BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012942
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=trpH PE=3 SV=1
Length = 274
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
++LH HS SDG LSP++LV RA+ GV VLAL DHDT++GI EA A+ G+++I GV
Sbjct: 5 YDLHCHSTASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64
Query: 135 EISTIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKL 194
EIST + + RG +HI+ K L +R+ R + D KL K
Sbjct: 65 EISTNW-EGRG------IHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGD---KLEKA 114
Query: 195 KLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 254
+P ++ +A V R H AR +V+ G V N QAF RYL G A+
Sbjct: 115 GIPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWADI 172
Query: 255 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 286
A++ IH GG+A++AHP +RKL
Sbjct: 173 PTAIETIHAAGGIAIIAHPLRYNMTGKWVRKL 204
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=trpH PE=3 SV=3
Length = 293
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 70 DNN--VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127
D N V+++LHSH+ SDG L+P LV RA V LA+TDHDT + IP A E R G
Sbjct: 7 DTNYAVIYDLHSHTTASDGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSG 66
Query: 128 --MKIIPGVEISTIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAK 185
+ +IPGVEIST++ E+ E +HI+ + + +FLA + R R +
Sbjct: 67 LALNLIPGVEISTVW------ENHE-IHIVGLNIDIA---HPAMRDFLAQQTERRQARGR 116
Query: 186 DMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA 245
+ +L K +P WE ++A G A R H AR +VE G + F +YL G
Sbjct: 117 LIAERLEKAHIPGAWEGALRLANGG-AVTRGHFARFLVECGKAATMADVFKKYLARGKTG 175
Query: 246 YSTGSEPLAEVAVQLIHRTGGLAVLAHP 273
Y E A+ +IH +GG AVLAHP
Sbjct: 176 YVPPQWCTIEQAIDVIHHSGGKAVLAHP 203
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1
Length = 293
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 70 DNN--VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127
D N V+++LHSH+ SDG L+P LV RA V LA+TDHDT + I A E R G
Sbjct: 3 DTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSG 62
Query: 128 --MKIIPGVEISTIFCQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAK 185
+ +IPGVEIST++ E+ E +HI+ + + FLA + R RA+
Sbjct: 63 LALNLIPGVEISTVW------ENHE-IHIVGLNIDI---THPLMCEFLAQQTERRNQRAQ 112
Query: 186 DMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA 245
+ +L K ++P E ++A +G A R H AR +VE G ++ F +YL G
Sbjct: 113 LIAERLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTG 171
Query: 246 YSTGSEPLAEVAVQLIHRTGGLAVLAHP 273
Y E A+ +IH +GG AVLAHP
Sbjct: 172 YVPPQWCTIEQAIDVIHHSGGKAVLAHP 199
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3
SV=1
Length = 1428
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 61 VHQILNRAVDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPE 118
V Q ++ A ++ ELH+H+ S D +SP LVE+A G K +A+TDH + G P+
Sbjct: 314 VSQRMDDASEDKKRVELHTHTTMSQMDAVVSPEALVEQAAKWGHKAIAITDHAGVQGFPD 373
Query: 119 AIETARRFGMKIIPGVEISTI 139
A ++ G+K++ GVE + +
Sbjct: 374 AHNAGKKHGVKVLYGVEANLV 394
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain
Massachusetts / E88) GN=polC PE=3 SV=1
Length = 1427
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S DG S L++RA G K +A+TDH + PEA+E A+++ +KII G
Sbjct: 329 ELHLHTKMSAMDGMNSAESLIKRAAKWGHKAVAITDHGVVQAYPEAMEAAKKYNIKIIYG 388
Query: 134 VE 135
VE
Sbjct: 389 VE 390
>sp|Q73U92|DNAE2_MYCPA Error-prone DNA polymerase OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=dnaE2 PE=3 SV=1
Length = 1093
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 67 RAVDNNVVF-ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123
RA ++V + ELH+HS FS DG +P ++VE A ++ LALTDHD + G E A
Sbjct: 50 RAARSSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAA 109
Query: 124 RRFGMKIIPGVEISTIFCQSRGSESEEP--VHILAYYSSCGPSKYEELENFLA 174
++ + G E+S S +E+ +P H+L + GP Y L LA
Sbjct: 110 AELDVRTVFGAELS--LGPSARTEAPDPPGPHLLVL--ARGPEGYRRLSRQLA 158
>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2
PE=2 SV=4
Length = 1098
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 60 GVHQILNRA-VDNNVVF-ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115
G +Q R V ++V + ELH+HS +S DG +P +LVE A G+ LALTDHD + G
Sbjct: 49 GAYQPPGRERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYG 108
Query: 116 IPEAIETARRFGMKIIPGVEISTIFCQSRGSESEEP-VHILAYYSSCGPSKYEELENFLA 174
E A ++ + G E+S + +R + P H+L + GP Y L LA
Sbjct: 109 AVRFAEAAAELDVRTVFGAELS-LGATARTERPDPPGPHLLVL--ARGPEGYRRLSRQLA 165
>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2
Length = 1091
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 60 GVHQILNRA-VDNNVVF-ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115
G +Q R V ++V + ELH+HS +S DG +P +LVE A G+ LALTDHD + G
Sbjct: 42 GAYQPPGRERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYG 101
Query: 116 IPEAIETARRFGMKIIPGVEISTIFCQSRGSESEEP-VHILAYYSSCGPSKYEELENFLA 174
E A ++ + G E+S + +R + P H+L + GP Y L LA
Sbjct: 102 AVRFAEAAAELDVRTVFGAELS-LGATARTERPDPPGPHLLVL--ARGPEGYRRLSRQLA 158
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S D S +++++RA G K +A+TDH + PEA+E +R +G+K+I G
Sbjct: 304 ELHLHTQMSTLDAVPSATEVIKRAAEWGHKAVAITDHAVVQAFPEAMEASREYGVKVIYG 363
Query: 134 VE 135
+E
Sbjct: 364 ME 365
>sp|Q5Z1D1|DNAE2_NOCFA Error-prone DNA polymerase OS=Nocardia farcinica (strain IFM 10152)
GN=dnaE2 PE=3 SV=1
Length = 1146
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 67 RAVDNNVV--FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122
R VD V ELH+HS +S DG P +LVE A G++ +ALTDHD G E
Sbjct: 53 RPVDRPTVPYAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEA 112
Query: 123 ARRFGMKIIPGVEIS 137
A+ +G+ + G E+S
Sbjct: 113 AKEWGIATVFGAELS 127
>sp|Q6A780|DNAE2_PROAC Error-prone DNA polymerase OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=dnaE2 PE=3 SV=1
Length = 1134
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS++S DG +P LV RA G+ LALTDHD + G+ E A G+ I G
Sbjct: 59 ELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTIIG 118
Query: 134 VEISTIFCQSRGSESEEPV--HILAYYSSCGPSKYEELENFLAN 175
E+S + + + +PV H+L + GP Y L L +
Sbjct: 119 SELSIGVPEPQNGVA-DPVGSHLLVLAN--GPEGYRRLAEALTD 159
>sp|A5VJD5|DPO3_LACRD DNA polymerase III PolC-type OS=Lactobacillus reuteri (strain DSM
20016) GN=polC PE=3 SV=1
Length = 1443
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 66 NRAVDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123
++A ++ ELH+H+ S D S ++L RAH G +A+TDH + PEA A
Sbjct: 331 DKAPQDDKRVELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVA 390
Query: 124 RRFGMKIIPGVEISTI 139
++ G+K++ G+E + +
Sbjct: 391 QKTGIKMLYGMEANVV 406
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13
/ Type A) GN=polC PE=3 SV=1
Length = 1449
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S D + SK+VERA G K +A+TDH + P+A A++ +K+I G
Sbjct: 351 ELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIYG 410
Query: 134 VE 135
VE
Sbjct: 411 VE 412
>sp|B0RY89|DNAE2_XANCB Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=dnaE2 PE=3 SV=1
Length = 1082
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH S+FS G S +L RAH G LA+TD +++GI +E +R G+++I G
Sbjct: 50 ELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVRLIVG 109
Query: 134 VEISTIFC 141
E + I C
Sbjct: 110 SEFTLIDC 117
>sp|P0C0B7|DPO3_STRPY DNA polymerase III PolC-type OS=Streptococcus pyogenes GN=polC PE=3
SV=1
Length = 1465
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+N S D + L++ A G K +A+TDH + P AR+ G+K I G
Sbjct: 342 ELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIFG 401
Query: 134 VEISTIFCQSRGSESEEPVHILAYYSSCGPSKYE 167
+E + + + + S EPV + + CG S E
Sbjct: 402 LEANIV--EDKVPISYEPVDMDLHEDLCGLSDVE 433
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
E H+H+N S D S S LV +A G K +A+TDH + PEA ++ G+KII G
Sbjct: 511 EFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIYG 570
Query: 134 VEISTI 139
VE + +
Sbjct: 571 VEANLV 576
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 66 NRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR 125
++A D V F LH+ + DG + S VE+A G + LA+TDH+ + P+A A +
Sbjct: 329 DKAEDKRVEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEK 388
Query: 126 FGMKIIPGVE 135
G+K+I G+E
Sbjct: 389 HGIKMIYGME 398
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 66 NRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR 125
++A D V F LH+ + DG + S VE+A G + LA+TDH+ + P+A A +
Sbjct: 333 DKAEDKRVEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEK 392
Query: 126 FGMKIIPGVE 135
G+K+I G+E
Sbjct: 393 HGIKMIYGME 402
>sp|Q7UXK9|DNAE2_RHOBA Error-prone DNA polymerase OS=Rhodopirellula baltica (strain SH1)
GN=dnaE2 PE=3 SV=1
Length = 1145
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS DG P +LV+RA G + LA+TD ++++G+ A+ G++ I G
Sbjct: 107 ELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQYIVG 166
Query: 134 VEI 136
E+
Sbjct: 167 TEV 169
>sp|Q4KAD4|DNAE2_PSEF5 Error-prone DNA polymerase OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=dnaE2 PE=3 SV=1
Length = 1034
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G S ++L +RA G + LA+TD T++GI A + +R G+K+I G
Sbjct: 6 ELHCLSNFSFQRGASSAAELFQRAKALGYQALAITDECTLAGIVRAWQASRDTGLKLIVG 65
Query: 134 VEIST 138
E+
Sbjct: 66 SEMQV 70
>sp|Q49X49|DPO3_STAS1 DNA polymerase III PolC-type OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=polC
PE=3 SV=1
Length = 1438
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 66 NRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR 125
++A D V F LH+ + DG + S V++A G K +A+TDH+ + P+A A +
Sbjct: 329 DKAEDKRVEFHLHTSMSQMDGIPNISDYVDQAAKWGHKAIAVTDHNVVQAFPDAHSAAEK 388
Query: 126 FGMKIIPGVE 135
G+K+I G+E
Sbjct: 389 NGIKMIYGME 398
>sp|Q47EP3|DNAE2_DECAR Error-prone DNA polymerase OS=Dechloromonas aromatica (strain RCB)
GN=dnaE2 PE=3 SV=1
Length = 1027
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G P +L RA G LALTD +++G+ A A++ G+K I G
Sbjct: 8 ELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKHGLKFIVG 67
Query: 134 VEISTI 139
E+ T+
Sbjct: 68 SEMMTV 73
>sp|Q58691|Y1295_METJA Uncharacterized protein MJ1295 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1295 PE=4 SV=1
Length = 218
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE--TARRFGMK--- 129
F+ H+H+ FSDG L P++LV RA + +A+TDH S E IE T + +K
Sbjct: 3 FDFHTHTVFSDGELIPAELVRRARVLKHRAIAITDHADFSNYKELIEKTTIAKEELKKYW 62
Query: 130 ----IIPGVEISTIFCQS 143
+I GVE++ I +S
Sbjct: 63 DDIIVIVGVELTHIPPKS 80
>sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas mendocina (strain ymp)
GN=dnaE2 PE=3 SV=1
Length = 1026
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G S +L ERA G + LA+TD T++GI A + AR G+ +I G
Sbjct: 7 ELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETGLALIVG 66
Query: 134 VEI 136
E+
Sbjct: 67 SEM 69
>sp|Q1WUF9|DPO3_LACS1 DNA polymerase III PolC-type OS=Lactobacillus salivarius (strain
UCC118) GN=polC PE=3 SV=1
Length = 1444
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 66 NRAVDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123
+ A +N ELH HSN S D S ++ V +A G K +A+TDH T+ PEA
Sbjct: 331 DTAPENEKRVELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAG 390
Query: 124 RRFGMKIIPGVEISTI 139
++ +KI+ GVE + +
Sbjct: 391 QKNNVKILYGVEANIV 406
>sp|Q9KA72|DPO3_BACHD DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=polC PE=3 SV=1
Length = 1433
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 66 NRAVDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123
+ A D+ ELH H+ S DG S V +A G K +A+TDH + PEA +
Sbjct: 324 DEAPDDEKRVELHLHTAMSQMDGISSAGAYVTQASKWGHKAIAITDHGVVQAFPEAYGAS 383
Query: 124 RRFGMKIIPGVEISTI 139
++ G+K+I GVE + +
Sbjct: 384 QKHGIKVIYGVEANLV 399
>sp|P13267|DPO3_BACSU DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168)
GN=polC PE=1 SV=2
Length = 1437
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS S D KLVE+A G + +ALTDH + P+A A++ G+K+I G
Sbjct: 336 ELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIYG 395
Query: 134 VEISTI 139
+E + +
Sbjct: 396 MEANLV 401
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 67 RAVDNNVV--FELHSHSNFSD--GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122
+ +DN+ V ELH+H+ FSD ++ V+RA G +ALTDH + IP +
Sbjct: 261 KRMDNSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAVALTDHGNVQAIPYFYDA 320
Query: 123 ARRFGMKIIPGVEISTIFCQSRGSESEEPVHILAYYSS 160
A+ G+K I G+E + S+ E + L+Y SS
Sbjct: 321 AKEAGIKPIFGIEAYLV------SDVEPVIRNLSYDSS 352
>sp|Q038M0|DPO3_LACC3 DNA polymerase III PolC-type OS=Lactobacillus casei (strain ATCC
334) GN=polC PE=3 SV=1
Length = 1444
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+N S D S V+RA G K +A+TDH + PEA A + G+K++ G
Sbjct: 335 ELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLYG 394
Query: 134 VEISTI 139
VEI+ +
Sbjct: 395 VEINLV 400
>sp|P0DA77|DPO3_STRPQ DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=polC PE=3 SV=1
Length = 1465
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+N S D L+ L++ A G K +A+TDH + P AR+ G+K I G
Sbjct: 342 ELHAHTNMSTMDALLTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIFG 401
Query: 134 VEISTI 139
+E + +
Sbjct: 402 LEANIV 407
>sp|P0DA76|DPO3_STRP3 DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=polC PE=3 SV=1
Length = 1465
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+N S D L+ L++ A G K +A+TDH + P AR+ G+K I G
Sbjct: 342 ELHAHTNMSTMDALLTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIFG 401
Query: 134 VEISTI 139
+E + +
Sbjct: 402 LEANIV 407
>sp|Q4ZTG0|DNAE2_PSEU2 Error-prone DNA polymerase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G S +L ERA +G K LA+TD T++GI A + ++ G+ +I G
Sbjct: 7 ELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGLPLIVG 66
Query: 134 VEI 136
E+
Sbjct: 67 SEM 69
>sp|Q8PBL8|DNAE2_XANCP Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dnaE2 PE=3
SV=2
Length = 1082
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH S+FS G S +L RAH G LA+TD +++GI +E +R G+++I G
Sbjct: 50 ELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLIVG 109
Query: 134 VEISTI 139
E + +
Sbjct: 110 SEFTLV 115
>sp|Q4URY1|DNAE2_XANC8 Error-prone DNA polymerase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=dnaE2 PE=3 SV=2
Length = 1082
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH S+FS G S +L RAH G LA+TD +++GI +E +R G+++I G
Sbjct: 50 ELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQLIVG 109
Query: 134 VEISTI 139
E + +
Sbjct: 110 SEFTLV 115
>sp|Q8FRX6|DNAE2_COREF Error-prone DNA polymerase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=dnaE2 PE=3 SV=1
Length = 1073
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 76 ELHSHS--NFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+ S NF G P ++V+RAH G+ LAL D D + G E A G+ + G
Sbjct: 79 ELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLATVFG 138
Query: 134 VEIS------TIFCQSRGSE 147
E+S T+ C RG E
Sbjct: 139 AELSLREGVLTVLC--RGVE 156
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS S D S L ++A G K +A+TDH PEA +++G+K+I G
Sbjct: 343 ELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFG 402
Query: 134 VEISTI 139
+E + I
Sbjct: 403 IEANLI 408
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS S D S L ++A G K +A+TDH PEA +++G+K+I G
Sbjct: 343 ELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFG 402
Query: 134 VEISTI 139
+E + I
Sbjct: 403 IEANLI 408
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS S D S L ++A G K +A+TDH PEA +++G+K+I G
Sbjct: 343 ELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFG 402
Query: 134 VEISTI 139
+E + I
Sbjct: 403 IEANLI 408
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH HS S D S L ++A G K +A+TDH PEA +++G+K+I G
Sbjct: 343 ELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFG 402
Query: 134 VEISTI 139
+E + I
Sbjct: 403 IEANLI 408
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 76 ELHSHSNFSD--GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+ FSD ++ V+RA G +ALTDH + IP + A+ G+K I G
Sbjct: 272 ELHAHTKFSDQDAITDVNEYVKRAKEWGFPAIALTDHGNVQAIPYFYDAAKEAGIKPIFG 331
Query: 134 VE 135
+E
Sbjct: 332 IE 333
>sp|A6VAU7|DNAE2_PSEA7 Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain PA7)
GN=dnaE2 PE=3 SV=1
Length = 1024
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G S ++L RA G + LA+TD +++GI A + AR + +K++ G
Sbjct: 6 ELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREYRVKLLVG 65
Query: 134 VEI 136
EI
Sbjct: 66 SEI 68
>sp|P0C0B8|DPO3_STRP1 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M1
GN=polC PE=3 SV=1
Length = 1465
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+N S D + L++ A G K +A+TDH + P AR+ G+K I G
Sbjct: 342 ELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIFG 401
Query: 134 VEISTIFCQSRGSESEEPVHI 154
+E + + + + S EPV +
Sbjct: 402 LEANIV--EDKVPISYEPVDM 420
>sp|B2UJ29|DNAE2_RALPJ Error-prone DNA polymerase OS=Ralstonia pickettii (strain 12J)
GN=dnaE2 PE=3 SV=1
Length = 1079
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNF+ G PS+LVERA G + LALTD +++G A+ ++ +K+I G
Sbjct: 15 ELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELKLIIG 74
Query: 134 VEIST 138
+
Sbjct: 75 SRFTV 79
>sp|A2RGI3|DPO3_STRPG DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=polC PE=3 SV=1
Length = 1465
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH+H+N S D + L++ A G K +A+TDH + P AR+ G+K I G
Sbjct: 342 ELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIFG 401
Query: 134 VEISTIFCQSRGSESEEPVHI 154
+E + + + + S +PV +
Sbjct: 402 LEANIV--EDKAPISYDPVDM 420
>sp|A4VXT1|DPO3_STRSY DNA polymerase III PolC-type OS=Streptococcus suis (strain 05ZYH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
E H+H+N S D + LV RA G K +A+TDH + P AR+ G+K + G
Sbjct: 340 EFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLFG 399
Query: 134 VEISTI 139
+E + +
Sbjct: 400 MEANIV 405
>sp|A4W428|DPO3_STRS2 DNA polymerase III PolC-type OS=Streptococcus suis (strain 98HAH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
E H+H+N S D + LV RA G K +A+TDH + P AR+ G+K + G
Sbjct: 340 EFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLFG 399
Query: 134 VEISTI 139
+E + +
Sbjct: 400 MEANIV 405
>sp|Q8PN74|DNAE2_XANAC Error-prone DNA polymerase OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dnaE2 PE=3 SV=2
Length = 1083
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH S+FS G S +L RA G LA+TD +++GI +E +R G+++I G
Sbjct: 50 ELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEASRATGVRLIVG 109
Query: 134 VEISTI 139
E + +
Sbjct: 110 SEFTLV 115
>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=polC PE=3 SV=1
Length = 1435
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH H+ S D SKLV +A G + +A+TDH PEA ++ G+K+I G
Sbjct: 335 ELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIYG 394
Query: 134 VEISTI 139
VE + +
Sbjct: 395 VEANLV 400
>sp|Q4L5W6|DPO3_STAHJ DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=polC PE=3 SV=1
Length = 1438
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 66 NRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR 125
++A + V F LH+ + DG + S V +A G K +A+TDH+ + P+A A +
Sbjct: 329 DKAEEKRVEFHLHTSMSQMDGIPNISAYVNQAAKWGHKAIAVTDHNVVQAFPDAHGAAEK 388
Query: 126 FGMKIIPGVE 135
G+K+I G+E
Sbjct: 389 NGIKMIYGME 398
>sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas putida (strain KT2440)
GN=dnaE2 PE=3 SV=1
Length = 1033
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133
ELH SNFS G S +L RA G + LA+TD T++GI A + A+ +++I G
Sbjct: 15 ELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLIVG 74
Query: 134 VEIS 137
E+
Sbjct: 75 SEVQ 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,601,650
Number of Sequences: 539616
Number of extensions: 7701391
Number of successful extensions: 25436
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 25107
Number of HSP's gapped (non-prelim): 359
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)