BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012942
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 2.40 A Resolution
pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 1.94 A Resolution
Length = 301
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 28/269 (10%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
+++H H+ FSDG +P LVE+A G+ +A+ DHDT +G EA E + G+ ++ G
Sbjct: 15 WDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGT 74
Query: 135 EISTIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 194
EI+ + + + VH LA+ PS E + + AN R R R K +
Sbjct: 75 EITAV-------DEDVSVHXLAFQYD--PSN-EHISSXFANTRAARLRRTKRXVERLSQD 124
Query: 195 XXXXXWEHVAKIA-GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPL 253
+ +A++ G+ GR H+A A+V AG E AFA + Y P
Sbjct: 125 FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPS 184
Query: 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV--------GLHGLEVYRSDGKLVD 305
+ + GG+ V AH +P R L D GL GLEV+
Sbjct: 185 THEVIAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVWHRG----- 236
Query: 306 VNFLEKIDNFLLLLCLRQITYTDLADTYG 334
N E+ + L + + T +D +G
Sbjct: 237 -NPPEQRERLLTIAARHDLLVTGGSDWHG 264
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And
Phosphate.
pdb|2YB4|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound So4, No
Metal
Length = 292
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 14/237 (5%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
+LH HS SDG L+P+++++RA +LALTDHD G+ EA A R G+ + GV
Sbjct: 4 IDLHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGV 63
Query: 135 EISTIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXX 194
E+S S VHI+ P++ L L +IR+GR RA+ M
Sbjct: 64 EVSV-------SWGRHTVHIVGL--GIDPAE-PALAAGLKSIREGRLERARQMGASLEAA 113
Query: 195 XXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 254
++ + R H AR +V++G V++++ F +YL G P Y +
Sbjct: 114 GIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASL 173
Query: 255 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVYRSDGKLVDVN 307
E AV I GG+AV+AHP +I +L + G G+EV L D++
Sbjct: 174 EDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMH 230
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S D S +KL+E+A G +A+TDH + PEA A++ GMK+I G
Sbjct: 118 ELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYG 177
Query: 134 VEISTI 139
+E + +
Sbjct: 178 LEANIV 183
>pdb|3E38|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
pdb|3E38|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
Length = 343
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDH--------DTMSGIPEAI----ETA 123
+ H HS FSDG + P+ V+ A+ +G+ ++LT+H D +S + E A
Sbjct: 22 DFHXHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQA 81
Query: 124 RRFGMKIIPGVEIS 137
+ G+ +I G EI+
Sbjct: 82 EKLGILLIKGSEIT 95
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT---MSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT---MSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT---MSGIPEAIETARRFG 127
V +L HS +SDG + +L E A G + LA+TDH ++G P E +R G
Sbjct: 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVG 394
>pdb|3EYW|A Chain A, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3EYW|B Chain B, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3L9W|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9W|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9X|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Esg
pdb|3L9X|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Esg
Length = 413
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 99 CNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEE 150
+GVK++ L DHD P+ IET R+FGMK+ G +S G+ E
Sbjct: 25 SSGVKMVVL-DHD-----PDHIETLRKFGMKVFYGDATRMDLLESAGAAKAE 70
>pdb|2ANU|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|C Chain C, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|D Chain D, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|E Chain E, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
pdb|2ANU|F Chain F, Crystal Structure Of Predicted Metal-Dependent
Phosphoesterase (Php Family) (Tm0559) From Thermotoga
Maritima At 2.40 A Resolution
Length = 255
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 27/90 (30%)
Query: 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDH---------DTMSGIPEAIETARRF 126
+ H H+N SDG+L ++V+ +GV V+++TDH +G P T +F
Sbjct: 23 DFHVHTNXSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKF 82
Query: 127 ------------------GMKIIPGVEIST 138
G +IPGVEI+
Sbjct: 83 QDYLKRLWREQKRAWEEYGXILIPGVEITN 112
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 77 LHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
L HS++S DG + LV++A G+ LA+TD + G+ + G+K I G
Sbjct: 9 LRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA 68
Query: 135 EISTIFCQSRGSE 147
+ + + C G E
Sbjct: 69 DFN-VQCDLLGDE 80
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 112 TMSGIPEAIETARRF-GMKIIPGVEISTIFCQSRGSESEEPVHILAYYSSCG 162
+M+G + ++ AR + +++IP + + Q E E P HILAYYS G
Sbjct: 526 SMTG-QDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAG 576
>pdb|3RJQ|A Chain A, Crystal Structure Of Anti-Hiv Llama Vhh Antibody A12 In
Complex With C186 Gp120
Length = 382
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 137 STIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMI 188
+T+FC S E+ VH + +C P+ E LAN+ + + DM+
Sbjct: 31 TTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLANVTENFNMWKNDMV 82
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 376 CGAIKEILESYADEPSDSNLSHIT 399
C A+K++ E+ ++EPS+SN+S ++
Sbjct: 36 CKALKQVFEAISNEPSNSNVSFLS 59
>pdb|3TGR|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade C Strain C1086
Gp120 Core
pdb|3TGR|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade C Strain C1086
Gp120 Core
pdb|3TGS|A Chain A, Crystal Structure Of Hiv-1 Clade C Strain C1086 Gp120 Core
In Complex With Nbd-556
pdb|3TGS|B Chain B, Crystal Structure Of Hiv-1 Clade C Strain C1086 Gp120 Core
In Complex With Nbd-556
Length = 358
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 137 STIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMI 188
+T+FC S E+ VH + +C P+ E LAN+ + + DM+
Sbjct: 7 TTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLANVTENFNMWKNDMV 58
>pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
Length = 578
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 77 LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD---------TMSGIPEAIETAR--- 124
+H+HS +SDG S ++ E G + L DH T+ + E ++ R
Sbjct: 331 IHTHSTWSDGGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQ 390
Query: 125 RFGMKIIPGVEISTI 139
R G+ I+ G E+ +
Sbjct: 391 RAGLPIVAGSEVDIL 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,088,131
Number of Sequences: 62578
Number of extensions: 464965
Number of successful extensions: 1076
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 20
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)