RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012940
(453 letters)
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 638 bits (1649), Expect = 0.0
Identities = 223/340 (65%), Positives = 272/340 (80%), Gaps = 2/340 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+
Sbjct: 62 -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTT
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
THSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAV+LV+P+LKGKLNGIALRVPTP
Sbjct: 181 THSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTP 240
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDLVV VEK E VN +KA++ +KGI+ D+PLVS DFR +D SS +DS
Sbjct: 241 NVSVVDLVVQVEKP-TITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 425
SLT+VM D+VKV+AWYDNEWGYSQRVVDLA L A KW
Sbjct: 300 SLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKWAA 339
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 638 bits (1647), Expect = 0.0
Identities = 221/343 (64%), Positives = 271/343 (79%), Gaps = 2/343 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+
Sbjct: 62 -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP K + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTT
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
THSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAV+LV+P+LKGKLNGIALRVPTP
Sbjct: 181 THSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTP 240
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDLVV VEK E VN +KA++ +KGI+ D+PLVS DFR +D SS +DS
Sbjct: 241 NVSVVDLVVQVEKP-TITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDS 299
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAA 428
SLT+VM D+VKV+AWYDNEWGYSQRVVDLA L A K +
Sbjct: 300 SLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSGRLGL 342
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 634 bits (1637), Expect = 0.0
Identities = 273/340 (80%), Positives = 303/340 (89%), Gaps = 3/340 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG PTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKGDI-PTYVVGVNEEGYTHA-DTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
THSYTGDQRLLDASHRDLRRARAA LNIVPTSTGAAKAV+LV+P LKGKLNGIALRVPTP
Sbjct: 179 THSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDLVV V KK AE+VNAAFR++A+ LKGIL+VCD PLVS+DFRC+DVSSTIDS
Sbjct: 239 NVSVVDLVVQVSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 425
SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQA 337
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 619 bits (1599), Expect = 0.0
Identities = 181/343 (52%), Positives = 239/343 (69%), Gaps = 5/343 (1%)
Query: 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKA 142
+ A +VAINGFGRIGR R ++V +N S + +HL+KYD++ G F
Sbjct: 1 SNAMTRVAINGFGRIGRMVFRQAIKESA--FEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
V+ + + VDGK+I++++NRDP +LPW +LG+++VIE TG F A H++AGAK
Sbjct: 59 TVE-AFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
KVI+TAP K D+ T VVGVNE D ++SNASCTTNCLAP VKV+DE+ GI G
Sbjct: 118 KVILTAPGKNEDV-TIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGL 176
Query: 263 MTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322
MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA++ V+P L GKL+G+ALRV
Sbjct: 177 MTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRV 236
Query: 323 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSST 382
PTPNVS+VDLVV+V++ +T E +N AF+ A G LKGI+ + PLVS+DF + S+
Sbjct: 237 PTPNVSLVDLVVDVKRD-VTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAI 295
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 425
ID TMVMGD VKV+AWYDNEWGYS+RVVDL LV +
Sbjct: 296 IDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDELAK 338
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 617 bits (1593), Expect = 0.0
Identities = 176/335 (52%), Positives = 230/335 (68%), Gaps = 4/335 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRN LR + + VV +ND G V+ +HLL+YDS+ G F +V+
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V +TI V IKV + R+P +LPW E +DI +E TG+F A H++AGAK+VI
Sbjct: 62 -VAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
++APA GAD+ T V GVN + ++SNASCTTNCLAP +V+++ +GI KG MTT
Sbjct: 121 VSAPADGADL-TVVYGVNNDKLTKD-HLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTT 178
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
HSYTGDQ LD H+DL RARAAAL+++PTSTGAAKAV LV+P+LKGKL+G+A+RVPTP
Sbjct: 179 IHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDL +++ T E+VN A R+AA G LKGIL D LVS DF SS +
Sbjct: 239 NVSVVDLTFIAKRE-TTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHT 297
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
T VM MV++++WYDNEWG+S R+ D A +
Sbjct: 298 DQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALG 332
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 613 bits (1583), Expect = 0.0
Identities = 184/333 (55%), Positives = 236/333 (70%), Gaps = 4/333 (1%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
+VAINGFGRIGR R + RK+ ++VV +ND K +HLLKYDS+ F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
++ VDGK IKV + DP +LPW +LG+D VIE TGVF + A H+QAGAKKVIIT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
APAKG DI T V+G NE E I+S ASCTTN +AP VKV+ E+ GIV G +TT H
Sbjct: 121 APAKGEDI-TVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 268 SYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNV 327
SYT DQR+LD H+DLRRARAAA+NI+PT+TGAAKAV+LV+P++KGKL+G+A+RVPTP+
Sbjct: 179 SYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDG 238
Query: 328 SVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSL 387
S+ DL V VEK+ T E+VNA ++A EG LKGI+ D P+VS D + S D+++
Sbjct: 239 SITDLTVLVEKE-TTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATI 297
Query: 388 TMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
T V+G +VKV +WYDNE+GYS RVVD L+
Sbjct: 298 TNVIGGKLVKVASWYDNEYGYSNRVVDTLELLL 330
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 610 bits (1576), Expect = 0.0
Identities = 202/336 (60%), Positives = 249/336 (74%), Gaps = 5/336 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R D ++VV VND +HLLKYDS+ G A+V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V+ + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK D T V+GVN+ YD + +++SNASCTTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNED-ITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326
HSYT DQR+LD H+DLRRARAAA +I+PT+TGAAKAV+LV+P+LKGKLNG+A+RVPTPN
Sbjct: 178 HSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
VSVVDLV +EK+ +T E+VNAA + AAEG LKGILA + PLVS D+ S VSSTID+
Sbjct: 238 VSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDAL 296
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
TMV+ MVKVV+WYDNE GYS RVVDLA +A+K
Sbjct: 297 STMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 609 bits (1573), Expect = 0.0
Identities = 183/337 (54%), Positives = 236/337 (70%), Gaps = 7/337 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS+ F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D++ + VDGK I+ + +DP ++PWAE G+ +VIE TGVF D A H++ GAKKVII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAKG DI T V+GVN + YD +I+SNASCTTN LAP +KV++E G+ K MTT
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTV 175
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPN 326
HSYT DQRLLD H+DLRRARAAA+NI+PT+TGAAKA +LV+P LKG+ +G+ALRVPT
Sbjct: 176 HSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 327 VSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSS 386
S+ D+ ++++ +TAE+VNAA + AAEGPLKGILA + +V D SS +D+
Sbjct: 236 GSISDITALLKRE-VTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAK 294
Query: 387 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 423
LT +G +MVKV AWYDNEWGY+ RV DL LV K
Sbjct: 295 LTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKG 330
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 603 bits (1558), Expect = 0.0
Identities = 139/338 (41%), Positives = 202/338 (59%), Gaps = 4/338 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN +R + + + + VV +N+ +HLLKYD+ G F +V
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ + P T V GVN+ E IVSNASCTTNC+ P +K++D+ GI G +T
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAE-HRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 265 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
T HS DQ+++DA H DLRR RAA+ +I+P T A ++ PQ + IA+RVPT
Sbjct: 180 TIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPT 239
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
NV+ +DL V V+K + A +VN +KAA+G GI+ ++PLVSVDF S+ +D
Sbjct: 240 INVTAIDLSVTVKKP-VKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVD 298
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
+ T V G ++K + W DNEWG++ R++D +AT
Sbjct: 299 GTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATV 336
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 603 bits (1557), Expect = 0.0
Identities = 185/344 (53%), Positives = 242/344 (70%), Gaps = 12/344 (3%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
+KV INGFGRIGR+F R GR++ +++V +ND K+ +HLLKYDS+ G FK V+
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D A KH+Q GAKKVI
Sbjct: 60 -AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAPAK D T V+GVNE+ Y+ + NI+SNASCTTNCLAP VKV++E G+ KG M T
Sbjct: 119 ITAPAKNPD-ITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVT 177
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
H+YT DQRLLD H+D RRARAAA+NIVPT+TGAAKA+ V+P+LKGKL+G A RVP P
Sbjct: 178 VHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP 237
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEG-------PLKGILAVCDVPLVSVDFRCSD 378
+ S++DL V V K + E+VN FR+AA+ LK IL C+ P+VS D +
Sbjct: 238 DGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNP 297
Query: 379 VSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
S+ D+ LT V+ ++V + AWYDNEWGYS R+ DL +A +
Sbjct: 298 HSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAER 340
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 598 bits (1544), Expect = 0.0
Identities = 165/337 (48%), Positives = 220/337 (65%), Gaps = 5/337 (1%)
Query: 87 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAING+GRIGRN LR + G K +++V +ND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V+ + V+G I+V +NR+P QLPW L +D+V+E TG F AG HI+ GAKKVI
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
I+AP T V GVN ++SNASCTTNCLAP VK ++++LG+ G MTT
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKST-DTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTT 179
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
H+YT +Q L D H DLRRAR+A ++++PT TGAA AV V+P+L GKLNG A+RVPT
Sbjct: 180 VHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTI 239
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVS+VDL ++ T E+VN + A+EG LKGIL PLVSVD+ SST+D+
Sbjct: 240 NVSIVDLSFVAKRN-TTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDA 298
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
SLT V G +VKV +WYDNEWG+S R++D + +
Sbjct: 299 SLTKVSG-RLVKVSSWYDNEWGFSNRMLDTTVALMSA 334
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 594 bits (1534), Expect = 0.0
Identities = 182/354 (51%), Positives = 238/354 (67%), Gaps = 12/354 (3%)
Query: 73 AAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132
G++ + + +K+AINGFGRIGRN + R +D+V +ND K +HLLK
Sbjct: 8 HMGTLEAQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLK 64
Query: 133 YDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP- 191
YDS G + V+ + I VDG+ IK+++ RDP LPWA+LGID+VIE TGVF
Sbjct: 65 YDSTFGVYNKKVE-SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATS 123
Query: 192 ---GAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAP 247
G H+ AGAKKVI+T PAK T V+GVN+ D + + VSNASCTTNCLAP
Sbjct: 124 DKGGYLDHVNHAGAKKVILTVPAKDEI-KTIVLGVNDHDINSD-LKAVSNASCTTNCLAP 181
Query: 248 FVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLV 307
KV+ E GI +G MTT H+YT DQR+LD H DLRRARAAAL+I+PTSTGAAKAV LV
Sbjct: 182 LAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLV 241
Query: 308 MPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGP-LKGILAVCD 366
+P+LKGKLNG ++RVP P S+VDL V ++KK +T E++N+ RKA+E P LKGIL +
Sbjct: 242 LPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTE 301
Query: 367 VPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
P+VS D + + SS +D TMV+ + K+++WYDNE+GYS RVVDLA +
Sbjct: 302 DPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 521 bits (1345), Expect = 0.0
Identities = 152/340 (44%), Positives = 203/340 (59%), Gaps = 14/340 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R + L+VV VND +HLLKYD++ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEG--LEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 62 VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 122 SAPATGDL-KTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 179
Query: 267 HSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
H+YTGDQ DA HR D RRARAAA NI+P STGAAKA+ V+P++ GKL+G A RVP
Sbjct: 180 HAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPV 239
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
S+ +L V +EK+ +T E VN A + A+ + +VS D S D
Sbjct: 240 ATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFG----YTEDEIVSSDVVGMTYGSLFD 295
Query: 385 SSLTMVMG---DDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
++ T VM +VKV AWYDNE Y+ ++V +A
Sbjct: 296 ATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 497 bits (1283), Expect = e-177
Identities = 158/347 (45%), Positives = 218/347 (62%), Gaps = 9/347 (2%)
Query: 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
++ + + INGFGRIGR LR R D + VV +ND V+ ++LLKYDS+ G
Sbjct: 11 RENLYFQGTLGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHG 68
Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
F V+ V + + ++GK++KV +DP ++PW G IV E TGVF A H++
Sbjct: 69 NFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLK 127
Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258
GAKKVII+AP K P YV+GVN +YD N++SNASCTTNCLAP K+++++ GI
Sbjct: 128 GGAKKVIISAPPKDNV-PMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGI 186
Query: 259 VKGAMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKL 315
V+G MTT HS T +Q +D + D R R A NI+P STGAAKAV V+P L GKL
Sbjct: 187 VEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKL 246
Query: 316 NGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFR 375
G+A+RVPTP+VSVVDL + K + E++ A ++A+ GP+KGI+ +VS DF
Sbjct: 247 TGMAIRVPTPDVSVVDLTCKLAK-PASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFI 305
Query: 376 CSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
SS D + + + D VK+++WYDNE GYS R+VDLA VA++
Sbjct: 306 GCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 352
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 493 bits (1271), Expect = e-175
Identities = 160/335 (47%), Positives = 218/335 (65%), Gaps = 8/335 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + + V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 119 TGPSKDNT-PMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 175
Query: 267 HSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV V+P+L GKL G+A RVPTP
Sbjct: 176 HATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 235
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDS 385
NVSVVDL V +EK T E + AA + AAEG +KG+L + +VS DF +S D+
Sbjct: 236 NVSVVDLTVRLEK-AATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDA 294
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
+ + D+ VK+V+WYDNE GYS +V+DL ++
Sbjct: 295 KAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 488 bits (1258), Expect = e-173
Identities = 157/339 (46%), Positives = 211/339 (62%), Gaps = 9/339 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADV 144
+L V INGFGRIGR LR + + VV VND + ++ KYDS G +K V
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ N + VD I V ++P Q+PW +G V+E TGV++ A HI AGA++V
Sbjct: 64 E-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+I+AP+ D P +V+GVNE DY+ NIVSNASCTTNCLAP KV+ E GIV+G MT
Sbjct: 123 VISAPSP--DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMT 180
Query: 265 TTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVP 323
T HSYT Q+ +D S + R R A NI+P STGAAKAV+ V+P+LKGKL G+A RVP
Sbjct: 181 TVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVP 240
Query: 324 TPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTI 383
TP+VSVVDL + + + A + AA+GP+ GILA + +VS DF SS
Sbjct: 241 TPDVSVVDLTCRLAQ-PAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIF 299
Query: 384 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D+ + + D+ VK+++WYDNE+GYS RVVDL + ++
Sbjct: 300 DAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR 338
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 487 bits (1255), Expect = e-172
Identities = 155/353 (43%), Positives = 219/353 (62%), Gaps = 19/353 (5%)
Query: 87 LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
+KV INGFGRIGR + C G + +DVV V D + + ++ ++YD++ G FK +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 VKIV-------DNETISVDGKLIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
V ++T+ V+G I V R+P LPW +LG++ VIE TG+F A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVM-DE 254
H++ GA+KV+I+APA T V+GVN +Y+ ++VSNASCTTNCLAP V V+ E
Sbjct: 123 HLRGGARKVVISAPAS-GGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 255 ELGIVKGAMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKG 313
G+ G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAKAV +V+P +G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 314 KLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVD 373
KL G++ RVPTP+VSVVDL + + ++++AA ++A++ +KGIL D LVS D
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAA-RDTSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 374 FRCSDVSSTIDSSLTMVMG----DDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
F + SS DS T+ K+V+WYDNEWGYS RVVDL +A+K
Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 480 bits (1239), Expect = e-170
Identities = 164/336 (48%), Positives = 216/336 (64%), Gaps = 9/336 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGR +R R + ++VV +ND A+++ KYDS G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D++ I VDGK I RDP LPW +DI I+ TGVF + A KHI AGAKKV+
Sbjct: 60 -HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP+ P +V+GVNE+ Y + IVSNASCTTNCLAP KV+++ GI +G MTT
Sbjct: 119 ITAPSS--TAPMFVMGVNEEKYTSD-LKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTT 175
Query: 266 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
HS T Q+ +D SH+D R R A+ NI+P+STGAAKAV V+P+L+GKL G+A RVPT
Sbjct: 176 VHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 235
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTID 384
+VSVVDL V + K T +++ + AAEG LKG+L + +VS DF SS D
Sbjct: 236 VDVSVVDLTVKLNK-ETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFD 294
Query: 385 SSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420
+S + + VK+V+WYDNE+GYS RVVDL VA
Sbjct: 295 ASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 481 bits (1240), Expect = e-170
Identities = 160/346 (46%), Positives = 215/346 (62%), Gaps = 10/346 (2%)
Query: 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
+A K+ INGFGRIGR R GRKD ++VV +ND + + +LLKYDS+ G
Sbjct: 5 HHHHMAATKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHG 62
Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
F +V + + + K + V + +DP Q+PW + +D+V E TGVF+ A H++
Sbjct: 63 QFPCEVT-HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLK 121
Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258
GAKKVI++AP K P YV+G+N YD + IVSNASCTTNCLAP KV+++ GI
Sbjct: 122 GGAKKVIMSAPPKDDT-PIYVMGINHHQYDTK-QLIVSNASCTTNCLAPLAKVINDRFGI 179
Query: 259 VKGAMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKL 315
V+G MTT H+ T +Q ++D + D R R A NI+P STGAAKAV V+P+L GKL
Sbjct: 180 VEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKL 239
Query: 316 NGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFR 375
G+A RVP VSVVDLV ++K E+V +KAAEGPLKGIL + +VS DF
Sbjct: 240 TGVAFRVPIGTVSVVDLVCRLQK-PAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFV 298
Query: 376 CSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAT 421
+ SS D + + D+ K+V+WYDNEWGYS RV+DLA + T
Sbjct: 299 HDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 478 bits (1233), Expect = e-169
Identities = 160/341 (46%), Positives = 223/341 (65%), Gaps = 9/341 (2%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-A 142
K+K+ INGFGRIGR R +D +++V VND +++ KYD++ G +K +
Sbjct: 2 GKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHS 59
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
D+KI D++T+ + K + V R+P ++PWAE G + V+E TGVF D A H++ GAK
Sbjct: 60 DIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAK 119
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
KV+I+AP+K D P +V GVNE Y + +IVSNASCTTNCLAP KV+ + GI++G
Sbjct: 120 KVVISAPSK--DAPMFVCGVNEDKYTSD-IDIVSNASCTTNCLAPLAKVIHDNFGIIEGL 176
Query: 263 MTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALR 321
MTT H+ T Q+ +D S +D R RAA+ NI+P+STGAAKAV V+P L GKL G++ R
Sbjct: 177 MTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFR 236
Query: 322 VPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSS 381
VPT +VSVVDL V +EK + + + +A + A+EG LKGI+ + LVS DF SS
Sbjct: 237 VPTVDVSVVDLTVRIEK-AASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSS 295
Query: 382 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D+ + + D+ VK+VAWYDNEWGYS RV+DL +A
Sbjct: 296 IFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 470 bits (1211), Expect = e-166
Identities = 155/340 (45%), Positives = 212/340 (62%), Gaps = 9/340 (2%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKAD 143
K+KV +NGFGRIGR R +D+V +ND + ++ +YDS G F
Sbjct: 2 GKVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
VK +N + ++G I + RDP ++ W + G + V+E TGVF AG H+Q GAK+
Sbjct: 60 VK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263
VII+AP+ D P +V+GVN + YD+ + I+SNASCTTNCLAP KV+ + GIV+G M
Sbjct: 119 VIISAPSA--DAPMFVMGVNHEKYDNSL-KIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175
Query: 264 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRV 322
TT H+ T Q+ +D S + R R A NI+P STGAAKAV V+P+L GKL G+A RV
Sbjct: 176 TTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 235
Query: 323 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSST 382
PT NVSVVDL +EK +D+ ++A+EGPLKGIL + +VS DF SST
Sbjct: 236 PTANVSVVDLTCRLEK-PAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSST 294
Query: 383 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 422
D+ + + D VK+++WYDNE+GYS RVVDL +A+K
Sbjct: 295 FDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 334
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 280 bits (717), Expect = 1e-91
Identities = 56/337 (16%), Positives = 113/337 (33%), Gaps = 35/337 (10%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKI 146
VAING+G +G+ + D + V+ V+ + L K L VK+
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+ I V G + ++ D IVI+ T + + + G K +
Sbjct: 61 FEKAGIEVAGTVDDMLDEAD------------IVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
++ N ++ + + SC T L +K + + GI K
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK--DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIV 166
Query: 267 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSL-VMPQLKGKLNGIALRVPTP 325
++ ++ I+P V L ++ +A+ VPT
Sbjct: 167 RRGADPAQV----------SKGPINAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTT 216
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPL----KGILAVCDVPLVSVD-FRC-SDV 379
+ +++V VE+ T +D+ F L G+ + ++ + + R +D+
Sbjct: 217 LMHQHNVMVEVEET-PTVDDIIDVFEDTPRVILISAEDGLTSTAEIMEYAKELGRSRNDL 275
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 416
++ + D+ + + E VD
Sbjct: 276 FEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAV 312
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 268 bits (688), Expect = 4e-87
Identities = 56/328 (17%), Positives = 108/328 (32%), Gaps = 29/328 (8%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KV ING+G IG+ + D ++V+ V + ++ +K V
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDD--MEVIGVTKT-----KPDFEARLAVEKGYKLFVA 54
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
I DNE + + + L + DIV++G + + K I
Sbjct: 55 IPDNERV-KLFEDAGIPVEGTILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 206 ITAPAKGADI-PTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ K D+ + + + + V SC T L + ++ I K +
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK--DYVRVVSCNTTGLCRILYAINSIADIKKARIV 168
Query: 265 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPT 324
A N V + V V+P+ +GK+ A+ VPT
Sbjct: 169 LVRRAADPNDDKT------GPVNAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPT 222
Query: 325 PNVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPL----KGILAVCDVPLVSVDF---RCS 377
+ + L+V V+ ++ +D+ A +K G + + D R
Sbjct: 223 TLMHMHTLMVEVDGD-VSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYD 281
Query: 378 DVSSTIDSSLTMVMGDDMVKVVAWYDNE 405
+ V+ ++ + ++ E
Sbjct: 282 INELVVWEESINVLENE-IFLMQAVHQE 308
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 245 bits (628), Expect = 2e-78
Identities = 51/326 (15%), Positives = 107/326 (32%), Gaps = 34/326 (10%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
K+KV +NG+G IG+ + D ++++ + + ++ K + ++
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTK-PDFEAYRAKELGIPVYAASEEF 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
I E + L +DI+++ T + + +AG K +
Sbjct: 59 IPRFEKEGFE----------VAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
++V N + + N V SC T L + + E V M
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK--NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIR 166
Query: 266 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTP 325
+ D + R A V + V + + +A VPT
Sbjct: 167 RAADPNDTK---------RGPINAIKPTVEVPSHHGPD---VQTVIPINIETMAFVVPTT 214
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPL----KGILAVCDVPLVSVD--FRCSDV 379
+ V ++V ++K +T +DV F L KG + + + D +++
Sbjct: 215 LMHVHSVMVELKKP-LTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNL 273
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNE 405
++ + + + + E
Sbjct: 274 YEIAVWKESINIKGNRLFYIQAVHQE 299
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 208 bits (531), Expect = 6e-64
Identities = 49/326 (15%), Positives = 110/326 (33%), Gaps = 35/326 (10%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
VA+NG+G IG+ + D + +V V + A + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+ I V G + DIV++ T V ++Q +
Sbjct: 61 EESGIPVAGTVE------------DLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
++ N + + + SC T L + +++ + K T
Sbjct: 109 GEKAEVADISFSALCNYNEALGK--KYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVR 166
Query: 268 SYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--AKAVSLVMPQLKGKLNGIALRVPTP 325
+ ++++ +L P + + AK V+ V+ + +A+ PT
Sbjct: 167 RAADQK--------EVKKGPINSLVPDPATVPSHHAKDVNSVIRN--LDIATMAVIAPTT 216
Query: 326 NVSVVDLVVNVEKKGITAEDVNAAFRKAAEGPL----KGILAVCDVPLVSVDFRCS--DV 379
+ + + + + K + +D+ + L A ++ V+ D + D+
Sbjct: 217 LMHMHFINITL-KDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDI 275
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNE 405
+ S ++ + DD V ++ E
Sbjct: 276 PEVMIFSDSIYVKDDEVMLMYAVHQE 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 9e-09
Identities = 43/358 (12%), Positives = 97/358 (27%), Gaps = 91/358 (25%)
Query: 131 LKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGID-IVIEGTGVFVD 189
+Y +L F+ + + + V ++S + ID I++
Sbjct: 16 YQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEE----------IDHIIMS------- 57
Query: 190 GPGAGKHIQAGAKKVIITAPAKGADI-PTYVVGVNEKDYD------HEVANIVS------ 236
K +G ++ T +K ++ +V V +Y S
Sbjct: 58 -----KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 237 ----NASCTTNCLAPFVK--V---------------MDEELGIV----KGAMTTTHSYTG 271
+ N F K V + ++ G+ G
Sbjct: 113 IEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------G 162
Query: 272 DQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVD 331
+ + I + + V+ L + ++ S D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSD 218
Query: 332 LVVNVEKKGITAEDVNAAFRK-AAEGPLKG---ILA-VCDVPLV-SVDFRCSDVSSTIDS 385
N++ + + A R+ P + +L V + + + C + +T
Sbjct: 219 HSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 386 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNP 443
+T + ++ + + ++ L+ K+ P E TNP
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLL-KYLDCRP--QDLPREV-LTTNP 327
Score = 52.2 bits (124), Expect = 2e-07
Identities = 53/369 (14%), Positives = 97/369 (26%), Gaps = 115/369 (31%)
Query: 133 YDSLLGTFKADVKIVDNET---ISVDGKLIKVVSNRDPLQLPWAELGIDI------VIEG 183
Y L+ K + + T I +L + + + + +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 184 TGVFVDG-PGAGKHIQAGA----KKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNA 238
V +DG G+GK A KV K I + + + + V ++
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK---I--FWLNLKNCNSPETVLEMLQK- 204
Query: 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLR----RARAAALNIV 294
+ +D + HS R+ R + L
Sbjct: 205 ---------LLYQIDPNW-----TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--- 247
Query: 295 PTSTGAAKAVSLVMPQLKGK--LNGIALR----VPTPNVSVVDLVVNVEKKGITAEDVNA 348
LV+ ++ N L + T V D + I+ + +
Sbjct: 248 -----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 349 AFRKAAEGPLKGILA-------------VCDV-PL-VSV------DFR----------CS 377
E K +L V P +S+ D C
Sbjct: 297 TLTPD-EV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 378 DVSSTIDSSLTMVMGDDM-------------VKV------VAWYDNEWGYSQRVVDLAH- 417
+++ I+SSL ++ + + + W+D VV+ H
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 418 --LVATKWP 424
LV K P
Sbjct: 414 YSLVE-KQP 421
Score = 35.6 bits (81), Expect = 0.035
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 45/146 (30%)
Query: 56 RDASFFDAVTAQ-------------LTPK-----------VAAGSVPVKKETVAKLKVAI 91
R D ++A LTP +P + T +++I
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 92 NGFGRIGRNFLRCWHGRKDSPLDVV--VVNDSGGVKNASHLLKYDSLLGTFKADVKIVDN 149
R+ L W K D + ++ S V + K L F I
Sbjct: 333 --IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387
Query: 150 ETISVDGKLIKVVSNRDPLQLPWAEL 175
+ L L W ++
Sbjct: 388 -PTIL-------------LSLIWFDV 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 85/503 (16%), Positives = 156/503 (31%), Gaps = 151/503 (30%)
Query: 5 SALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAG----------LRANAGATYATG 54
+A ++ P + S + +L VA F G LR + TY
Sbjct: 128 TARIMAKRPFDKKSNSALFRA--VGEGNAQL-VAIFGGQGNTDDYFEELR-DLYQTYHVL 183
Query: 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCW-HGRKDSP- 112
D L+ + + E V F + G N L W ++P
Sbjct: 184 VGD--LIKFSAETLSELIRT---TLDAEKV---------FTQ-GLNILE-WLENPSNTPD 227
Query: 113 ---LDVVVVNDSG---GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLI--KVVSN 164
L + + S GV +H + LLG +++ L+ ++
Sbjct: 228 KDYLLSIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 165 RDPLQLPWAELGIDIVIEGTGV--FVDGPGAGKHIQ------AGAKKVIITAPAKGADIP 216
D W V + V F+ G + ++ + +P
Sbjct: 286 TDS----WESF-FVSVRKAITVLFFI-----GVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 217 TY---VVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQ 273
+ + + ++ +V + V+ TN P K + E+ +V GA +G
Sbjct: 336 SPMLSISNLTQE----QVQDYVN----KTNSHLPAGKQV--EISLVNGA--KNLVVSGPP 383
Query: 274 RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIA--LRVPTP-----N 326
+ L + LR+A+A P+ ++ P + KL L V +P
Sbjct: 384 QSLYGLNLTLRKAKA------PSGLDQSRI-----PFSERKLKFSNRFLPVASPFHSHLL 432
Query: 327 VSVVDLVVNVEKKGITAEDV---NAAFRKAAEGPLKGILAVCDVPLVSV----DFRCSDV 379
V DL+ +D+ N +F ++ +P+ D R +
Sbjct: 433 VPASDLIN---------KDLVKNNVSFNAKD---IQ-------IPVYDTFDGSDLR--VL 471
Query: 380 SSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG---------- 429
S +I + + + V W + ++D PG A+G
Sbjct: 472 SGSISERIVDCI---IRLPVKWETTTQFKATHILDFG-------PGGASGLGVLTHRNKD 521
Query: 430 GSG------DPLEDFCQTNPADE 446
G+G L+ NP D+
Sbjct: 522 GTGVRVIVAGTLD----INPDDD 540
Score = 38.5 bits (89), Expect = 0.005
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 67/183 (36%)
Query: 13 PAIT--------------RIPSKTT---HSFPTQCSTKRLDVAEFAGLRANAGATYATGA 55
PA+T IP+ T HS + E+A L + A
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHS-----------LGEYAALASLADVM----- 1777
Query: 56 RDASFFDAVTAQLTP---KVAAGSVPVKKETVAKLK-VAINGFGRIGRNF----LR--CW 105
S V ++ +VP + + +AIN GR+ +F L+
Sbjct: 1778 ---SIESLV--EVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVE 1831
Query: 106 HGRKDSPLDVVVVND---------SG---GVKNASHLLKYDSLLGTFKADVKIVD-NETI 152
K + V +VN +G + +++L + + K + I++ +++
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF---IKLQK--IDIIELQKSL 1886
Query: 153 SVD 155
S++
Sbjct: 1887 SLE 1889
Score = 31.2 bits (70), Expect = 0.97
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 101/252 (40%)
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG 200
+AD D S ++ +V N +P+ L T F G GK I+
Sbjct: 1648 RADNHFKDTYGFS----ILDIVIN-NPVNL-------------TIHF-GGEK-GKRIREN 1687
Query: 201 AKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVK 260
Y + E D ++ K ++E
Sbjct: 1688 -----------------YSAMIFETIVDGKLK------------TEKIFKEINEH----- 1713
Query: 261 GAMTTTHSYTGDQRLLD--------------ASHRDLRRARAAALNIVPT-------STG 299
+T++++ ++ LL A+ DL+ ++P S G
Sbjct: 1714 ---STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-----GLIPADATFAGHSLG 1765
Query: 300 -----AAKA--------VSLVMPQLKGKLNGIALRVPTPNVSVVDLV-VNVEK--KGITA 343
A+ A V +V +G +A+ S ++ +N + +
Sbjct: 1766 EYAALASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 344 EDVNAAFRKAAE 355
E + + +
Sbjct: 1824 EALQYVVERVGK 1835
>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast,
oxidoreductase binding complex; HET: NAD; 2.00A
{Arabidopsis thaliana} PDB: 3rvd_I*
Length = 82
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 420 ATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 452
A+ DPLE++C+ NP EC+ Y+
Sbjct: 49 ASHARDKKKADGSDPLEEYCKDNPETNECRTYD 81
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 38.3 bits (89), Expect = 0.004
Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 36/151 (23%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
K++ AI G+G IGR L+ D ++ +
Sbjct: 9 KIRAAIVGYGNIGRYALQALREAPD--FEIAGIVRR------------------------ 42
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ + + + +VVS+ + L+ +D+ + + A + ++ G
Sbjct: 43 --NPAEVPFELQPFRVVSDIEQLE------SVDVALVCSPSREVERTALEILKKG-ICTA 93
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVS 236
+ I + + A +++
Sbjct: 94 DSFDIH-DGILALRRSLGDAAGKSGAAAVIA 123
>2lj9_A CP12 domain-containing protein 2; helix, protein binding,
intrinsically disordered protein; NMR {Arabidopsis
thaliana}
Length = 99
Score = 35.6 bits (81), Expect = 0.004
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 420 ATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 452
A+ DPLE++C+ NP EC+ Y+
Sbjct: 66 ASHARDKKKADGSDPLEEYCKDNPETNECRTYD 98
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 33.4 bits (77), Expect = 0.12
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 22/130 (16%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDS-----PLDVVVVNDSGGVKNASHLLKYDSLLGTF 140
+ ++I G G +G N LR + +VV V DS + +
Sbjct: 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKE 65
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA- 199
K + ++ E+IS RD DIV++ T DG +
Sbjct: 66 KGSLDSLEYESISAS-----EALARD----------FDIVVDATPASADGKKELAFYKET 110
Query: 200 -GAKKVIITA 208
K ++TA
Sbjct: 111 FENGKDVVTA 120
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 32.5 bits (74), Expect = 0.20
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSL 136
K V + G GR G LR + + ++ S + ++ SL
Sbjct: 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISL 57
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 32.6 bits (74), Expect = 0.21
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTF-KADV 144
++VAI G+G +GR+ + + D L V + + + + + + DV
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDL-VGIFSRRATLDTKTPVFDVADVDKHADDVDV 61
Query: 145 KIV 147
+
Sbjct: 62 LFL 64
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Length = 213
Score = 30.7 bits (70), Expect = 0.81
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 362 LAVCDVPLVSVD---FRCSDVSSTID------------SSLTMVMGDDMVKVVA-WYDNE 405
LA+ D PL ++D + + S T L ++G D + WY+
Sbjct: 62 LAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYE-- 119
Query: 406 WGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADE 446
+ ++D AHL+ + PG + + + + +
Sbjct: 120 ---YETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHN 157
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 30.4 bits (69), Expect = 0.96
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 362 LAVCDVPLVSVD---FRCSDVSSTID------------SSLTMVMGDDMVKVVA-WYDNE 405
AV V ++VD + S TID L M++G D + W+
Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHR-- 139
Query: 406 WGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEE 447
+ ++D H+V + P + + + AD +
Sbjct: 140 ---WEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQ 178
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 30.1 bits (68), Expect = 1.7
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 109 KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV------ 162
+ + + +VV +KN+S + + N+ + + + V
Sbjct: 606 RRNLVQPIVVGTGTKIKNSSA-----------EEGKNLAPNQQVLILSDKAEEVPDMYGW 654
Query: 163 SNRDPLQLPWAELGIDIVIEGTGVFVDG--PGAGKHIQAGAKKVIIT 207
+ L L I++ +G+G V A I+ KK+ +T
Sbjct: 655 TKETAETL-AKWLNIELEFQGSGSTVQKQDVRANTAIKDI-KKITLT 699
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative
splicing, phosphoprotein, protein complex, disease
mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Length = 70
Score = 27.6 bits (61), Expect = 2.0
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 337 EKKGITAEDVNAAFRKAAEGP 357
+KKG+T E+++ AF+++
Sbjct: 43 KKKGLTDEEIDMAFQQSGTAA 63
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 29.2 bits (65), Expect = 3.1
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 26/122 (21%)
Query: 174 ELGIDIVIEGTGVFVDGPG-AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA 232
E+GI + G G AG T + T ++G K+
Sbjct: 163 EIGIPVH------AFSCEGYKGVSQSAGHHIANNT-------VMTDIIGKGNKEQKKYSI 209
Query: 233 NIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLRRARAAALN 292
N++ + + + + E++G + TGD A++ ++ A A LN
Sbjct: 210 NVLGEYNIGGDAWE--MDRVLEKIGY-----HVNATLTGD-----ATYEKVQNADKADLN 257
Query: 293 IV 294
+V
Sbjct: 258 LV 259
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 28.8 bits (64), Expect = 4.2
Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 29/160 (18%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAI G G IG + + R L++ + G+ AS L +G V
Sbjct: 4 KLKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAM---VGIDAASDGLARAQRMG-----VT 54
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGT--GVFVDGPGAGKHIQAGAKK 203
V+G + ID V + T V + + G +
Sbjct: 55 TTYA---GVEGLIKLPEFA-----------DIDFVFDATSASAHVQNEALLRQAKPGIRL 100
Query: 204 VIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTT 242
+ +T A G P V VN ++ N+V+ T
Sbjct: 101 IDLTPAAIG---PYCVPVVNLEEHLGKLNVNMVTCGGQAT 137
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 27.9 bits (63), Expect = 4.3
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA 199
+ +++I ++ D I V + + ID+ ++G V ++ +
Sbjct: 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMS 61
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 28.4 bits (63), Expect = 4.9
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 18 IPSKTTHSFPTQCSTK--RLDVAEFAGLRANAGATYATGARDASFFDAVTAQL-TPKVAA 74
+ P S + L+ A T + S DA++A +
Sbjct: 217 VAGGDAVLTPVSASWAFFTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRV 276
Query: 75 GSVPVKKETVAKLKVAING 93
+ + A++
Sbjct: 277 RLERIDGSAPTEFCRAVDA 295
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 28.5 bits (64), Expect = 5.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV 117
+ +++A+ G GR G+N++R G + L +
Sbjct: 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLA 41
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 28.0 bits (63), Expect = 6.4
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDS----PLDVVVVNDSGGVKNASHLLKYDSLLGTFK 141
++++ + G G +G N LR + VV V+DS + +L + K
Sbjct: 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEK 63
Query: 142 ADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-- 199
+ + S L+ D++++ T DG +
Sbjct: 64 TG--RISDRAFSGPEDLMGE--------------AADLLVDCTPASRDGVREYSLYRMAF 107
Query: 200 GAKKVIITA 208
+ ++TA
Sbjct: 108 ESGMNVVTA 116
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 8.8
Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 30/184 (16%)
Query: 187 FVDGPGAG-------KH-IQAGAK-------------KVIITAPAKGADIPTYV-VGVNE 224
F++ GAG ++ G K+ + PA G I T +
Sbjct: 1177 FMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSS 1236
Query: 225 KDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQRLLDASHRDLR 284
Y N+ A ++ EL +K S DQ
Sbjct: 1237 VKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPS--EDQNEFLLE----- 1289
Query: 285 RARAAALNIVPTSTGAAKAVSLVMPQLKGKLNGIALRVPTPNVSVVDL-VVNVEKKGITA 343
R R A + + ++ + + T +++ DL V + A
Sbjct: 1290 RTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKA 1349
Query: 344 EDVN 347
D N
Sbjct: 1350 NDKN 1353
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 27.6 bits (62), Expect = 9.1
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 74 AGSVPVKKETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132
G++ + + +++ + G GR+GR + RKD L V+V S +
Sbjct: 9 MGTLEAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKG------SSFVD 62
Query: 133 YDS--LLGTFKADVKIVDN 149
D+ L+G+ V+I D+
Sbjct: 63 KDASILIGSDFLGVRITDD 81
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 27.2 bits (61), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
A +K+ + G+G + + R ++ ++V V ++ + Y + ADV
Sbjct: 2 ASMKILLIGYGAMNQRVARL---AEEKGHEIVGVIENTPKATTPYQQ-YQHIADVKGADV 57
Query: 145 KI 146
I
Sbjct: 58 AI 59
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 27.6 bits (60), Expect = 9.6
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 17/149 (11%)
Query: 87 LKVAINGFG----RIGRNFLRCWHGRKDSPLDVVVVN----DSGGVKN--ASHLLKYDSL 136
++ + G G + F + + VN D ++N + +D L
Sbjct: 43 IRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGL 102
Query: 137 LGTFKAD---VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
G + + D ET + ++ + E + + +
Sbjct: 103 KGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQ----FLICLGAG 158
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGV 222
G V+ + P ++
Sbjct: 159 GGVGTGWGSLVLQLIREQFFPCPVSMLIS 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,115,600
Number of extensions: 461554
Number of successful extensions: 1357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 82
Length of query: 453
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 356
Effective length of database: 3,993,456
Effective search space: 1421670336
Effective search space used: 1421670336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)