BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012946
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q99|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae
Length = 381
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 18 ERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLS-----E 72
E RA LTP+ +L+ G +I V+ S + FN +Y +AG I S
Sbjct: 24 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 77
Query: 73 CGLILGIKK-PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQG 131
+I+G+K+ P+ + + F+H +K Q +L + + +L+D E +E +QG
Sbjct: 78 DRIIIGLKEXPETDTFPLVHEHIQFAHCYKDQAGWQNVLXRFIKGHGTLYDLEFLENDQG 137
Query: 132 KRRLIAFGKFAGRA 145
RR+ AFG +AG A
Sbjct: 138 -RRVAAFGFYAGFA 150
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 303 PYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDS 362
P A INCIY K + ++L + ++ +V +S T + I I T +
Sbjct: 249 PQADIFINCIYLSKPIAPFTNXEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNK 308
Query: 363 PFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHF 403
P G + +D+LP+ P+EAS+ F
Sbjct: 309 PTVLVP--------TTAGPKLSVISIDHLPSLLPREASEFF 341
>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine
Dehydrogenase From Saccharomyces Cerevisiae.
pdb|3UH1|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae With Bound Saccharopine And
Nadh
pdb|3UHA|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad.
pdb|3UHA|B Chain B, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad
Length = 373
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 18 ERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLS-----E 72
E RA LTP+ +L+ G +I V+ S + FN +Y +AG I S
Sbjct: 16 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 69
Query: 73 CGLILGIKK-PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQG 131
+I+G+K+ P+ + + F+H +K Q +L + + +L+D E +E +QG
Sbjct: 70 DRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQG 129
Query: 132 KRRLIAFGKFAGRA 145
RR+ AFG +AG A
Sbjct: 130 -RRVAAFGFYAGFA 142
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 303 PYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDS 362
P A INCIY K + ++L + ++ +V +S T + I I T +
Sbjct: 241 PQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNK 300
Query: 363 PFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHF 403
P G + +D+LP+ P+EAS+ F
Sbjct: 301 PTVLVP--------TTAGPKLSVISIDHLPSLLPREASEFF 333
>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
pdb|2QRK|A Chain A, Crystal Structure Of Amp-Bound Saccharopine Dehydrogenase
(L-Lys Forming) From Saccharomyces Cerevisiae
pdb|2QRL|A Chain A, Crystal Structure Of Oxalylglycine-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
Length = 394
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 18 ERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLS-----E 72
E RA LTP+ +L+ G +I V+ S + FN +Y +AG I S
Sbjct: 37 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 90
Query: 73 CGLILGIKK-PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQG 131
+I+G+K+ P+ + + F+H +K Q +L + + +L+D E +E +QG
Sbjct: 91 DRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQG 150
Query: 132 KRRLIAFGKFAGRA 145
RR+ AFG +AG A
Sbjct: 151 -RRVAAFGFYAGFA 163
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 303 PYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDS 362
P A INCIY K + ++L + ++ +V +S T + I I T +
Sbjct: 262 PQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNK 321
Query: 363 PFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHF 403
P G + +D+LP+ P+EAS+ F
Sbjct: 322 PTVLVP--------TTAGPKLSVISIDHLPSLLPREASEFF 354
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 396 PKEASQHFGGLLSQFIGSLASVADIAKLPGNLR---RACIA--HGGALTSLYEYIPTMRN 450
P AS GG L QFI ADI N++ R CIA H G T + E P + N
Sbjct: 72 PVLASGFIGGELGQFIAKKLDHADIKHAFYNIKGETRNCIAILHEGQQTEILEQGPEIDN 131
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 396 PKEASQHFGGLLSQFIGSLASVADIAKLPGNLR---RACIA--HGGALTSLYEYIPTMRN 450
P AS GG L QFI ADI N++ R CIA H G T + E P + N
Sbjct: 72 PVLASGFIGGELGQFIAKKLDHADIKHAFYNIKGETRNCIAILHEGQQTEILEQGPEIDN 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,406,372
Number of Sequences: 62578
Number of extensions: 544267
Number of successful extensions: 1144
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 14
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)