Query 012945
Match_columns 453
No_of_seqs 145 out of 1382
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 3.4E-95 7E-100 774.2 45.7 441 5-451 53-503 (545)
2 PRK12849 groEL chaperonin GroE 100.0 5E-95 1.1E-99 770.6 45.8 440 5-451 52-501 (542)
3 PRK00013 groEL chaperonin GroE 100.0 7.5E-95 1.6E-99 769.3 46.1 441 5-451 52-502 (542)
4 PRK14104 chaperonin GroEL; Pro 100.0 8E-95 1.7E-99 769.6 44.8 441 5-451 53-503 (546)
5 PTZ00114 Heat shock protein 60 100.0 2.3E-94 4.9E-99 768.8 46.0 441 5-451 64-518 (555)
6 cd03344 GroEL GroEL_like type 100.0 2.5E-94 5.4E-99 763.1 45.9 440 5-451 50-499 (520)
7 TIGR02348 GroEL chaperonin Gro 100.0 5.2E-94 1.1E-98 761.9 45.9 440 5-451 51-500 (524)
8 CHL00093 groEL chaperonin GroE 100.0 4.9E-94 1.1E-98 762.9 44.8 443 5-451 52-503 (529)
9 PRK12850 groEL chaperonin GroE 100.0 1.2E-93 2.6E-98 761.1 45.2 444 5-451 53-502 (544)
10 PRK12851 groEL chaperonin GroE 100.0 3.8E-93 8.1E-98 756.8 45.0 440 5-451 53-502 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1.3E-92 2.8E-97 757.1 44.0 440 5-451 108-559 (600)
12 KOG0356 Mitochondrial chaperon 100.0 6.3E-83 1.4E-87 644.4 31.7 438 7-449 68-513 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.2E-76 1.4E-80 619.4 31.8 380 5-451 54-461 (484)
14 COG0459 GroL Chaperonin GroEL 100.0 4.1E-77 8.9E-82 626.7 22.2 417 6-451 54-492 (524)
15 cd03343 cpn60 cpn60 chaperonin 100.0 5.3E-75 1.1E-79 618.3 37.0 386 5-451 57-495 (517)
16 TIGR02347 chap_CCT_zeta T-comp 100.0 5.8E-75 1.3E-79 617.2 37.1 386 5-451 58-504 (531)
17 TIGR02339 thermosome_arch ther 100.0 1.2E-74 2.7E-79 615.3 36.6 386 5-451 58-498 (519)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.9E-74 6.4E-79 613.1 36.7 391 5-451 50-504 (527)
19 TIGR02342 chap_CCT_delta T-com 100.0 4.5E-74 9.8E-79 610.1 35.4 392 5-451 51-495 (517)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.3E-74 1.6E-78 609.1 34.6 393 5-451 50-494 (515)
21 TIGR02340 chap_CCT_alpha T-com 100.0 1.3E-73 2.8E-78 609.0 36.5 391 5-451 54-508 (536)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.9E-73 4.1E-78 606.8 35.0 386 5-451 65-506 (526)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.3E-73 1.2E-77 603.1 37.0 389 5-451 58-498 (522)
24 TIGR02343 chap_CCT_epsi T-comp 100.0 4.2E-73 9E-78 603.9 35.2 386 5-451 69-510 (532)
25 TIGR02344 chap_CCT_gamma T-com 100.0 9.1E-73 2E-77 601.7 35.7 386 5-451 58-500 (525)
26 TIGR02345 chap_CCT_eta T-compl 100.0 8.2E-73 1.8E-77 601.1 35.0 389 5-451 59-498 (522)
27 TIGR02346 chap_CCT_theta T-com 100.0 5.9E-73 1.3E-77 602.6 31.1 385 5-451 60-498 (531)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.6E-72 1E-76 594.7 37.5 385 5-451 57-492 (517)
29 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.4E-72 1.6E-76 588.2 32.1 369 5-451 58-459 (480)
30 PTZ00212 T-complex protein 1 s 100.0 9.3E-72 2E-76 594.0 31.3 385 5-451 69-504 (533)
31 TIGR02341 chap_CCT_beta T-comp 100.0 4E-71 8.7E-76 587.1 32.8 385 5-451 58-493 (519)
32 KOG0361 Chaperonin complex com 100.0 1.8E-71 3.9E-76 537.7 22.4 387 6-450 63-500 (543)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.9E-70 8.5E-75 574.0 33.3 371 5-451 50-450 (472)
34 cd00309 chaperonin_type_I_II c 100.0 1E-69 2.3E-74 570.9 36.3 369 5-451 50-444 (464)
35 KOG0358 Chaperonin complex com 100.0 3.8E-67 8.3E-72 506.8 21.0 397 6-450 69-511 (534)
36 KOG0363 Chaperonin complex com 100.0 4.2E-66 9.1E-71 497.5 26.3 384 6-451 63-497 (527)
37 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 9E-65 2E-69 536.1 33.5 386 5-451 31-462 (485)
38 KOG0364 Chaperonin complex com 100.0 4.3E-60 9.2E-65 465.1 18.9 385 6-451 62-499 (527)
39 KOG0360 Chaperonin complex com 100.0 9.1E-59 2E-63 459.6 20.3 390 6-452 62-515 (545)
40 KOG0359 Chaperonin complex com 100.0 5.7E-57 1.2E-61 442.5 19.9 385 5-450 59-492 (520)
41 KOG0362 Chaperonin complex com 100.0 4.9E-55 1.1E-59 435.8 26.1 385 5-451 68-499 (537)
42 KOG0357 Chaperonin complex com 100.0 1.5E-51 3.3E-56 393.6 13.0 291 15-451 71-374 (400)
43 cd03333 chaperonin_like chaper 100.0 8.2E-28 1.8E-32 227.2 20.1 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 1.8E-25 3.9E-30 217.8 21.2 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 1.5E-07 3.2E-12 106.5 14.3 205 110-369 336-578 (1598)
46 PTZ00212 T-complex protein 1 s 49.6 36 0.00078 36.8 6.3 44 116-159 178-222 (533)
47 PRK13600 putative ribosomal pr 46.8 74 0.0016 25.5 6.1 55 188-252 20-74 (84)
48 smart00574 POX domain associat 42.9 46 0.001 29.3 4.6 42 336-377 84-126 (140)
49 COG0459 GroL Chaperonin GroEL 36.6 54 0.0012 35.5 5.1 90 186-291 259-355 (524)
50 TIGR02341 chap_CCT_beta T-comp 35.8 80 0.0017 34.1 6.3 43 116-159 167-211 (519)
51 COG3962 Acetolactate synthase 35.0 17 0.00037 38.3 0.9 38 343-380 217-254 (617)
52 PRK10343 RNA-binding protein Y 30.6 2.3E+02 0.005 23.4 6.7 67 187-255 8-76 (97)
53 TIGR02345 chap_CCT_eta T-compl 30.4 20 0.00044 38.7 0.6 61 195-256 245-314 (522)
54 PF01985 CRS1_YhbY: CRS1 / Yhb 28.0 1.7E+02 0.0037 23.1 5.5 67 188-256 7-75 (84)
55 PF04312 DUF460: Protein of un 26.3 92 0.002 27.4 3.8 42 187-257 66-107 (138)
56 PF00205 TPP_enzyme_M: Thiamin 25.0 1.3E+02 0.0028 25.7 4.6 60 188-273 3-63 (137)
57 PRK06683 hypothetical protein; 24.6 2.4E+02 0.0051 22.4 5.7 53 190-252 20-72 (82)
58 KOG2663 Acetolactate synthase, 24.0 74 0.0016 30.9 3.0 27 326-353 121-147 (309)
59 PF07526 POX: Associated with 23.3 99 0.0021 27.3 3.5 41 337-377 85-126 (140)
60 PRK11058 GTPase HflX; Provisio 22.6 2.7E+02 0.0059 29.3 7.3 55 238-293 26-87 (426)
61 TIGR00253 RNA_bind_YhbY putati 22.5 4.4E+02 0.0094 21.6 6.9 67 187-255 6-74 (95)
62 PRK13601 putative L7Ae-like ri 21.6 2.9E+02 0.0063 21.9 5.6 27 190-216 17-43 (82)
63 PRK13602 putative ribosomal pr 20.3 3.5E+02 0.0075 21.3 5.8 26 190-215 20-45 (82)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.4e-95 Score=774.22 Aligned_cols=441 Identities=36% Similarity=0.539 Sum_probs=422.7
Q ss_pred HHHHhhhcccc----CccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++. ||.+|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|++.
T Consensus 53 G~TIlk~i~~~~~~~~p~akll------~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQMV------REVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHHHH------HHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 57999999995 8889988 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++++++.|.++.|++..+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999988788999999999888999999999999999988899998888777899999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++|+.++++|+|+++|.+|+++++++|+|+.+.++|+||||++++|+++||++|+.|++++.++|++||+|+||++|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998876 8999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876688899999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ .+|++..++++|||+.+|+++||++.|||||+.+|..
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~ 503 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRT 503 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHH
Confidence 9999999999999999999 9998755678999999999999999999999999864
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5e-95 Score=770.61 Aligned_cols=440 Identities=39% Similarity=0.549 Sum_probs=422.3
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|+++|| +||++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|++.
T Consensus 52 GaTIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~ 125 (542)
T PRK12849 52 GVSIAKEIELEDPFENLGAQLV------KEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHcccCCccHhHHHHHH------HHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4689999999999 78887 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.++|.++|+||+++++.+++++++|+.+++.++.+.++.|++.+|++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK12849 126 VVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccc
Confidence 99999999999988889999999999989999999999999999888888999998888899999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|++++.++|++||+|+|+++|+
T Consensus 206 ~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~ 285 (542)
T PRK12849 206 DPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 285 (542)
T ss_pred cccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||.+|||++++++.+.+++++++++||+|++|+++++++++++++++++++..|+++|+++++++++ ++|+
T Consensus 286 ~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK12849 286 AMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQ 365 (542)
T ss_pred hHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999988787899999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
||++||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+++++|++|
T Consensus 366 eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~A 445 (542)
T PRK12849 366 ERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRA 445 (542)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999884489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ .+|++.. +++|||+.+|++.||++.|||||+.+|..
T Consensus 446 l~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~ 501 (542)
T PRK12849 446 LEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRS 501 (542)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHH
Confidence 9999999999999999999 9998754 57999999999999999999999999864
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.5e-95 Score=769.27 Aligned_cols=441 Identities=37% Similarity=0.528 Sum_probs=420.9
Q ss_pred HHHHhhhccccCcc----ccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p~----~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++.||+ +|++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.
T Consensus 52 G~tIlk~i~~~hp~~~~~akll------~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 125 (542)
T PRK00013 52 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEA 125 (542)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46899999999995 6666 6999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.++|.++|++|+++++.+++++++|+..+++++.|.|+.+++..+++++++|++|++||.+|||.+
T Consensus 126 ~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~ 205 (542)
T PRK00013 126 AVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVT 205 (542)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccc
Confidence 99999999999988889999999999889999999999999999888889987777778999999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
+++.++..++||+|+++|++|++++++.++++++.++|+||||++++|+++|+++|+.|+++++++|++||+|+||++|+
T Consensus 206 ~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 206 DPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred cccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.|.+++++++++||+|+.|+++++++++++++++++++..|+++|+++++++.+ ++|+
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 365 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQ 365 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999999999987787899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
||++||+|+++||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|++|+++...++++|+++++|++|
T Consensus 366 eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 445 (542)
T PRK00013 366 ERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRA 445 (542)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998833489999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ .+|++..+.++|||+.+|++.||++.|||||+.+|..
T Consensus 446 l~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~ 502 (542)
T PRK00013 446 LEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRS 502 (542)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHH
Confidence 9999999999999999999 9998754568999999999999999999999999864
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=8e-95 Score=769.64 Aligned_cols=441 Identities=38% Similarity=0.551 Sum_probs=423.7
Q ss_pred HHHHhhhcccc----CccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~----~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++. ||.++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 47899999999 9999998 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++|.+|.|.++.+++.++++++++|++|++||.||||++
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987788999999999989999999999999999989999998887777899999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
+++++..++++|+|+++|.+++++++++|+|+.+.++|+||||++++|+++||++|..|++++.++|+|||+|+||++|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.++.++++++++||+|++|+++++++++++|+++++.++.|+++|+++++++++ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999887 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
|||+||+|++|||+|||+|+++++|+||+++||+|++++++++|||||||++|+++|..|+++...++++++|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998855588999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ .+|++.++.++|||+.+|++.||++.||||||.||..
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~ 503 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRT 503 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHH
Confidence 9999999999999999999 9998755667999999999999999999999999864
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.3e-94 Score=768.82 Aligned_cols=441 Identities=39% Similarity=0.572 Sum_probs=421.1
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++.|| .++++ +++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.
T Consensus 64 G~TIlk~i~~~~p~~~~~a~ll------~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~ 137 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVGAQLI------RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKV 137 (555)
T ss_pred hHHHHHhcCcCCcchhHHHHHH------HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4689999999999 78877 5899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.+++|++++|++++++|++|++||.+|||++
T Consensus 138 ~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~ 217 (555)
T PTZ00114 138 VLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVT 217 (555)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccc
Confidence 99999999999988889999999999888999999999999999888899999999887779999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++|+.++++|+|+++|.+|++++++.++++.+.++|+||+|++++|+++|+++|..|++++.++|++||+|+||++++
T Consensus 218 ~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~ 297 (555)
T PTZ00114 218 NEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRK 297 (555)
T ss_pred ccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCC-CCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHH
Q 012945 240 AIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKL 314 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~-~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l 314 (453)
++|+|||++|||+++++. .+..++++++++||+|++|++++++++++++++++++|++|+++|+.+++.+++ ++|
T Consensus 298 ~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l 377 (555)
T PTZ00114 298 DILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKL 377 (555)
T ss_pred HHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999987 677778899999999999999999999999999999999999999999988775 899
Q ss_pred HHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcC---CChhHHHHHHH
Q 012945 315 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQI 391 (453)
Q Consensus 315 ~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~---~~~~e~~g~~~ 391 (453)
+|||+||+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||||++|+++|++|++++. .++++|+|+++
T Consensus 378 ~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~ 457 (555)
T PTZ00114 378 KERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKI 457 (555)
T ss_pred HHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998874 37899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 392 VQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 392 ~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|++||+.||++||+|||+|+.++ .+|++.+++++|||+.+|++.||++.|||||+.||..
T Consensus 458 ~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~ 518 (555)
T PTZ00114 458 VRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRS 518 (555)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHH
Confidence 99999999999999999999999 9997745678999999999999999999999999864
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-94 Score=763.14 Aligned_cols=440 Identities=40% Similarity=0.575 Sum_probs=421.6
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|+++|| .++++ +++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.
T Consensus 50 G~tIlk~i~~~hp~~~~~a~ll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~ 123 (520)
T cd03344 50 GVTVAKEIELEDPFENMGAQLV------KEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEA 123 (520)
T ss_pred HHHHHHHcccCCcchhHHHHHH------HHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 4689999999999 66666 6999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.++|.++|+||+++++.+++++++|+..++.++.|.+++|++..|++++++|++|++||.+|||.+
T Consensus 124 ~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~ 203 (520)
T cd03344 124 VVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVT 203 (520)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCcccc
Confidence 99999999999998899999999999989999999999999999888889999998887799999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
+|+++...++||+|+++|+++++++++.++++.+.++|+||||++++|+++|+++|..|++++.+++++||+|+++++++
T Consensus 204 ~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~ 283 (520)
T cd03344 204 DPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRK 283 (520)
T ss_pred CcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.+.+++++++++||+|++|++++++++++++++++++++.|+++|+++++++++ ++|+
T Consensus 284 ~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 363 (520)
T cd03344 284 AMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQ 363 (520)
T ss_pred HHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
||++||+|++|||+|||+|+.+++|+||+++||+|++|+++++|+|||||++|+++|++|++++..++++|+|+++|++|
T Consensus 364 eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 443 (520)
T cd03344 364 ERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRA 443 (520)
T ss_pred HHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ ++|++... ++|||+.+|++.||++.||||||.+|..
T Consensus 444 l~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~ 499 (520)
T cd03344 444 LEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRS 499 (520)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHH
Confidence 9999999999999999999 99987544 8999999999999999999999999864
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5.2e-94 Score=761.87 Aligned_cols=440 Identities=37% Similarity=0.539 Sum_probs=419.5
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++.|| .+|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|++.
T Consensus 51 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~ 124 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMGAQLV------KEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEA 124 (524)
T ss_pred HHHHHHHccCCChhhHHHHHHH------HHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 4699999999999 66666 6999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.+++.++|.+|+++++.+++++++|+.++++++.|.|+.|++..+++++++|++|++||.+|||.+
T Consensus 125 ~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~ 204 (524)
T TIGR02348 125 AVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVT 204 (524)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCccccc
Confidence 99999999999988889999999999988999999999999999888889988888878999999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++++..++||+|+++|++|++++++.++++.+.++|+||||++++|+++||++|+.|+++++++|++||+|+|+++|+
T Consensus 205 ~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~ 284 (524)
T TIGR02348 205 DAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRK 284 (524)
T ss_pred CccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++.+.+++++++++++||+|+.|+++++++++++++++++++..|++.|+++++++++ ++|+
T Consensus 285 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~ 364 (524)
T TIGR02348 285 AMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQ 364 (524)
T ss_pred hhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
|||+||+|+++||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|++|++....++++|+|+++|++|
T Consensus 365 eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 444 (524)
T TIGR02348 365 ERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRA 444 (524)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998333488999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ ++|++. +.++|||+.+|++.||++.|||||+.+|..
T Consensus 445 L~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~ 500 (524)
T TIGR02348 445 LEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRS 500 (524)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHH
Confidence 9999999999999999999 999875 335999999999999999999999999864
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4.9e-94 Score=762.88 Aligned_cols=443 Identities=33% Similarity=0.487 Sum_probs=421.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ +.+.+++|.+|++++||||||+||||++||++|+++++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999988 77788999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccccccc
Q 012945 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (453)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~ 163 (453)
|+++++|+++.++|.+||++|+++++.+++++++|+.+++++|.|.++.|++..+++++++|++|++||.+|||+++|++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999988899999999999899999999999999998888888887777788999999999999999999999999
Q ss_pred cceeecCeEEEecccccCCH-HHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHH
Q 012945 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (453)
Q Consensus 164 ~~~~l~~p~Ili~d~~i~~~-~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~L 242 (453)
|..+++||+|+++|++|+.. .+++++++.+.++|+||+|++++|+++++++|+.|+.+++++|++||+|+++++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 012945 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (453)
Q Consensus 243 e~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~eRl 318 (453)
+|||++|||++++++.|.+++++++++||+|++|+++++++++++ .++++.+..|+..++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999997 57789999999999999988877 9999999
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 012945 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNAL 396 (453)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~--~~~~e~~g~~~~a~AL 396 (453)
+||+|+++||+|||+|+++++|+||+++||+|++|+++++|+|||||++|+++|++|++++. .++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 4899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 397 ~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+.||++||+|||+|+.++ .++++. +.++|||+.+|+++||++.|||||+.||..
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~ 503 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRS 503 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHH
Confidence 999999999999999999 999765 458999999999999999999999999864
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-93 Score=761.06 Aligned_cols=444 Identities=36% Similarity=0.522 Sum_probs=420.4
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|+++||++++. ..+.+++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|++.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999995554 34447999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccccccc
Q 012945 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (453)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~ 163 (453)
|+++++|+++.++|.++|++|+++++.+++++++|+.+++++|.|.++.+....+++++++|++|++||.+|||++++++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888899999999998899999999999999998888888876666688999999999999999999998888
Q ss_pred cceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHH
Q 012945 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (453)
Q Consensus 164 ~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le 243 (453)
++.+++||+|+++|+++++.+++.++++.+.++|+||||++++|++++|++|+.|++++.+++++||+|+|+++|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012945 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (453)
Q Consensus 244 ~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~eRl~ 319 (453)
|||++|||++++++.+++++++++++||+|++|+++++++++++++++++++..|+++|+++++++.+ ++|+|||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998776 89999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 012945 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (453)
Q Consensus 320 ~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~AL~~~ 399 (453)
||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998445899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.+|..
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~ 502 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRT 502 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHH
Confidence 999999999999999 9997753 57999999999999999999999999864
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-93 Score=756.76 Aligned_cols=440 Identities=39% Similarity=0.547 Sum_probs=419.2
Q ss_pred HHHHhhhccccCc----cccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINT----TGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p----~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++.|| .||++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|++.
T Consensus 53 G~tIlk~i~~~hp~~~~~akll------~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~ 126 (541)
T PRK12851 53 GVTIAKEIELEDKFENMGAQMV------REVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAA 126 (541)
T ss_pred HHHHHHHccCCCchhhHHHHHH------HHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4799999999999 66676 6999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.++.+.+..+++++++|++|++||.+|||++
T Consensus 127 ~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~ 206 (541)
T PRK12851 127 VVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVT 206 (541)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCcccccccc
Confidence 99999999999988888999999999889999999999999999888888877666667899999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++|+.++++|+|+++|+++++.+++.++++.+.++|+||||++++|+++|+++|+.|++++.++|+|||+|+||+.|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 207 DADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred CCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.+++++++++++||+|++|++++++|+++++++++++++.|+++|+++++.+++ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQ 366 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999987777889999999999999999999999999999999999999999999988766 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~e~~g~~~~a~A 395 (453)
|||+||+|+++||+|||+|+++++|+||+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 367 ~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~A 446 (541)
T PRK12851 367 ERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRA 446 (541)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876688999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 396 L~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.||++||+|||+|+.++ .+|++.. .++|||+.+|+++||++.|||||+.+|..
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~ 502 (541)
T PRK12851 447 LEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRT 502 (541)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHH
Confidence 9999999999999999999 9998753 47999999999999999999999999864
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-92 Score=757.15 Aligned_cols=440 Identities=31% Similarity=0.482 Sum_probs=417.1
Q ss_pred HHHHhhhccccCcc----ccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTT----GTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (453)
Q Consensus 5 ~~~il~~~~~~~p~----~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~ 79 (453)
..+|||+|++.||+ |+++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||++|.+.
T Consensus 108 G~TIlk~i~~~hP~~~~gakll------~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~ 181 (600)
T PLN03167 108 GVTVAKEVELEDPVENIGAKLV------RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA 181 (600)
T ss_pred HHHHHHHcccCCchhhHHHHHH------HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46899999999997 6665 6999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccc
Q 012945 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 80 ~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~ 159 (453)
+++.|++++.|+++ ++|.++|++|+++++.|++++++|+.+++++|.|.+++|++.+|++++++|++|++||.||||++
T Consensus 182 ~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt 260 (600)
T PLN03167 182 LVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVT 260 (600)
T ss_pred HHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCccccc
Confidence 99999999999975 67999999999988999999999999999888899999999888889999999999999999999
Q ss_pred cccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchh
Q 012945 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (453)
Q Consensus 160 ~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~ 239 (453)
++++|..+++||+|+++|++|++++++.++++.+.++|+||||++++|++++|++|+.|++++.++|++||+|+||++++
T Consensus 261 ~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 261 DSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred CcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012945 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (453)
Q Consensus 240 ~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~ 315 (453)
++|+|||++|||++++++.+++++++++++||+|++|++.+++++++++.++++.+++|+.+|+.+++.+++ ++|+
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 999999999999999988788899999999999999999999999999989999999999999999877665 8999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcCC-ChhHH-HHHHHHH
Q 012945 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQ 393 (453)
Q Consensus 316 eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~~-~~~e~-~g~~~~a 393 (453)
+||++|+|++++|+|||+|+.+++|+||+++||+|++|+|+++|+|||||++|+++|+.|++++.. .+++| .|+++|+
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~ 500 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVK 500 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988754 45555 6699999
Q ss_pred HHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 394 NALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 394 ~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+||+.||++||+|||+|+.++ .+|++.++.++|||+.+|++.||++.|||||+.||..
T Consensus 501 ~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~ 559 (600)
T PLN03167 501 RALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRC 559 (600)
T ss_pred HHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHH
Confidence 999999999999999999999 9997656678999999999999999999999999864
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-83 Score=644.39 Aligned_cols=438 Identities=38% Similarity=0.554 Sum_probs=422.3
Q ss_pred HHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 012945 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (453)
Q Consensus 7 ~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L~ 85 (453)
++.+++++.++.-.+- +.+.++++...++++||||||+++||.+|..++.+-+. |.+|..|.+|+.+|++.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 5678899999988888 77889999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccccccccc
Q 012945 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (453)
Q Consensus 86 ~~s~~v~~~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~~~ 165 (453)
++++||+.++++.+||++|+++|..+++++.+|++++|++|.|+++.|+++.|++++++||.||+||+||||+++++...
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHH
Q 012945 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (453)
Q Consensus 166 ~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~l 245 (453)
++|++|++++++.+|+++++|.|.||...+..+||+|+++||+.++|++|+.|++++.++++|||+|+||+.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEeeCCCC-CCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhh
Q 012945 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (453)
Q Consensus 246 a~~tG~~i~~~~~~-~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s----~~l~eRl~~ 320 (453)
|.+||++++..+.+ ++++++++++||.|++|.++.+.+.++.|.+++++++.|+++++..++.+++ ++|+||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999888 7899999999999999999999999999999999999999999988887776 899999999
Q ss_pred hcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHH
Q 012945 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNALKMA 399 (453)
Q Consensus 321 l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~-~~~~e~~g~~~~a~AL~~~ 399 (453)
|+||+++|.|||.|+.|++|++++++||+|++++|+++|+|||||+++++|+..|.+... .+.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999998876 4788999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCcccchhhcceeeccCcC
Q 012945 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGLFFQIKKIKSKKAWCFP 449 (453)
Q Consensus 400 p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~ 449 (453)
.++||+|||.|+..+ .+++. ..+|||..+++|+||.+.||+|||.|-
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVv 513 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVV 513 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHH
Confidence 999999999999999 88873 289999999999999999999999874
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-76 Score=619.37 Aligned_cols=380 Identities=17% Similarity=0.243 Sum_probs=340.4
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ + ++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~--~----~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI--A----RAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH--H----HHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 3 899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCC-c-----eeee--cCCcccceeEEEeeE
Q 012945 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGM 146 (453)
Q Consensus 84 L~~~s~~v~---~~~~l~~va~~s~~~~------~~la~li~~A~~~vg~~~-~-----I~v~--~g~~~~d~~~lv~G~ 146 (453)
|++++.+++ +.+.+.++|++|++++ +.|++++++|+.++++++ . |++. .|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7889999999999864 789999999999998765 2 3332 46655 579999999
Q ss_pred EEecccCCCcccccccccceeecCeEEEecccccCCHHH-HHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcc
Q 012945 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~-i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (453)
+|+++|.+|+|+ ..++||+|+++|++++..+. +... .-.+|||++++|++.++++|..| +
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~------~ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKE------G 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHC------C
Confidence 999999999983 36899999999999886643 2111 11469999999999999999887 4
Q ss_pred eEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 012945 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (453)
Q Consensus 226 i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~~~g~~~~~~i~~r~~~l 302 (453)
|++||+ .++++|+|||++|||+++++ ++++++++||+|++| ++++++++++++++++
T Consensus 268 I~av~~-----~~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRR-----AKRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEe-----CCHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 899996 45678999999999999996 889999999999999 5788899999998765
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHhhcCC
Q 012945 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (453)
Q Consensus 303 ~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (453)
+.|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|+++|.+|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999999999999999 9999999999999999998764
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 382 -~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
++++|+++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+|+++||++.|||||+.+|..
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~ 461 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQ 461 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHH
Confidence 889999999999999999999999999999999 989753 4567999999999999999999999999864
No 14
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-77 Score=626.72 Aligned_cols=417 Identities=29% Similarity=0.399 Sum_probs=354.8
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
.+|||+|+++||.||++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998 4899999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CCceeeecCCcccceeEEEeeEEEecccCC
Q 012945 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (453)
Q Consensus 85 ~~~s~~v~~~~-----~l~~va~~s~~~~~~la~li~~A~~~vg~-----~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~ 154 (453)
+++++++++.+ ...++++.++++++.+++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998554 44444444555568999999999999998 777778877777789999999999999999
Q ss_pred CcccccccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCc
Q 012945 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (453)
Q Consensus 155 p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (453)
|||.++ .+++||+|+++|++|+..+..+| ++...+.+.||++++++..+++|..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 998653 47889999999999998888877 777777778888888888888888888888888888888888888
Q ss_pred ccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-cc--
Q 012945 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (453)
Q Consensus 235 ~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~-~s-- 311 (453)
+++++..|+|+++.||.++.+++.+ .....+|.|+.|.+.++.+....|.+. ...+++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 8888877777777777777765321 134456666666666555555544320 1112221 11
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHhh-cCCCh-hHH
Q 012945 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL-QTTNS-DQK 386 (453)
Q Consensus 312 --~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVpGGGa~e~~~s~~L~~~-~~~~~-~e~ 386 (453)
.++++|.++ .|++|||+|||+|+.+++|+||++|||||++|+++++| +|||||++|++++.+|++| ...++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 678888888 89999999999999999999999999999999999998 9999999999999999998 33355 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCeeEeCCCCcc-cchhhcceeeccCcCcc
Q 012945 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPARGLF-FQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 387 ~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~~~~-~dm~~~gi~ep~~~~~~ 451 (453)
+|+++|++||+.||++||+|||+||.++ .+|++... +++|||+.+|++ .||++.|||||+.||..
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~ 492 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRS 492 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHH
Confidence 9999999999999999999999999999 99998654 459999999999 88999999999999864
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-75 Score=618.33 Aligned_cols=386 Identities=18% Similarity=0.240 Sum_probs=348.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++|++++.++++ |+||..|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 578999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCCc---------eee--ecCCcccceeEEEe
Q 012945 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (453)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~~------~~la~li~~A~~~vg~~~~---------I~v--~~g~~~~d~~~lv~ 144 (453)
|++++.+++ +.+.+.++|++|++++ +.|++++++|+.++++++. |+| .+|++.. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999976532 677 4777775 799999
Q ss_pred eEEEecccCCCcccccccccceeecCeEEEecccc-------------cCCHHHHHHHH-----------HHHHHcCCCE
Q 012945 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQAS-----------LPCMMQGQSL 200 (453)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~-------------i~~~~~i~~~l-----------e~i~~~~~~l 200 (453)
|++|+++|.+|+|+ ..++||+|++++++ +++++++.+++ +.+.+.|.||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999984 36899999999988 46777666554 4788999999
Q ss_pred EEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEe-
Q 012945 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (453)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~- 279 (453)
||++++|+++++++|..+ +|++|++ .++++|+|||++|||+++++ +++++++.||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~-----v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999988743 5778885 45788999999999999986 888999999999999865
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHH
Q 012945 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (453)
Q Consensus 280 --~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~ 357 (453)
+++++++++++++. .|||+|||+|+.+++|+||+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999887653 489999999999999999999999999999999
Q ss_pred cC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012945 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (453)
Q Consensus 358 ~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (453)
+| +|||||++|+++|.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 98 9999999999999999998664 889999999999999999999999999999999 88874 245679999999
Q ss_pred CcccchhhcceeeccCcCcc
Q 012945 432 GLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 432 ~~~~dm~~~gi~ep~~~~~~ 451 (453)
|++.||++.|||||+.+|+.
T Consensus 476 g~~~d~~~~gI~dp~~vk~~ 495 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQ 495 (517)
T ss_pred CCccchhhcCceecHHHHHH
Confidence 99999999999999999864
No 16
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.8e-75 Score=617.18 Aligned_cols=386 Identities=17% Similarity=0.226 Sum_probs=339.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ + ++|++||+++||||||+++||++||++|.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll--~----~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI--A----RAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH--H----HHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 3 899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCCc------eee--ecCCcccceeEEEeeE
Q 012945 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI--FDRKALYNELNFVKGM 146 (453)
Q Consensus 84 L~~~s~~v---~~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~~~------I~v--~~g~~~~d~~~lv~G~ 146 (453)
|+++++++ .+.+.|.++|++++++ ++.|++++++|+..+++++. |++ ..|++ .+++++++|+
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s-~~ds~~v~Gi 210 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKS-ATDTTLIRGL 210 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCC-ccccEEEeeE
Confidence 99999764 4678899999998864 67899999999999987653 343 23444 4689999999
Q ss_pred EEecccCCCcccccccccceeecCeEEEecccccCCH-------------HH-----------HHHHHHHHHHcCC----
Q 012945 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ---- 198 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~-------------~~-----------i~~~le~i~~~~~---- 198 (453)
+|+++|.+|+|++ +++||+|+++|++++.. ++ +..+++.+.+.|+
T Consensus 211 v~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 211 VLDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999843 68999999999876532 22 3345666666541
Q ss_pred ---C---EEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCcee
Q 012945 199 ---S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS 272 (453)
Q Consensus 199 ---~---lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~ 272 (453)
+ ||+++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~ 347 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGW 347 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCcccccc
Confidence 3 8888899999999988874 58899864 4568999999999999986 88999999999
Q ss_pred eeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHH
Q 012945 273 CKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNAL 349 (453)
Q Consensus 273 ~~~v---~i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl 349 (453)
|++| ++++++++++++++++ ++|||+|||+|+.+++|+||+++||+
T Consensus 348 ~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 348 AGLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred ceEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999 6788899999988765 36999999999999999999999999
Q ss_pred HHHHHHHHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCC
Q 012945 350 HAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSS 423 (453)
Q Consensus 350 ~~~~~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~ 423 (453)
|++|+++++| +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~ 476 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGE 476 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCC
Confidence 9999999998 9999999999999999998764 899999999999999999999999999999999 888662 346
Q ss_pred CeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 424 DLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 424 ~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
++|||+.+|++.||++.|||||+.+|+.
T Consensus 477 ~~Gid~~~g~~~d~~~~gV~Dp~~vk~~ 504 (531)
T TIGR02347 477 VVGVDLETGEPIDPEIKGIWDNYRVKKQ 504 (531)
T ss_pred ceeeeccCCCccchhhccCEEcHHHHHH
Confidence 7999999999999999999999999874
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.2e-74 Score=615.29 Aligned_cols=386 Identities=18% Similarity=0.229 Sum_probs=346.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC--HHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---CCc-------eee--ecCCcccceeEE
Q 012945 84 LDCQARKITT--FEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (453)
Q Consensus 84 L~~~s~~v~~--~~~l~~va~~s~~~~-------~~la~li~~A~~~vg~---~~~-------I~v--~~g~~~~d~~~l 142 (453)
|+++++|+++ .+.|.++|+++++++ +.|++++++|+.++++ +|. |++ ..|++.. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 9999999863 678999999998754 7899999999999974 453 445 4677765 7999
Q ss_pred EeeEEEecccCCCcccccccccceeecCeEEEecccc-------------cCCHHHHHHHHH-----------HHHHcCC
Q 012945 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (453)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~-------------i~~~~~i~~~le-----------~i~~~~~ 198 (453)
++|++|+++|.+|.|+ ..++||+|++++++ +++++++.++++ .+++.|.
T Consensus 211 v~G~vi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGMP-------KRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCCc-------cccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998653 46899999999987 677777777766 7889999
Q ss_pred CEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE
Q 012945 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (453)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i 278 (453)
|||+++++|++.++++|..+ +|++|++ .++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRR-----VKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEec-----CCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999988743 5778884 45788999999999999996 78888889999999986
Q ss_pred ec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012945 279 TM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (453)
Q Consensus 279 ~~---~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~a 355 (453)
.+ ++++++++++++. .|||+|||+|+.+++|.||+++||++++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 8899999887653 5899999999999999999999999999999
Q ss_pred HHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeC
Q 012945 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (453)
Q Consensus 356 l~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~ 429 (453)
+++| +|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9998 9999999999999999998664 889999999999999999999999999999999 88974 2456899999
Q ss_pred CCCcccchhhcceeeccCcCcc
Q 012945 430 ARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 430 ~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
.+|++.||++.|||||+.+|+.
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~ 498 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQ 498 (519)
T ss_pred CCCCccchhhccceEcHHHHHH
Confidence 9999999999999999999864
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-74 Score=613.13 Aligned_cols=391 Identities=16% Similarity=0.191 Sum_probs=343.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhc---cCCc-------eee--ecCCcccceeEE
Q 012945 84 LDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (453)
Q Consensus 84 L~~-~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg---~~~~-------I~v--~~g~~~~d~~~l 142 (453)
|++ +++|++ +.+.|.++|++++++ .+.|++++++|+..++ .+|. |++ ..|++.. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 778899999998762 3789999999999985 2232 333 3676665 7999
Q ss_pred EeeEEEecccCCCcccccccccceeecCeEEEecccccCC-------------HH-----------HHHHHHHHHHHcCC
Q 012945 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SN-----------VIRQASLPCMMQGQ 198 (453)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~-------------~~-----------~i~~~le~i~~~~~ 198 (453)
++|++|+++|.+|.|+ ..++||+|++++++++. ++ .+.++++.+.+.|+
T Consensus 203 i~Givi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGMP-------TRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCCc-------ccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998653 47899999999987653 12 23467788889999
Q ss_pred CEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCC-CccCCCCCCceeeeEEE
Q 012945 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (453)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~-~~~~~~~~~LG~~~~v~ 277 (453)
||||++++|++.++++|..+ +|+++++ .++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~-----v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRR-----VKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999875 5789984 466889999999999999975443 22445667899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012945 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (453)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~ 354 (453)
+++++++++++++++ ++|||+|||+|+.+++|+||+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988654 5799999999999999999999999999999
Q ss_pred HHHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012945 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (453)
Q Consensus 355 al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~------- 421 (453)
++++| +|||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999998764 889999999999999999999999999999999 888762 2
Q ss_pred -CCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 422 -SSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 422 -~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+.++|||+.+|++.||++.|||||+.+|..
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~ 504 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIK 504 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHH
Confidence 347899999999999999999999999974
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.5e-74 Score=610.09 Aligned_cols=392 Identities=17% Similarity=0.220 Sum_probs=340.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---CCc-----eeee--cCCcccceeEEEee
Q 012945 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKG 145 (453)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~---~~~-----I~v~--~g~~~~d~~~lv~G 145 (453)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..++. ++. |++. .|++. +++++++|
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~G 203 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEG 203 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEee
Confidence 999999887 778899999999863 34679999999999975 233 3443 45444 67999999
Q ss_pred EEEecccCCC-cccccccccceeecCeEEEecccccC-------------C-----------HHHHHHHHHHHHHcCCCE
Q 012945 146 MKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKIS-------------N-----------SNVIRQASLPCMMQGQSL 200 (453)
Q Consensus 146 ~~~~~g~~~p-~~~~~~~~~~~~l~~p~Ili~d~~i~-------------~-----------~~~i~~~le~i~~~~~~l 200 (453)
++|+++|.++ .|+ ..++||+|+++++.++ + .+++.++++.+++.|+||
T Consensus 204 ivl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~l 276 (517)
T TIGR02342 204 LVFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNV 276 (517)
T ss_pred EEEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9999999983 442 2456777777665432 2 235678899999999999
Q ss_pred EEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE-E-
Q 012945 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A- 278 (453)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~-i- 278 (453)
|+++++|++++++.++.|.+.+ .+|++|++ .++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 277 vi~~~~I~~~~l~~l~~~~l~~-~~I~av~~-----v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 345 (517)
T TIGR02342 277 LLIQKSILRDAVNDLALHFLAK-MKIMVVKD-----IEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVT 345 (517)
T ss_pred EEECCCcccccccHHHHHHHhh-CCceEEec-----CCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEE
Confidence 9999999888888888777766 78999994 56788999999999999996 8888899999999998 3
Q ss_pred -ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHH
Q 012945 279 -TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (453)
Q Consensus 279 -~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~ 357 (453)
+++.++++.+++.+ |++|||+|||+|+.+++|+||+++||+++++++++
T Consensus 346 ~~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~ 395 (517)
T TIGR02342 346 TDGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVK 395 (517)
T ss_pred ECCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778776542 36799999999999999999999999999999999
Q ss_pred c-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCC
Q 012945 358 E-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (453)
Q Consensus 358 ~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (453)
+ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~ 475 (517)
T TIGR02342 396 KRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRK 475 (517)
T ss_pred CCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCC
Confidence 8 69999999999999999998764 889999999999999999999999999999999 99876 245689999999
Q ss_pred CcccchhhcceeeccCcCcc
Q 012945 432 GLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 432 ~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+++||++.|||||+.+|+.
T Consensus 476 g~i~d~~~~gI~dp~~vk~~ 495 (517)
T TIGR02342 476 GGITDMLEEEVLQPLLVTTS 495 (517)
T ss_pred CCccchhhccceEcHHHHHH
Confidence 99999999999999999874
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.3e-74 Score=609.10 Aligned_cols=393 Identities=17% Similarity=0.195 Sum_probs=341.9
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4889999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCCc----------eeeecCCcccceeEEEee
Q 012945 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (453)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~------~~~~la~li~~A~~~vg~~~~----------I~v~~g~~~~d~~~lv~G 145 (453)
|++++.|++ +.++|.++|++|++ +++.+++++++|+.++++++. |....|++.. ++++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~-ds~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE-DTELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh-hceeeee
Confidence 999999986 77889999999997 357899999999999987652 4444677765 5799999
Q ss_pred EEEecccCCCcccccccccceeecCeEEEeccccc-------------------CCH-----HHHHHHHHHHHHcCCCEE
Q 012945 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------------SNS-----NVIRQASLPCMMQGQSLL 201 (453)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i-------------------~~~-----~~i~~~le~i~~~~~~lv 201 (453)
++|+++|.+|++. |+ .+++|+++++++.+ ++. +++.++++.+.+.|.|||
T Consensus 203 iv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997531 11 24455555543322 111 457788999999999999
Q ss_pred EEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEe--
Q 012945 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (453)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~-- 279 (453)
|++++|++++++.++.|.+.+ .+|++|++ +++++|+|||++|||+++++ ++++++++||+|+.|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~-----~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKD-----IEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEec-----CCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999888877777777665 78999994 56788999999999999996 888888999999999854
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012945 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (453)
Q Consensus 280 -~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~ 358 (453)
+++++++.++..+ ++.|||+|||+|+.+++|+||+++||+|++++++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4568888876541 367999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012945 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (453)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (453)
| +|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 8 9999999999999999998664 889999999999999999999999999999999 989762 456899999999
Q ss_pred cccchhhcceeeccCcCcc
Q 012945 433 LFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 433 ~~~dm~~~gi~ep~~~~~~ 451 (453)
+++||++.|||||+.+|+.
T Consensus 476 ~~~d~~~~gI~dp~~vk~~ 494 (515)
T cd03338 476 AITNILEENVVQPLLVSTS 494 (515)
T ss_pred CccchhhcCceecHHHHHH
Confidence 9999999999999999874
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-73 Score=609.02 Aligned_cols=391 Identities=16% Similarity=0.197 Sum_probs=343.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCCc-------eee--ecCCcccceeEE
Q 012945 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (453)
Q Consensus 84 L~~~-s~~v~--~~~~l~~va~~s~~------~~~~la~li~~A~~~vg---~~~~-------I~v--~~g~~~~d~~~l 142 (453)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |++ ..|++. +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9975 88887 77889999999886 46789999999999986 2342 333 467777 68999
Q ss_pred EeeEEEecccCCCcccccccccceeecCeEEEecccccCCHH------------------------HHHHHHHHHHHcCC
Q 012945 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (453)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~------------------------~i~~~le~i~~~~~ 198 (453)
++|++|+++|.+|.|+ ..++||+|++++++++..+ .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m~-------~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQMP-------KRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCCc-------ceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998653 4789999999998764331 23466777888999
Q ss_pred CEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCC-CccCCCCCCceeeeEEE
Q 012945 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (453)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~-~~~~~~~~~LG~~~~v~ 277 (453)
+||+++++|++.++++|..+ +++++++ .++++|+|||++|||+++++..++ ..+++++++||+|+.|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~------~I~~i~r-----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEA------GAMGVRR-----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEec-----CCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 99999999999999988875 4789985 356789999999999999985444 33456778899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012945 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (453)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~ 354 (453)
+++++++++++++++ .+|||+|||+|+.+++|+||+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~-------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGR-------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988765 3699999999999999999999999999999
Q ss_pred HHHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012945 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (453)
Q Consensus 355 al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~------- 421 (453)
++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999988664 889999999999999999999999999999999 888661 1
Q ss_pred -CCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 422 -SSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 422 -~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+.++|||+.+|++.||++.|||||+.+|+.
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~ 508 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVK 508 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHH
Confidence 346999999999999999999999999974
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-73 Score=606.78 Aligned_cols=386 Identities=19% Similarity=0.210 Sum_probs=337.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------Cceeee--cCCcccceeEEEe
Q 012945 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (453)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~-------~~I~v~--~g~~~~d~~~lv~ 144 (453)
|+++++|++ +.+.|.++|++|+++ .+.|++++++|+..+... ..|++. .|++.. ++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-Hcceee
Confidence 999999885 467899999998874 357999999999888431 124443 677764 699999
Q ss_pred eEEEecccCCCcccccccccceeecCeEEEeccc-----------c--cCCHHH-----------HHHHHHHHHHcCCCE
Q 012945 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNV-----------IRQASLPCMMQGQSL 200 (453)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~-----------~--i~~~~~-----------i~~~le~i~~~~~~l 200 (453)
|++|+++|.+|+|+++ ++||+|+++++ + ++++++ +.++++.+.+.|+||
T Consensus 218 Givi~~~~~~~~m~~~-------~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPKE-------VKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCce-------ecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999753 44555555543 2 556655 677889999999999
Q ss_pred EEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE--
Q 012945 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (453)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i-- 278 (453)
||++++|++.++++|..|+ |.+|++++ +.+|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999998764 67999753 356999999999999986 88999999999999873
Q ss_pred -e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012945 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (453)
Q Consensus 279 -~--~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~a 355 (453)
+ .++++++++|+++ +.|||+|||+|+.+++|+||+++||++++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3678899988765 46899999999999999999999999999999
Q ss_pred HHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEe
Q 012945 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYN 428 (453)
Q Consensus 356 l~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~----~~~~~~G~d 428 (453)
+++| +|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9997 9999999999999999998664 889999999999999999999999999999999 98874 224579999
Q ss_pred CCCCcccchhhcceeeccCcCcc
Q 012945 429 PARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 429 ~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+.+|++.||++.|||||+.+|+.
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~ 506 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQ 506 (526)
T ss_pred cCCCccCchhhcCceecHHHHHH
Confidence 99999999999999999999864
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.3e-73 Score=603.12 Aligned_cols=389 Identities=15% Similarity=0.158 Sum_probs=346.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC---ceeee--cCCcccceeEEEeeE
Q 012945 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (453)
Q Consensus 84 L~~~s~~v~~------~~~l~~va~~s~~------~~~~la~li~~A~~~vg~~~---~I~v~--~g~~~~d~~~lv~G~ 146 (453)
|+++++|+++ .+.|.++|+++++ +++.|++++++|+.++++++ .|++. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 5669999999876 36789999999999998765 34443 576664 68999999
Q ss_pred EEecccCCCcccccccccceeecCeEEEeccccc-------------CCHHH-----------HHHHHHHHHHcCCCEEE
Q 012945 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i-------------~~~~~-----------i~~~le~i~~~~~~lvi 202 (453)
+|+++|.+|+|...|+ .++||+|+++++++ +++.+ +.+.++.+.+.|.++|+
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999866554 58999999999874 34433 56677888899999999
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Ee
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (453)
++++|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~------~I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADR------DIFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 9999999999988875 46788754 4578999999999999996 8889999999999998 67
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g 359 (453)
+++++++.+|..+ ..+||++||+|+.+++|.||+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7889999988654 358999999999999999999999999999999996
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCC
Q 012945 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARG 432 (453)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~-~~~G~d~~~~ 432 (453)
+|||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+|
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999998664 899999999999999999999999999999999 999762 34 5799999999
Q ss_pred cccchhhcceeeccCcCcc
Q 012945 433 LFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 433 ~~~dm~~~gi~ep~~~~~~ 451 (453)
++.||++.|||||+.+|+.
T Consensus 480 ~i~d~~~~gV~dp~~vk~~ 498 (522)
T cd03340 480 GIADNFEAFVWEPSLVKIN 498 (522)
T ss_pred cccchhhcCceEcHHHHHH
Confidence 9999999999999999874
No 24
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-73 Score=603.91 Aligned_cols=386 Identities=18% Similarity=0.182 Sum_probs=336.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++||++||+++.+|++ |+||+.|++||+.|++.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--C-----ceeee--cCCcccceeEEEe
Q 012945 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D-----LITIF--DRKALYNELNFVK 144 (453)
Q Consensus 84 L~~~s~~v~----~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~--~-----~I~v~--~g~~~~d~~~lv~ 144 (453)
|++++++++ +.+.|.++|++++++ .+.|++++++|+..+... + .|++. .|++.. ++++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-ds~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLE-DTKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcc-cceeEe
Confidence 999998875 357899999988864 346899999999888431 1 24443 677775 579999
Q ss_pred eEEEecccCCCcccccccccceeecCeEEEeccc-----------c--cCCHHHH-----------HHHHHHHHHcCCCE
Q 012945 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (453)
Q Consensus 145 G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~-----------~--i~~~~~i-----------~~~le~i~~~~~~l 200 (453)
|++|+++|.+|+|++. +++|+|+++++ + +++++++ .++++.+.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~~-------~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPKE-------VKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCee-------ecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 9999999999998653 45556655553 3 5666655 77899999999999
Q ss_pred EEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE--
Q 012945 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (453)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i-- 278 (453)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+.
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999998874 67898653 356999999999999996 88999999999999873
Q ss_pred -ec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012945 279 -TM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (453)
Q Consensus 279 -~~--~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~a 355 (453)
+. ++++++++++++ .+|||+|||+|+.+++|+||+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNS-------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 478899988765 35899999999999999999999999999999
Q ss_pred HHc-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCeeEe
Q 012945 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (453)
Q Consensus 356 l~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~----~~~~~G~d 428 (453)
+++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .++++. ++.++|||
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999998764 889999999999999999999999999999999 888751 25679999
Q ss_pred CCCCcccchhhcceeeccCcCcc
Q 012945 429 PARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 429 ~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+.+|+++||++.|||||+.+|..
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~ 510 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQ 510 (532)
T ss_pred CCCCccccchhccCeecHHHHHH
Confidence 99999999999999999999874
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.1e-73 Score=601.71 Aligned_cols=386 Identities=12% Similarity=0.137 Sum_probs=339.4
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+||++|++.||++|++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC-----------ceeee--cCCcccceeEE
Q 012945 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (453)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~~-----------~I~v~--~g~~~~d~~~l 142 (453)
|+++++|++ +.+.|.++|+++.++ ++.|++++++|+..+++++ .|+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~-dS~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIE-DSCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChH-hcCc
Confidence 999999886 567799999776543 4789999999999997643 14554 488775 4999
Q ss_pred EeeEEEecccCCCcccccccccceeecCeEEEecccccCC-------------HHHHHHHHH-----------HHHHcCC
Q 012945 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (453)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~-------------~~~i~~~le-----------~i~~~~~ 198 (453)
++|+.|++++.++.| +..++||+|++++++++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKM-------RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCC-------ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999877755 347899999999987654 456655544 6778887
Q ss_pred CEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCcee-eeEEE
Q 012945 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (453)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~-~~~v~ 277 (453)
+||++.+.+++.++++|..+ +|+++++ .++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~~------~I~av~~-----v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLKA------NISAIRR-----VRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhHC------CceEEec-----CCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 78888899999999877753 6889884 56788999999999999996 88888999999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012945 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (453)
Q Consensus 278 i---~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~ 354 (453)
+ +++++++++|++++ ..|||+|||+|+.+++|+||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~-------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDP-------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 56889999988765 3599999999999999999999999999999
Q ss_pred HHHc-CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeE
Q 012945 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (453)
Q Consensus 355 al~~-gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~-~~~~G~ 427 (453)
++++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++||
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9998 59999999999999999998664 889999999999999999999999999999999 999762 3 467999
Q ss_pred eCCCCcccchhhcceeeccCcCcc
Q 012945 428 NPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 428 d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
|+.+|++.||++.|||||+.+|..
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~ 500 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQ 500 (525)
T ss_pred ECCCCccccchhccceecHHHHHH
Confidence 999999999999999999999864
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.2e-73 Score=601.10 Aligned_cols=389 Identities=14% Similarity=0.133 Sum_probs=342.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC----ceeee--cCCcccceeEEEeeE
Q 012945 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITIF--DRKALYNELNFVKGM 146 (453)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~~s~~------~~~~la~li~~A~~~vg~~~----~I~v~--~g~~~~d~~~lv~G~ 146 (453)
|+++++|++ +.+.+.++|+++++ +++.|++++++|+.++++++ .|.+. .|++.. ++++++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecce
Confidence 999999987 45789999999876 46889999999999997642 23332 677765 57899999
Q ss_pred EEecccCCCcccccccccceeecCeEEEecccccC-------------CHHH-----------HHHHHHHHHHcCCCEEE
Q 012945 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~-------------~~~~-----------i~~~le~i~~~~~~lvi 202 (453)
+|+++|.+|+|.+.|+ .++||+|+++|++++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQPK----KFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCCc----eeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999876554 689999999998764 2333 34456667788999999
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE---e
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i---~ 279 (453)
+.++|++.++++|..+ +|+++++. .+++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v-----~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRV-----SDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecC-----CHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999988864 57888864 4567999999999999996 78888899999999874 4
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~- 358 (453)
+++++++.|++++ .+|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6778888887554 36999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012945 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGL 433 (453)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (453)
++|||||++|++++++|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999988664 889999999999999999999999999999999 999762 4567999999999
Q ss_pred ccchhhcceeeccCcCcc
Q 012945 434 FFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 434 ~~dm~~~gi~ep~~~~~~ 451 (453)
+.||++.|||||+.+|+.
T Consensus 481 i~d~~~~gI~dp~~vk~~ 498 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKN 498 (522)
T ss_pred ccchhhcCceEcHHHHHH
Confidence 999999999999999874
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.9e-73 Score=602.63 Aligned_cols=385 Identities=13% Similarity=0.156 Sum_probs=332.3
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCC--ceeee-------cCCcccceeEEEee
Q 012945 84 LDCQAR-KIT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LITIF-------DRKALYNELNFVKG 145 (453)
Q Consensus 84 L~~~s~-~v~---~~~~l~~va~~s~~-----~~~~la~li~~A~~~vg~~~--~I~v~-------~g~~~~d~~~lv~G 145 (453)
|+++++ +++ +.+.|.++|.++.+ +++.|++++++|+.++++++ .+.++ .|++.. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 764 36789999876663 37889999999999998654 33332 576664 7999999
Q ss_pred EEEecccCCCcccccccccceeecCeEEEeccccc-------------CC-----------HHHHHHHHHHHHHcCCCEE
Q 012945 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SN-----------SNVIRQASLPCMMQGQSLL 201 (453)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i-------------~~-----------~~~i~~~le~i~~~~~~lv 201 (453)
++|++++. + + | ..++||+|+++++++ ++ .+++.++++.+.+.|+|||
T Consensus 213 i~~~~~~~-~-~---~----k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAE-G-S---V----KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCC-C-C---c----eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999932 1 1 1 246677777666532 22 2356788999999999999
Q ss_pred EEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE---
Q 012945 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (453)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i--- 278 (453)
|++++|++.++++|.. .+|+||++|+++ +|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999997774 468999998755 5999999999999986 78888899999999975
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012945 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (453)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~ 358 (453)
++++++++.++.. .+++|||+|||+|+.+++|+||+++||+|++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888877542 2478999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCC
Q 012945 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARG 432 (453)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~ 432 (453)
| +|||||++|+++|.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+|
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999998664 889999999999999999999999999999999 998763 456799999999
Q ss_pred c--ccchhhcceeeccCcCcc
Q 012945 433 L--FFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 433 ~--~~dm~~~gi~ep~~~~~~ 451 (453)
+ ++||++.|||||+.+|..
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~ 498 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKW 498 (531)
T ss_pred CccccChhhcCceEcHHHHHH
Confidence 9 599999999999999864
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-72 Score=594.71 Aligned_cols=385 Identities=18% Similarity=0.230 Sum_probs=337.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccC---Cceeee--cCCcccceeEEEeeEE
Q 012945 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (453)
Q Consensus 84 L~~~s~~v~-----~~~~l~~va~~s~~------~~~~la~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~lv~G~~ 147 (453)
|+++++|++ +.+.|.++|+|+.+ +++.|++++++|+.+++.. ..|++. +|+++. ++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEE
Confidence 999999884 24679999986654 3578999999999998632 235554 577774 689999999
Q ss_pred EecccCCCcccccccccceeecCeEEEecccccC--------------CHHHH-----------HHHHHHHHHcCCCEEE
Q 012945 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVI-----------RQASLPCMMQGQSLLV 202 (453)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~--------------~~~~i-----------~~~le~i~~~~~~lvi 202 (453)
+++++.++ + +..++||+|+++|++++ +++++ .+.++.+.+.|.++++
T Consensus 210 ~~~~~~~~-~-------~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN-Q-------PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC-C-------CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 34789999999998654 45444 2346678889999999
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Ee
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (453)
+++.|++.++++|..+ +|++|++|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~~-----~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHADF-----DGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999988764 6899998853 35999999999999996 8889999999999986 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g 359 (453)
+++++++.+|+.+ +.|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7789999887643 569999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012945 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGL 433 (453)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~ 433 (453)
+|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999998765 899999999999999999999999999999999 88976 24668999999999
Q ss_pred ccchhhcceeeccCcCcc
Q 012945 434 FFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 434 ~~dm~~~gi~ep~~~~~~ 451 (453)
+.||++.|||||+.+|..
T Consensus 475 ~~d~~~~gI~dp~~vk~~ 492 (517)
T cd03336 475 VGDMKELGITESFKVKRQ 492 (517)
T ss_pred ccchhhcCceecHHHHHH
Confidence 999999999999999874
No 29
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-72 Score=588.19 Aligned_cols=369 Identities=12% Similarity=0.139 Sum_probs=329.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--C---------ceeee--cCCcccceeEE
Q 012945 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (453)
Q Consensus 84 L~~~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~--~---------~I~v~--~g~~~~d~~~l 142 (453)
|++++++++ +.+.+.++|+++.++ ++.|++++++|+..++++ + .|+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999987 778899999988873 457999999999999753 2 14454 477764 5999
Q ss_pred EeeEEEecccCCCcccccccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccC
Q 012945 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (453)
Q Consensus 143 v~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~ 222 (453)
++|++|++++.+|.| +.+++||+|++++++++. |||++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m-------~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKM-------RRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCC-------CcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 999999999988765 347899999999998775 8899999999999999876
Q ss_pred CcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceee-eEEE---EecceEEEEcCCCChhhHHHH
Q 012945 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC-KRVI---ATMDNVVIIGGSGELVDIQER 298 (453)
Q Consensus 223 ~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~-~~v~---i~~~~~~~~~g~~~~~~i~~r 298 (453)
+|++|++ .++++|+|||++|||+++++ ++++++++||+| +.++ +++++++++++|+++
T Consensus 263 --~I~~v~~-----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRR-----VRKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEe-----CCHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 5889995 56678999999999999996 788889999994 4544 355778999888765
Q ss_pred HHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHh
Q 012945 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (453)
Q Consensus 299 ~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~-gvVpGGGa~e~~~s~~L~~ 377 (453)
+.|||++||+|+.+++|.||+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999 5999999999999999998
Q ss_pred hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 378 ~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~-~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|||+.+|++.||++.|||||+.+|+.
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8764 899999999999999999999999999999999 999762 3 467999999999999999999999999864
No 30
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=9.3e-72 Score=594.04 Aligned_cols=385 Identities=18% Similarity=0.232 Sum_probs=337.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceeee--cCCcccceeEEEeeEE
Q 012945 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (453)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~lv~G~~ 147 (453)
|+++++|+++ .+.|.++|+|+.++ .+.|++++++|+..+... ..|++. +|+++. ++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEE
Confidence 9999999864 56899999866543 467999999999888432 124443 687774 689999999
Q ss_pred EecccCCCcccccccccceeecCeEEEeccccc--------------CCHHHHH-----------HHHHHHHHcCCCEEE
Q 012945 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVIR-----------QASLPCMMQGQSLLV 202 (453)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i--------------~~~~~i~-----------~~le~i~~~~~~lvi 202 (453)
+++++.++ + +.+++||+|+++|+++ ++++++. ..++.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3478999999999876 5554432 346668889999999
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Ee
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (453)
+++.|++.++++|..+ +|++||++ ++.+++|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999988764 58999964 3467999999999999996 8888889999999998 77
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g 359 (453)
+++++++.+|.. ++.|||+|||+|+.+++|+||+++||+|++|+++++|
T Consensus 358 ~~~~~~~~~~~~-------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAK-------------------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCC-------------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 889999988754 3679999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCc
Q 012945 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGL 433 (453)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~ 433 (453)
+|||||++|+++|.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+|+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999998764 889999999999999999999999999999999 98975 34568999999999
Q ss_pred ccchhhcceeeccCcCcc
Q 012945 434 FFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 434 ~~dm~~~gi~ep~~~~~~ 451 (453)
+.||++.|||||+.+|..
T Consensus 487 i~d~~~~gI~dp~~vk~~ 504 (533)
T PTZ00212 487 VGDMKELGITESYKVKLS 504 (533)
T ss_pred ccchhhccceecHHHHHH
Confidence 999999999999999864
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-71 Score=587.08 Aligned_cols=385 Identities=18% Similarity=0.212 Sum_probs=335.6
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||++|++ +++|++||+++||||||+|+||++||++|+++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 4899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---Cceeee--cCCcccceeEEEeeEE
Q 012945 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (453)
Q Consensus 84 L~~~s~~v~~-----~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~---~~I~v~--~g~~~~d~~~lv~G~~ 147 (453)
|+++++|+++ .++|.++|++++++ .+.|++++++|+..+... ..|++. +|+++ +++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~-~~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSL-NDSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCc-ccceEEeeEE
Confidence 9999999853 46899999888764 356899999999888431 236665 57777 4689999999
Q ss_pred EecccCCCcccccccccceeecCeEEEecccccCC--------------HHHH-----------HHHHHHHHHcCCCEEE
Q 012945 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPCMMQGQSLLV 202 (453)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~--------------~~~i-----------~~~le~i~~~~~~lvi 202 (453)
+++++.++ + +..++||+|+++|++++. ++++ ..+++.+.+.|.++++
T Consensus 211 ~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99986432 2 347899999999987642 3222 2336678889999999
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Ee
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (453)
+++.|++.++++|..+ +|+++++|++ ++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~~-----~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHADF-----EGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCCH-----HHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999988764 6899998863 46999999999999996 8888999999999886 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~- 358 (453)
+++++++.+|+++ +.|||+|||+|+.+++|+||+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999888653 57999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc
Q 012945 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGL 433 (453)
Q Consensus 359 gvVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~ 433 (453)
++|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 889999999999999999999999999999999 999762 4567999999999
Q ss_pred ccchhhcceeeccCcCcc
Q 012945 434 FFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 434 ~~dm~~~gi~ep~~~~~~ 451 (453)
+.||++.|||||+.+|..
T Consensus 476 i~d~~~~gI~dp~~vk~~ 493 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRA 493 (519)
T ss_pred ccchhhccceEcHHHHHH
Confidence 999999999999999874
No 32
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-71 Score=537.74 Aligned_cols=387 Identities=15% Similarity=0.145 Sum_probs=343.2
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
-+|||.|++.||+||.|| ++|++||.||||||||||+||+|+|+++..+++ |+||..|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktlV------dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTLV------DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHHH------HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999994 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCC---ceee--ecCCcccceeEEEeeEE
Q 012945 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMK 147 (453)
Q Consensus 85 ~~~s~~v~--~----~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~~---~I~v--~~g~~~~d~~~lv~G~~ 147 (453)
+++++.++ + ++.|++.|.|+.++ .++|+++++||+..++.+. .|-| .+|++++ +|.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~-dS~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAME-DSLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccc-hhhhcccee
Confidence 99998876 2 35688888777643 5789999999999987432 3434 4788886 588999999
Q ss_pred EecccCCCcccccccccceeecCeEEEecccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEE
Q 012945 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (453)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~-------------i~~~~~-----------i~~~le~i~~~~~~lvii 203 (453)
|.+.|....|..+|+ .+.||+|+++|.. +.++++ +.+.|++|..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999888876666 6999999999864 334443 346789999999999998
Q ss_pred ecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Eec
Q 012945 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (453)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (453)
.-.|.|.|.++|+...+ .||=| +.+++|.|+..+|||++.++ ..++.++.||.|..++ ++.
T Consensus 292 kLpIGD~ATQyFAdrdi-----FCAGR------V~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRDI-----FCAGR------VPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccCc-----eecCc------CCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 88999999998886542 24444 45689999999999999986 7889999999999996 789
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012945 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (453)
Q Consensus 281 ~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g- 359 (453)
++|.+|+||+.. +.||+++||+-++.++|.||++|||++++|.|+++.
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999764 469999999999999999999999999999999985
Q ss_pred CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012945 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGLF 434 (453)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~ 434 (453)
+|+|||+.||++|++|++|+.. .|++|+-+.+|++|||.||++||+|||+|...+ ++||. +|..|+|+|..++.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999986 999999999999999999999999999999999 99987 478899999999999
Q ss_pred cchhhcceeeccCcCc
Q 012945 435 FQIKKIKSKKAWCFPM 450 (453)
Q Consensus 435 ~dm~~~gi~ep~~~~~ 450 (453)
.||++.+||||..||.
T Consensus 485 ~dn~~~~VwEP~~VK~ 500 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKI 500 (543)
T ss_pred hhHHHhhccChHHHHH
Confidence 9999999999999985
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-70 Score=574.00 Aligned_cols=371 Identities=16% Similarity=0.195 Sum_probs=326.2
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--Cce-----eee--cCCcccceeEEEee
Q 012945 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLI-----TIF--DRKALYNELNFVKG 145 (453)
Q Consensus 84 L~~~s~~-v~---~~~~l~~va~~s~~-----~~~~la~li~~A~~~vg~~--~~I-----~v~--~g~~~~d~~~lv~G 145 (453)
|++++.+ ++ +.+.+.+++.++.+ +++.|++++++|+.+++++ |.+ ++. +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 53 45678888877753 3678999999999999865 443 332 677765 5799999
Q ss_pred EEEecccCCCcccccccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcc
Q 012945 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (453)
Q Consensus 146 ~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (453)
++|++.+.. +...++||+|++++++++. |+||||++++|+++++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999875321 2257899999999999886 889999999999999998653 46
Q ss_pred eEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 012945 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 302 (453)
Q Consensus 226 i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~---~~~~~~~g~~~~~~i~~r~~~l 302 (453)
|++|++|+ +++|+|||++|||+++++ ++++++++||+|++|++.+ ++++++.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999885 456999999999999986 7888889999999998654 889999887541
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHhhcCC
Q 012945 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (453)
Q Consensus 303 ~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVpGGGa~e~~~s~~L~~~~~~ 381 (453)
+++|||+|||+|+.+++|+||+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 3679999999999999999999999999999999998 9999999999999999998664
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC--cccchhhcceeeccCcCcc
Q 012945 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG--LFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 382 -~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~--~~~dm~~~gi~ep~~~~~~ 451 (453)
++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+.+| ++.||++.|||||+.+|+.
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~ 450 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKW 450 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHH
Confidence 789999999999999999999999999999999 88865 3456799999999 9999999999999999874
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1e-69 Score=570.89 Aligned_cols=369 Identities=25% Similarity=0.326 Sum_probs=331.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++|++++.++++ |+||+.|++||+.|++.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------CCceeee--cCCcccceeEEEeeEE
Q 012945 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (453)
Q Consensus 84 L~~~s~~--v~~~~~l~~va~~s~~------~~~~la~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~lv~G~~ 147 (453)
|++++++ +.+.+++.++|+++++ +++.+++++++|+.++++ .+.|+|+ .|++. .++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~-~ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSL-EDSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCc-ccceeeeeEE
Confidence 9999998 5678899999999987 578899999999999987 4667776 45555 4689999999
Q ss_pred EecccCCCcccccccccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceE
Q 012945 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (453)
Q Consensus 148 ~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~ 227 (453)
|+++|.+|+|+ ..++||+|++++++++. ++++.++|++.++++|.. .+|+
T Consensus 203 ~~~~~~~~~m~-------~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 203 FDKGYLSPYMP-------KRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EecCCCCCCCc-------eeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 99999999983 47899999999999886 566666799999998886 3689
Q ss_pred EEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHH
Q 012945 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRS 304 (453)
Q Consensus 228 avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~ 304 (453)
+|++ .++++|+|||++|||+++++ +++++++.||+|+.|++. +++++++.+++.+
T Consensus 253 ~v~~-----~~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRR-----VRKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEe-----CCHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 9996 45688999999999999986 788888999999999854 4567888776443
Q ss_pred HhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHhhcCC-C
Q 012945 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (453)
Q Consensus 305 ~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~-gvVpGGGa~e~~~s~~L~~~~~~-~ 382 (453)
+.|||+|||+|+.+++|+||+++||++++++++++ ++|||||++|++++++|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 56999999999999999999999999999999999 59999999999999999998774 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 383 ~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+++++++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+|++.||++.|||||+.+|+.
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~ 444 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQ 444 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHH
Confidence 99999999999999999999999999999999 888763 3457899999999999999999999999974
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-67 Score=506.83 Aligned_cols=397 Identities=18% Similarity=0.214 Sum_probs=335.9
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
-+|||.|.+.||+|||| | ++|++||.|+||||||||+|||+||+.+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL--v----elS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML--V----ELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH--H----HhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 48999999999999999 4 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-C----C---ceee--ecCCcccceeEEEeeE
Q 012945 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-N----D---LITI--FDRKALYNELNFVKGM 146 (453)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~-~----~---~I~v--~~g~~~~d~~~lv~G~ 146 (453)
++++.|++ |++.|.+-|+||.|+ +..++.+.++|+.++-. + . .|++ +.|++. |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99998886 778899999998864 55799999999998743 1 1 2444 367776 579999999
Q ss_pred EEecccCCCcccccccccc---e--eecCeE------EEecccc-----cC-CHHHHHHHHHHHHHcCCCEEEEecCcch
Q 012945 147 KLEWGLKSPYFFTHKNKKE---C--VLDGAL------VLIYDTK-----IS-NSNVIRQASLPCMMQGQSLLVVAEDVEN 209 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~---~--~l~~p~------Ili~d~~-----i~-~~~~i~~~le~i~~~~~~lvii~~~i~~ 209 (453)
+|++......-++..++.. + .++.|+ |++.|-. +. .-+++++++++|+++|+++++++++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 9987654222222222221 1 234443 3333311 11 1135788999999999999999999999
Q ss_pred hhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE----ecceEEE
Q 012945 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA----TMDNVVI 285 (453)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i----~~~~~~~ 285 (453)
++++.|+.|.+.. ++|++||. ..++++|++|+.+|++++++ ++.++++.||+++.++. ++.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikd-----ieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKD-----IEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcc-----ccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999999888766 79999994 55688999999999999996 89999999999999863 4557777
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCh
Q 012945 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (453)
Q Consensus 286 ~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVpGG 364 (453)
+.|+.++ |..++|++||+++.+++|.||++|||||++|+..+.. ++|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 7776553 5789999999999999999999999999999999875 99999
Q ss_pred hHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcccchhh
Q 012945 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGLFFQIKK 439 (453)
Q Consensus 365 Ga~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~~dm~~ 439 (453)
|+.|++++..|..++.. .|.+.|++++|++|||.+|++||+|||++|..+ .+||+ +|..++|+|+++|.+.||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999876 889999999999999999999999999999999 99987 46789999999999999999
Q ss_pred cceeeccCcCc
Q 012945 440 IKSKKAWCFPM 450 (453)
Q Consensus 440 ~gi~ep~~~~~ 450 (453)
+.|++|+.|--
T Consensus 501 e~VvQPllVs~ 511 (534)
T KOG0358|consen 501 ENVVQPLLVSI 511 (534)
T ss_pred HhcccceeeeH
Confidence 99999998743
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-66 Score=497.53 Aligned_cols=384 Identities=17% Similarity=0.232 Sum_probs=333.8
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
-+|||++.+.||+||+|| ++|+.||+|+|||||||+|||++||++|++|+. .+||+.|++||++|...+++.|
T Consensus 63 AtILksi~vDnpaAkvLv------~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVLV------DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhee------ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 489999999999999994 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC-C----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCC---ceee--ecCCcccceeEEEeeEEE
Q 012945 85 DCQARKIT-T----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (453)
Q Consensus 85 ~~~s~~v~-~----~~~l~~va~~s~~------~~~~la~li~~A~~~vg~~~---~I~v--~~g~~~~d~~~lv~G~~~ 148 (453)
.+.++..+ + +++|.++|+|... ..++|+++.++|+.++...+ .|.| ..|+++. ++.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~-dSfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLE-DSFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccc-ccccccccee
Confidence 99887654 2 4789999977653 25789999999999985433 2443 3677775 5778889888
Q ss_pred ecccCCCcccccccccceeecCeEEEeccccc--------------CCH-----------HHHHHHHHHHHHcCCCEEEE
Q 012945 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (453)
Q Consensus 149 ~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i--------------~~~-----------~~i~~~le~i~~~~~~lvii 203 (453)
++.+-- .+|+ .++||+||+.|..+ .+. +.+...+++|.+.|.|+.|-
T Consensus 216 ~K~igv----~qpk----riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV----NQPK----RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC----CCcc----cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 875321 1233 68899999887642 121 24667888999999999988
Q ss_pred ecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Eec
Q 012945 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (453)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~ 280 (453)
.+-|-+...++|.. .+|++|...+|.. +|||+..|||.++|+ ++.++..+||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 88888888887664 3689999988877 899999999999996 8999999999999875 799
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012945 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (453)
Q Consensus 281 ~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g- 359 (453)
+++.-|.|++-. -.|||++||+|++.+||.||++|||||++....++.
T Consensus 352 d~li~FSGv~~G-------------------------------eActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKLG-------------------------------EACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeecccccc-------------------------------cceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 999999998543 459999999999999999999999999999888885
Q ss_pred CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCcc
Q 012945 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGLF 434 (453)
Q Consensus 360 vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~~~ 434 (453)
+|.|||++||.+++.+.+++.. +|++..++++|++||..+|.+||.|||||+.++ .+|++ .|..++|+|+++|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999886 999999999999999999999999999999999 99988 467899999999999
Q ss_pred cchhhcceeeccCcCcc
Q 012945 435 FQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 435 ~dm~~~gi~ep~~~~~~ 451 (453)
.||.+.||+|++.+|+.
T Consensus 481 ~dm~~~Gi~es~~vK~~ 497 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQA 497 (527)
T ss_pred hhHHHhhhHHHHHHHHH
Confidence 99999999999999864
No 37
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=9e-65 Score=536.10 Aligned_cols=386 Identities=19% Similarity=0.304 Sum_probs=341.5
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
+.+||+++++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||..|++||+.|.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 568999999999999998 5899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhccC---Cceee--ecCCcccceeEEEeeEEEecc
Q 012945 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMKLEWG 151 (453)
Q Consensus 84 L~~~s~~v~~~-~~l~~va~~s~~~~------~~la~li~~A~~~vg~~---~~I~v--~~g~~~~d~~~lv~G~~~~~g 151 (453)
|+++++++++. +.++++|.++++++ +.|++++++|+..+..+ +.+.+ ..|+.. +++++++|++|+++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~ 183 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKG 183 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeecc
Confidence 99999998866 89999999999876 78999999999444211 12322 245555 57899999999999
Q ss_pred cCCCcccccccccceeecCeEEEecccccCCHHH-----------------------HHHHHHHHHHcCCCEEEEecCcc
Q 012945 152 LKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVE 208 (453)
Q Consensus 152 ~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~~~-----------------------i~~~le~i~~~~~~lvii~~~i~ 208 (453)
|.++.|+ ..+++|+|+++++.++..+. +.++++.+.+.|+|+||++++|+
T Consensus 184 ~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~ 256 (485)
T PF00118_consen 184 FSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSID 256 (485)
T ss_dssp BSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBT
T ss_pred ccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccc
Confidence 9988543 36799999999998776655 88999999999999999999999
Q ss_pred hhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEE---EEecceEEE
Q 012945 209 NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVI 285 (453)
Q Consensus 209 ~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v---~i~~~~~~~ 285 (453)
+.++++|..|+ |.+++. .++++|++||.+|||+++++ +++++++++|+|+.+ +++++++++
T Consensus 257 ~~~l~~l~~~~------I~~i~~-----v~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~ 320 (485)
T PF00118_consen 257 DEALQYLNKNG------ILVIRR-----VSKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIF 320 (485)
T ss_dssp HHHHHHHHHCT------HEEESS-----EHHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEE
T ss_pred cccchhhhhhh------hhcccc-----chHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhcccccccccc
Confidence 99999998764 567764 56788999999999999996 688888889999999 678899999
Q ss_pred EcC--CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 012945 286 IGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (453)
Q Consensus 286 ~~g--~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVp 362 (453)
+++ + +.++.+||+|||+|+.+++|+||+++||+++++++++++ +||
T Consensus 321 ~~~~~~-------------------------------~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 369 (485)
T PF00118_consen 321 IEGIGC-------------------------------LSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVP 369 (485)
T ss_dssp EEEHSE-------------------------------SSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred cccccc-------------------------------cccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceee
Confidence 884 3 245789999999999999999999999999999999975 999
Q ss_pred ChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCcccchh
Q 012945 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGLFFQIK 438 (453)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~~~~~dm~ 438 (453)
|||++|++++++|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++++. ..+.++|||+.+|++.||+
T Consensus 370 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~ 449 (485)
T PF00118_consen 370 GGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMK 449 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETT
T ss_pred cCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccc
Confidence 9999999999999888764 889999999999999999999999999999999 99977 3456999999999999999
Q ss_pred hcceeeccCcCcc
Q 012945 439 KIKSKKAWCFPMF 451 (453)
Q Consensus 439 ~~gi~ep~~~~~~ 451 (453)
+.|||||+.+|..
T Consensus 450 ~~gi~dp~~~k~~ 462 (485)
T PF00118_consen 450 EAGILDPLLVKIS 462 (485)
T ss_dssp TTTCEEEHHHHHH
T ss_pred cccchhhHHHHHH
Confidence 9999999998863
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-60 Score=465.14 Aligned_cols=385 Identities=12% Similarity=0.131 Sum_probs=331.0
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
+.||++|++.||+||.+ + ++|.+||+|||||||||++||+|+|.++..+++ |+||+.|++.|.+|++.++..+
T Consensus 62 ~ailrei~Vahpaaksm--i----el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM--I----ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH--h----hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998 4 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-Cc-e------eee--cCCcccceeEEEeeE
Q 012945 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-DL-I------TIF--DRKALYNELNFVKGM 146 (453)
Q Consensus 85 ~~~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~~-~~-I------~v~--~g~~~~d~~~lv~G~ 146 (453)
++++.|++ |...+.++...+... ++.++++..+|+++++.+ |. | +++ +|+.++ ++++++|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 98887776 666777777655431 456889999999999764 32 2 333 677665 68999999
Q ss_pred EEecccCCCcccccccccceeecCeEEEecccccCC------------------------HHHHHHHHHHHHHcCCCEEE
Q 012945 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (453)
Q Consensus 147 ~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~------------------------~~~i~~~le~i~~~~~~lvi 202 (453)
.+++...||.| +..++||+|+++|++++. .+++..+++.|..-.-.+|+
T Consensus 215 ~~nkdv~Hpkm-------rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKM-------RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHH-------HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 99999999865 357899999999987542 12345566666655545666
Q ss_pred EecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCce-eeeEEE---E
Q 012945 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG-SCKRVI---A 278 (453)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG-~~~~v~---i 278 (453)
..+++++.+.++|..++ +.+++ +.||.+..|+|++||++++++ ++|+...+.| .|+.++ +
T Consensus 288 tekG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 66799999999998764 55666 468889999999999999997 8999999999 477776 4
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012945 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (453)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~ 358 (453)
+++.|+||..|++|++ |||++||+|..+++|.+|.+.||+.++|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 6788999999999975 999999999999999999999999999999998
Q ss_pred C-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCC
Q 012945 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARG 432 (453)
Q Consensus 359 g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~~ 432 (453)
+ +||||||+||++|+.|.+.+.. ++-+++.|.+++.||+.+|++|++|+|.|+... ..+++ .+...+|+|.++|
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 7 9999999999999999986654 899999999999999999999999999999888 77766 3557899999999
Q ss_pred cccchhhcceeeccCcCcc
Q 012945 433 LFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 433 ~~~dm~~~gi~ep~~~~~~ 451 (453)
.++||.+.++|||+.+|..
T Consensus 481 ~iVDm~~~~iwep~~vK~Q 499 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQ 499 (527)
T ss_pred eEeeeeeccccchhhhhhh
Confidence 9999999999999999863
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-59 Score=459.63 Aligned_cols=390 Identities=16% Similarity=0.202 Sum_probs=334.8
Q ss_pred HHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012945 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (453)
Q Consensus 6 ~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L 84 (453)
-+||+.+.+.||++|+| | ++++.||+|+|||||+|+++|++||+++.+|+. ++||+.|+.||+.|...++++.
T Consensus 62 AtiL~~l~V~HPa~KiL--v----elaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i 135 (545)
T KOG0360|consen 62 ATILSLLEVEHPAAKVL--V----ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYI 135 (545)
T ss_pred HHHHHhhhhcchHHHHH--H----HHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHh
Confidence 48999999999999999 4 789999999999999999999999999999999 9999999999999999999999
Q ss_pred hc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---CCc-------eeee--cCCcccceeEEE
Q 012945 85 DC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-------ITIF--DRKALYNELNFV 143 (453)
Q Consensus 85 ~~-~s~~v~--~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~---~~~-------I~v~--~g~~~~d~~~lv 143 (453)
.+ ++.|++ ..+-|.++|.++.++ .++|++++++|+..+.. +|. +.|- .|.+. .++.++
T Consensus 136 ~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~-~eS~l~ 214 (545)
T KOG0360|consen 136 TEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQ-IESMLL 214 (545)
T ss_pred hccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccc-hhheee
Confidence 86 567776 467899999888753 57999999999987732 231 3332 55555 468999
Q ss_pred eeEEEecccCCCcccccccccceeecCeEEEecccc-------------cCCHHHH-----------HHHHHHHHHcCCC
Q 012945 144 KGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQS 199 (453)
Q Consensus 144 ~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d~~-------------i~~~~~i-----------~~~le~i~~~~~~ 199 (453)
.|+.++....+-.|+ ..+.+++|+++|.. |.+++++ ++-++++..+|++
T Consensus 215 ~GyaLnc~~asq~m~-------~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~gan 287 (545)
T KOG0360|consen 215 PGYALNCSVASQMMP-------LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGAN 287 (545)
T ss_pred cceeeeccHhhhccc-------cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCc
Confidence 999999988877664 35779999999974 3444432 2346678889999
Q ss_pred EEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCC-ccCCCCCCceeeeEEE-
Q 012945 200 LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI- 277 (453)
Q Consensus 200 lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~-~~~~~~~~LG~~~~v~- 277 (453)
+|+++++|||.++.+|+.. +++|||+ .++++|++||++||++++++...+. -+.+++.++|+|+.|.
T Consensus 288 vVLtt~gIddmc~K~~vea------gamAVrR-----~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvq 356 (545)
T KOG0360|consen 288 VVLTTGGIDDMCLKYFVEA------GAMAVRR-----CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQ 356 (545)
T ss_pred EEEEcCCccHHHHHHHHHc------chhhhHH-----HHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHH
Confidence 9999999999999998864 5789985 5778999999999999999754332 2356788999999984
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012945 278 --ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (453)
Q Consensus 278 --i~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~a 355 (453)
+++|+++++.|.+.. .|.|++||++++.+||++|++|||+|++|..
T Consensus 357 eri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 357 ERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred HhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 789999999885432 4899999999999999999999999999999
Q ss_pred HHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------C
Q 012945 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----------D 421 (453)
Q Consensus 356 l~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~-----------~ 421 (453)
++++ +|||||++|.+++-+|+.|+.. +.+||.++..|+.||..+|++|+-||+.|+.+. .+++.. .
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 9998 9999999999999999999986 789999999999999999999999999999999 888761 1
Q ss_pred CCCeeEeCCCCcccchhhcceeeccCcCccC
Q 012945 422 SSDLGYNPARGLFFQIKKIKSKKAWCFPMFR 452 (453)
Q Consensus 422 ~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~~ 452 (453)
..|+|.|..+|++.|.++.|++||..+|+.-
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvks 515 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKS 515 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhh
Confidence 3489999999999999999999999999753
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-57 Score=442.52 Aligned_cols=385 Identities=17% Similarity=0.222 Sum_probs=325.1
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
++++|++||++||++-++ + -+|..||+..||||||+|+|.+|||++|..++. |+||..|+.||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI-----a-kaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI-----A-KVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH-----H-HHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 468999999999999664 2 567999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-CCc---eeee---cCCcccceeEEEeeEEEec
Q 012945 84 LDCQARKITTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-NDL---ITIF---DRKALYNELNFVKGMKLEW 150 (453)
Q Consensus 84 L~~~s~~v~~~~~l~~va~~s~~~------~~~la~li~~A~~~vg~-~~~---I~v~---~g~~~~d~~~lv~G~~~~~ 150 (453)
|+..+.++ +++.|.++|.+|.+. -+.+.+++++|+..+.+ ++. ..++ .......+..+++|.++||
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdh 211 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDH 211 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccC
Confidence 99777776 478899999999875 23578889999988752 222 2222 2222334678999999999
Q ss_pred ccCCCcccccccccceeecCeEEEecccccCCH-------------H----------H-HHHHHHHHHHcC---CCEEEE
Q 012945 151 GLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------N----------V-IRQASLPCMMQG---QSLLVV 203 (453)
Q Consensus 151 g~~~p~~~~~~~~~~~~l~~p~Ili~d~~i~~~-------------~----------~-i~~~le~i~~~~---~~lvii 203 (453)
|..||.|++ .++|++||++|.++++. + + +.+-+++|.+-+ +.+|+|
T Consensus 212 g~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvi 284 (520)
T KOG0359|consen 212 GARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVI 284 (520)
T ss_pred CCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEe
Confidence 999999853 78999999999865431 1 1 112233444333 347766
Q ss_pred -ecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---Ee
Q 012945 204 -AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (453)
Q Consensus 204 -~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~ 279 (453)
+++|||..|..|+.+ +|+|+|+. ++.+||||.++|||..+.+ ++|+++++||+|+.|. ++
T Consensus 285 nqkGidp~sld~~a~~------gIlaLRRA-----KRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlG 348 (520)
T KOG0359|consen 285 NQKGIDPTSLDSLAKS------GILALRRA-----KRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLG 348 (520)
T ss_pred cccCCCCCcchhhhhc------chHHHHHH-----hhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeecc
Confidence 569999999988865 57899875 3457999999999999986 9999999999999996 68
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012945 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (453)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g 359 (453)
+++|||+++|++|. .|||+++|+|++.+...+++++|++++++++++++
T Consensus 349 EEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~ 397 (520)
T KOG0359|consen 349 EEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDK 397 (520)
T ss_pred ceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhc
Confidence 99999999999995 48999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-CCCCeeEeCCCCccc
Q 012945 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-DSSDLGYNPARGLFF 435 (453)
Q Consensus 360 -vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~-~~~~~G~d~~~~~~~ 435 (453)
++||+|+.|.+++.+|+..... +++.++|+++|++||..+|++|++|+|+|+.+. .+|... .....|+|..+|+..
T Consensus 398 ~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~ 477 (520)
T KOG0359|consen 398 CGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEEC 477 (520)
T ss_pred ccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCcc
Confidence 9999999999999999977765 899999999999999999999999999999888 777553 223569999999999
Q ss_pred chhhcceeeccCcCc
Q 012945 436 QIKKIKSKKAWCFPM 450 (453)
Q Consensus 436 dm~~~gi~ep~~~~~ 450 (453)
|-...||||.++||.
T Consensus 478 ~~~~~gi~Dny~v~~ 492 (520)
T KOG0359|consen 478 DPSRKGIYDNYSVKK 492 (520)
T ss_pred chhhccccchHHHHH
Confidence 999999999999985
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-55 Score=435.79 Aligned_cols=385 Identities=15% Similarity=0.166 Sum_probs=317.7
Q ss_pred HHHHhhhccccCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012945 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (453)
Q Consensus 5 ~~~il~~~~~~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~ 83 (453)
|-+||++++++||+||+| + .++++|+++.||||+.+|+||++||++|+++|. |++|.+|++||+.|.+.+++.
T Consensus 68 aatIlrelev~HPaakll--v----~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL--V----EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH--H----HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999 3 789999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCC-----ceeee--cCCcccceeEEEeeEEEec
Q 012945 84 LDCQAR-KITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND-----LITIF--DRKALYNELNFVKGMKLEW 150 (453)
Q Consensus 84 L~~~s~-~v~~~~~l~~va~~s~~-----~~~~la~li~~A~~~vg~~~-----~I~v~--~g~~~~d~~~lv~G~~~~~ 150 (453)
|.++.. .+.|.++...+++++++ +++++++++++|+-++.+.+ +|+|- .|++++ +|.++.||+|++
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~-~S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLE-DSCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcc-cceeeEEEEecc
Confidence 999864 22333333344544432 37899999999999987763 34442 677776 588999999998
Q ss_pred ccCCCcccccccccceeecCeEEEecccc-------------cCCHHHHH-----------HHHHHHHHcCCCEEEEecC
Q 012945 151 GLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIR-----------QASLPCMMQGQSLLVVAED 206 (453)
Q Consensus 151 g~~~p~~~~~~~~~~~~l~~p~Ili~d~~-------------i~~~~~i~-----------~~le~i~~~~~~lvii~~~ 206 (453)
.....- + .-...+|.++.++ |++++++. ...+.+..+|.++++..+.
T Consensus 221 ~~eG~v--~-------~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~ 291 (537)
T KOG0362|consen 221 DPEGEV--K-------SAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGK 291 (537)
T ss_pred ccCCcc--c-------ccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCc
Confidence 755321 1 2233444444443 56665544 4466778899999999999
Q ss_pred cchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEE---EecceE
Q 012945 207 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNV 283 (453)
Q Consensus 207 i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~---i~~~~~ 283 (453)
+++.+|+ +.|+ ++|+++|.++ +-+|.|||+.+||++.++ +..+.+..+|+|++|. ++++.+
T Consensus 292 V~em~Lh--flnk----y~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v 355 (537)
T KOG0362|consen 292 VDEMTLH--FLNK----YKIMVLQINS-----KFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLV 355 (537)
T ss_pred cchhhhh--hhcc----ccEEEEEecc-----HhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceE
Confidence 9999997 4444 7899999975 456899999999999986 8888889999999985 677777
Q ss_pred EEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcC
Q 012945 284 VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVP 362 (453)
Q Consensus 284 ~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVp 362 (453)
++|..... .+.++||++||+|+..+|+.||+++|++++.+...+++ ++|
T Consensus 356 ~vF~~e~~------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlp 405 (537)
T KOG0362|consen 356 VVFRWEST------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLP 405 (537)
T ss_pred EEEeeccC------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCcccc
Confidence 77654211 13578999999999999999999999999999999986 999
Q ss_pred ChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCC-cccch
Q 012945 363 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARG-LFFQI 437 (453)
Q Consensus 363 GGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~~-~~~dm 437 (453)
|+|++|+++++.|.++... +|..|+++..|++||+.+|++||+|||++..++ .+|.. ++..+.|+|+.-. ...|+
T Consensus 406 GagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~ 485 (537)
T KOG0362|consen 406 GAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDV 485 (537)
T ss_pred CCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccCh
Confidence 9999999999999999875 999999999999999999999999999999999 88876 3345678888766 58999
Q ss_pred hhcceeeccCcCcc
Q 012945 438 KKIKSKKAWCFPMF 451 (453)
Q Consensus 438 ~~~gi~ep~~~~~~ 451 (453)
.+.||||-+.+|.+
T Consensus 486 ~~~~i~D~~~~K~~ 499 (537)
T KOG0362|consen 486 REEGIWDTLAVKAQ 499 (537)
T ss_pred hhhchHHHHHHHHH
Confidence 99999999999875
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-51 Score=393.64 Aligned_cols=291 Identities=17% Similarity=0.167 Sum_probs=264.7
Q ss_pred cCccccccccchhhhhhhhhhcccccCCchhHHHhhHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 012945 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (453)
Q Consensus 15 ~~p~~~~~~~~~~~~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~-g~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~ 93 (453)
.||++|+++ .+|+.||.++|||||.+++||+.+++++.+++. |+||..|..||+.+...++++|++.+.+++
T Consensus 71 d~~IakLmv------~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLIV------ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHHH------HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 578888883 579999999999999999999999999999999 999999999999999999999999887764
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCCceeeecCCcccceeEEEeeEEEecccCCCcccccccccceeecCeEE
Q 012945 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (453)
Q Consensus 94 ~~~l~~va~~s~~~~~~la~li~~A~~~vg~~~~I~v~~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~~~~~l~~p~I 173 (453)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEE
Q 012945 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (453)
Q Consensus 174 li~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i 253 (453)
|..+++.++++|.+|+||+|+|||+|-++|..|++. |||..+ . -++|-||.+|||+|
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVG--G---pEiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVG--G---PEIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecC--C---cceEEEEeecCCee
Confidence 556788999999999999999999999999988744 788754 2 24889999999999
Q ss_pred eeCCCCCCccCCCCCCceeeeEEE-E----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEE
Q 012945 254 LTGGSGMNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~LG~~~~v~-i----~~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl~~l~g~~~tI 328 (453)
+.+ |+++++++||+|+.|. + ++|+..+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 996 9999999999999985 2 4789999999998765 699
Q ss_pred EeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 012945 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (453)
Q Consensus 329 ~vrG~t~~~l~E~er~i~DAl~~~~~al~~g-vVpGGGa~e~~~s~~L~~~~~~-~~~e~~g~~~~a~AL~~~p~~La~N 406 (453)
.|||+++.+++|.+|++|||||++||.+++. +|+|||++|+.||-.+.+-++. +|.|||++++|++||+.+|..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999985 9999999999999999888775 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHh----cCCCCeeEeCCCCcccchhhcceeeccCcCcc
Q 012945 407 AGVDGSVI-DKLLE----QDSSDLGYNPARGLFFQIKKIKSKKAWCFPMF 451 (453)
Q Consensus 407 aG~d~~~v-~~l~~----~~~~~~G~d~~~~~~~dm~~~gi~ep~~~~~~ 451 (453)
+|++|.+. +.+++ ..++++|+|+.-..-.||++.+|+||+..|+.
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~Kkq 374 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQ 374 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHH
Confidence 99999888 87766 25789999999888999999999999998864
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=8.2e-28 Score=227.21 Aligned_cols=192 Identities=26% Similarity=0.342 Sum_probs=163.3
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------CCceeee--cCCcccceeEEEeeEEEecccCCCcccccc
Q 012945 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (453)
Q Consensus 95 ~~l~~va~~s~~-----~~~~la~li~~A~~~vg~------~~~I~v~--~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~ 161 (453)
++|.++|+++.+ .++.+++++++|+..+++ .+.|.++ +|++. .++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~-~ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSL-EDSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcCh-hhceeEeeEEEeccccCCCCC---
Confidence 468899999887 577899999999999987 3456665 56555 468999999999999999883
Q ss_pred cccceeecCeEEEecccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhH
Q 012945 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (453)
Q Consensus 162 ~~~~~~l~~p~Ili~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~ 241 (453)
..++||+|++++++++. +|++.++|++.++++|..+ +|++|++ .++++
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 47899999999999876 6777778999999988763 5889986 45678
Q ss_pred HHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 012945 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (453)
Q Consensus 242 Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~~l~eRl 318 (453)
|+|||++|||+++++ ++++++++||+|++|++. +++++++.++..+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 788888999999999865 3457888876543
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012945 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (453)
Q Consensus 319 ~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~ 358 (453)
+.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=1.8e-25 Score=217.83 Aligned_cols=198 Identities=11% Similarity=0.153 Sum_probs=162.4
Q ss_pred ChhHHHHHHHHHHhhccC----------Cceeee--cCCcccceeEEEeeEEEecccCCCcccccccccceeecCeEEEe
Q 012945 108 DGEIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (453)
Q Consensus 108 ~~~la~li~~A~~~vg~~----------~~I~v~--~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili 175 (453)
.+.|++++++|+..+.++ ..|+|. +|+++ +++++++|+++++++.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~-~dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSP-SDSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCH-HHcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 467999999999988532 125554 67777 469999999999998887664 3689999999
Q ss_pred cccccCCH-----------------HHHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccch
Q 012945 176 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (453)
Q Consensus 176 ~d~~i~~~-----------------~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r 238 (453)
++++++.. +.+..+++++...|.++|++.++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876431 13456788899999999999999999999988864 57899964 4
Q ss_pred hhHHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 012945 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (453)
Q Consensus 239 ~~~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i---~~-----~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~ 310 (453)
+++|+|||++|||+++++. .+.+++++||+|+.|++ ++ +++++|.+|..+
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~------------------ 218 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE------------------ 218 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC------------------
Confidence 5789999999999999861 34678889999999975 33 478999988654
Q ss_pred cHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012945 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (453)
Q Consensus 311 s~~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~~al~~g 359 (453)
+.|||+|||+|+++++|.||+++||+++++++..+.
T Consensus 219 -------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 358999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.5e-07 Score=106.54 Aligned_cols=205 Identities=11% Similarity=0.170 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhhccC----------Cceeee--cCCcccceeEEEeeEEEecccCCCcccccccccceeecCeEEEecc
Q 012945 110 EIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYD 177 (453)
Q Consensus 110 ~la~li~~A~~~vg~~----------~~I~v~--~g~~~~d~~~lv~G~~~~~g~~~p~~~~~~~~~~~~l~~p~Ili~d 177 (453)
.+..++.+|...+.++ +.+.|+ .+|.. .+++++.|+++.+...+-.| ..++++|+|++..
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M-------~~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRM-------ATKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhh-------hhhccCCceEEEe
Confidence 3556667777666442 124444 55554 57999999999987666544 4478889999887
Q ss_pred cccC---------CHH--------HHHHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhh
Q 012945 178 TKIS---------NSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 240 (453)
Q Consensus 178 ~~i~---------~~~--------~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~ 240 (453)
+.+. +.+ .+...+..|....-+++++.+++++.|..+|... ++ ..+= +.+..
T Consensus 408 g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I---~lvl-----nvK~s 476 (1598)
T KOG0230|consen 408 GPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GI---SLVL-----NVKRS 476 (1598)
T ss_pred cchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---Ce---EEEE-----eccHH
Confidence 6432 222 2334445555455568889999999999877642 22 2221 34556
Q ss_pred HHHHHHHHhCCEEeeCCCCCCccCCCCCCceeeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 012945 241 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM--------DNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 312 (453)
Q Consensus 241 ~Le~la~~tG~~i~~~~~~~~~~~~~~~~LG~~~~v~i~~--------~~~~~~~g~~~~~~i~~r~~~l~~~~~~~~s~ 312 (453)
.|+||+++|||.|+.+ ++.++...||+|+.+++.+ ....|++||..+.
T Consensus 477 ~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l------------------- 532 (1598)
T KOG0230|consen 477 LLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL------------------- 532 (1598)
T ss_pred HHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-------------------
Confidence 7999999999999975 7778889999999987531 2246788887653
Q ss_pred HHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHH-HHHHcCCcCChhHHHH
Q 012945 313 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVALL 369 (453)
Q Consensus 313 ~l~eRl~~l~g~~~tI~vrG~t~~~l~E~er~i~DAl~~~~-~al~~gvVpGGGa~e~ 369 (453)
-|||++||++..++.+.++-+.=++-++- .+++.-|+.-=|+...
T Consensus 533 ------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 ------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 28999999999999999998888777775 4466567766666443
No 46
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=49.58 E-value=36 Score=36.85 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=26.4
Q ss_pred HHHHHhhccCCceeeecCCcccc-eeEEEeeEEEecccCCCcccc
Q 012945 116 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFT 159 (453)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d-~~~lv~G~~~~~g~~~p~~~~ 159 (453)
.+++..++.++.+.++++....+ .+.-+.|..++.+|+.|+|+.
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~ 222 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFIL 222 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEE
Confidence 45555555555556655443332 345555888888888888754
No 47
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=46.80 E-value=74 Score=25.52 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCE
Q 012945 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (453)
Q Consensus 188 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~ 252 (453)
+-++.+.+....+|++++|+++.....+..--.+..+++ +..|+ .++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~--v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV--SFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECC--------HHHHHHHhCCC
Confidence 345556556678999999999997765543212222333 33332 56788888753
No 48
>smart00574 POX domain associated with HOX domains.
Probab=42.85 E-value=46 Score=29.29 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHh
Q 012945 336 AEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (453)
Q Consensus 336 ~~l~E~er~i~DAl~~~~~al~~-gvVpGGGa~e~~~s~~L~~ 377 (453)
..++|++++++--..-++..+.. .-|+|+|++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 36778888877777777666665 3789999988888777654
No 49
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=36.57 E-value=54 Score=35.48 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCC-EEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHH-HHHHHHhCCEEeeCCCCCCcc
Q 012945 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (453)
Q Consensus 186 i~~~le~i~~~~~~-lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~L-e~la~~tG~~i~~~~~~~~~~ 263 (453)
+..++..+.+.|.+ +++++++|+|.++++|..+ .|++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 34556667788999 7788899999999988865 478888653 4557 79999999999996 89
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCCC
Q 012945 264 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 291 (453)
Q Consensus 264 ~~~~~~LG~--~~~v~i---~~~~~~~~~g~~~ 291 (453)
+.++..+|. |+.|+. ++++++++.++.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 999874 4556667766543
No 50
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=35.80 E-value=80 Score=34.08 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=26.0
Q ss_pred HHHHHhhccCCceeeecCCcccceeEEE--eeEEEecccCCCcccc
Q 012945 116 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFT 159 (453)
Q Consensus 116 ~~A~~~vg~~~~I~v~~g~~~~d~~~lv--~G~~~~~g~~~p~~~~ 159 (453)
.+++..++.++.+.++.+... +.+++. .|..++.+|+.|+|+.
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~ 211 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLL 211 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEE
Confidence 444555555555555544433 346666 4888888888887754
No 51
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=34.99 E-value=17 Score=38.30 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHhhcC
Q 012945 343 LKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 380 (453)
Q Consensus 343 r~i~DAl~~~~~al~~gvVpGGGa~e~~~s~~L~~~~~ 380 (453)
|.+.||+..+|++.+-=+|.|||+-+-.+...|..|+.
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 56889999999887655999999999998888887753
No 52
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=30.57 E-value=2.3e+02 Score=23.39 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhhhhHHhhhccCCcceEEEEccC-cccchhhHHHHHHHHhCCEEee
Q 012945 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLT 255 (453)
Q Consensus 187 ~~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~~~~r~~~Le~la~~tG~~i~~ 255 (453)
..+|......=.|+|.+.+ ++++.++..+-..-... ..+=||... ..+.+++..+.||..|||.++.
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~h--ELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH--ELIKVKIATEDRETKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHC--CcEEEEecCCChhHHHHHHHHHHHHHCCEEEe
Confidence 3566666556679998875 89998887554321111 223344322 2344667889999999999885
No 53
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=30.44 E-value=20 Score=38.65 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=48.7
Q ss_pred HcCCCEEEEecCcch-----hhhhhHHhhhccCC----cceEEEEccCcccchhhHHHHHHHHhCCEEeeC
Q 012945 195 MQGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (453)
Q Consensus 195 ~~~~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~ 256 (453)
+...|+.|..+++++ +++..+..|+.+++ .++++++.| +++.+...|++....++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 344588888999988 88888888887664 378888888 99999899999988888876543
No 54
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=28.05 E-value=1.7e+02 Score=23.14 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEEec-CcchhhhhhHHhhhccCCcceEEEEccC-cccchhhHHHHHHHHhCCEEeeC
Q 012945 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (453)
Q Consensus 188 ~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~~~~r~~~Le~la~~tG~~i~~~ 256 (453)
..|......-.|++.+.+ ++++..+..+-..-.. ..++=||... ..+.+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555555679988876 7888887755432211 1345566544 23335677889999999998863
No 55
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=26.33 E-value=92 Score=27.42 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCC
Q 012945 187 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 257 (453)
Q Consensus 187 ~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~ 257 (453)
-+.++.|.+.|+|+||. -|+.+.. +..+.|+.++||.++.+.
T Consensus 66 ~evi~~I~~~G~PviVA-tDV~p~P----------------------------~~V~Kia~~f~A~ly~P~ 107 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIVA-TDVSPPP----------------------------ETVKKIARSFNAVLYTPE 107 (138)
T ss_pred HHHHHHHHHcCCEEEEE-ecCCCCc----------------------------HHHHHHHHHhCCcccCCC
Confidence 35577888999998863 3443322 346789999999999864
No 56
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=24.97 E-value=1.3e+02 Score=25.75 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCEEeeCCCCC-CccCCC
Q 012945 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFV 266 (453)
Q Consensus 188 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~~~~~~-~~~~~~ 266 (453)
...+.+.++++|++++..+..... -.+.+..++..+|+.++....+- .+++-.
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~--------------------------a~~~l~~lae~~~~Pv~~t~~~kg~i~~~h 56 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSG--------------------------AAEELRELAEKLGIPVATTPMGKGVIPEDH 56 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTT--------------------------CHHHHHHHHHHHTSEEEEEGGGTTSSTTTS
T ss_pred HHHHHHHhCCCEEEEEcCCcChhh--------------------------HHHHHHHHHHHHCCCEEecCccccccCCCC
Confidence 345666678899998765432110 11468899999999998764332 233334
Q ss_pred CCCceee
Q 012945 267 PLKLGSC 273 (453)
Q Consensus 267 ~~~LG~~ 273 (453)
+.++|..
T Consensus 57 p~~~G~~ 63 (137)
T PF00205_consen 57 PLFLGYL 63 (137)
T ss_dssp TTEEEES
T ss_pred chhcccC
Confidence 5556643
No 57
>PRK06683 hypothetical protein; Provisional
Probab=24.64 E-value=2.4e+02 Score=22.37 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=31.2
Q ss_pred HHHHHHcCCCEEEEecCcchhhhhhHHhhhccCCcceEEEEccCcccchhhHHHHHHHHhCCE
Q 012945 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (453)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~Le~la~~tG~~ 252 (453)
++.+++....+||+++|.++.....+..--.. .+|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~--~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ--HNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh--cCCCEEEEC--------CHHHHHHHhCCc
Confidence 45555555689999999999876654321111 223333332 246788888853
No 58
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=24.04 E-value=74 Score=30.94 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=24.8
Q ss_pred EEEEeccCcHhHHHHHHHHHHHHHHHHH
Q 012945 326 AVLKVCGHGKAEVREKKLKITNALHAVQ 353 (453)
Q Consensus 326 ~tI~vrG~t~~~l~E~er~i~DAl~~~~ 353 (453)
-||+|+| ++.++++.+|.++|-+++.+
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999999 78899999999999999985
No 59
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=23.32 E-value=99 Score=27.30 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHh
Q 012945 337 EVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (453)
Q Consensus 337 ~l~E~er~i~DAl~~~~~al~~-gvVpGGGa~e~~~s~~L~~ 377 (453)
.|+|++++++--..=++..... .-|.|.|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 5677777766666666655554 3788999988888877754
No 60
>PRK11058 GTPase HflX; Provisional
Probab=22.63 E-value=2.7e+02 Score=29.26 Aligned_cols=55 Identities=22% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHhCCEEeeCCCCCCccCCC-CCCceeeeEEE------EecceEEEEcCCCChh
Q 012945 238 RKAIMEDLAILTGGQVLTGGSGMNSTYFV-PLKLGSCKRVI------ATMDNVVIIGGSGELV 293 (453)
Q Consensus 238 r~~~Le~la~~tG~~i~~~~~~~~~~~~~-~~~LG~~~~v~------i~~~~~~~~~g~~~~~ 293 (453)
.-++|+.||.++|..++....- +.+.++ ..++|+-+--+ -.+-.+++|.+.=.|.
T Consensus 26 ~~~El~~L~~~~g~~v~~~~~q-~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~ 87 (426)
T PRK11058 26 DLQEFESLVSSAGVEALQVITG-SRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPA 87 (426)
T ss_pred hHHHHHHHHHHCCCEEEEEEEE-ecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 3578999999999988874211 011222 34566533211 1233466666544453
No 61
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=22.48 E-value=4.4e+02 Score=21.62 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhhhhHHhhhcc-CCcceEEEEccCcccchhhHHHHHHHHhCCEEee
Q 012945 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTC-TTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 255 (453)
Q Consensus 187 ~~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~-~~~~i~avk~~~~~~~r~~~Le~la~~tG~~i~~ 255 (453)
..+|......=.|++.+.+ ++++.++..+-..-.. ..++|=..+. ..+.+++..+.||..|||.++.
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~~~~a~~Vq 74 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVKETGACNVQ 74 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHHHHCCEEEE
Confidence 3456665555579998876 7899888765432211 1123332221 2344667889999999999886
No 62
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.61 E-value=2.9e+02 Score=21.94 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHcCCCEEEEecCcchhhhhhHH
Q 012945 190 SLPCMMQGQSLLVVAEDVENEVLGDIA 216 (453)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l~ 216 (453)
++.+.+....|||++.|.++.....+.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~ 43 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIK 43 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHH
Confidence 455555567899999999987765554
No 63
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.32 E-value=3.5e+02 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=18.1
Q ss_pred HHHHHHcCCCEEEEecCcchhhhhhH
Q 012945 190 SLPCMMQGQSLLVVAEDVENEVLGDI 215 (453)
Q Consensus 190 le~i~~~~~~lvii~~~i~~~al~~l 215 (453)
++.+.+....+||+++|+++.....+
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHH
Confidence 44454555689999999999754433
Done!