Query 012942
Match_columns 453
No_of_seqs 275 out of 2077
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 3.5E-39 7.5E-44 317.7 22.1 249 72-348 1-251 (258)
2 PRK00448 polC DNA polymerase I 99.8 3.3E-20 7.2E-25 216.3 6.5 209 71-339 331-562 (1437)
3 PRK09248 putative hydrolase; V 99.8 1.7E-18 3.7E-23 169.0 16.4 182 72-356 2-202 (246)
4 PF02811 PHP: PHP domain; Int 99.7 1.1E-15 2.3E-20 139.0 15.4 78 75-159 1-80 (175)
5 TIGR00375 conserved hypothetic 99.7 9.8E-16 2.1E-20 157.9 14.4 178 75-356 2-198 (374)
6 smart00481 POLIIIAc DNA polyme 99.7 3.6E-16 7.9E-21 123.1 8.4 64 76-139 1-66 (67)
7 PRK05672 dnaE2 error-prone DNA 99.6 7.4E-15 1.6E-19 168.5 19.4 118 73-208 4-123 (1046)
8 PRK09532 DNA polymerase III su 99.6 2.4E-14 5.3E-19 161.8 19.7 102 72-175 1-104 (874)
9 PRK08392 hypothetical protein; 99.6 2.7E-14 5.7E-19 137.1 16.9 66 75-140 1-73 (215)
10 PRK07328 histidinol-phosphatas 99.5 2.1E-13 4.4E-18 135.2 16.4 68 72-139 1-90 (269)
11 PRK07135 dnaE DNA polymerase I 99.5 5.4E-14 1.2E-18 159.6 9.8 91 74-177 3-95 (973)
12 PRK05673 dnaE DNA polymerase I 99.5 1.2E-12 2.6E-17 151.5 18.9 101 74-176 2-105 (1135)
13 TIGR00594 polc DNA-directed DN 99.4 2.8E-12 6E-17 147.5 19.6 101 74-176 1-107 (1022)
14 PRK00912 ribonuclease P protei 99.4 1.4E-12 2.9E-17 127.0 14.4 64 72-138 1-65 (237)
15 PRK06826 dnaE DNA polymerase I 99.4 3.6E-12 7.8E-17 147.5 19.6 103 72-176 3-110 (1151)
16 PRK06361 hypothetical protein; 99.4 4E-12 8.6E-17 121.3 16.1 61 79-139 1-69 (212)
17 TIGR01856 hisJ_fam histidinol 99.4 5.4E-12 1.2E-16 124.0 16.2 65 75-139 1-87 (253)
18 PRK08123 histidinol-phosphatas 99.4 9.4E-12 2E-16 123.5 18.0 68 72-139 1-93 (270)
19 PRK07279 dnaE DNA polymerase I 99.4 2.2E-12 4.7E-17 147.3 12.4 95 73-176 1-97 (1034)
20 COG0587 DnaE DNA polymerase II 99.4 6.3E-12 1.4E-16 144.3 16.1 118 72-204 2-121 (1139)
21 PRK07945 hypothetical protein; 99.4 3.4E-12 7.3E-17 130.7 12.5 70 71-140 94-177 (335)
22 COG1387 HIS2 Histidinol phosph 99.4 7.8E-12 1.7E-16 122.2 14.0 69 73-141 1-80 (237)
23 PRK05898 dnaE DNA polymerase I 99.3 2.7E-12 5.8E-17 145.3 11.0 95 73-178 1-97 (971)
24 TIGR01405 polC_Gram_pos DNA po 99.3 2.4E-12 5.1E-17 149.5 9.9 74 69-142 99-174 (1213)
25 PRK08609 hypothetical protein; 99.3 2.2E-11 4.7E-16 132.8 16.7 71 70-140 331-415 (570)
26 PRK06920 dnaE DNA polymerase I 99.3 1.8E-11 3.8E-16 141.1 16.7 116 73-209 2-119 (1107)
27 PRK07374 dnaE DNA polymerase I 99.3 3.9E-12 8.4E-17 147.3 11.4 103 73-177 2-108 (1170)
28 PRK05588 histidinol-phosphatas 99.3 5.1E-11 1.1E-15 117.1 12.5 65 74-139 1-76 (255)
29 COG1379 PHP family phosphoeste 99.1 8.2E-10 1.8E-14 110.5 11.9 200 72-369 2-221 (403)
30 PRK07329 hypothetical protein; 99.0 2E-09 4.4E-14 105.6 11.2 62 74-139 1-78 (246)
31 COG2176 PolC DNA polymerase II 99.0 5.9E-10 1.3E-14 125.8 8.2 74 69-142 331-406 (1444)
32 PRK06740 histidinol-phosphatas 98.8 4.8E-08 1E-12 100.1 13.9 27 85-111 58-84 (331)
33 COG4464 CapC Capsular polysacc 98.4 4.4E-06 9.5E-11 80.1 12.5 66 74-139 1-84 (254)
34 PF13263 PHP_C: PHP-associated 96.9 0.00059 1.3E-08 52.2 2.6 28 325-357 6-33 (56)
35 TIGR00010 hydrolase, TatD fami 88.7 0.82 1.8E-05 43.8 5.6 61 74-136 1-61 (252)
36 PF12228 DUF3604: Protein of u 88.6 0.37 8E-06 53.1 3.4 48 71-118 5-72 (592)
37 COG0084 TatD Mg-dependent DNas 88.4 1.1 2.3E-05 44.9 6.2 55 72-127 1-55 (256)
38 cd01292 metallo-dependent_hydr 87.0 18 0.00039 33.9 13.6 74 253-346 162-238 (275)
39 PRK10812 putative DNAse; Provi 83.1 2.5 5.4E-05 42.2 5.9 55 72-127 1-58 (265)
40 PF10566 Glyco_hydro_97: Glyco 80.8 5.2 0.00011 40.4 7.2 81 250-348 71-160 (273)
41 PF01026 TatD_DNase: TatD rela 79.0 3.5 7.6E-05 40.5 5.3 61 75-136 1-61 (255)
42 PRK13125 trpA tryptophan synth 77.6 5.2 0.00011 39.3 6.0 58 75-132 75-134 (244)
43 PRK11449 putative deoxyribonuc 77.3 4.9 0.00011 39.9 5.8 55 72-127 3-57 (258)
44 PRK10425 DNase TatD; Provision 75.8 5.5 0.00012 39.6 5.7 53 74-127 1-53 (258)
45 cd01310 TatD_DNAse TatD like p 73.7 8.1 0.00018 36.8 6.1 58 74-133 1-58 (251)
46 COG0613 Predicted metal-depend 68.1 2.4 5.3E-05 42.2 1.1 78 251-346 97-178 (258)
47 COG5016 Pyruvate/oxaloacetate 64.2 22 0.00048 38.0 7.2 51 89-139 99-150 (472)
48 cd01295 AdeC Adenine deaminase 63.9 13 0.00029 39.3 5.8 61 72-134 9-74 (422)
49 COG1902 NemA NADH:flavin oxido 62.8 15 0.00033 38.6 5.8 24 252-275 83-108 (363)
50 COG0826 Collagenase and relate 61.7 19 0.00041 37.6 6.3 66 252-342 49-121 (347)
51 cd02930 DCR_FMN 2,4-dienoyl-Co 60.8 20 0.00043 37.1 6.3 25 252-276 77-103 (353)
52 TIGR01975 isoAsp_dipep isoaspa 60.2 2.3E+02 0.005 29.9 14.9 35 72-106 56-95 (389)
53 PRK12581 oxaloacetate decarbox 59.5 46 0.00099 36.3 8.9 49 90-138 107-156 (468)
54 PRK07228 N-ethylammeline chlor 59.1 25 0.00054 37.1 6.8 64 72-137 56-148 (445)
55 PRK09856 fructoselysine 3-epim 58.6 32 0.00069 33.6 7.1 51 279-341 15-67 (275)
56 PF06375 BLVR: Bovine leukaemi 58.4 3.3 7.1E-05 38.4 0.0 20 9-28 83-102 (154)
57 PRK09997 hydroxypyruvate isome 56.6 26 0.00057 34.1 6.1 42 279-339 17-58 (258)
58 TIGR03234 OH-pyruv-isom hydrox 54.9 29 0.00063 33.5 6.0 44 279-341 16-59 (254)
59 PRK13111 trpA tryptophan synth 53.2 1.3E+02 0.0028 30.1 10.4 52 252-304 104-156 (258)
60 PRK13523 NADPH dehydrogenase N 51.7 33 0.00072 35.5 6.1 24 252-275 81-106 (337)
61 PRK10605 N-ethylmaleimide redu 51.7 32 0.00068 36.0 6.0 13 286-298 168-180 (362)
62 TIGR01501 MthylAspMutase methy 48.7 53 0.0011 29.7 6.2 42 87-128 38-81 (134)
63 TIGR00640 acid_CoA_mut_C methy 48.2 36 0.00078 30.4 5.0 43 85-127 37-81 (132)
64 cd04747 OYE_like_5_FMN Old yel 48.0 41 0.0009 35.2 6.2 23 253-275 79-103 (361)
65 cd03309 CmuC_like CmuC_like. P 47.6 1.1E+02 0.0025 31.4 9.2 46 252-299 198-243 (321)
66 PRK09358 adenosine deaminase; 46.3 18 0.0004 36.8 3.2 31 71-104 9-39 (340)
67 cd04735 OYE_like_4_FMN Old yel 45.9 46 0.001 34.5 6.1 23 253-275 79-103 (353)
68 cd04734 OYE_like_3_FMN Old yel 45.2 45 0.00098 34.5 5.9 23 253-275 78-102 (343)
69 TIGR00262 trpA tryptophan synt 44.7 1.6E+02 0.0035 29.2 9.5 103 182-338 24-144 (256)
70 COG0800 Eda 2-keto-3-deoxy-6-p 44.3 96 0.0021 30.3 7.5 50 254-304 3-52 (211)
71 PRK09989 hypothetical protein; 43.3 54 0.0012 31.9 5.9 40 280-339 18-58 (258)
72 PF01081 Aldolase: KDPG and KH 42.9 37 0.00081 32.6 4.5 45 85-134 64-108 (196)
73 PTZ00124 adenosine deaminase; 42.6 22 0.00047 37.3 3.1 30 72-104 35-64 (362)
74 PF02679 ComA: (2R)-phospho-3- 42.4 63 0.0014 32.2 6.1 67 254-338 56-130 (244)
75 PRK08508 biotin synthase; Prov 41.9 1.2E+02 0.0025 30.4 8.1 39 255-295 78-117 (279)
76 PRK06256 biotin synthase; Vali 41.8 93 0.002 31.7 7.6 41 254-296 128-168 (336)
77 PF00724 Oxidored_FMN: NADH:fl 41.3 57 0.0012 33.6 6.0 22 253-274 81-104 (341)
78 PRK15108 biotin synthase; Prov 41.2 1.3E+02 0.0029 31.1 8.7 40 254-296 113-152 (345)
79 TIGR00506 ribB 3,4-dihydroxy-2 40.9 70 0.0015 30.9 6.0 58 268-342 129-194 (199)
80 PRK06552 keto-hydroxyglutarate 40.6 41 0.00089 32.6 4.5 46 85-135 72-117 (213)
81 TIGR01182 eda Entner-Doudoroff 40.0 39 0.00085 32.7 4.2 45 85-134 64-108 (204)
82 cd02803 OYE_like_FMN_family Ol 39.9 39 0.00084 34.2 4.4 13 286-298 150-162 (327)
83 PRK10027 cryptic adenine deami 39.8 42 0.00091 37.6 5.0 63 72-136 84-151 (588)
84 cd02931 ER_like_FMN Enoate red 39.5 59 0.0013 34.2 5.8 21 253-273 84-106 (382)
85 PRK00014 ribB 3,4-dihydroxy-2- 39.1 79 0.0017 31.3 6.2 58 268-342 144-209 (230)
86 cd04733 OYE_like_2_FMN Old yel 39.0 68 0.0015 33.0 6.1 44 254-297 84-169 (338)
87 cd02072 Glm_B12_BD B12 binding 39.0 96 0.0021 27.8 6.2 42 87-128 36-79 (128)
88 cd02933 OYE_like_FMN Old yello 38.7 67 0.0014 33.2 6.0 12 286-297 161-172 (338)
89 PF00962 A_deaminase: Adenosin 38.3 29 0.00063 35.0 3.2 29 72-103 2-30 (331)
90 PF08288 PIGA: PIGA (GPI ancho 38.0 31 0.00067 29.2 2.7 33 76-112 53-85 (90)
91 PRK01792 ribB 3,4-dihydroxy-2- 38.0 83 0.0018 30.8 6.1 58 268-342 139-204 (214)
92 cd02932 OYE_YqiM_FMN Old yello 37.9 66 0.0014 33.0 5.8 23 253-275 78-102 (336)
93 COG0159 TrpA Tryptophan syntha 37.9 2.2E+02 0.0047 28.8 9.2 37 280-335 112-148 (265)
94 TIGR03849 arch_ComA phosphosul 37.8 1.2E+02 0.0025 30.3 7.1 70 254-338 43-117 (237)
95 PRK00910 ribB 3,4-dihydroxy-2- 37.5 87 0.0019 30.7 6.2 58 268-342 140-205 (218)
96 PF07643 DUF1598: Protein of u 37.4 43 0.00094 28.0 3.4 54 163-227 7-65 (84)
97 PRK13209 L-xylulose 5-phosphat 36.9 80 0.0017 31.0 6.0 44 279-339 23-75 (283)
98 COG0399 WecE Predicted pyridox 36.5 2E+02 0.0043 30.5 9.1 72 250-338 80-153 (374)
99 PRK14042 pyruvate carboxylase 36.4 79 0.0017 35.5 6.4 49 90-138 98-147 (596)
100 cd00952 CHBPH_aldolase Trans-o 35.6 2.5E+02 0.0053 28.6 9.5 95 252-369 58-161 (309)
101 cd02929 TMADH_HD_FMN Trimethyl 34.6 78 0.0017 33.1 5.8 13 286-298 159-171 (370)
102 PRK13210 putative L-xylulose 5 34.2 1.1E+02 0.0024 29.9 6.5 52 280-339 19-70 (284)
103 TIGR01212 radical SAM protein, 34.1 1.1E+02 0.0024 31.0 6.6 58 237-296 81-143 (302)
104 PRK10657 isoaspartyl dipeptida 34.0 1.1E+02 0.0024 31.5 6.7 60 72-133 56-127 (388)
105 PF13704 Glyco_tranf_2_4: Glyc 34.0 1.1E+02 0.0024 24.7 5.6 33 90-122 7-39 (97)
106 PRK08203 hydroxydechloroatrazi 33.7 1E+02 0.0022 32.7 6.6 63 72-136 59-157 (451)
107 PLN03059 beta-galactosidase; P 33.7 60 0.0013 37.9 5.0 62 271-339 51-116 (840)
108 TIGR02967 guan_deamin guanine 32.6 1.2E+02 0.0025 31.6 6.7 40 95-136 97-138 (401)
109 PRK05628 coproporphyrinogen II 32.5 1.7E+02 0.0037 30.3 7.9 55 238-296 64-124 (375)
110 cd00954 NAL N-Acetylneuraminic 32.4 3.6E+02 0.0077 26.9 9.9 82 265-369 69-154 (288)
111 cd05017 SIS_PGI_PMI_1 The memb 32.4 97 0.0021 26.5 5.1 38 89-132 58-95 (119)
112 PRK05904 coproporphyrinogen II 31.9 1.8E+02 0.004 30.2 8.0 55 238-296 61-119 (353)
113 TIGR03128 RuMP_HxlA 3-hexulose 31.5 1.2E+02 0.0027 28.3 6.1 52 72-133 54-108 (206)
114 PF01301 Glyco_hydro_35: Glyco 31.3 42 0.00091 34.5 3.1 59 271-338 16-80 (319)
115 PRK07094 biotin synthase; Prov 31.2 2.3E+02 0.0051 28.5 8.5 40 254-295 105-144 (323)
116 smart00812 Alpha_L_fucos Alpha 31.1 1.1E+02 0.0023 32.5 6.1 51 86-138 79-150 (384)
117 PRK07114 keto-hydroxyglutarate 30.9 71 0.0015 31.3 4.4 44 86-134 76-119 (222)
118 TIGR01430 aden_deam adenosine 30.9 46 0.00099 33.7 3.2 30 73-105 2-31 (324)
119 PF01120 Alpha_L_fucos: Alpha- 30.6 87 0.0019 32.4 5.3 54 83-138 86-160 (346)
120 PRK06294 coproporphyrinogen II 30.0 1.8E+02 0.0039 30.3 7.6 55 238-296 63-119 (370)
121 PRK05718 keto-hydroxyglutarate 29.4 2.4E+02 0.0052 27.4 7.7 47 254-301 5-51 (212)
122 PRK01060 endonuclease IV; Prov 29.3 1.8E+02 0.0038 28.5 7.0 20 279-298 14-33 (281)
123 PRK02083 imidazole glycerol ph 29.1 2.2E+02 0.0048 27.8 7.6 48 85-132 150-202 (253)
124 COG2355 Zn-dependent dipeptida 28.4 4.7E+02 0.01 27.1 10.0 19 184-202 151-169 (313)
125 PRK13813 orotidine 5'-phosphat 28.3 1.1E+02 0.0023 29.1 5.1 59 72-137 55-116 (215)
126 PF01261 AP_endonuc_2: Xylose 27.9 51 0.0011 30.0 2.8 44 284-339 2-45 (213)
127 TIGR00539 hemN_rel putative ox 27.8 2.2E+02 0.0048 29.4 7.8 28 267-296 89-116 (360)
128 PTZ00170 D-ribulose-5-phosphat 27.7 2.2E+02 0.0048 27.7 7.3 57 72-138 65-123 (228)
129 cd06556 ICL_KPHMT Members of t 27.6 2.8E+02 0.006 27.4 8.0 70 254-346 114-206 (240)
130 PRK09228 guanine deaminase; Pr 27.5 1.6E+02 0.0034 31.4 6.7 40 96-137 123-164 (433)
131 PRK08883 ribulose-phosphate 3- 27.4 3.8E+02 0.0083 26.0 8.9 71 253-343 69-139 (220)
132 PF13594 Amidohydro_5: Amidohy 27.3 49 0.0011 25.5 2.1 34 72-105 34-68 (68)
133 PRK06380 metal-dependent hydro 27.2 1.6E+02 0.0035 30.7 6.7 61 72-136 54-142 (418)
134 cd01320 ADA Adenosine deaminas 27.1 57 0.0012 32.9 3.2 30 72-104 2-31 (325)
135 TIGR02631 xylA_Arthro xylose i 27.1 1.3E+02 0.0027 31.9 5.8 48 279-339 34-86 (382)
136 cd02071 MM_CoA_mut_B12_BD meth 27.1 1.2E+02 0.0027 26.2 4.9 42 85-126 34-77 (122)
137 PRK07379 coproporphyrinogen II 26.6 2.5E+02 0.0055 29.6 8.0 55 238-296 71-131 (400)
138 PF13380 CoA_binding_2: CoA bi 26.6 1.3E+02 0.0028 26.0 4.9 40 91-133 69-109 (116)
139 PRK13125 trpA tryptophan synth 26.2 3.4E+02 0.0073 26.5 8.3 53 252-304 88-143 (244)
140 PRK04147 N-acetylneuraminate l 26.2 3E+02 0.0064 27.6 8.1 82 265-369 72-156 (293)
141 PF06135 DUF965: Bacterial pro 26.2 87 0.0019 26.0 3.4 40 218-263 24-63 (79)
142 PRK08599 coproporphyrinogen II 25.9 2.6E+02 0.0056 29.0 7.9 41 254-296 70-116 (377)
143 cd04726 KGPDC_HPS 3-Keto-L-gul 25.7 2.4E+02 0.0052 26.1 6.9 43 256-298 42-85 (202)
144 PF09692 Arb1: Argonaute siRNA 25.6 31 0.00067 36.8 0.9 14 291-304 276-289 (396)
145 PRK05473 hypothetical protein; 25.6 94 0.002 26.2 3.5 40 218-263 27-66 (86)
146 COG2185 Sbm Methylmalonyl-CoA 25.1 1.6E+02 0.0035 27.1 5.3 46 86-131 48-95 (143)
147 PRK15447 putative protease; Pr 25.1 2.6E+02 0.0057 28.3 7.5 48 252-299 48-97 (301)
148 cd01306 PhnM PhnM is believed 25.0 7.7E+02 0.017 25.4 17.5 167 70-303 77-257 (325)
149 PF01208 URO-D: Uroporphyrinog 25.0 1.3E+02 0.0028 30.5 5.4 46 252-299 220-265 (343)
150 cd01298 ATZ_TRZ_like TRZ/ATZ f 24.9 1.5E+02 0.0033 30.3 5.9 62 72-136 56-146 (411)
151 cd00951 KDGDH 5-dehydro-4-deox 24.9 2.7E+02 0.0059 27.8 7.6 78 264-369 67-148 (289)
152 PRK03353 ribB 3,4-dihydroxy-2- 24.9 1.7E+02 0.0036 28.7 5.7 18 325-342 187-204 (217)
153 TIGR00433 bioB biotin syntheta 24.8 3.3E+02 0.0071 26.9 8.1 37 255-294 101-137 (296)
154 COG1082 IolE Sugar phosphate i 24.8 2E+02 0.0044 27.6 6.5 47 85-131 12-62 (274)
155 PLN02905 beta-amylase 24.6 1.7E+02 0.0037 33.1 6.4 56 281-348 290-350 (702)
156 PRK09314 bifunctional 3,4-dihy 24.5 1.6E+02 0.0035 30.8 5.9 58 268-342 128-193 (339)
157 PRK09057 coproporphyrinogen II 24.4 2.8E+02 0.0061 28.9 7.8 55 238-296 60-120 (380)
158 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.4 4.2E+02 0.0091 26.4 8.8 43 280-339 94-136 (275)
159 KOG2836 Protein tyrosine phosp 24.3 5.7E+02 0.012 23.6 9.0 58 101-163 16-74 (173)
160 PRK06552 keto-hydroxyglutarate 24.2 3.3E+02 0.0071 26.4 7.7 45 256-301 5-49 (213)
161 PF00290 Trp_syntA: Tryptophan 23.9 1.4E+02 0.0031 29.9 5.2 106 181-338 23-144 (259)
162 PRK06015 keto-hydroxyglutarate 23.9 96 0.0021 30.0 3.9 45 85-134 60-104 (201)
163 PRK13111 trpA tryptophan synth 23.5 1.5E+02 0.0032 29.7 5.3 47 87-134 103-149 (258)
164 TIGR00542 hxl6Piso_put hexulos 23.5 1.7E+02 0.0038 28.6 5.8 52 280-339 19-70 (279)
165 PRK02261 methylaspartate mutas 23.4 2.5E+02 0.0054 25.2 6.3 40 87-126 40-81 (137)
166 cd00717 URO-D Uroporphyrinogen 23.1 2.6E+02 0.0057 28.4 7.2 45 252-299 215-260 (335)
167 PF01726 LexA_DNA_bind: LexA D 23.1 1.5E+02 0.0032 23.3 4.1 43 187-229 15-57 (65)
168 KOG2422 Uncharacterized conser 23.0 39 0.00084 37.7 1.1 26 98-123 239-264 (665)
169 TIGR03551 F420_cofH 7,8-dideme 22.9 1.7E+02 0.0036 30.2 5.7 41 254-294 105-155 (343)
170 COG2406 Protein distantly rela 22.6 5.4E+02 0.012 24.0 8.1 22 243-264 94-115 (172)
171 TIGR01178 ade adenine deaminas 22.5 1.1E+02 0.0023 34.1 4.4 61 72-134 50-115 (552)
172 PRK08309 short chain dehydroge 22.4 49 0.0011 30.9 1.5 26 425-450 146-171 (177)
173 PF12065 DUF3545: Protein of u 22.2 23 0.00051 27.7 -0.5 13 10-22 16-28 (59)
174 PRK00748 1-(5-phosphoribosyl)- 22.1 3.5E+02 0.0076 25.7 7.5 49 88-136 30-83 (233)
175 TIGR00683 nanA N-acetylneurami 22.0 3.8E+02 0.0083 26.9 8.0 95 252-369 51-154 (290)
176 PTZ00170 D-ribulose-5-phosphat 22.0 4.3E+02 0.0093 25.6 8.1 39 256-295 54-93 (228)
177 TIGR03234 OH-pyruv-isom hydrox 21.6 2.4E+02 0.0051 27.2 6.2 44 87-131 13-56 (254)
178 PRK07143 hypothetical protein; 21.6 4.3E+02 0.0093 26.8 8.2 20 279-298 67-86 (279)
179 PF02836 Glyco_hydro_2_C: Glyc 21.6 5.1E+02 0.011 25.7 8.8 42 281-343 40-81 (298)
180 PRK08446 coproporphyrinogen II 21.5 3.3E+02 0.0071 28.1 7.5 55 238-296 56-114 (350)
181 TIGR00676 fadh2 5,10-methylene 21.5 8.1E+02 0.017 24.3 17.9 40 93-132 20-63 (272)
182 PLN02591 tryptophan synthase 21.5 1.5E+02 0.0033 29.5 4.8 46 87-133 92-137 (250)
183 TIGR02313 HpaI-NOT-DapA 2,4-di 21.3 4E+02 0.0086 26.8 7.9 50 252-301 50-106 (294)
184 PRK12485 bifunctional 3,4-dihy 21.3 2E+02 0.0043 30.4 5.9 58 268-342 129-194 (369)
185 cd05014 SIS_Kpsf KpsF-like pro 21.1 1.1E+02 0.0024 26.0 3.4 25 88-112 61-85 (128)
186 PF07905 PucR: Purine cataboli 21.1 2.2E+02 0.0048 24.7 5.4 43 89-131 60-103 (123)
187 CHL00200 trpA tryptophan synth 21.0 2E+02 0.0042 28.9 5.6 44 90-134 108-151 (263)
188 cd00530 PTE Phosphotriesterase 21.0 3.3E+02 0.0071 26.7 7.2 37 253-290 162-201 (293)
189 COG3473 Maleate cis-trans isom 21.0 6.3E+02 0.014 25.0 8.7 77 255-358 88-164 (238)
190 COG0329 DapA Dihydrodipicolina 21.0 2.9E+02 0.0063 28.0 6.9 63 262-337 68-133 (299)
191 PRK03620 5-dehydro-4-deoxygluc 21.0 4E+02 0.0087 26.9 7.9 89 252-368 57-154 (303)
192 PRK09249 coproporphyrinogen II 20.6 3.4E+02 0.0073 29.1 7.6 28 267-296 140-167 (453)
193 COG0800 Eda 2-keto-3-deoxy-6-p 20.5 1.4E+02 0.0031 29.2 4.2 46 84-134 68-113 (211)
194 PRK05799 coproporphyrinogen II 20.4 3.8E+02 0.0083 27.7 7.8 28 267-296 88-115 (374)
195 COG0735 Fur Fe2+/Zn2+ uptake r 20.2 6E+02 0.013 22.9 8.1 69 187-272 8-76 (145)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=3.5e-39 Score=317.68 Aligned_cols=249 Identities=37% Similarity=0.506 Sum_probs=227.1
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhcCCeEEeEEEEEeeeCCCCCCCCCC
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQSRGSESEE 150 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~-~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (453)
||++||||||++|||..+|.++++.|++.|++++|||||||+.|..++. .+....|+.+|||+|+++.|.+ .
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~~-------~ 73 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWGG-------H 73 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccCC-------e
Confidence 6899999999999999999999999999999999999999999999987 5555689999999999999875 5
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCcccc
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN 230 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~~~ 230 (453)
.+|+++|+++. ....+.+.+.+.+..|.+|++.+.+++...+++-.++.+...++.+ .+.|+|++..+++.+++.+
T Consensus 74 ~ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~ 149 (258)
T COG0613 74 IIHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNAST 149 (258)
T ss_pred EEEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccc
Confidence 89999999864 2356889999999999999999999999999999999988877654 4679999999999999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCh-HHHHHHHHHcCCcEEEEeCCCCChhhhhhh
Q 012942 231 LKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVDVNFL 309 (453)
Q Consensus 231 ~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GldGIEV~~~~~~~~~~~~~ 309 (453)
..++|++|+..++++|++..+.+.++.|..|+.+||++|+|||.++..+ ..++..+.+.|.||||+++..+.+.+..
T Consensus 150 ~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~-- 227 (258)
T COG0613 150 RQGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPRE-- 227 (258)
T ss_pred hHHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHH--
Confidence 9999999999999999999999999999999999999999999998764 6788889999999999999998887654
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012942 310 EKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 348 (453)
Q Consensus 310 ~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 348 (453)
.+..++++++++.|+|||||.++.
T Consensus 228 ---------------~~~~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 228 ---------------VLALLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred ---------------HHHHHHHHhhhhhcccccccCCCc
Confidence 677899999999999999998864
No 2
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.80 E-value=3.3e-20 Score=216.29 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=152.8
Q ss_pred CceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCC
Q 012942 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSES 148 (453)
Q Consensus 71 ~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~ 148 (453)
...++|||+||++| ||.++|++++++|+++|+++||||||+++.+++++.+++++.||++|+|+|+++.++
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~~------- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVDD------- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEecc-------
Confidence 66799999999999 999999999999999999999999999999999999999999999999999999753
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCcc
Q 012942 149 EEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHV 228 (453)
Q Consensus 149 ~~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~ 228 (453)
.+|+ +|+.+. ..|. +.+.++-.++..|++..++++.+++ .++++.|.+
T Consensus 404 --~~~i-v~~~~~-----~~L~------------~~~~VVfDLETTGL~~~~deIIEIg------------AV~V~~G~i 451 (1437)
T PRK00448 404 --GVPI-VYNEVD-----RDLK------------DATYVVFDVETTGLSAVYDEIIEIG------------AVKIKNGEI 451 (1437)
T ss_pred --ceeE-EecCCc-----hhhc------------cCcEEEEEhhhcCCCCchhhhheee------------eEEEeCCeE
Confidence 3455 587641 2222 1234556677778888888776653 123344444
Q ss_pred ccHHHHHHHHhhCCCCc-------------cccCCCCCHHHHHHHHHH-cCCEEEEeCCCCCCCh--HHHHH-----HHH
Q 012942 229 ENLKQAFARYLYDGGPA-------------YSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAIIR-----KLK 287 (453)
Q Consensus 229 ~~~~~aF~~yl~~g~p~-------------yv~~~~~~~eeaI~~I~~-aGGvaVLAHP~~~~~~--~~li~-----~l~ 287 (453)
. +.|..|+.++.+. ++. ..++++|+++.+++ +||.+++|||..++.. ...+. .+.
T Consensus 452 i---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~ 527 (1437)
T PRK00448 452 I---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIK 527 (1437)
T ss_pred e---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCcccc
Confidence 2 4566666655432 222 56899999999999 8999999999865431 11111 123
Q ss_pred HcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 288 DVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 288 ~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
..++|++|+++..++.... ..+..+|+.+|+..++
T Consensus 528 ~~~IDTLelar~l~p~~k~-----------------~kL~~LAk~lGL~~~~ 562 (1437)
T PRK00448 528 NPVIDTLELSRFLYPELKS-----------------HRLNTLAKKFGVELEH 562 (1437)
T ss_pred ccceeHHHHHHHHcCcccc-----------------ccHHHHHHHcCCCCCC
Confidence 4467888887765432221 1678899999998754
No 3
>PRK09248 putative hydrolase; Validated
Probab=99.79 E-value=1.7e-18 Score=168.98 Aligned_cols=182 Identities=21% Similarity=0.280 Sum_probs=118.2
Q ss_pred ceeEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCH------HHHHHHH-HhcCCeEEeEEEEEeeeC-
Q 012942 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGI------PEAIETA-RRFGMKIIPGVEISTIFC- 141 (453)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt-~~g~------~e~~~~a-~~~gi~vI~GiEis~~~~- 141 (453)
.|++|+|+||.+| ||..++++++++|.+.|++.|+||||+. ..+. ....+.. +..+|+++.|+|+.....
T Consensus 2 ~~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~~~ 81 (246)
T PRK09248 2 KYPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKNYD 81 (246)
T ss_pred ccceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccccCC
Confidence 3688999999999 8999999999999999999999999985 3332 1111211 236899999999986531
Q ss_pred CCCC--CCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHH
Q 012942 142 QSRG--SESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVA 219 (453)
Q Consensus 142 ~~~~--~~~~~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia 219 (453)
+..+ ......++++..++ |..
T Consensus 82 ~~~~~~~~~~~~~D~vi~sv---------------------------------------------------------H~~ 104 (246)
T PRK09248 82 GEIDLPGDMLKKLDIVIAGF---------------------------------------------------------HEP 104 (246)
T ss_pred CcccCCHhHhhhCCEEEEec---------------------------------------------------------ccC
Confidence 1000 00000111221111 000
Q ss_pred HHHHHcCccccHHHHHHHHhhCCCCccccCC-CCCHHHHHHHHHHcCCEEEEeCCCCCC---ChHHHHHHHHHcCCcEEE
Q 012942 220 RAMVEAGHVENLKQAFARYLYDGGPAYSTGS-EPLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 220 ~aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~-~~~~eeaI~~I~~aGGvaVLAHP~~~~---~~~~li~~l~~~GldGIE 295 (453)
. |.+.. ....++++++| ++|++.|||||+++. ....++..+++.|+ +||
T Consensus 105 ------~-------------------~~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lE 157 (246)
T PRK09248 105 ------V-------------------FAPGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALE 157 (246)
T ss_pred ------c-------------------cCCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEE
Confidence 0 00000 01256788888 899999999998754 23456778888888 999
Q ss_pred EeCCCCCh---hhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCCCCCCCCCCcccCC
Q 012942 296 VYRSDGKL---VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS 356 (453)
Q Consensus 296 V~~~~~~~---~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 356 (453)
+.++.... .... ....+.+++.++|+..|+|||+|.+. .+|.
T Consensus 158 vN~~~l~~~~~g~~~--------------~~~~~~~~~~~~g~~~~~gSDAH~~~-----~vg~ 202 (246)
T PRK09248 158 INNSSFGHSRKGSED--------------NCRAIAALCKKAGVWVALGSDAHIAF-----DIGN 202 (246)
T ss_pred EECCCCccCCCCCcC--------------hHHHHHHHHHHcCCeEEEeCCCCChh-----hhcc
Confidence 98764310 0000 11267789999999999999999973 5673
No 4
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.68 E-value=1.1e-15 Score=139.02 Aligned_cols=78 Identities=36% Similarity=0.666 Sum_probs=67.9
Q ss_pred EceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCCcE
Q 012942 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEEPV 152 (453)
Q Consensus 75 ~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~~v 152 (453)
|||||||.|| ||..+|++++++|++.|++.||||||+++.++.++.+.++..||++++|+|+..... ....
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~~-------~~~~ 73 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFER-------NDPF 73 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHHH-------TTTE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeeccccc-------cchh
Confidence 6999999999 999999999999999999999999999999999999999999999999999943222 2467
Q ss_pred EEEEEec
Q 012942 153 HILAYYS 159 (453)
Q Consensus 153 HILgYg~ 159 (453)
|++.+..
T Consensus 74 ~~~i~~~ 80 (175)
T PF02811_consen 74 DYIIGSV 80 (175)
T ss_dssp EEEEEEG
T ss_pred HHHHHHh
Confidence 8877765
No 5
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.66 E-value=9.8e-16 Score=157.95 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=121.1
Q ss_pred EceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhcCCe------EEeEEEEEeeeC
Q 012942 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (453)
Q Consensus 75 ~DLH~HT~~S---DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a----~~~gi~------vI~GiEis~~~~ 141 (453)
+|||+||.+| +..++|+.|+.+|...|++.|++|||++.. ..+.... ...|+. +++|+|+.+.
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~~-- 77 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDES-- 77 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeeccccccccC--
Confidence 6999999999 778999999999999999999999999994 3222222 345776 8888887653
Q ss_pred CCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHH
Q 012942 142 QSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 221 (453)
Q Consensus 142 ~~~~~~~~~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~a 221 (453)
+++|+|+|+.+. +...++- +.|.+ . + ...+||
T Consensus 78 --------~~VH~L~~fp~l-----~~a~~f~---------------~~l~~-~--l------------~~~~rp----- 109 (374)
T TIGR00375 78 --------GPIHVLLFMPTL-----ADMKQFS---------------NWLSA-R--L------------KNIGRS----- 109 (374)
T ss_pred --------CCceEEEECCCH-----HHHHHHH---------------HHHHh-h--C------------CCCCCC-----
Confidence 589999999752 2222211 11110 0 0 011222
Q ss_pred HHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHH----HHcC--CcEEE
Q 012942 222 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVG--LHGLE 295 (453)
Q Consensus 222 Lv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l----~~~G--ldGIE 295 (453)
. ...++..+.++.+++.||++|.||+|+.... ++..+ ...| -|+||
T Consensus 110 -----------------------~---q~~~~~~~~~~~v~~~gGi~iPAHiftP~~S--l~g~~~~~~~~~g~~p~avE 161 (374)
T TIGR00375 110 -----------------------S---QRIYETGLNLEKVQDYGGLFGPAHIFTPWTS--LYKSGDSSSDCYVFDPDFVE 161 (374)
T ss_pred -----------------------C---eeeecHHHHHHHhhcCCeEEEeCCCCCCccc--ccccccchhhhhcCCCceEE
Confidence 0 0114778899999999999999999974321 11110 0112 29999
Q ss_pred EeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCCCCCCCCCCcccCC
Q 012942 296 VYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS 356 (453)
Q Consensus 296 V~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 356 (453)
+..+..+. +...++...++....+||+|.+. |..+|+
T Consensus 162 lglS~d~~---------------------ma~~~s~L~~~~~ISnSDAHsl~---p~~IGr 198 (374)
T TIGR00375 162 LGLSADTD---------------------MADHISELNDYPFLTNSDAHSLG---PHRLGR 198 (374)
T ss_pred EeccCCHH---------------------HHHHhHHhcCCCeEeecCCCCCC---hhHhCC
Confidence 99986431 34578888999999999999974 235775
No 6
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.65 E-value=3.6e-16 Score=123.08 Aligned_cols=64 Identities=44% Similarity=0.704 Sum_probs=61.9
Q ss_pred ceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEee
Q 012942 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 139 (453)
Q Consensus 76 DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~ 139 (453)
|||+||.|| ||..+|++++++|+++|++.++||||+++.|+.++++.+++.||++|||+|+++.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 799999999 9999999999999999999999999999999999999999999999999999863
No 7
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.63 E-value=7.4e-15 Score=168.49 Aligned_cols=118 Identities=33% Similarity=0.447 Sum_probs=97.5
Q ss_pred eeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCC
Q 012942 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEE 150 (453)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (453)
.++||||||.|| ||..+|++++++|++.|++++||||||++.|+.+++++|++.||++|+|+|+++.+.. ...
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~-----~~~ 78 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP-----DPG 78 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC-----CCC
Confidence 478999999999 9999999999999999999999999999999999999999999999999999986521 123
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 208 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag 208 (453)
.+|+++|..+ ..++.+|.++.+..+..+. ..+.+++++++.++..
T Consensus 79 ~~hllllAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~p~i~~e~L~~~~~ 123 (1046)
T PRK05672 79 GPHLLVLARD--REGYGRLSRLITRARLRAG-----------KGEYRLDLDDLAEPAG 123 (1046)
T ss_pred CceEEEEEcC--hHHHHHHHHHHHHHHHhCC-----------CCCccccHHHHHhhcC
Confidence 6799999975 4577888777665543221 3456788888877653
No 8
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.60 E-value=2.4e-14 Score=161.76 Aligned_cols=102 Identities=29% Similarity=0.371 Sum_probs=84.0
Q ss_pred ceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCC
Q 012942 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESE 149 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~ 149 (453)
|.++|||+||.|| ||..+|++++++|++.|+++|||||||++.|..+++++|++.||++|+|+|+++.++........
T Consensus 1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~ 80 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRR 80 (874)
T ss_pred CCccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCccccccc
Confidence 3478999999999 99999999999999999999999999999999999999999999999999999864321100112
Q ss_pred CcEEEEEEeccCCCCchHHHHHHHHH
Q 012942 150 EPVHILAYYSSCGPSKYEELENFLAN 175 (453)
Q Consensus 150 ~~vHILgYg~d~~~~~~~~L~~~L~~ 175 (453)
...|++.|..+ ..+|.+|.++.+.
T Consensus 81 ~~~~lvLLAkN--~~GY~NL~kL~S~ 104 (874)
T PRK09532 81 RKYHQVVLAKN--TQGYKNLVKLTTI 104 (874)
T ss_pred ccceeEEEecC--HHHHHHHHHHHhH
Confidence 24688888764 4578888776553
No 9
>PRK08392 hypothetical protein; Provisional
Probab=99.60 E-value=2.7e-14 Score=137.14 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=54.2
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CH----HHHHHHHHhcCCeEEeEEEEEeee
Q 012942 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GI----PEAIETARRFGMKIIPGVEISTIF 140 (453)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~---g~----~e~~~~a~~~gi~vI~GiEis~~~ 140 (453)
+|+|+||.+|||..++++++++|.++|++.++||||.... .+ .++.++.++.+|.+++|+|+....
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~ 73 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP 73 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC
Confidence 5999999999999999999999999999999999998653 22 223333344689999999998753
No 10
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.53 E-value=2.1e-13 Score=135.15 Aligned_cols=68 Identities=24% Similarity=0.387 Sum_probs=53.8
Q ss_pred ceeEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------HHHHH----HHHHh-cCCe
Q 012942 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPEAI----ETARR-FGMK 129 (453)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt~~---------g-------~~e~~----~~a~~-~gi~ 129 (453)
||++|+|+||.+| ||..++++++++|.++|++.++||||.... . +.+.. ++.++ .+|+
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~ 80 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY 80 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe
Confidence 5789999999999 999999999999999999999999996641 0 12211 12223 3799
Q ss_pred EEeEEEEEee
Q 012942 130 IIPGVEISTI 139 (453)
Q Consensus 130 vI~GiEis~~ 139 (453)
|+.|+|+...
T Consensus 81 Il~GiE~~~~ 90 (269)
T PRK07328 81 VRLGIEADYH 90 (269)
T ss_pred EEEEEEeccc
Confidence 9999999864
No 11
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.49 E-value=5.4e-14 Score=159.58 Aligned_cols=91 Identities=25% Similarity=0.394 Sum_probs=81.7
Q ss_pred eEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCCc
Q 012942 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEEP 151 (453)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~~ 151 (453)
++||||||.|| ||..+|+++++.|++.|+++|||||||++.|+.+++++|++.||++|+|+|+++.+ ..
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~---------~~ 73 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN---------FR 73 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC---------cE
Confidence 78999999999 99999999999999999999999999999999999999999999999999998752 36
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHH
Q 012942 152 VHILAYYSSCGPSKYEELENFLANIR 177 (453)
Q Consensus 152 vHILgYg~d~~~~~~~~L~~~L~~ir 177 (453)
+|+|+.. ..+|.+|.++.+...
T Consensus 74 l~LLAkn----~~GY~nL~kL~S~~~ 95 (973)
T PRK07135 74 FILLAKN----YSGYKLLNELSSKKS 95 (973)
T ss_pred EEEEECC----HHHHHHHHHHHHHHh
Confidence 7777774 458999999877543
No 12
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.47 E-value=1.2e-12 Score=151.51 Aligned_cols=101 Identities=28% Similarity=0.336 Sum_probs=84.1
Q ss_pred eEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCC-CCCCC
Q 012942 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRG-SESEE 150 (453)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~-~~~~~ 150 (453)
+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+++.++.... .....
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 57999999999 9999999999999999999999999999999999999999999999999999997642111 01122
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHH
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANI 176 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~i 176 (453)
..|++.|..+ ..+|.+|.++.+..
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~S~~ 105 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLSSRA 105 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHHHHH
Confidence 4599988864 56788888776543
No 13
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.8e-12 Score=147.47 Aligned_cols=101 Identities=29% Similarity=0.385 Sum_probs=83.8
Q ss_pred eEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCC-C---C
Q 012942 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRG-S---E 147 (453)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~-~---~ 147 (453)
+++||+||.|| ||..+|++++++|+++|++++|||||+++.|+.+++++|++.||++|+|+|+++.+++..+ . .
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 9999999999999999999999999999999999999999999999999999987542100 0 0
Q ss_pred CCCcEEEEEEeccCCCCchHHHHHHHHHH
Q 012942 148 SEEPVHILAYYSSCGPSKYEELENFLANI 176 (453)
Q Consensus 148 ~~~~vHILgYg~d~~~~~~~~L~~~L~~i 176 (453)
.....|++.|..+ ..+|.+|.++.+..
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~a 107 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSLA 107 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHHH
Confidence 1123589988864 56788888876644
No 14
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.44 E-value=1.4e-12 Score=127.04 Aligned_cols=64 Identities=28% Similarity=0.439 Sum_probs=50.9
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-HHHHHHHHhcCCeEEeEEEEEe
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI-PEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~-~e~~~~a~~~gi~vI~GiEis~ 138 (453)
||++|+|+||. +||..+++++++.|.+.|++.||||||...... ....+ .-.+|.++.|+|+..
T Consensus 1 ~m~~DlHvHt~-~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~--~~~~i~Il~GiEi~~ 65 (237)
T PRK00912 1 MKFYDLNVHAV-PDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELE--DLLGFEIFRGVEIVA 65 (237)
T ss_pred CCceEeccCCC-CCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHH--HhcCCcEEeeEEEec
Confidence 56789999994 799999999999999999999999999875321 11111 112899999999964
No 15
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.44 E-value=3.6e-12 Score=147.52 Aligned_cols=103 Identities=26% Similarity=0.419 Sum_probs=85.1
Q ss_pred ceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCC--
Q 012942 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSE-- 147 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~-- 147 (453)
++++|||+||.|| ||..+|++++++|++.|+++||||||+++.|+.++++.|++.||++|+|+|+.+.........
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~ 82 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPD 82 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccccc
Confidence 4589999999999 999999999999999999999999999999999999999999999999999998653210000
Q ss_pred -CCCcEEEEEEeccCCCCchHHHHHHHHHH
Q 012942 148 -SEEPVHILAYYSSCGPSKYEELENFLANI 176 (453)
Q Consensus 148 -~~~~vHILgYg~d~~~~~~~~L~~~L~~i 176 (453)
.....|++.|..+ ..+|.+|.++.+..
T Consensus 83 ~~~~~~~l~lLAkn--~~Gy~nL~kL~S~a 110 (1151)
T PRK06826 83 IDNETYHLVLLAKN--ETGYKNLMKIVSKA 110 (1151)
T ss_pred ccCCCceEEEEEcC--cHHHHHHHHHHHHH
Confidence 0123599988864 56888888776543
No 16
>PRK06361 hypothetical protein; Provisional
Probab=99.43 E-value=4e-12 Score=121.28 Aligned_cols=61 Identities=41% Similarity=0.709 Sum_probs=50.4
Q ss_pred eeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHH--------HHHhcCCeEEeEEEEEee
Q 012942 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE--------TARRFGMKIIPGVEISTI 139 (453)
Q Consensus 79 ~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~--------~a~~~gi~vI~GiEis~~ 139 (453)
+||.||||..+|++++++|.+.|++.||||||+...+...... +.+..+|.+++|+|++..
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~ 69 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV 69 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc
Confidence 6999999999999999999999999999999998765433221 222358999999999853
No 17
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=99.41 E-value=5.4e-12 Score=124.03 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=51.2
Q ss_pred EceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------HH----HHHHHHHh--cCCeEEe
Q 012942 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IP----EAIETARR--FGMKIIP 132 (453)
Q Consensus 75 ~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt~~-----g----------~~----e~~~~a~~--~gi~vI~ 132 (453)
.|+|+||.+| ||..++++++++|.++|++.|+||||.... . ++ ++.++.++ .+|.|+.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4899999999 999999999999999999999999997631 0 11 12222233 3799999
Q ss_pred EEEEEee
Q 012942 133 GVEISTI 139 (453)
Q Consensus 133 GiEis~~ 139 (453)
|+|+...
T Consensus 81 GiE~~~~ 87 (253)
T TIGR01856 81 GLEVDYI 87 (253)
T ss_pred EEEeccc
Confidence 9999864
No 18
>PRK08123 histidinol-phosphatase; Reviewed
Probab=99.41 E-value=9.4e-12 Score=123.54 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=52.4
Q ss_pred ceeEceeeeCcCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------HH----HHHHHHHh--c
Q 012942 72 NVVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IP----EAIETARR--F 126 (453)
Q Consensus 72 ~~~~DLH~HT~~S-DG~-~tp~elv~~A~~~Gl~~IAITDHdt~~g-----------------~~----e~~~~a~~--~ 126 (453)
||++|+|+||.+| ||. .++++++++|.++|++.|+||||..... +. ++.++.++ .
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~ 80 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAG 80 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccC
Confidence 4678999999999 775 6899999999999999999999965421 11 12222233 2
Q ss_pred CCeEEeEEEEEee
Q 012942 127 GMKIIPGVEISTI 139 (453)
Q Consensus 127 gi~vI~GiEis~~ 139 (453)
+|.++.|+|+...
T Consensus 81 ~i~i~~GiE~~~~ 93 (270)
T PRK08123 81 QIDIRIGLEVDYI 93 (270)
T ss_pred CCeEEEEEEeecc
Confidence 6999999999864
No 19
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.38 E-value=2.2e-12 Score=147.30 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=84.8
Q ss_pred eeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCC
Q 012942 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEE 150 (453)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (453)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+.+.+ .
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~-------~ 73 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFVEE-------Q 73 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEecCC-------C
Confidence 688999999999 9999999999999999999999999999999999999999999999999999986432 2
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHH
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANI 176 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~i 176 (453)
..|++.+..+ ..+|.+|.++.+..
T Consensus 74 ~~~lvlLAkN--~~GY~nL~kL~s~~ 97 (1034)
T PRK07279 74 EVTLRLIAKN--TQGYKNLLKISTAK 97 (1034)
T ss_pred cceEEEEECC--HHHHHHHHHHHHHh
Confidence 4699999874 56888888887643
No 20
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.37 E-value=6.3e-12 Score=144.28 Aligned_cols=118 Identities=27% Similarity=0.312 Sum_probs=95.8
Q ss_pred ceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCC
Q 012942 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESE 149 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~ 149 (453)
+.++.|||||.|| ||..+++++++.|++.|+.+||||||+++.|..+|+.+|++.||++|.|+|+........ ...
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~--~~~ 79 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF--RGR 79 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc--ccc
Confidence 5689999999999 999999999999999999999999999999999999999999999999999888754210 112
Q ss_pred CcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHH
Q 012942 150 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVA 204 (453)
Q Consensus 150 ~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~ 204 (453)
...|++.|..+ +.+|.+|..+++.....- ......++++++.
T Consensus 80 ~~~~l~llAkn--~~GY~nL~~LsS~a~~~g-----------~~~~~~i~~~~l~ 121 (1139)
T COG0587 80 ERPHLLLLAKN--NEGYKNLVKLSSIAYLEG-----------EKGKPRIDKDLLE 121 (1139)
T ss_pred CCccEEEEeCC--HHHHHHHHHHHHHHHhcC-----------CCCCcccCHHHHh
Confidence 46899999875 568999988876554321 1223456777765
No 21
>PRK07945 hypothetical protein; Provisional
Probab=99.37 E-value=3.4e-12 Score=130.68 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=55.3
Q ss_pred CceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHH-------HHHHHHh-cCCeEEeEEEE
Q 012942 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPE-------AIETARR-FGMKIIPGVEI 136 (453)
Q Consensus 71 ~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~----g--~~e-------~~~~a~~-~gi~vI~GiEi 136 (453)
.++++|+|+||.||||..++++++++|.++|++.|+||||.... + ... +.++.++ .+|.++.|+|+
T Consensus 94 ~~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~ 173 (335)
T PRK07945 94 AALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEV 173 (335)
T ss_pred HHHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEe
Confidence 37899999999999999999999999999999999999996542 1 111 1122222 36999999999
Q ss_pred Eeee
Q 012942 137 STIF 140 (453)
Q Consensus 137 s~~~ 140 (453)
....
T Consensus 174 d~~~ 177 (335)
T PRK07945 174 DILD 177 (335)
T ss_pred cccC
Confidence 8753
No 22
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.37 E-value=7.8e-12 Score=122.20 Aligned_cols=69 Identities=32% Similarity=0.514 Sum_probs=56.4
Q ss_pred eeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC---CCH--------HHHHHHHHhcCCeEEeEEEEEeeeC
Q 012942 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM---SGI--------PEAIETARRFGMKIIPGVEISTIFC 141 (453)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~---~g~--------~e~~~~a~~~gi~vI~GiEis~~~~ 141 (453)
+++|+|+||.||||..+|.+++++|.+.|+..+|||||--. ... .++..+.+...|.++.|+|++....
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~ 80 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD 80 (237)
T ss_pred CCcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCC
Confidence 46899999999999999999999999999999999999665 211 2233344456799999999998653
No 23
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.35 E-value=2.7e-12 Score=145.25 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=85.3
Q ss_pred eeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCC
Q 012942 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEE 150 (453)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (453)
|++.|||||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+.. .
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~---------~ 71 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS---------T 71 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC---------C
Confidence 678999999999 99999999999999999999999999999999999999999999999999999842 2
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHHHH
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANIRD 178 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~ir~ 178 (453)
..|++.|..+ ..+|.+|.++.+....
T Consensus 72 ~~~lvLLAkn--~~GY~nL~kLsS~~~~ 97 (971)
T PRK05898 72 NATLVLYAKN--YNGYLNLIKISSFIMT 97 (971)
T ss_pred CceEEEEeCC--HHHHHHHHHHHHHHHh
Confidence 4688888764 5689999998876553
No 24
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.34 E-value=2.4e-12 Score=149.48 Aligned_cols=74 Identities=34% Similarity=0.458 Sum_probs=69.6
Q ss_pred CCCceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCC
Q 012942 69 VDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQ 142 (453)
Q Consensus 69 ~~~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~ 142 (453)
....+++|||+||.+| ||.++|++++++|+++|+++||||||+++.+++++.+++++.||++|+|+|+++.++.
T Consensus 99 ~~~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d~ 174 (1213)
T TIGR01405 99 NAKEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDDR 174 (1213)
T ss_pred CCccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeeccc
Confidence 4567899999999999 9999999999999999999999999999999999999999999999999999987553
No 25
>PRK08609 hypothetical protein; Provisional
Probab=99.34 E-value=2.2e-11 Score=132.77 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=55.2
Q ss_pred CCceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHH-------HHHHHHh-cCCeEEeEEE
Q 012942 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPE-------AIETARR-FGMKIIPGVE 135 (453)
Q Consensus 70 ~~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~----g--~~e-------~~~~a~~-~gi~vI~GiE 135 (453)
..-+++|+||||.+|||..++++++++|.+.|++.|+||||.... + ..+ +.++.++ .+|.++.|+|
T Consensus 331 ~~d~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiE 410 (570)
T PRK08609 331 LSDIQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIE 410 (570)
T ss_pred hHhhcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 335788999999999999999999999999999999999997421 1 111 1222222 3799999999
Q ss_pred EEeee
Q 012942 136 ISTIF 140 (453)
Q Consensus 136 is~~~ 140 (453)
+....
T Consensus 411 v~i~~ 415 (570)
T PRK08609 411 MDILP 415 (570)
T ss_pred EeecC
Confidence 99754
No 26
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.34 E-value=1.8e-11 Score=141.13 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=93.9
Q ss_pred eeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCCCCCC
Q 012942 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGSESEE 150 (453)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (453)
.++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+..... ..
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~~-----~~ 76 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEEE-----EK 76 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCCC-----CC
Confidence 478999999999 99999999999999999999999999999999999999999999999999999854210 12
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 012942 151 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 209 (453)
Q Consensus 151 ~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~ 209 (453)
..|++.|..+ ..+|.+|.++.+..... . .-.++++.+.++..+
T Consensus 77 ~~~l~LLAkn--~~Gy~nL~kL~S~~~~~-------------~-~p~i~~~~L~~~~~g 119 (1107)
T PRK06920 77 SYPLVLLAEN--EIGYQNLLKISSSIMTK-------------S-KEGIPKKWLAHYAKG 119 (1107)
T ss_pred cccEEEEeCC--HHHHHHHHHHHHHHHhc-------------C-CCCCCHHHHHhhCCC
Confidence 3589888864 56888888877654321 1 234677777666543
No 27
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.34 E-value=3.9e-12 Score=147.29 Aligned_cols=103 Identities=30% Similarity=0.421 Sum_probs=85.5
Q ss_pred eeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCCCCCC--CC
Q 012942 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQSRGS--ES 148 (453)
Q Consensus 73 ~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~~~~~--~~ 148 (453)
.+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+.+..+...+. ..
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 478999999999 99999999999999999999999999999999999999999999999999999864321000 01
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHHHHH
Q 012942 149 EEPVHILAYYSSCGPSKYEELENFLANIR 177 (453)
Q Consensus 149 ~~~vHILgYg~d~~~~~~~~L~~~L~~ir 177 (453)
....|++.+..+ ..+|.+|.++.+...
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S~a~ 108 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTTISH 108 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHHHHH
Confidence 123589988864 568999988876543
No 28
>PRK05588 histidinol-phosphatase; Provisional
Probab=99.25 E-value=5.1e-11 Score=117.08 Aligned_cols=65 Identities=20% Similarity=0.481 Sum_probs=50.6
Q ss_pred eEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------CHHHHHHHHHhc-CCeEEeEEEEEee
Q 012942 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARRF-GMKIIPGVEISTI 139 (453)
Q Consensus 74 ~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt~~---------g~~e~~~~a~~~-gi~vI~GiEis~~ 139 (453)
++|+|+||.+| ||..++++++++|.++|++.+ ||||.... .++...+...++ +++++.|+|+...
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~ 76 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGME 76 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEeccc
Confidence 47999999999 999999999999999999988 99996331 122333333333 5899999999653
No 29
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=99.08 E-value=8.2e-10 Score=110.45 Aligned_cols=200 Identities=22% Similarity=0.245 Sum_probs=129.2
Q ss_pred ceeEceeeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhc--------CCeEEeEEEEEeee
Q 012942 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF--------GMKIIPGVEISTIF 140 (453)
Q Consensus 72 ~~~~DLH~HT~~S---DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~--------gi~vI~GiEis~~~ 140 (453)
.+.+|||+||.|| ...+..+.+++.|+..|++.|+.-|--......+..+..... ++.+|+-+|+...
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evEd~- 80 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVEDS- 80 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeeccC-
Confidence 4568999999999 678999999999999999999999977766666666654431 2446666666543
Q ss_pred CCCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHH
Q 012942 141 CQSRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVAR 220 (453)
Q Consensus 141 ~~~~~~~~~~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~ 220 (453)
..||+|.+.+.. +...+|.+.|+. +..+-...||||+
T Consensus 81 ---------~rVHhLlilPSl--~~~~El~~~l~~------------------------------~skni~~~grprv-- 117 (403)
T COG1379 81 ---------RRVHHLLILPSL--SAAEELSEWLSK------------------------------YSKNIETEGRPRV-- 117 (403)
T ss_pred ---------CceeEEEEcCcH--HHHHHHHHHHHH------------------------------hhcCccccCCcee--
Confidence 489999998642 112222222211 1111113455543
Q ss_pred HHHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCC-----CChHHHHHHHHHcCCcEEE
Q 012942 221 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL-----KNPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 221 aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~-----~~~~~li~~l~~~GldGIE 295 (453)
.++-.+..+.++..||+...||-|.. +..+.+-+-+-.+-+|.||
T Consensus 118 ------------------------------~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvE 167 (403)
T COG1379 118 ------------------------------YLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVE 167 (403)
T ss_pred ------------------------------eccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHH
Confidence 35788999999999999999997642 2222222222222356666
Q ss_pred EeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCCCCCCCCCCcccCC----ccCChhHHHHHhc
Q 012942 296 VYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS----VKLPVLVLNDFLK 369 (453)
Q Consensus 296 V~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~----~~~p~~~~~~~~~ 369 (453)
.==+- |.+ +.....+-+.+.....||.|.|. +..||+ +.+++..++.|.+
T Consensus 168 LGLSA----Dtd-----------------mAD~I~el~~~pFLtNSDAHSp~---phrLgREfn~f~v~~~sF~~~r~ 221 (403)
T COG1379 168 LGLSA----DTD-----------------MADMIEELHRLPFLTNSDAHSPY---PHRLGREFNQFEVEEISFEELRK 221 (403)
T ss_pred hcccc----Cch-----------------HHHHHHHhccCCcccccccCCCc---hhhhhhhhheeecccCCHHHHHH
Confidence 53321 111 44556667789999999999974 245664 4567777777665
No 30
>PRK07329 hypothetical protein; Provisional
Probab=99.01 E-value=2e-09 Score=105.57 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=47.0
Q ss_pred eEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC-----------CCHHH----HHHHHHhcCCeEEeEEEEE
Q 012942 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM-----------SGIPE----AIETARRFGMKIIPGVEIS 137 (453)
Q Consensus 74 ~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt~-----------~g~~e----~~~~a~~~gi~vI~GiEis 137 (453)
++|+|+||.|| ||..++++++++|. +.|+||||..+ ..+++ +.++.++++.+|+.|+|+.
T Consensus 1 ~~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~ 76 (246)
T PRK07329 1 IRDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG 76 (246)
T ss_pred CcccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeC
Confidence 36999999999 99999999999995 79999999543 12222 2223344567899999997
Q ss_pred ee
Q 012942 138 TI 139 (453)
Q Consensus 138 ~~ 139 (453)
..
T Consensus 77 ~~ 78 (246)
T PRK07329 77 YF 78 (246)
T ss_pred cc
Confidence 64
No 31
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=99.01 E-value=5.9e-10 Score=125.76 Aligned_cols=74 Identities=34% Similarity=0.505 Sum_probs=69.9
Q ss_pred CCCceeEceeeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEEEeeeCC
Q 012942 69 VDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQ 142 (453)
Q Consensus 69 ~~~~~~~DLH~HT~~S--DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEis~~~~~ 142 (453)
.....+++||.||.+| ||..++++++++|+++|.++||||||+.+..++++++++++.||++|.|+|....++.
T Consensus 331 ~~~eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD~ 406 (1444)
T COG2176 331 LAKEKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDDG 406 (1444)
T ss_pred cCccceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccCC
Confidence 3557899999999999 9999999999999999999999999999999999999999999999999999987654
No 32
>PRK06740 histidinol-phosphatase; Validated
Probab=98.83 E-value=4.8e-08 Score=100.13 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHD 111 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHd 111 (453)
||..+++++|++|.++|++.++||||-
T Consensus 58 ~~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 58 YTTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred CccchHHHHHHHHHHCCCcEEEECCCC
Confidence 788999999999999999999999995
No 33
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=4.4e-06 Score=80.15 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=49.9
Q ss_pred eEceeeeCcCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCCCH---HH-HHH-------HHH--hcCCeEEeEEE
Q 012942 74 VFELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMSGI---PE-AIE-------TAR--RFGMKIIPGVE 135 (453)
Q Consensus 74 ~~DLH~HT~~S--DG~~tp~e---lv~~A~~~Gl~~IAITDHdt~~g~---~e-~~~-------~a~--~~gi~vI~GiE 135 (453)
++|+|||-.+. ||..+.++ |++.|.++|+..|..|-|..-.-+ .+ ..+ ..+ ..++.++||.|
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCce
Confidence 58999999987 99999986 578889999999999999653321 11 111 112 25899999999
Q ss_pred EEee
Q 012942 136 ISTI 139 (453)
Q Consensus 136 is~~ 139 (453)
|...
T Consensus 81 IrIt 84 (254)
T COG4464 81 IRIT 84 (254)
T ss_pred EEEc
Confidence 9875
No 34
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=96.94 E-value=0.00059 Score=52.17 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCeeeeccCCCCCCCCCCcccCCc
Q 012942 325 TYTDLADTYGLLKLGGSDYHGRGGHGESELGSV 357 (453)
Q Consensus 325 ~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~ 357 (453)
+..++|+++++++++|||+|.+ .++|..
T Consensus 6 ~A~~~A~~~~lp~~~gSDAH~~-----~~vG~~ 33 (56)
T PF13263_consen 6 RAAELAEKYGLPFTGGSDAHFL-----EEVGRG 33 (56)
T ss_dssp HHHHHHHHTT--EEEE--BSSG-----GGTTTT
T ss_pred HHHHHHHHcCCCeEeEEcccCh-----hhcCCE
Confidence 6789999999999999999976 468865
No 35
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=88.67 E-value=0.82 Score=43.80 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=42.5
Q ss_pred eEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEE
Q 012942 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEi 136 (453)
++|.|||-..+.-..+++++++.+.+.|++.+.+.-.+ ..++..+.+.+++.+ ++++++=+
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~Gi 61 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGV 61 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEe
Confidence 47999997644322379999999999999988754323 244566667777777 77665433
No 36
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=88.65 E-value=0.37 Score=53.13 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=37.9
Q ss_pred CceeEceeeeCcCC-CC-----CCCHHHHHHHHH--------------HcCCcEEEEecCCCCCCHHH
Q 012942 71 NNVVFELHSHSNFS-DG-----YLSPSKLVERAH--------------CNGVKVLALTDHDTMSGIPE 118 (453)
Q Consensus 71 ~~~~~DLH~HT~~S-DG-----~~tp~elv~~A~--------------~~Gl~~IAITDHdt~~g~~e 118 (453)
..+..|||+||.|| |. ..+|++--+-|+ .+=||++|||||--.-|...
T Consensus 5 ~~yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~~ 72 (592)
T PF12228_consen 5 QPYFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEVR 72 (592)
T ss_pred cccccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhHH
Confidence 46889999999999 53 678988777665 34578999999987777643
No 37
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=88.42 E-value=1.1 Score=44.88 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=44.6
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~g 127 (453)
++++|.|||-++..=....++++++|.+.|+..+.++= .+......+.++++++.
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~ 55 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYP 55 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCC
Confidence 57899999999876666889999999999998887765 34555667788888876
No 38
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=86.96 E-value=18 Score=33.90 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChh---hhhhhhhhhhHHHHHhHHHHHHHHH
Q 012942 253 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV---DVNFLEKIDNFLLLLCLRQITYTDL 329 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~---~~~~~~~~~n~~~l~~~~~~~~~~l 329 (453)
.++++++.... |+..++.|.+.. ....++.+.+.|+ .+++........ ... . .-...
T Consensus 162 ~~~~~~~~~~~-~~~~~~~H~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~---------------~-~~~~~ 221 (275)
T cd01292 162 ALEDLVALLRL-GGRVVIGHVSHL--DPELLELLKEAGV-SLEVCPLSNYLLGRDGEG---------------A-EALRR 221 (275)
T ss_pred CHHHHHHHHhc-CCCEEEECCccC--CHHHHHHHHHcCC-eEEECCcccccccCCcCC---------------c-ccHHH
Confidence 35667766554 788999999765 3456667777664 355543321110 000 0 11223
Q ss_pred HHHcCCeeeeccCCCCC
Q 012942 330 ADTYGLLKLGGSDYHGR 346 (453)
Q Consensus 330 A~~~gLl~tgGSDfHg~ 346 (453)
+.+.|..++-|||+...
T Consensus 222 ~~~~g~~~~lgTD~~~~ 238 (275)
T cd01292 222 LLELGIRVTLGTDGPPH 238 (275)
T ss_pred HHHCCCcEEEecCCCCC
Confidence 45668999999998654
No 39
>PRK10812 putative DNAse; Provisional
Probab=83.09 E-value=2.5 Score=42.20 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=38.4
Q ss_pred ceeEceeeeCc---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 012942 72 NVVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (453)
Q Consensus 72 ~~~~DLH~HT~---~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~g 127 (453)
|+++|.|||-. +++=...+++++++|.+.|+..+.++=- +.....++.++++++.
T Consensus 1 ~~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 1 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERD 58 (265)
T ss_pred CceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCC
Confidence 35789999976 3322347899999999999987755432 3445566677777653
No 40
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=80.79 E-value=5.2 Score=40.41 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHcC-CEEEEeCCCC------C-CChHHHHHHHHHcCCcEEEEeCC-CCChhhhhhhhhhhhHHHHHh
Q 012942 250 SEPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVYRS-DGKLVDVNFLEKIDNFLLLLC 320 (453)
Q Consensus 250 ~~~~~eeaI~~I~~aG-GvaVLAHP~~------~-~~~~~li~~l~~~GldGIEV~~~-~~~~~~~~~~~~~~n~~~l~~ 320 (453)
....++|+|+..++-| ||.++.|=-. + ...++.++.+.+.|+.||=+=.= .++.+-+++.
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y----------- 139 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWY----------- 139 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHH-----------
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHH-----------
Confidence 3578999999999999 8888888644 2 12367888899999999999543 3444433321
Q ss_pred HHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012942 321 LRQITYTDLADTYGLLKLGGSDYHGRGG 348 (453)
Q Consensus 321 ~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 348 (453)
..+.+-|.+|+|++ ||||+.+
T Consensus 140 ---~~i~~~AA~~~Lmv----nfHg~~k 160 (273)
T PF10566_consen 140 ---EDILEDAAEYKLMV----NFHGATK 160 (273)
T ss_dssp ---HHHHHHHHHTT-EE----EETTS--
T ss_pred ---HHHHHHHHHcCcEE----EecCCcC
Confidence 15667799999998 7999864
No 41
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=78.99 E-value=3.5 Score=40.49 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=42.0
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEEE
Q 012942 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiEi 136 (453)
+|.|||-...+-.....++++.|.+.|+..++++-.+. .......+.+.+.+..+++++=|
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~Gi 61 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGI 61 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE--
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecC
Confidence 69999998853345688888999999999997665444 34556666677777666665443
No 42
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.61 E-value=5.2 Score=39.29 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=45.9
Q ss_pred EceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHHhcCCeEEe
Q 012942 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIP 132 (453)
Q Consensus 75 ~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITD--Hdt~~g~~e~~~~a~~~gi~vI~ 132 (453)
+-+|+++.+|+-...|+++++.+.+.|.+.+.|=| .++..-..++.+.+++.|+.+++
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 34689999998778999999999999999999944 22234456677888899988755
No 43
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=77.32 E-value=4.9 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=38.8
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~g 127 (453)
|-++|.|||-+++.=....++++++|++.|+..+.++=- +......+.++++.+.
T Consensus 3 ~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 57 (258)
T PRK11449 3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQ 57 (258)
T ss_pred ceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCC
Confidence 346899999876532337889999999999988866432 3445566677776653
No 44
>PRK10425 DNase TatD; Provisional
Probab=75.84 E-value=5.5 Score=39.59 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.6
Q ss_pred eEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcC
Q 012942 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (453)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~g 127 (453)
++|.|||-.+..-....++++++|++.|+..+.++--+ ...+.++.+.++.+.
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~ 53 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYP 53 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 47999997644333578899999999998777665433 445666777777653
No 45
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=73.70 E-value=8.1 Score=36.80 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=38.1
Q ss_pred eEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeE
Q 012942 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (453)
Q Consensus 74 ~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~G 133 (453)
.+|.|||.....+..+++++++.+.+.|+..+.+.--+ ......+.+.+++. ..++++
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~ 58 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAA 58 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEE
Confidence 47999998654434688999999999999887776322 12244455555555 344444
No 46
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=68.12 E-value=2.4 Score=42.19 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCCCCC---hH-HHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHH
Q 012942 251 EPLAEVAVQLIHRTGGLAVLAHPWALKN---PA-AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITY 326 (453)
Q Consensus 251 ~~~~eeaI~~I~~aGGvaVLAHP~~~~~---~~-~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~ 326 (453)
....++.++.|+..++.+.+.|||.... +. ...+ ...-.+++|++|+++.....+ .++
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~--~h~~~~~ve~~~~~~~~~~fn----------------~~~ 158 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITR--AHIARDAVEVGNASTRQGVFN----------------KYL 158 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchh--hhhhhhhhccccccchHHHHH----------------HHH
Confidence 3578999999999999999999984311 10 0111 122368899999876553322 267
Q ss_pred HHHHHHcCCeeeeccCCCCC
Q 012942 327 TDLADTYGLLKLGGSDYHGR 346 (453)
Q Consensus 327 ~~lA~~~gLl~tgGSDfHg~ 346 (453)
.+++..++....++||.|-.
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~ 178 (258)
T COG0613 159 KRGAPKYVPPEWADSEAHVG 178 (258)
T ss_pred hccCcccCcccccCHHHHHH
Confidence 78899999999999999954
No 47
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.17 E-value=22 Score=37.98 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhcCCeEEeEEEEEee
Q 012942 89 SPSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEISTI 139 (453)
Q Consensus 89 tp~elv~~A~~~Gl~~IAITDH-dt~~g~~e~~~~a~~~gi~vI~GiEis~~ 139 (453)
-++..|+.|.++|++++=|-|- |.+.++..+.+++++.|..+.--+-.+++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~s 150 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTS 150 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccC
Confidence 3567899999999999999886 55677888888888888866555555543
No 48
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=63.91 E-value=13 Score=39.27 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=44.1
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhcCCeEEeEE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt--~~---g~~e~~~~a~~~gi~vI~Gi 134 (453)
+-++|.|+|...|- .+|+++.+.|...|+..+..-.|.. +. ++..+.+.+++..+.++..+
T Consensus 9 PG~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 9 PGFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred cCEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 44789999988763 5788999999999999997654543 22 34555666666677676665
No 49
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=62.81 E-value=15 Score=38.56 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 252 PLAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
+....+.+.||+.||.++ |+|+++
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 467889999999999887 789984
No 50
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=61.74 E-value=19 Score=37.64 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHcCC-EEE----EeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHH
Q 012942 252 PLAEVAVQLIHRTGG-LAV----LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITY 326 (453)
Q Consensus 252 ~~~eeaI~~I~~aGG-vaV----LAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~ 326 (453)
..++|+|+..|++|- +-| +.|+.........++.|.+.|+|+|++-.+ .+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp-------------------------g~ 103 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP-------------------------GL 103 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH-------------------------HH
Confidence 347899999999998 333 334443333357788999999999999875 35
Q ss_pred HHHHHHcC--CeeeeccC
Q 012942 327 TDLADTYG--LLKLGGSD 342 (453)
Q Consensus 327 ~~lA~~~g--Ll~tgGSD 342 (453)
..++++.+ |.+..+.=
T Consensus 104 i~l~~e~~p~l~ih~S~q 121 (347)
T COG0826 104 IMLARERGPDLPIHVSTQ 121 (347)
T ss_pred HHHHHHhCCCCcEEEeee
Confidence 66777776 77666543
No 51
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=60.75 E-value=20 Score=37.12 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCCC
Q 012942 252 PLAEVAVQLIHRTGGLAV--LAHPWAL 276 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaV--LAHP~~~ 276 (453)
+.+.++++.||+.|+.++ |.|+++.
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 356788999999998876 7887653
No 52
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=60.18 E-value=2.3e+02 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.7
Q ss_pred ceeEceeeeCcCC---CCC--CCHHHHHHHHHHcCCcEEE
Q 012942 72 NVVFELHSHSNFS---DGY--LSPSKLVERAHCNGVKVLA 106 (453)
Q Consensus 72 ~~~~DLH~HT~~S---DG~--~tp~elv~~A~~~Gl~~IA 106 (453)
+=++|.|+|.... ++. .+|+..+..+.+.|+..+.
T Consensus 56 PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~ 95 (389)
T TIGR01975 56 PGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV 95 (389)
T ss_pred cCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe
Confidence 5588999998763 444 6788778888999999886
No 53
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=59.48 E-value=46 Score=36.27 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCCHHHHHHHHHhcCCeEEeEEEEEe
Q 012942 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 90 p~elv~~A~~~Gl~~IAITDHdt-~~g~~e~~~~a~~~gi~vI~GiEis~ 138 (453)
.+..++.|.++|++.+=|.||-+ +.....+.+.+++.|..+...+-.+.
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~ 156 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT 156 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe
Confidence 34569999999999999999944 55677788888889987764444433
No 54
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=59.14 E-value=25 Score=37.15 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=44.0
Q ss_pred ceeEceeeeCcCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCCHHHHHHH
Q 012942 72 NVVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIET 122 (453)
Q Consensus 72 ~~~~DLH~HT~~SD--G--------------------~~tp~elv~~A~-------~~Gl~~IAITDHdt~~g~~e~~~~ 122 (453)
+-+||.|+|...+. | .++|+++...|. ..|+..+. ||.+........++
T Consensus 56 PGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~--d~~~~~~~~~~~~a 133 (445)
T PRK07228 56 PGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIV--DMESVHHTDSAFEA 133 (445)
T ss_pred cCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEE--ccccccChHHHHHH
Confidence 45899999987651 1 135556655555 78877665 88766555666777
Q ss_pred HHhcCCeEEeEEEEE
Q 012942 123 ARRFGMKIIPGVEIS 137 (453)
Q Consensus 123 a~~~gi~vI~GiEis 137 (453)
+.+.|++.+.|.++.
T Consensus 134 ~~~~g~r~~~~~~~~ 148 (445)
T PRK07228 134 AGESGIRAVLGKVMM 148 (445)
T ss_pred HHHcCCeEEEeccee
Confidence 788899888776664
No 55
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.64 E-value=32 Score=33.60 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred hHHHHHHHHHcCCcEEEEeCCC-CC-hhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeecc
Q 012942 279 PAAIIRKLKDVGLHGLEVYRSD-GK-LVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGS 341 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~~~-~~-~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGS 341 (453)
..+.++.+.+.|++|||++... +. ..+.. . .....+.++++++||-+++..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~------~------~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLK------A------GGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccC------c------hHHHHHHHHHHHcCCeEEEec
Confidence 4677888899999999996421 10 00000 0 001257788999999877644
No 56
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=58.36 E-value=3.3 Score=38.42 Aligned_cols=20 Identities=50% Similarity=0.684 Sum_probs=0.0
Q ss_pred cccchhhhhhhccCCCCCCC
Q 012942 9 KRSKDKKKKKKQKRGGGKKK 28 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~k~~ 28 (453)
|.++|+|+|||++.+++|++
T Consensus 83 k~kKK~KKkkKkkKk~~k~~ 102 (154)
T PF06375_consen 83 KKKKKKKKKKKKKKKSKKRH 102 (154)
T ss_dssp --------------------
T ss_pred hhhhhccchhcccccCCCCC
Confidence 33344444444444444433
No 57
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=56.59 E-value=26 Score=34.13 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=31.4
Q ss_pred hHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 279 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
..+.++.+++.|++|||++.+... +.+ .+.++++++||-+|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~--~~~-----------------~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDY--DIE-----------------ELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCC--CHH-----------------HHHHHHHHcCCcEEE
Confidence 456788889999999999875321 111 567889999999886
No 58
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.89 E-value=29 Score=33.54 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeecc
Q 012942 279 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGS 341 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGS 341 (453)
..+.++.+++.|++|||+..+.. . ..+ .+.++++++||-+++-+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-~-~~~-----------------~l~~~l~~~gl~v~~~~ 59 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-W-DAE-----------------ALKARLAAAGLEQVLFN 59 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-C-CHH-----------------HHHHHHHHcCCeEEEEe
Confidence 35677788899999999987542 1 111 56788999999888743
No 59
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.25 E-value=1.3e+02 Score=30.05 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCC-CCChHHHHHHHHHcCCcEEEEeCCCCChh
Q 012942 252 PLAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLV 304 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaVLAHP~~-~~~~~~li~~l~~~GldGIEV~~~~~~~~ 304 (453)
..++..++.++++|---++- |.. +....+++..+.+.|++-|=...|..+.+
T Consensus 104 ~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~e 156 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDE 156 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 45666677777765444433 321 11122344455566777775556554443
No 60
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.70 E-value=33 Score=35.49 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 252 PLAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
+.+.++++.||+.|+.++ |.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 346788899999998876 678765
No 61
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=51.69 E-value=32 Score=36.00 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=10.3
Q ss_pred HHHcCCcEEEEeC
Q 012942 286 LKDVGLHGLEVYR 298 (453)
Q Consensus 286 l~~~GldGIEV~~ 298 (453)
..++|+||||+.-
T Consensus 168 A~~AGfDGVEIh~ 180 (362)
T PRK10605 168 AREAGFDLVELHS 180 (362)
T ss_pred HHHcCCCEEEEcc
Confidence 3568999999963
No 62
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.72 E-value=53 Score=29.71 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhcCC
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~g--~~e~~~~a~~~gi 128 (453)
..+|+++++.|.+.+.+.|+++-..+..- +.+..+..++.|+
T Consensus 38 ~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 38 LSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 37999999999999999999999876554 5666777777665
No 63
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.15 E-value=36 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcC
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG 127 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~g 127 (453)
-+..||+++++.|.+.+.+.|+||-.++.. .++++.+..++.|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 456899999999999999999998877433 3455555555543
No 64
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.04 E-value=41 Score=35.24 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
.+.++++.||+.|+.++ |.|+++
T Consensus 79 ~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 79 GWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHhcCCEEEEeccCCCC
Confidence 45677888888888765 677764
No 65
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=47.56 E-value=1.1e+02 Score=31.36 Aligned_cols=46 Identities=11% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCC
Q 012942 252 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 299 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 299 (453)
|...++++.|++.||++++-|+... ...+++.+.+.|+|++-+...
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~ 243 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMT 243 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCC
Confidence 5678999999999888888898653 335788899999999887654
No 66
>PRK09358 adenosine deaminase; Provisional
Probab=46.27 E-value=18 Score=36.83 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.2
Q ss_pred CceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 012942 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (453)
Q Consensus 71 ~~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (453)
...++|||+|- ||.++|+.+.+.|+++|++.
T Consensus 9 ~lpK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 9 SLPKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred cCCceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 35689999997 78899999999999999774
No 67
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.88 E-value=46 Score=34.51 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
...++++.||+.|+.++ |.|+++
T Consensus 79 ~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 79 GLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCC
Confidence 45677788888888766 567654
No 68
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=45.24 E-value=45 Score=34.47 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
.+.++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 35667788888887765 667654
No 69
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.66 E-value=1.6e+02 Score=29.22 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCcccc--------HHHHHHHHhhCCCCccccCCCCC
Q 012942 182 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN--------LKQAFARYLYDGGPAYSTGSEPL 253 (453)
Q Consensus 182 ~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~~~--------~~~aF~~yl~~g~p~yv~~~~~~ 253 (453)
+...+++..|.+.|.++ +|-|+.-+ +++|..+-|..| .+
T Consensus 24 ~~~~~~~~~l~~~Gad~------------------------iElGiPfsDP~aDGpvIq~a~~~al~~G---------~~ 70 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADA------------------------LELGVPFSDPLADGPTIQAADLRALRAG---------MT 70 (256)
T ss_pred HHHHHHHHHHHHcCCCE------------------------EEECCCCCCCCCcCHHHHHHHHHHHHcC---------CC
Q ss_pred HHHHHHHHHHcC----CEEEEeCCCCCCCh------HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHH
Q 012942 254 AEVAVQLIHRTG----GLAVLAHPWALKNP------AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQ 323 (453)
Q Consensus 254 ~eeaI~~I~~aG----GvaVLAHP~~~~~~------~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~ 323 (453)
++++.+.+++.- .+++. =..|.|+ +.++++++++|+|||=+. +-+.++..
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv--~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~---------------- 130 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIG--LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESG---------------- 130 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEE--EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHH----------------
Q ss_pred HHHHHHHHHcCCeee
Q 012942 324 ITYTDLADTYGLLKL 338 (453)
Q Consensus 324 ~~~~~lA~~~gLl~t 338 (453)
.+.+.|+++|+-..
T Consensus 131 -~~~~~~~~~gl~~i 144 (256)
T TIGR00262 131 -DLVEAAKKHGVKPI 144 (256)
T ss_pred -HHHHHHHHCCCcEE
No 70
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=44.25 E-value=96 Score=30.31 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChh
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV 304 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~ 304 (453)
..++....++.+=|+|+.++-. ..-..+...|.+.|++.||+-.......
T Consensus 3 ~~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~ 52 (211)
T COG0800 3 KMKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAAL 52 (211)
T ss_pred hhHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHH
Confidence 3467778888899999987631 1123466778899999999987654443
No 71
>PRK09989 hypothetical protein; Provisional
Probab=43.31 E-value=54 Score=31.90 Aligned_cols=40 Identities=8% Similarity=-0.024 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCC-CChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 280 AAIIRKLKDVGLHGLEVYRSD-GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 280 ~~li~~l~~~GldGIEV~~~~-~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
.+.++.+++.|+||||+..+. ++.+ .+.++.+++||-+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~--------------------~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTL--------------------QIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHH--------------------HHHHHHHHcCCcEEE
Confidence 456778888999999996542 2222 466788899998875
No 72
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=42.88 E-value=37 Score=32.61 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
=|+..-.+.++.|.+.|.+++ +|-| -.++..+.|.+.++.++||+
T Consensus 64 AGTV~~~e~a~~a~~aGA~Fi-vSP~----~~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 64 AGTVLTAEQAEAAIAAGAQFI-VSPG----FDPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp EES--SHHHHHHHHHHT-SEE-EESS------HHHHHHHHHHTSEEEEEE
T ss_pred EEeccCHHHHHHHHHcCCCEE-ECCC----CCHHHHHHHHHcCCcccCCc
Confidence 466666678999999999998 5554 33678899999999999996
No 73
>PTZ00124 adenosine deaminase; Provisional
Probab=42.64 E-value=22 Score=37.32 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.7
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (453)
..+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 35 lPKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 35 IPKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred CCceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 5689999997 89999999999999999754
No 74
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.37 E-value=63 Score=32.24 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC--------CCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHH
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQIT 325 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~--------~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~ 325 (453)
+.+-|++.|++|=.+. |+. ....++.++..++.|++.|||.+...+..... ...
T Consensus 56 l~eki~l~~~~gV~v~---~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~---------------r~~ 117 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVY---PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEE---------------RLR 117 (244)
T ss_dssp HHHHHHHHHCTT-EEE---E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHH---------------HHH
T ss_pred HHHHHHHHHHcCCeEe---CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHH---------------HHH
Confidence 8899999999983332 431 12346788888999999999999865543322 125
Q ss_pred HHHHHHHcCCeee
Q 012942 326 YTDLADTYGLLKL 338 (453)
Q Consensus 326 ~~~lA~~~gLl~t 338 (453)
+.+.|++.|+.+.
T Consensus 118 ~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 118 LIRKAKEEGFKVL 130 (244)
T ss_dssp HHHHHCCTTSEEE
T ss_pred HHHHHHHCCCEEe
Confidence 6778888887553
No 75
>PRK08508 biotin synthase; Provisional
Probab=41.91 E-value=1.2e+02 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=27.2
Q ss_pred HHHHHHHHHcC-CEEEEeCCCCCCChHHHHHHHHHcCCcEEE
Q 012942 255 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 255 eeaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIE 295 (453)
.++++.|++.+ ++.+.+=.+.. ..+.+.+|+++|+|.+=
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEc
Confidence 57778888876 77665533332 35678889999987764
No 76
>PRK06256 biotin synthase; Validated
Probab=41.81 E-value=93 Score=31.68 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+.++++.|++.-++.+.++.+. ...+.+..|+++|++.+-+
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEec
Confidence 4566777776666666676654 2346677888888887754
No 77
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=41.28 E-value=57 Score=33.61 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHPW 274 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP~ 274 (453)
...++++.||+.|+.++ |.|++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G 104 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAG 104 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--G
T ss_pred HHHHHHHHHHhcCccceeeccccc
Confidence 46788999999999988 47875
No 78
>PRK15108 biotin synthase; Provisional
Probab=41.21 E-value=1.3e+02 Score=31.08 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+.++++.|++.| +.+.++.+.. ..+.+++|+++|+|++=+
T Consensus 113 i~~~i~~ik~~~-i~v~~s~G~l--s~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 113 LEQMVQGVKAMG-LETCMTLGTL--SESQAQRLANAGLDYYNH 152 (345)
T ss_pred HHHHHHHHHhCC-CEEEEeCCcC--CHHHHHHHHHcCCCEEee
Confidence 457788888764 6666776633 367888999999996544
No 79
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=40.86 E-value=70 Score=30.91 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=35.9
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+..|+|+.. ...+..++...-+|+ -| .|+.+.+++.-... .+.++|++|+|.++.
T Consensus 129 PL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~dG~m~~~~-----------------~~~~fA~~~~l~~is 191 (199)
T TIGR00506 129 PLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKP-----------------ELMEYAKKHNLKLIS 191 (199)
T ss_pred eEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCCCCccCHH-----------------HHHHHHHHcCCcEEE
Confidence 456666422 223444444444555 34 68887755443222 678999999999998
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 192 i~d 194 (199)
T TIGR00506 192 IED 194 (199)
T ss_pred HHH
Confidence 887
No 80
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.63 E-value=41 Score=32.59 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEEE
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~GiE 135 (453)
-|+..-.+.++.|.+.|.+++- | -.-.++..++|.+.|+.+|||+.
T Consensus 72 aGTV~~~~~~~~a~~aGA~Fiv-s----P~~~~~v~~~~~~~~i~~iPG~~ 117 (213)
T PRK06552 72 AGTVLDAVTARLAILAGAQFIV-S----PSFNRETAKICNLYQIPYLPGCM 117 (213)
T ss_pred eeeCCCHHHHHHHHHcCCCEEE-C----CCCCHHHHHHHHHcCCCEECCcC
Confidence 4666666678999999999984 3 34457788999999999999975
No 81
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.95 E-value=39 Score=32.66 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
-|+..-.+.++.|.+.|.+++ +|-+- .++..+.|+++|+.++||+
T Consensus 64 AGTVl~~~~a~~a~~aGA~Fi-vsP~~----~~~v~~~~~~~~i~~iPG~ 108 (204)
T TIGR01182 64 AGTVLNPEQLRQAVDAGAQFI-VSPGL----TPELAKHAQDHGIPIIPGV 108 (204)
T ss_pred EEeCCCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCcEECCC
Confidence 455555667999999999999 77764 3578888999999999985
No 82
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.86 E-value=39 Score=34.17 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.6
Q ss_pred HHHcCCcEEEEeC
Q 012942 286 LKDVGLHGLEVYR 298 (453)
Q Consensus 286 l~~~GldGIEV~~ 298 (453)
+.++|+||||+.-
T Consensus 150 a~~aGfDgveih~ 162 (327)
T cd02803 150 AKEAGFDGVEIHG 162 (327)
T ss_pred HHHcCCCEEEEcc
Confidence 4578999999964
No 83
>PRK10027 cryptic adenine deaminase; Provisional
Probab=39.82 E-value=42 Score=37.55 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=43.7
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhcCCeEEeEEEE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt--~~---g~~e~~~~a~~~gi~vI~GiEi 136 (453)
+-++|.|+|...| ..+|+++...|...|+..+..--|.. +. ++..+.+.+...++.+.|.+--
T Consensus 84 PGlIDaHvHiess--~~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps 151 (588)
T PRK10027 84 PGFIDAHLHIESS--MMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSS 151 (588)
T ss_pred ECeEeccccCCcc--cCCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecc
Confidence 4488999997755 24899999999999999987744432 22 4555566666667666655543
No 84
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=39.48 E-value=59 Score=34.21 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHP 273 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP 273 (453)
.+.++++.||+.|+.++ |.|.
T Consensus 84 ~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 84 TAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 35667788888887766 4564
No 85
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=39.10 E-value=79 Score=31.29 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=37.2
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+..|+|+.. ...+..++...-+|+ -| .|+.+.+++.-... .+.++|++|+|.++-
T Consensus 144 PL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~~-----------------~l~~fA~~~~l~iis 206 (230)
T PRK00014 144 PLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGA-----------------SLERYAAKEGLVALA 206 (230)
T ss_pred eEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCHH-----------------HHHHHHHHcCCcEEE
Confidence 456666422 233444444445565 45 78888765543322 678999999999999
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 207 i~d 209 (230)
T PRK00014 207 IDE 209 (230)
T ss_pred HHH
Confidence 888
No 86
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.99 E-value=68 Score=32.96 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCEEE--EeCCCCCCC---------------------------------hHHHHHHH-------HHcCC
Q 012942 254 AEVAVQLIHRTGGLAV--LAHPWALKN---------------------------------PAAIIRKL-------KDVGL 291 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaV--LAHP~~~~~---------------------------------~~~li~~l-------~~~Gl 291 (453)
+..+++.||+.|+.++ |.|.++... ...+++.+ ..+|+
T Consensus 84 ~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGf 163 (338)
T cd04733 84 FREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGF 163 (338)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred cEEEEe
Q 012942 292 HGLEVY 297 (453)
Q Consensus 292 dGIEV~ 297 (453)
||||+.
T Consensus 164 DgVeih 169 (338)
T cd04733 164 DGVQIH 169 (338)
T ss_pred CEEEEc
No 87
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=38.97 E-value=96 Score=27.84 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCC
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~gi 128 (453)
..+|+++++.|.+.+.+.|+++-..+.. .+.+..+..++.|+
T Consensus 36 ~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 36 LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 3789999999999999999999876654 35566666666554
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.69 E-value=67 Score=33.23 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.9
Q ss_pred HHHcCCcEEEEe
Q 012942 286 LKDVGLHGLEVY 297 (453)
Q Consensus 286 l~~~GldGIEV~ 297 (453)
+.++|+||||+.
T Consensus 161 a~~aGfDgVeih 172 (338)
T cd02933 161 AIEAGFDGVEIH 172 (338)
T ss_pred HHHcCCCEEEEc
Confidence 356799999996
No 89
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=38.30 E-value=29 Score=35.03 Aligned_cols=29 Identities=41% Similarity=0.473 Sum_probs=24.5
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCc
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~ 103 (453)
..++|||+|- +|.++++.+++.|++.+..
T Consensus 2 ~pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 2 LPKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp S-EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CCEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 4689999997 7889999999999999975
No 90
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=38.04 E-value=31 Score=29.23 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.4
Q ss_pred ceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 012942 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (453)
Q Consensus 76 DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt 112 (453)
-.|.|+.+|- -.-|-+-.|+..|++.+ +|||.-
T Consensus 53 IVHgH~a~S~---l~hE~i~hA~~mGlktV-fTDHSL 85 (90)
T PF08288_consen 53 IVHGHQAFST---LCHEAILHARTMGLKTV-FTDHSL 85 (90)
T ss_pred EEEeehhhhH---HHHHHHHHHHhCCCcEE-eecccc
Confidence 4699999882 12346788999999998 899953
No 91
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=37.95 E-value=83 Score=30.79 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+..|.|+.. ...+..++...-+|+ -| .|+.+.+++.-... .+.++|++|+|.++.
T Consensus 139 PL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~-----------------~~~~fA~~~~l~~is 201 (214)
T PRK01792 139 PLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTP-----------------EIVEFAKKFGYAVVT 201 (214)
T ss_pred eEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHH-----------------HHHHHHHHcCCcEEE
Confidence 455555421 223334444344555 45 68887655543322 678999999999998
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 202 i~d 204 (214)
T PRK01792 202 IED 204 (214)
T ss_pred HHH
Confidence 887
No 92
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.92 E-value=66 Score=32.97 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012942 253 LAEVAVQLIHRTGGLAV--LAHPWA 275 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaV--LAHP~~ 275 (453)
.+.++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 78 ALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEccCCCc
Confidence 45667777777777755 456543
No 93
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.89 E-value=2.2e+02 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCC
Q 012942 280 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGL 335 (453)
Q Consensus 280 ~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gL 335 (453)
+.+++++++.|+||+=+-. -+.++.+ .+...|+++|+
T Consensus 112 e~F~~~~~~~GvdGlivpD--LP~ee~~-----------------~~~~~~~~~gi 148 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPD--LPPEESD-----------------ELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHHcCCCEEEeCC--CChHHHH-----------------HHHHHHHHcCC
Confidence 5678888999999987654 3344332 56777888875
No 94
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=37.78 E-value=1.2e+02 Score=30.27 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCC-----CCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHH
Q 012942 254 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTD 328 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~-----~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~ 328 (453)
+.|.|++.|++|=-+..-..+ .....++.+++.++.|++.||+.+..-+..... ..++.+
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~---------------~~rlI~ 107 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEE---------------RCNLIE 107 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHH---------------HHHHHH
Confidence 778888888887333222111 011235677788999999999998765433221 126778
Q ss_pred HHHHcCCeee
Q 012942 329 LADTYGLLKL 338 (453)
Q Consensus 329 lA~~~gLl~t 338 (453)
.++++||.+-
T Consensus 108 ~~~~~g~~v~ 117 (237)
T TIGR03849 108 RAKDNGFMVL 117 (237)
T ss_pred HHHhCCCeEe
Confidence 8898887654
No 95
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=37.54 E-value=87 Score=30.74 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=36.2
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+..|+|+.. ...+..++...-+|+ -| .|+.+.+++.-... .+.+||++|+|.++.
T Consensus 140 PL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~-----------------~l~~fA~~h~l~~is 202 (218)
T PRK00910 140 PLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTP-----------------EIIAFGKLHNMPVLT 202 (218)
T ss_pred eEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCCCCcCCHH-----------------HHHHHHHHcCCcEEE
Confidence 455555422 233444444445565 44 68888765443322 678999999999999
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 203 i~d 205 (218)
T PRK00910 203 IED 205 (218)
T ss_pred HHH
Confidence 888
No 96
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=37.40 E-value=43 Score=28.02 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCc
Q 012942 163 PSKYEELENFLANIRDG-----RFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGH 227 (453)
Q Consensus 163 ~~~~~~L~~~L~~ir~~-----R~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~ 227 (453)
+++-..+++++.++... .......|-++|-.+.+.+. | .+...|+|+.||+..|
T Consensus 7 ~egl~~~qq~~~~~~~~~~~~~~~~~~~~l~~~LG~QdV~V~----------G-ip~~sh~ArvLVeADy 65 (84)
T PF07643_consen 7 PEGLKRLQQFLESSNSRSSPAGPAAWVDGLRQALGPQDVTVY----------G-IPADSHFARVLVEADY 65 (84)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHhCCceeEEE----------c-cCCccHHHHHHHHhhh
Confidence 34455677777766654 12222333333333222221 2 3567899999999755
No 97
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.88 E-value=80 Score=30.98 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=29.6
Q ss_pred hHHHHHHHHHcCCcEEEEeCCCC---------ChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 279 PAAIIRKLKDVGLHGLEVYRSDG---------KLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~~~~---------~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
..+.++.++++|++|||+..... +..+ ...+.++++++||-+++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~-----------------~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQ-----------------RLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHH-----------------HHHHHHHHHHcCCceeE
Confidence 35677778888999999974321 1221 12677888999997654
No 98
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=36.51 E-value=2e+02 Score=30.52 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeCCC--CCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHH
Q 012942 250 SEPLAEVAVQLIHRTGGLAVLAHPW--ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYT 327 (453)
Q Consensus 250 ~~~~~eeaI~~I~~aGGvaVLAHP~--~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~ 327 (453)
...++-..+..|-.+|..+|.+--. .+.-....+++.+.....+|=..|-.+.+-+++ .+.
T Consensus 80 ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~-----------------~i~ 142 (374)
T COG0399 80 PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMD-----------------AIM 142 (374)
T ss_pred cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHH-----------------HHH
Confidence 4567888999999999999998542 222234556665555688988888877776765 688
Q ss_pred HHHHHcCCeee
Q 012942 328 DLADTYGLLKL 338 (453)
Q Consensus 328 ~lA~~~gLl~t 338 (453)
++|++|||++.
T Consensus 143 ~la~~~~l~vI 153 (374)
T COG0399 143 ALAKRHGLPVI 153 (374)
T ss_pred HHHHHcCCeEE
Confidence 99999999875
No 99
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.41 E-value=79 Score=35.53 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhcCCeEEeEEEEEe
Q 012942 90 PSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 90 p~elv~~A~~~Gl~~IAITDH-dt~~g~~e~~~~a~~~gi~vI~GiEis~ 138 (453)
.+..++.|+++|++.+=|-|| |.+.+...+.+++++.|..+...+-++.
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 455789999999999999999 4466777788888899987776666654
No 100
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.59 E-value=2.5e+02 Score=28.58 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCHHHHHHHHH----H-cCCEEEEeCCCCCCC--hHHHHHHHHHcCCcEEEEeCCCC-ChhhhhhhhhhhhHHHHHhHHH
Q 012942 252 PLAEVAVQLIH----R-TGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG-KLVDVNFLEKIDNFLLLLCLRQ 323 (453)
Q Consensus 252 ~~~eeaI~~I~----~-aGGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~-~~~~~~~~~~~~n~~~l~~~~~ 323 (453)
++.+|-.++++ . .|.++|++|-..... ..++.+...+.|.||+=+..|++ ...+.. + .
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~----l----------~ 123 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDT----A----------V 123 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHH----H----------H
Confidence 45555444332 3 355999999875432 23455666788999999998854 222211 1 1
Q ss_pred HHHHHHHHHc-CCeeeeccCCCCCCCCCCcccCCccCChhHHHHHhc
Q 012942 324 ITYTDLADTY-GLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 369 (453)
Q Consensus 324 ~~~~~lA~~~-gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 369 (453)
.+|.++|+.- ++.+.- ||-|. ..| +.+|.+++.+|.+
T Consensus 124 ~yf~~va~a~~~lPv~i---Yn~P~-----~tg-~~l~~~~l~~L~~ 161 (309)
T cd00952 124 QFYRDVAEAVPEMAIAI---YANPE-----AFK-FDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHHHhCCCCcEEE---EcCch-----hcC-CCCCHHHHHHHhc
Confidence 2788888887 576665 66653 222 5678888888764
No 101
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=34.60 E-value=78 Score=33.14 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.4
Q ss_pred HHHcCCcEEEEeC
Q 012942 286 LKDVGLHGLEVYR 298 (453)
Q Consensus 286 l~~~GldGIEV~~ 298 (453)
+.++|+||||+.-
T Consensus 159 a~~aGfDgVEih~ 171 (370)
T cd02929 159 ARDAGFDIVYVYA 171 (370)
T ss_pred HHHcCCCEEEEcc
Confidence 3568999999963
No 102
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.20 E-value=1.1e+02 Score=29.86 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 280 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 280 ~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
.+.++.+.++|++|||+.-...... .... ..+ . .....+.++++++||-+++
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~-~~~~-~~~-~-----~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDER-LARL-DWS-K-----EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccc-cccc-cCC-H-----HHHHHHHHHHHHcCCCceE
Confidence 4566777788889999863221000 0000 000 0 0112577888999987654
No 103
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=34.10 E-value=1.1e+02 Score=31.00 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHhhCCCCccccCCCCCHHHHHHHHHHcC---CEEEEeCCCCCCC-hHHHHHHHHHcCCc-EEEE
Q 012942 237 RYLYDGGPAYSTGSEPLAEVAVQLIHRTG---GLAVLAHPWALKN-PAAIIRKLKDVGLH-GLEV 296 (453)
Q Consensus 237 ~yl~~g~p~yv~~~~~~~eeaI~~I~~aG---GvaVLAHP~~~~~-~~~li~~l~~~Gld-GIEV 296 (453)
-||+.|.|.|.|.+ .+.+.++.|.+.. ++.+-++|..... ..+++.++...|++ .||+
T Consensus 81 iyf~ggt~t~l~~~--~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~l 143 (302)
T TIGR01212 81 AYFQAYTNTYAPVE--VLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVEL 143 (302)
T ss_pred EEEECCCcCCCCHH--HHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEE
Confidence 47777777776533 2445556665543 4667778865432 12344555566883 4554
No 104
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=34.03 E-value=1.1e+02 Score=31.53 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred ceeEceeeeCcCC---C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhcCCeEEeE
Q 012942 72 NVVFELHSHSNFS---D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (453)
Q Consensus 72 ~~~~DLH~HT~~S---D--G~~tp~elv~~A~~~Gl~~IAITDHdt~~g~-------~e~~~~a~~~gi~vI~G 133 (453)
+-.+|.|+|.... + ...||+.....|...|...+. |.-...++ .+..+.+...||+.+.+
T Consensus 56 PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 56 PGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred ccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 4578999998632 2 346888899999999998877 54322222 22334445678888844
No 105
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=33.97 E-value=1.1e+02 Score=24.72 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Q 012942 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122 (453)
Q Consensus 90 p~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~ 122 (453)
+.+.+....+.|++.+-|-|+++..+..+..+.
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~ 39 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRA 39 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHh
Confidence 456788889999999999999999998877643
No 106
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=33.74 E-value=1e+02 Score=32.66 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=40.2
Q ss_pred ceeEceeeeCcCC--CCC---------------------CCHHHH-------HHHHHHcCCcEEEEecCCCC------CC
Q 012942 72 NVVFELHSHSNFS--DGY---------------------LSPSKL-------VERAHCNGVKVLALTDHDTM------SG 115 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG~---------------------~tp~el-------v~~A~~~Gl~~IAITDHdt~------~g 115 (453)
+-++|.|+|..++ -|. ++|+++ +..+.+.|+..+. ||... ..
T Consensus 59 PGlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~ 136 (451)
T PRK08203 59 PGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDA 136 (451)
T ss_pred cceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccch
Confidence 4588999999775 222 234433 3445577888775 65322 22
Q ss_pred HHHHHHHHHhcCCeEEeEEEE
Q 012942 116 IPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 116 ~~e~~~~a~~~gi~vI~GiEi 136 (453)
+..+.+++...|++++.+...
T Consensus 137 ~~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 137 LDDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHHcCCeEEEecce
Confidence 566677888899999877544
No 107
>PLN03059 beta-galactosidase; Provisional
Probab=33.70 E-value=60 Score=37.86 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=38.1
Q ss_pred eCCCCCC--ChHHHHHHHHHcCCcEEEEeCC--CCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 271 AHPWALK--NPAAIIRKLKDVGLHGLEVYRS--DGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 271 AHP~~~~--~~~~li~~l~~~GldGIEV~~~--~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
-|++|.. .....+..++++|++.||.|=+ .|.+.+-+| .+.++.- -.++.++|++.||.++-
T Consensus 51 iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~-dF~G~~D------L~~Fl~la~e~GLyvil 116 (840)
T PLN03059 51 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNY-YFEDRYD------LVKFIKVVQAAGLYVHL 116 (840)
T ss_pred cccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCee-eccchHH------HHHHHHHHHHcCCEEEe
Confidence 3777653 1246778889999999998744 344332211 0011111 12788999999998764
No 108
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=32.58 E-value=1.2e+02 Score=31.57 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=28.2
Q ss_pred HHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEeEEEE
Q 012942 95 ERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 95 ~~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~gi~vI~GiEi 136 (453)
..+.+.|+..+. ||.+.. ....+.+++.+.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 567888998876 665543 2345667778899998887654
No 109
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=32.52 E-value=1.7e+02 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=32.5
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHcCC------EEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~aGG------vaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
|++.|.|..++. ..++++++.|++.-+ +.+-++|... ..+.++.|.++|+.-|.+
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i--~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPEST--SPEFFAALRAAGFTRVSL 124 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 455555544332 234666666666433 3556777643 346777777888877766
No 110
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=32.45 E-value=3.6e+02 Score=26.93 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhHHHHHHHHHHHHc-CCeeeec
Q 012942 265 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQITYTDLADTY-GLLKLGG 340 (453)
Q Consensus 265 GGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~~~-~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~-gLl~tgG 340 (453)
|.++|+|+-..... ..++.+...+.|.||+=+..|.+.. .+.. + ..+|.++|+.- ++.+..
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~----i----------~~~~~~v~~a~~~lpi~i- 133 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEE----I----------KDYYREIIAAAASLPMII- 133 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHH----H----------HHHHHHHHHhcCCCCEEE-
Confidence 45899998765332 2345556678999999998876532 2211 1 12788888887 777666
Q ss_pred cCCCCCCCCCCcccCCccCChhHHHHHhc
Q 012942 341 SDYHGRGGHGESELGSVKLPVLVLNDFLK 369 (453)
Q Consensus 341 SDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 369 (453)
|+-|. ...+.++.+.+.+|.+
T Consensus 134 --Yn~P~------~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 134 --YHIPA------LTGVNLTLEQFLELFE 154 (288)
T ss_pred --EeCcc------ccCCCCCHHHHHHHhc
Confidence 66552 2245677778887765
No 111
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.38 E-value=97 Score=26.50 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEe
Q 012942 89 SPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (453)
Q Consensus 89 tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~ 132 (453)
..-+.++.|+++|...|+||+.. ++.+.+.+.++..++
T Consensus 58 e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~~~ 95 (119)
T cd05017 58 ETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPVII 95 (119)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcEEE
Confidence 44567999999999999999632 255566666655543
No 112
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=31.94 E-value=1.8e+02 Score=30.16 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=31.6
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHc----CCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRT----GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~a----GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
|++.|.|..++.. .+++.++.|++. --+.+-++|.... .+.++.|++.|+.-|.+
T Consensus 61 y~GGGTPs~L~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 61 YLGGGTPNCLNDQ--LLDILLSTIKPYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISL 119 (353)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEE
Confidence 4555555444322 134455555442 1367788886542 46677788888876655
No 113
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=31.47 E-value=1.2e+02 Score=28.27 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=34.6
Q ss_pred ceeEceeeeCcCCCCCCCHHH-HHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEeE
Q 012942 72 NVVFELHSHSNFSDGYLSPSK-LVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPG 133 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~e-lv~~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~gi~vI~G 133 (453)
.+.+|+|++ +|.. .++++.+.|.+.|.+ |-... ...++.+.+++.|++++++
T Consensus 54 ~i~~d~k~~--------d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 54 KVLADLKTM--------DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEEEEeec--------cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 355555555 3333 489999999998874 22222 2467788888999888764
No 114
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=31.29 E-value=42 Score=34.46 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=32.3
Q ss_pred eCCCCCC--ChHHHHHHHHHcCCcEEEEeCC--CCChhh--hhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeee
Q 012942 271 AHPWALK--NPAAIIRKLKDVGLHGLEVYRS--DGKLVD--VNFLEKIDNFLLLLCLRQITYTDLADTYGLLKL 338 (453)
Q Consensus 271 AHP~~~~--~~~~li~~l~~~GldGIEV~~~--~~~~~~--~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~t 338 (453)
-|++|.. .....+..++++|++.|++|=+ .|.+.+ .+|. +..+ -..+.++|+++||.++
T Consensus 16 ~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~-g~~d--------l~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 16 FHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFT-GNRD--------LDRFLDLAQENGLYVI 80 (319)
T ss_dssp E-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---S-GGG---------HHHHHHHHHHTT-EEE
T ss_pred eccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCccccc-chhh--------HHHHHHHHHHcCcEEE
Confidence 4777764 2346788899999999999854 222211 1111 0001 1268899999999765
No 115
>PRK07094 biotin synthase; Provisional
Probab=31.17 E-value=2.3e+02 Score=28.51 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEE
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIE 295 (453)
+.++++.|++..++.+-.+++. ...+.++.|+++|++.+-
T Consensus 105 l~~l~~~i~~~~~l~i~~~~g~--~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 105 IADIIKEIKKELDVAITLSLGE--RSYEEYKAWKEAGADRYL 144 (323)
T ss_pred HHHHHHHHHccCCceEEEecCC--CCHHHHHHHHHcCCCEEE
Confidence 5667777777556666556643 235677888888887553
No 116
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=31.10 E-value=1.1e+02 Score=32.46 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEec--CC-------------CCC------CHHHHHHHHHhcCCeEEeEEEEEe
Q 012942 86 GYLSPSKLVERAHCNGVKVLALTD--HD-------------TMS------GIPEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~IAITD--Hd-------------t~~------g~~e~~~~a~~~gi~vI~GiEis~ 138 (453)
-.+.|++.++.|++.|++.+.+|= || ++. -+.++.++|++.||++ |+-.|.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~--G~Y~S~ 150 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKF--GLYHSL 150 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeE--EEEcCH
Confidence 468899999999999999998863 32 221 2467888999999876 445554
No 117
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.93 E-value=71 Score=31.28 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
|+..-.+.++.|.+.|.+++ +|-+-+ ++..+.|.+.++.++||+
T Consensus 76 GTVl~~e~a~~a~~aGA~Fi-VsP~~~----~~v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 76 GSIVDAATAALYIQLGANFI-VTPLFN----PDIAKVCNRRKVPYSPGC 119 (222)
T ss_pred EeCcCHHHHHHHHHcCCCEE-ECCCCC----HHHHHHHHHcCCCEeCCC
No 118
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=30.90 E-value=46 Score=33.70 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.4
Q ss_pred eeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEE
Q 012942 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVL 105 (453)
Q Consensus 73 ~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~I 105 (453)
.++|||+|- ||.++++.+.+.+.++|++..
T Consensus 2 pK~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~~ 31 (324)
T TIGR01430 2 PKAELHLHL---EGSIRPETLLELAQKNGIPLP 31 (324)
T ss_pred CceeeEecc---cCCCCHHHHHHHHHHcCCCCC
Confidence 478999997 788999999999999998753
No 119
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=30.59 E-value=87 Score=32.41 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEe-cC--------------CCCC------CHHHHHHHHHhcCCeEEeEEEEEe
Q 012942 83 FSDGYLSPSKLVERAHCNGVKVLALT-DH--------------DTMS------GIPEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 83 ~SDG~~tp~elv~~A~~~Gl~~IAIT-DH--------------dt~~------g~~e~~~~a~~~gi~vI~GiEis~ 138 (453)
|.-..+.|++.++.|++.|++.+.+| -| +++. =+.++.++|++.||++ |+=.|.
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S~ 160 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYSP 160 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEES
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEecc
Confidence 33567999999999999999999886 23 2221 1467888999999876 444443
No 120
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=29.96 E-value=1.8e+02 Score=30.28 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=37.6
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHc--CCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
|++.|.|.+.+.. .+++.++.|+.. ..+.+-++|... ..+.++.|.+.|+.-|++
T Consensus 63 y~GGGTPs~l~~~--~l~~ll~~i~~~~~~eit~E~~P~~~--~~~~l~~l~~~G~nrisl 119 (370)
T PRK06294 63 FFGGGTPSLVPPA--LIQDILKTLEAPHATEITLEANPENL--SESYIRALALTGINRISI 119 (370)
T ss_pred EECCCccccCCHH--HHHHHHHHHHhCCCCeEEEEeCCCCC--CHHHHHHHHHCCCCEEEE
Confidence 5666666554322 356677777653 368888999764 356788899999987776
No 121
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.38 E-value=2.4e+02 Score=27.36 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCC
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 301 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~ 301 (453)
..++++.+.+.+=++|+-++.. ..-..+.+.+.+.|++.||+-....
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~ 51 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTP 51 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCc
Confidence 4467788899999999976632 1123567778889999999985443
No 122
>PRK01060 endonuclease IV; Provisional
Probab=29.35 E-value=1.8e+02 Score=28.50 Aligned_cols=20 Identities=5% Similarity=0.341 Sum_probs=16.5
Q ss_pred hHHHHHHHHHcCCcEEEEeC
Q 012942 279 PAAIIRKLKDVGLHGLEVYR 298 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~ 298 (453)
..+.++.+.+.|+||||++-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~ 33 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFT 33 (281)
T ss_pred HHHHHHHHHHcCCCEEEEEC
Confidence 45678888899999999973
No 123
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.05 E-value=2.2e+02 Score=27.77 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC---CCCH--HHHHHHHHhcCCeEEe
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDT---MSGI--PEAIETARRFGMKIIP 132 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt---~~g~--~e~~~~a~~~gi~vI~ 132 (453)
....++.++++.+.+.|++.+.+||++. ..|+ .-+.+.++..++++|.
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia 202 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIA 202 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEE
Confidence 4466889999999999999999999874 2333 2233344444555544
No 124
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.43 E-value=4.7e+02 Score=27.13 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCCCCHHH
Q 012942 184 AKDMILKLNKLKLPLKWEH 202 (453)
Q Consensus 184 ~~~iv~kL~~~Gi~i~~E~ 202 (453)
.+++|+.++++|+.|+...
T Consensus 151 Gk~lV~~~N~LgIiiDlSH 169 (313)
T COG2355 151 GKELVREMNELGIIIDLSH 169 (313)
T ss_pred HHHHHHHHHhcCCEEEecc
Confidence 4678888999999887553
No 125
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=28.27 E-value=1.1e+02 Score=29.11 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=40.5
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC---HHHHHHHHHhcCCeEEeEEEEE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG---IPEAIETARRFGMKIIPGVEIS 137 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g---~~e~~~~a~~~gi~vI~GiEis 137 (453)
.+.+|+|+| |-..++...++.+.+.|.+.+.+ |-. .| +.++.+.+++.|++++.-++.+
T Consensus 55 ~i~~D~k~~----di~~~~~~~~~~~~~~gad~vtv--h~e-~g~~~l~~~i~~~~~~g~~~~v~~~~~ 116 (215)
T PRK13813 55 PVIADLKVA----DIPNTNRLICEAVFEAGAWGIIV--HGF-TGRDSLKAVVEAAAESGGKVFVVVEMS 116 (215)
T ss_pred CEEEEeecc----ccHHHHHHHHHHHHhCCCCEEEE--cCc-CCHHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 677899998 33345677778899999998766 433 32 3456677788888776666554
No 126
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.93 E-value=51 Score=29.98 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 284 RKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 284 ~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+.+.+.|++|||+........... ......+.++++++||-+++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~------------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEK------------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHH------------HHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccc------------hHHHHHHHHHHHHcCCeEEE
Confidence 467789999999987644332110 01122688999999998544
No 127
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=27.81 E-value=2.2e+02 Score=29.35 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=17.1
Q ss_pred EEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 267 LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 267 vaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+.+-++|... ..+.++.|+++|+.-|.+
T Consensus 89 itie~np~~l--t~e~l~~l~~~Gv~risi 116 (360)
T TIGR00539 89 ITTEANPELI--TAEWCKGLKGAGINRLSL 116 (360)
T ss_pred EEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 5666777654 235566677777766555
No 128
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.71 E-value=2.2e+02 Score=27.66 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=41.6
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhcCCeEEeEEEEEe
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEIST 138 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g--~~e~~~~a~~~gi~vI~GiEis~ 138 (453)
...+|+|.| ..+|+..++.+.+.|.+.+.+ |-.... ..++.+.+++.|+ ..|+.+.+
T Consensus 65 ~~~lDvHLm------~~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~--~~gval~p 123 (228)
T PTZ00170 65 NTFLDCHLM------VSNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGM--KVGVAIKP 123 (228)
T ss_pred CCCEEEEEC------CCCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCC--eEEEEECC
Confidence 566799999 357999999999999998877 644322 4566777777885 34665554
No 129
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=27.58 E-value=2.8e+02 Score=27.43 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCC--------------C---hHHHHH---HHHHcCCcEEEEeCCCCChhhhhhhhhhh
Q 012942 254 AEVAVQLIHRTGGLAVLAHPWALK--------------N---PAAIIR---KLKDVGLHGLEVYRSDGKLVDVNFLEKID 313 (453)
Q Consensus 254 ~eeaI~~I~~aGGvaVLAHP~~~~--------------~---~~~li~---~l~~~GldGIEV~~~~~~~~~~~~~~~~~ 313 (453)
..+.|+.+++++ ++|.||=.... . .++.|+ .+.++|.|+|-+-.. +.+
T Consensus 114 ~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e--------- 181 (240)
T cd06556 114 HIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVE--------- 181 (240)
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHH---------
Confidence 456788899887 89999976421 0 123443 356889999988654 343
Q ss_pred hHHHHHhHHHHHHHHHHHHcCCeee---eccCCCCC
Q 012942 314 NFLLLLCLRQITYTDLADTYGLLKL---GGSDYHGR 346 (453)
Q Consensus 314 n~~~l~~~~~~~~~~lA~~~gLl~t---gGSDfHg~ 346 (453)
...+++++..+++. +|+++.|.
T Consensus 182 -----------~~~~i~~~~~~P~~~~gag~~~dgq 206 (240)
T cd06556 182 -----------LAKQITEALAIPLAGIGAGSGTDGQ 206 (240)
T ss_pred -----------HHHHHHHhCCCCEEEEecCcCCCce
Confidence 34567777776554 56777774
No 130
>PRK09228 guanine deaminase; Provisional
Probab=27.46 E-value=1.6e+02 Score=31.35 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHcCCcEEEEecCCCCC--CHHHHHHHHHhcCCeEEeEEEEE
Q 012942 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (453)
Q Consensus 96 ~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~gi~vI~GiEis 137 (453)
.+.+.|...+. ||.+.. ..+.+.+++.+.|++.+.|.++.
T Consensus 123 e~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 123 ELLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 35677877765 775543 34556667778899998887764
No 131
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.44 E-value=3.8e+02 Score=25.97 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHH
Q 012942 253 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADT 332 (453)
Q Consensus 253 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~ 332 (453)
+++.-|+...++|.=.|.-|......+.+.+..+++.|+..-=+.+|..+.+ .+..+...
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~--------------------~i~~~l~~ 128 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLH--------------------HLEYIMDK 128 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHH--------------------HHHHHHHh
Confidence 5788889999999999999997666667788888999998888889876655 34566778
Q ss_pred cCCeeeeccCC
Q 012942 333 YGLLKLGGSDY 343 (453)
Q Consensus 333 ~gLl~tgGSDf 343 (453)
.+++...+.+-
T Consensus 129 ~D~vlvMtV~P 139 (220)
T PRK08883 129 VDLILLMSVNP 139 (220)
T ss_pred CCeEEEEEecC
Confidence 88777777653
No 132
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=27.26 E-value=49 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=18.9
Q ss_pred ceeEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEE
Q 012942 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVL 105 (453)
Q Consensus 72 ~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~I 105 (453)
+=++|+|+|-.+. .....+......+.+.|+..|
T Consensus 34 PG~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 34 PGFIDMHTHLGEPGWQSLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp E-EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEEE
T ss_pred CCeEeeeeccccccccccchhhHHHHHHCcceeeC
Confidence 4488999997743 233333445555557776543
No 133
>PRK06380 metal-dependent hydrolase; Provisional
Probab=27.23 E-value=1.6e+02 Score=30.70 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=39.5
Q ss_pred ceeEceeeeCcCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Q 012942 72 NVVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG-------------------~~tp~el-------v~~A~~~Gl~~IAITDHdt~~g~~e~~~~a 123 (453)
+-++|.|+|...+ .| ..+++++ +..+.+.|...+ .|+. .....+.+++
T Consensus 54 PG~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~--~~~~~~~~a~ 129 (418)
T PRK06380 54 PGLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLY--YSEDIIAKAA 129 (418)
T ss_pred cCEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Eccc--cChHHHHHHH
Confidence 4588999998765 22 2455543 445577888865 4653 2234555677
Q ss_pred HhcCCeEEeEEEE
Q 012942 124 RRFGMKIIPGVEI 136 (453)
Q Consensus 124 ~~~gi~vI~GiEi 136 (453)
.+.|++.+.|...
T Consensus 130 ~~~G~r~~~~~~~ 142 (418)
T PRK06380 130 EELGIRAFLSWAV 142 (418)
T ss_pred HHhCCeEEEeccc
Confidence 7889988887654
No 134
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.13 E-value=57 Score=32.86 Aligned_cols=30 Identities=40% Similarity=0.548 Sum_probs=26.0
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~ 104 (453)
..++|||+|- +|.++++.+.+.+.++|.+.
T Consensus 2 lpK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 2 LPKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CCceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 3589999997 78899999999999998764
No 135
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=27.06 E-value=1.3e+02 Score=31.86 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCCcEEEEeC----CCCChh-hhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 279 PAAIIRKLKDVGLHGLEVYR----SDGKLV-DVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~----~~~~~~-~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+.+.++.+++.|++|||++. |..... +.+. ....+.+.++++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~-------------~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQ-------------IVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHH-------------HHHHHHHHHHHhCCeEEE
Confidence 45677888999999999984 322221 1100 012577889999997554
No 136
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.06 E-value=1.2e+02 Score=26.19 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC--CCCCHHHHHHHHHhc
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHD--TMSGIPEAIETARRF 126 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHd--t~~g~~e~~~~a~~~ 126 (453)
-...+++++++.|.+.+.++|+|+==+ +.....++.+..++.
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 445889999999999999999996432 222334444444444
No 137
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.64 E-value=2.5e+02 Score=29.59 Aligned_cols=55 Identities=9% Similarity=0.256 Sum_probs=30.6
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHc------CCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRT------GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~a------GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
||+.|.|...+.. .++++++.|++. .-+.+-++|... ..+.++.|+++|+.-|.+
T Consensus 71 y~GGGTps~l~~~--~l~~ll~~i~~~~~~~~~~eit~E~~P~~l--t~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 71 FFGGGTPSLLSVE--QLERILTTLDQRFGIAPDAEISLEIDPGTF--DLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhCCCCCCCEEEEEeCCCcC--CHHHHHHHHHCCCCEEEE
Confidence 4555555443211 245566666543 235666777654 245677777777776655
No 138
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.57 E-value=1.3e+02 Score=26.04 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE-eE
Q 012942 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII-PG 133 (453)
Q Consensus 91 ~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI-~G 133 (453)
.++++.+.+.|.+.+-+.-. .--+++.+.+++.|++++ |+
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred HHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 46899999999999999776 445778889999999988 54
No 139
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.24 E-value=3.4e+02 Score=26.51 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHcCCEEEEeC--CCC-CCChHHHHHHHHHcCCcEEEEeCCCCChh
Q 012942 252 PLAEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLV 304 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaVLAH--P~~-~~~~~~li~~l~~~GldGIEV~~~~~~~~ 304 (453)
..+++-++...++|.-.|+-| |.. .....+++..+.+.|++.+=+.+|..+.+
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e 143 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDL 143 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 478888999999998888888 332 23345678888899999999999976655
No 140
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=26.21 E-value=3e+02 Score=27.59 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=48.4
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeecc
Q 012942 265 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGS 341 (453)
Q Consensus 265 GGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~~~-~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGS 341 (453)
|-++|+|+-+.... ..++.+...+.|.||+=+..|.+.. .+.. + ..+|.++|+.-++.+..
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~----l----------~~~f~~va~a~~lPv~i-- 135 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEE----I----------CDYYREIIDSADNPMIV-- 135 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHH----H----------HHHHHHHHHhCCCCEEE--
Confidence 45889998865432 2345566678899999999886432 2211 1 12677778776654443
Q ss_pred CCCCCCCCCCcccCCccCChhHHHHHhc
Q 012942 342 DYHGRGGHGESELGSVKLPVLVLNDFLK 369 (453)
Q Consensus 342 DfHg~~~~~~~~lG~~~~p~~~~~~~~~ 369 (453)
|+-|. ...+.++.+.+.+|.+
T Consensus 136 -Yn~P~------~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 136 -YNIPA------LTGVNLSLDQFNELFT 156 (293)
T ss_pred -EeCch------hhccCCCHHHHHHHhc
Confidence 33221 2234566777777654
No 141
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=26.19 E-value=87 Score=25.96 Aligned_cols=40 Identities=38% Similarity=0.451 Sum_probs=25.0
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 012942 218 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 263 (453)
Q Consensus 218 ia~aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~ 263 (453)
+.+||.++||-+-- | .--||-.|.|+|++. -..|-.+|++
T Consensus 24 Vy~AL~EKGYnPin-Q-ivGYllSGDPaYIts----h~nAR~lIr~ 63 (79)
T PF06135_consen 24 VYAALEEKGYNPIN-Q-IVGYLLSGDPAYITS----HNNARNLIRK 63 (79)
T ss_pred HHHHHHHcCCChHH-H-HHhheecCCCccccC----cccHHHHHHH
Confidence 45677777775421 1 236888999999974 3445455544
No 142
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.94 E-value=2.6e+02 Score=29.02 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred HHHHHHHHHHc----C--CEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 254 AEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 254 ~eeaI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+++.++.|++. + -+.+-++|... ..+.++.|+++|+.-|.+
T Consensus 70 l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~G~~rvsi 116 (377)
T PRK08599 70 LERLLTAIHRNLPLSGLEEFTFEANPGDL--TKEKLQVLKDSGVNRISL 116 (377)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 45566666654 2 35667777544 245677777778766655
No 143
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.69 E-value=2.4e+02 Score=26.10 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=18.9
Q ss_pred HHHHHHHHc-CCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeC
Q 012942 256 VAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 298 (453)
Q Consensus 256 eaI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~ 298 (453)
+.|+.+++. .++++.+|-.........++.+.++|.|+|=+..
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 344444443 3455555532211111233445555666555544
No 144
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=25.61 E-value=31 Score=36.77 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=8.5
Q ss_pred CcEEEEeCCCCChh
Q 012942 291 LHGLEVYRSDGKLV 304 (453)
Q Consensus 291 ldGIEV~~~~~~~~ 304 (453)
.+|+||..-.-+.+
T Consensus 276 ~~~~EV~~i~~P~~ 289 (396)
T PF09692_consen 276 ICGFEVTSIHLPSE 289 (396)
T ss_pred cceeEEEeeeCCCH
Confidence 57888876543333
No 145
>PRK05473 hypothetical protein; Provisional
Probab=25.58 E-value=94 Score=26.16 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=25.1
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHH
Q 012942 218 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 263 (453)
Q Consensus 218 ia~aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~ 263 (453)
+..||.++||-+-- | .--||-.|.|+|++.. ..|-.+|+.
T Consensus 27 Vy~AL~EKGYNPin-Q-iVGYllSGDPaYItsh----~nAR~lIrk 66 (86)
T PRK05473 27 VYDALEEKGYNPIN-Q-IVGYLLSGDPAYIPRH----NDARNLIRK 66 (86)
T ss_pred HHHHHHHcCCChHH-H-HHhhhccCCCCccCCc----ccHHHHHHH
Confidence 45677788875421 1 2368889999999743 344444444
No 146
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=25.14 E-value=1.6e+02 Score=27.09 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCC--CCHHHHHHHHHhcCCeEE
Q 012942 86 GYLSPSKLVERAHCNGVKVLALTDHDTM--SGIPEAIETARRFGMKII 131 (453)
Q Consensus 86 G~~tp~elv~~A~~~Gl~~IAITDHdt~--~g~~e~~~~a~~~gi~vI 131 (453)
...||+|++++|.+...++|.|+=.+-- .-++.+.+++++.|+.-|
T Consensus 48 ~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i 95 (143)
T COG2185 48 LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDI 95 (143)
T ss_pred CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcce
Confidence 3579999999999999999999754322 234667777887765433
No 147
>PRK15447 putative protease; Provisional
Probab=25.12 E-value=2.6e+02 Score=28.35 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCC-C-hHHHHHHHHHcCCcEEEEeCC
Q 012942 252 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRS 299 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaVLAHP~~~~-~-~~~li~~l~~~GldGIEV~~~ 299 (453)
-.+.|+|+.+|++|--++++=|--.. + ....+..+.+.|.++|.|-+.
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~ 97 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDL 97 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCH
Confidence 35678999999999888898886432 2 234556677889999998764
No 148
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=25.04 E-value=7.7e+02 Score=25.41 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCceeEceeeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHH-HhcCCeEEeEEEEEeeeCCC
Q 012942 70 DNNVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETA-RRFGMKIIPGVEISTIFCQS 143 (453)
Q Consensus 70 ~~~~~~DLH~HT~~S-DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g----~~e~~~~a-~~~gi~vI~GiEis~~~~~~ 143 (453)
.+..++|.++|-.+= .-....+.+......-.++.|++.||-.-.+ ...+.++. .+.
T Consensus 77 ~~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~----------------- 139 (325)
T cd01306 77 RGVLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKY----------------- 139 (325)
T ss_pred CCcchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhc-----------------
Confidence 357888999998775 4455677777777788899999999976554 22333322 111
Q ss_pred CCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHH----HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHH
Q 012942 144 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRF----LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVA 219 (453)
Q Consensus 144 ~~~~~~~~vHILgYg~d~~~~~~~~L~~~L~~ir~~R~----~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia 219 (453)
|.+ .+++.+++.+.++.+. +..+.+++...+.|+++.. +... +..++
T Consensus 140 --------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~gl~vas-----H~d~----~~~~v- 190 (325)
T cd01306 140 --------------GLS-----DEEVEEAILERKARAAAYAPANRSELAALARARGIPLAS-----HDDD----TPEHV- 190 (325)
T ss_pred --------------CCC-----HHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHCCCcEEE-----ecCC----ChHHH-
Confidence 111 2456666655554443 3345556666677777520 0000 01111
Q ss_pred HHHHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCC----ChHHHHHHHHHcCCcEEE
Q 012942 220 RAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 220 ~aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~----~~~~li~~l~~~GldGIE 295 (453)
+..++.|... .+.|...++++.+++.|-..+...|.... .....+.++...|+. -
T Consensus 191 ~~a~~~Gv~~-------------------~E~p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~~~~~~ll~~Gv~--~ 249 (325)
T cd01306 191 AEAHELGVVI-------------------SEFPTTLEAAKAARELGLQTLMGAPNVVRGGSHSGNVSARELAAHGLL--D 249 (325)
T ss_pred HHHHHCCCee-------------------ccCCCCHHHHHHHHHCCCEEEecCcccccCccccccHhHHHHHHCCCe--E
Confidence 1122222221 13456788999999999988877774221 111235567788873 3
Q ss_pred EeCCCCCh
Q 012942 296 VYRSDGKL 303 (453)
Q Consensus 296 V~~~~~~~ 303 (453)
++.+++.+
T Consensus 250 al~SD~~p 257 (325)
T cd01306 250 ILSSDYVP 257 (325)
T ss_pred EEEcCCCc
Confidence 56665543
No 149
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=25.03 E-value=1.3e+02 Score=30.48 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCC
Q 012942 252 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 299 (453)
Q Consensus 252 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 299 (453)
|...++++.||..|+-.+.-|.... ...+++.+.+.|+|++.+-+.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~ 265 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEK 265 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TT
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCC
Confidence 4568999999999984555677542 234788899999999998543
No 150
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=24.89 E-value=1.5e+02 Score=30.25 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=35.0
Q ss_pred ceeEceeeeCcCC--CC--------------------CCCHHHHH-------HHHHHcCCcEEEEecCCCCCCHHHHHHH
Q 012942 72 NVVFELHSHSNFS--DG--------------------YLSPSKLV-------ERAHCNGVKVLALTDHDTMSGIPEAIET 122 (453)
Q Consensus 72 ~~~~DLH~HT~~S--DG--------------------~~tp~elv-------~~A~~~Gl~~IAITDHdt~~g~~e~~~~ 122 (453)
+=++|.|+|...+ .| ..+++++. ..+.+.|+..+. ||..... ....+.
T Consensus 56 PGlid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~~~~~-~~~~~~ 132 (411)
T cd01298 56 PGLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFA--DMYFFYP-DAVAEA 132 (411)
T ss_pred cCccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEE--Cccccch-HHHHHH
Confidence 4488999998654 11 13455443 334467877654 6654433 344455
Q ss_pred HHhcCCeEEeEEEE
Q 012942 123 ARRFGMKIIPGVEI 136 (453)
Q Consensus 123 a~~~gi~vI~GiEi 136 (453)
+...|+.++.+.++
T Consensus 133 ~~~~g~r~~~~~~~ 146 (411)
T cd01298 133 AEELGIRAVLGRGI 146 (411)
T ss_pred HHHhCCeEEEEcce
Confidence 55667776655544
No 151
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=24.87 E-value=2.7e+02 Score=27.85 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=48.6
Q ss_pred cCCEEEEeCCCCCCChH---HHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 264 TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 264 aGGvaVLAHP~~~~~~~---~li~~l~~~GldGIEV~~~~~~~-~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
.|.++|++|-.. +.. ++.+...+.|.||+-+..|++.. .+.. + ..+|.++|+.-++.+.-
T Consensus 67 ~~~~pvi~gv~~--~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~----i----------~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 67 AGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEG----L----------YAHVEAVCKSTDLGVIV 130 (289)
T ss_pred CCCCCEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH----H----------HHHHHHHHhcCCCCEEE
Confidence 466999999864 333 45556678899999999886532 2211 1 12677888876765544
Q ss_pred ccCCCCCCCCCCcccCCccCChhHHHHHhc
Q 012942 340 GSDYHGRGGHGESELGSVKLPVLVLNDFLK 369 (453)
Q Consensus 340 GSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 369 (453)
|+-+ .+.+|.+.+.+|.+
T Consensus 131 ---Yn~~---------g~~l~~~~l~~L~~ 148 (289)
T cd00951 131 ---YNRA---------NAVLTADSLARLAE 148 (289)
T ss_pred ---EeCC---------CCCCCHHHHHHHHh
Confidence 3311 13467777777764
No 152
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=24.86 E-value=1.7e+02 Score=28.70 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCeeeeccC
Q 012942 325 TYTDLADTYGLLKLGGSD 342 (453)
Q Consensus 325 ~~~~lA~~~gLl~tgGSD 342 (453)
.+.++|++|+|.++.++|
T Consensus 187 ~~~~fA~~~~l~~v~i~d 204 (217)
T PRK03353 187 ECIAFAKQHNMPVLTIED 204 (217)
T ss_pred HHHHHHHHcCCcEEEHHH
Confidence 577999999999999888
No 153
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=24.84 E-value=3.3e+02 Score=26.88 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEE
Q 012942 255 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 294 (453)
Q Consensus 255 eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGI 294 (453)
+++++.+++. |+.+..+++.. ..+.++.|+++|++.+
T Consensus 101 ~~i~~~~~~~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 101 EAMVQIVEEM-GLKTCATLGLL--DPEQAKRLKDAGLDYY 137 (296)
T ss_pred HHHHHHHHhC-CCeEEecCCCC--CHHHHHHHHHcCCCEE
Confidence 3444444444 46667777532 3567788888888873
No 154
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=24.79 E-value=2e+02 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhcCCeEE
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKII 131 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g----~~e~~~~a~~~gi~vI 131 (453)
++..+++++++.+++.|++.+-|..++.... ..++.+.....|+.+.
T Consensus 12 ~~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 12 FGELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEE
Confidence 3788999999999999999999998544433 5677777777777664
No 155
>PLN02905 beta-amylase
Probab=24.57 E-value=1.7e+02 Score=33.13 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012942 281 AIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 348 (453)
Q Consensus 281 ~li~~l~~~GldGIEV--~~~~---~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 348 (453)
.-+..|+.+|+|||+| |... ..+.+-+|- --..+.+++++.||-+-.==-||.-+.
T Consensus 290 a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs------------gY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 290 KQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN------------GYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 4567789999999987 3321 111111110 011577899999997777777998653
No 156
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=24.45 E-value=1.6e+02 Score=30.75 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=37.1
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
+..|+|+.. ...+..++...-+|+ -| .|+.+.+++..... .+.++|++|+|.++.
T Consensus 128 PL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~-----------------~l~~fA~~h~l~~is 190 (339)
T PRK09314 128 PLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRD-----------------DLEDFAKKHNLKMIY 190 (339)
T ss_pred eEEEcCCCcccCCCCCchhhHHHHHcCCCceEEEEEEecCCCCcccHH-----------------HHHHHHHHcCCcEEE
Confidence 455666422 233444444445565 45 78888766544322 578999999999999
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 191 i~d 193 (339)
T PRK09314 191 VSD 193 (339)
T ss_pred HHH
Confidence 999
No 157
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.40 E-value=2.8e+02 Score=28.94 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=37.2
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHc----C--CEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
|++.|.|.+.+.. .+++.++.|++. . -+.+-++|.... .+.++.|+++|+.=|.+
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSL 120 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEE
Confidence 6677777655422 245667777652 2 478899997643 36788899999886665
No 158
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.39 E-value=4.2e+02 Score=26.39 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 280 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 280 ~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
...++...+.|++.|-++.+.++.+... ...++|+++|+.+..
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~-----------------~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLE-----------------VAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHH-----------------HHHHHHHHCCCeEEE
Confidence 3456677788999999998776654332 567889999976553
No 159
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=24.26 E-value=5.7e+02 Score=23.63 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCeEEe-EEEEEeeeCCCCCCCCCCcEEEEEEeccCCC
Q 012942 101 GVKVLALTDHDTMSGIPEAIETARRFGMKIIP-GVEISTIFCQSRGSESEEPVHILAYYSSCGP 163 (453)
Q Consensus 101 Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~-GiEis~~~~~~~~~~~~~~vHILgYg~d~~~ 163 (453)
++.+ -|||.-|-..+..+.+..+++|+..+. =+|.+..-. ....+.+|+|-|-++.+.
T Consensus 16 ~MrF-LIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~----~lek~GI~Vldw~f~dg~ 74 (173)
T KOG2836|consen 16 NMRF-LITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTT----PLEKEGITVLDWPFDDGA 74 (173)
T ss_pred ceEE-EEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCc----hhhhcCceEeecccccCC
Confidence 3444 489888888888899988999986554 445543211 112357999999776543
No 160
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.24 E-value=3.3e+02 Score=26.38 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCC
Q 012942 256 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 301 (453)
Q Consensus 256 eaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~ 301 (453)
++++.+...+=++|+..... ..-..+.+.|.+.|+.-|||-....
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~ 49 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNP 49 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCc
Confidence 56788899999999976521 1223567778899999999987643
No 161
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.91 E-value=1.4e+02 Score=29.89 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCcccc--------HHHHHHHHhhCCCCccccCCCC
Q 012942 181 FLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN--------LKQAFARYLYDGGPAYSTGSEP 252 (453)
Q Consensus 181 ~~R~~~iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~~~--------~~~aF~~yl~~g~p~yv~~~~~ 252 (453)
.+...+++..|.+.|.++ +|-|+.-+ +++|..+-|..| .
T Consensus 23 ~~~~~~~~~~l~~~GaD~------------------------iEiGiPfSDP~ADGpvIq~A~~rAL~~G---------~ 69 (259)
T PF00290_consen 23 LETTLEILKALEEAGADI------------------------IEIGIPFSDPVADGPVIQKASQRALKNG---------F 69 (259)
T ss_dssp HHHHHHHHHHHHHTTBSS------------------------EEEE--SSSCTTSSHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHcCCCE------------------------EEECCCCCCCCCCCHHHHHHHHHHHHCC---------C
Q ss_pred CHHHHHHHHHHcC--------CEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHH
Q 012942 253 LAEVAVQLIHRTG--------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQI 324 (453)
Q Consensus 253 ~~eeaI~~I~~aG--------GvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~ 324 (453)
+++++++++++.- -+.....|......+.+++++.+.|+|| +.=|+-+.++..
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG--lIipDLP~ee~~----------------- 130 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDG--LIIPDLPPEESE----------------- 130 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEE--EEETTSBGGGHH-----------------
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCE--EEEcCCChHHHH-----------------
Q ss_pred HHHHHHHHcCCeee
Q 012942 325 TYTDLADTYGLLKL 338 (453)
Q Consensus 325 ~~~~lA~~~gLl~t 338 (453)
.+.+.|+++||-.+
T Consensus 131 ~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 131 ELREAAKKHGLDLI 144 (259)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred HHHHHHHHcCCeEE
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.89 E-value=96 Score=29.95 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 85 DG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
-|+..-.+.++.|.+.|.+++ +|-| -.++..+.|++.++.++||+
T Consensus 60 AGTVl~~e~a~~ai~aGA~Fi-vSP~----~~~~vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 60 AGTILNAKQFEDAAKAGSRFI-VSPG----TTQELLAAANDSDVPLLPGA 104 (201)
T ss_pred eEeCcCHHHHHHHHHcCCCEE-ECCC----CCHHHHHHHHHcCCCEeCCC
Confidence 466555667899999999998 5554 33678889999999999996
No 163
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.54 E-value=1.5e+02 Score=29.65 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
...++..++.|++.|++.+-|-|= ...-..++.+.|++.|+.+|+-+
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEe
Confidence 357789999999999999999873 33334456777888898887643
No 164
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.50 E-value=1.7e+02 Score=28.62 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 280 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 280 ~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
.+.++.+.+.|++|||+.-+..... ...+. .. ..+...+.+..+++||-+++
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~-~~~~~-~~------~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDR-LSRLD-WS------REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccch-hhccC-CC------HHHHHHHHHHHHHcCCCcee
Confidence 4566677788999999964322100 00000 00 00112567788899987653
No 165
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.43 E-value=2.5e+02 Score=25.15 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhc
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~--g~~e~~~~a~~~ 126 (453)
..+++++++.|.+.+.+.|+++=..+.. ...+..+..++.
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4789999999999999999998765532 234444444444
No 166
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=23.14 E-value=2.6e+02 Score=28.37 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCC
Q 012942 252 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 299 (453)
Q Consensus 252 ~~~eeaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 299 (453)
|...++++.|++.| |+.|+=|.+. ...+++.+.+.|++++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 56789999999997 7778777653 236788999999999866553
No 167
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.09 E-value=1.5e+02 Score=23.33 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc
Q 012942 187 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 229 (453)
Q Consensus 187 iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~~ 229 (453)
|.+...+.|++-+..|+.+..|-.-..+--+..++|.++||+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 3344567899999999988876431122334667788888876
No 168
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=39 Score=37.69 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=15.1
Q ss_pred HHcCCcEEEEecCCCCCCHHHHHHHH
Q 012942 98 HCNGVKVLALTDHDTMSGIPEAIETA 123 (453)
Q Consensus 98 ~~~Gl~~IAITDHdt~~g~~e~~~~a 123 (453)
.+.|+.++.+|--+...-....+.++
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~a 264 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLA 264 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHH
Confidence 66777777777555544444444333
No 169
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=22.89 E-value=1.7e+02 Score=30.18 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcC-CEEEEeC-------CC-CC-CChHHHHHHHHHcCCcEE
Q 012942 254 AEVAVQLIHRTG-GLAVLAH-------PW-AL-KNPAAIIRKLKDVGLHGL 294 (453)
Q Consensus 254 ~eeaI~~I~~aG-GvaVLAH-------P~-~~-~~~~~li~~l~~~GldGI 294 (453)
+.++++.|++.+ ++.+.+- +- .. ....+.+++|+++|++.+
T Consensus 105 ~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i 155 (343)
T TIGR03551 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccc
Confidence 367888888875 5665442 10 01 123578889999999844
No 170
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=22.60 E-value=5.4e+02 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=15.4
Q ss_pred CCccccCCCCCHHHHHHHHHHc
Q 012942 243 GPAYSTGSEPLAEVAVQLIHRT 264 (453)
Q Consensus 243 ~p~yv~~~~~~~eeaI~~I~~a 264 (453)
+|+|+|.++.++.+.+...-.|
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~A 115 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKA 115 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHH
Confidence 4788888877787777654443
No 171
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=22.49 E-value=1.1e+02 Score=34.07 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=40.1
Q ss_pred ceeEceeeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCC--CCCC---HHHHHHHHHhcCCeEEeEE
Q 012942 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD--TMSG---IPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 72 ~~~~DLH~HT~~SDG~~tp~elv~~A~~~Gl~~IAITDHd--t~~g---~~e~~~~a~~~gi~vI~Gi 134 (453)
+-++|.|+|...|- .+|+++.+.+...|...+..--|. ++.+ +..+.+.+++..+.+..++
T Consensus 50 PG~ID~H~Hi~~~~--~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~ 115 (552)
T TIGR01178 50 PGFIDAHIHIESSM--LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFML 115 (552)
T ss_pred eCeEecccccCCCC--CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEEC
Confidence 45889999986542 368888888999999888664454 2223 4445555555566654444
No 172
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.38 E-value=49 Score=30.93 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred hhccChHhhhhhhHHHHhhhcccccc
Q 012942 425 SLWLTNEERQSAEFEAIKLKLSHVSI 450 (453)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (453)
|.|||++|.-.-=+++|+.+.+...+
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 67999999999999999999876554
No 173
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=22.19 E-value=23 Score=27.66 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=8.6
Q ss_pred ccchhhhhhhccC
Q 012942 10 RSKDKKKKKKQKR 22 (453)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (453)
|..+.|+||+|||
T Consensus 16 ~~sr~k~~KRKWR 28 (59)
T PF12065_consen 16 RRSRSKPKKRKWR 28 (59)
T ss_pred ccccCCccchhHH
Confidence 5556667777775
No 174
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=22.07 E-value=3.5e+02 Score=25.68 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-CC----HHHHHHHHHhcCCeEEeEEEE
Q 012942 88 LSPSKLVERAHCNGVKVLALTDHDTM-SG----IPEAIETARRFGMKIIPGVEI 136 (453)
Q Consensus 88 ~tp~elv~~A~~~Gl~~IAITDHdt~-~g----~~e~~~~a~~~gi~vI~GiEi 136 (453)
.+|.++++...+.|++.+-++|=|.. .+ +....+.++..+++++.|=-|
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI 83 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGI 83 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCc
Confidence 58999999999999999999998765 23 333444445556666554333
No 175
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=22.00 E-value=3.8e+02 Score=26.88 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=53.1
Q ss_pred CCHHHHHHHHH-----HcCCEEEEeCCCCCCC--hHHHHHHHHHcCCcEEEEeCCCCChh-hhhhhhhhhhHHHHHhHHH
Q 012942 252 PLAEVAVQLIH-----RTGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGKLV-DVNFLEKIDNFLLLLCLRQ 323 (453)
Q Consensus 252 ~~~eeaI~~I~-----~aGGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~~~~-~~~~~~~~~n~~~l~~~~~ 323 (453)
++.+|-.++++ ..|-++|++|-+.... ..++.+...+.|.|||=+..|++... +.. + -
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~----i----------~ 116 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPE----I----------K 116 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH----H----------H
Confidence 55555444443 2355889998865432 23455666788999999988854332 211 1 1
Q ss_pred HHHHHHHHHc-CCeeeeccCCCCCCCCCCcccCCccCChhHHHHHhc
Q 012942 324 ITYTDLADTY-GLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 369 (453)
Q Consensus 324 ~~~~~lA~~~-gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 369 (453)
.+|.++|+.. ++.+.- ||-|. ...+.++.+.+.+|.+
T Consensus 117 ~yf~~v~~~~~~lpv~l---Yn~P~------~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 117 HYYDTIIAETGGLNMIV---YSIPF------LTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHhhCCCCCEEE---EeCcc------ccccCcCHHHHHHHhc
Confidence 2677777654 444432 44432 1123566666666654
No 176
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=21.95 E-value=4.3e+02 Score=25.62 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHcC-CEEEEeCCCCCCChHHHHHHHHHcCCcEEE
Q 012942 256 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE 295 (453)
Q Consensus 256 eaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIE 295 (453)
++|+.|++.+ .+.+-+|=. ..++...++.+..+|.|-|=
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEE
Confidence 3444444443 444444433 22334444444444544443
No 177
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.61 E-value=2.4e+02 Score=27.17 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEE
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI 131 (453)
..+.++.++.+++.|++.|-+.. ..-....++.+.+++.|+.+.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 36899999999999999999953 112346777888888998864
No 178
>PRK07143 hypothetical protein; Provisional
Probab=21.57 E-value=4.3e+02 Score=26.77 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=15.0
Q ss_pred hHHHHHHHHHcCCcEEEEeC
Q 012942 279 PAAIIRKLKDVGLHGLEVYR 298 (453)
Q Consensus 279 ~~~li~~l~~~GldGIEV~~ 298 (453)
.++-+..|...|+|-+-+..
T Consensus 67 ~~er~~~l~~~Gvd~~~~~~ 86 (279)
T PRK07143 67 LNSRLQTLANLGFKNIILLD 86 (279)
T ss_pred HHHHHHHHHHCCCCEEEEeC
Confidence 34556677888999888876
No 179
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=21.56 E-value=5.1e+02 Score=25.72 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeeeccCC
Q 012942 281 AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDY 343 (453)
Q Consensus 281 ~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDf 343 (453)
..+..++++|+.+|=..+..+++ .+.++|+++||++......
T Consensus 40 ~d~~l~k~~G~N~iR~~h~p~~~---------------------~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 40 RDLELMKEMGFNAIRTHHYPPSP---------------------RFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHTT-SEEEETTS--SH---------------------HHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHhcCcceEEcccccCcH---------------------HHHHHHhhcCCEEEEeccc
Confidence 34566789999999987643332 4678999999999876655
No 180
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.50 E-value=3.3e+02 Score=28.12 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=32.5
Q ss_pred HhhCCCCccccCCCCCHHHHHHHHHHc----CCEEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 238 YLYDGGPAYSTGSEPLAEVAVQLIHRT----GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 238 yl~~g~p~yv~~~~~~~eeaI~~I~~a----GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
||+.|.|...+.. .+++.++.|+.. --+.+-++|... ..+.++.|.++|+.-|.+
T Consensus 56 yfGGGTPs~l~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~GvnRiSi 114 (350)
T PRK08446 56 FIGGGTPSTVSAK--FYEPIFEIISPYLSKDCEITTEANPNSA--TKAWLKGMKNLGVNRISF 114 (350)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCceEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 4555555433221 145566666553 136677888654 246778888888877665
No 181
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.50 E-value=8.1e+02 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCHHHHHHHHH----hcCCeEEe
Q 012942 93 LVERAHCNGVKVLALTDHDTMSGIPEAIETAR----RFGMKIIP 132 (453)
Q Consensus 93 lv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~----~~gi~vI~ 132 (453)
.++..+..|.++|.|||+-.-.......+.|. ..|+.+||
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~ 63 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVP 63 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeE
Confidence 35666778899999999755333333333332 34655543
No 182
>PLN02591 tryptophan synthase
Probab=21.45 E-value=1.5e+02 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeE
Q 012942 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (453)
Q Consensus 87 ~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~G 133 (453)
....++.++.|++.|++.+-|-|= .+.-..++.+.|++.||.+|+=
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEE
Confidence 356788999999999999999983 3334456677888889888763
No 183
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=21.28 E-value=4e+02 Score=26.84 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCHHHHHHHHH-----HcCCEEEEeCCCCCCC--hHHHHHHHHHcCCcEEEEeCCCC
Q 012942 252 PLAEVAVQLIH-----RTGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG 301 (453)
Q Consensus 252 ~~~eeaI~~I~-----~aGGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~ 301 (453)
++.+|=.++++ ..|.++|++|-+.... ..++.+...+.|.||+=+..|++
T Consensus 50 Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 45555444443 2455788887765332 12344555677888888877754
No 184
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=21.27 E-value=2e+02 Score=30.45 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=35.2
Q ss_pred EEEeCCCCC----CChHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCeeee
Q 012942 268 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 339 (453)
Q Consensus 268 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 339 (453)
++.|+|+.. ...+..++....+|+ -| .|+.+.+++....+ .+..+|++|+|.++.
T Consensus 129 pl~a~~ggvl~R~GhtEaavdL~~lAgl~p~avi~ei~~~dg~m~~~~-----------------~~~~fA~~h~l~~i~ 191 (369)
T PRK12485 129 PLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRP-----------------DLEVFAAKHGIKIGT 191 (369)
T ss_pred eEEecCCCCCCCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccChH-----------------HHHHHHHHcCCcEEE
Confidence 566666532 123334444444554 34 68877665543322 567889999999988
Q ss_pred ccC
Q 012942 340 GSD 342 (453)
Q Consensus 340 GSD 342 (453)
++|
T Consensus 192 i~~ 194 (369)
T PRK12485 192 IAD 194 (369)
T ss_pred HHH
Confidence 888
No 185
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.13 E-value=1.1e+02 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCC
Q 012942 88 LSPSKLVERAHCNGVKVLALTDHDT 112 (453)
Q Consensus 88 ~tp~elv~~A~~~Gl~~IAITDHdt 112 (453)
...-+.++.|+++|...|+||+...
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3455789999999999999999543
No 186
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.05 E-value=2.2e+02 Score=24.69 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCH-HHHHHHHHhcCCeEE
Q 012942 89 SPSKLVERAHCNGVKVLALTDHDTMSGI-PEAIETARRFGMKII 131 (453)
Q Consensus 89 tp~elv~~A~~~Gl~~IAITDHdt~~g~-~e~~~~a~~~gi~vI 131 (453)
...++++...+.|..+++|--......+ +++.++|++.++++|
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli 103 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLI 103 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEE
Confidence 4678999999999999999444333343 567889999998885
No 187
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.04 E-value=2e+02 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 90 p~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
.+..++.|++.|++.+.|-| -...-..++.+.+++.|+.+|+=+
T Consensus 108 ~e~F~~~~~~aGvdgviipD-LP~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPD-LPYEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred HHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEEE
No 188
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=21.03 E-value=3.3e+02 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHcCCEE---EEeCCCCCCChHHHHHHHHHcC
Q 012942 253 LAEVAVQLIHRTGGLA---VLAHPWALKNPAAIIRKLKDVG 290 (453)
Q Consensus 253 ~~eeaI~~I~~aGGva---VLAHP~~~~~~~~li~~l~~~G 290 (453)
...++++.++..|-.. +++|+++..+. +.+.++++.|
T Consensus 162 ~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~-~~~~~~~~~G 201 (293)
T cd00530 162 MGLEQLRILEEEGVDPSKVVIGHLDRNDDP-DYLLKIAALG 201 (293)
T ss_pred ccHHHHHHHHHcCCChhheEEeCCCCCCCH-HHHHHHHhCC
Confidence 6788999999886543 89999975543 4577777777
No 189
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.02 E-value=6.3e+02 Score=25.04 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcC
Q 012942 255 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYG 334 (453)
Q Consensus 255 eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~g 334 (453)
.|+.+.|.+++|++|..-+ ...++.|...|..-|-|..|+..+-. .+..+|-..+|
T Consensus 88 ~ei~~~ie~~~~v~vvTts------~Avv~aL~al~a~ri~vlTPY~~evn------------------~~e~ef~~~~G 143 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTS------TAVVEALNALGAQRISVLTPYIDEVN------------------QREIEFLEANG 143 (238)
T ss_pred HHHHHHHHhccCCceeech------HHHHHHHHhhCcceEEEeccchhhhh------------------hHHHHHHHhCC
Confidence 5788888899999988755 35778888889999999888754321 13456666777
Q ss_pred CeeeeccCCCCCCCCCCcccCCcc
Q 012942 335 LLKLGGSDYHGRGGHGESELGSVK 358 (453)
Q Consensus 335 Ll~tgGSDfHg~~~~~~~~lG~~~ 358 (453)
+-+. ||-+-+-.+..++|++.
T Consensus 144 feiv---~~~~Lgi~dn~eigr~~ 164 (238)
T COG3473 144 FEIV---DFKGLGITDNLEIGRQE 164 (238)
T ss_pred eEEE---EeeccCCcccchhcccC
Confidence 6554 56665555557788753
No 190
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.99 E-value=2.9e+02 Score=28.04 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=38.4
Q ss_pred HHcCC-EEEEeCCCCCCCh--HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhHHHHHHHHHHHHcCCee
Q 012942 262 HRTGG-LAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLK 337 (453)
Q Consensus 262 ~~aGG-vaVLAHP~~~~~~--~~li~~l~~~GldGIEV~~~~~~~~~~~~~~~~~n~~~l~~~~~~~~~~lA~~~gLl~ 337 (453)
..++| ++|+|+-+..... .++.+...+.|.|||=+..|++.....+- + -..|..+|..-+|.+
T Consensus 68 ~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~g---l----------~~hf~~ia~a~~lPv 133 (299)
T COG0329 68 EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEG---L----------YAHFKAIAEAVDLPV 133 (299)
T ss_pred HHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHH---H----------HHHHHHHHHhcCCCE
Confidence 45566 7799988765432 24555566789999999887654332110 1 125667777766643
No 191
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.99 E-value=4e+02 Score=26.89 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCHHHHHHHHH----H-cCCEEEEeCCCCCCChH---HHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhHH
Q 012942 252 PLAEVAVQLIH----R-TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLR 322 (453)
Q Consensus 252 ~~~eeaI~~I~----~-aGGvaVLAHP~~~~~~~---~li~~l~~~GldGIEV~~~~~~~-~~~~~~~~~~n~~~l~~~~ 322 (453)
++.+|=.++++ . .|.++|++|-+. +.. ++.+...+.|.||+-+..|++.. .+.. +.
T Consensus 57 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~----i~--------- 121 (303)
T PRK03620 57 LTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEG----LA--------- 121 (303)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH----HH---------
Confidence 55655444433 2 455899998863 333 44555678899999999886532 2211 11
Q ss_pred HHHHHHHHHHcCCeeeeccCCCCCCCCCCcccCCccCChhHHHHHh
Q 012942 323 QITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFL 368 (453)
Q Consensus 323 ~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~ 368 (453)
.+|.++|+..++.+.- ||.+ .+.+|.+++.+|.
T Consensus 122 -~~f~~va~~~~lpi~l---Yn~~---------g~~l~~~~l~~L~ 154 (303)
T PRK03620 122 -AHVEAVCKSTDLGVIV---YNRD---------NAVLTADTLARLA 154 (303)
T ss_pred -HHHHHHHHhCCCCEEE---EcCC---------CCCCCHHHHHHHH
Confidence 2788888887776555 4421 1356777777776
No 192
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.62 E-value=3.4e+02 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.507 Sum_probs=14.4
Q ss_pred EEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 267 LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 267 vaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+.+-++|... ..+.+..|+++|+..|.+
T Consensus 140 ~tie~np~~l--t~e~l~~l~~aG~~risi 167 (453)
T PRK09249 140 ISIEIDPREL--DLEMLDALRELGFNRLSL 167 (453)
T ss_pred EEEEecCCcC--CHHHHHHHHHcCCCEEEE
Confidence 4445555432 234555556666655554
No 193
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=20.47 E-value=1.4e+02 Score=29.17 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhcCCeEEeEE
Q 012942 84 SDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (453)
Q Consensus 84 SDG~~tp~elv~~A~~~Gl~~IAITDHdt~~g~~e~~~~a~~~gi~vI~Gi 134 (453)
.-|+.-=.+.+++|.+.|-+++ +|-+-+ ++..+.|..+++.++||+
T Consensus 68 GAGTVL~~~q~~~a~~aGa~fi-VsP~~~----~ev~~~a~~~~ip~~PG~ 113 (211)
T COG0800 68 GAGTVLNPEQARQAIAAGAQFI-VSPGLN----PEVAKAANRYGIPYIPGV 113 (211)
T ss_pred ccccccCHHHHHHHHHcCCCEE-ECCCCC----HHHHHHHHhCCCcccCCC
Confidence 3566555567899999999988 655433 678889999999999996
No 194
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.39 E-value=3.8e+02 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=16.5
Q ss_pred EEEEeCCCCCCChHHHHHHHHHcCCcEEEE
Q 012942 267 LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 296 (453)
Q Consensus 267 vaVLAHP~~~~~~~~li~~l~~~GldGIEV 296 (453)
+.+-++|... ..+.++.|.++|+.-|.+
T Consensus 88 itie~~p~~~--t~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 88 FTVEGNPGTF--TEEKLKILKSMGVNRLSI 115 (374)
T ss_pred EEEEeCCCcC--CHHHHHHHHHcCCCEEEE
Confidence 4556677543 245666777777665544
No 195
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.19 E-value=6e+02 Score=22.88 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccccHHHHHHHHhhCCCCccccCCCCCHHHHHHHHHHcCC
Q 012942 187 MILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 266 (453)
Q Consensus 187 iv~kL~~~Gi~i~~E~v~~~ag~~~~~gr~hia~aLv~~G~~~~~~~aF~~yl~~g~p~yv~~~~~~~eeaI~~I~~aGG 266 (453)
+.+.|.+.|+.++ +-|.-|+++|.+.+-..+..+.|......+.+ ....++..++++..++|=
T Consensus 8 ~~~~lk~~glr~T-------------~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~----islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLT-------------PQRLAVLELLLEADGHLSAEELYEELREEGPG----ISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcC-------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC----CCHhHHHHHHHHHHHCCC
Confidence 4455666777664 45666777777653334444444444432211 112344555555555554
Q ss_pred EEEEeC
Q 012942 267 LAVLAH 272 (453)
Q Consensus 267 vaVLAH 272 (453)
|-.++-
T Consensus 71 v~~~~~ 76 (145)
T COG0735 71 VHRLEF 76 (145)
T ss_pred EEEEEe
Confidence 444443
Done!