +C+T + +K + +E I + ++T + +G
Sbjct: 119 KGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSG 158
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 36.1 bits (84), Expect = 0.031
Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 36/173 (20%)
Query: 214 DIPTYVVGVNEKDYDHEVAN--IVSNASCTTNCLAPFVKVMDEELGIVK----------- 260
D+P V VN + I++N +C+T L +K + + GI +
Sbjct: 105 DVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSG 164
Query: 261 -GAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSL------------V 307
GA LL+ A N++P G +
Sbjct: 165 AGAEGGVELAGQTDALLNGIPILPIGYP-LAFNVIPHIDGFLDNGYTKEEWKIEAETRKI 223
Query: 308 MPQLKGKLNGIALRVPTPNVSVVD---LVVNVE-KKGITAEDVNAAFRKAAEG 356
+ K++ +RVP V V VE KK + E++ +A G
Sbjct: 224 LGDPDIKVSATCVRVP-----VFYGHSEAVTVEFKKDVDPEEIREELLPSAPG 271
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
metabolism].
Length = 333
Score = 31.8 bits (73), Expect = 0.71
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 27/130 (20%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDS-----PLDVVVVNDSGGVKNASHLLKYDSLLGTF 140
+KV + G G +G L +++ +++ VV V + L
Sbjct: 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVV----AVADRDGSLVR------- 51
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA- 199
D+ +++ E + DG L + ID+V+E G V+
Sbjct: 52 --DLDLLNAEVWTTDGALSLGDEVLL-------DEDIDVVVELVGGDVEPAEPADLYLKA 102
Query: 200 -GAKKVIITA 208
K ++TA
Sbjct: 103 LENGKHVVTA 112
>gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino
acid transport and metabolism].
Length = 349
Score = 31.5 bits (72), Expect = 0.99
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 257 GIVKGAMTTTHSYTGDQ--RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGK 314
GIV GA YTG + RLL A H D+ L ++ + A K VS V P L+G
Sbjct: 6 GIV-GA----SGYTGLELLRLL-AGHPDVE------LILISSRERAGKPVSDVHPNLRGL 53
Query: 315 LNGIALRVP----------------TPNVSVVDLVVNVEKKGITAEDVNAAFR 351
++ + + P+ +LV + + G D++A FR
Sbjct: 54 VD-LPFQTIDPEKIELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFR 105
>gnl|CDD|221027 pfam11205, DUF2987, Protein of unknown function (DUF2987). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 148
Score = 29.9 bits (68), Expect = 1.6
Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 35/139 (25%)
Query: 222 VNEKDYDH-EVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH-----SYTGDQRL 275
VN++DY EVA + +A C I K + T + T DQRL
Sbjct: 20 VNKEDYPLVEVAFYLPDAQTGQAC------------QIEKAWIETEKHYEPLTITDDQRL 67
Query: 276 LDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDLVVN 335
L + L+ A+A + TG A L M Q+ K S +L
Sbjct: 68 LLPFDKQLKSAKAL---VNVDLTGDAAQCDLSM-QVMAKEP------LKAEYSKAELAA- 116
Query: 336 VEKKGITAEDVNAAFRKAA 354
E ++A A
Sbjct: 117 ------LVEQMDALLDDLA 129
>gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional.
Length = 320
Score = 30.4 bits (69), Expect = 1.9
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 415 LAHLVATKWPGV-----AAGGSGDPLEDFCQTNPAD 445
L W G+ A GS L FCQ +P D
Sbjct: 232 LQQCYQQGWRGIFVIKPAIAGSPSRLRQFCQQHPLD 267
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 30.3 bits (69), Expect = 2.4
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 36 DVAE--FAGL--RANAGATYATGARDASFF-----DAVTAQLTPKVAAGSVPVKKETVAK 86
+VAE +GL RA G + A ASFF AV +L K+AA + P +K +
Sbjct: 174 EVAEAYISGLEARAAKGGDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEA 233
Query: 87 L--KVAI 91
L KVAI
Sbjct: 234 LKGKVAI 240
>gnl|CDD|218214 pfam04695, Pex14_N, Peroxisomal membrane anchor protein (Pex14p)
conserved region. Family of peroxisomal membrane anchor
proteins which bind the PTS1 (peroxisomal targeting
signal) receptor and are required for the import of
PTS1-containing proteins into peroxisomes. Loss of
functional Pex14p results in defects in both the PTS1
and PTS2-dependent import pathways. Deletion analysis of
this conserved region implicates it in selective
peroxisome degradation. In the majority of members this
region is situated at the N-terminus of the protein.
Length = 79
Score = 28.0 bits (63), Expect = 2.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 337 EKKGITAEDVNAAFRKAAEGP 357
E KG+T E+++ A ++A
Sbjct: 31 ESKGLTEEEIDEALKRAGNPQ 51
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 29.3 bits (66), Expect = 4.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 273 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVS--LVMPQLKGKLNGIALRVP 323
R L S + RR + L S GA V LV+ G LNGI+L++P
Sbjct: 415 LRRLTGSTLEQRRVVRSQLAARRGSIGALSTVCGGLVLALFIGILNGISLQLP 467
>gnl|CDD|236903 PRK11380, PRK11380, hypothetical protein; Provisional.
Length = 353
Score = 29.1 bits (65), Expect = 4.7
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 117 VVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV-----------VSNR 165
+ + G HLL D TFKA+++ + I++ KL S +
Sbjct: 178 IEDSEGYCALMEHLLSGDHGANTFKANMEEAPEQMIALLAKLAVFPSDYISDCANHSSGK 237
Query: 166 DPLQLPWA-ELGIDIVIEGT 184
P +L WA +L I + T
Sbjct: 238 SPAKLIWAADLSWMISLSRT 257
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 29.0 bits (66), Expect = 5.2
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 213 ADIPTYVVGVNEKDYD-HEVANIVSNASCTTNCLAPFVKVMDEELGIVK 260
D+P V VN + H I++N +C+T + +K + + GI +
Sbjct: 101 PDVPLVVPEVNPEALAEHRKKGIIANPNCSTIQMVVALKPLHDAAGIKR 149
>gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase;
Provisional.
Length = 347
Score = 29.0 bits (65), Expect = 5.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 381 STIDSSLTMVMGD-----DMVKVVAWYDNEWGYSQRVVDLAHLV 419
S I S T VM D D K A YD ++RV ++AH V
Sbjct: 93 SAIRSGFTSVMMDGSLLADG-KTPASYDYNVDVTRRVTEMAHAV 135
>gnl|CDD|220005 pfam08757, CotH, CotH protein. Members of this family include the
spore coat protein H (cotH).
Length = 298
Score = 28.8 bits (65), Expect = 5.9
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 319 ALRVPTPNVSVVDLVVNVEKKGI--TAEDVNAAFRKAAEGPLKGILAVCDVPLVSVD 373
L VP P V+L +N E +G+ E V+ +F KA G L D
Sbjct: 58 DLGVPAPRARYVELYINGEYQGLYLLVEQVDKSFLKAHGLDDDGNLYKADSKDEEGT 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,950,497
Number of extensions: 2273412
Number of successful extensions: 2294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 54
Length of query: 453
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 353
Effective length of database: 6,502,202
Effective search space: 2295277306
Effective search space used: 2295277306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)