Query 012946
Match_columns 452
No_of_seqs 131 out of 1129
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02819 lysine-ketoglutarate 100.0 2E-102 5E-107 873.5 38.2 442 2-451 3-445 (1042)
2 COG0686 Ald Alanine dehydrogen 100.0 3.6E-75 7.9E-80 569.7 24.5 338 5-441 1-353 (371)
3 TIGR00561 pntA NAD(P) transhyd 100.0 2.4E-72 5.3E-77 593.5 30.6 352 6-442 1-369 (511)
4 TIGR00518 alaDH alanine dehydr 100.0 2E-69 4.3E-74 556.7 30.6 338 5-441 1-352 (370)
5 PRK09424 pntA NAD(P) transhydr 100.0 8.6E-66 1.9E-70 545.1 27.8 353 5-442 1-370 (509)
6 COG3288 PntA NAD/NADP transhyd 100.0 8.6E-65 1.9E-69 495.6 17.5 340 6-437 1-356 (356)
7 PF05222 AlaDh_PNT_N: Alanine 100.0 4.6E-33 1E-37 249.1 9.8 126 8-142 1-136 (136)
8 PF01262 AlaDh_PNT_C: Alanine 100.0 1.1E-33 2.3E-38 261.2 2.2 153 195-387 11-168 (168)
9 PRK08306 dipicolinate synthase 99.9 6.4E-24 1.4E-28 213.0 20.6 247 26-416 16-291 (296)
10 TIGR02853 spore_dpaA dipicolin 99.2 2.3E-09 5.1E-14 107.5 19.2 136 201-412 148-286 (287)
11 KOG0172 Lysine-ketoglutarate r 99.1 2.7E-12 5.7E-17 130.6 -5.5 332 8-417 61-405 (445)
12 PF00670 AdoHcyase_NAD: S-aden 98.0 2.2E-05 4.7E-10 72.5 7.7 107 176-345 3-111 (162)
13 PF02826 2-Hacid_dh_C: D-isome 97.7 0.00011 2.5E-09 68.4 7.2 98 200-351 32-132 (178)
14 cd01080 NAD_bind_m-THF_DH_Cycl 97.6 0.00038 8.2E-09 64.8 9.0 78 201-347 41-119 (168)
15 PTZ00075 Adenosylhomocysteinas 97.5 0.00088 1.9E-08 71.6 12.3 127 163-345 214-342 (476)
16 PF01488 Shikimate_DH: Shikima 97.5 7.1E-05 1.5E-09 66.8 3.0 103 201-353 9-116 (135)
17 PRK14178 bifunctional 5,10-met 97.4 0.00047 1E-08 69.0 8.4 78 201-347 149-227 (279)
18 PLN02928 oxidoreductase family 97.4 0.00055 1.2E-08 70.7 8.6 105 201-344 156-262 (347)
19 PLN00203 glutamyl-tRNA reducta 97.2 0.0013 2.9E-08 71.3 9.6 101 202-347 264-372 (519)
20 PRK14191 bifunctional 5,10-met 97.2 0.0019 4.2E-08 64.9 9.7 78 201-347 154-232 (285)
21 PRK14192 bifunctional 5,10-met 97.2 0.0022 4.7E-08 64.5 9.9 78 201-347 156-234 (283)
22 TIGR00936 ahcY adenosylhomocys 97.2 0.007 1.5E-07 63.8 14.0 117 163-344 155-282 (406)
23 PRK14175 bifunctional 5,10-met 97.1 0.0019 4.1E-08 65.0 8.9 78 201-347 155-233 (286)
24 PRK05476 S-adenosyl-L-homocyst 97.1 0.0016 3.5E-08 69.0 8.4 119 163-344 172-299 (425)
25 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0022 4.7E-08 67.8 8.5 124 201-396 177-305 (417)
26 PRK13243 glyoxylate reductase; 97.0 0.002 4.4E-08 66.1 8.0 92 201-344 147-240 (333)
27 PRK08410 2-hydroxyacid dehydro 97.0 0.0025 5.5E-08 64.8 8.3 93 201-350 142-236 (311)
28 cd05311 NAD_bind_2_malic_enz N 96.9 0.0013 2.8E-08 63.9 5.7 37 299-344 92-128 (226)
29 PRK00045 hemA glutamyl-tRNA re 96.9 0.0026 5.7E-08 67.3 8.4 123 202-396 180-308 (423)
30 PRK06487 glycerate dehydrogena 96.9 0.0023 4.9E-08 65.3 7.4 87 201-344 145-233 (317)
31 PRK06932 glycerate dehydrogena 96.9 0.0025 5.3E-08 65.0 7.4 90 201-344 144-233 (314)
32 PRK07574 formate dehydrogenase 96.9 0.0022 4.8E-08 67.2 7.1 93 201-344 189-284 (385)
33 PRK06436 glycerate dehydrogena 96.8 0.0036 7.8E-08 63.5 7.9 89 201-344 119-209 (303)
34 PRK15438 erythronate-4-phospha 96.8 0.004 8.7E-08 65.1 8.5 89 201-344 113-207 (378)
35 COG0499 SAM1 S-adenosylhomocys 96.8 0.0037 8E-08 64.3 7.8 103 175-342 188-294 (420)
36 cd00401 AdoHcyase S-adenosyl-L 96.8 0.0049 1.1E-07 65.1 8.6 87 201-344 199-289 (413)
37 COG0111 SerA Phosphoglycerate 96.8 0.0052 1.1E-07 63.0 8.5 98 201-351 139-238 (324)
38 PRK14184 bifunctional 5,10-met 96.7 0.0071 1.5E-07 60.9 9.0 38 299-347 199-236 (286)
39 PLN03139 formate dehydrogenase 96.7 0.0033 7.2E-08 65.9 6.7 169 201-442 196-385 (386)
40 cd00762 NAD_bind_malic_enz NAD 96.7 0.0044 9.6E-08 61.3 6.9 172 201-409 22-224 (254)
41 PRK15409 bifunctional glyoxyla 96.6 0.0056 1.2E-07 62.7 7.9 92 201-344 142-236 (323)
42 PRK08605 D-lactate dehydrogena 96.6 0.007 1.5E-07 62.1 8.3 92 201-345 143-237 (332)
43 PRK00257 erythronate-4-phospha 96.6 0.0067 1.4E-07 63.5 8.1 94 201-351 113-212 (381)
44 PLN02306 hydroxypyruvate reduc 96.6 0.0066 1.4E-07 63.7 8.0 113 201-351 162-277 (386)
45 COG1052 LdhA Lactate dehydroge 96.5 0.0073 1.6E-07 61.9 7.9 92 201-344 143-236 (324)
46 PLN02494 adenosylhomocysteinas 96.5 0.0087 1.9E-07 64.1 8.4 120 163-345 214-342 (477)
47 PRK13940 glutamyl-tRNA reducta 96.3 0.03 6.4E-07 59.4 11.0 28 201-228 178-205 (414)
48 TIGR01327 PGDH D-3-phosphoglyc 96.2 0.014 3.1E-07 63.5 8.3 93 201-344 135-229 (525)
49 PRK12480 D-lactate dehydrogena 96.2 0.0088 1.9E-07 61.4 6.2 90 201-344 143-234 (330)
50 PRK11790 D-3-phosphoglycerate 96.2 0.011 2.3E-07 62.6 7.0 90 201-344 148-239 (409)
51 PRK14174 bifunctional 5,10-met 96.2 0.018 3.9E-07 58.3 8.3 38 299-347 201-238 (295)
52 PRK15469 ghrA bifunctional gly 96.2 0.0084 1.8E-07 61.1 6.0 92 201-344 133-226 (312)
53 PRK14176 bifunctional 5,10-met 96.2 0.027 5.8E-07 56.8 9.3 78 201-347 161-239 (287)
54 PRK14189 bifunctional 5,10-met 96.2 0.025 5.3E-07 57.0 9.0 78 201-347 155-233 (285)
55 PRK14190 bifunctional 5,10-met 96.1 0.028 6.1E-07 56.6 9.3 78 201-347 155-233 (284)
56 PRK13581 D-3-phosphoglycerate 96.1 0.018 3.9E-07 62.7 8.3 93 201-345 137-231 (526)
57 cd05191 NAD_bind_amino_acid_DH 96.1 0.058 1.3E-06 44.1 9.3 26 201-226 20-45 (86)
58 PRK12549 shikimate 5-dehydroge 96.0 0.026 5.5E-07 56.8 8.6 28 201-228 124-151 (284)
59 PRK00258 aroE shikimate 5-dehy 96.0 0.025 5.3E-07 56.5 8.3 30 201-230 120-150 (278)
60 PRK10792 bifunctional 5,10-met 95.9 0.038 8.2E-07 55.7 9.0 78 201-347 156-234 (285)
61 PRK14183 bifunctional 5,10-met 95.9 0.045 9.7E-07 55.0 9.5 78 201-347 154-232 (281)
62 COG0281 SfcA Malic enzyme [Ene 95.8 0.045 9.8E-07 57.5 9.5 30 200-229 195-224 (432)
63 cd01075 NAD_bind_Leu_Phe_Val_D 95.8 0.046 1E-06 52.1 8.8 30 201-230 25-54 (200)
64 COG0373 HemA Glutamyl-tRNA red 95.8 0.058 1.2E-06 57.0 10.0 97 201-346 175-276 (414)
65 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.1 2.2E-06 48.9 10.8 30 201-230 25-55 (194)
66 cd05312 NAD_bind_1_malic_enz N 95.7 0.022 4.7E-07 57.2 6.4 165 201-408 22-222 (279)
67 PF02882 THF_DHG_CYH_C: Tetrah 95.6 0.033 7.2E-07 51.5 6.7 79 201-348 33-112 (160)
68 cd05213 NAD_bind_Glutamyl_tRNA 95.6 0.021 4.5E-07 58.0 5.9 28 201-228 175-202 (311)
69 cd01065 NAD_bind_Shikimate_DH 95.5 0.09 1.9E-06 46.9 8.9 30 201-230 16-46 (155)
70 PRK14182 bifunctional 5,10-met 95.5 0.082 1.8E-06 53.2 9.4 78 201-347 154-232 (282)
71 PLN02516 methylenetetrahydrofo 95.5 0.081 1.7E-06 53.7 9.4 78 201-347 164-242 (299)
72 PRK14180 bifunctional 5,10-met 95.4 0.087 1.9E-06 53.0 9.5 78 201-347 155-233 (282)
73 PRK14171 bifunctional 5,10-met 95.4 0.1 2.2E-06 52.8 9.7 78 201-347 156-234 (288)
74 PF03949 Malic_M: Malic enzyme 95.3 0.051 1.1E-06 53.9 7.2 107 201-345 22-142 (255)
75 KOG1370 S-adenosylhomocysteine 95.3 0.037 8E-07 56.0 6.2 77 205-334 215-295 (434)
76 PRK14194 bifunctional 5,10-met 95.3 0.074 1.6E-06 54.0 8.5 78 201-347 156-234 (301)
77 PRK12861 malic enzyme; Reviewe 95.2 0.07 1.5E-06 60.4 8.8 157 201-408 186-357 (764)
78 PRK14173 bifunctional 5,10-met 95.1 0.12 2.7E-06 52.1 9.5 78 201-347 152-230 (287)
79 PRK14170 bifunctional 5,10-met 95.0 0.12 2.6E-06 52.1 9.1 78 201-347 154-232 (284)
80 PRK14169 bifunctional 5,10-met 95.0 0.15 3.3E-06 51.3 9.7 78 201-347 153-231 (282)
81 PRK14172 bifunctional 5,10-met 94.8 0.17 3.8E-06 50.8 9.7 78 201-347 155-233 (278)
82 PRK07232 bifunctional malic en 94.8 0.091 2E-06 59.5 8.4 163 201-409 182-354 (752)
83 PRK14179 bifunctional 5,10-met 94.8 0.12 2.6E-06 52.1 8.3 78 201-347 155-233 (284)
84 PLN02477 glutamate dehydrogena 94.7 0.083 1.8E-06 55.9 7.3 30 201-230 203-232 (410)
85 PRK14166 bifunctional 5,10-met 94.6 0.21 4.5E-06 50.4 9.5 78 201-347 154-232 (282)
86 PRK14186 bifunctional 5,10-met 94.5 0.2 4.4E-06 50.8 9.4 78 201-347 155-233 (297)
87 TIGR00507 aroE shikimate 5-deh 94.5 0.2 4.4E-06 49.6 9.3 28 203-230 116-143 (270)
88 cd05212 NAD_bind_m-THF_DH_Cycl 94.5 0.26 5.7E-06 44.5 9.1 78 201-347 25-103 (140)
89 PRK12862 malic enzyme; Reviewe 94.5 0.11 2.3E-06 59.2 8.0 159 201-409 190-362 (763)
90 PLN02616 tetrahydrofolate dehy 94.4 0.17 3.7E-06 52.5 8.7 78 201-347 228-306 (364)
91 PRK14181 bifunctional 5,10-met 94.3 0.23 5E-06 50.2 9.2 38 299-347 195-232 (287)
92 COG0190 FolD 5,10-methylene-te 94.3 0.14 3.1E-06 51.3 7.6 77 201-346 153-230 (283)
93 PLN02897 tetrahydrofolate dehy 94.3 0.17 3.8E-06 52.2 8.3 78 201-347 211-289 (345)
94 PRK14193 bifunctional 5,10-met 94.3 0.25 5.4E-06 49.8 9.3 38 299-347 198-235 (284)
95 PRK14982 acyl-ACP reductase; P 94.3 0.57 1.2E-05 48.5 12.1 39 299-346 210-248 (340)
96 PRK14177 bifunctional 5,10-met 94.2 0.25 5.5E-06 49.8 9.1 78 201-347 156-234 (284)
97 cd01076 NAD_bind_1_Glu_DH NAD( 94.2 0.14 3.1E-06 49.8 7.2 30 201-230 28-57 (227)
98 PLN03129 NADP-dependent malic 94.1 0.12 2.7E-06 56.6 7.2 301 24-409 156-519 (581)
99 PRK14168 bifunctional 5,10-met 94.0 0.26 5.6E-06 50.1 8.8 38 299-347 203-240 (297)
100 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.18 4E-06 48.1 7.1 38 299-347 121-159 (197)
101 COG0169 AroE Shikimate 5-dehyd 93.7 0.27 5.9E-06 49.5 8.4 41 201-241 123-168 (283)
102 PRK12749 quinate/shikimate deh 93.7 0.42 9E-06 48.2 9.7 28 201-228 121-148 (288)
103 COG0334 GdhA Glutamate dehydro 93.7 0.23 4.9E-06 52.3 7.9 31 201-231 204-234 (411)
104 PRK14187 bifunctional 5,10-met 93.7 0.42 9.2E-06 48.4 9.6 78 201-347 157-235 (294)
105 PRK12548 shikimate 5-dehydroge 93.6 0.25 5.4E-06 49.7 8.0 28 202-229 124-151 (289)
106 KOG0069 Glyoxylate/hydroxypyru 93.6 0.42 9.2E-06 49.3 9.6 42 299-344 212-253 (336)
107 PRK14167 bifunctional 5,10-met 93.5 0.41 8.9E-06 48.6 9.3 38 299-347 199-236 (297)
108 PRK14030 glutamate dehydrogena 93.2 0.095 2.1E-06 56.0 4.3 30 201-230 225-254 (445)
109 PRK13529 malate dehydrogenase; 92.7 0.23 5E-06 54.3 6.4 301 26-409 133-500 (563)
110 PRK14185 bifunctional 5,10-met 92.6 0.63 1.4E-05 47.2 9.1 38 299-347 199-236 (293)
111 PRK14031 glutamate dehydrogena 92.6 0.71 1.5E-05 49.4 9.9 30 201-230 225-254 (444)
112 TIGR01809 Shik-DH-AROM shikima 92.5 0.47 1E-05 47.6 8.0 27 202-228 123-149 (282)
113 KOG0068 D-3-phosphoglycerate d 92.5 0.49 1.1E-05 48.8 8.0 90 201-344 143-236 (406)
114 PRK14188 bifunctional 5,10-met 92.1 0.48 1E-05 48.1 7.5 78 201-347 155-233 (296)
115 PF03807 F420_oxidored: NADP o 92.1 0.092 2E-06 43.2 1.9 22 206-227 1-22 (96)
116 TIGR02992 ectoine_eutC ectoine 91.9 0.38 8.3E-06 49.2 6.7 45 299-353 189-233 (326)
117 COG2084 MmsB 3-hydroxyisobutyr 91.3 0.2 4.4E-06 50.5 3.8 90 205-345 1-96 (286)
118 PF03446 NAD_binding_2: NAD bi 91.3 0.057 1.2E-06 49.4 -0.2 89 205-345 2-95 (163)
119 PTZ00317 NADP-dependent malic 91.2 0.49 1.1E-05 51.8 6.8 100 299-409 374-499 (559)
120 COG1748 LYS9 Saccharopine dehy 91.1 0.64 1.4E-05 48.9 7.4 94 205-346 2-101 (389)
121 PRK05579 bifunctional phosphop 91.1 1.7 3.6E-05 46.1 10.6 29 202-230 186-231 (399)
122 COG2910 Putative NADH-flavin r 90.9 2.1 4.5E-05 40.9 9.8 123 205-401 1-133 (211)
123 PRK14027 quinate/shikimate deh 90.5 0.78 1.7E-05 46.2 7.2 27 202-228 125-151 (283)
124 cd05211 NAD_bind_Glu_Leu_Phe_V 90.2 0.47 1E-05 45.9 5.1 30 201-230 20-49 (217)
125 PRK00676 hemA glutamyl-tRNA re 90.2 1.3 2.9E-05 45.7 8.7 28 201-228 171-198 (338)
126 COG1064 AdhP Zn-dependent alco 89.7 1.2 2.5E-05 46.1 7.7 28 203-230 166-193 (339)
127 PRK13403 ketol-acid reductoiso 89.6 0.72 1.6E-05 47.5 6.1 150 201-407 13-170 (335)
128 PRK08618 ornithine cyclodeamin 89.6 0.95 2E-05 46.3 7.0 44 299-353 187-230 (325)
129 PRK08291 ectoine utilization p 89.5 0.84 1.8E-05 46.8 6.6 45 299-353 192-236 (330)
130 PLN02712 arogenate dehydrogena 89.5 0.77 1.7E-05 51.7 6.8 30 201-230 366-395 (667)
131 PRK11559 garR tartronate semia 89.3 0.42 9E-06 47.7 4.1 26 205-230 3-28 (296)
132 PRK12550 shikimate 5-dehydroge 89.3 1.8 3.9E-05 43.3 8.6 25 205-229 123-147 (272)
133 KOG0029 Amine oxidase [Seconda 88.9 0.39 8.5E-06 52.2 3.8 28 203-230 14-41 (501)
134 TIGR01505 tartro_sem_red 2-hyd 88.6 0.47 1E-05 47.4 3.9 25 206-230 1-25 (291)
135 PRK05479 ketol-acid reductoiso 88.5 3.3 7.1E-05 42.8 10.1 30 201-230 14-43 (330)
136 cd05313 NAD_bind_2_Glu_DH NAD( 87.9 0.82 1.8E-05 45.5 5.0 31 201-231 35-65 (254)
137 COG0604 Qor NADPH:quinone redu 87.9 2.1 4.7E-05 43.8 8.3 26 204-229 143-169 (326)
138 PRK11199 tyrA bifunctional cho 87.7 1.6 3.5E-05 45.6 7.4 30 201-230 93-125 (374)
139 PF01118 Semialdhyde_dh: Semia 87.7 0.8 1.7E-05 39.7 4.4 38 300-347 62-100 (121)
140 COG5322 Predicted dehydrogenas 87.0 2.8 6.2E-05 42.1 8.1 87 129-230 105-194 (351)
141 PF13460 NAD_binding_10: NADH( 86.5 3.3 7.1E-05 37.5 8.0 24 207-230 1-25 (183)
142 PTZ00082 L-lactate dehydrogena 86.3 2 4.3E-05 44.0 7.0 28 203-230 5-33 (321)
143 PF03435 Saccharop_dh: Sacchar 86.3 1.1 2.5E-05 46.4 5.3 22 207-228 1-22 (386)
144 PLN02256 arogenate dehydrogena 86.2 2.4 5.3E-05 43.0 7.5 28 203-230 35-62 (304)
145 PRK15461 NADH-dependent gamma- 85.6 0.76 1.6E-05 46.2 3.5 25 206-230 3-27 (296)
146 KOG1201 Hydroxysteroid 17-beta 85.1 1.8 3.9E-05 43.9 5.8 101 200-329 34-140 (300)
147 PRK09414 glutamate dehydrogena 85.0 1.3 2.8E-05 47.5 5.1 47 175-230 212-258 (445)
148 PRK12490 6-phosphogluconate de 84.8 1 2.3E-05 45.3 4.1 25 206-230 2-26 (299)
149 PTZ00079 NADP-specific glutama 84.7 1.4 3E-05 47.3 5.0 49 174-231 216-264 (454)
150 PRK09880 L-idonate 5-dehydroge 84.4 3.4 7.4E-05 41.8 7.7 27 203-229 169-195 (343)
151 PRK08655 prephenate dehydrogen 84.3 2.4 5.3E-05 45.2 6.8 26 205-230 1-27 (437)
152 PF00070 Pyr_redox: Pyridine n 84.2 1.5 3.2E-05 35.0 3.9 25 206-230 1-25 (80)
153 TIGR00872 gnd_rel 6-phosphoglu 84.1 1.4 2.9E-05 44.4 4.6 25 206-230 2-26 (298)
154 PF01210 NAD_Gly3P_dh_N: NAD-d 83.9 1.5 3.3E-05 39.8 4.4 25 206-230 1-25 (157)
155 TIGR02371 ala_DH_arch alanine 83.8 6.2 0.00014 40.4 9.3 45 299-353 187-231 (325)
156 PRK09599 6-phosphogluconate de 83.7 1.6 3.4E-05 44.0 4.8 25 206-230 2-26 (301)
157 PF13241 NAD_binding_7: Putati 82.5 1.5 3.3E-05 37.0 3.5 34 202-235 5-40 (103)
158 PRK15182 Vi polysaccharide bio 82.5 2.3 5E-05 45.3 5.7 29 201-230 3-31 (425)
159 PLN02520 bifunctional 3-dehydr 82.4 3.2 6.9E-05 45.5 6.9 29 202-230 377-405 (529)
160 TIGR03026 NDP-sugDHase nucleot 82.2 1.3 2.9E-05 46.6 3.8 25 206-230 2-26 (411)
161 PLN00106 malate dehydrogenase 82.1 5.1 0.00011 41.2 7.8 28 201-228 15-43 (323)
162 PRK00066 ldh L-lactate dehydro 81.8 2.8 6E-05 42.8 5.8 26 203-228 5-30 (315)
163 PF07992 Pyr_redox_2: Pyridine 81.3 1.8 3.9E-05 39.7 3.9 25 206-230 1-25 (201)
164 PRK06046 alanine dehydrogenase 81.2 6.2 0.00013 40.4 8.1 44 299-353 189-232 (326)
165 COG2085 Predicted dinucleotide 81.1 3 6.5E-05 40.3 5.4 26 205-230 2-27 (211)
166 PRK14874 aspartate-semialdehyd 80.5 4.4 9.6E-05 41.6 6.8 35 303-347 62-97 (334)
167 KOG2250 Glutamate/leucine/phen 80.3 7.4 0.00016 42.0 8.4 31 200-230 247-277 (514)
168 TIGR01470 cysG_Nterm siroheme 80.1 3.1 6.8E-05 39.8 5.2 33 203-235 8-42 (205)
169 PLN02172 flavin-containing mon 80.1 1.8 4E-05 46.4 4.0 29 202-230 8-36 (461)
170 KOG1399 Flavin-containing mono 80.0 1.5 3.3E-05 47.1 3.3 28 203-230 5-32 (448)
171 PF02423 OCD_Mu_crystall: Orni 79.5 2.9 6.2E-05 42.6 5.0 47 299-353 187-233 (313)
172 PRK05600 thiamine biosynthesis 79.4 1.3 2.7E-05 46.4 2.4 28 201-228 38-65 (370)
173 cd05291 HicDH_like L-2-hydroxy 79.4 5.5 0.00012 40.2 7.0 23 206-228 2-24 (306)
174 PRK06223 malate dehydrogenase; 79.3 5 0.00011 40.3 6.7 26 205-230 3-29 (307)
175 PRK00856 pyrB aspartate carbam 79.0 11 0.00024 38.4 9.0 63 164-236 123-193 (305)
176 PLN02712 arogenate dehydrogena 79.0 3.4 7.3E-05 46.6 5.7 28 203-230 51-78 (667)
177 PRK06141 ornithine cyclodeamin 78.8 8.7 0.00019 39.1 8.3 45 299-353 184-228 (314)
178 PRK07502 cyclohexadienyl dehyd 78.8 3.1 6.8E-05 41.8 5.0 24 205-228 7-30 (307)
179 PLN02268 probable polyamine ox 78.7 1.9 4.1E-05 45.3 3.5 25 206-230 2-26 (435)
180 KOG0685 Flavin-containing amin 78.6 1.8 3.8E-05 46.6 3.2 28 203-230 20-47 (498)
181 PRK03369 murD UDP-N-acetylmura 78.3 3.9 8.4E-05 44.2 5.8 27 204-230 12-38 (488)
182 PTZ00117 malate dehydrogenase; 78.2 6.4 0.00014 40.2 7.1 28 203-230 4-32 (319)
183 PRK07417 arogenate dehydrogena 78.1 3.2 7E-05 41.2 4.8 25 206-230 2-26 (279)
184 PRK07236 hypothetical protein; 78.0 2.2 4.8E-05 44.0 3.7 28 203-230 5-32 (386)
185 PRK11883 protoporphyrinogen ox 78.0 2 4.3E-05 44.9 3.4 23 205-227 1-23 (451)
186 PRK06753 hypothetical protein; 77.7 2.3 4.9E-05 43.4 3.6 26 205-230 1-26 (373)
187 PRK12491 pyrroline-5-carboxyla 77.6 4 8.7E-05 40.7 5.3 24 205-228 3-26 (272)
188 PRK10262 thioredoxin reductase 77.5 2.4 5.2E-05 42.6 3.7 30 201-230 3-32 (321)
189 PRK08163 salicylate hydroxylas 77.0 2.5 5.4E-05 43.5 3.8 28 203-230 3-30 (396)
190 KOG0024 Sorbitol dehydrogenase 76.9 2.3 4.9E-05 43.8 3.3 25 204-228 170-194 (354)
191 PRK15059 tartronate semialdehy 76.9 3.4 7.4E-05 41.6 4.6 25 206-230 2-26 (292)
192 PLN03075 nicotianamine synthas 76.9 14 0.00031 37.5 9.0 66 154-227 82-147 (296)
193 PRK07233 hypothetical protein; 76.8 2.2 4.7E-05 44.2 3.3 25 206-230 1-25 (434)
194 PRK06847 hypothetical protein; 76.8 2.5 5.3E-05 43.1 3.6 27 204-230 4-30 (375)
195 PRK14619 NAD(P)H-dependent gly 76.1 4.1 9E-05 41.1 5.0 27 204-230 4-30 (308)
196 PRK06719 precorrin-2 dehydroge 76.1 4.8 0.0001 36.8 5.0 40 201-240 10-51 (157)
197 TIGR01292 TRX_reduct thioredox 76.0 2.5 5.3E-05 41.3 3.2 25 206-230 2-26 (300)
198 PRK07340 ornithine cyclodeamin 75.9 8.4 0.00018 39.1 7.1 44 299-353 183-226 (304)
199 cd05188 MDR Medium chain reduc 75.6 14 0.00031 34.8 8.4 28 203-230 134-161 (271)
200 PF01494 FAD_binding_3: FAD bi 75.6 3 6.6E-05 41.2 3.8 26 205-230 2-27 (356)
201 PRK06545 prephenate dehydrogen 75.5 5.1 0.00011 41.5 5.5 25 206-230 2-26 (359)
202 PLN02612 phytoene desaturase 75.1 5.7 0.00012 43.8 6.1 33 198-230 87-119 (567)
203 TIGR01692 HIBADH 3-hydroxyisob 74.8 2.6 5.6E-05 42.1 3.1 22 209-230 1-22 (288)
204 TIGR00670 asp_carb_tr aspartat 74.7 21 0.00046 36.3 9.7 63 164-236 117-187 (301)
205 TIGR03325 BphB_TodD cis-2,3-di 74.2 12 0.00027 36.0 7.6 28 203-230 4-32 (262)
206 TIGR00465 ilvC ketol-acid redu 74.2 29 0.00064 35.5 10.6 27 204-230 3-29 (314)
207 PRK14618 NAD(P)H-dependent gly 74.2 10 0.00022 38.5 7.3 27 204-230 4-30 (328)
208 TIGR03140 AhpF alkyl hydropero 74.0 4.5 9.7E-05 43.9 4.9 29 202-230 210-238 (515)
209 PRK12831 putative oxidoreducta 74.0 4 8.7E-05 43.8 4.5 28 203-230 139-166 (464)
210 COG0644 FixC Dehydrogenases (f 73.9 3.1 6.6E-05 43.5 3.5 26 205-230 4-29 (396)
211 PRK14106 murD UDP-N-acetylmura 73.8 9.3 0.0002 40.3 7.2 28 203-230 4-31 (450)
212 PRK12769 putative oxidoreducta 73.8 3.4 7.4E-05 46.3 4.0 27 204-230 327-353 (654)
213 PF00743 FMO-like: Flavin-bind 73.6 3.4 7.3E-05 45.3 3.8 26 205-230 2-27 (531)
214 PTZ00188 adrenodoxin reductase 73.5 4.2 9.2E-05 44.3 4.5 28 203-230 38-66 (506)
215 PLN02383 aspartate semialdehyd 73.4 7.7 0.00017 40.2 6.2 27 202-228 5-32 (344)
216 TIGR01915 npdG NADPH-dependent 73.2 4.9 0.00011 38.5 4.4 26 205-230 1-27 (219)
217 PRK00779 ornithine carbamoyltr 73.0 26 0.00057 35.7 9.9 65 164-236 120-187 (304)
218 TIGR01850 argC N-acetyl-gamma- 72.9 7.3 0.00016 40.3 5.9 39 300-348 64-103 (346)
219 TIGR01202 bchC 2-desacetyl-2-h 72.8 3.7 8.1E-05 41.0 3.7 27 204-230 145-171 (308)
220 KOG1200 Mitochondrial/plastidi 72.5 14 0.0003 35.8 7.1 34 203-236 13-48 (256)
221 PF01134 GIDA: Glucose inhibit 72.4 3.7 7.9E-05 43.4 3.6 25 206-230 1-25 (392)
222 PRK06567 putative bifunctional 72.3 4.4 9.5E-05 47.6 4.5 28 203-230 382-409 (1028)
223 PRK05717 oxidoreductase; Valid 72.3 5.6 0.00012 38.1 4.7 30 201-230 7-37 (255)
224 PLN02427 UDP-apiose/xylose syn 72.2 12 0.00027 38.5 7.5 30 201-230 11-42 (386)
225 PF00208 ELFV_dehydrog: Glutam 72.2 4.5 9.8E-05 39.9 4.0 30 201-230 29-58 (244)
226 TIGR02356 adenyl_thiF thiazole 72.1 2.3 4.9E-05 40.5 1.8 28 201-228 18-45 (202)
227 PRK06182 short chain dehydroge 71.9 13 0.00027 36.2 7.1 26 205-230 4-30 (273)
228 COG0421 SpeE Spermidine syntha 71.8 9.6 0.00021 38.5 6.3 37 298-334 143-184 (282)
229 PRK15057 UDP-glucose 6-dehydro 71.7 10 0.00022 39.9 6.8 25 205-230 1-25 (388)
230 PRK06823 ornithine cyclodeamin 71.7 23 0.0005 36.2 9.2 45 299-353 187-231 (315)
231 PRK12771 putative glutamate sy 71.5 4.1 8.8E-05 44.7 3.9 27 204-230 137-163 (564)
232 PRK02705 murD UDP-N-acetylmura 71.4 4.4 9.6E-05 43.0 4.0 26 205-230 1-26 (459)
233 PRK06079 enoyl-(acyl carrier p 71.2 13 0.00028 35.8 7.0 29 202-230 5-36 (252)
234 PF00890 FAD_binding_2: FAD bi 71.1 4.1 8.8E-05 42.4 3.7 24 207-230 2-25 (417)
235 PRK00436 argC N-acetyl-gamma-g 71.1 14 0.00031 38.0 7.6 38 302-349 66-104 (343)
236 PRK09186 flagellin modificatio 71.1 15 0.00033 34.9 7.4 26 205-230 5-31 (256)
237 COG2518 Pcm Protein-L-isoaspar 71.0 7.7 0.00017 37.5 5.2 92 203-334 72-163 (209)
238 PF13450 NAD_binding_8: NAD(P) 70.8 4.8 0.0001 31.5 3.1 22 209-230 1-22 (68)
239 PLN02852 ferredoxin-NADP+ redu 70.7 4.9 0.00011 43.7 4.3 28 203-230 25-54 (491)
240 PRK15317 alkyl hydroperoxide r 70.5 6.2 0.00013 42.8 5.0 28 203-230 210-237 (517)
241 PRK05884 short chain dehydroge 70.4 8.1 0.00018 36.6 5.3 25 206-230 2-27 (223)
242 PLN02576 protoporphyrinogen ox 70.4 3.8 8.3E-05 43.7 3.3 28 203-230 11-39 (496)
243 PRK12810 gltD glutamate syntha 70.2 5.2 0.00011 42.9 4.3 27 204-230 143-169 (471)
244 PRK08229 2-dehydropantoate 2-r 70.1 12 0.00026 37.9 6.8 26 205-230 3-28 (341)
245 PLN02328 lysine-specific histo 70.0 4.6 0.0001 46.5 4.0 30 201-230 235-264 (808)
246 PTZ00325 malate dehydrogenase; 69.9 28 0.0006 35.8 9.3 25 203-227 7-32 (321)
247 PRK08267 short chain dehydroge 69.8 14 0.00031 35.4 6.9 26 205-230 2-28 (260)
248 TIGR01316 gltA glutamate synth 69.8 5.3 0.00012 42.6 4.2 28 203-230 132-159 (449)
249 cd08230 glucose_DH Glucose deh 69.7 5.5 0.00012 40.5 4.2 27 204-230 173-199 (355)
250 KOG1257 NADP+-dependent malic 69.5 30 0.00065 37.9 9.6 97 306-409 391-507 (582)
251 PRK06718 precorrin-2 dehydroge 69.4 8.2 0.00018 36.8 5.0 39 202-240 8-48 (202)
252 PLN02529 lysine-specific histo 69.3 5.2 0.00011 45.7 4.2 28 203-230 159-186 (738)
253 PRK07364 2-octaprenyl-6-methox 69.2 4.9 0.00011 41.6 3.8 27 204-230 18-44 (415)
254 PRK11064 wecC UDP-N-acetyl-D-m 69.2 6.6 0.00014 41.6 4.8 26 205-230 4-29 (415)
255 PF13738 Pyr_redox_3: Pyridine 69.1 4.6 9.9E-05 37.2 3.2 23 208-230 1-24 (203)
256 PRK05693 short chain dehydroge 69.0 14 0.00031 35.8 6.8 25 206-230 3-28 (274)
257 CHL00194 ycf39 Ycf39; Provisio 68.8 13 0.00028 37.2 6.6 26 205-230 1-27 (317)
258 PRK13512 coenzyme A disulfide 68.8 4.8 0.0001 42.6 3.6 30 205-234 2-35 (438)
259 PRK06407 ornithine cyclodeamin 68.7 19 0.00042 36.5 7.8 45 299-353 177-221 (301)
260 COG1063 Tdh Threonine dehydrog 68.7 5.4 0.00012 41.1 3.9 24 206-229 171-194 (350)
261 PRK04284 ornithine carbamoyltr 68.5 11 0.00024 38.9 6.1 36 201-236 152-191 (332)
262 TIGR01279 DPOR_bchN light-inde 68.5 39 0.00085 35.7 10.3 126 91-230 154-300 (407)
263 PLN02858 fructose-bisphosphate 68.4 5.8 0.00013 48.4 4.6 90 204-345 324-419 (1378)
264 PRK11863 N-acetyl-gamma-glutam 68.4 23 0.00051 36.3 8.3 38 301-348 47-85 (313)
265 PRK07904 short chain dehydroge 68.4 25 0.00053 34.0 8.3 28 203-230 7-36 (253)
266 TIGR01318 gltD_gamma_fam gluta 68.3 5.7 0.00012 42.6 4.1 28 203-230 140-167 (467)
267 PRK08594 enoyl-(acyl carrier p 68.1 14 0.00029 35.9 6.4 28 203-230 6-36 (257)
268 PLN02253 xanthoxin dehydrogena 68.1 18 0.00039 35.1 7.3 30 201-230 15-45 (280)
269 TIGR02360 pbenz_hydroxyl 4-hyd 68.0 5 0.00011 41.7 3.5 27 204-230 2-28 (390)
270 TIGR03315 Se_ygfK putative sel 67.9 5.1 0.00011 47.3 3.9 27 204-230 537-563 (1012)
271 cd05292 LDH_2 A subgroup of L- 67.7 21 0.00046 36.2 7.9 24 205-228 1-24 (308)
272 PRK11749 dihydropyrimidine deh 67.3 6.5 0.00014 41.8 4.3 28 203-230 139-166 (457)
273 TIGR03219 salicylate_mono sali 67.1 5.3 0.00011 41.7 3.5 26 205-230 1-27 (414)
274 PRK08085 gluconate 5-dehydroge 67.1 15 0.00033 35.1 6.4 28 203-230 8-36 (254)
275 PRK07538 hypothetical protein; 67.0 5.3 0.00012 41.7 3.5 26 205-230 1-26 (413)
276 COG3967 DltE Short-chain dehyd 67.0 7.8 0.00017 37.7 4.2 111 204-347 5-141 (245)
277 PRK12778 putative bifunctional 67.0 6.6 0.00014 44.7 4.5 28 203-230 430-457 (752)
278 KOG1205 Predicted dehydrogenas 67.0 29 0.00063 35.1 8.6 38 202-239 10-52 (282)
279 COG0002 ArgC Acetylglutamate s 66.9 16 0.00034 38.1 6.7 37 302-348 68-105 (349)
280 PRK08265 short chain dehydroge 66.9 13 0.00028 35.9 6.0 28 203-230 5-33 (261)
281 PRK07208 hypothetical protein; 66.9 5.3 0.00012 42.4 3.5 27 204-230 4-30 (479)
282 PRK12936 3-ketoacyl-(acyl-carr 66.5 12 0.00026 35.1 5.6 28 203-230 5-33 (245)
283 COG0039 Mdh Malate/lactate deh 66.5 14 0.0003 37.9 6.2 24 205-228 1-24 (313)
284 cd01339 LDH-like_MDH L-lactate 66.5 11 0.00023 38.0 5.4 24 207-230 1-25 (300)
285 PRK08644 thiamine biosynthesis 66.5 11 0.00023 36.3 5.2 49 176-229 4-53 (212)
286 PRK12809 putative oxidoreducta 66.4 5.9 0.00013 44.3 3.9 27 204-230 310-336 (639)
287 TIGR02028 ChlP geranylgeranyl 66.4 5.7 0.00012 41.6 3.6 26 205-230 1-26 (398)
288 PRK06949 short chain dehydroge 66.3 11 0.00023 36.0 5.2 28 203-230 8-36 (258)
289 PLN02858 fructose-bisphosphate 66.3 7.6 0.00016 47.4 5.0 90 204-345 4-99 (1378)
290 PRK09754 phenylpropionate diox 66.2 5.2 0.00011 41.6 3.2 25 204-228 3-27 (396)
291 PRK06116 glutathione reductase 66.2 6.4 0.00014 41.6 4.0 28 206-233 6-35 (450)
292 cd05290 LDH_3 A subgroup of L- 65.9 16 0.00034 37.3 6.5 23 206-228 1-23 (307)
293 PRK09853 putative selenate red 65.8 5.9 0.00013 46.7 3.8 27 204-230 539-565 (1019)
294 PRK07588 hypothetical protein; 65.8 5.8 0.00013 40.9 3.5 26 205-230 1-26 (391)
295 PRK07825 short chain dehydroge 65.8 19 0.00041 34.8 6.9 27 204-230 5-32 (273)
296 TIGR00137 gid_trmFO tRNA:m(5)U 65.8 5.5 0.00012 42.6 3.3 25 206-230 2-26 (433)
297 PTZ00324 glutamate dehydrogena 65.7 29 0.00062 40.9 9.2 24 201-224 660-685 (1002)
298 PRK07109 short chain dehydroge 65.7 19 0.0004 36.7 7.1 29 202-230 6-35 (334)
299 PRK12779 putative bifunctional 65.5 5.9 0.00013 46.5 3.7 28 203-230 305-332 (944)
300 TIGR02731 phytoene_desat phyto 65.4 5.4 0.00012 42.1 3.2 25 206-230 1-25 (453)
301 COG0665 DadA Glycine/D-amino a 65.4 7.4 0.00016 39.6 4.1 28 203-230 3-30 (387)
302 PRK06475 salicylate hydroxylas 65.1 5.8 0.00013 41.2 3.3 26 205-230 3-28 (400)
303 PRK07045 putative monooxygenas 65.0 6.5 0.00014 40.5 3.6 27 204-230 5-31 (388)
304 PLN02927 antheraxanthin epoxid 64.9 6.3 0.00014 44.5 3.7 29 202-230 79-107 (668)
305 PRK12831 putative oxidoreducta 64.8 7 0.00015 41.9 3.9 28 203-230 280-307 (464)
306 PRK12770 putative glutamate sy 64.7 7.1 0.00015 39.9 3.8 28 203-230 17-44 (352)
307 PRK04690 murD UDP-N-acetylmura 64.6 6.9 0.00015 42.0 3.8 26 205-230 9-34 (468)
308 PRK07589 ornithine cyclodeamin 64.5 26 0.00057 36.4 7.9 46 299-353 188-234 (346)
309 PRK05562 precorrin-2 dehydroge 64.5 13 0.00027 36.4 5.3 38 203-240 24-63 (223)
310 PRK06484 short chain dehydroge 64.4 23 0.00051 37.9 7.9 28 203-230 4-32 (520)
311 PRK01438 murD UDP-N-acetylmura 64.4 8.5 0.00018 41.1 4.5 29 202-230 14-42 (480)
312 PRK00711 D-amino acid dehydrog 64.3 7.3 0.00016 40.4 3.9 25 206-230 2-26 (416)
313 PRK06416 dihydrolipoamide dehy 64.2 7 0.00015 41.5 3.8 26 205-230 5-30 (462)
314 TIGR02964 xanthine_xdhC xanthi 64.2 9.5 0.00021 37.6 4.4 28 203-230 99-126 (246)
315 PRK06912 acoL dihydrolipoamide 64.2 6.7 0.00015 41.7 3.7 25 206-230 2-26 (458)
316 COG0569 TrkA K+ transport syst 64.2 7.5 0.00016 37.7 3.7 26 205-230 1-26 (225)
317 PLN02342 ornithine carbamoyltr 64.2 18 0.00038 37.7 6.6 63 164-236 162-229 (348)
318 TIGR01350 lipoamide_DH dihydro 64.1 7.5 0.00016 41.1 4.0 25 206-230 3-27 (461)
319 PLN02968 Probable N-acetyl-gam 63.9 16 0.00036 38.3 6.4 37 302-348 102-138 (381)
320 PRK08641 sdhA succinate dehydr 63.7 7 0.00015 43.3 3.8 27 204-230 3-29 (589)
321 TIGR02032 GG-red-SF geranylger 63.6 7.5 0.00016 37.6 3.6 25 206-230 2-26 (295)
322 PRK12409 D-amino acid dehydrog 63.5 7.4 0.00016 40.4 3.7 25 206-230 3-27 (410)
323 COG1648 CysG Siroheme synthase 63.4 12 0.00027 36.1 4.9 40 201-240 9-50 (210)
324 PLN02586 probable cinnamyl alc 63.4 8.1 0.00018 39.6 4.0 27 204-230 184-210 (360)
325 PRK05732 2-octaprenyl-6-methox 63.4 7.4 0.00016 39.9 3.7 27 204-230 3-32 (395)
326 PF01266 DAO: FAD dependent ox 63.3 8.2 0.00018 38.2 3.9 25 206-230 1-25 (358)
327 PRK08274 tricarballylate dehyd 63.2 7.3 0.00016 41.4 3.7 26 205-230 5-30 (466)
328 PRK08849 2-octaprenyl-3-methyl 63.2 7 0.00015 40.4 3.5 26 205-230 4-29 (384)
329 PRK12367 short chain dehydroge 63.2 32 0.00069 33.4 7.9 30 201-230 11-41 (245)
330 PLN02527 aspartate carbamoyltr 63.1 37 0.0008 34.7 8.6 63 164-236 118-189 (306)
331 COG0654 UbiH 2-polyprenyl-6-me 63.1 7.4 0.00016 40.4 3.6 27 204-230 2-28 (387)
332 PRK06139 short chain dehydroge 62.5 30 0.00065 35.3 7.9 29 202-230 5-34 (330)
333 PRK05872 short chain dehydroge 62.4 32 0.00068 34.1 7.9 29 202-230 7-36 (296)
334 PRK08243 4-hydroxybenzoate 3-m 62.3 7.6 0.00017 40.2 3.6 26 205-230 3-28 (392)
335 PRK07251 pyridine nucleotide-d 62.2 7.7 0.00017 40.9 3.6 26 205-230 4-29 (438)
336 TIGR01421 gluta_reduc_1 glutat 62.2 7 0.00015 41.6 3.3 25 206-230 4-28 (450)
337 PRK07024 short chain dehydroge 62.1 16 0.00035 35.0 5.6 26 205-230 3-29 (257)
338 PRK07060 short chain dehydroge 62.0 19 0.00041 33.9 6.0 28 203-230 8-36 (245)
339 PTZ00142 6-phosphogluconate de 62.0 8.8 0.00019 41.5 4.0 26 205-230 2-27 (470)
340 PRK09126 hypothetical protein; 62.0 7.4 0.00016 39.9 3.4 26 205-230 4-29 (392)
341 PRK08993 2-deoxy-D-gluconate 3 61.9 28 0.00061 33.3 7.2 28 203-230 9-37 (253)
342 TIGR01296 asd_B aspartate-semi 61.9 18 0.00039 37.3 6.2 36 302-347 59-95 (339)
343 TIGR01988 Ubi-OHases Ubiquinon 61.7 8.2 0.00018 39.2 3.6 24 207-230 2-25 (385)
344 smart00859 Semialdhyde_dh Semi 61.7 10 0.00023 32.5 3.8 21 206-226 1-22 (122)
345 PRK07121 hypothetical protein; 61.5 8.1 0.00018 41.5 3.7 27 204-230 20-46 (492)
346 PRK08401 L-aspartate oxidase; 61.3 8.7 0.00019 41.1 3.9 26 205-230 2-27 (466)
347 PRK08773 2-octaprenyl-3-methyl 61.2 8.8 0.00019 39.6 3.8 28 203-230 5-32 (392)
348 TIGR01984 UbiH 2-polyprenyl-6- 61.1 8.4 0.00018 39.3 3.6 24 207-230 2-26 (382)
349 PRK08850 2-octaprenyl-6-methox 61.1 8.5 0.00018 40.0 3.7 27 204-230 4-30 (405)
350 PF02737 3HCDH_N: 3-hydroxyacy 61.1 6.4 0.00014 36.7 2.5 25 206-230 1-25 (180)
351 COG2423 Predicted ornithine cy 61.0 29 0.00063 35.9 7.4 45 299-353 190-234 (330)
352 PRK05993 short chain dehydroge 61.0 20 0.00044 35.0 6.2 26 205-230 5-31 (277)
353 TIGR01813 flavo_cyto_c flavocy 60.9 8.1 0.00017 40.7 3.5 24 207-230 2-26 (439)
354 PRK06292 dihydrolipoamide dehy 60.7 9.4 0.0002 40.4 4.0 25 206-230 5-29 (460)
355 PRK07326 short chain dehydroge 60.5 21 0.00046 33.4 6.0 26 205-230 7-33 (237)
356 TIGR01790 carotene-cycl lycope 60.5 10 0.00022 38.9 4.1 27 207-233 2-30 (388)
357 PF00289 CPSase_L_chain: Carba 60.5 8.3 0.00018 33.3 2.9 26 205-230 3-28 (110)
358 TIGR02023 BchP-ChlP geranylger 60.3 8.7 0.00019 39.7 3.6 25 206-230 2-26 (388)
359 PRK08223 hypothetical protein; 60.0 3.8 8.3E-05 41.5 0.8 28 201-228 24-51 (287)
360 COG1232 HemY Protoporphyrinoge 60.0 7.8 0.00017 41.6 3.2 26 205-230 1-28 (444)
361 PRK07608 ubiquinone biosynthes 60.0 8.8 0.00019 39.3 3.5 26 205-230 6-31 (388)
362 PRK11880 pyrroline-5-carboxyla 59.8 57 0.0012 31.8 9.1 23 205-227 3-25 (267)
363 PRK12814 putative NADPH-depend 59.7 9.1 0.0002 43.0 3.8 27 204-230 193-219 (652)
364 PRK07097 gluconate 5-dehydroge 59.7 17 0.00037 35.0 5.3 29 202-230 8-37 (265)
365 PRK06481 fumarate reductase fl 59.6 8.3 0.00018 41.8 3.4 26 205-230 62-87 (506)
366 TIGR00562 proto_IX_ox protopor 59.5 8.7 0.00019 40.5 3.5 26 205-230 3-32 (462)
367 COG4221 Short-chain alcohol de 59.5 42 0.00091 33.3 7.9 40 201-240 3-47 (246)
368 PRK07424 bifunctional sterol d 59.5 45 0.00098 35.4 8.8 30 201-230 175-205 (406)
369 PRK06370 mercuric reductase; V 59.5 9.1 0.0002 40.7 3.6 26 205-230 6-31 (463)
370 TIGR00292 thiazole biosynthesi 59.4 9.2 0.0002 37.8 3.4 27 204-230 21-47 (254)
371 PRK06935 2-deoxy-D-gluconate 3 59.2 34 0.00073 32.7 7.3 29 202-230 13-42 (258)
372 PRK04176 ribulose-1,5-biphosph 58.9 10 0.00022 37.5 3.6 27 204-230 25-51 (257)
373 PRK01710 murD UDP-N-acetylmura 58.8 11 0.00024 40.1 4.2 28 203-230 13-40 (458)
374 KOG2311 NAD/FAD-utilizing prot 58.8 6.2 0.00013 42.8 2.1 27 204-230 28-54 (679)
375 TIGR02818 adh_III_F_hyde S-(hy 58.8 11 0.00023 38.8 3.9 27 204-230 186-213 (368)
376 PRK07679 pyrroline-5-carboxyla 58.7 13 0.00029 36.8 4.4 23 205-227 4-26 (279)
377 PRK07832 short chain dehydroge 58.7 26 0.00056 34.0 6.4 25 206-230 2-27 (272)
378 TIGR02053 MerA mercuric reduct 58.7 9.4 0.0002 40.6 3.6 24 207-230 3-26 (463)
379 TIGR01851 argC_other N-acetyl- 58.6 37 0.00079 34.9 7.6 40 299-348 44-84 (310)
380 PRK05854 short chain dehydroge 58.6 38 0.00082 34.0 7.8 30 201-230 11-41 (313)
381 PLN02350 phosphogluconate dehy 58.4 11 0.00024 41.0 4.1 29 205-233 7-36 (493)
382 PRK06398 aldose dehydrogenase; 58.4 27 0.00058 33.7 6.4 28 203-230 5-33 (258)
383 PRK13814 pyrB aspartate carbam 58.4 70 0.0015 32.7 9.6 36 201-236 154-195 (310)
384 PRK06194 hypothetical protein; 58.4 23 0.00049 34.5 6.0 28 203-230 5-33 (287)
385 PRK08010 pyridine nucleotide-d 58.3 9.4 0.0002 40.3 3.5 26 205-230 4-29 (441)
386 COG0300 DltE Short-chain dehyd 58.3 29 0.00062 34.8 6.7 28 203-230 5-33 (265)
387 TIGR01424 gluta_reduc_2 glutat 58.3 9 0.00019 40.6 3.3 25 206-230 4-28 (446)
388 PRK07984 enoyl-(acyl carrier p 58.3 26 0.00056 34.3 6.3 28 203-230 5-35 (262)
389 TIGR02733 desat_CrtD C-3',4' d 58.2 10 0.00022 40.7 3.7 26 205-230 2-27 (492)
390 PRK13984 putative oxidoreducta 57.9 11 0.00023 41.7 4.0 28 203-230 282-309 (604)
391 TIGR00521 coaBC_dfp phosphopan 57.8 34 0.00073 36.2 7.4 30 201-230 182-228 (390)
392 PRK06617 2-octaprenyl-6-methox 57.8 11 0.00023 38.9 3.7 26 205-230 2-27 (374)
393 PRK05714 2-octaprenyl-3-methyl 57.8 10 0.00022 39.2 3.6 26 205-230 3-28 (405)
394 cd08239 THR_DH_like L-threonin 57.7 10 0.00023 37.9 3.6 27 204-230 164-191 (339)
395 PRK09564 coenzyme A disulfide 57.7 8.3 0.00018 40.5 2.9 24 205-228 1-24 (444)
396 PRK07057 sdhA succinate dehydr 57.7 9.6 0.00021 42.3 3.5 26 205-230 13-38 (591)
397 PRK08020 ubiF 2-octaprenyl-3-m 57.6 11 0.00024 38.7 3.7 28 203-230 4-31 (391)
398 PLN00093 geranylgeranyl diphos 57.5 11 0.00024 40.4 3.8 28 203-230 38-65 (450)
399 PF12831 FAD_oxidored: FAD dep 57.5 9.5 0.00021 40.4 3.3 24 207-230 2-25 (428)
400 PRK05335 tRNA (uracil-5-)-meth 57.5 9.9 0.00021 40.8 3.4 26 205-230 3-28 (436)
401 COG1233 Phytoene dehydrogenase 57.4 9.7 0.00021 41.1 3.4 26 205-230 4-29 (487)
402 TIGR01812 sdhA_frdA_Gneg succi 57.4 9.8 0.00021 41.7 3.5 24 207-230 2-25 (566)
403 PRK08958 sdhA succinate dehydr 57.4 9.5 0.00021 42.3 3.4 26 205-230 8-33 (588)
404 PRK12416 protoporphyrinogen ox 57.4 9.5 0.0002 40.4 3.3 22 206-227 3-24 (463)
405 KOG0399 Glutamate synthase [Am 57.3 11 0.00023 45.0 3.8 27 204-230 1785-1811(2142)
406 PLN03000 amine oxidase 57.1 17 0.00036 42.4 5.4 28 203-230 183-210 (881)
407 TIGR02734 crtI_fam phytoene de 57.1 8.5 0.00018 41.3 2.9 24 207-230 1-24 (502)
408 PRK09310 aroDE bifunctional 3- 56.8 24 0.00051 38.2 6.3 30 201-230 329-358 (477)
409 TIGR01811 sdhA_Bsu succinate d 56.8 8.3 0.00018 42.9 2.9 24 207-230 1-24 (603)
410 KOG0409 Predicted dehydrogenas 56.7 8.4 0.00018 39.4 2.6 98 204-353 35-140 (327)
411 PRK05976 dihydrolipoamide dehy 56.6 11 0.00023 40.3 3.6 27 204-230 4-30 (472)
412 PRK07063 short chain dehydroge 56.6 26 0.00057 33.5 6.0 29 202-230 5-34 (260)
413 PRK12775 putative trifunctiona 56.5 10 0.00022 44.9 3.6 26 205-230 431-456 (1006)
414 COG0287 TyrA Prephenate dehydr 56.5 36 0.00077 34.3 7.1 26 205-230 4-29 (279)
415 KOG0725 Reductases with broad 56.5 46 0.00099 33.2 7.8 30 201-230 5-35 (270)
416 PRK10538 malonic semialdehyde 56.5 17 0.00038 34.6 4.7 25 206-230 2-27 (248)
417 PRK06452 sdhA succinate dehydr 56.4 10 0.00022 41.8 3.5 26 205-230 6-31 (566)
418 PRK08013 oxidoreductase; Provi 56.4 12 0.00026 38.9 3.9 26 205-230 4-29 (400)
419 TIGR03366 HpnZ_proposed putati 56.4 12 0.00026 36.8 3.6 26 204-229 121-146 (280)
420 TIGR03201 dearomat_had 6-hydro 56.3 14 0.00029 37.6 4.1 27 204-230 167-193 (349)
421 PLN02178 cinnamyl-alcohol dehy 56.3 14 0.00029 38.4 4.2 27 204-230 179-205 (375)
422 PRK07573 sdhA succinate dehydr 56.3 10 0.00022 42.5 3.5 26 205-230 36-61 (640)
423 COG2072 TrkA Predicted flavopr 56.3 9.4 0.0002 40.8 3.1 26 204-229 8-33 (443)
424 cd08283 FDH_like_1 Glutathione 56.2 34 0.00074 35.3 7.2 26 205-230 186-212 (386)
425 PRK12935 acetoacetyl-CoA reduc 56.2 30 0.00065 32.7 6.3 28 203-230 5-33 (247)
426 PRK05192 tRNA uridine 5-carbox 56.1 9.8 0.00021 42.6 3.2 26 205-230 5-30 (618)
427 PRK00141 murD UDP-N-acetylmura 56.1 14 0.0003 39.7 4.4 28 203-230 14-41 (473)
428 PRK10157 putative oxidoreducta 56.0 11 0.00024 39.8 3.6 26 205-230 6-31 (428)
429 TIGR01316 gltA glutamate synth 56.0 13 0.00028 39.7 4.0 28 203-230 271-298 (449)
430 PRK12834 putative FAD-binding 55.9 11 0.00025 41.1 3.7 26 205-230 5-30 (549)
431 PRK07804 L-aspartate oxidase; 55.8 11 0.00024 41.2 3.6 26 205-230 17-42 (541)
432 PRK02102 ornithine carbamoyltr 55.8 56 0.0012 33.8 8.5 36 201-236 152-191 (331)
433 TIGR02822 adh_fam_2 zinc-bindi 55.8 17 0.00037 36.7 4.7 27 204-230 166-192 (329)
434 PRK08818 prephenate dehydrogen 55.7 37 0.0008 35.7 7.3 45 299-353 46-97 (370)
435 PLN02568 polyamine oxidase 55.6 12 0.00026 41.2 3.8 24 204-227 5-28 (539)
436 COG1148 HdrA Heterodisulfide r 55.6 11 0.00024 40.9 3.4 26 205-230 125-150 (622)
437 PRK05868 hypothetical protein; 55.5 11 0.00025 38.8 3.5 25 206-230 3-27 (372)
438 PRK07494 2-octaprenyl-6-methox 55.5 12 0.00027 38.3 3.7 27 204-230 7-33 (388)
439 PRK05249 soluble pyridine nucl 55.2 12 0.00026 39.7 3.6 26 205-230 6-31 (461)
440 cd00650 LDH_MDH_like NAD-depen 55.2 23 0.0005 34.8 5.4 21 207-227 1-22 (263)
441 PRK06115 dihydrolipoamide dehy 55.2 12 0.00025 40.1 3.6 25 206-230 5-29 (466)
442 KOG1198 Zinc-binding oxidoredu 55.0 25 0.00054 36.5 5.9 26 205-230 159-186 (347)
443 PRK07803 sdhA succinate dehydr 55.0 11 0.00023 42.2 3.4 26 205-230 9-34 (626)
444 PRK08324 short chain dehydroge 55.0 32 0.00068 38.8 7.1 28 203-230 421-449 (681)
445 COG0771 MurD UDP-N-acetylmuram 55.0 11 0.00024 40.6 3.3 27 204-230 7-33 (448)
446 COG2081 Predicted flavoprotein 54.8 12 0.00027 39.5 3.6 26 205-230 4-29 (408)
447 TIGR00031 UDP-GALP_mutase UDP- 54.8 12 0.00027 39.2 3.6 25 206-230 3-27 (377)
448 PF03486 HI0933_like: HI0933-l 54.7 10 0.00022 40.2 3.0 25 206-230 2-26 (409)
449 PRK07818 dihydrolipoamide dehy 54.6 12 0.00026 39.9 3.5 26 205-230 5-30 (466)
450 PRK01713 ornithine carbamoyltr 54.5 76 0.0016 32.8 9.2 36 201-236 153-192 (334)
451 TIGR01317 GOGAT_sm_gam glutama 54.5 16 0.00034 39.5 4.4 26 205-230 144-169 (485)
452 PRK06179 short chain dehydroge 54.5 47 0.001 31.9 7.5 26 205-230 5-31 (270)
453 PRK06126 hypothetical protein; 54.4 11 0.00024 40.9 3.3 28 203-230 6-33 (545)
454 PRK08132 FAD-dependent oxidore 54.4 15 0.00032 40.0 4.3 27 204-230 23-49 (547)
455 COG3380 Predicted NAD/FAD-depe 54.3 13 0.00028 37.7 3.4 25 206-230 3-27 (331)
456 KOG0023 Alcohol dehydrogenase, 54.3 49 0.0011 34.3 7.5 103 203-353 181-287 (360)
457 PRK07680 late competence prote 54.3 16 0.00035 36.0 4.2 22 206-227 2-23 (273)
458 COG1179 Dinucleotide-utilizing 54.1 11 0.00024 37.4 2.9 28 201-228 27-54 (263)
459 PRK02842 light-independent pro 54.1 1.3E+02 0.0027 32.0 11.1 123 92-230 168-317 (427)
460 PRK06057 short chain dehydroge 54.0 27 0.00059 33.3 5.7 28 203-230 6-34 (255)
461 PRK14694 putative mercuric red 53.9 12 0.00026 40.0 3.4 28 203-230 5-32 (468)
462 PRK06467 dihydrolipoamide dehy 53.8 12 0.00026 40.1 3.4 26 205-230 5-30 (471)
463 cd08293 PTGR2 Prostaglandin re 53.7 25 0.00055 35.1 5.6 26 205-230 156-183 (345)
464 PRK06180 short chain dehydroge 53.7 44 0.00095 32.5 7.1 26 205-230 5-31 (277)
465 COG1004 Ugd Predicted UDP-gluc 53.7 15 0.00032 38.9 3.9 26 205-230 1-26 (414)
466 PRK09078 sdhA succinate dehydr 53.6 12 0.00026 41.6 3.5 26 205-230 13-38 (598)
467 PRK07102 short chain dehydroge 53.6 52 0.0011 31.1 7.5 25 206-230 3-28 (243)
468 cd08231 MDR_TM0436_like Hypoth 53.5 25 0.00054 35.6 5.5 28 203-230 177-205 (361)
469 TIGR02732 zeta_caro_desat caro 53.5 12 0.00025 40.3 3.2 25 206-230 1-25 (474)
470 PF10727 Rossmann-like: Rossma 53.4 7.1 0.00015 34.7 1.3 28 203-230 9-36 (127)
471 PLN02740 Alcohol dehydrogenase 53.4 14 0.00031 38.1 3.8 27 204-230 199-226 (381)
472 PRK10015 oxidoreductase; Provi 53.4 13 0.00029 39.3 3.6 26 205-230 6-31 (429)
473 PRK06483 dihydromonapterin red 53.3 36 0.00078 32.0 6.3 26 205-230 3-29 (236)
474 PRK09496 trkA potassium transp 53.2 57 0.0012 34.2 8.4 29 202-230 229-257 (453)
475 TIGR01377 soxA_mon sarcosine o 53.2 14 0.00029 37.7 3.6 25 206-230 2-26 (380)
476 TIGR00873 gnd 6-phosphoglucona 53.2 14 0.00031 39.9 3.8 24 207-230 2-25 (467)
477 PRK06185 hypothetical protein; 53.1 13 0.00027 38.5 3.3 27 204-230 6-32 (407)
478 TIGR03143 AhpF_homolog putativ 53.0 12 0.00026 41.1 3.3 26 205-230 5-30 (555)
479 PRK05867 short chain dehydroge 53.0 35 0.00076 32.6 6.2 27 204-230 9-36 (253)
480 PRK12837 3-ketosteroid-delta-1 53.0 12 0.00026 40.6 3.3 26 204-230 7-32 (513)
481 PRK06854 adenylylsulfate reduc 52.8 13 0.00028 41.4 3.6 26 205-230 12-39 (608)
482 PRK00421 murC UDP-N-acetylmura 52.8 17 0.00038 38.7 4.4 28 203-230 6-34 (461)
483 PRK10309 galactitol-1-phosphat 52.7 16 0.00034 36.9 3.9 26 204-229 161-186 (347)
484 TIGR03364 HpnW_proposed FAD de 52.7 14 0.00031 37.5 3.6 25 206-230 2-26 (365)
485 COG1249 Lpd Pyruvate/2-oxoglut 52.7 14 0.00031 39.8 3.7 28 203-230 172-199 (454)
486 PRK12842 putative succinate de 52.7 13 0.00029 40.9 3.6 27 204-230 9-35 (574)
487 PRK13977 myosin-cross-reactive 52.6 15 0.00032 40.9 3.9 28 200-227 18-45 (576)
488 PF13738 Pyr_redox_3: Pyridine 52.5 18 0.00039 33.2 4.0 30 201-230 164-193 (203)
489 PRK05671 aspartate-semialdehyd 52.5 25 0.00053 36.4 5.3 25 204-228 4-29 (336)
490 TIGR01532 E4PD_g-proteo D-eryt 52.3 75 0.0016 32.7 8.8 22 206-227 1-22 (325)
491 TIGR01372 soxA sarcosine oxida 52.3 13 0.00027 44.0 3.5 27 204-230 163-189 (985)
492 PRK11259 solA N-methyltryptoph 52.3 14 0.00031 37.4 3.6 26 205-230 4-29 (376)
493 PRK12779 putative bifunctional 52.2 15 0.00033 43.1 4.1 28 203-230 446-473 (944)
494 PTZ00139 Succinate dehydrogena 52.1 13 0.00028 41.5 3.4 26 205-230 30-55 (617)
495 PRK05876 short chain dehydroge 52.0 27 0.00059 34.2 5.4 28 203-230 5-33 (275)
496 PRK01368 murD UDP-N-acetylmura 51.8 16 0.00035 39.2 3.9 26 204-230 6-31 (454)
497 PRK08226 short chain dehydroge 51.7 40 0.00087 32.2 6.4 29 202-230 4-33 (263)
498 PRK06184 hypothetical protein; 51.7 15 0.00033 39.5 3.8 26 205-230 4-29 (502)
499 PRK12481 2-deoxy-D-gluconate 3 51.6 47 0.001 31.8 6.9 28 203-230 7-35 (251)
500 PRK07067 sorbitol dehydrogenas 51.6 53 0.0011 31.3 7.2 27 204-230 6-33 (257)
No 1
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=100.00 E-value=2.4e-102 Score=873.48 Aligned_cols=442 Identities=72% Similarity=1.244 Sum_probs=411.5
Q ss_pred CCCcEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccccccccEEEEecC
Q 012946 2 LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKK 81 (452)
Q Consensus 2 ~~~~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~~~~~diIl~Vke 81 (452)
....+|||+||++++|||||||||++|++|+++||. .+.++|+||+|++|+|+|++|++|||+|++++++||||||||+
T Consensus 3 ~~~~~IgI~kE~~~~~E~RVaLtP~~v~~L~~~G~~-~~~~~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~adiIl~Vke 81 (1042)
T PLN02819 3 LGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQYEDVGCEISEDLSDCGLILGVKQ 81 (1042)
T ss_pred cCCcEEEEEecCCCCCCCccCcCHHHHHHHHHCCCC-CCCCEEEEcCCCCCCCChHHHHHCCCEEECCCCCCCEEEEECC
Confidence 356789999999966999999999999999999941 1235999999999999999999999999998899999999999
Q ss_pred CCcccccCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhc
Q 012946 82 PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNL 161 (452)
Q Consensus 82 p~~~~l~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~ 161 (452)
|+++++++++++++|+|+||+|++|++++++|+++|+|+||||.|+|++|+| |.+||+|||++|++++|+++|+++|.+
T Consensus 82 P~~eell~~~~~i~fs~~~~aq~~n~~ll~~l~~k~it~~ayE~i~~~~G~r-l~~fg~~AG~~g~~~~l~~~g~~~L~~ 160 (1042)
T PLN02819 82 PKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVSLFDYELIVGDHGKR-LVAFGKYAGRAGMIDFFRGLGQRLLSL 160 (1042)
T ss_pred CCHHHhcCCCEEEEEecccccccCCHHHHHHHHHcCCeEEEEeceECCCCCE-EeechHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998888889999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHh
Q 012946 162 GYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFE 241 (452)
Q Consensus 162 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e 241 (452)
++.+|||.++++|+|+|+++++++|++.|++|+.+|+|.+++|++|+|+|+|+||.||+++|..|||+.++|.+|+++.+
T Consensus 161 ~~~~pf~~l~~~~~y~~~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~ 240 (1042)
T PLN02819 161 GYSTPFLSLGSSYMYSSLAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKG 240 (1042)
T ss_pred cCCCcccccccccccCCHHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999998863
Q ss_pred hhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcc
Q 012946 242 KAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRL 321 (452)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~L 321 (452)
.++ + . ....+++++|+|.+..||++++++.++.|+++|||+|||.|.+.|++++++++||||||++|..++|+|
T Consensus 241 ~~~---~-~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~l 314 (1042)
T PLN02819 241 ISQ---N-K--ISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRL 314 (1042)
T ss_pred hhc---C-C--ccccccceeeeeecChHHHhhccCCccccchhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCce
Confidence 210 0 0 111334458999999999999998677999999999999999999999999999999999999999999
Q ss_pred cCHH-HHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcchHHHH
Q 012946 322 LSTQ-QLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEAS 400 (452)
Q Consensus 322 it~e-~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp~~AS 400 (452)
||++ |++.||+|++||+||||||||+||||||+.++|||++|+|.|||.+++.+|++..+||+||||||||++||++||
T Consensus 315 vt~~~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS 394 (1042)
T PLN02819 315 LTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEAS 394 (1042)
T ss_pred eCHHHHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHH
Confidence 9999 777889999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCHHHHhchhhcCCeecCCCCchHHhhhC
Q 012946 401 QHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNS 451 (452)
Q Consensus 401 ~~fs~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~lt~~~~yl~~~~~~ 451 (452)
++||++|+|||..|++.+.....++.|++|+++++|+||++|+||++||+.
T Consensus 395 ~~f~n~llpyv~~la~~g~~~~~~~~l~~a~~~~~G~lT~~~~yi~~~~~~ 445 (1042)
T PLN02819 395 QHFGNILSPFVGSLASMKELAELPSHLRRACIAHRGSLTPLFEYIPRMRNS 445 (1042)
T ss_pred HHHHHHHHHHHHHHHhCCchhccCHHHhcceeeeCCEecCchHHHHHHHhc
Confidence 999999999999999776422679999999999999999999999999985
No 2
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-75 Score=569.71 Aligned_cols=338 Identities=25% Similarity=0.377 Sum_probs=307.2
Q ss_pred cEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEccc---ccc-ccEEEE
Q 012946 5 GVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITSD---LSE-CGLILG 78 (452)
Q Consensus 5 ~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~~---~~~-~diIl~ 78 (452)
|+||+|||+|+ +|+||+|||..|+.|++.|| +|+||.|+| ++|+|++|+++||+|+.+ .|. +|+|+|
T Consensus 1 M~IGvpkEik~-~E~RValtP~~V~~l~~~Gh------eVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvK 73 (371)
T COG0686 1 MRIGVPKEIKN-NENRVALTPASVRELVNHGH------EVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVK 73 (371)
T ss_pred CcccccccccC-CcceeccChHhHHHHHhCCc------EEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEE
Confidence 78999999996 99999999999999999997 999999995 999999999999999954 565 999999
Q ss_pred ecCCCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCcc-ccchhHHHHHHHHHHHHHHHHH
Q 012946 79 IKKPKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRR-LIAFGKFAGRAAIIDLLKGLGQ 156 (452)
Q Consensus 79 Vkep~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~-L~s~~~~AG~~avi~al~~~g~ 156 (452)
||||.+.|. .+++++++|+|+|.+. .+++.+.|+++|+|.|+||.+...+|..| |.+||++||..++. .|+
T Consensus 74 vKEP~~~EY~ylregqiLftyLHLA~--~~~lt~~l~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q-----~Ga 146 (371)
T COG0686 74 VKEPLPSEYPYLREGQILFTYLHLAA--SPELTEALLKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQ-----AGA 146 (371)
T ss_pred ecCCChhhhhhhcCCcEEEEEeeecC--ChHHHHHHHHcCcceEEEEEEEcCCCCCcccchHHHHhhhHHHH-----HHH
Confidence 999999888 8899999999999998 69999999999999999999998888877 69999999999999 699
Q ss_pred HHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE----eC
Q 012946 157 RYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF----VD 232 (452)
Q Consensus 157 ~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v----v~ 232 (452)
.+|.+.++ |++++.+|.| ++.|.||+|+|.|+||..|..+|-.|||.| ++
T Consensus 147 ~~lek~~G-------------------------G~GvllgGvp-GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 147 YYLEKTNG-------------------------GKGVLLGGVP-GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred HHHHhccC-------------------------CceeEecCCC-CCCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 99988776 8999999997 799999999999999999999999999988 66
Q ss_pred CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEecc
Q 012946 233 PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCI 312 (452)
Q Consensus 233 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a 312 (452)
+++|+++-. .++.++++ +++++.+ + ++.++.+|+||+++
T Consensus 201 ~~rl~~ldd-----------~f~~rv~~-------------------------~~st~~~----i-ee~v~~aDlvIgaV 239 (371)
T COG0686 201 IDRLRQLDD-----------LFGGRVHT-------------------------LYSTPSN----I-EEAVKKADLVIGAV 239 (371)
T ss_pred HHHHhhhhH-----------hhCceeEE-------------------------EEcCHHH----H-HHHhhhccEEEEEE
Confidence 778887773 23444222 2334433 2 77888999999999
Q ss_pred ccCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCc
Q 012946 313 YWEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNL 391 (452)
Q Consensus 313 ~~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnL 391 (452)
++|+ ++|+|+|+||+++||||+ |||||+||+|||||+ +|+|||++|+|..+ ||.||||.|+
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGs----VivDVAiDqGGc~Et-~~~TTh~~PtY~~~-------------gvvhY~VaNm 301 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGS----VIVDVAIDQGGCFET-SHPTTHDDPTYEVD-------------GVVHYGVANM 301 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCc----EEEEEEEcCCCceec-cccccCCCCceeec-------------CEEEEecCCC
Confidence 9996 999999999999999999 999999999999999 69999999999975 9999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhcccccc--cCCHHHHhchhhcCCeecCC
Q 012946 392 PTEFPKEASQHFGGLLSQFIGSLASVADIA--KLPGNLRRACIAHGGALTSL 441 (452)
Q Consensus 392 Ps~lp~~AS~~fs~~l~~~l~~l~~~~~~~--~~~~~l~~a~i~~~G~lt~~ 441 (452)
|+.+||++|+++++..+||+..+++.+..+ ..|+.|+.++.+++|++|++
T Consensus 302 PgaVprTst~AL~nat~py~l~la~~G~~~a~~~n~~l~~Gln~~~G~vt~~ 353 (371)
T COG0686 302 PGAVPRTSTQALTNATLPYILQLADKGLLKALKDNPALAKGLNTYNGKVTNE 353 (371)
T ss_pred CccccchhHHHhhhcchHHHHHHhcchHHHHhhcCHHHhccchhhcceeccH
Confidence 999999999999999999999999988544 67999999999999999974
No 3
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=100.00 E-value=2.4e-72 Score=593.49 Aligned_cols=352 Identities=22% Similarity=0.284 Sum_probs=291.2
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEccc--cccccEEEEecC
Q 012946 6 VVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITSD--LSECGLILGIKK 81 (452)
Q Consensus 6 ~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~~--~~~~diIl~Vke 81 (452)
+|||+||++ +|||||||||++|++|+++| ++|+||+||| ++|+|++|++|||+|+++ +|+||||+|||+
T Consensus 1 ~IGvpkE~~-~~E~RVAltP~~v~~L~k~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~ 73 (511)
T TIGR00561 1 KIGVPRESL-DNECRVAATPKTVQQLLKLG------FDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNA 73 (511)
T ss_pred CEEEecCCC-CCCeeeccCHHHHHHHHhCC------CEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCC
Confidence 489999999 59999999999999999999 5999999997 999999999999999965 568999999999
Q ss_pred CCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeeccccc---CCCccccchhHHHHHHHHHHHHHHHHHH
Q 012946 82 PKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGN---QGKRRLIAFGKFAGRAAIIDLLKGLGQR 157 (452)
Q Consensus 82 p~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~---~g~~~L~s~~~~AG~~avi~al~~~g~~ 157 (452)
|+++|+ .+++++++|||+||+| |++++++++++|+|+|+||.|+|. |.++.|++|+++|||+||++|.+++|++
T Consensus 74 P~~~e~~~l~~g~tli~~l~p~~--n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~lgr~ 151 (511)
T TIGR00561 74 PSDAEIAELPAGKALVSFIWPAQ--NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEFGRF 151 (511)
T ss_pred CCHHHHHhcCCCCEEEEEcCccC--CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHhhhh
Confidence 999888 8888999999999999 999999999999999999988864 5667689999999999999999999975
Q ss_pred HhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE-e-C--C
Q 012946 158 YLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF-V-D--P 233 (452)
Q Consensus 158 ~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v-v-~--~ 233 (452)
+ . ++ . +++| +++|.+|+|+|+|++|+.|+.+++++|+.| + + +
T Consensus 152 ~-~-g~-----~------------------------taag---~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 152 F-T-GQ-----I------------------------TAAG---KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred c-C-Cc-----e------------------------ecCC---CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3 2 22 1 2333 567999999999999999999999999976 2 2 3
Q ss_pred CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccc
Q 012946 234 SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIY 313 (452)
Q Consensus 234 ~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~ 313 (452)
+++++.. .++.+ +. .++ ..+..++.++|+++-.....+. +...+.+.++.+||+|||++
T Consensus 198 ~rle~a~------------~lGa~---~v--~v~---~~e~g~~~~gYa~~~s~~~~~~-~~~~~~e~~~~~DIVI~Tal 256 (511)
T TIGR00561 198 EVKEQVQ------------SMGAE---FL--ELD---FKEEGGSGDGYAKVMSEEFIAA-EMELFAAQAKEVDIIITTAL 256 (511)
T ss_pred HHHHHHH------------HcCCe---EE--ecc---ccccccccccceeecCHHHHHH-HHHHHHHHhCCCCEEEECcc
Confidence 3333333 23443 11 222 2344566679998521111110 11223677889999999999
Q ss_pred cCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcC
Q 012946 314 WEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLP 392 (452)
Q Consensus 314 ~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLP 392 (452)
||+ ++|+|+|++|++.||||+ ||||||||+|||||+ ++|| |+|+. ++||+|||++|||
T Consensus 257 ipG~~aP~Lit~emv~~MKpGs----vIVDlA~d~GGn~E~-t~p~----~~~~~------------~~GV~~~gv~nlP 315 (511)
T TIGR00561 257 IPGKPAPKLITEEMVDSMKAGS----VIVDLAAEQGGNCEY-TKPG----EVYTT------------ENQVKVIGYTDLP 315 (511)
T ss_pred cCCCCCCeeehHHHHhhCCCCC----EEEEeeeCCCCCEEE-ecCc----eEEEe------------cCCEEEEeeCCcc
Confidence 996 799999999999999999 999999999999999 5765 57775 3589999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhcc--cccc--cCCHHHHhchhhcCCeecCCC
Q 012946 393 TEFPKEASQHFGGLLSQFIGSLASV--ADIA--KLPGNLRRACIAHGGALTSLY 442 (452)
Q Consensus 393 s~lp~~AS~~fs~~l~~~l~~l~~~--~~~~--~~~~~l~~a~i~~~G~lt~~~ 442 (452)
++||++||++||+|++|||..|.++ +.+. ..|+++++++++++|++|++.
T Consensus 316 s~~p~~AS~l~s~nl~~~l~~l~~~~~~~~~~d~~d~vlr~~~v~~~G~it~~~ 369 (511)
T TIGR00561 316 SRLPTQSSQLYGTNLVNLLKLLCKEKDGNIKVDFEDVVIRGVTVSREGEITWPP 369 (511)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCcccccccCcCChHHhcCeEEECCEEeCCC
Confidence 9999999999999999999999843 3333 469999999999999999864
No 4
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=100.00 E-value=2e-69 Score=556.66 Aligned_cols=338 Identities=25% Similarity=0.332 Sum_probs=285.9
Q ss_pred cEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEccc---cccccEEEEe
Q 012946 5 GVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITSD---LSECGLILGI 79 (452)
Q Consensus 5 ~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~~---~~~~diIl~V 79 (452)
|+|||+||+++ +||||||||++|++|+++|| +|+||+|+| ++|+|++|++|||+|+++ +++||||++|
T Consensus 1 m~igi~~E~~~-~E~Rval~P~~v~~l~~~g~------~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~~dii~~V 73 (370)
T TIGR00518 1 MRIGVPKEIKN-NEFRVALTPAGVAELTSRGH------EVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAELVLKV 73 (370)
T ss_pred CEEEEEccCCC-CCceecCCHHHHHHHHhCCC------EEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhcCCEEEEe
Confidence 78999999995 99999999999999999995 999999996 999999999999999864 3579999999
Q ss_pred cCCCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCC-ccccchhHHHHHHHHHHHHHHHHHH
Q 012946 80 KKPKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGK-RRLIAFGKFAGRAAIIDLLKGLGQR 157 (452)
Q Consensus 80 kep~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~-~~L~s~~~~AG~~avi~al~~~g~~ 157 (452)
|+|..+++ ..++++++|+|+|+++ |++++++++++++|+|+||.|++.+|. +.|++|+++|||+|+++|.+.+.+.
T Consensus 74 k~p~~~~~~~~~~g~~l~~~~~~a~--~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~aa~~~~~~ 151 (370)
T TIGR00518 74 KEPLPEEYGYLRHGQILFTYLHLAA--ERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLEKT 151 (370)
T ss_pred CCCCHHHHhhcCCCcEEEEEeccCC--CHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHHHHHhHhh
Confidence 99998887 8888999999999997 899999999999999999999998755 4489999999999999755555542
Q ss_pred HhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eC--C
Q 012946 158 YLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VD--P 233 (452)
Q Consensus 158 ~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~--~ 233 (452)
+ | |++++..|+ ++++|.+|+|+|+|++|++|+++|+++|+.| ++ +
T Consensus 152 -----~--~-----------------------g~~~~~~~~-~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 152 -----Q--G-----------------------GRGVLLGGV-PGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred -----c--C-----------------------CcceeecCC-CCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 1 1 444444554 3789999999999999999999999999976 33 2
Q ss_pred CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccc
Q 012946 234 SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIY 313 (452)
Q Consensus 234 ~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~ 313 (452)
++++++.+. ++.. +. . .+.++++ +.+.++++||||||+.
T Consensus 201 ~~~~~l~~~-----------~g~~---v~---~-------------------~~~~~~~-----l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 201 DRLRQLDAE-----------FGGR---IH---T-------------------RYSNAYE-----IEDAVKRADLLIGAVL 239 (370)
T ss_pred HHHHHHHHh-----------cCce---eE---e-------------------ccCCHHH-----HHHHHccCCEEEEccc
Confidence 333444321 1211 10 0 0011111 2667889999999999
Q ss_pred cCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcC
Q 012946 314 WEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLP 392 (452)
Q Consensus 314 ~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLP 392 (452)
|++ +.|.||++++++.|++++ +|+|++||+|||||+ +++||+++|+|..+ ||+|||+||||
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g~----vIvDva~d~GG~~e~-~~~t~~d~p~~~~~-------------Gv~~~~v~nlP 301 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPGA----VIVDVAIDQGGCVET-SRPTTHDQPTYAVH-------------DVVHYCVANMP 301 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCCC----EEEEEecCCCCCccC-CcCCCCCCCEEEEC-------------CeEEEEeCCcc
Confidence 975 789999999999999999 999999999999998 79999999999864 99999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhcccccc--cCCHHHHhchhhcCCeecCC
Q 012946 393 TEFPKEASQHFGGLLSQFIGSLASVADIA--KLPGNLRRACIAHGGALTSL 441 (452)
Q Consensus 393 s~lp~~AS~~fs~~l~~~l~~l~~~~~~~--~~~~~l~~a~i~~~G~lt~~ 441 (452)
+.||++||++||++|+|||..|++++.++ ..|++|++++++++|+++++
T Consensus 302 ~~~p~~aS~~~~~~l~~~l~~~~~~g~~~~~~~d~~~~~~~~~~~G~~~~~ 352 (370)
T TIGR00518 302 GAVPKTSTYALTNATMPYVLELANHGWRAACRSNPALAKGLNTHEGALLSE 352 (370)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcccccccccChHHhcCeEEeCCEEcCH
Confidence 99999999999999999999999876544 56999999999999999875
No 5
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=100.00 E-value=8.6e-66 Score=545.11 Aligned_cols=353 Identities=23% Similarity=0.281 Sum_probs=287.0
Q ss_pred cEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEccc--cccccEEEEec
Q 012946 5 GVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITSD--LSECGLILGIK 80 (452)
Q Consensus 5 ~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~~--~~~~diIl~Vk 80 (452)
|+|||+||++ +|||||||||++|++|+++| ++|+||+||| ++|+|++|++|||+|+++ +++||||+|||
T Consensus 1 m~IGipkE~~-~~E~RValtP~~v~~L~~~G------~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV~ 73 (509)
T PRK09424 1 MRIGIPRERL-PGETRVAATPKTVEQLLKLG------FEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKVN 73 (509)
T ss_pred CeEEEecCCC-CCCeEeccCHHHHHHHHHCC------CEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEeC
Confidence 7899999999 69999999999999999999 5999999997 999999999999999865 67899999999
Q ss_pred CCCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccc---cCCCccccchhHHHHHHHHHHHHHHHHH
Q 012946 81 KPKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEG---NQGKRRLIAFGKFAGRAAIIDLLKGLGQ 156 (452)
Q Consensus 81 ep~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~---~~g~~~L~s~~~~AG~~avi~al~~~g~ 156 (452)
+|+++|+ .+++++++|||+|+++ |++++++++++|+|+|+||.|+| .|.++.|++|+++|||+|+++|.+.+++
T Consensus 74 ~P~~~e~~~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~~~~~ 151 (509)
T PRK09424 74 APSDDEIALLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAHEFGR 151 (509)
T ss_pred CCCHHHHHhcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHHHhcc
Confidence 9999888 8888999999999998 89999999999999999999996 4667778999999999999987666665
Q ss_pred HHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE----eC
Q 012946 157 RYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF----VD 232 (452)
Q Consensus 157 ~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v----v~ 232 (452)
. +|++.+ ++| .++|.+|+|+|+|++|++|+.+|+.+||+| ++
T Consensus 152 ~-------~~g~~t------------------------aaG---~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 152 F-------FTGQIT------------------------AAG---KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred c-------CCCcee------------------------ccC---CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2 233332 343 568999999999999999999999999977 33
Q ss_pred CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEecc
Q 012946 233 PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCI 312 (452)
Q Consensus 233 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a 312 (452)
++++++.. ++|.+ +. .++. .+.....++|+++.-....+...+.| .+.++.+||+|+|+
T Consensus 198 ~~rle~ae------------slGA~---~v--~i~~---~e~~~~~~gya~~~s~~~~~~~~~~~-~~~~~gaDVVIeta 256 (509)
T PRK09424 198 PEVAEQVE------------SMGAE---FL--ELDF---EEEGGSGDGYAKVMSEEFIKAEMALF-AEQAKEVDIIITTA 256 (509)
T ss_pred HHHHHHHH------------HcCCe---EE--Eecc---ccccccccchhhhcchhHHHHHHHHH-HhccCCCCEEEECC
Confidence 44445444 34554 21 1221 12222345777742111000001122 55567899999999
Q ss_pred ccCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCc
Q 012946 313 YWEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNL 391 (452)
Q Consensus 313 ~~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnL 391 (452)
.||+ ++|++|++++++.||+|+ +|+|++||.|||||+ +.+ .+|++.. ++|+|+|++|+
T Consensus 257 g~pg~~aP~lit~~~v~~mkpGg----vIVdvg~~~GG~~e~-t~~---~~~v~~~-------------~gVti~Gv~n~ 315 (509)
T PRK09424 257 LIPGKPAPKLITAEMVASMKPGS----VIVDLAAENGGNCEL-TVP---GEVVVTD-------------NGVTIIGYTDL 315 (509)
T ss_pred CCCcccCcchHHHHHHHhcCCCC----EEEEEccCCCCCccc-ccC---ccceEeE-------------CCEEEEEeCCC
Confidence 9996 799999999999999999 999999999999999 343 4566653 48999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhh--cccccc--cCCHHHHhchhhcCCeecCCC
Q 012946 392 PTEFPKEASQHFGGLLSQFIGSLA--SVADIA--KLPGNLRRACIAHGGALTSLY 442 (452)
Q Consensus 392 Ps~lp~~AS~~fs~~l~~~l~~l~--~~~~~~--~~~~~l~~a~i~~~G~lt~~~ 442 (452)
|+++|++||++|+++++++++.+. +++.+. ..|+++++++++++|+++++-
T Consensus 316 P~~~p~~As~lla~~~i~l~~lIt~~~~g~~~~~~~d~vi~~~~~~~~G~i~~~~ 370 (509)
T PRK09424 316 PSRLPTQSSQLYGTNLVNLLKLLCPEKDGNIVVDFDDVVIRGVTVVRDGEITWPP 370 (509)
T ss_pred chhHHHHHHHHHHhCCccHHHHhccCccchhhhcccCHHHhcCeEEECCEEecCC
Confidence 999999999999999999998887 344444 469999999999999999864
No 6
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.6e-65 Score=495.61 Aligned_cols=340 Identities=20% Similarity=0.258 Sum_probs=294.5
Q ss_pred EEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEcc--ccccccEEEEecC
Q 012946 6 VVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITS--DLSECGLILGIKK 81 (452)
Q Consensus 6 ~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~--~~~~~diIl~Vke 81 (452)
+||++||+. ++|+||++||+.|++|.++| +.|.||+|+| +.|+|++|+++||+|.. ..+++|+|+||.+
T Consensus 1 ~igvp~E~~-~~E~Rva~tP~tv~~l~~~G------~~v~ve~gaG~~a~~~D~~y~aaGa~i~~~~~~~~adiilKv~~ 73 (356)
T COG3288 1 RIGVPKESL-ANETRVAATPETVKKLVKLG------FDVVVESGAGLRASFPDAAYVAAGATIGAADAVWQADIILKVRA 73 (356)
T ss_pred Ccccccccc-CCCceeecCHHHHHHHHhCC------cEEEEecCCccccCCChHHHHHhccEeehhhhhccCCeeeeecC
Confidence 489999999 59999999999999999999 5999999997 99999999999999993 2468999999999
Q ss_pred CCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeeccccc---CCCccccchhHHHHHHHHHHHHHHHHHH
Q 012946 82 PKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGN---QGKRRLIAFGKFAGRAAIIDLLKGLGQR 157 (452)
Q Consensus 82 p~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~---~g~~~L~s~~~~AG~~avi~al~~~g~~ 157 (452)
|...++ ..+.+..+++++++.+ |.+++.+|..++++.|.+|.++|. +-+++|+|+.|++||++++.|+..++++
T Consensus 74 p~a~e~~~~~~ga~lv~~l~p~~--~~~~v~~La~~~La~fag~~Vpr~vraqlhdpLsS~aNaigy~aVi~Aa~a~~rf 151 (356)
T COG3288 74 PSAAEIALLKEGATLVSFLNPYQ--NDELVFALAIFVLAAFAGEAVPRIVRAQLHDPLSSQANAIGYIAVIGAALAYGRF 151 (356)
T ss_pred CchhhhhhcccchhhhhhcCccc--ChHHHHHHHHHHHHHHHHhhhccccchhhccHHHhhhhhhhHHHHHHHHHHhhhc
Confidence 999888 6688999999999999 899999999999999999999875 6778899999999999999999988873
Q ss_pred HhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE----eCC
Q 012946 158 YLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF----VDP 233 (452)
Q Consensus 158 ~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v----v~~ 233 (452)
+||++|+ +| +++|++++++|.|++|++|+.++.++|+.| ++|
T Consensus 152 -------fpm~~TA------------------------ag---tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm 197 (356)
T COG3288 152 -------FPMQITA------------------------AG---TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRM 197 (356)
T ss_pred -------ccchhhh------------------------cc---cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhh
Confidence 6877764 43 789999999999999999999999999998 566
Q ss_pred CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCccc---ccccCcCCcCcchHhhhcCCCcEEEe
Q 012946 234 SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKN---DYYEHPEQYNPIFHEKIAPYASAIIN 310 (452)
Q Consensus 234 ~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~e~y~~~f~~~~~~~~DIvIn 310 (452)
...+|+. +.+++ +.. + + ..++.+||+|+ ||...+ ..+.+++++..|||||
T Consensus 198 ~~Keqv~------------s~Ga~---f~~--~---~---~ee~~gGYAk~ms~~~~~~q----~~~~a~~~~~~DivIT 250 (356)
T COG3288 198 FKKEQVE------------SLGAK---FLA--V---E---DEESAGGYAKEMSEEFIAKQ----AELVAEQAKEVDIVIT 250 (356)
T ss_pred HHhhhhh------------hcccc---ccc--c---c---ccccCCCccccCCHHHHHHH----HHHHHHHhcCCCEEEE
Confidence 6666665 45665 221 1 1 12256799995 454443 3445889999999999
Q ss_pred ccccCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeC
Q 012946 311 CIYWEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVD 389 (452)
Q Consensus 311 ~a~~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vd 389 (452)
||++|+ ++|+|||++|+++||||| ||||+++.+|||||. ++| + -+++. |||+++|..
T Consensus 251 TAlIPGrpAP~Lvt~~mv~sMkpGS----ViVDlAa~~GGNce~-t~p---g-~~v~~-------------~gV~iig~~ 308 (356)
T COG3288 251 TALIPGRPAPKLVTAEMVASMKPGS----VIVDLAAETGGNCEL-TEP---G-KVVTK-------------NGVKIIGYT 308 (356)
T ss_pred ecccCCCCCchhhHHHHHHhcCCCc----EEEEehhhcCCCccc-ccC---C-eEEEe-------------CCeEEEeec
Confidence 999996 899999999999999999 999999999999999 333 4 35553 699999999
Q ss_pred CcCCcchHHHHHHHHHHHHHHHHHhhcccccccCCHHHHhchhhcCCe
Q 012946 390 NLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGA 437 (452)
Q Consensus 390 nLPs~lp~~AS~~fs~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~ 437 (452)
|||++||.+||++|++||++||..|.+++.....|++++.+++|++|+
T Consensus 309 nlp~r~a~~aS~LYa~Nl~~~l~ll~~~~~~~~~D~vv~~~~vt~~g~ 356 (356)
T COG3288 309 NLPGRLAAQASQLYATNLVNLLKLLCKKKDAIFDDEVVRAVTVTRDGE 356 (356)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHHHhccCCCcchHHHHhhheeecCCC
Confidence 999999999999999999999999987755337799999999999995
No 7
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=100.00 E-value=4.6e-33 Score=249.13 Aligned_cols=126 Identities=33% Similarity=0.493 Sum_probs=101.5
Q ss_pred EEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCC--CCCCchhhhhcCcEEccc---c-ccccEEEEecC
Q 012946 8 GILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTK--RIFNDAQYEEAGCEITSD---L-SECGLILGIKK 81 (452)
Q Consensus 8 Gi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag--~~FsD~eY~~aGa~I~~~---~-~~~diIl~Vke 81 (452)
||+||++ +||+||||||++|++|+++|| +|+||+|+| ++|+|++|++|||+|+++ + ++|||||+||+
T Consensus 1 Gi~kE~~-~~E~RVal~P~~v~~L~~~G~------~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~ 73 (136)
T PF05222_consen 1 GIPKESK-PGERRVALTPEDVKKLVKLGH------EVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKP 73 (136)
T ss_dssp EE-B--S-TT---BSS-HHHHHHHHHTTS------EEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-
T ss_pred CccCcCC-CCCcEecccHHHHHHHHhCCC------EEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECC
Confidence 8999988 699999999999999999994 999999996 999999999999999974 3 47999999999
Q ss_pred CCcccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeeccccc---CCCccccchhHHH
Q 012946 82 PKLEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGN---QGKRRLIAFGKFA 142 (452)
Q Consensus 82 p~~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~---~g~~~L~s~~~~A 142 (452)
|+++++ .+++++++|||+|+.+ |+++++.|+++|+|+||||.|+|. |.++.|++|+++|
T Consensus 74 p~~~e~~~l~~g~~li~~~~~~~--~~~~~~~l~~~~it~~a~E~ipr~s~aq~md~lss~a~iA 136 (136)
T PF05222_consen 74 PSEEELALLKPGQTLIGFLHPAQ--NKELLEALAKKGITAFALELIPRISRAQSMDVLSSQANIA 136 (136)
T ss_dssp --GGGGGGS-TTCEEEEE--GGG--HHHHHHHHHHCTEEEEEGGGSBSSGGGGGGTHHHHHHHHH
T ss_pred CCHHHHhhcCCCcEEEEeecccc--CHHHHHHHHHCCCEEEEhhhCcCCcCCcCcccchhhhccC
Confidence 999888 7888999999999997 999999999999999999999996 3455578888876
No 8
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=99.97 E-value=1.1e-33 Score=261.21 Aligned_cols=153 Identities=34% Similarity=0.524 Sum_probs=114.8
Q ss_pred hcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCCh----hhHHhhhCCCCCccccCCCCceeEEEeeeeeccc
Q 012946 195 TEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRL----PELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSEN 270 (452)
Q Consensus 195 ~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l----~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d 270 (452)
..|.+++++|++|+|+|+|+||+||+++|++||++|+.++.. ++.. ..... .+.+...+
T Consensus 11 ~~~~~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~------------~~~~~-----~i~~~~~~ 73 (168)
T PF01262_consen 11 LLGGPGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLE------------SLGAY-----FIEVDYED 73 (168)
T ss_dssp EECTTTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH------------HTTTE-----ESEETTTT
T ss_pred eccCCCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhh------------cccCc-----eEEEcccc
Confidence 334457999999999999999999999999999998544433 3332 11221 13343333
Q ss_pred ccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEe-ccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCC
Q 012946 271 MVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIIN-CIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEG 349 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn-~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG 349 (452)
..++. .|++++|+++|+.|++.| .+.++.+|+||+ +.+|.+++|+|||++|+++||||+ ||+|||||+||
T Consensus 74 ~~~~~----~~~~~~~~~~~~~~~~~f-~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gs----vIvDis~D~gG 144 (168)
T PF01262_consen 74 HLERK----DFDKADYYEHPESYESNF-AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGS----VIVDISCDQGG 144 (168)
T ss_dssp TTTSB-----CCHHHCHHHCCHHHHHH-HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTE----EEEETTGGGT-
T ss_pred ccccc----ccchhhhhHHHHHhHHHH-HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCc----eEEEEEecCCC
Confidence 33333 399999999999999999 666778899885 555668999999999999999999 99999999999
Q ss_pred CeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEe
Q 012946 350 SIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSV 387 (452)
Q Consensus 350 ~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~ 387 (452)
|||| +++||+++|+|.++ ||+|||
T Consensus 145 ~iE~-t~~~T~~~p~~~~~-------------GV~~~~ 168 (168)
T PF01262_consen 145 SIET-TRPTTHADPTYEKN-------------GVTHYG 168 (168)
T ss_dssp SBTT-EETTBTTCEEEEET-------------TEEEEE
T ss_pred CcCc-cccCCCCCCeEEeC-------------CEEEEC
Confidence 9999 69999999999975 999997
No 9
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.92 E-value=6.4e-24 Score=213.03 Aligned_cols=247 Identities=18% Similarity=0.176 Sum_probs=178.1
Q ss_pred HHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccc----cccccEEEEecCCC------------------
Q 012946 26 SHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSD----LSECGLILGIKKPK------------------ 83 (452)
Q Consensus 26 ~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~----~~~~diIl~Vkep~------------------ 83 (452)
+.+++|.++| ++|+| .+|+|++|..+|++++++ +.++|+|+.+-+++
T Consensus 16 ~~~~~l~~~G------~~v~~-----~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~ 84 (296)
T PRK08306 16 ELIRKLVELG------AKVSL-----VGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLT 84 (296)
T ss_pred HHHHHHHHCC------CEEEE-----EeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcch
Confidence 5689999999 59999 889999999999999854 35799999995552
Q ss_pred cccc-cCCCce-EEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhc
Q 012946 84 LEMI-LPDRAY-AFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNL 161 (452)
Q Consensus 84 ~~~l-~~~~~~-~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~ 161 (452)
.+.+ .+++++ +|+|...+. +-+.+.++|++++++... +..+.+.+++...| ++.+++ +.+
T Consensus 85 ~~~l~~l~~~~~v~~G~~~~~------~~~~~~~~gi~~~~~~~~---~~~~~~ns~~~aeg--av~~a~-----~~~-- 146 (296)
T PRK08306 85 EELLELTPEHCTIFSGIANPY------LKELAKETNRKLVELFER---DDVAILNSIPTAEG--AIMMAI-----EHT-- 146 (296)
T ss_pred HHHHHhcCCCCEEEEecCCHH------HHHHHHHCCCeEEEEecc---chhhhhccHhHHHH--HHHHHH-----HhC--
Confidence 2334 555666 666666433 445577999999865544 33443566766666 444321 100
Q ss_pred CCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE-e-CCC--Chh
Q 012946 162 GYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF-V-DPS--RLP 237 (452)
Q Consensus 162 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v-v-~~~--~l~ 237 (452)
+ .++.+.+|+|+|+|++|+.++..|+++|++| + +.. +.+
T Consensus 147 -----------------------------------~--~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 147 -----------------------------------P--ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred -----------------------------------C--CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 0 2556899999999999999999999999977 2 222 222
Q ss_pred hHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCC
Q 012946 238 ELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQ 317 (452)
Q Consensus 238 ~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~ 317 (452)
+.. +.+.+ + + .| .. +.+.++.+|+||||+
T Consensus 190 ~~~------------~~G~~---~----~-------------~~-------------~~-l~~~l~~aDiVI~t~----- 218 (296)
T PRK08306 190 RIT------------EMGLS---P----F-------------HL-------------SE-LAEEVGKIDIIFNTI----- 218 (296)
T ss_pred HHH------------HcCCe---e----e-------------cH-------------HH-HHHHhCCCCEEEECC-----
Confidence 222 11211 0 0 00 01 255678899999996
Q ss_pred CCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcc-h
Q 012946 318 FPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEF-P 396 (452)
Q Consensus 318 ~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~l-p 396 (452)
.+.++++++++.|++++ +|+|++++.|| +++. ... .+||++++++|||+.+ |
T Consensus 219 p~~~i~~~~l~~~~~g~----vIIDla~~pgg-td~~---------~a~-------------~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 219 PALVLTKEVLSKMPPEA----LIIDLASKPGG-TDFE---------YAE-------------KRGIKALLAPGLPGKVAP 271 (296)
T ss_pred ChhhhhHHHHHcCCCCc----EEEEEccCCCC-cCee---------ehh-------------hCCeEEEEECCCCccCCH
Confidence 24578999999999999 99999999998 5551 112 3599999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 012946 397 KEASQHFGGLLSQFIGSLAS 416 (452)
Q Consensus 397 ~~AS~~fs~~l~~~l~~l~~ 416 (452)
.+||++|++++.++|..+..
T Consensus 272 ~ta~~~~~~~i~~~l~~~~~ 291 (296)
T PRK08306 272 KTAGQILANVLSQLLAEDLI 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999977754
No 10
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.16 E-value=2.3e-09 Score=107.47 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE-eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF-VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
++...+|+|+|.|.+|+..+..++.+|++| +..+..+...+. ...+..
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~---------~~~g~~---------------------- 196 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI---------TEMGLI---------------------- 196 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---------HHCCCe----------------------
Confidence 455689999999999999999999999977 322222211100 000100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCC-eeeecccc
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGS-IEILNQTT 358 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~-iE~~~~~T 358 (452)
.+. + +. +.+.++.+|+||||.-. .+++++.++.|+++. +|+|+++++||. ++.
T Consensus 197 ~~~----------~-~~-l~~~l~~aDiVint~P~-----~ii~~~~l~~~k~~a----liIDlas~Pg~tdf~~----- 250 (287)
T TIGR02853 197 PFP----------L-NK-LEEKVAEIDIVINTIPA-----LVLTADVLSKLPKHA----VIIDLASKPGGTDFEY----- 250 (287)
T ss_pred eec----------H-HH-HHHHhccCCEEEECCCh-----HHhCHHHHhcCCCCe----EEEEeCcCCCCCCHHH-----
Confidence 000 0 11 14567889999999722 267899999999998 999999999883 332
Q ss_pred cCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcc-hHHHHHHHHHHHHHHHH
Q 012946 359 TIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEF-PKEASQHFGGLLSQFIG 412 (452)
Q Consensus 359 t~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~l-p~~AS~~fs~~l~~~l~ 412 (452)
.. ..|+.++..++||..+ |++|.+.+++.+..+|.
T Consensus 251 ------Ak-------------~~G~~a~~~~glPg~~ap~ta~~i~~~~~~~~~~ 286 (287)
T TIGR02853 251 ------AK-------------KRGIKALLAPGLPGIVAPKTAGKILANVLSELLL 286 (287)
T ss_pred ------HH-------------HCCCEEEEeCCCCcccCchhHHHHHHHHHHHHhh
Confidence 11 3499999999999999 99999999999988774
No 11
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=99.09 E-value=2.7e-12 Score=130.60 Aligned_cols=332 Identities=14% Similarity=0.047 Sum_probs=223.3
Q ss_pred EEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEcccc-c---cccEEEEecCCC
Q 012946 8 GILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDL-S---ECGLILGIKKPK 83 (452)
Q Consensus 8 Gi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~~-~---~~diIl~Vkep~ 83 (452)
.+++|++ +.|-|++|+|-.++.|+.+| +..++|.+-.+.|-|.||++.|..+++.- + ..+++.|+++.+
T Consensus 61 ~L~~~v~-~~D~viSLlP~t~h~lVaK~------~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~ 133 (445)
T KOG0172|consen 61 ALRKEVK-PLDLVISLLPYTFHPLVAKG------CIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMP 133 (445)
T ss_pred HHHhhhc-ccceeeeeccchhhHHHHHH------HHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhh
Confidence 4578899 69999999999999999999 69999999999999999999999999753 2 578999999988
Q ss_pred cccc-cCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhcC
Q 012946 84 LEMI-LPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLG 162 (452)
Q Consensus 84 ~~~l-~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~~ 162 (452)
+-+. -..+.+.-|-|-++.|-+..+.....-.-....||||-+-..++.| .++++..+|.++-+.+- -|...... .
T Consensus 134 a~~ti~~vh~hgg~i~sf~sycGglpape~s~nplgykfsws~~gvl~a~r-nsAky~~~Gkiv~v~g~-~~~~~~~~-~ 210 (445)
T KOG0172|consen 134 AMKTIDLVHEHGGKIKSFKSYCGGLPAPERSNNPLGYKFSWSPLGVLLALR-NSAKYYKNGKIVEVDGG-DLADTATH-Y 210 (445)
T ss_pred hhccchHHHhhcceeeehhhhcCCccChhhCCCCcceeeccchhhhhhhcc-ccchhccCCeEEEeccc-cHHhhccC-c
Confidence 7443 2222334455555556667888888888889999999997777777 89999999998877544 23332222 2
Q ss_pred CCCCcccccccccCcc----HHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChh
Q 012946 163 YSTPFLTLGAAYMYPS----LAAAKAAIISVGEEIATEGLPSGICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLP 237 (452)
Q Consensus 163 ~~~P~~~~~~~~~~~~----~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~ 237 (452)
...|++. ..-|+| .-+..-.+-+=.+-|..+++ . .--.+.|+|+ |++|+++.+.+..++.. ..
T Consensus 211 ~~~pg~a---l~~yPNrdst~y~evy~I~~ea~tilrgtl--r-yqgf~~~i~aL~~~G~~~~da~~~~~~~-an----- 278 (445)
T KOG0172|consen 211 DFYPGPA---LECYPNRDSTEYSEVYGIPREAKTILRGTL--R-YQGFVLIIGALVRCGLLACDALEKFSIP-AN----- 278 (445)
T ss_pred ccCcccc---ccccCCcchhhHHHHhcchHHHHHHHhccc--c-cccHHHHHHHHHHcCccchhhHhhcCCC-CC-----
Confidence 2234443 345777 32222222211233334432 2 2334555566 99999999998887543 11
Q ss_pred hHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCC
Q 012946 238 ELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQ 317 (452)
Q Consensus 238 ~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~ 317 (452)
...|+..++.-++ .|+. +.+.||.++|.+-..+
T Consensus 279 ----------------------------~L~W~~~~~~~~g-~~~~------------------i~ed~i~~i~~~~~~~ 311 (445)
T KOG0172|consen 279 ----------------------------ILTWKELLTSLGG-PFSE------------------IEEDDIKVICIYLSGK 311 (445)
T ss_pred ----------------------------cccHHHHHHhhcC-CCcC------------------ccHHHHHHHHHHhhcC
Confidence 1123333222111 2221 1234677788887777
Q ss_pred CCcccCHHHHHHhhcCCCCeEEEEEeeecCC---CCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCc
Q 012946 318 FPRLLSTQQLRDLAQKGCPLVGISDLTCDME---GSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTE 394 (452)
Q Consensus 318 ~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~g---G~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~ 394 (452)
.|+.++ .++.+--.+.|++.++|++||.- -.+......|+.|.|+..+.. ..+..+-.....+++|..
T Consensus 312 ~~~~l~--~~e~Lg~~~~k~v~~~~~~~DTl~~~l~~~l~y~~~e~Dmvvl~h~~-------~~~~p~g~~e~~t~~l~~ 382 (445)
T KOG0172|consen 312 DPRILS--TLEWLGLFSDKLVTVRGVSLDTLCPHLEEPLYYVDTEFDMVVLQHKF-------GTEPPEGKVESITHTLVL 382 (445)
T ss_pred ccchhh--hhHhcCCCccccccccCCchhccccccccceeccCCccceeEEEecc-------eeeCCCCceEEeeecHhh
Confidence 774443 23444444678889999999974 234444566777777665321 122344556899999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhcc
Q 012946 395 FPKEASQHFGGLLSQFIGSLASV 417 (452)
Q Consensus 395 lp~~AS~~fs~~l~~~l~~l~~~ 417 (452)
+|+.++..++..++++...|+..
T Consensus 383 yg~~ng~samaktVg~p~ai~~~ 405 (445)
T KOG0172|consen 383 YGRENGESAMAKTVGSPTAIAAK 405 (445)
T ss_pred cCCccchhHHHHhcCchHhhhhh
Confidence 99999999999999999888654
No 12
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.98 E-value=2.2e-05 Score=72.50 Aligned_cols=107 Identities=10% Similarity=0.124 Sum_probs=64.3
Q ss_pred CccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccC
Q 012946 176 YPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSS 253 (452)
Q Consensus 176 ~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~ 253 (452)
|+..+.+.+++++... ++.+ -.+++|+|.|.+|+|-++.|+.+|+.| +..+-++.++..
T Consensus 3 yG~g~S~~d~i~r~t~-~~l~-------Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~----------- 63 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATN-LMLA-------GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA----------- 63 (162)
T ss_dssp HHHHHHHHHHHHHHH--S--T-------TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------
T ss_pred cccchhHHHHHHhcCc-eeeC-------CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------
Confidence 4445566666665422 2333 467999999999999999999999987 233334444411
Q ss_pred CCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcC
Q 012946 254 STKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQK 333 (452)
Q Consensus 254 ~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~g 333 (452)
.. +|.- .. +++.++.+||+|++ ...+.+|+.|+++.||.|
T Consensus 64 ~d------------------------Gf~v-----------~~-~~~a~~~adi~vta----TG~~~vi~~e~~~~mkdg 103 (162)
T PF00670_consen 64 MD------------------------GFEV-----------MT-LEEALRDADIFVTA----TGNKDVITGEHFRQMKDG 103 (162)
T ss_dssp HT------------------------T-EE-----------E--HHHHTTT-SEEEE-----SSSSSSB-HHHHHHS-TT
T ss_pred hc------------------------CcEe-----------cC-HHHHHhhCCEEEEC----CCCccccCHHHHHHhcCC
Confidence 00 1211 01 26678899999998 334568999999999999
Q ss_pred CCCeEEEEEeee
Q 012946 334 GCPLVGISDLTC 345 (452)
Q Consensus 334 s~~l~vIvDvs~ 345 (452)
. +++++..
T Consensus 104 a----il~n~Gh 111 (162)
T PF00670_consen 104 A----ILANAGH 111 (162)
T ss_dssp E----EEEESSS
T ss_pred e----EEeccCc
Confidence 9 7876654
No 13
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.67 E-value=0.00011 Score=68.39 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhH-HhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 200 SGICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPEL-FEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 200 ~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~-~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
..+...+|.|+|.|+.|+..++.++.+|.+| .++...... ... .+ + ..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~-----------~~-----~---~~---------- 82 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE-----------FG-----V---EY---------- 82 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH-----------TT-----E---EE----------
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc-----------cc-----c---ee----------
Confidence 4778899999999999999999999999988 444333222 100 00 0 00
Q ss_pred CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCe
Q 012946 277 SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSI 351 (452)
Q Consensus 277 ~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~i 351 (452)
.. +.+.++.+|||+++.-.....-.+|+++.++.||+|+ ++|.++ .|+-|
T Consensus 83 ------------------~~-l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga----~lvN~a--RG~~v 132 (178)
T PF02826_consen 83 ------------------VS-LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGA----VLVNVA--RGELV 132 (178)
T ss_dssp ------------------SS-HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTE----EEEESS--SGGGB
T ss_pred ------------------ee-hhhhcchhhhhhhhhccccccceeeeeeeeeccccce----EEEecc--chhhh
Confidence 11 2667888999999998877777899999999999999 999877 45444
No 14
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.56 E-value=0.00038 Score=64.78 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
++.-.+|+|+|+|. +|..++..+.+.|+.|. + +.+ .
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-----------------------------v----~~r-~--------- 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-----------------------------V----CHS-K--------- 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-----------------------------E----EEC-C---------
Confidence 67789999999997 69999999988876541 0 110 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +. +.+.++++||||++..- |.+|+.+++ +++. +|+|++.+.
T Consensus 78 -~-------------~~-l~~~l~~aDiVIsat~~----~~ii~~~~~---~~~~----viIDla~pr 119 (168)
T cd01080 78 -T-------------KN-LKEHTKQADIVIVAVGK----PGLVKGDMV---KPGA----VVIDVGINR 119 (168)
T ss_pred -c-------------hh-HHHHHhhCCEEEEcCCC----CceecHHHc---cCCe----EEEEccCCC
Confidence 0 01 25578899999999754 558999986 6677 999999876
No 15
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.53 E-value=0.00088 Score=71.64 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHH
Q 012946 163 YSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELF 240 (452)
Q Consensus 163 ~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~ 240 (452)
.+.|.++++-+..=.-.+.+.-....+-.++...+ ...+.-.+|+|+|.|.+|++.+..|+.+|+.| ++....+...
T Consensus 214 L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~-~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~ 292 (476)
T PTZ00075 214 LLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRAT-DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQ 292 (476)
T ss_pred CCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHH
Confidence 45677766543222222222222223334455443 13677899999999999999999999999987 2222111111
Q ss_pred hhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCc
Q 012946 241 EKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPR 320 (452)
Q Consensus 241 e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~ 320 (452)
.. ..+ |.. .. +.+.++.+||||++. ..+.
T Consensus 293 A~----------~~G-------------------------~~~-----------~~-leell~~ADIVI~at----Gt~~ 321 (476)
T PTZ00075 293 AA----------MEG-------------------------YQV-----------VT-LEDVVETADIFVTAT----GNKD 321 (476)
T ss_pred HH----------hcC-------------------------cee-----------cc-HHHHHhcCCEEEECC----Cccc
Confidence 00 001 100 00 145678899999984 3577
Q ss_pred ccCHHHHHHhhcCCCCeEEEEEeee
Q 012946 321 LLSTQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 321 Lit~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
+|+.++++.||+|. ++++++-
T Consensus 322 iI~~e~~~~MKpGA----iLINvGr 342 (476)
T PTZ00075 322 IITLEHMRRMKNNA----IVGNIGH 342 (476)
T ss_pred ccCHHHHhccCCCc----EEEEcCC
Confidence 99999999999999 8988864
No 16
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.48 E-value=7.1e-05 Score=66.77 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCE-E--eC--CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHT-F--VD--PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPK 275 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~-v--v~--~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~ 275 (452)
++...+|+|+|+|-+|+.++..+..+|+. + ++ .++.+++.+.+ .+.+ + .+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~----------~~~~---~---~~~~------- 65 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF----------GGVN---I---EAIP------- 65 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH----------TGCS---E---EEEE-------
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc----------Cccc---c---ceee-------
Confidence 56789999999999999999999999995 4 22 22345565431 0111 0 0100
Q ss_pred CCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 276 DSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
| +. +.+.++.+||||||.-.+.. ++++++++...+. +.+|+|++ .=.+|+.
T Consensus 66 -----~-------------~~-~~~~~~~~DivI~aT~~~~~---~i~~~~~~~~~~~---~~~v~Dla--~Pr~i~~ 116 (135)
T PF01488_consen 66 -----L-------------ED-LEEALQEADIVINATPSGMP---IITEEMLKKASKK---LRLVIDLA--VPRDIDP 116 (135)
T ss_dssp -----G-------------GG-HCHHHHTESEEEE-SSTTST---SSTHHHHTTTCHH---CSEEEES---SS-SB-T
T ss_pred -----H-------------HH-HHHHHhhCCeEEEecCCCCc---ccCHHHHHHHHhh---hhceeccc--cCCCCCh
Confidence 0 00 13456788999999887644 8999998654321 23899997 3344443
No 17
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00047 Score=69.04 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=59.9
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-++|+|+|.+ .+|+--..++...|+.|. .|.-
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-------------------------------v~hs------------- 184 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVT-------------------------------ICHS------------- 184 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeE-------------------------------EEec-------------
Confidence 4566899999998 899998888888776551 1110
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+. .. +.+.++.+||||+++ ..|.|||.+|+ |+|+ +|||++.++
T Consensus 185 ---------~t----~~-L~~~~~~ADIvI~Av----gk~~lv~~~~v---k~Ga----vVIDVgi~~ 227 (279)
T PRK14178 185 ---------KT----EN-LKAELRQADILVSAA----GKAGFITPDMV---KPGA----TVIDVGINQ 227 (279)
T ss_pred ---------Ch----hH-HHHHHhhCCEEEECC----CcccccCHHHc---CCCc----EEEEeeccc
Confidence 00 00 266788999999999 44589999997 9999 999999997
No 18
>PLN02928 oxidoreductase family protein
Probab=97.39 E-value=0.00055 Score=70.70 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=70.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..++.++.+|..| .++..-++... .++.+ . ....+..+.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-----------~~~~~--------~--~~~~~~~~~- 213 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED-----------GLLIP--------N--GDVDDLVDE- 213 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh-----------hhccc--------c--ccccccccc-
Confidence 566789999999999999999999999987 33321111110 00000 0 000000000
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.. . + .. +.+.++.+|||+++.-....+-.+|+++.++.||+|+ ++|+++
T Consensus 214 -------~~-~---~-~~-L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga----~lINva 262 (347)
T PLN02928 214 -------KG-G---H-ED-IYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGA----LLVNIA 262 (347)
T ss_pred -------cC-c---c-cC-HHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCe----EEEECC
Confidence 00 0 0 11 2678899999999998887788899999999999999 999997
No 19
>PLN00203 glutamyl-tRNA reductase
Probab=97.23 E-value=0.0013 Score=71.34 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=63.9
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCC-EE--eCC--CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPH-TF--VDP--SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa-~v--v~~--~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
+...+|+|+|+|..|..++..+...|+ .+ ++. ++.+++.+. +++. . +.+.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~-----------~~g~--~---i~~~--------- 318 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE-----------FPDV--E---IIYK--------- 318 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-----------hCCC--c---eEee---------
Confidence 668999999999999999999999997 33 222 233444421 1100 0 0000
Q ss_pred CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCC---CCeEEEEEeeecC
Q 012946 277 SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKG---CPLVGISDLTCDM 347 (452)
Q Consensus 277 ~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs---~~l~vIvDvs~D~ 347 (452)
.+ .. ..+.+..+||||+|.. ... .+|+.++++.|.+++ .+-++|||||...
T Consensus 319 ---~~-------------~d-l~~al~~aDVVIsAT~--s~~-pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 319 ---PL-------------DE-MLACAAEADVVFTSTS--SET-PLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred ---cH-------------hh-HHHHHhcCCEEEEccC--CCC-CeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 00 00 1456778999999862 233 488999999986532 2446899999753
No 20
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0019 Score=64.91 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.| .||+-...++.+.||.|. .|.-
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-------------------------------v~hs------------- 189 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-------------------------------VCHI------------- 189 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-------------------------------EEeC-------------
Confidence 4556899999998 899999999988887661 0100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+. .. +.++++.+||||.++ ..|.|++.+|+ |+|+ +|+|++.+.
T Consensus 190 -~t------------~~-l~~~~~~ADIvV~Av----G~p~~i~~~~v---k~Ga----vVIDvGi~~ 232 (285)
T PRK14191 190 -LT------------KD-LSFYTQNADIVCVGV----GKPDLIKASMV---KKGA----VVVDIGINR 232 (285)
T ss_pred -Cc------------HH-HHHHHHhCCEEEEec----CCCCcCCHHHc---CCCc----EEEEeeccc
Confidence 00 00 256788999999998 67889999999 9999 999999975
No 21
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.0022 Score=64.55 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+...+|+|+|+|. ||+.....+...||.|. + | .+ +
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-----------------------------v--~--~~------~---- 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVT-----------------------------I--C--HS------R---- 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-----------------------------E--E--eC------C----
Confidence 45668999999997 99999998888877551 1 1 00 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ .. +.+.++.+|||||+. ..|.+|+.+++ ++|. +|+|+....
T Consensus 193 --t------------~~-L~~~~~~aDIvI~At----G~~~~v~~~~l---k~ga----vViDvg~n~ 234 (283)
T PRK14192 193 --T------------QN-LPELVKQADIIVGAV----GKPELIKKDWI---KQGA----VVVDAGFHP 234 (283)
T ss_pred --c------------hh-HHHHhccCCEEEEcc----CCCCcCCHHHc---CCCC----EEEEEEEee
Confidence 0 00 244567899999999 24558999886 8999 999998765
No 22
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.17 E-value=0.007 Score=63.85 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=73.3
Q ss_pred CCCCcccccccc-------cCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--e--
Q 012946 163 YSTPFLTLGAAY-------MYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--V-- 231 (452)
Q Consensus 163 ~~~P~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v-- 231 (452)
..+|++....+. .|..-+.+.+++.+. .++ .+.-.+|+|+|.|.+|++.+..|+.+|++| +
T Consensus 155 L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r~------t~~--~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~ 226 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDNRYGTGQSTIDGILRA------TNL--LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEV 226 (406)
T ss_pred CCCcEEEecchhhchhhhcccccchhHHHHHHHh------cCC--CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeC
Confidence 457777543221 255555555444432 121 345679999999999999999999999987 3
Q ss_pred CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEec
Q 012946 232 DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINC 311 (452)
Q Consensus 232 ~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~ 311 (452)
+|.+..+.. ..|.. +. . ..+.++.+||+|++
T Consensus 227 dp~r~~~A~------------~~G~~--------v~---------------------~--------leeal~~aDVVIta 257 (406)
T TIGR00936 227 DPIRALEAA------------MDGFR--------VM---------------------T--------MEEAAKIGDIFITA 257 (406)
T ss_pred ChhhHHHHH------------hcCCE--------eC---------------------C--------HHHHHhcCCEEEEC
Confidence 332221111 00110 00 0 02345678999986
Q ss_pred cccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 312 IYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 312 a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
. ..+.+|+.+.+..||+|. +|+.++
T Consensus 258 T----G~~~vI~~~~~~~mK~Ga----iliN~G 282 (406)
T TIGR00936 258 T----GNKDVIRGEHFENMKDGA----IVANIG 282 (406)
T ss_pred C----CCHHHHHHHHHhcCCCCc----EEEEEC
Confidence 4 467899999999999999 777554
No 23
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.13 E-value=0.0019 Score=65.00 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=59.5
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.|. ||+-...++.+.||.|. + |. + .+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-----------------------------v--~~--s----~t----- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-----------------------------I--LH--S----RS----- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-----------------------------E--Ee--C----Cc-----
Confidence 56678999999987 99999999999887662 0 10 0 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.. +.++++.+||||+++-- |.+|+.+|+ |+|. +|||++...
T Consensus 193 ---------------~~-l~~~~~~ADIVIsAvg~----p~~i~~~~v---k~ga----vVIDvGi~~ 233 (286)
T PRK14175 193 ---------------KD-MASYLKDADVIVSAVGK----PGLVTKDVV---KEGA----VIIDVGNTP 233 (286)
T ss_pred ---------------hh-HHHHHhhCCEEEECCCC----CcccCHHHc---CCCc----EEEEcCCCc
Confidence 00 25678899999999844 668999986 8998 999999865
No 24
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.10 E-value=0.0016 Score=69.00 Aligned_cols=119 Identities=11% Similarity=0.133 Sum_probs=74.8
Q ss_pred CCCCcccccccc-------cCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCC
Q 012946 163 YSTPFLTLGAAY-------MYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VDP 233 (452)
Q Consensus 163 ~~~P~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~ 233 (452)
..+|.++.+.+. .|..-+...+++++.. ++ .+.-.+|+|+|.|.+|++.+..|+.+|+.| ++.
T Consensus 172 l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~rat------~~--~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~ 243 (425)
T PRK05476 172 LKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRAT------NV--LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEV 243 (425)
T ss_pred CCCCEEecCCcccCccccccHHHHhhhHHHHHHhc------cC--CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 567888653321 1334444444444321 22 345678999999999999999999999977 332
Q ss_pred CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccc
Q 012946 234 SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIY 313 (452)
Q Consensus 234 ~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~ 313 (452)
...+..... ..+. .+. + ..+.++.+||||++.
T Consensus 244 dp~ra~~A~----------~~G~--------~v~----------------------~-------l~eal~~aDVVI~aT- 275 (425)
T PRK05476 244 DPICALQAA----------MDGF--------RVM----------------------T-------MEEAAELGDIFVTAT- 275 (425)
T ss_pred CchhhHHHH----------hcCC--------Eec----------------------C-------HHHHHhCCCEEEECC-
Confidence 222222200 0010 000 0 134566899999985
Q ss_pred cCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 314 WEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 314 ~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
..+.+|+.++++.||+|+ +++.++
T Consensus 276 ---G~~~vI~~~~~~~mK~Ga----iliNvG 299 (425)
T PRK05476 276 ---GNKDVITAEHMEAMKDGA----ILANIG 299 (425)
T ss_pred ---CCHHHHHHHHHhcCCCCC----EEEEcC
Confidence 356689999999999999 887665
No 25
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.01 E-value=0.0022 Score=67.81 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=74.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC-EE-eCCCC---hhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH-TF-VDPSR---LPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPK 275 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa-~v-v~~~~---l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~ 275 (452)
.++..+|+|+|+|..|..++..+...|+ .+ +.... .+++.+. ++.. .+.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~-----------~g~~-------~i~-------- 230 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE-----------LGGE-------AVK-------- 230 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-----------cCCe-------Eee--------
Confidence 3567899999999999999999999994 44 22222 2333321 1111 000
Q ss_pred CCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeec
Q 012946 276 DSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILN 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~ 355 (452)
+ .. ..+.+..+||||+|.- .+.| +++.++++.+.++..+-.+|+|++. -.+|
T Consensus 231 -----~-------------~~-l~~~l~~aDvVi~aT~--s~~~-ii~~e~l~~~~~~~~~~~~viDla~--Prdi---- 282 (417)
T TIGR01035 231 -----F-------------ED-LEEYLAEADIVISSTG--APHP-IVSKEDVERALRERTRPLFIIDIAV--PRDV---- 282 (417)
T ss_pred -----H-------------HH-HHHHHhhCCEEEECCC--CCCc-eEcHHHHHHHHhcCCCCeEEEEeCC--CCCC----
Confidence 0 00 1345668999999942 2334 6899999987443223348999962 1122
Q ss_pred ccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcch
Q 012946 356 QTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFP 396 (452)
Q Consensus 356 ~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp 396 (452)
+..+... .||.+|.+|+|-..+.
T Consensus 283 -----d~~v~~l-------------~~v~l~~vDdl~~~~~ 305 (417)
T TIGR01035 283 -----DPAVARL-------------EGVFLYDVDDLQPVVE 305 (417)
T ss_pred -----ChhhcCc-------------CCeEEEEHHHHHHHHH
Confidence 2222222 3788899998876555
No 26
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.01 E-value=0.002 Score=66.13 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..+..++.+|.+| .++..-....+. +
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-------------------~---------------- 191 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKE-------------------L---------------- 191 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHH-------------------c----------------
Confidence 567789999999999999999999999877 333211111100 0
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
+. .+ .. +.+.++.+|+|+.+.-.....-.+|.++.++.||+|+ ++|++|
T Consensus 192 -~~----------~~-~~-l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga----~lIN~a 240 (333)
T PRK13243 192 -GA----------EY-RP-LEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTA----ILVNTA 240 (333)
T ss_pred -CC----------Ee-cC-HHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCe----EEEECc
Confidence 00 00 11 2667889999999998877777899999999999999 999987
No 27
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.97 E-value=0.0025 Score=64.81 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=68.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+| .++.... .. .
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~-~~------------------------------------~- 183 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN-KN------------------------------------E- 183 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc-cc------------------------------------c-
Confidence 466789999999999999999999999877 2321000 00 0
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCC
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGS 350 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~ 350 (452)
+|. + .. +++.++.+|+|+.+.-....+-.||+++.++.||||+ ++|-++ .|+-
T Consensus 184 -~~~----------~-~~-l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a----~lIN~a--RG~v 236 (311)
T PRK08410 184 -EYE----------R-VS-LEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGA----ILINVG--RGGI 236 (311)
T ss_pred -Cce----------e-ec-HHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCe----EEEECC--Cccc
Confidence 010 0 11 2778899999999987777778899999999999999 888776 4443
No 28
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.95 E-value=0.0013 Score=63.94 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=30.4
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.+.++.+|||||+.- |-++++++++.|.++. +|.|++
T Consensus 92 ~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~----ivf~ls 128 (226)
T cd05311 92 KEALKGADVFIGVSR-----PGVVKKEMIKKMAKDP----IVFALA 128 (226)
T ss_pred HHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCC----EEEEeC
Confidence 355677999999985 4567899999998887 888988
No 29
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.94 E-value=0.0026 Score=67.29 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=74.0
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCC-EE--eCCC--ChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPH-TF--VDPS--RLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa-~v--v~~~--~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
++..+|+|+|+|..|+.++..+...|+ .+ ++.. +.+++.+. ++.. + +
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~-----------~g~~---~----~---------- 231 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE-----------FGGE---A----I---------- 231 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-----------cCCc---E----e----------
Confidence 467899999999999999999999998 44 2222 22333321 1111 0 0
Q ss_pred CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhh-cCCCCeEEEEEeeecCCCCeeeec
Q 012946 277 SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLA-QKGCPLVGISDLTCDMEGSIEILN 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk-~gs~~l~vIvDvs~D~gG~iE~~~ 355 (452)
.+ .. ..+.+..+|+||+|.- .+. .+++.++++.+- ...++-.+|+|++.-
T Consensus 232 ---~~-------------~~-~~~~l~~aDvVI~aT~--s~~-~~i~~~~l~~~~~~~~~~~~vviDla~P--------- 282 (423)
T PRK00045 232 ---PL-------------DE-LPEALAEADIVISSTG--APH-PIIGKGMVERALKARRHRPLLLVDLAVP--------- 282 (423)
T ss_pred ---eH-------------HH-HHHHhccCCEEEECCC--CCC-cEEcHHHHHHHHhhccCCCeEEEEeCCC---------
Confidence 00 00 1345678899999953 233 468999998862 111233489999731
Q ss_pred ccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcch
Q 012946 356 QTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFP 396 (452)
Q Consensus 356 ~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp 396 (452)
-.++..+... +||.+|.+|+|-..+.
T Consensus 283 --rdid~~v~~l-------------~~v~l~~vDdl~~~~~ 308 (423)
T PRK00045 283 --RDIEPEVGEL-------------PGVYLYDVDDLQEIVE 308 (423)
T ss_pred --CCCccccccc-------------CCeEEEEHHHHHHHHH
Confidence 1222223222 3788899998876555
No 30
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.92 E-value=0.0023 Score=65.29 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=66.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEe--CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFV--DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv--~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+|+ ++.. . ..
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~----~------------------------------------~~ 184 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPG----R------------------------------------PA 184 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC----C------------------------------------cc
Confidence 4567899999999999999999999998762 2100 0 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.+ .+ .. +.+.++.+|+|+.+.-....+-.||+++.++.||+|+ ++|.++
T Consensus 185 -~~----------~~-~~-l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga----~lIN~a 233 (317)
T PRK06487 185 -RP----------DR-LP-LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA----LLINTA 233 (317)
T ss_pred -cc----------cc-cC-HHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe----EEEECC
Confidence 00 00 11 2778899999999998877788899999999999999 888877
No 31
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.89 E-value=0.0025 Score=64.99 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=66.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRA 280 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~ 280 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+|+-...... . +. ..+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~-~-----------------------------~~------~~~ 187 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGA-S-----------------------------VC------REG 187 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcc-c-----------------------------cc------ccc
Confidence 45668999999999999999999999987621100000 0 00 000
Q ss_pred CcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 281 FDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 281 ~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
| .. +.+.++.+|+|+.+.-....+-.||+++.++.||+|+ ++|.++
T Consensus 188 ------------~-~~-l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga----~lIN~a 233 (314)
T PRK06932 188 ------------Y-TP-FEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTA----FLINTG 233 (314)
T ss_pred ------------c-CC-HHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCe----EEEECC
Confidence 1 11 2778899999999988877778899999999999999 888876
No 32
>PRK07574 formate dehydrogenase; Provisional
Probab=96.88 E-value=0.0022 Score=67.17 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCCh-hhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRL-PELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l-~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+| .++... .+..+. .+.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-----------~g~--------------------- 236 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-----------LGL--------------------- 236 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh-----------cCc---------------------
Confidence 456688999999999999999999999987 333221 111100 000
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
. ++ .. +++.++.+|||+.+.-.....=.+|+++.+..||+|+ ++|+++
T Consensus 237 --~-----~~-------~~-l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga----~lIN~a 284 (385)
T PRK07574 237 --T-----YH-------VS-FDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGS----YLVNTA 284 (385)
T ss_pred --e-----ec-------CC-HHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCc----EEEECC
Confidence 0 00 11 2677899999999998876666789999999999999 999987
No 33
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.82 E-value=0.0036 Score=63.53 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=66.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+| .++. ..+ +
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~-~~~-------------------------------------~-- 158 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS-YVN-------------------------------------D-- 158 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-Ccc-------------------------------------c--
Confidence 567799999999999999999999999876 2221 000 0
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
+... . + .. +++.++.+|+|+.+.-.....-.+|+++.++.||+|+ ++|++|
T Consensus 159 -~~~~--~------~-~~-l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga----~lIN~s 209 (303)
T PRK06436 159 -GISS--I------Y-ME-PEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGL----AIINVA 209 (303)
T ss_pred -Cccc--c------c-CC-HHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCe----EEEECC
Confidence 0000 0 0 11 2667889999999998887677799999999999999 999987
No 34
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.82 E-value=0.004 Score=65.06 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|++|+..++.++.+|.+| .+|...+ . + ..
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~--------------~---------------------~~ 155 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R--------------G---------------------DE 155 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c--------------c---------------------cc
Confidence 456789999999999999999999999877 3331100 0 0 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCC----CCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEK----QFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~----~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
..| .. ++++++.+|||+...-... ++=.||.++.++.||+|+ ++|+++
T Consensus 156 ~~~-------------~~-L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~ga----ilIN~a 207 (378)
T PRK15438 156 GDF-------------RS-LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGA----ILINAC 207 (378)
T ss_pred ccc-------------CC-HHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCc----EEEECC
Confidence 001 11 2678889999997766543 245799999999999999 999887
No 35
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.81 E-value=0.0037 Score=64.28 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=70.7
Q ss_pred cCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE----eCCCChhhHHhhhCCCCCcc
Q 012946 175 MYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF----VDPSRLPELFEKAGDSSQST 250 (452)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v----v~~~~l~~~~e~~~~~~~~~ 250 (452)
.|+.-+.+.+.+.+.- .++.+| .+|||.|.|-||+|...-|+++||.| |+| .+.++.-
T Consensus 188 rYGtgqS~~DgI~RaT-n~liaG-------K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP--I~AleA~-------- 249 (420)
T COG0499 188 RYGTGQSLLDGILRAT-NVLLAG-------KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP--IRALEAA-------- 249 (420)
T ss_pred ccccchhHHHHHHhhh-ceeecC-------ceEEEecccccchHHHHHhhcCCCeEEEEecCc--hHHHHHh--------
Confidence 4777788888777632 233333 67999999999999999999999977 444 3333311
Q ss_pred ccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHh
Q 012946 251 CSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDL 330 (452)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~m 330 (452)
.. ||.- . -..+.++..||+|||-- .-..|+.|+++.|
T Consensus 250 ---Md------------------------Gf~V-----~-------~m~~Aa~~gDifiT~TG----nkdVi~~eh~~~M 286 (420)
T COG0499 250 ---MD------------------------GFRV-----M-------TMEEAAKTGDIFVTATG----NKDVIRKEHFEKM 286 (420)
T ss_pred ---hc------------------------CcEE-----E-------EhHHhhhcCCEEEEccC----CcCccCHHHHHhc
Confidence 01 1110 0 01456677899999853 3448999999999
Q ss_pred hcCCCCeEEEEE
Q 012946 331 AQKGCPLVGISD 342 (452)
Q Consensus 331 k~gs~~l~vIvD 342 (452)
|.|+ +++.
T Consensus 287 kDga----Il~N 294 (420)
T COG0499 287 KDGA----ILAN 294 (420)
T ss_pred cCCe----EEec
Confidence 9998 6653
No 36
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.76 E-value=0.0049 Score=65.11 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--e--CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--V--DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v--~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
.++-.+|+|+|+|.+|++++..|+.+|+.| + ++.++.... ..|.. ..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~------------~~G~~--------~~--------- 249 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA------------MEGYE--------VM--------- 249 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH------------hcCCE--------Ec---------
Confidence 345689999999999999999999999977 3 233332222 11111 00
Q ss_pred CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 277 SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 277 ~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
. ..+.++.+|+||.|. ..|..++.++++.|++|. +|+.++
T Consensus 250 ------------~--------~~e~v~~aDVVI~at----G~~~~i~~~~l~~mk~Gg----ilvnvG 289 (413)
T cd00401 250 ------------T--------MEEAVKEGDIFVTTT----GNKDIITGEHFEQMKDGA----IVCNIG 289 (413)
T ss_pred ------------c--------HHHHHcCCCEEEECC----CCHHHHHHHHHhcCCCCc----EEEEeC
Confidence 0 023456789999985 356689999999999999 887666
No 37
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0052 Score=62.99 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..+..++.+|..| .+|..-++..+ .. +
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~--------------~~-------------------~- 184 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAG--------------VD-------------------G- 184 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhc--------------cc-------------------c-
Confidence 455789999999999999999999999987 44422222220 00 0
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCe
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSI 351 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~i 351 (452)
.+.. .. +.+.++.+|||+...=....+=.+|+.+.+..||+|. ++|-.| .|+-+
T Consensus 185 -~~~~-----------~~-Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~ga----ilIN~a--RG~vV 238 (324)
T COG0111 185 -VVGV-----------DS-LDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA----ILINAA--RGGVV 238 (324)
T ss_pred -ceec-----------cc-HHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCe----EEEECC--Cccee
Confidence 0000 11 2778999999999888877788899999999999998 776554 55443
No 38
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.72 E-value=0.0071 Score=60.89 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=34.9
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++ +.|.||+.+|+ |+|+ +|||++++.
T Consensus 199 ~~~~~~ADIVI~Av----G~p~li~~~~v---k~Ga----vVIDVGi~~ 236 (286)
T PRK14184 199 AEECREADFLFVAI----GRPRFVTADMV---KPGA----VVVDVGINR 236 (286)
T ss_pred HHHHHhCCEEEEec----CCCCcCCHHHc---CCCC----EEEEeeeec
Confidence 66788999999999 67999999999 9999 999999997
No 39
>PLN03139 formate dehydrogenase; Provisional
Probab=96.69 E-value=0.0033 Score=65.87 Aligned_cols=169 Identities=12% Similarity=0.152 Sum_probs=101.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCCh-hhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRL-PELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l-~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.+|.|+|.|+.|+..++.++.+|..| .++... .+..+. .+.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~-----------~g~--------------------- 243 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE-----------TGA--------------------- 243 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-----------cCc---------------------
Confidence 567789999999999999999999999977 333221 111100 000
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeec-----------
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCD----------- 346 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D----------- 346 (452)
. +. .. +.+.++.+|||+.+.-.....=.+|+++.+..||+|+ ++|+++=-
T Consensus 244 --~-----~~-------~~-l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga----~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 244 --K-----FE-------ED-LDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGV----LIVNNARGAIMDTQAVADA 304 (386)
T ss_pred --e-----ec-------CC-HHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCe----EEEECCCCchhhHHHHHHH
Confidence 0 00 11 2667889999999987666566789999999999999 99998721
Q ss_pred -CCCCeeee------cccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHHHHHHhhcccc
Q 012946 347 -MEGSIEIL------NQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVAD 419 (452)
Q Consensus 347 -~gG~iE~~------~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~~l~~l~~~~~ 419 (452)
..|-+-.. .+|-..++|... -++| +.-+|+-+ .-.++-..++.....-|..+.++..
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~-------------~pNv--ilTPHiag-~t~~~~~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRY-------------MPNH--AMTPHISG-TTIDAQLRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhc-------------CCCe--EEcccccc-cCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12332210 122222233222 2233 44466644 3455555566666666655555432
Q ss_pred cccCCHHHHhchhhcCCeecCCC
Q 012946 420 IAKLPGNLRRACIAHGGALTSLY 442 (452)
Q Consensus 420 ~~~~~~~l~~a~i~~~G~lt~~~ 442 (452)
+ -..-+|+.+|++..+|
T Consensus 369 ~------~~~~~i~~~~~~~~~~ 385 (386)
T PLN03139 369 F------PAQNYIVKEGKLASQY 385 (386)
T ss_pred C------CCcceeecCCcccccc
Confidence 2 1233677888877654
No 40
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.66 E-value=0.0044 Score=61.28 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=90.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE-eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC-C
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF-VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS-S 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~-~ 278 (452)
.+.-.+|+|.|+|-+|.|..+.+...+..- ++.++.+ ++ || .+++..+..+... -
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~------------------~~---i~--~vD~~Gll~~~r~~l 78 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEAC------------------KR---IW--XVDRKGLLVKNRKET 78 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHh------------------cc---EE--EECCCCeEeCCCCcc
Confidence 567789999999999999999998877531 2111111 11 33 2333322211110 0
Q ss_pred CCCccccc--ccCcCCcCcchHhhhcC--CCcEEEeccccCCCCCcccCHHHHHHhh---cCCCCeEEEEEeeecC----
Q 012946 279 RAFDKNDY--YEHPEQYNPIFHEKIAP--YASAIINCIYWEKQFPRLLSTQQLRDLA---QKGCPLVGISDLTCDM---- 347 (452)
Q Consensus 279 ~~~~~~~~--~~~~e~y~~~f~~~~~~--~~DIvIn~a~~~~~~P~Lit~e~l~~mk---~gs~~l~vIvDvs~D~---- 347 (452)
..| +..+ +.+++.-...+ .+.++ ..||+|...-. |-++|+|+|+.|. +.. +|.=+|--.
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~L-~eav~~~kptvlIG~S~~----~g~ft~evv~~Ma~~~~~P----IIFaLSNPt~~aE 148 (254)
T cd00762 79 CPN-EYHLARFANPERESGDL-EDAVEAAKPDFLIGVSRV----GGAFTPEVIRAXAEINERP----VIFALSNPTSKAE 148 (254)
T ss_pred CHH-HHHHHHHcCcccccCCH-HHHHHhhCCCEEEEeCCC----CCCCCHHHHHHHhhcCCCC----EEEECCCcCCccc
Confidence 011 1111 22332111233 67777 88999997644 4599999999997 545 676666432
Q ss_pred ----------CCC-eeeecccccCCCCEEEeCCCC-------CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 348 ----------EGS-IEILNQTTTIDSPFFRYDPKN-------DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 348 ----------gG~-iE~~~~~Tt~~~P~~~~~~~~-------~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
.|. +--+ .+.+.|+ +|+-.+ +...-+--.-|+.......++.+|=..|+..+++...+
T Consensus 149 ~tpe~a~~~t~G~ai~At---Gspf~pv-~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~ 224 (254)
T cd00762 149 CTAEEAYTATEGRAIFAS---GSPFHPV-ELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTE 224 (254)
T ss_pred cCHHHHHhhcCCCEEEEE---CCCCCCc-ccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCCh
Confidence 132 2221 1223332 121111 11111112334555566677777777888777775544
No 41
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.65 E-value=0.0056 Score=62.69 Aligned_cols=92 Identities=9% Similarity=0.062 Sum_probs=66.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHh-cCCCEEe--CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFK-LLPHTFV--DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~-~LGa~vv--~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.++.|+|.|+.|+.-++.++ .+|.+|+ ++..-++..+. .+ +
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~-----------~~--------~------------- 189 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEER-----------FN--------A------------- 189 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHh-----------cC--------c-------------
Confidence 567799999999999999999998 8998772 22111111100 00 0
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
. | .. +.+.++.+|+|+.+.-....+=.||.++.++.||+|+ ++|.++
T Consensus 190 --~------------~-~~-l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga----~lIN~a 236 (323)
T PRK15409 190 --R------------Y-CD-LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSA----IFINAG 236 (323)
T ss_pred --E------------e-cC-HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCe----EEEECC
Confidence 0 0 11 2677889999999988877677899999999999999 888876
No 42
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.61 E-value=0.007 Score=62.12 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCCceEEEEcCcHHHHHHHHHH-hcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELF-KLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a-~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.+|.|+|.|+.|+..+..+ +.+|..| .++..-+... .
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~-~----------------------------------- 186 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA-T----------------------------------- 186 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH-h-----------------------------------
Confidence 45678999999999999988887 6788766 2221111100 0
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeee
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
... +... +.+.++.+|+||.++-.......++.++.++.||+|+ ++||+|-
T Consensus 187 --------~~~----~~~~-l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~ga----ilIN~sR 237 (332)
T PRK08605 187 --------YVD----YKDT-IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGA----VFVNCAR 237 (332)
T ss_pred --------hcc----ccCC-HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCc----EEEECCC
Confidence 000 0011 2567889999999997776677899999999999999 9999983
No 43
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.59 E-value=0.0067 Score=63.54 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|++|+..++.++.+|.+| .+|.... . ++.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~--~-----------------------------------~~~ 155 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE--A-----------------------------------EGD 155 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc--c-----------------------------------ccC
Confidence 456689999999999999999999999877 3331100 0 000
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCC----CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCe
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEK----QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSI 351 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~----~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~i 351 (452)
..| .. +++.++.+|||+.+.-... .+-.||+++.+..||+|+ ++|.+| .|+-|
T Consensus 156 ~~~-------------~~-l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~ga----ilIN~a--RG~vV 212 (381)
T PRK00257 156 GDF-------------VS-LERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGA----WLINAS--RGAVV 212 (381)
T ss_pred ccc-------------cC-HHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCe----EEEECC--CCccc
Confidence 001 11 2667888999998887754 456899999999999999 898877 55443
No 44
>PLN02306 hydroxypyruvate reductase
Probab=96.58 E-value=0.0066 Score=63.68 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=73.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHh-cCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFK-LLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~-~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.+|.|+|.|+.|+..++.+. .+|.+| .++..-.+.... .. .++..+... +
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~------------~~----~~~~~l~~~-------~ 218 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKF------------VT----AYGQFLKAN-------G 218 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhh------------hh----hhccccccc-------c
Confidence 466789999999999999999984 999988 444221111100 00 010000000 0
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCe
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSI 351 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~i 351 (452)
.+.- .+ .+... +++.++.+|||+.++-....+-.||+.+.++.||+|+ ++|.++ .|+-+
T Consensus 219 --~~~~-~~-----~~~~~-L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga----~lIN~a--RG~lV 277 (386)
T PLN02306 219 --EQPV-TW-----KRASS-MEEVLREADVISLHPVLDKTTYHLINKERLALMKKEA----VLVNAS--RGPVI 277 (386)
T ss_pred --cccc-cc-----cccCC-HHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCe----EEEECC--Ccccc
Confidence 0000 00 00012 2778899999999888877888999999999999999 999988 66554
No 45
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.54 E-value=0.0073 Score=61.91 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.++.|+|.|+.|+..++.++.+|.++ .++...++..+. ++.
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~-----------~~~---------------------- 189 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKE-----------LGA---------------------- 189 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhh-----------cCc----------------------
Confidence 567899999999999999999999999887 333322222210 010
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.|.+ +.+.++.+|||+-..=.....=.||+++.++.||+|. ++|-++
T Consensus 190 -------------~y~~--l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga----~lVNta 236 (324)
T COG1052 190 -------------RYVD--LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGA----ILVNTA 236 (324)
T ss_pred -------------eecc--HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCe----EEEECC
Confidence 1212 2678889999987766655677899999999999999 888776
No 46
>PLN02494 adenosylhomocysteinase
Probab=96.51 E-value=0.0087 Score=64.09 Aligned_cols=120 Identities=10% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCCCcccccccc-------cCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCC
Q 012946 163 YSTPFLTLGAAY-------MYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VDP 233 (452)
Q Consensus 163 ~~~P~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~ 233 (452)
..+|.+....+. .|+.-+...+.+.+.. ++ .+.-.+|+|+|.|.+|++.+..|+.+|+.| ++.
T Consensus 214 L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~r~t------~i--~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~ 285 (477)
T PLN02494 214 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRAT------DV--MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEI 285 (477)
T ss_pred CCCCEEEEcChhhhhhhhccccccccHHHHHHHhc------CC--ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 456777653321 2444455555444321 21 345688999999999999999999999977 222
Q ss_pred CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccc
Q 012946 234 SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIY 313 (452)
Q Consensus 234 ~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~ 313 (452)
...+..... .. +|.. .+ +.+.++.+||||+|
T Consensus 286 dp~r~~eA~----------~~-------------------------G~~v-----v~-------leEal~~ADVVI~t-- 316 (477)
T PLN02494 286 DPICALQAL----------ME-------------------------GYQV-----LT-------LEDVVSEADIFVTT-- 316 (477)
T ss_pred CchhhHHHH----------hc-------------------------CCee-----cc-------HHHHHhhCCEEEEC--
Confidence 221111100 00 1100 00 14456789999984
Q ss_pred cCCCCCcccCHHHHHHhhcCCCCeEEEEEeee
Q 012946 314 WEKQFPRLLSTQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 314 ~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
...+.+|..+.++.||+|+ +++-++-
T Consensus 317 --TGt~~vI~~e~L~~MK~GA----iLiNvGr 342 (477)
T PLN02494 317 --TGNKDIIMVDHMRKMKNNA----IVCNIGH 342 (477)
T ss_pred --CCCccchHHHHHhcCCCCC----EEEEcCC
Confidence 3456788999999999999 7877754
No 47
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.30 E-value=0.03 Score=59.36 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
++...+|+|+|+|-+|..++..+...|+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~ 205 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP 205 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 4456889999999999999999999997
No 48
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.22 E-value=0.014 Score=63.49 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=68.0
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..+..++.+|.+| .++..-++..+. .+
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~g----------------------- 180 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQ-----------LG----------------------- 180 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-----------cC-----------------------
Confidence 456789999999999999999999999877 343211111100 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
+. +. .. +.+.++.+|+|+.+.-.....-.+|+.+.++.||+|+ ++|+++
T Consensus 181 --~~---~~-------~~-l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga----~lIN~a 229 (525)
T TIGR01327 181 --VE---LV-------DD-LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGV----IIVNCA 229 (525)
T ss_pred --CE---Ec-------CC-HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCe----EEEEcC
Confidence 00 00 11 2677889999999998877677799999999999999 999887
No 49
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.20 E-value=0.0088 Score=61.39 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..+..++.+|..| .++.. +...
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~-~~~~-------------------------------------- 183 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP-NKDL-------------------------------------- 183 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh-hHhh--------------------------------------
Confidence 455678999999999999999999999876 22210 0000
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.+.+ +... +.+.++.+|+|+.+.-.....-.++.++.+..||+|+ ++|+++
T Consensus 184 -~~~~---------~~~~-l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~ga----vlIN~a 234 (330)
T PRK12480 184 -DFLT---------YKDS-VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGA----ILVNAA 234 (330)
T ss_pred -hhhh---------ccCC-HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCc----EEEEcC
Confidence 0000 0011 2567889999999987765556788999999999999 999887
No 50
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.20 E-value=0.011 Score=62.56 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=66.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..++.++.+|.+| .++.. ... .+
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~--~~~-----------------------------------~~- 189 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED--KLP-----------------------------------LG- 189 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc--ccc-----------------------------------cC-
Confidence 567789999999999999999999999877 33210 000 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
++ .+... +++.++.+|+|+.+.-....+-.||+++.++.||+|+ ++|.+|
T Consensus 190 -~~----------~~~~~-l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga----~lIN~a 239 (409)
T PRK11790 190 -NA----------RQVGS-LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGA----ILINAS 239 (409)
T ss_pred -Cc----------eecCC-HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCe----EEEECC
Confidence 00 00011 2678899999999876555666799999999999999 999988
No 51
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.018 Score=58.31 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=34.0
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++ ..|.||+.+|+ |+|+ +|||+++|.
T Consensus 201 ~~~~~~ADIvI~Av----g~~~li~~~~v---k~Ga----vVIDVgi~~ 238 (295)
T PRK14174 201 PSYTRQADILIAAI----GKARFITADMV---KPGA----VVIDVGINR 238 (295)
T ss_pred HHHHHhCCEEEEec----CccCccCHHHc---CCCC----EEEEeeccc
Confidence 66788999999999 45589999999 9999 999999986
No 52
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.19 E-value=0.0084 Score=61.10 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=65.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|..|+..++.++.+|..| +++...+ ..
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~-~~-------------------------------------- 173 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS-WP-------------------------------------- 173 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC-CC--------------------------------------
Confidence 445689999999999999999999999876 3221100 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
++.. +. .+ .. +++.++.+|+|+.+.--....=.+|.++.++.||+|+ ++|+++
T Consensus 174 -~~~~--~~-~~----~~-l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga----~lIN~a 226 (312)
T PRK15469 174 -GVQS--FA-GR----EE-LSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGA----YLLNLA 226 (312)
T ss_pred -Ccee--ec-cc----cc-HHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCc----EEEECC
Confidence 0000 00 01 11 2678899999999987776556799999999999999 999987
No 53
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.027 Score=56.80 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=58.7
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.|+ ||+--..++.+.||.|. .|... +
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-------------------------------v~hs~------T----- 198 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-------------------------------VCHVF------T----- 198 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-------------------------------EEecc------C-----
Confidence 45668999999988 99999999988877651 11100 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ + +.++++.+||||+++-. |.+|+.+|+ |+|+ +|+|+....
T Consensus 199 ---~-----~--------l~~~~~~ADIvv~AvG~----p~~i~~~~v---k~ga----vVIDvGin~ 239 (287)
T PRK14176 199 ---D-----D--------LKKYTLDADILVVATGV----KHLIKADMV---KEGA----VIFDVGITK 239 (287)
T ss_pred ---C-----C--------HHHHHhhCCEEEEccCC----ccccCHHHc---CCCc----EEEEecccc
Confidence 0 0 25678899999998765 558999987 8999 999999865
No 54
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.15 E-value=0.025 Score=57.04 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=58.2
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.|. ||+--..++.+.||.|. .|.-. +
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-------------------------------~~hs~------t----- 192 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-------------------------------ICHSK------T----- 192 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-------------------------------EecCC------C-----
Confidence 45568899999976 59999999988877652 11100 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ +.++++.+||||.++- .|.+|+.+|+ |+|. +|||++...
T Consensus 193 -----------~~-----l~~~~~~ADIVV~avG----~~~~i~~~~i---k~ga----vVIDVGin~ 233 (285)
T PRK14189 193 -----------RD-----LAAHTRQADIVVAAVG----KRNVLTADMV---KPGA----TVIDVGMNR 233 (285)
T ss_pred -----------CC-----HHHHhhhCCEEEEcCC----CcCccCHHHc---CCCC----EEEEccccc
Confidence 00 2567889999999986 5779999877 9999 999999875
No 55
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.028 Score=56.59 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.| ..|.-.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atV-------------------------------t~chs~------------ 191 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATV-------------------------------TYCHSK------------ 191 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEE-------------------------------EEEeCC------------
Confidence 455688999998 669999999998876655 111100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
- .. +.++++.+||||.++ ..|.||+.+|+ |+|+ +|||++.+.
T Consensus 192 ----------t----~~-l~~~~~~ADIvI~Av----G~p~~i~~~~i---k~ga----vVIDvGi~~ 233 (284)
T PRK14190 192 ----------T----KN-LAELTKQADILIVAV----GKPKLITADMV---KEGA----VVIDVGVNR 233 (284)
T ss_pred ----------c----hh-HHHHHHhCCEEEEec----CCCCcCCHHHc---CCCC----EEEEeeccc
Confidence 0 00 256788999999998 56779999999 8999 999999886
No 56
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.08 E-value=0.018 Score=62.72 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=68.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-.+|.|+|.|+.|+..+..++.+|.+| .++..-++..+. .+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~g----------------------- 182 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQ-----------LG----------------------- 182 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-----------cC-----------------------
Confidence 466789999999999999999999999987 343211111100 00
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
+. +. . +.+.++.+|+|+.+.-.....-.+|+.+.++.||+|+ ++|+++-
T Consensus 183 --~~---~~--------~-l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga----~lIN~aR 231 (526)
T PRK13581 183 --VE---LV--------S-LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGV----RIINCAR 231 (526)
T ss_pred --CE---EE--------c-HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCe----EEEECCC
Confidence 00 00 0 2567889999999998887677799999999999999 9999873
No 57
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.05 E-value=0.058 Score=44.12 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLL 226 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~L 226 (452)
.+...+++|+|+|.+|..+...+.+.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 56788999999999999999988775
No 58
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.04 E-value=0.026 Score=56.77 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
++...+|+|+|+|-+|+.++..+..+|+
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~ 151 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGV 151 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 3456899999999999999999999998
No 59
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.02 E-value=0.025 Score=56.50 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
.+...+|+|+|+|.+|+.++..+..+| ..|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V 150 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEI 150 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEE
Confidence 445688999999999999999999999 455
No 60
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.91 E-value=0.038 Score=55.69 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=58.2
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.|+ ||+--..++.+.||.|. .|.-.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-------------------------------v~hs~------------ 192 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-------------------------------VCHRF------------ 192 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-------------------------------EEECC------------
Confidence 45568999999988 99999999988777651 11100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ + +.++++.+||||+++- .|.+|+.+++ |+|. +|+|++...
T Consensus 193 --T~-----~--------l~~~~~~ADIvi~avG----~p~~v~~~~v---k~ga----vVIDvGin~ 234 (285)
T PRK10792 193 --TK-----N--------LRHHVRNADLLVVAVG----KPGFIPGEWI---KPGA----IVIDVGINR 234 (285)
T ss_pred --CC-----C--------HHHHHhhCCEEEEcCC----CcccccHHHc---CCCc----EEEEccccc
Confidence 00 0 2567889999999975 4558999887 8999 999999764
No 61
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.045 Score=55.05 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=58.6
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.+ .||+--..++.+-||.|. .|.-
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-------------------------------i~hs------------- 189 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVD-------------------------------ICHI------------- 189 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCC-------------
Confidence 4566899999997 799999999988777651 0100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+.+ + +.++++.+||||.++ ..|.||+.+|+ |+|+ +|+|+....
T Consensus 190 -~T~-----~--------l~~~~~~ADIvV~Av----Gkp~~i~~~~v---k~ga----vvIDvGin~ 232 (281)
T PRK14183 190 -FTK-----D--------LKAHTKKADIVIVGV----GKPNLITEDMV---KEGA----IVIDIGINR 232 (281)
T ss_pred -CCc-----C--------HHHHHhhCCEEEEec----CcccccCHHHc---CCCc----EEEEeeccc
Confidence 000 0 256788999999987 46779999999 8999 999999765
No 62
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.84 E-value=0.045 Score=57.54 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=27.5
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 200 SGICPLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 200 ~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
+.+...||++.|+|-+|.+.++.+..+|..
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~ 224 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVK 224 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCC
Confidence 378899999999999999999999999874
No 63
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.81 E-value=0.046 Score=52.06 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=27.7
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++...+|+|+|.|++|..+.+.+.+.|++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~V 54 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKL 54 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 556789999999999999999999999987
No 64
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.76 E-value=0.058 Score=57.03 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCE-E-eCCC---ChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHT-F-VDPS---RLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPK 275 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~-v-v~~~---~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~ 275 (452)
++.-.+|+|+|+|-.|..++.-+.+-|.. + |--+ +.+++.+. ++.. + +
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~-----------~~~~---~--~----------- 227 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKK-----------LGAE---A--V----------- 227 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-----------hCCe---e--e-----------
Confidence 45678999999999999999999998863 3 2222 23444432 1211 0 0
Q ss_pred CCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeec
Q 012946 276 DSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCD 346 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D 346 (452)
.| .. +..+++++||||.+..-|. .+|+++|++.......+ ++||||+.-
T Consensus 228 ----~l-------------~e-l~~~l~~~DvVissTsa~~---~ii~~~~ve~a~~~r~~-~livDiavP 276 (414)
T COG0373 228 ----AL-------------EE-LLEALAEADVVISSTSAPH---PIITREMVERALKIRKR-LLIVDIAVP 276 (414)
T ss_pred ----cH-------------HH-HHHhhhhCCEEEEecCCCc---cccCHHHHHHHHhcccC-eEEEEecCC
Confidence 00 01 2567889999999865432 47899999887444344 789999853
No 65
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.76 E-value=0.1 Score=48.94 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=25.9
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
++...+++|+|+ |.+|+.++..+.+.|+.|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V 55 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARV 55 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Confidence 556789999996 999999999888899876
No 66
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.72 E-value=0.022 Score=57.18 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=87.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcC----CCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLL----PHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~L----Ga~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
.+.-.||+|.|+|-+|.|..+.+... |... ++. .+ .|| .+++..+..+..
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~---eeA------------------~~---~i~--~vD~~Gll~~~r 75 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSE---EEA------------------RK---KIW--LVDSKGLLTKDR 75 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCCh---hhc------------------cC---eEE--EEcCCCeEeCCC
Confidence 56779999999999999999988775 4310 000 01 133 233332221110
Q ss_pred CCCCCcccccccCcC--CcCcchHhhhcC--CCcEEEeccccCCCCCcccCHHHHHHhh---cCCCCeEEEEEeeecC--
Q 012946 277 SSRAFDKNDYYEHPE--QYNPIFHEKIAP--YASAIINCIYWEKQFPRLLSTQQLRDLA---QKGCPLVGISDLTCDM-- 347 (452)
Q Consensus 277 ~~~~~~~~~~~~~~e--~y~~~f~~~~~~--~~DIvIn~a~~~~~~P~Lit~e~l~~mk---~gs~~l~vIvDvs~D~-- 347 (452)
.+-...+..|....+ .+ ..+ .+.++ ..||||.+.-. |-++|+|+|+.|. +.. +|.=+|--.
T Consensus 76 ~~l~~~~~~~a~~~~~~~~-~~L-~e~i~~v~ptvlIG~S~~----~g~ft~evv~~Ma~~~~~P----IIFaLSNPt~~ 145 (279)
T cd05312 76 KDLTPFKKPFARKDEEKEG-KSL-LEVVKAVKPTVLIGLSGV----GGAFTEEVVRAMAKSNERP----IIFALSNPTSK 145 (279)
T ss_pred CcchHHHHHHHhhcCcccC-CCH-HHHHHhcCCCEEEEeCCC----CCCCCHHHHHHHHhcCCCC----EEEECCCcCCc
Confidence 000000111211111 11 233 67777 78999997654 4599999999996 445 676666432
Q ss_pred ------------CCCe-eeecccccCCCCEEEeCCCCCCCCCCC----------CCCCeEEEeeCCcCCcchHHHHHHHH
Q 012946 348 ------------EGSI-EILNQTTTIDSPFFRYDPKNDSYHHDM----------EGDGIICSVVDNLPTEFPKEASQHFG 404 (452)
Q Consensus 348 ------------gG~i-E~~~~~Tt~~~P~~~~~~~~~~~~~~~----------~~~gV~~~~vdnLPs~lp~~AS~~fs 404 (452)
+|.+ -.| .++-.|+ +|+ .+...+. -.-|+.......++-+|=..|+..++
T Consensus 146 ~E~~pe~a~~~t~G~ai~AT---GsPf~pv-~~~---Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA 218 (279)
T cd05312 146 AECTAEDAYKWTDGRALFAS---GSPFPPV-EYN---GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALA 218 (279)
T ss_pred cccCHHHHHHhhcCCEEEEe---CCCCCCe-eeC---CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHH
Confidence 2332 211 1222332 121 1111111 12344455667788888888888888
Q ss_pred HHHH
Q 012946 405 GLLS 408 (452)
Q Consensus 405 ~~l~ 408 (452)
+..-
T Consensus 219 ~~~~ 222 (279)
T cd05312 219 SLVT 222 (279)
T ss_pred HhCC
Confidence 7543
No 67
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.61 E-value=0.033 Score=51.52 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.+ .+|+-....+.+-||.|. .|.-
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-------------------------------~~h~------------- 68 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-------------------------------ICHS------------- 68 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-------------------------------EE-T-------------
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-------------------------------eccC-------------
Confidence 4566889999996 599999999988777651 0100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDME 348 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~g 348 (452)
+. ++ ++++++.+||||.++- .|.||+.+++ |+|. +|||+..+..
T Consensus 69 -~T--------~~-----l~~~~~~ADIVVsa~G----~~~~i~~~~i---k~ga----vVIDvG~~~~ 112 (160)
T PF02882_consen 69 -KT--------KN-----LQEITRRADIVVSAVG----KPNLIKADWI---KPGA----VVIDVGINYV 112 (160)
T ss_dssp -TS--------SS-----HHHHHTTSSEEEE-SS----STT-B-GGGS----TTE----EEEE--CEEE
T ss_pred -CC--------Cc-----ccceeeeccEEeeeec----cccccccccc---cCCc----EEEecCCccc
Confidence 00 01 2667889999999874 4779999988 8999 9999998765
No 68
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.60 E-value=0.021 Score=58.04 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.++..+|+|+|+|..|+.++..+...|+
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~ 202 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGV 202 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999998776
No 69
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.46 E-value=0.09 Score=46.92 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
+..+.+|+|+|+|..|...+..+.+.| ..+
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v 46 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKI 46 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEE
Confidence 456789999999999999999999886 444
No 70
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.082 Score=53.21 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=57.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+--..++.+-||.|. .|.- .
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-------------------------------ichs------~------ 190 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVT-------------------------------IAHS------R------ 190 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCC------C------
Confidence 445688999998 5599999999988776651 1100 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ + +..+++.+||||.++- .|.||+.+|+ |+|. +|||+....
T Consensus 191 --T~-----n--------l~~~~~~ADIvI~AvG----k~~~i~~~~i---k~ga----iVIDvGin~ 232 (282)
T PRK14182 191 --TA-----D--------LAGEVGRADILVAAIG----KAELVKGAWV---KEGA----VVIDVGMNR 232 (282)
T ss_pred --CC-----C--------HHHHHhhCCEEEEecC----CcCccCHHHc---CCCC----EEEEeecee
Confidence 00 1 2567889999999983 4779999998 8999 999999775
No 71
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.45 E-value=0.081 Score=53.69 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.+ .||+--..++.+-||.|. .|+- .+
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-------------------------------vchs------~T----- 201 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-------------------------------VVHS------RT----- 201 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEE-------------------------------EeCC------CC-----
Confidence 4556889999985 599999999988776651 1100 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ + +.++++.+||||.++- .|.+|+.+|+ |+|+ +|||+....
T Consensus 202 ---~-----n--------l~~~~~~ADIvv~AvG----k~~~i~~~~v---k~ga----vVIDvGin~ 242 (299)
T PLN02516 202 ---P-----D--------PESIVREADIVIAAAG----QAMMIKGDWI---KPGA----AVIDVGTNA 242 (299)
T ss_pred ---C-----C--------HHHHHhhCCEEEEcCC----CcCccCHHHc---CCCC----EEEEeeccc
Confidence 0 1 2567889999999972 3789999998 8999 999999765
No 72
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.087 Score=53.03 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=57.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .| .-
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt------------------~c-------------hs------------- 190 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVT------------------TC-------------HR------------- 190 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE------------------EE-------------cC-------------
Confidence 445678999998 5599999999988777651 11 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+.+ + +..+++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 191 -~T~-----d--------l~~~~k~ADIvIsAvG----kp~~i~~~~v---k~ga----vVIDvGin~ 233 (282)
T PRK14180 191 -FTT-----D--------LKSHTTKADILIVAVG----KPNFITADMV---KEGA----VVIDVGINH 233 (282)
T ss_pred -CCC-----C--------HHHHhhhcCEEEEccC----CcCcCCHHHc---CCCc----EEEEecccc
Confidence 000 0 2556889999999874 5668999998 8999 999999865
No 73
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.38 E-value=0.1 Score=52.76 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=57.9
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .|.- .++
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-------------------------------ichs------~T~---- 194 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-------------------------------ICHS------KTH---- 194 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCC------CCC----
Confidence 445678999998 5599999999988776651 0100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.+|+.+|+ |+|+ +|||+....
T Consensus 195 ---------~--------L~~~~~~ADIvV~AvG----kp~~i~~~~v---k~Ga----vVIDvGin~ 234 (288)
T PRK14171 195 ---------N--------LSSITSKADIVVAAIG----SPLKLTAEYF---NPES----IVIDVGINR 234 (288)
T ss_pred ---------C--------HHHHHhhCCEEEEccC----CCCccCHHHc---CCCC----EEEEeeccc
Confidence 0 2567889999999875 5679999999 8999 999999876
No 74
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.29 E-value=0.051 Score=53.91 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcC----CCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLL----PHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKD 276 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~L----Ga~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~ 276 (452)
++.-.||+|.|+|-+|.|..+.+... |... ++-. ++ || .+++..+.....
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~------~eA~---------------~~---i~--lvD~~Gll~~~r 75 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSE------EEAR---------------KR---IW--LVDSKGLLTDDR 75 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-H------HHHH---------------TT---EE--EEETTEEEBTTT
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCH------HHHh---------------cc---EE--EEeccceEeccC
Confidence 57789999999999999999988876 6421 0000 11 33 233332222111
Q ss_pred C-----CCCCcccccccCcCCcCcchHhhhcCCC--cEEEeccccCCCCCcccCHHHHHHhhc---CCCCeEEEEEeee
Q 012946 277 S-----SRAFDKNDYYEHPEQYNPIFHEKIAPYA--SAIINCIYWEKQFPRLLSTQQLRDLAQ---KGCPLVGISDLTC 345 (452)
Q Consensus 277 ~-----~~~~~~~~~~~~~e~y~~~f~~~~~~~~--DIvIn~a~~~~~~P~Lit~e~l~~mk~---gs~~l~vIvDvs~ 345 (452)
. ...|++.. ++..-...+ .+.++.+ ||||.+.- .|-++|+|.|+.|.+ .. +|.=+|-
T Consensus 76 ~~l~~~~~~~a~~~---~~~~~~~~L-~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erP----IIF~LSN 142 (255)
T PF03949_consen 76 EDLNPHKKPFARKT---NPEKDWGSL-LEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERP----IIFPLSN 142 (255)
T ss_dssp SSHSHHHHHHHBSS---STTT--SSH-HHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSE----EEEE-SS
T ss_pred ccCChhhhhhhccC---cccccccCH-HHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCC----EEEECCC
Confidence 0 11222211 111000133 6777788 99999865 466899999999955 44 6766664
No 75
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.29 E-value=0.037 Score=55.99 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=54.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE----eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF----VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRA 280 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v----v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~ 280 (452)
..++|-|.|-||+|..+.++.+|+.| ++| ...++.. | . +
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDP--I~ALQAa--------M---e------------------------G 257 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDP--ICALQAA--------M---E------------------------G 257 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCc--hHHHHHH--------h---h------------------------c
Confidence 56788999999999999999999987 333 2233210 0 0 1
Q ss_pred CcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCC
Q 012946 281 FDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKG 334 (452)
Q Consensus 281 ~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs 334 (452)
| +-.-+.+.+++.||+|+|-- ---+|+.+..++||.+.
T Consensus 258 ~------------~V~tm~ea~~e~difVTtTG----c~dii~~~H~~~mk~d~ 295 (434)
T KOG1370|consen 258 Y------------EVTTLEEAIREVDIFVTTTG----CKDIITGEHFDQMKNDA 295 (434)
T ss_pred c------------EeeeHHHhhhcCCEEEEccC----CcchhhHHHHHhCcCCc
Confidence 1 11112667889999999853 33489999999999988
No 76
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.26 E-value=0.074 Score=54.03 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.| .+|+.-...+.+-|+.|. ++ +. .
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-----------------------------v~-------~~---~---- 192 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-----------------------------VV-------HS---R---- 192 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-----------------------------EE-------CC---C----
Confidence 4567899999996 999999999988776651 11 00 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
. .+ .++.++.+||||.++-- |.+|+.+++ |+|. +|||++...
T Consensus 193 --t-----~~--------l~e~~~~ADIVIsavg~----~~~v~~~~i---k~Ga----iVIDvgin~ 234 (301)
T PRK14194 193 --S-----TD--------AKALCRQADIVVAAVGR----PRLIDADWL---KPGA----VVIDVGINR 234 (301)
T ss_pred --C-----CC--------HHHHHhcCCEEEEecCC----hhcccHhhc---cCCc----EEEEecccc
Confidence 0 01 15677889999999843 468888884 9999 999999764
No 77
>PRK12861 malic enzyme; Reviewed
Probab=95.18 E-value=0.07 Score=60.45 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=85.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccc--cCC--
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVE--PKD-- 276 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~--~~~-- 276 (452)
.+.-.||+|.|+|-+|.|..+.+...|... ++ ++ .+++..... +.+
T Consensus 186 ~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~-------------------------~~---i~--~~D~~Gli~~~r~~~l 235 (764)
T PRK12861 186 SIKEVKVVTSGAGAAALACLDLLVDLGLPV-------------------------EN---IW--VTDIEGVVYRGRTTLM 235 (764)
T ss_pred ChhHcEEEEECHhHHHHHHHHHHHHcCCCh-------------------------hh---EE--EEcCCCeeeCCCcccC
Confidence 667899999999999999999999888631 00 11 111111110 100
Q ss_pred --CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeee
Q 012946 277 --SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEIL 354 (452)
Q Consensus 277 --~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~ 354 (452)
....|++.. ++ .. +.+.++.+||+|.+. .|-++|+|+|+.|.+.. +|.=+|--. -|++
T Consensus 236 ~~~k~~~a~~~---~~----~~-L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~P----IIFaLsNPt---pE~~ 295 (764)
T PRK12861 236 DPDKERFAQET---DA----RT-LAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARP----LILALANPT---PEIF 295 (764)
T ss_pred CHHHHHHHhhc---CC----CC-HHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCC----EEEECCCCC---ccCC
Confidence 011233221 12 23 378888999999975 26799999999997666 777666433 1321
Q ss_pred c---ccccCCCCEEE----eCCCC--CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHH
Q 012946 355 N---QTTTIDSPFFR----YDPKN--DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLS 408 (452)
Q Consensus 355 ~---~~Tt~~~P~~~----~~~~~--~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~ 408 (452)
- +.|. .+-++- +.|++ +-...+--..|........++-+|=..|+..+++..-
T Consensus 296 pe~a~~~~-g~aivaTGrs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 296 PELAHATR-DDVVIATGRSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred HHHHHhcC-CCEEEEeCCcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 0 0000 000110 00100 0000111123444466677788888888888887553
No 78
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.12 Score=52.06 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. .+||+-...++.+-||.|. .|.- .++
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-------------------------------ichs------~T~---- 190 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVT-------------------------------LAHS------KTQ---- 190 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-------------------------------EeCC------CCC----
Confidence 445678999998 5699999999988776651 1100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ ++++++.+||||.++- .|.||+.+|+ |+|. +|||+....
T Consensus 191 ---------~--------l~~~~~~ADIvIsAvG----kp~~i~~~~v---k~Ga----vVIDVGin~ 230 (287)
T PRK14173 191 ---------D--------LPAVTRRADVLVVAVG----RPHLITPEMV---RPGA----VVVDVGINR 230 (287)
T ss_pred ---------C--------HHHHHhhCCEEEEecC----CcCccCHHHc---CCCC----EEEEccCcc
Confidence 0 2567889999999873 5679999998 8999 999999765
No 79
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.12 Score=52.08 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|.+ .||+--..++.+-||.|. .|.- .+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-------------------------------ichs------~T----- 191 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-------------------------------IAHS------RT----- 191 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCC------CC-----
Confidence 4556889999985 599999998888766651 1100 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ + +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 192 ----------~-~-----l~~~~~~ADIvI~AvG----~~~~i~~~~v---k~Ga----vVIDvGin~ 232 (284)
T PRK14170 192 ----------K-D-----LPQVAKEADILVVATG----LAKFVKKDYI---KPGA----IVIDVGMDR 232 (284)
T ss_pred ----------C-C-----HHHHHhhCCEEEEecC----CcCccCHHHc---CCCC----EEEEccCcc
Confidence 0 0 2567889999999874 4669999999 8999 999999875
No 80
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.15 Score=51.33 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=57.4
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. .+||+-...++..-||.|. .|.- .++
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-------------------------------ichs------~T~---- 191 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-------------------------------IAHS------KTR---- 191 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEE-------------------------------EECC------CCC----
Confidence 445688999998 5599999999988776651 1100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 192 ---------~--------l~~~~~~ADIvI~AvG----~p~~i~~~~v---k~Ga----vVIDvGin~ 231 (282)
T PRK14169 192 ---------N--------LKQLTKEADILVVAVG----VPHFIGADAV---KPGA----VVIDVGISR 231 (282)
T ss_pred ---------C--------HHHHHhhCCEEEEccC----CcCccCHHHc---CCCc----EEEEeeccc
Confidence 0 2567889999999875 4668999998 8999 999999775
No 81
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.85 E-value=0.17 Score=50.80 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .|.- .++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-------------------------------~chs------~T~---- 193 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-------------------------------ICHS------KTK---- 193 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEE-------------------------------EeCC------CCC----
Confidence 345578999998 5699999999988776651 1100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 194 ---------~--------l~~~~~~ADIvIsAvG----kp~~i~~~~i---k~ga----vVIDvGin~ 233 (278)
T PRK14172 194 ---------N--------LKEVCKKADILVVAIG----RPKFIDEEYV---KEGA----IVIDVGTSS 233 (278)
T ss_pred ---------C--------HHHHHhhCCEEEEcCC----CcCccCHHHc---CCCc----EEEEeeccc
Confidence 0 2567888999999874 5669999998 8999 999997765
No 82
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.83 E-value=0.091 Score=59.54 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccc--cCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVE--PKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~--~~~~~ 278 (452)
++.-.||+|.|+|-+|.|..+.+...|... ++ ++ .+++..... +.++-
T Consensus 182 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~------~~----------------------i~--~~D~~G~i~~~r~~~~ 231 (752)
T PRK07232 182 KIEDVKIVVSGAGAAAIACLNLLVALGAKK------EN----------------------II--VCDSKGVIYKGRTEGM 231 (752)
T ss_pred ChhhcEEEEECccHHHHHHHHHHHHcCCCc------cc----------------------EE--EEcCCCeecCCCcccc
Confidence 667899999999999999999999887630 00 11 111111110 10000
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeee-ccc
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEIL-NQT 357 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~-~~~ 357 (452)
...+..|- +..+. .. +.+.++.+||+|.... |-++|+|+|+.|.+.. +|.=+|--. -|++ ...
T Consensus 232 -~~~k~~~a-~~~~~-~~-l~~~i~~~~v~iG~s~-----~g~~~~~~v~~M~~~p----iifalsNP~---~E~~p~~a 295 (752)
T PRK07232 232 -DEWKAAYA-VDTDA-RT-LAEAIEGADVFLGLSA-----AGVLTPEMVKSMADNP----IIFALANPD---PEITPEEA 295 (752)
T ss_pred -cHHHHHHh-ccCCC-CC-HHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCC----EEEecCCCC---ccCCHHHH
Confidence 00011111 11111 23 3788888999998742 6799999999997666 777676432 1321 000
Q ss_pred ccCCC-CEEE----eCCCC--CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 358 TTIDS-PFFR----YDPKN--DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 358 Tt~~~-P~~~----~~~~~--~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
-.+.+ -++- +.|++ +...-+--..|+.......++.+|=..|+..+++..-.
T Consensus 296 ~~~~~~~i~atGrs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~ 354 (752)
T PRK07232 296 KAVRPDAIIATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELARE 354 (752)
T ss_pred HHhcCCEEEEECCcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhccc
Confidence 01100 0111 00111 11111112235555677788888888999988886544
No 83
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.12 Score=52.08 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=57.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. |.+|+--...+.+-|+.|. + | +. .+
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-----------------------------v--~-----~s-~t----- 192 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-----------------------------L--T-----HS-RT----- 192 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-----------------------------E--E-----CC-CC-----
Confidence 455688999999 9999999999988776651 0 1 00 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ +++.++.+||||.++- .|.+|+.+++ ++|. +|||++...
T Consensus 193 --------~~--------l~~~~~~ADIVI~avg----~~~~v~~~~i---k~Ga----vVIDvgin~ 233 (284)
T PRK14179 193 --------RN--------LAEVARKADILVVAIG----RGHFVTKEFV---KEGA----VVIDVGMNR 233 (284)
T ss_pred --------CC--------HHHHHhhCCEEEEecC----ccccCCHHHc---cCCc----EEEEeccee
Confidence 01 2567888999999875 4558898885 9999 999999875
No 84
>PLN02477 glutamate dehydrogenase
Probab=94.70 E-value=0.083 Score=55.93 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++...+|+|.|.|+||+.+++.+.+.|++|
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakV 232 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKI 232 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEE
Confidence 556789999999999999999999999987
No 85
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.21 Score=50.36 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .|+-.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-------------------------------~chs~------------ 190 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVS-------------------------------VCHIK------------ 190 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCCC------------
Confidence 455688999998 5599999999988766651 11100
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ + ++++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 191 --T~-----n--------l~~~~~~ADIvIsAvG----kp~~i~~~~v---k~Ga----vVIDvGin~ 232 (282)
T PRK14166 191 --TK-----D--------LSLYTRQADLIIVAAG----CVNLLRSDMV---KEGV----IVVDVGINR 232 (282)
T ss_pred --CC-----C--------HHHHHhhCCEEEEcCC----CcCccCHHHc---CCCC----EEEEecccc
Confidence 00 1 2567889999999874 5669999998 8999 999999765
No 86
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.55 E-value=0.2 Score=50.81 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=57.2
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .| .- .++
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt------------------v~-------------hs------~T~---- 193 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVT------------------IA-------------HS------RTQ---- 193 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEE------------------Ee-------------CC------CCC----
Confidence 445688999998 5699999999988777651 01 00 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.+|+.+|+ |+|. +|||+....
T Consensus 194 ---------~--------l~~~~~~ADIvIsAvG----kp~~i~~~~i---k~ga----vVIDvGin~ 233 (297)
T PRK14186 194 ---------D--------LASITREADILVAAAG----RPNLIGAEMV---KPGA----VVVDVGIHR 233 (297)
T ss_pred ---------C--------HHHHHhhCCEEEEccC----CcCccCHHHc---CCCC----EEEEecccc
Confidence 0 2567889999999875 4569999998 8999 999998764
No 87
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.54 E-value=0.2 Score=49.65 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=25.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+|.+|+.++..+...|+.+
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v 143 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNV 143 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999876
No 88
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.51 E-value=0.26 Score=44.54 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=55.4
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..+|.-....+.+-|+.|. .|.-. +
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-------------------------------~~~~~------t----- 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-------------------------------SCDWK------T----- 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-------------------------------EeCCC------C-----
Confidence 556788999998 5599988888887766551 01000 0
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ . +++.++.+||||++.--+ .+|+.+++ |||+ +|+|+..+.
T Consensus 63 ---~------------~-l~~~v~~ADIVvsAtg~~----~~i~~~~i---kpGa----~Vidvg~~~ 103 (140)
T cd05212 63 ---I------------Q-LQSKVHDADVVVVGSPKP----EKVPTEWI---KPGA----TVINCSPTK 103 (140)
T ss_pred ---c------------C-HHHHHhhCCEEEEecCCC----CccCHHHc---CCCC----EEEEcCCCc
Confidence 0 0 255788999999987543 58999987 9999 899887665
No 89
>PRK12862 malic enzyme; Reviewed
Probab=94.48 E-value=0.11 Score=59.19 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=88.3
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccc--cCC--
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVE--PKD-- 276 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~--~~~-- 276 (452)
.+.-.+|+|.|+|-+|.|..+.+...|... ++ ++ .+++..... +.+
T Consensus 190 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~------~~----------------------i~--~~D~~G~i~~~r~~~l 239 (763)
T PRK12862 190 DIEDVKLVASGAGAAALACLDLLVSLGVKR------EN----------------------IW--VTDIKGVVYEGRTELM 239 (763)
T ss_pred ChhhcEEEEEChhHHHHHHHHHHHHcCCCc------cc----------------------EE--EEcCCCeeeCCCCccc
Confidence 667799999999999999999999988631 00 11 111111110 100
Q ss_pred --CCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeee
Q 012946 277 --SSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEIL 354 (452)
Q Consensus 277 --~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~ 354 (452)
....|++.. ++ .. +.+.++..||+|.+.- |-++|+|+|+.|.+.. +|.=+|--. -|++
T Consensus 240 ~~~~~~~a~~~---~~----~~-l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~p----iifalsNP~---~E~~ 299 (763)
T PRK12862 240 DPWKARYAQKT---DA----RT-LAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRP----LIFALANPT---PEIL 299 (763)
T ss_pred cHHHHHHhhhc---cc----CC-HHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCC----EEEeCCCCc---ccCC
Confidence 011233321 22 22 3778888999998753 5699999999997666 777676432 1321
Q ss_pred c-ccccCCC-CEEE----eCCCC--CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 355 N-QTTTIDS-PFFR----YDPKN--DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 355 ~-~~Tt~~~-P~~~----~~~~~--~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
- ..=.+.+ -++- +.|++ +...-+--..|+.......++-+|-..|+..+++..-+
T Consensus 300 p~~a~~~~~~~i~atGrs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~ 362 (763)
T PRK12862 300 PEEARAVRPDAIIATGRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELARE 362 (763)
T ss_pred HHHHHHhcCCEEEEECCcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcccc
Confidence 0 0000100 0111 00110 11111112345566677778888888888888885543
No 90
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.43 E-value=0.17 Score=52.53 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+-...++.+-||.|. .|.- .++
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-------------------------------icHs------~T~---- 266 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVS-------------------------------IVHS------RTK---- 266 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEE-------------------------------EeCC------CCC----
Confidence 455678999998 5599999999988776651 1100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.||+.+|+ |+|. +|||+....
T Consensus 267 ---------n--------l~~~~r~ADIVIsAvG----kp~~i~~d~v---K~GA----vVIDVGIn~ 306 (364)
T PLN02616 267 ---------N--------PEEITREADIIISAVG----QPNMVRGSWI---KPGA----VVIDVGINP 306 (364)
T ss_pred ---------C--------HHHHHhhCCEEEEcCC----CcCcCCHHHc---CCCC----EEEeccccc
Confidence 1 2567889999999874 5669999999 8999 999998765
No 91
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.23 Score=50.17 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=32.3
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 195 ~~~~~~ADIvV~AvG----~p~~i~~~~i---k~Ga----vVIDvGin~ 232 (287)
T PRK14181 195 TEILKTADIIIAAIG----VPLFIKEEMI---AEKA----VIVDVGTSR 232 (287)
T ss_pred HHHHhhCCEEEEccC----CcCccCHHHc---CCCC----EEEEecccc
Confidence 667889999999874 4569999998 8999 999998664
No 92
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.33 E-value=0.14 Score=51.32 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
++.-.+++|+|.++ ||+--...+..-+|+|. .|.-. ++
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-------------------------------vcHs~------T~---- 191 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVT-------------------------------VCHSR------TK---- 191 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-------------------------------EEcCC------CC----
Confidence 56778999999987 99998888888766551 11110 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeec
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCD 346 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D 346 (452)
+ +..+++.+||||.++. .|.||+.+|+ |+|+ +|+|+...
T Consensus 192 ---------~--------l~~~~k~ADIvv~AvG----~p~~i~~d~v---k~ga----vVIDVGin 230 (283)
T COG0190 192 ---------D--------LASITKNADIVVVAVG----KPHFIKADMV---KPGA----VVIDVGIN 230 (283)
T ss_pred ---------C--------HHHHhhhCCEEEEecC----Cccccccccc---cCCC----EEEecCCc
Confidence 1 2667889999999875 5779999988 9999 99999875
No 93
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.29 E-value=0.17 Score=52.16 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCc-HHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGSG-HASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~G-~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|-+ .||+-...++.+-||.|. .|.- .+
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-------------------------------icHs------~T----- 248 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-------------------------------TVHA------FT----- 248 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEE-------------------------------EEcC------CC-----
Confidence 4556889999985 599999999988776651 0100 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ + +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 249 ---~-----n--------l~~~~~~ADIvIsAvG----kp~~v~~d~v---k~Ga----vVIDVGin~ 289 (345)
T PLN02897 249 ---K-----D--------PEQITRKADIVIAAAG----IPNLVRGSWL---KPGA----VVIDVGTTP 289 (345)
T ss_pred ---C-----C--------HHHHHhhCCEEEEccC----CcCccCHHHc---CCCC----EEEEccccc
Confidence 0 1 2567889999999875 4569999998 8999 999998765
No 94
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.28 E-value=0.25 Score=49.83 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.7
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++- .|.||+.+|+ |+|. +|||+....
T Consensus 198 ~~~~k~ADIvV~AvG----kp~~i~~~~i---k~Ga----vVIDvGin~ 235 (284)
T PRK14193 198 AAHTRRADIIVAAAG----VAHLVTADMV---KPGA----AVLDVGVSR 235 (284)
T ss_pred HHHHHhCCEEEEecC----CcCccCHHHc---CCCC----EEEEccccc
Confidence 567889999999875 4569999998 8999 999999876
No 95
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.27 E-value=0.57 Score=48.49 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=31.2
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeec
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCD 346 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D 346 (452)
.+.++.+|+||+++..+. +..++.+++ +++. +|||++--
T Consensus 210 ~~~l~~aDiVv~~ts~~~--~~~I~~~~l---~~~~----~viDiAvP 248 (340)
T PRK14982 210 EEALPEADIVVWVASMPK--GVEIDPETL---KKPC----LMIDGGYP 248 (340)
T ss_pred HHHHccCCEEEECCcCCc--CCcCCHHHh---CCCe----EEEEecCC
Confidence 467788999999997765 456888877 6777 99999953
No 96
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.18 E-value=0.25 Score=49.78 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+--..++.+-||.|. .|.-. ++
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-------------------------------~chs~------T~---- 194 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-------------------------------LCHSK------TQ---- 194 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-------------------------------EeCCC------CC----
Confidence 455688999998 5599999999988776651 11100 00
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 195 ---------~--------l~~~~~~ADIvIsAvG----k~~~i~~~~i---k~ga----vVIDvGin~ 234 (284)
T PRK14177 195 ---------N--------LPSIVRQADIIVGAVG----KPEFIKADWI---SEGA----VLLDAGYNP 234 (284)
T ss_pred ---------C--------HHHHHhhCCEEEEeCC----CcCccCHHHc---CCCC----EEEEecCcc
Confidence 0 2567889999998764 5669999998 8999 999999864
No 97
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.17 E-value=0.14 Score=49.83 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++...+|+|.|.|+||+.+++.+.+.|+++
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~v 57 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKV 57 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 557799999999999999999999999987
No 98
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.10 E-value=0.12 Score=56.59 Aligned_cols=301 Identities=17% Similarity=0.227 Sum_probs=149.9
Q ss_pred ChHHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccc---cc---------cc-cEEEEecCCCcccccCC
Q 012946 24 TPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSD---LS---------EC-GLILGIKKPKLEMILPD 90 (452)
Q Consensus 24 tP~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~---~~---------~~-diIl~Vkep~~~~l~~~ 90 (452)
.|.++.+++++.. .+.++|.|=+.-.|...--+.=-.|--|... +. .| .|+|.|.- .-++++..
T Consensus 156 d~~~i~~~l~n~p--~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGT-nNe~LL~D 232 (581)
T PLN03129 156 DKGRVLSMLKNWP--ERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGT-NNEKLLND 232 (581)
T ss_pred CHHHHHHHHhcCC--CcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCC-CchhhccC
Confidence 3566777776541 2345666666554333322222224444321 11 12 45555421 11234444
Q ss_pred CceEEEecccCCCCCC--HHHHHHHH----Hc--CCeEEEeecccccCCCc-------cccch-hHHHHHHHHHHHHHHH
Q 012946 91 RAYAFFSHTHKAQPEN--MALLDKIL----AQ--RVSLFDYELVEGNQGKR-------RLIAF-GKFAGRAAIIDLLKGL 154 (452)
Q Consensus 91 ~~~~~fs~~~~~q~~n--~~ll~~l~----~k--~it~i~~E~i~~~~g~~-------~L~s~-~~~AG~~avi~al~~~ 154 (452)
. +++|+=++--.+. -++++.++ +. .-++|-||.+..++-.+ ..-.| --+-|.++|. +
T Consensus 233 P--~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~-----l 305 (581)
T PLN03129 233 P--FYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVA-----L 305 (581)
T ss_pred c--cccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHH-----H
Confidence 3 6667666543211 23344333 21 22578888886433211 02223 3567777776 3
Q ss_pred HHHHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eC
Q 012946 155 GQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF--VD 232 (452)
Q Consensus 155 g~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~ 232 (452)
+. +++|++-+| +.+.-.+|+|.|+|-||.|.++.+....... ++
T Consensus 306 Ag-------------------------ll~A~r~~g---------~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls 351 (581)
T PLN03129 306 AG-------------------------LLAALRATG---------GDLADQRILFAGAGEAGTGIAELIALAMSRQTGIS 351 (581)
T ss_pred HH-------------------------HHHHHHHhC---------CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCC
Confidence 33 333444333 3667899999999999999999887732210 11
Q ss_pred CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccC--C----CCCCCcccccccCcCCcCcchHhhhcCC--
Q 012946 233 PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPK--D----SSRAFDKNDYYEHPEQYNPIFHEKIAPY-- 304 (452)
Q Consensus 233 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~--~----~~~~~~~~~~~~~~e~y~~~f~~~~~~~-- 304 (452)
.++.+ + .|| .+++..+.... + ....|++. .+.. ..+ .+.++.
T Consensus 352 ~eeA~------------------~---~i~--~vD~~GLi~~~r~~~l~~~k~~fa~~-----~~~~-~~L-~e~v~~vk 401 (581)
T PLN03129 352 EEEAR------------------K---RIW--LVDSKGLVTKSRKDSLQPFKKPFAHD-----HEPG-ASL-LEAVKAIK 401 (581)
T ss_pred hhhhc------------------C---cEE--EEcCCCeEeCCCCccChHHHHHHHhh-----cccC-CCH-HHHHhccC
Confidence 11110 1 132 23333222111 1 01123321 1111 233 667777
Q ss_pred CcEEEeccccCCCCCcccCHHHHHHhh---cCCCCeEEEEEeeecC--------------CCCeeeecccccCCCCEEEe
Q 012946 305 ASAIINCIYWEKQFPRLLSTQQLRDLA---QKGCPLVGISDLTCDM--------------EGSIEILNQTTTIDSPFFRY 367 (452)
Q Consensus 305 ~DIvIn~a~~~~~~P~Lit~e~l~~mk---~gs~~l~vIvDvs~D~--------------gG~iE~~~~~Tt~~~P~~~~ 367 (452)
.||+|.+.-.+ -++|+|+|+.|. +.. +|.=+|--. .|.+=+-+ .|+=.|+ +|
T Consensus 402 ptvLIG~S~~~----g~Ft~evi~~Ma~~~~rP----IIFaLSNPt~~~E~~pe~a~~~T~G~ai~At--GSPf~pv-~~ 470 (581)
T PLN03129 402 PTVLIGLSGVG----GTFTKEVLEAMASLNERP----IIFALSNPTSKAECTAEEAYTWTGGRAIFAS--GSPFDPV-EY 470 (581)
T ss_pred CCEEEEecCCC----CCCCHHHHHHHHhcCCCC----EEEECCCCCCCcCcCHHHHHHhhcCCEEEEe--CCCCCCe-ee
Confidence 89999976554 489999999994 444 676676321 23322211 1222332 22
Q ss_pred CCCCC-------CCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 368 DPKND-------SYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 368 ~~~~~-------~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
+..+. ...-+--.-|+.......++.+|=..|+..+++...+
T Consensus 471 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~ 519 (581)
T PLN03129 471 NGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTE 519 (581)
T ss_pred CCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCc
Confidence 21111 0011112345666788889999999999998885543
No 99
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.00 E-value=0.26 Score=50.07 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=32.3
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++ ..|.||+.+|+ |+|. +|||+....
T Consensus 203 ~~~~~~ADIvVsAv----Gkp~~i~~~~i---k~ga----vVIDvGin~ 240 (297)
T PRK14168 203 ARHCQRADILIVAA----GVPNLVKPEWI---KPGA----TVIDVGVNR 240 (297)
T ss_pred HHHHhhCCEEEEec----CCcCccCHHHc---CCCC----EEEecCCCc
Confidence 56788999999987 35669999998 8999 999998654
No 100
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.93 E-value=0.18 Score=48.10 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=31.6
Q ss_pred hhhcCCCcEEEeccccCCCCCcc-cCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRL-LSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~L-it~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++- .|.| |+.+|+ |+|. +|||+..+.
T Consensus 121 ~~~~~~ADIVIsAvG----~~~~~i~~d~i---k~Ga----vVIDVGi~~ 159 (197)
T cd01079 121 LDCLSQSDVVITGVP----SPNYKVPTELL---KDGA----ICINFASIK 159 (197)
T ss_pred HHHhhhCCEEEEccC----CCCCccCHHHc---CCCc----EEEEcCCCc
Confidence 678899999999874 3446 999998 8999 999998653
No 101
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.27 Score=49.54 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC-EE--eC--CCChhhHHh
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH-TF--VD--PSRLPELFE 241 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa-~v--v~--~~~l~~~~e 241 (452)
...-.+|+|+|+|-++++++..+..+|+ ++ ++ .++.+++.+
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 3345789999999999999999999997 23 32 334466653
No 102
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.68 E-value=0.42 Score=48.24 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+...+|+|+|+|-++++++..+..+|+
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~ 148 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGL 148 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 3456789999999999988887888898
No 103
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.67 E-value=0.23 Score=52.33 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEe
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFV 231 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv 231 (452)
++..++|+|-|.|+||.-|++-+.++||+||
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvv 234 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVV 234 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEE
Confidence 4788999999999999999999999999883
No 104
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.67 E-value=0.42 Score=48.43 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=57.0
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+|. ..||+--..++.+-||.|. .|.-.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-------------------------------~chs~------------ 193 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-------------------------------TVHSA------------ 193 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEE-------------------------------EeCCC------------
Confidence 445678999998 5599999999988776651 11000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.+ + +.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 194 --T~-----~--------l~~~~~~ADIvVsAvG----kp~~i~~~~i---k~ga----iVIDVGin~ 235 (294)
T PRK14187 194 --TR-----D--------LADYCSKADILVAAVG----IPNFVKYSWI---KKGA----IVIDVGINS 235 (294)
T ss_pred --CC-----C--------HHHHHhhCCEEEEccC----CcCccCHHHc---CCCC----EEEEecccc
Confidence 00 0 2567889999999874 5669999999 8999 999998754
No 105
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.64 E-value=0.25 Score=49.68 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=24.4
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
+...+++|+|+|-+|++++..+..+|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~ 151 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAK 151 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence 3457899999999999999999999995
No 106
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=93.59 E-value=0.42 Score=49.26 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=37.0
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.+.++++|+||-|.-..+.+-.||+++-+..||+|. +||-++
T Consensus 212 ~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~----vlVN~a 253 (336)
T KOG0069|consen 212 EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGA----VLVNTA 253 (336)
T ss_pred HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCe----EEEecc
Confidence 567888999999888887788899999999999999 888776
No 107
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=0.41 Score=48.62 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=32.1
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
..+++.+||||.++-- |.+|+.+|+ |+|+ +|||+....
T Consensus 199 ~~~~~~ADIvIsAvGk----p~~i~~~~i---k~ga----iVIDvGin~ 236 (297)
T PRK14167 199 AAKTRRADIVVAAAGV----PELIDGSML---SEGA----TVIDVGINR 236 (297)
T ss_pred HHHHhhCCEEEEccCC----cCccCHHHc---CCCC----EEEEccccc
Confidence 5678899999998754 559999998 8999 999998665
No 108
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.18 E-value=0.095 Score=55.96 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++...+|+|-|.|+||..|++.+..+||+|
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~Gakv 254 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKV 254 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 456789999999999999999999999987
No 109
>PRK13529 malate dehydrogenase; Provisional
Probab=92.67 E-value=0.23 Score=54.32 Aligned_cols=301 Identities=15% Similarity=0.211 Sum_probs=150.1
Q ss_pred HHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccc---cc---------cc-cEEEEecCCCcccccCCCc
Q 012946 26 SHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSD---LS---------EC-GLILGIKKPKLEMILPDRA 92 (452)
Q Consensus 26 ~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~---~~---------~~-diIl~Vkep~~~~l~~~~~ 92 (452)
.++.++.++- ..+.++|.|=+.-.|...--+.=.+|--|... ++ .| .|.|.|.- .-++++...
T Consensus 133 g~i~~~l~nw--p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGT-nNe~Ll~DP- 208 (563)
T PRK13529 133 DRIEDILQNA--PNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGT-NNEQLLNDP- 208 (563)
T ss_pred HHHHHHHhcC--CcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCC-CchhhccCc-
Confidence 4455555542 12456777766664433333333355555432 11 11 34444421 112333333
Q ss_pred eEEEecccCCCCCC--HHHHHHHHH------cCCeEEEeecccccCCC--------ccccchhHHHHHHHHHHHHHHHHH
Q 012946 93 YAFFSHTHKAQPEN--MALLDKILA------QRVSLFDYELVEGNQGK--------RRLIAFGKFAGRAAIIDLLKGLGQ 156 (452)
Q Consensus 93 ~~~fs~~~~~q~~n--~~ll~~l~~------k~it~i~~E~i~~~~g~--------~~L~s~~~~AG~~avi~al~~~g~ 156 (452)
+++|+-||--.+. -++++.+++ -+ .+|-+|.+...+-. +...-.--+-|..+|. ++.
T Consensus 209 -~YlG~r~~R~~g~eY~~f~defv~av~~~~P~-~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~-----LAg 281 (563)
T PRK13529 209 -LYLGWRHPRIRGEEYDEFVDEFVQAVKRRFPN-ALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVT-----LAG 281 (563)
T ss_pred -cccCcCCCCCchHHHHHHHHHHHHHHHHhCCC-eEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHH-----HHH
Confidence 6677777644221 244444442 23 48999998643211 1012223577777776 333
Q ss_pred HHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhc----CCCEEeC
Q 012946 157 RYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKL----LPHTFVD 232 (452)
Q Consensus 157 ~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~----LGa~vv~ 232 (452)
+++|++-+| +.+.-.+|+|.|+|-||.|.++.+.. .|..
T Consensus 282 -------------------------ll~A~r~~g---------~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~--- 324 (563)
T PRK13529 282 -------------------------LLAALKITG---------EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLS--- 324 (563)
T ss_pred -------------------------HHHHHHHhC---------CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCC---
Confidence 333444333 35677999999999999999988876 3431
Q ss_pred CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccC-----CCCCCCcccc--cccCc-CCcCcchHhhhcCC
Q 012946 233 PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPK-----DSSRAFDKND--YYEHP-EQYNPIFHEKIAPY 304 (452)
Q Consensus 233 ~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~-----~~~~~~~~~~--~~~~~-e~y~~~f~~~~~~~ 304 (452)
.++. .+ .|| .+++..+.... +....|++.. ....+ +.-... +.+.++.
T Consensus 325 ~eeA------------------~~---~i~--~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~-L~e~v~~ 380 (563)
T PRK13529 325 EEEA------------------RK---RFF--MVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS-LLEVVRN 380 (563)
T ss_pred hhHh------------------cC---eEE--EEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC-HHHHHhc
Confidence 0000 01 122 12222211110 0112333321 00000 000012 3677877
Q ss_pred C--cEEEeccccCCCCCcccCHHHHHHhhc---CCCCeEEEEEeeecC--------------CCCeeeecccccCCCCEE
Q 012946 305 A--SAIINCIYWEKQFPRLLSTQQLRDLAQ---KGCPLVGISDLTCDM--------------EGSIEILNQTTTIDSPFF 365 (452)
Q Consensus 305 ~--DIvIn~a~~~~~~P~Lit~e~l~~mk~---gs~~l~vIvDvs~D~--------------gG~iE~~~~~Tt~~~P~~ 365 (452)
+ ||+|.+.-.+ -++|+|+|+.|.+ .. +|.=+|--. .|.+=+-+ .++-.|+
T Consensus 381 ~kPtvLIG~S~~~----g~Ft~evv~~Ma~~~erP----IIFaLSNPt~~aE~tpe~a~~~T~Grai~At--Gspf~pv- 449 (563)
T PRK13529 381 VKPTVLIGVSGQP----GAFTEEIVKEMAAHCERP----IIFPLSNPTSRAEATPEDLIAWTDGRALVAT--GSPFAPV- 449 (563)
T ss_pred cCCCEEEEecCCC----CCCCHHHHHHHHhcCCCC----EEEECCCcCCCcccCHHHHHHhhcCCEEEEE--CCCCCCe-
Confidence 7 9999976544 4899999999965 44 676666331 24322211 1222332
Q ss_pred EeCCCC-------CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 366 RYDPKN-------DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 366 ~~~~~~-------~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
+|+..+ +...-+--.-|+.......++.+|=..|+..+++...+
T Consensus 450 ~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~ 500 (563)
T PRK13529 450 EYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPL 500 (563)
T ss_pred eeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence 232111 11111112345666777889999999999998886654
No 110
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.65 E-value=0.63 Score=47.18 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.1
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
.++++.+||||.++- .|.||+.+|+ |+|+ +|||+....
T Consensus 199 ~~~~~~ADIvIsAvG----kp~~i~~~~v---k~ga----vVIDvGin~ 236 (293)
T PRK14185 199 KKECLEADIIIAALG----QPEFVKADMV---KEGA----VVIDVGTTR 236 (293)
T ss_pred HHHHhhCCEEEEccC----CcCccCHHHc---CCCC----EEEEecCcc
Confidence 567889999999874 5669999998 8999 999998754
No 111
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.63 E-value=0.71 Score=49.43 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.-.+|+|.|.|+||..+++.+..+||+|
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkV 254 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKV 254 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 566789999999999999999999999988
No 112
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.53 E-value=0.47 Score=47.60 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=24.7
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
+...+|+|+|+|-+|+.++..+..+|+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~ 149 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV 149 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC
Confidence 456789999999999999999999998
No 113
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.46 E-value=0.49 Score=48.78 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEe--CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFV--DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv--~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
.+.-..+.|+|.|++|..-...++.+|-.++ +|-.-.+..++ +|+++.
T Consensus 143 el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------------~gvq~v----------- 192 (406)
T KOG0068|consen 143 ELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------------FGVQLV----------- 192 (406)
T ss_pred EEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------------ccceee-----------
Confidence 6677889999999999999999999999774 33222333221 222221
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccC--CCCCcccCHHHHHHhhcCCCCeEEEEEee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWE--KQFPRLLSTQQLRDLAQKGCPLVGISDLT 344 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~--~~~P~Lit~e~l~~mk~gs~~l~vIvDvs 344 (452)
.| +++++.+|.| |...| ..+-.+|+.+.+..||+|. -||.+|
T Consensus 193 -----------------sl-~Eil~~ADFi--tlH~PLtP~T~~lin~~tfA~mKkGV----riIN~a 236 (406)
T KOG0068|consen 193 -----------------SL-EEILPKADFI--TLHVPLTPSTEKLLNDETFAKMKKGV----RIINVA 236 (406)
T ss_pred -----------------eH-HHHHhhcCEE--EEccCCCcchhhccCHHHHHHhhCCc----EEEEec
Confidence 12 6678888876 33344 3456899999999999998 666655
No 114
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.10 E-value=0.48 Score=48.13 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCCCceEEEEc-CcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 201 GICPLVFVFTG-SGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 201 ~i~p~kv~V~G-~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+.-.+|+|+| .|.+|...+..+..-|+.|. + |+. .+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-----------------------------v-------~~~-rT~---- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-----------------------------I-------AHS-RTR---- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-----------------------------E-------ECC-CCC----
Confidence 45668999999 89999999998887665541 0 100 000
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecC
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDM 347 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~ 347 (452)
+ +++.++.+||||.++-- |.+|+.++ +++|. +|||++...
T Consensus 194 ---------~--------l~e~~~~ADIVIsavg~----~~~v~~~~---lk~Ga----vVIDvGin~ 233 (296)
T PRK14188 194 ---------D--------LPAVCRRADILVAAVGR----PEMVKGDW---IKPGA----TVIDVGINR 233 (296)
T ss_pred ---------C--------HHHHHhcCCEEEEecCC----hhhcchhe---ecCCC----EEEEcCCcc
Confidence 1 15677889999999765 44788777 59999 999998754
No 115
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.05 E-value=0.092 Score=43.18 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=20.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LG 227 (452)
||.|||+|+.|..-..-+.+.|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g 22 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASG 22 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999999988
No 116
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.92 E-value=0.38 Score=49.20 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=35.4
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+||||||- +...| +|+.+++ ++|. .|.++.+|.-+.-|+
T Consensus 189 ~~av~~aDiVvtaT--~s~~p-~i~~~~l---~~g~----~i~~vg~~~p~~rEl 233 (326)
T TIGR02992 189 RAAMSGADIIVTTT--PSETP-ILHAEWL---EPGQ----HVTAMGSDAEHKNEI 233 (326)
T ss_pred HHHhccCCEEEEec--CCCCc-EecHHHc---CCCc----EEEeeCCCCCCceec
Confidence 45678899999996 33445 7777776 8999 888999998888887
No 117
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.28 E-value=0.2 Score=50.54 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=58.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE-eCCCChh---hHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF-VDPSRLP---ELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRA 280 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~~~l~---~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~ 280 (452)
.||.+||.|+-|.....-+.+-|..+ +..+..+ +.... .|..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-----------~Ga~----------------------- 46 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-----------AGAT----------------------- 46 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH-----------cCCc-----------------------
Confidence 37999999999999999999999977 4333322 22210 0111
Q ss_pred CcccccccCcCCcCcchHhhhcCCCcEEEeccccCC-CCCcccC-HHHHHHhhcCCCCeEEEEEeee
Q 012946 281 FDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEK-QFPRLLS-TQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 281 ~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~-~~P~Lit-~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
...+| .+.+..+||||++..=+. -.-.++- ..-++.|+||. ++||+|.
T Consensus 47 -----~a~s~--------~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~----i~IDmST 96 (286)
T COG2084 47 -----VAASP--------AEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGA----IVIDMST 96 (286)
T ss_pred -----ccCCH--------HHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCC----EEEECCC
Confidence 11122 456788999999987653 1122222 34456689999 9999985
No 118
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.26 E-value=0.057 Score=49.42 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=52.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE-eC---CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF-VD---PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRA 280 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v-v~---~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~ 280 (452)
.+|.|||.|+.|.+-+.-+.+.|..| +. ++..+++.+. +.. .
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~------------g~~---~------------------- 47 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA------------GAE---V------------------- 47 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT------------TEE---E-------------------
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh------------hhh---h-------------------
Confidence 47999999999999999999999977 32 2233444421 110 0
Q ss_pred CcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCC-CcccCHHHHHHhhcCCCCeEEEEEeee
Q 012946 281 FDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQF-PRLLSTQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 281 ~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~-P~Lit~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
...| .+.+..+|+||.|...+... ..+...+-+..+++|. +|||.|.
T Consensus 48 ------~~s~--------~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~----iiid~sT 95 (163)
T PF03446_consen 48 ------ADSP--------AEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGK----IIIDMST 95 (163)
T ss_dssp ------ESSH--------HHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTE----EEEE-SS
T ss_pred ------hhhh--------hhHhhcccceEeecccchhhhhhhhhhHHhhccccce----EEEecCC
Confidence 0111 55677789999998876422 2333333344468888 9999874
No 119
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=91.20 E-value=0.49 Score=51.80 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=60.3
Q ss_pred hhhcCCC--cEEEeccccCCCCCcccCHHHHHHhhc---CCCCeEEEEEeeecC--------------CCCeeeeccccc
Q 012946 299 EKIAPYA--SAIINCIYWEKQFPRLLSTQQLRDLAQ---KGCPLVGISDLTCDM--------------EGSIEILNQTTT 359 (452)
Q Consensus 299 ~~~~~~~--DIvIn~a~~~~~~P~Lit~e~l~~mk~---gs~~l~vIvDvs~D~--------------gG~iE~~~~~Tt 359 (452)
.+.++.+ ||+|.+.-.+ -++|+|+|+.|.+ .. +|.=+|--. .|.+=+-+ .+
T Consensus 374 ~e~v~~~KPtvLIG~S~~~----g~Ft~evv~~Ma~~~~rP----IIFaLSNPt~~aE~tpeda~~~T~Grai~At--Gs 443 (559)
T PTZ00317 374 EDVVRFVKPTALLGLSGVG----GVFTEEVVKTMASNVERP----IIFPLSNPTSKAECTAEDAYKWTNGRAIVAS--GS 443 (559)
T ss_pred HHHHhccCCCEEEEecCCC----CCCCHHHHHHHHhcCCCC----EEEECCCCCCCCCcCHHHHHhhccCCEEEEE--CC
Confidence 7778888 9999976554 4899999999963 44 676666432 23322211 12
Q ss_pred CCCCEEEeC-----CCC--CCCCCCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 360 IDSPFFRYD-----PKN--DSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 360 ~~~P~~~~~-----~~~--~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
+-.|+ +|+ |.+ +...-+--.-|+.......++-+|=..|++.+++...+
T Consensus 444 pf~pv-~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~ 499 (559)
T PTZ00317 444 PFPPV-TLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSE 499 (559)
T ss_pred CCCCc-ccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCCc
Confidence 22232 222 111 11111112356677788889999999999998886644
No 120
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.12 E-value=0.64 Score=48.94 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=56.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC-CEE--eC--CCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP-HTF--VD--PSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG-a~v--v~--~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
.+|+|||+|.+|+.+++.+.+-| .+| ++ ++..+++.+. .+.+ +-..+++..|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-----------~~~~---v~~~~vD~~d--------- 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-----------IGGK---VEALQVDAAD--------- 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-----------cccc---ceeEEecccC---------
Confidence 57999999999999999999988 555 22 2334555421 1112 1112232111
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHH-HhhcCCCCeEEEEEeeec
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLR-DLAQKGCPLVGISDLTCD 346 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~-~mk~gs~~l~vIvDvs~D 346 (452)
. + -+.+.+++.|+|||++- ..++..-++ .++.|- =.+|+|-+
T Consensus 59 ----------~----~-al~~li~~~d~VIn~~p------~~~~~~i~ka~i~~gv----~yvDts~~ 101 (389)
T COG1748 59 ----------V----D-ALVALIKDFDLVINAAP------PFVDLTILKACIKTGV----DYVDTSYY 101 (389)
T ss_pred ----------h----H-HHHHHHhcCCEEEEeCC------chhhHHHHHHHHHhCC----CEEEcccC
Confidence 0 1 12677888899999964 344545443 347776 57777754
No 121
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=91.11 E-value=1.7 Score=46.05 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=25.0
Q ss_pred CCCceEEEEcC-----------------cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-----------------GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-----------------G~vg~gAi~~a~~LGa~v 230 (452)
+.-.+|+|+|+ |..|....+.+.+.||.|
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V 231 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADV 231 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEE
Confidence 34578999997 788999999999999988
No 122
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=90.92 E-value=2.1 Score=40.86 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=73.3
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE---eCCCC-hhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF---VDPSR-LPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v---v~~~~-l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
+||.|||+ |.||.--++-|+.-|++| ||... +.+.. + ..+...|.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~--------------~--------~~i~q~Di-------- 50 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ--------------G--------VTILQKDI-------- 50 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc--------------c--------ceeecccc--------
Confidence 58999998 999999999999999988 44322 22211 0 11111222
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccC--CCCC-cccCHH-HHHHhhc-CCCCeEEEEEeeecCCCCeeee
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWE--KQFP-RLLSTQ-QLRDLAQ-KGCPLVGISDLTCDMEGSIEIL 354 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~--~~~P-~Lit~e-~l~~mk~-gs~~l~vIvDvs~D~gG~iE~~ 354 (452)
|+ |+ -+++.+...|+||.+..-. ...+ ...+-+ .+..++. |..||+||. --|+.|.
T Consensus 51 -fd-------~~-----~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVG-----GAGSL~i- 111 (211)
T COG2910 51 -FD-------LT-----SLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVG-----GAGSLEI- 111 (211)
T ss_pred -cC-------hh-----hhHhhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEc-----CccceEE-
Confidence 11 11 1246677889999987644 3222 111222 3333455 677888764 3355665
Q ss_pred cccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcchHHHHH
Q 012946 355 NQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQ 401 (452)
Q Consensus 355 ~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp~~AS~ 401 (452)
..|+.++-.+..|.+.-.+|+.
T Consensus 112 -------------------------d~g~rLvD~p~fP~ey~~~A~~ 133 (211)
T COG2910 112 -------------------------DEGTRLVDTPDFPAEYKPEALA 133 (211)
T ss_pred -------------------------cCCceeecCCCCchhHHHHHHH
Confidence 1257777788889887666654
No 123
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.48 E-value=0.78 Score=46.17 Aligned_cols=27 Identities=15% Similarity=-0.090 Sum_probs=24.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
+...+|+|+|+|-+|++++..+..+|+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~ 151 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV 151 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC
Confidence 356789999999999999999999998
No 124
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.23 E-value=0.47 Score=45.94 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=27.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++...+|+|.|.|+||..+++.+.++|+.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~v 49 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKV 49 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEE
Confidence 556799999999999999999999999965
No 125
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.21 E-value=1.3 Score=45.74 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
++...+|+|+|+|-.|.-++.-+...|+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~ 198 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY 198 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC
Confidence 5678999999999999999999988875
No 126
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.66 E-value=1.2 Score=46.14 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+-.+|+|+|.|-+|.-|++.|+.+||+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~V 193 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEV 193 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeE
Confidence 4578999999999999999999999988
No 127
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.58 E-value=0.72 Score=47.47 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=87.7
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE-e--CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF-V--DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDS 277 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v-v--~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~ 277 (452)
.+.-.+|.|||.|+.|..-+.-++..|..| + ++..-.+..+. .
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-------------------~--------------- 58 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-------------------D--------------- 58 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-------------------c---------------
Confidence 445688999999999999999999999977 3 22111111100 0
Q ss_pred CCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeeccc
Q 012946 278 SRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQT 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~ 357 (452)
++. .. . +.+.++.+|||+.+.--+. ...++.++-+..||+|+ +++ .| -|=||-+ ...
T Consensus 59 --G~~---v~-s--------l~Eaak~ADVV~llLPd~~-t~~V~~~eil~~MK~Ga----iL~-f~--hgfni~~-~~i 115 (335)
T PRK13403 59 --GFE---VM-S--------VSEAVRTAQVVQMLLPDEQ-QAHVYKAEVEENLREGQ----MLL-FS--HGFNIHF-GQI 115 (335)
T ss_pred --CCE---EC-C--------HHHHHhcCCEEEEeCCChH-HHHHHHHHHHhcCCCCC----EEE-EC--CCcceec-Cce
Confidence 110 00 0 2678899999999987533 35778888888999998 443 33 3434433 111
Q ss_pred ccC-CCCEEEeCCCC--CCCCC-CCCCCCe-EEEeeCCcCCcchHHHHHHHHHHH
Q 012946 358 TTI-DSPFFRYDPKN--DSYHH-DMEGDGI-ICSVVDNLPTEFPKEASQHFGGLL 407 (452)
Q Consensus 358 Tt~-~~P~~~~~~~~--~~~~~-~~~~~gV-~~~~vdnLPs~lp~~AS~~fs~~l 407 (452)
.-+ +--++.+-|+- ..++. +..+.|| ..++|.+=++--+++=+..|+..+
T Consensus 116 ~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~i 170 (335)
T PRK13403 116 NPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGV 170 (335)
T ss_pred eCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHc
Confidence 000 11144443332 11111 1234454 467777777777777777777665
No 128
>PRK08618 ornithine cyclodeaminase; Validated
Probab=89.55 E-value=0.95 Score=46.28 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=32.5
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.++++||||||-- .+.| ++. +.+ ++|. .|+=|..|.-+-.|.
T Consensus 187 ~~~~~~aDiVi~aT~--s~~p-~i~-~~l---~~G~----hV~~iGs~~p~~~E~ 230 (325)
T PRK08618 187 DEAIEEADIIVTVTN--AKTP-VFS-EKL---KKGV----HINAVGSFMPDMQEL 230 (325)
T ss_pred HHHHhcCCEEEEccC--CCCc-chH-Hhc---CCCc----EEEecCCCCcccccC
Confidence 456789999999984 3456 555 655 9999 677787777777776
No 129
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.52 E-value=0.84 Score=46.76 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=33.1
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+|||||+.- .+.| +|..+.+ ++|. .|..+..|.-+.-|+
T Consensus 192 ~~al~~aDiVi~aT~--s~~p-~i~~~~l---~~g~----~v~~vg~d~~~~rEl 236 (330)
T PRK08291 192 HEAVAGADIIVTTTP--SEEP-ILKAEWL---HPGL----HVTAMGSDAEHKNEI 236 (330)
T ss_pred HHHHccCCEEEEeeC--CCCc-EecHHHc---CCCc----eEEeeCCCCCCcccC
Confidence 456778999999973 3445 6777766 7888 677787777777776
No 130
>PLN02712 arogenate dehydrogenase
Probab=89.49 E-value=0.77 Score=51.65 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+.+|.|||.|..|..-+..+++.|..|
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V 395 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTV 395 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEE
Confidence 457899999999999998888888888766
No 131
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.29 E-value=0.42 Score=47.72 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|.|+|.|..|..-+..+.+.|..|
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v 28 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSL 28 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeE
Confidence 36999999999998888888888876
No 132
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.25 E-value=1.8 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=23.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
.+|+|+|+|-+|+.++..+..+|+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~ 147 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFT 147 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCC
Confidence 5799999999999999999999984
No 133
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.90 E-value=0.39 Score=52.19 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|||||.+|+.|+..+.++|..|
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V 41 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDV 41 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCce
Confidence 5789999999999999999999999987
No 134
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.64 E-value=0.47 Score=47.36 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=22.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|||.|+.|..-...+.+.|..|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V 25 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQL 25 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeE
Confidence 5899999999999988888889877
No 135
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.49 E-value=3.3 Score=42.75 Aligned_cols=30 Identities=13% Similarity=-0.088 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+...+|.|||.|+.|..-+.-++..|..|
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~V 43 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDV 43 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEE
Confidence 345688999999999999989899988866
No 136
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=87.89 E-value=0.82 Score=45.46 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEEe
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTFV 231 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv 231 (452)
++...+|+|.|.|+||+.+.+.+..+|++||
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Gakvv 65 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVV 65 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 5567899999999999999999999999873
No 137
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.88 E-value=2.1 Score=43.76 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.7
Q ss_pred CceEEEEc-CcHHHHHHHHHHhcCCCE
Q 012946 204 PLVFVFTG-SGHASIAAQELFKLLPHT 229 (452)
Q Consensus 204 p~kv~V~G-~G~vg~gAi~~a~~LGa~ 229 (452)
--+|+|.| +|-||+-|++.|+.+|+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~ 169 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGAT 169 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCc
Confidence 36788888 699999999999999953
No 138
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=87.74 E-value=1.6 Score=45.56 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCCC--ceEEEEc-CcHHHHHHHHHHhcCCCEE
Q 012946 201 GICP--LVFVFTG-SGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p--~kv~V~G-~G~vg~gAi~~a~~LGa~v 230 (452)
+++| .+|+|+| .|..|..-...+.+-|..|
T Consensus 93 ~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V 125 (374)
T PRK11199 93 TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQV 125 (374)
T ss_pred ccCcccceEEEEcCCChhhHHHHHHHHHCCCeE
Confidence 4455 7899998 8999999999888866543
No 139
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=87.69 E-value=0.8 Score=39.72 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=28.2
Q ss_pred hhcCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecC
Q 012946 300 KIAPYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDM 347 (452)
Q Consensus 300 ~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~ 347 (452)
+.++.+|+++.| .|.-.+.+-...+ ++|. .|+|+|.|.
T Consensus 62 ~~~~~~Dvvf~a------~~~~~~~~~~~~~~~~g~----~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLA------LPHGASKELAPKLLKAGI----KVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE-------SCHHHHHHHHHHHHHTTS----EEEESSSTT
T ss_pred hHhhcCCEEEec------CchhHHHHHHHHHhhCCc----EEEeCCHHH
Confidence 345789999999 4555666666666 8888 999999886
No 140
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=86.98 E-value=2.8 Score=42.13 Aligned_cols=87 Identities=21% Similarity=0.159 Sum_probs=56.1
Q ss_pred cCCCcc--ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCce
Q 012946 129 NQGKRR--LIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLV 206 (452)
Q Consensus 129 ~~g~~~--L~s~~~~AG~~avi~al~~~g~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~k 206 (452)
++|.+. |-.|+.+-|..+.-. +.+.+... .+|| ++ +|..-++++++.+-++...-|+ ++..+.
T Consensus 105 ~~Ga~V~gLGgFssIVgn~~~n~-----q~~~~e~t-~~~~-tt------gns~Tayaa~r~Vl~~~~~lGi--dlsqat 169 (351)
T COG5322 105 KLGADVTGLGGFSSIVGNLGQNV-----QVRNVELT-FTRF-TT------GNSHTAYAACRQVLKHFAQLGI--DLSQAT 169 (351)
T ss_pred HcCCeEEeecchhhhhccccccc-----cccceEEE-EEec-cc------CCccchHHHHHHHHHHHHHhCc--CHHHCe
Confidence 467764 566777766544442 22222211 1221 11 2334567777777777777786 778999
Q ss_pred EEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
|.|.|+ |.+|.+-.+++..-+.+.
T Consensus 170 vaivGa~G~Ia~~Iar~la~~~~~~ 194 (351)
T COG5322 170 VAIVGATGDIASAIARWLAPKVGVK 194 (351)
T ss_pred EEEecCCchHHHHHHHHhccccCEE
Confidence 999999 999999988888777654
No 141
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.47 E-value=3.3 Score=37.54 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=22.2
Q ss_pred EEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|+ |.+|...++.|.+.|++|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V 25 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEV 25 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEE
T ss_pred eEEECCCChHHHHHHHHHHHCCCEE
Confidence 688896 999999999999999987
No 142
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.31 E-value=2 Score=44.00 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=23.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
...||+|||+|.+|.+....+...|. .+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i 33 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDV 33 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeE
Confidence 45799999999999999998887775 44
No 143
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=86.26 E-value=1.1 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.2
Q ss_pred EEEEcCcHHHHHHHHHHhcCCC
Q 012946 207 FVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa 228 (452)
|+|+|+|.+|..+++.+.+.+-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~ 22 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP 22 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC
T ss_pred CEEEcCcHHHHHHHHHHhcCCC
Confidence 6899999999999999999875
No 144
>PLN02256 arogenate dehydrogenase
Probab=86.20 E-value=2.4 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=23.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|.|+|.|..|..-+..+++.|..|
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V 62 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTV 62 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEE
Confidence 4678999999999998888888878655
No 145
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.60 E-value=0.76 Score=46.23 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|+|.|+.|..-...+.+.|..|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V 27 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQL 27 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeE
Confidence 6999999999999888888888866
No 146
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.10 E-value=1.8 Score=43.94 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCCCCceEEEEcCcH-HHHHHHHHHhcCCCEE----eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeeccccccc
Q 012946 200 SGICPLVFVFTGSGH-ASIAAQELFKLLPHTF----VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEP 274 (452)
Q Consensus 200 ~~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~v----v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~ 274 (452)
+++.-.+|+|+|+|. .|+.-+.-+.++|+++ ++.+-.++..+.. ...| ++ +.|.|.++..+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~--------~~~g-~~-~~y~cdis~~e---- 99 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEI--------RKIG-EA-KAYTCDISDRE---- 99 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHH--------HhcC-ce-eEEEecCCCHH----
Confidence 466778999999987 8888777777889955 3444444444320 0112 22 24555554221
Q ss_pred CCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcc-cCHHHHHH
Q 012946 275 KDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRL-LSTQQLRD 329 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~L-it~e~l~~ 329 (452)
|.++-- +. +.+-....|||||.|.+-...+.+ .++|.++.
T Consensus 100 ----------ei~~~a----~~-Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 100 ----------EIYRLA----KK-VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred ----------HHHHHH----HH-HHHhcCCceEEEeccccccCCCccCCCHHHHHH
Confidence 111110 11 245566889999999986433322 66777765
No 147
>PRK09414 glutamate dehydrogenase; Provisional
Probab=85.03 E-value=1.3 Score=47.46 Aligned_cols=47 Identities=23% Similarity=0.190 Sum_probs=36.2
Q ss_pred cCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 175 MYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-|+-...+.++++.. | .++...+|+|.|.|+||..+++.+..+|++|
T Consensus 212 g~Gv~~~~~~~~~~~-------~--~~l~g~rVaIqGfGnVG~~~A~~L~~~GakV 258 (445)
T PRK09414 212 GYGLVYFAEEMLKAR-------G--DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKV 258 (445)
T ss_pred cHHHHHHHHHHHHhc-------C--CCcCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 344455555555543 3 2567899999999999999999999999987
No 148
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.77 E-value=1 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.7
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|||.|+.|..-+.-+.+.|..|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v 26 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEV 26 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEE
Confidence 6899999999998888888888866
No 149
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=84.66 E-value=1.4 Score=47.35 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=37.3
Q ss_pred ccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEEe
Q 012946 174 YMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFV 231 (452)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv 231 (452)
--|+-.--+.++++.. | .++...+|+|-|.|+||..|++.+.++||+||
T Consensus 216 TG~Gv~~~~~~~l~~~-------~--~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVV 264 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKL-------N--DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVL 264 (454)
T ss_pred cHHHHHHHHHHHHHHc-------C--CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 3444455555555543 3 26678999999999999999999999999873
No 150
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.36 E-value=3.4 Score=41.85 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=24.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
+..+|+|+|+|-+|+.|++.|+.+|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~ 195 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAA 195 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 346799999999999999999999993
No 151
>PRK08655 prephenate dehydrogenase; Provisional
Probab=84.32 E-value=2.4 Score=45.20 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=22.4
Q ss_pred ceEEEEc-CcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTG-SGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G-~G~vg~gAi~~a~~LGa~v 230 (452)
++|.|+| .|..|...+..+...|..|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V 27 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEV 27 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEE
Confidence 3689997 7999999999999988866
No 152
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.21 E-value=1.5 Score=34.99 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=23.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.+|...+..+..+|.+|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~v 25 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEV 25 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEE
Confidence 6899999999999999999999876
No 153
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.12 E-value=1.4 Score=44.45 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=22.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|||.|+.|..-..-+.+-|..|
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V 26 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDC 26 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEE
Confidence 6999999999998888888888876
No 154
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.87 E-value=1.5 Score=39.83 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=23.7
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
||.|+|+|+.|......+...|.+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V 25 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEV 25 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEE
Confidence 7999999999999999999999987
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.76 E-value=6.2 Score=40.39 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=32.8
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+||||+|. +.+.|. +..+.+ |||. .|.=|..|.=+--|+
T Consensus 187 ~eav~~aDiVitaT--~s~~P~-~~~~~l---~~g~----~v~~vGs~~p~~~El 231 (325)
T TIGR02371 187 REAVEGCDILVTTT--PSRKPV-VKADWV---SEGT----HINAIGADAPGKQEL 231 (325)
T ss_pred HHHhccCCEEEEec--CCCCcE-ecHHHc---CCCC----EEEecCCCCcccccC
Confidence 56778999999976 455664 456655 9999 677777776666676
No 156
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.67 E-value=1.6 Score=44.01 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=22.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|||.|+.|..-..-+.+-|..|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v 26 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEV 26 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeE
Confidence 6999999999999888888889876
No 157
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.48 E-value=1.5 Score=37.04 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCC
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSR 235 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~ 235 (452)
+.-.+|+|+|+|.+|..-++.+...||.+ +.++.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35688999999999999999999999976 66654
No 158
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=82.46 E-value=2.3 Score=45.28 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+++|++|.|+|.|.+|+.....+.. |..|
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~~~V 31 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-SRQV 31 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-CCEE
Confidence 4478999999999999998887766 6766
No 159
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.38 E-value=3.2 Score=45.47 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+...+|+|+|+|-+|+.++..+..+|+.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V 405 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGARV 405 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEE
Confidence 45578999999999999999999999966
No 160
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=82.21 E-value=1.3 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=23.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|+|.|.+|+.....+...|..|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V 26 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEV 26 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeE
Confidence 6999999999999999998999977
No 161
>PLN00106 malate dehydrogenase
Probab=82.09 E-value=5.1 Score=41.21 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa 228 (452)
+.+|.||+|||+ |++|......+...|.
T Consensus 15 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~ 43 (323)
T PLN00106 15 GAPGFKVAVLGAAGGIGQPLSLLMKMNPL 43 (323)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 567899999999 9999999888875444
No 162
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=81.82 E-value=2.8 Score=42.81 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=23.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+.||.|||+|.+|...+..+...|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~ 30 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI 30 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence 35799999999999999998888887
No 163
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.35 E-value=1.8 Score=39.69 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.+|+.|+..+...|+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v 25 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKV 25 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeE
Confidence 5899999999999999999999977
No 164
>PRK06046 alanine dehydrogenase; Validated
Probab=81.19 E-value=6.2 Score=40.35 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=32.2
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+. +||||+|- |.+.| ++..+.+ |+|. .|.=|..|.-+-.|+
T Consensus 189 ~~~l~-aDiVv~aT--ps~~P-~~~~~~l---~~g~----hV~~iGs~~p~~~El 232 (326)
T PRK06046 189 EEACD-CDILVTTT--PSRKP-VVKAEWI---KEGT----HINAIGADAPGKQEL 232 (326)
T ss_pred HHHhh-CCEEEEec--CCCCc-EecHHHc---CCCC----EEEecCCCCCccccC
Confidence 34454 89999976 44566 5667765 8999 677788887777777
No 165
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.10 E-value=3 Score=40.34 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=24.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++++|+|+|+.|.+-...+-..|++|
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV 27 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEV 27 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeE
Confidence 67999999999999999999999988
No 166
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=80.47 E-value=4.4 Score=41.60 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=27.9
Q ss_pred CCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecC
Q 012946 303 PYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDM 347 (452)
Q Consensus 303 ~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~ 347 (452)
..+|+||.|. |.-++++-+... +.|. +|||+|.|.
T Consensus 62 ~~vDvVf~A~------g~g~s~~~~~~~~~~G~----~VIDlS~~~ 97 (334)
T PRK14874 62 SGVDIALFSA------GGSVSKKYAPKAAAAGA----VVIDNSSAF 97 (334)
T ss_pred cCCCEEEECC------ChHHHHHHHHHHHhCCC----EEEECCchh
Confidence 5789999874 556788877776 7787 999999886
No 167
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=80.33 E-value=7.4 Score=41.98 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=28.6
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 200 SGICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 200 ~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.++.-.+|+|-|.|++|+-|..-+.+.|+.|
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kv 277 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKV 277 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHHhcCCEE
Confidence 4677899999999999999999999999977
No 168
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=80.10 E-value=3.1 Score=39.78 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCC
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSR 235 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~ 235 (452)
.-.+|+|+|+|.+|...+..+...||.| ++|+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3468999999999999999999999976 67654
No 169
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=80.07 E-value=1.8 Score=46.43 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=26.2
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+.+|+|||+|.+|+.|+..|.+.|..+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v 36 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTV 36 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999866
No 170
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.00 E-value=1.5 Score=47.06 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=25.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|||||.+||.|+..+.+-|.++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v 32 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEV 32 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCc
Confidence 4788999999999999999999999966
No 171
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=79.48 E-value=2.9 Score=42.61 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=29.1
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+||||+|---.... +++..+.+ +||. .|.=|..+.-+-.|+
T Consensus 187 ~~av~~aDii~taT~s~~~~-P~~~~~~l---~~g~----hi~~iGs~~~~~~El 233 (313)
T PF02423_consen 187 EEAVRGADIIVTATPSTTPA-PVFDAEWL---KPGT----HINAIGSYTPGMREL 233 (313)
T ss_dssp HHHHTTSSEEEE----SSEE-ESB-GGGS----TT-----EEEE-S-SSTTBESB
T ss_pred hhhcccCCEEEEccCCCCCC-ccccHHHc---CCCc----EEEEecCCCCchhhc
Confidence 67789999999876544322 47777766 8998 788888887777887
No 172
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.40 E-value=1.3 Score=46.44 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+...+|+|+|+|-+|..++..+-+.|.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gv 65 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGV 65 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 5678999999999999999999999998
No 173
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=79.38 E-value=5.5 Score=40.23 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=21.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
||+|+|+|.+|...+..+...|.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~ 24 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI 24 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC
Confidence 79999999999999999988884
No 174
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.27 E-value=5 Score=40.30 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
.||.|+|+|.+|.+.+..+...|. ++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev 29 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDV 29 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE
Confidence 589999999999999998887764 55
No 175
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=79.04 E-value=11 Score=38.41 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCcccccc---cccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcC---cHHHHHHHHHHhcCCCEE--eCCCC
Q 012946 164 STPFLTLGA---AYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGS---GHASIAAQELFKLLPHTF--VDPSR 235 (452)
Q Consensus 164 ~~P~~~~~~---~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~---G~vg~gAi~~a~~LGa~v--v~~~~ 235 (452)
..|..+... .|.+--+.++....+.. | ++...||+++|- +++...-+..+..+|+++ +.|+.
T Consensus 123 ~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~-------G---~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~ 192 (305)
T PRK00856 123 DVPVINAGDGSHQHPTQALLDLLTIREEF-------G---RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPT 192 (305)
T ss_pred CCCEEECCCCCCCCcHHHHHHHHHHHHHh-------C---CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcc
Confidence 578888754 34444444444443322 2 467789999998 589999999999999977 66644
Q ss_pred h
Q 012946 236 L 236 (452)
Q Consensus 236 l 236 (452)
+
T Consensus 193 ~ 193 (305)
T PRK00856 193 L 193 (305)
T ss_pred c
Confidence 4
No 176
>PLN02712 arogenate dehydrogenase
Probab=78.97 E-value=3.4 Score=46.63 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=24.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++.+|.|||.|..|..-+..+++.|.+|
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V 78 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTV 78 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEE
Confidence 5789999999999998888888888766
No 177
>PRK06141 ornithine cyclodeaminase; Validated
Probab=78.83 E-value=8.7 Score=39.07 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=28.8
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+.++||||||---+ .| +++.+.+ +||. +|.=+..+.-+.-|+
T Consensus 184 ~~av~~aDIVi~aT~s~--~p-vl~~~~l---~~g~----~i~~ig~~~~~~~El 228 (314)
T PRK06141 184 EAAVRQADIISCATLST--EP-LVRGEWL---KPGT----HLDLVGNFTPDMREC 228 (314)
T ss_pred HHHHhcCCEEEEeeCCC--CC-EecHHHc---CCCC----EEEeeCCCCcccccC
Confidence 45678899998877643 45 6677655 8888 444344455555555
No 178
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.79 E-value=3.1 Score=41.85 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=21.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+|+|+|+|..|......+.+.|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~ 30 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL 30 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC
Confidence 579999999999988888888774
No 179
>PLN02268 probable polyamine oxidase
Probab=78.75 E-value=1.9 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=23.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+.|+..|++.|..|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v 26 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKV 26 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeE
Confidence 6899999999999999999989866
No 180
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=78.57 E-value=1.8 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=24.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+||+|||||.+|+.|+.-+..+|...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~ 47 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID 47 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce
Confidence 4569999999999999999888877754
No 181
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.33 E-value=3.9 Score=44.17 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=25.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|+|+|.|+.|+.|++.+++.|+.|
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v 38 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARP 38 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEE
Confidence 368999999999999999999999987
No 182
>PTZ00117 malate dehydrogenase; Provisional
Probab=78.16 E-value=6.4 Score=40.18 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=23.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
...||.|+|+|.+|.+....+...| +++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l 32 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDV 32 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeE
Confidence 4579999999999999998888877 444
No 183
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.07 E-value=3.2 Score=41.25 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=22.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|+|.|..|..-...+.+.|..|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V 26 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTV 26 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEE
Confidence 6999999999998888888888876
No 184
>PRK07236 hypothetical protein; Provisional
Probab=78.00 E-value=2.2 Score=44.01 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.+|+.+...|.+.|+.|
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v 32 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDV 32 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCE
Confidence 5789999999999999999999999976
No 185
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=77.95 E-value=2 Score=44.92 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=21.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
.+|+|+|+|.+|+.|+..|++.|
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G 23 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKG 23 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC
Confidence 36999999999999999999987
No 186
>PRK06753 hypothetical protein; Provisional
Probab=77.66 E-value=2.3 Score=43.45 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++|+|+|+|.+|+.++..+.+.|+.|
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v 26 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEV 26 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcE
Confidence 47999999999999999999999976
No 187
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.64 E-value=4 Score=40.71 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=19.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+|.|||.|+.|..-+.-+.+-|.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~ 26 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNI 26 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 479999999999987777766553
No 188
>PRK10262 thioredoxin reductase; Provisional
Probab=77.50 E-value=2.4 Score=42.59 Aligned_cols=30 Identities=17% Similarity=-0.012 Sum_probs=26.1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+-...+|+|||+|.+|+.|+..|.+.|..+
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~ 32 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQP 32 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCe
Confidence 336788999999999999999999988754
No 189
>PRK08163 salicylate hydroxylase; Provisional
Probab=77.00 E-value=2.5 Score=43.52 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|.+|+|+|+|.+|+.++-.+.+.|+.|
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v 30 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKV 30 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcE
Confidence 4688999999999999999999999976
No 190
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.89 E-value=2.3 Score=43.79 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=24.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
-.+|+|+|+|..|+.+..+|+.+||
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA 194 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGA 194 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC
Confidence 4889999999999999999999999
No 191
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=76.88 E-value=3.4 Score=41.57 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.5
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|||.|+.|..-+.-+.+-|..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v 26 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQL 26 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeE
Confidence 6999999999998888888878765
No 192
>PLN03075 nicotianamine synthase; Provisional
Probab=76.86 E-value=14 Score=37.54 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCC
Q 012946 154 LGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 154 ~g~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
++..++. ...|+-++.....|.|+..+-..=-+ .+.... ..+|.+|+.+|.|..++.|+-.+.++.
T Consensus 82 ~a~~i~~--~~~p~~~l~~Fpy~~nY~~L~~lE~~---~L~~~~---~~~p~~VldIGcGpgpltaiilaa~~~ 147 (296)
T PLN03075 82 FSTILGS--FDNPLDHLNLFPYYNNYLKLSKLEFD---LLSQHV---NGVPTKVAFVGSGPLPLTSIVLAKHHL 147 (296)
T ss_pred HHHHHhc--CCcHHHHhhcCCchHHHHHHHHHHHH---HHHHhh---cCCCCEEEEECCCCcHHHHHHHHHhcC
Confidence 4554444 23677777777788888877653222 222221 227999999999999999998887653
No 193
>PRK07233 hypothetical protein; Provisional
Probab=76.84 E-value=2.2 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=23.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+.|+..+.+.|..|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v 25 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEV 25 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcE
Confidence 5899999999999999999999865
No 194
>PRK06847 hypothetical protein; Provisional
Probab=76.78 E-value=2.5 Score=43.14 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=25.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+.+|+|+|+|.+|+.++..|.+.|+.|
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v 30 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAV 30 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCE
Confidence 578999999999999999999999966
No 195
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.09 E-value=4.1 Score=41.07 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|.|+|+|..|..-...+.+.|.+|
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V 30 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRV 30 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEE
Confidence 478999999999999999888877665
No 196
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=76.08 E-value=4.8 Score=36.84 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHH
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELF 240 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~ 240 (452)
.+.-.+|+|+|+|.+|.-=++.+..-|+.| ++|+..+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~ 51 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK 51 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH
Confidence 345688999999999999999998899976 7776556665
No 197
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=75.97 E-value=2.5 Score=41.28 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=23.3
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.+|+.|+..|.++|..|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v 26 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKT 26 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCE
Confidence 5899999999999999999999876
No 198
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.87 E-value=8.4 Score=39.05 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=32.4
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+.++||||||--- +.|.| .. . +|||. -|.=|..|.=+--|+
T Consensus 183 ~~av~~aDiVitaT~s--~~Pl~-~~-~---~~~g~----hi~~iGs~~p~~~El 226 (304)
T PRK07340 183 EAIPEAVDLVVTATTS--RTPVY-PE-A---ARAGR----LVVAVGAFTPDMAEL 226 (304)
T ss_pred HHHhhcCCEEEEccCC--CCcee-Cc-c---CCCCC----EEEecCCCCCCcccC
Confidence 4567899999998753 34654 43 3 48999 777788888788886
No 199
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.59 E-value=14 Score=34.81 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+..+|+|+|+|.+|+.+++.++.+|+.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v 161 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARV 161 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 3578999999889999999999999987
No 200
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=75.55 E-value=3 Score=41.24 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++..+.+.|+.|
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v 27 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDV 27 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEE
T ss_pred ceEEEECCCHHHHHHHHHHHhccccc
Confidence 46999999999999999999999976
No 201
>PRK06545 prephenate dehydrogenase; Validated
Probab=75.51 E-value=5.1 Score=41.51 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=22.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|+|.|..|..-+..+++.|..+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v 26 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDV 26 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCe
Confidence 6899999999999999999888644
No 202
>PLN02612 phytoene desaturase
Probab=75.10 E-value=5.7 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 198 LPSGICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 198 ~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|...+|.+|+|+|+|.+|+.|..-+.+.|..|
T Consensus 87 ~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~ 119 (567)
T PLN02612 87 APRPAKPLKVVIAGAGLAGLSTAKYLADAGHKP 119 (567)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeE
Confidence 456667899999999999999999999999876
No 203
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=74.84 E-value=2.6 Score=42.07 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.1
Q ss_pred EEcCcHHHHHHHHHHhcCCCEE
Q 012946 209 FTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 209 V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|||.|..|..-..-+.+.|..|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V 22 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPV 22 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeE
Confidence 5799999998888888888876
No 204
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=74.73 E-value=21 Score=36.28 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=43.1
Q ss_pred CCCcccccc---cccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCc---HHHHHHHHHHhcCCCEE--eCCCC
Q 012946 164 STPFLTLGA---AYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSG---HASIAAQELFKLLPHTF--VDPSR 235 (452)
Q Consensus 164 ~~P~~~~~~---~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G---~vg~gAi~~a~~LGa~v--v~~~~ 235 (452)
..|..+... .|.+--+.++....+.. | ++.-.+|+++|-| +|...-+..+..+|+.+ +.|+.
T Consensus 117 ~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~-------g---~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~ 186 (301)
T TIGR00670 117 EVPVINAGDGSNQHPTQTLLDLYTIYEEF-------G---RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEE 186 (301)
T ss_pred CCCEEeCCCCCCCCcHHHHHHHHHHHHHh-------C---CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCcc
Confidence 467777753 23343344444333322 2 4567899999995 99999999999999987 77776
Q ss_pred h
Q 012946 236 L 236 (452)
Q Consensus 236 l 236 (452)
+
T Consensus 187 ~ 187 (301)
T TIGR00670 187 L 187 (301)
T ss_pred c
Confidence 5
No 205
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=74.22 E-value=12 Score=35.99 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.0
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+...+.+.+.|+.|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V 32 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARV 32 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3467888888 779999999999999987
No 206
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=74.18 E-value=29 Score=35.46 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=23.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|.|||.|+-|..-+.-+...|..+
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~V 29 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNV 29 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeE
Confidence 367999999999999888888888754
No 207
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.16 E-value=10 Score=38.49 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=24.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|.|+|+|+.|..-...+.+-|..|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V 30 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPV 30 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeE
Confidence 468999999999999999988889877
No 208
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.01 E-value=4.5 Score=43.91 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+..|+|||+|.+|+.|+..|.++|..|
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v 238 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRT 238 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcE
Confidence 35788999999999999999999999976
No 209
>PRK12831 putative oxidoreductase; Provisional
Probab=74.00 E-value=4 Score=43.79 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=26.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|||+|.+|+.|+..+.++|+.|
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V 166 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDV 166 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeE
Confidence 4688999999999999999999999977
No 210
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=73.88 E-value=3.1 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=23.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|..|+..|.+.|..|
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~V 29 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDV 29 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeE
Confidence 34899999999999999999999876
No 211
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.82 E-value=9.3 Score=40.35 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+|.+|+.++..+...|+.|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V 31 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKV 31 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 3578999999999999999999999988
No 212
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.80 E-value=3.4 Score=46.25 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=25.5
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|+..|.++|+.|
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V 353 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAV 353 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeE
Confidence 579999999999999999999999977
No 213
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=73.58 E-value=3.4 Score=45.33 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=20.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|||+|.+|+.|+..+...|..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~ 27 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEV 27 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCC
Confidence 58999999999999999999999976
No 214
>PTZ00188 adrenodoxin reductase; Provisional
Probab=73.50 E-value=4.2 Score=44.28 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCceEEEEcCcHHHHHHHH-HHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQE-LFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~-~a~~LGa~v 230 (452)
.|.+|+|+|+|.+|+.|+. ++++.|+.|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~V 66 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKV 66 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeE
Confidence 6889999999999999977 566778876
No 215
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=73.41 E-value=7.7 Score=40.20 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=22.4
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCC
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPH 228 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa 228 (452)
..+.+|+|+|+ |.+|..-++.+..-++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 35788999988 9999999999987544
No 216
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=73.17 E-value=4.9 Score=38.46 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=22.2
Q ss_pred ceEEEEc-CcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTG-SGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G-~G~vg~gAi~~a~~LGa~v 230 (452)
++|.||| +|+.|..-...+.+.|.+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V 27 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKI 27 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEE
Confidence 3799997 8999998888888888876
No 217
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=72.98 E-value=26 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcC-cHHHHHHHHHHhcCCCEE--eCCCCh
Q 012946 164 STPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGS-GHASIAAQELFKLLPHTF--VDPSRL 236 (452)
Q Consensus 164 ~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v--v~~~~l 236 (452)
..|..+.+-.+.+++ +.+.+.+ .+-+ .-| ++...+|+++|. +++...-+..+..+|++| +.|+.+
T Consensus 120 ~vPVINag~~~~HPt-QaL~Dl~-Ti~e---~~g---~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~ 187 (304)
T PRK00779 120 TVPVINGLTDLSHPC-QILADLL-TIYE---HRG---SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGY 187 (304)
T ss_pred CCCEEeCCCCCCChH-HHHHHHH-HHHH---HhC---CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCccc
Confidence 468888765443433 3232221 1111 122 567899999999 889999999999999987 777665
No 218
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=72.88 E-value=7.3 Score=40.28 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=28.6
Q ss_pred hhcCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCC
Q 012946 300 KIAPYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDME 348 (452)
Q Consensus 300 ~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~g 348 (452)
++++.+|+++.|.-.. ++++.+..+ +.|. .|||+|.|.-
T Consensus 64 ~~~~~~DvVf~alP~~------~s~~~~~~~~~~G~----~VIDlS~~fR 103 (346)
T TIGR01850 64 EIAEDADVVFLALPHG------VSAELAPELLAAGV----KVIDLSADFR 103 (346)
T ss_pred HhhcCCCEEEECCCch------HHHHHHHHHHhCCC----EEEeCChhhh
Confidence 3445789999986433 667777776 6677 8999998854
No 219
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=72.79 E-value=3.7 Score=41.05 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=24.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|++.|+.+|+.+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~ 171 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSP 171 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCce
Confidence 356999999999999999999999963
No 220
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=72.46 E-value=14 Score=35.80 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCceEEEEcCcH-HHHHHHHHHhcCCCEE-eCCCCh
Q 012946 203 CPLVFVFTGSGH-ASIAAQELFKLLPHTF-VDPSRL 236 (452)
Q Consensus 203 ~p~kv~V~G~G~-vg~gAi~~a~~LGa~v-v~~~~l 236 (452)
...+.+|+|+|+ .|+.-...+-+-|+.+ |.+.+.
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~ 48 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDS 48 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecch
Confidence 457788999987 7888888888899988 444443
No 221
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=72.41 E-value=3.7 Score=43.40 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|+|+|.||..|+..+.++|+.|
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V 25 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKV 25 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--E
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCE
Confidence 4899999999999999999999988
No 222
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=72.31 E-value=4.4 Score=47.59 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=26.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.||+|+|+|.||+.|+..|.+.|+.|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~V 409 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNV 409 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeE
Confidence 5689999999999999999999999987
No 223
>PRK05717 oxidoreductase; Validated
Probab=72.29 E-value=5.6 Score=38.15 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=25.3
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+...+++|+|+ |..|...++.+.+.|+.|
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v 37 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQV 37 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEE
Confidence 344567999997 899999999999999987
No 224
>PLN02427 UDP-apiose/xylose synthase
Probab=72.24 E-value=12 Score=38.47 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcC-CCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLL-PHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~L-Ga~v 230 (452)
.+.|++|+|||+ |-+|..-++.|.+. |.+|
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V 42 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKV 42 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEE
Confidence 457899999997 99999999999887 4766
No 225
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=72.15 E-value=4.5 Score=39.87 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.-.+|+|-|.|+||..++..+.++|+++
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~v 58 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKV 58 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEE
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEE
Confidence 356799999999999999999999999977
No 226
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=72.14 E-value=2.3 Score=40.51 Aligned_cols=28 Identities=11% Similarity=0.002 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+...+|+|+|.|-+|...+..+-++|.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCC
Confidence 5578999999999999999999999998
No 227
>PRK06182 short chain dehydrogenase; Validated
Probab=71.87 E-value=13 Score=36.17 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.0
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+++|+|+ |-.|+..++.+.+.|+.|
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V 30 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTV 30 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 57899997 889999999999999987
No 228
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=71.84 E-value=9.6 Score=38.51 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=28.2
Q ss_pred HhhhcCCCcEEEeccccC-CCCCcccCHHHHHHh----hcCC
Q 012946 298 HEKIAPYASAIINCIYWE-KQFPRLLSTQQLRDL----AQKG 334 (452)
Q Consensus 298 ~~~~~~~~DIvIn~a~~~-~~~P~Lit~e~l~~m----k~gs 334 (452)
+.+.-...|+||.-..+| ++++.|+|++=.+.. +++.
T Consensus 143 v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 143 LRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred HHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 344444679999999999 688999999876543 6666
No 229
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=71.73 E-value=10 Score=39.89 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+||.|+|.|.+|+.....+. .|..|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~V 25 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEV 25 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcE
Confidence 37999999999999887776 49877
No 230
>PRK06823 ornithine cyclodeaminase; Validated
Probab=71.69 E-value=23 Score=36.20 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=33.5
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+|||++|- +.+.| +|..+.+ +||. -|.=|..+.-+-.|+
T Consensus 187 ~~av~~ADIV~taT--~s~~P-~~~~~~l---~~G~----hi~~iGs~~p~~~El 231 (315)
T PRK06823 187 AEVAHAANLIVTTT--PSREP-LLQAEDI---QPGT----HITAVGADSPGKQEL 231 (315)
T ss_pred HHHhcCCCEEEEec--CCCCc-eeCHHHc---CCCc----EEEecCCCCcccccC
Confidence 56788999999885 34556 5577766 8999 677677777777776
No 231
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=71.51 E-value=4.1 Score=44.72 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|+|+|+|.+|+.|+..|.++|+.|
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V 163 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAV 163 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeE
Confidence 468999999999999999999999976
No 232
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.41 E-value=4.4 Score=42.95 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=24.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+||+|+|.|.+|..|+..|.+.|+.|
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~~V 26 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGWEV 26 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEE
Confidence 47999999999999999999999987
No 233
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.17 E-value=13 Score=35.81 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=24.8
Q ss_pred CCCceEEEEcCc---HHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSG---HASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G---~vg~gAi~~a~~LGa~v 230 (452)
+...+++|+|++ -.|++..+.+.+.|+.|
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~V 36 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATV 36 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEE
Confidence 345789999996 69999999999999987
No 234
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=71.14 E-value=4.1 Score=42.37 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.3
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|||+|.+|+.|+-.|.+.|+.|
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V 25 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKV 25 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-E
T ss_pred EEEECCCHHHHHHHHHHhhhcCeE
Confidence 899999999999999999999987
No 235
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=71.10 E-value=14 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=27.2
Q ss_pred cCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCCC
Q 012946 302 APYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDMEG 349 (452)
Q Consensus 302 ~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~gG 349 (452)
.+.+|+++.|. |.-...+.+..+ +.|. .|||+|.|.--
T Consensus 66 ~~~vD~Vf~al------P~~~~~~~v~~a~~aG~----~VID~S~~fR~ 104 (343)
T PRK00436 66 LAGADVVFLAL------PHGVSMDLAPQLLEAGV----KVIDLSADFRL 104 (343)
T ss_pred hcCCCEEEECC------CcHHHHHHHHHHHhCCC----EEEECCcccCC
Confidence 35689998875 333556666666 6677 89999988643
No 236
>PRK09186 flagellin modification protein A; Provisional
Probab=71.10 E-value=15 Score=34.87 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.9
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+ |..|...+..+.+-|+.|
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v 31 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIV 31 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 57899998 789999999999999987
No 237
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=7.7 Score=37.53 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCc
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFD 282 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~ 282 (452)
+..+|+=||+|. |.+|+=+++--| .|++.++.+++.+.+ ++ .-..++-. .+. ....||..||.
T Consensus 72 ~g~~VLEIGtGs-GY~aAvla~l~~-~V~siEr~~~L~~~A---~~-~L~~lg~~-----nV~------v~~gDG~~G~~ 134 (209)
T COG2518 72 PGDRVLEIGTGS-GYQAAVLARLVG-RVVSIERIEELAEQA---RR-NLETLGYE-----NVT------VRHGDGSKGWP 134 (209)
T ss_pred CCCeEEEECCCc-hHHHHHHHHHhC-eEEEEEEcHHHHHHH---HH-HHHHcCCC-----ceE------EEECCcccCCC
Confidence 568999999994 676666665555 776666555554321 00 00011211 011 12345655554
Q ss_pred ccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCC
Q 012946 283 KNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKG 334 (452)
Q Consensus 283 ~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs 334 (452)
. ..|+ |.|+-++..+.-.+.| ++++|+|.
T Consensus 135 ~-----------------~aPy-D~I~Vtaaa~~vP~~L-----l~QL~~gG 163 (209)
T COG2518 135 E-----------------EAPY-DRIIVTAAAPEVPEAL-----LDQLKPGG 163 (209)
T ss_pred C-----------------CCCc-CEEEEeeccCCCCHHH-----HHhcccCC
Confidence 3 3555 8888888877633333 45678886
No 238
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=70.79 E-value=4.8 Score=31.48 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred EEcCcHHHHHHHHHHhcCCCEE
Q 012946 209 FTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 209 V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|.+|+.|...+.+.|.+|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v 22 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRV 22 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcE
Confidence 7999999999999999998876
No 239
>PLN02852 ferredoxin-NADP+ reductase
Probab=70.72 E-value=4.9 Score=43.67 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhc--CCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKL--LPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~--LGa~v 230 (452)
.+.+|+|+|+|.+|+.|+..|.+ .|+.|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~V 54 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARV 54 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeE
Confidence 57899999999999999999975 68876
No 240
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.47 E-value=6.2 Score=42.83 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+..|+|||+|.+|+.|+..+.++|..+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v 237 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRT 237 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcE
Confidence 4678999999999999999999999976
No 241
>PRK05884 short chain dehydrogenase; Provisional
Probab=70.42 E-value=8.1 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred eEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+++|+|+ |..|+..++.+.+.|+.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v 27 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKV 27 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEE
Confidence 6888887 889999999999999987
No 242
>PLN02576 protoporphyrinogen oxidase
Probab=70.40 E-value=3.8 Score=43.73 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcC-CCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLL-PHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~L-Ga~v 230 (452)
+..+|+|||+|.+|+.|...+.+. |..|
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v 39 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNV 39 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCE
Confidence 356899999999999999999988 7765
No 243
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=70.21 E-value=5.2 Score=42.88 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=25.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|+..+.+.|..|
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V 169 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKV 169 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcE
Confidence 468999999999999999999999976
No 244
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=70.15 E-value=12 Score=37.89 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=23.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|.|+|+|.+|..-...+.+-|..|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V 28 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADV 28 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcE
Confidence 47999999999999999898889977
No 245
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=69.97 E-value=4.6 Score=46.51 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.7
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+..+.+|+|+|+|.+|+.|+..+.+.|..|
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v 264 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKV 264 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcE
Confidence 345688999999999999999999999976
No 246
>PTZ00325 malate dehydrogenase; Provisional
Probab=69.89 E-value=28 Score=35.80 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCC
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLP 227 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LG 227 (452)
.-.||+|||+ |.+|......+...|
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCC
Confidence 3469999999 999999888777444
No 247
>PRK08267 short chain dehydrogenase; Provisional
Probab=69.83 E-value=14 Score=35.35 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.2
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+++|+|+ |-.|+..+..+.+.|+.|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V 28 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRV 28 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 35888887 889999999899999987
No 248
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=69.77 E-value=5.3 Score=42.55 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.+|+.|+..+.+.|..|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V 159 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSV 159 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcE
Confidence 4578999999999999999999999976
No 249
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=69.66 E-value=5.5 Score=40.48 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=24.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|++.|+.+|+.|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~v 199 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEV 199 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 467999999999999999999999976
No 250
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=69.46 E-value=30 Score=37.88 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=56.3
Q ss_pred cEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeec--------------CCCCeeeecccccCCCCEEE----e
Q 012946 306 SAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCD--------------MEGSIEILNQTTTIDSPFFR----Y 367 (452)
Q Consensus 306 DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D--------------~gG~iE~~~~~Tt~~~P~~~----~ 367 (452)
+|||.+..+++ ++|+|-++.|..-+-|= +|.-+|-- .+|++=|-+ .++=.|+-. |
T Consensus 391 tvLiG~S~~~g----~Fteevl~~Ma~~~erP-iIFalSNPT~~aECtae~ay~~t~Gr~ifaS--GSPF~pV~~~gK~~ 463 (582)
T KOG1257|consen 391 TVLIGASGVGG----AFTEEVLRAMAKSNERP-IIFALSNPTSKAECTAEQAYKWTKGRAIFAS--GSPFPPVEYNGKVY 463 (582)
T ss_pred cEEEecccCCc----cCCHHHHHHHHhcCCCc-eEEecCCCccccccCHHHHhhhcCCcEEEec--CCCCCCceeCCcEe
Confidence 89999887765 77999999994332222 45556633 245554421 122233221 1
Q ss_pred CCCCCCCC--CCCCCCCeEEEeeCCcCCcchHHHHHHHHHHHHH
Q 012946 368 DPKNDSYH--HDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQ 409 (452)
Q Consensus 368 ~~~~~~~~--~~~~~~gV~~~~vdnLPs~lp~~AS~~fs~~l~~ 409 (452)
.|.+.-.. -+--+=|+...+..++|-+|=.-||+.+++.+.+
T Consensus 464 ~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~ 507 (582)
T KOG1257|consen 464 VPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAEQVSE 507 (582)
T ss_pred cccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHHhhCCH
Confidence 11110000 0011235677888999999999999999988654
No 251
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.36 E-value=8.2 Score=36.79 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.7
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHH
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELF 240 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~ 240 (452)
+.-.+|+|+|+|.+|.-.+..+...|+.| ++++.-+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~ 48 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLV 48 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHH
Confidence 45579999999999999999999999966 6665434443
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=69.27 E-value=5.2 Score=45.67 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.+|+.|...+.+.|..|
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v 186 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKV 186 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcE
Confidence 5678999999999999999999999976
No 253
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.23 E-value=4.9 Score=41.61 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+..|+|+|+|.+|+.++-.|.+.|..|
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v 44 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRI 44 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEE
Confidence 567999999999999999999999976
No 254
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=69.21 E-value=6.6 Score=41.59 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=24.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|.|+|.|.+|......+...|..|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V 29 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQV 29 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEE
Confidence 67999999999999999999999987
No 255
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.07 E-value=4.6 Score=37.18 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=17.8
Q ss_pred EEEcCcHHHHHHHHHHhcCCCE-E
Q 012946 208 VFTGSGHASIAAQELFKLLPHT-F 230 (452)
Q Consensus 208 ~V~G~G~vg~gAi~~a~~LGa~-v 230 (452)
+|||+|.+|+.|+..|++.|.. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v 24 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPV 24 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---E
T ss_pred CEECcCHHHHHHHHHHHhCCCCcE
Confidence 6999999999999999999996 5
No 256
>PRK05693 short chain dehydrogenase; Provisional
Probab=68.98 E-value=14 Score=35.78 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.1
Q ss_pred eEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+++|+|+ |-.|...++.+.+.|+.|
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V 28 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEV 28 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEE
Confidence 6888887 889999999999999987
No 257
>CHL00194 ycf39 Ycf39; Provisional
Probab=68.80 E-value=13 Score=37.24 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=23.2
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
++|+|+|+ |.+|...++.+.+.|.+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V 27 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQV 27 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeE
Confidence 37899996 999999999999999987
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.76 E-value=4.8 Score=42.62 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=24.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcC--CCEE--eCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLL--PHTF--VDPS 234 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~L--Ga~v--v~~~ 234 (452)
.+|+|+|+|.+|..|+..++++ +++| ++++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 3799999999999999999887 4544 5443
No 259
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=68.74 E-value=19 Score=36.48 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=33.2
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+|||+++-- .+.| +|..+.+ +||. -|.=|..+.=+-.|+
T Consensus 177 ~eav~~aDIV~taT~--s~~P-~~~~~~l---~pg~----hV~aiGs~~p~~~El 221 (301)
T PRK06407 177 EAALRDADTITSITN--SDTP-IFNRKYL---GDEY----HVNLAGSNYPNRREA 221 (301)
T ss_pred HHHHhcCCEEEEecC--CCCc-EecHHHc---CCCc----eEEecCCCCCCcccC
Confidence 567889999998654 3455 5577766 7898 577677777777777
No 260
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=68.71 E-value=5.4 Score=41.11 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=23.1
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
+|+|+|+|.+|+-|+.+++.+||.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~ 194 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGAS 194 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc
Confidence 899999999999999999999993
No 261
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=68.54 E-value=11 Score=38.89 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCc--HHHHHHHHHHhcCCCEE--eCCCCh
Q 012946 201 GICPLVFVFTGSG--HASIAAQELFKLLPHTF--VDPSRL 236 (452)
Q Consensus 201 ~i~p~kv~V~G~G--~vg~gAi~~a~~LGa~v--v~~~~l 236 (452)
++...+|+++|-+ +|+..-+..+..+|+++ +.|+.+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccc
Confidence 5677999999985 89999899999999987 777654
No 262
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=68.50 E-value=39 Score=35.68 Aligned_cols=126 Identities=9% Similarity=0.041 Sum_probs=73.1
Q ss_pred CceEEEecccCCCCCCHHHHHHHHHcCCeEEE------eecccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 012946 91 RAYAFFSHTHKAQPENMALLDKILAQRVSLFD------YELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYS 164 (452)
Q Consensus 91 ~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~------~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~~~~ 164 (452)
+.-.++|+..++. ..++-+-|-+-|++.+. ++.++...+...+...+.++++. +++|.+.++
T Consensus 154 ~~vniiG~~~~~d--~~elk~lL~~~Gi~v~~~lpd~~~~e~~~~~~~~~~~~~~~~~~~~----------A~~Le~~~G 221 (407)
T TIGR01279 154 RALVLVGSVNDIV--ADQLRLELKQLGIPVVGFLPASHFTELPVIGPGTVVAPLQPYLSDT----------ATTLRRERG 221 (407)
T ss_pred CcEEEEeccChhh--HHHHHHHHHHcCCeEEEEeCCCCcchhhhcCCCeEEEEechHHHHH----------HHHHHHHhC
Confidence 4557888876442 24555555567777762 12222221111245555555532 234554567
Q ss_pred CCcccccccccCccHHHHHHHHHHh-h--------------HHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 165 TPFLTLGAAYMYPSLAAAKAAIISV-G--------------EEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 165 ~P~~~~~~~~~~~~~~~~~~~~~~~-g--------------~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
.|++..+.++......+++++|.++ | ..+... ...+.-.+|+|.|.+.-..+-...+..||.+
T Consensus 222 iP~~~~~~PiGi~~T~~~l~~la~~~g~~~~~~~~e~~~~~~~l~~~--~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~ 299 (407)
T TIGR01279 222 AKVLSAPFPFGPDGTRRFLEAIAAEFGIEVDKLSEREAQAWRALEPH--TQLLRGKKIFFFGDNLLELPLARFLKRCGME 299 (407)
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH--HHhcCCCEEEEECCchHHHHHHHHHHHCCCE
Confidence 8887776555555555555555442 1 111111 1235668899999999889999999999998
Q ss_pred E
Q 012946 230 F 230 (452)
Q Consensus 230 v 230 (452)
+
T Consensus 300 ~ 300 (407)
T TIGR01279 300 V 300 (407)
T ss_pred E
Confidence 7
No 263
>PLN02858 fructose-bisphosphate aldolase
Probab=68.38 E-value=5.8 Score=48.41 Aligned_cols=90 Identities=12% Similarity=0.032 Sum_probs=56.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE-eCC---CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF-VDP---SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~---~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
..+|.|||.|+.|..-+.-+...|..+ +.. .+.+.+.+. +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~------------Ga~---------------------- 369 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA------------GGL---------------------- 369 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc------------CCe----------------------
Confidence 478999999999999888888888866 222 222333310 110
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCccc-C-HHHHHHhhcCCCCeEEEEEeee
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLL-S-TQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Li-t-~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
...+| .+.+..+|+||.|.-=+....-++ . ...+..|++|. +|||.|.
T Consensus 370 ------~~~s~--------~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~----ivVd~ST 419 (1378)
T PLN02858 370 ------AGNSP--------AEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGA----SIVLSST 419 (1378)
T ss_pred ------ecCCH--------HHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCC----EEEECCC
Confidence 00011 456778999999877554222222 2 33456678888 9999876
No 264
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=68.37 E-value=23 Score=36.29 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=28.7
Q ss_pred hcCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCC
Q 012946 301 IAPYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDME 348 (452)
Q Consensus 301 ~~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~g 348 (452)
..+.+|+++-|. |.=++.+-+..+ +.|. .|||+|+|.-
T Consensus 47 ~~~~~DvvFlal------p~~~s~~~~~~~~~~g~----~VIDlSadfR 85 (313)
T PRK11863 47 LLNAADVAILCL------PDDAAREAVALIDNPAT----RVIDASTAHR 85 (313)
T ss_pred hhcCCCEEEECC------CHHHHHHHHHHHHhCCC----EEEECChhhh
Confidence 345789999876 555777777776 6677 8999999863
No 265
>PRK07904 short chain dehydrogenase; Provisional
Probab=68.36 E-value=25 Score=34.00 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCC-CEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LG-a~v 230 (452)
.+.+|+|+|+ |-.|+..++-+.+.| +.|
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V 36 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARV 36 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeE
Confidence 4678999998 779998888776664 776
No 266
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=68.26 E-value=5.7 Score=42.64 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+|.+|+.|+..|.++|+.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V 167 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQV 167 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 3578999999999999999999999977
No 267
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.06 E-value=14 Score=35.92 Aligned_cols=28 Identities=7% Similarity=0.021 Sum_probs=23.9
Q ss_pred CCceEEEEcCc---HHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSG---HASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G---~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|++ -.|+.....+.+.|+.|
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v 36 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKL 36 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Confidence 45789999984 79999999999999987
No 268
>PLN02253 xanthoxin dehydrogenase
Probab=68.06 E-value=18 Score=35.15 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=24.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+...+++|+|+ |-.|...+..+.+.|+.|
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v 45 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKV 45 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 344567999998 779999888888899987
No 269
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=67.96 E-value=5 Score=41.69 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=24.6
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+.+|+|+|+|.+|+.+.-.+.+.|..|
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v 28 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDN 28 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCE
Confidence 467999999999999999999999976
No 270
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=67.88 E-value=5.1 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=25.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|||+|.+|+.|+..|.+.|+.|
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~V 563 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPV 563 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeE
Confidence 368999999999999999999999976
No 271
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.74 E-value=21 Score=36.15 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.||.|+|+|.+|...+..+...|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~ 24 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL 24 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC
Confidence 379999999999999999888884
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=67.34 E-value=6.5 Score=41.82 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.+|+.|+..+.+.|..|
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V 166 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDV 166 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeE
Confidence 4689999999999999999999999977
No 273
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=67.12 E-value=5.3 Score=41.65 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
.+|+|+|+|.+|+.++..+++.| +.|
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v 27 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNV 27 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCE
Confidence 47999999999999999999988 444
No 274
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=67.07 E-value=15 Score=35.07 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=24.1
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+..+..+.+.|+.|
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~v 36 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEI 36 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEE
Confidence 4567999997 779999999999999987
No 275
>PRK07538 hypothetical protein; Provisional
Probab=67.04 E-value=5.3 Score=41.66 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=23.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++|+|+|+|.+|+.+...+.+.|..|
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v 26 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEV 26 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcE
Confidence 36999999999999999999999966
No 276
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=67.01 E-value=7.8 Score=37.73 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CceEEEEcCcH-HHHHHHHHHhcCCCEE-eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCC
Q 012946 204 PLVFVFTGSGH-ASIAAQELFKLLPHTF-VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAF 281 (452)
Q Consensus 204 p~kv~V~G~G~-vg~gAi~~a~~LGa~v-v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~ 281 (452)
--.|+|+|+|. .|++-..-+.++|-+| +.-++-+.+.|. .+..+.+++.+.+..|...
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~------------~~~~p~~~t~v~Dv~d~~~-------- 64 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEA------------KAENPEIHTEVCDVADRDS-------- 64 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHH------------HhcCcchheeeecccchhh--------
Confidence 35799999876 8999999999999988 444433333321 0111234444444322110
Q ss_pred cccccccCcCCcCcchHhhhcCCCcEEEeccccCC-----C-----------------CCcccCHHHHHHh--hcCCCCe
Q 012946 282 DKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEK-----Q-----------------FPRLLSTQQLRDL--AQKGCPL 337 (452)
Q Consensus 282 ~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~-----~-----------------~P~Lit~e~l~~m--k~gs~~l 337 (452)
++++ -.++.+-.|..+||||+|-+-. . +|.-+|..++.-+ +|.+
T Consensus 65 -~~~l--------vewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a--- 132 (245)
T COG3967 65 -RREL--------VEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEA--- 132 (245)
T ss_pred -HHHH--------HHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---
Confidence 1111 1223455678899999997741 1 2333445555555 4566
Q ss_pred EEEEEeeecC
Q 012946 338 VGISDLTCDM 347 (452)
Q Consensus 338 ~vIvDvs~D~ 347 (452)
.||-||..-
T Consensus 133 -~IInVSSGL 141 (245)
T COG3967 133 -TIINVSSGL 141 (245)
T ss_pred -eEEEecccc
Confidence 899998643
No 277
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=66.98 E-value=6.6 Score=44.73 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=25.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|||+|.+|+.|+..+.+.|..|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V 457 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDV 457 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeE
Confidence 4568999999999999999999999977
No 278
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.97 E-value=29 Score=35.10 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCE---EeC-CCChhhH
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHT---FVD-PSRLPEL 239 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~---vv~-~~~l~~~ 239 (452)
+...+|+|+|+ --.|..-+.-+-+.|+. +++ .++++++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v 52 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERV 52 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHH
Confidence 45789999999 34666666667778994 343 4556655
No 279
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=66.94 E-value=16 Score=38.07 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.1
Q ss_pred cCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCC
Q 012946 302 APYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDME 348 (452)
Q Consensus 302 ~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~g 348 (452)
...+|+++.| .|.=++.+-+..+ .+|. .|||+|+|.-
T Consensus 68 ~~~~DvvFla------lPhg~s~~~v~~l~~~g~----~VIDLSadfR 105 (349)
T COG0002 68 LDECDVVFLA------LPHGVSAELVPELLEAGC----KVIDLSADFR 105 (349)
T ss_pred cccCCEEEEe------cCchhHHHHHHHHHhCCC----eEEECCcccc
Confidence 4568999988 4666778888777 4566 6999999953
No 280
>PRK08265 short chain dehydrogenase; Provisional
Probab=66.94 E-value=13 Score=35.89 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.0
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+...+.+.+.|+.|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V 33 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARV 33 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3468899997 889999999999999987
No 281
>PRK07208 hypothetical protein; Provisional
Probab=66.91 E-value=5.3 Score=42.44 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=24.3
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+.+|+|+|+|.+|+.|+..+.+.|..|
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v 30 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPV 30 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcE
Confidence 567999999999999999999988865
No 282
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=66.51 E-value=12 Score=35.15 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=24.1
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |..|+..++.+.+.|+.|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v 33 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGAIV 33 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3468999996 899999999999999977
No 283
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=66.51 E-value=14 Score=37.93 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.||+|||+|.+|...+..+...+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~ 24 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL 24 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc
Confidence 489999999999988887755544
No 284
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=66.48 E-value=11 Score=38.01 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 207 FVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
|.|+|+|.+|.+....+...|. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV 25 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDV 25 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEE
Confidence 5799999999999988876554 65
No 285
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=66.47 E-value=11 Score=36.29 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred CccHHHHHHHHHH-hhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 176 YPSLAAAKAAIIS-VGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 176 ~~~~~~~~~~~~~-~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
++|.+++.+.+-. .|...+. .+...+|+|+|+|-+|...+..+-++|..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~q~-----~L~~~~V~ViG~GglGs~ia~~La~~Gvg 53 (212)
T PRK08644 4 IPSMEEFEAMLASRHTPKLLE-----KLKKAKVGIAGAGGLGSNIAVALARSGVG 53 (212)
T ss_pred cCcHHHHHHHHHhhcCHHHHH-----HHhCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence 4455555554442 3433322 56789999999999999999999999994
No 286
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.43 E-value=5.9 Score=44.29 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=25.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|+..|.++|+.|
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~V 336 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQV 336 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcE
Confidence 488999999999999999999999976
No 287
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=66.42 E-value=5.7 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=24.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|..|...+.+.|..|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V 26 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQT 26 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcE
Confidence 36999999999999999999999977
No 288
>PRK06949 short chain dehydrogenase; Provisional
Probab=66.28 E-value=11 Score=36.01 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.8
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+ |-+|...+..+.+.|+.|
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~~V 36 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGAKV 36 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEE
Confidence 4578999997 999999999999999977
No 289
>PLN02858 fructose-bisphosphate aldolase
Probab=66.28 E-value=7.6 Score=47.45 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=56.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE-eCC---CChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF-VDP---SRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~---~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
..+|.+||.|+.|..-..-+.+.|..| +.. +..+++.+. |..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~------------Ga~---------------------- 49 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCEL------------GGH---------------------- 49 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc------------CCe----------------------
Confidence 467999999999999888888889976 332 223344311 111
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCC-CcccC-HHHHHHhhcCCCCeEEEEEeee
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQF-PRLLS-TQQLRDLAQKGCPLVGISDLTC 345 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~-P~Lit-~e~l~~mk~gs~~l~vIvDvs~ 345 (452)
....| .+.+..+|+||.|.-=+... -.++. ...+..+++|. +|||.|.
T Consensus 50 ------~~~s~--------~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~----iivd~ST 99 (1378)
T PLN02858 50 ------RCDSP--------AEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGA----VILIRST 99 (1378)
T ss_pred ------ecCCH--------HHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcC----EEEECCC
Confidence 00122 55677899999987444311 12222 33455678898 9999884
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.21 E-value=5.2 Score=41.61 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=23.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
+.+|+|+|+|.+|..|+..+.+.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~ 27 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGF 27 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCC
Confidence 4679999999999999999999886
No 291
>PRK06116 glutathione reductase; Validated
Probab=66.16 E-value=6.4 Score=41.64 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=25.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE--eCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF--VDP 233 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v--v~~ 233 (452)
-|+|||+|.+|+.|+..|.++|..| +..
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4999999999999999999999987 554
No 292
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.86 E-value=16 Score=37.31 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
||.|+|+|.+|...+..+-..|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~ 23 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL 23 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC
Confidence 68999999999998777766555
No 293
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=65.79 E-value=5.9 Score=46.72 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=25.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|||+|.+|+.|+..|.+.|+.|
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~V 565 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPV 565 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999976
No 294
>PRK07588 hypothetical protein; Provisional
Probab=65.79 E-value=5.8 Score=40.89 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|+.+...+.+.|..|
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v 26 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEP 26 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCce
Confidence 37999999999999999999999976
No 295
>PRK07825 short chain dehydrogenase; Provisional
Probab=65.77 E-value=19 Score=34.83 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.8
Q ss_pred CceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
..+++|+|+ |-.|...+.-+.+.|+.|
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v 32 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARV 32 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 467899998 789999888888889987
No 296
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=65.76 E-value=5.5 Score=42.65 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=23.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.||..|+..+.+.|..|
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V 26 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPV 26 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcE
Confidence 6999999999999999999999977
No 297
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=65.74 E-value=29 Score=40.93 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=20.5
Q ss_pred CCCCceEEEEc--CcHHHHHHHHHHh
Q 012946 201 GICPLVFVFTG--SGHASIAAQELFK 224 (452)
Q Consensus 201 ~i~p~kv~V~G--~G~vg~gAi~~a~ 224 (452)
+..+.+|+++| .|.||..++...+
T Consensus 660 d~~~~Tv~~~Ggp~GDVGgN~~lls~ 685 (1002)
T PTZ00324 660 NEEEVTKFQTGGPDGDLGSNELLLSK 685 (1002)
T ss_pred CccCCEEEEECCCCchHHHHHHHHhC
Confidence 34578999999 8999999999876
No 298
>PRK07109 short chain dehydrogenase; Provisional
Probab=65.67 E-value=19 Score=36.72 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+|+|+|+ |-.|+..++.+.+.|+.|
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~V 35 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKV 35 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Confidence 34568999998 889999999999999987
No 299
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.46 E-value=5.9 Score=46.50 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|||+|.||+.|+..|.+.|+.|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~V 332 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPV 332 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeE
Confidence 3589999999999999999999999976
No 300
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=65.44 E-value=5.4 Score=42.13 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+.|...+.+.|..|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v 25 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTP 25 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcE
Confidence 5899999999999999999999866
No 301
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=65.37 E-value=7.4 Score=39.62 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=25.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|||+|.+|+.++.-|.+.|..|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V 30 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADV 30 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEE
Confidence 3578999999999999999999999866
No 302
>PRK06475 salicylate hydroxylase; Provisional
Probab=65.05 E-value=5.8 Score=41.20 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|+.+...+.+.|..|
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V 28 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAV 28 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcE
Confidence 57999999999999999999999976
No 303
>PRK07045 putative monooxygenase; Reviewed
Probab=65.04 E-value=6.5 Score=40.48 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.8
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.+.-.+.+.|..|
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v 31 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSV 31 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcE
Confidence 467999999999999999999999976
No 304
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=64.91 E-value=6.3 Score=44.51 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=26.9
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-++.+|+|+|+|.+|+.++..|++.|+.|
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V 107 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDV 107 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeE
Confidence 36899999999999999999999999977
No 305
>PRK12831 putative oxidoreductase; Provisional
Probab=64.81 E-value=7 Score=41.94 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|++|.-++.++.++|+.|
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~V 307 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEV 307 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999977
No 306
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=64.67 E-value=7.1 Score=39.94 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.+|+.|+..+.+.|..+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v 44 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEV 44 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcE
Confidence 4689999999999999999999999866
No 307
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.56 E-value=6.9 Score=42.02 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=24.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|.|+.|.+|++.+.+.|+.|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v 34 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQ 34 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEE
Confidence 57999999999999999999999987
No 308
>PRK07589 ornithine cyclodeaminase; Validated
Probab=64.51 E-value=26 Score=36.38 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=32.5
Q ss_pred hhhcCCCcEEEeccccCCCC-CcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQF-PRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~-P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+|||++|-- .+. ..+|..+.+ |||. -|.=|..+.-+--|+
T Consensus 188 ~~av~~ADIIvtaT~--S~~~~Pvl~~~~l---kpG~----hV~aIGs~~p~~~El 234 (346)
T PRK07589 188 AEAVEGADIITTVTA--DKTNATILTDDMV---EPGM----HINAVGGDCPGKTEL 234 (346)
T ss_pred HHHHhcCCEEEEecC--CCCCCceecHHHc---CCCc----EEEecCCCCCCcccC
Confidence 667889999999873 333 246777766 8998 566666666666666
No 309
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=64.48 E-value=13 Score=36.38 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHH
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELF 240 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~ 240 (452)
.-.+|+|+|+|.||.-=+..+..-||.| |.|+--+++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~ 63 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL 63 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH
Confidence 4678999999999999999999999976 7776544443
No 310
>PRK06484 short chain dehydrogenase; Validated
Probab=64.45 E-value=23 Score=37.87 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ +-.|++.++.+.+.|+.|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V 32 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQV 32 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEE
Confidence 3467899998 559999999999999987
No 311
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.39 E-value=8.5 Score=41.14 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
....+|+|+|+|.+|+.++..+.+.|+.|
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V 42 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARV 42 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 45678999999999999999999999987
No 312
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=64.31 E-value=7.3 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+.++.-+.+.|..|
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V 26 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEV 26 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEE
Confidence 7999999999999888888889977
No 313
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.24 E-value=7 Score=41.46 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=24.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.|+|||+|.+|+.|+..|.++|..|
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V 30 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKV 30 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcE
Confidence 46999999999999999999999987
No 314
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=64.22 E-value=9.5 Score=37.62 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++.+++|+|+|.+++.-..+|+.||..|
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V 126 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRV 126 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEE
Confidence 5689999999999999999999999987
No 315
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=64.22 E-value=6.7 Score=41.73 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=23.9
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|..|...|.++|.+|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V 26 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNV 26 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcE
Confidence 7999999999999999999999987
No 316
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=64.18 E-value=7.5 Score=37.69 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=24.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++|+|+|+|++|..-++.+.+.|..|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~V 26 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNV 26 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCce
Confidence 47999999999999999999999977
No 317
>PLN02342 ornithine carbamoyltransferase
Probab=64.16 E-value=18 Score=37.73 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=41.7
Q ss_pred CCCcccccccccCcc--HHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcC-cHHHHHHHHHHhcCCCEE--eCCCCh
Q 012946 164 STPFLTLGAAYMYPS--LAAAKAAIISVGEEIATEGLPSGICPLVFVFTGS-GHASIAAQELFKLLPHTF--VDPSRL 236 (452)
Q Consensus 164 ~~P~~~~~~~~~~~~--~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v--v~~~~l 236 (452)
..|..+-...+.+++ +.++....+. -| ++.-.||+++|- -+|...-+..+..+|+++ +.|+.+
T Consensus 162 ~vPVINA~~~~~HPtQaLaDl~Ti~e~-------~G---~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~ 229 (348)
T PLN02342 162 SVPVINGLTDYNHPCQIMADALTIIEH-------IG---RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGY 229 (348)
T ss_pred CCCEEECCCCCCChHHHHHHHHHHHHH-------hC---CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCccc
Confidence 568887654443333 2233332222 22 456789999998 458888899999999987 778765
No 318
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=64.07 E-value=7.5 Score=41.14 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=23.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.|+..|.+.|..|
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v 27 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKV 27 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999987
No 319
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=63.88 E-value=16 Score=38.34 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred cCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCC
Q 012946 302 APYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDME 348 (452)
Q Consensus 302 ~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~g 348 (452)
++.+|+|+.+. + .=++.+-+..|+.|. .|||+|.|.-
T Consensus 102 ~~~~DvVf~Al--p----~~~s~~i~~~~~~g~----~VIDlSs~fR 138 (381)
T PLN02968 102 FSDVDAVFCCL--P----HGTTQEIIKALPKDL----KIVDLSADFR 138 (381)
T ss_pred hcCCCEEEEcC--C----HHHHHHHHHHHhCCC----EEEEcCchhc
Confidence 36789999976 2 226777777787776 8999998863
No 320
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.74 E-value=7 Score=43.30 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=23.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|.-|+|+|+|.+|+.|+-.|.+.|+.|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V 29 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHV 29 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcE
Confidence 567999999999998888888889977
No 321
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.57 E-value=7.5 Score=37.61 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=23.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|+|+|.+|+.+...+.+.|..|
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v 26 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRV 26 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeE
Confidence 4899999999999999999999977
No 322
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=63.47 E-value=7.4 Score=40.40 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.8
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+.++..|.+.|..|
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V 27 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQV 27 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeE
Confidence 7999999999999998888889977
No 323
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=63.41 E-value=12 Score=36.07 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCCChhhHH
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF--VDPSRLPELF 240 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~~l~~~~ 240 (452)
.+.-.+|+|+|+|.||.-=++.+.+.|+.+ +.|+..+++.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~ 50 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELK 50 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHH
Confidence 345689999999999999999999999976 6676534433
No 324
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=63.37 E-value=8.1 Score=39.65 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=24.6
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|+|.|+|-+|+.|++.|+.+|+.+
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~v 210 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKV 210 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999976
No 325
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.35 E-value=7.4 Score=39.87 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=24.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcC---CCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLL---PHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~L---Ga~v 230 (452)
...|+|+|+|.+|+.+.-.|.+. |..|
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v 32 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPV 32 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEE
Confidence 35699999999999999999998 9976
No 326
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=63.34 E-value=8.2 Score=38.16 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=23.3
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.++.-+.+.|..|
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V 25 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSV 25 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeE
Confidence 4899999999999999999999987
No 327
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=63.25 E-value=7.3 Score=41.37 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.|.-.|.+.|+.|
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V 30 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASV 30 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeE
Confidence 46999999999999999999999987
No 328
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=63.23 E-value=7 Score=40.35 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=24.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|+.++-.+.+.|..|
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v 29 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSV 29 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcE
Confidence 57999999999999999999999977
No 329
>PRK12367 short chain dehydrogenase; Provisional
Probab=63.17 E-value=32 Score=33.40 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=24.6
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
++...+++|+|+ |-.|+..++.+.+.|+.|
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~V 41 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKV 41 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEE
Confidence 334478899998 779999999999999987
No 330
>PLN02527 aspartate carbamoyltransferase
Probab=63.13 E-value=37 Score=34.66 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCcccccc---cccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCc---HHHHHHHHHHhcC-CCEE--eCCC
Q 012946 164 STPFLTLGA---AYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSG---HASIAAQELFKLL-PHTF--VDPS 234 (452)
Q Consensus 164 ~~P~~~~~~---~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G---~vg~gAi~~a~~L-Ga~v--v~~~ 234 (452)
..|..+.+. .|.+-.+.++....+.. | ++.-.||+++|.+ ++....+..+..+ |+++ +.|+
T Consensus 118 ~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~-------g---~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~ 187 (306)
T PLN02527 118 EIPVINAGDGPGQHPTQALLDVYTIQREI-------G---RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPD 187 (306)
T ss_pred CCCEEECCCCCCCChHHHHHHHHHHHHHh-------C---CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCC
Confidence 468888643 44444444544443332 2 4567899999976 7899988887776 8877 7786
Q ss_pred Ch
Q 012946 235 RL 236 (452)
Q Consensus 235 ~l 236 (452)
.+
T Consensus 188 ~~ 189 (306)
T PLN02527 188 VV 189 (306)
T ss_pred cc
Confidence 65
No 331
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=63.05 E-value=7.4 Score=40.35 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=24.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.||+.+...+.+.|..|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V 28 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDV 28 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcE
Confidence 356999999999999999999999976
No 332
>PRK06139 short chain dehydrogenase; Provisional
Probab=62.46 E-value=30 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+|+|+|+ |-.|+..+..+.+.|+.|
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~V 34 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARL 34 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEE
Confidence 45678999999 789999999999999987
No 333
>PRK05872 short chain dehydrogenase; Provisional
Probab=62.40 E-value=32 Score=34.10 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=24.9
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+|+|+|+ |-.|+...+.+.+.|+.|
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V 36 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKL 36 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 44568999998 779999999999999987
No 334
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=62.30 E-value=7.6 Score=40.18 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|+.+...+.+.|..|
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v 28 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDS 28 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCE
Confidence 57999999999999999999999976
No 335
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=62.16 E-value=7.7 Score=40.91 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=24.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.|+|||+|.+|..|+..|.++|.+|
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V 29 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKV 29 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEE
Confidence 45999999999999999999999987
No 336
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=62.16 E-value=7 Score=41.61 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=23.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-|+|||+|.+|+.|+..|.++|..|
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V 28 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKA 28 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcE
Confidence 4899999999999999999999987
No 337
>PRK07024 short chain dehydrogenase; Provisional
Probab=62.15 E-value=16 Score=35.04 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+ |-.|+..++.+.+.|+.|
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v 29 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATL 29 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEE
Confidence 57888886 889999999999999987
No 338
>PRK07060 short chain dehydrogenase; Provisional
Probab=62.01 E-value=19 Score=33.87 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=24.7
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-+|+..+..+.+.|++|
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V 36 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARV 36 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEE
Confidence 4578999998 889999999999999987
No 339
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=61.97 E-value=8.8 Score=41.51 Aligned_cols=26 Identities=4% Similarity=-0.213 Sum_probs=23.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
++|.|||.|+-|..-..-+.+-|..|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V 27 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKI 27 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeE
Confidence 47999999999999999999999977
No 340
>PRK09126 hypothetical protein; Provisional
Probab=61.95 E-value=7.4 Score=39.95 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++..+.+.|..|
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v 29 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKV 29 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcE
Confidence 45999999999999999999999976
No 341
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=61.93 E-value=28 Score=33.33 Aligned_cols=28 Identities=14% Similarity=-0.116 Sum_probs=23.6
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |..|...++.+.+.|+.|
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~v 37 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDI 37 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 3457888888 679999999999999987
No 342
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=61.88 E-value=18 Score=37.29 Aligned_cols=36 Identities=8% Similarity=-0.136 Sum_probs=26.7
Q ss_pred cCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecC
Q 012946 302 APYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDM 347 (452)
Q Consensus 302 ~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~ 347 (452)
+..+|++|-|. |.-++.+-.... +.|. +|||+|.|.
T Consensus 59 ~~~~D~v~~a~------g~~~s~~~a~~~~~~G~----~VID~ss~~ 95 (339)
T TIGR01296 59 FEGIDIALFSA------GGSVSKEFAPKAAKCGA----IVIDNTSAF 95 (339)
T ss_pred hcCCCEEEECC------CHHHHHHHHHHHHHCCC----EEEECCHHH
Confidence 36789998875 445677777666 6777 899999875
No 343
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=61.75 E-value=8.2 Score=39.20 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=22.8
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|+|.+|+.++..+.+.|..|
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v 25 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKI 25 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEE
Confidence 899999999999999999999977
No 344
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=61.65 E-value=10 Score=32.46 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.7
Q ss_pred eEEEEcC-cHHHHHHHHHHhcC
Q 012946 206 VFVFTGS-GHASIAAQELFKLL 226 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~L 226 (452)
+|.|+|+ |.+|...+..+...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~ 22 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH 22 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC
Confidence 5889995 99999988888775
No 345
>PRK07121 hypothetical protein; Validated
Probab=61.47 E-value=8.1 Score=41.51 Aligned_cols=27 Identities=19% Similarity=0.005 Sum_probs=24.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.-|+|+|+|.+|+.|.-.|...|+.|
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~V 46 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARV 46 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeE
Confidence 356999999999999998888899987
No 346
>PRK08401 L-aspartate oxidase; Provisional
Probab=61.30 E-value=8.7 Score=41.14 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.|+-.|...|+.|
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V 27 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDV 27 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeE
Confidence 35999999999998888888889977
No 347
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=61.17 E-value=8.8 Score=39.57 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+..|+|+|+|.+|+.++..+.+.|..|
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v 32 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSV 32 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999977
No 348
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=61.12 E-value=8.4 Score=39.34 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=22.8
Q ss_pred EEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 207 FVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
|+|+|+|.+|+.++..+.+.| ..|
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v 26 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKI 26 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceE
Confidence 899999999999999999999 876
No 349
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=61.11 E-value=8.5 Score=39.97 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=24.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+..|+|+|+|.+|+.++-.+.+.|+.|
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v 30 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRI 30 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEE
Confidence 457999999999999999999999977
No 350
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=61.09 E-value=6.4 Score=36.72 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|.|+|+|..|.+-+..+...|..|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V 25 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEV 25 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcE
Confidence 6899999999999999999999988
No 351
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=61.04 E-value=29 Score=35.90 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=32.5
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
++.+..+||||+|---.. .+|..++| +||. -|.=+..|.-|--|+
T Consensus 190 ~~av~~aDiIvt~T~s~~---Pil~~~~l---~~G~----hI~aiGad~p~k~El 234 (330)
T COG2423 190 EEAVEGADIVVTATPSTE---PVLKAEWL---KPGT----HINAIGADAPGKREL 234 (330)
T ss_pred HHHhhcCCEEEEecCCCC---CeecHhhc---CCCc----EEEecCCCCcccccC
Confidence 567889999999875433 58889988 7998 566566665555454
No 352
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.00 E-value=20 Score=34.95 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=22.9
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+ |..|+..+..+.+.|+.|
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~V 31 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRV 31 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEE
Confidence 46889998 889999999998899987
No 353
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=60.91 E-value=8.1 Score=40.67 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=22.1
Q ss_pred EEEEcCcHHHHHHHHHHhcCC-CEE
Q 012946 207 FVFTGSGHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LG-a~v 230 (452)
|+|+|+|.+|+.|.-.|.+.| +.|
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V 26 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANV 26 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccE
Confidence 899999999999988888899 877
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=60.74 E-value=9.4 Score=40.41 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=23.6
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.|+..|.+.|..|
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v 29 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKV 29 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeE
Confidence 5999999999999999999999987
No 355
>PRK07326 short chain dehydrogenase; Provisional
Probab=60.53 E-value=21 Score=33.42 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=22.5
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+++|+|+ |..|...+..+...|+.|
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V 33 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKV 33 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEE
Confidence 66888886 889999999888889987
No 356
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=60.52 E-value=10 Score=38.93 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE--eCC
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF--VDP 233 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v--v~~ 233 (452)
|+|+|+|.+|+.++..+.+.|..| +++
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~ 30 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEP 30 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 899999999999988888889977 554
No 357
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=60.48 E-value=8.3 Score=33.31 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=23.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.||+|.|.|..+..++++++.+|++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~t 28 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIET 28 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcc
Confidence 58999999999999999999999975
No 358
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=60.27 E-value=8.7 Score=39.74 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=23.3
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|+|+|.+|+.|+..+.+.|..|
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V 26 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIET 26 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcE
Confidence 4899999999999999999999977
No 359
>PRK08223 hypothetical protein; Validated
Probab=60.02 E-value=3.8 Score=41.47 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+..++|+|+|+|-+|.-++..+-+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGV 51 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGI 51 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCC
Confidence 4567999999999999999999999999
No 360
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=60.02 E-value=7.8 Score=41.64 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC--CEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP--HTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG--a~v 230 (452)
++|+|+|+|.+|+.|..-+++.+ +++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i 28 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEV 28 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcE
Confidence 47999999999999999999998 554
No 361
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=59.96 E-value=8.8 Score=39.26 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++-.+.+.|..|
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v 31 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRV 31 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999976
No 362
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.76 E-value=57 Score=31.79 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
.+|.|||.|+.|..-...+.+.|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCC
Confidence 46999999999998888777766
No 363
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=59.73 E-value=9.1 Score=42.95 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=25.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|+|+|.+|+.|+..+.++|+.|
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~V 219 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDV 219 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcE
Confidence 358999999999999999999999976
No 364
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=59.67 E-value=17 Score=35.04 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+++|+|+ |.+|...+.-+...|+.|
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~v 37 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATI 37 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 34567999998 679998888888899987
No 365
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=59.64 E-value=8.3 Score=41.79 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=23.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|.-.|.+.|+.|
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~V 87 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNP 87 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCE
Confidence 45999999999999998888899987
No 366
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=59.53 E-value=8.7 Score=40.46 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcC----CCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLL----PHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~L----Ga~v 230 (452)
.+|+|||+|.+|+.|+.-+.+. |..|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v 32 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVEL 32 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcE
Confidence 4699999999999999999987 7755
No 367
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=59.52 E-value=42 Score=33.32 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=30.1
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEEe---C-CCChhhHH
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTFV---D-PSRLPELF 240 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~vv---~-~~~l~~~~ 240 (452)
.+....++|+|+ .--|....+.+.+-|++|+ | .++|+++.
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la 47 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALA 47 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHH
Confidence 345678999999 4489999999999999882 2 33466666
No 368
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=59.50 E-value=45 Score=35.38 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=25.4
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+...+|+|+|+ |-.|...+..+.+.|+.|
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~V 205 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKV 205 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 345678999998 889999999898899987
No 369
>PRK06370 mercuric reductase; Validated
Probab=59.47 E-value=9.1 Score=40.72 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=24.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|..|+..|.++|..|
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v 31 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKV 31 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999987
No 370
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=59.36 E-value=9.2 Score=37.76 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=24.6
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.+|+.|...+.+.|..|
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V 47 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKV 47 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcE
Confidence 467999999999999999999999876
No 371
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=59.21 E-value=34 Score=32.75 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=24.7
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+|+|+|+ |..|...++.+.+.|+.|
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v 42 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADI 42 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 34578999998 779999999999999987
No 372
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=58.87 E-value=10 Score=37.50 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=24.3
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.+|+.|...+.+.|..|
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V 51 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKV 51 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeE
Confidence 467999999999999999999999877
No 373
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.85 E-value=11 Score=40.15 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|.|..|.++++.+++.|+.|
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V 40 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKV 40 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEE
Confidence 4568999999999999999999999987
No 374
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=58.80 E-value=6.2 Score=42.77 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=24.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.-|+|||+|.||--|++++.++|+.-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~T 54 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGART 54 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCce
Confidence 456999999999999999999999954
No 375
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.79 E-value=11 Score=38.75 Aligned_cols=27 Identities=7% Similarity=0.034 Sum_probs=24.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
-.+|+|+|+|.+|+.|++.|+.+|+ .|
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~V 213 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRI 213 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 3678999999999999999999999 56
No 376
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=58.68 E-value=13 Score=36.79 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=19.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
.+|.|||.|+.|..-+.-+.+-|
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 58999999999988777776665
No 377
>PRK07832 short chain dehydrogenase; Provisional
Probab=58.66 E-value=26 Score=33.96 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=21.5
Q ss_pred eEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+++|+|+ |-.|+..+..+.+.|+.|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~v 27 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAEL 27 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 5788887 789999999888999987
No 378
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=58.65 E-value=9.4 Score=40.56 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=23.1
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|||+|.+|..|...|.++|..|
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~v 26 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGASV 26 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeE
Confidence 899999999999999999999987
No 379
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=58.63 E-value=37 Score=34.87 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCC
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDME 348 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~g 348 (452)
.+.+..+|+++.|. |.=++.+-+... +.|. .|||+|.|.-
T Consensus 44 ~~~~~~~D~vFlal------p~~~s~~~~~~~~~~g~----~VIDlSadfR 84 (310)
T TIGR01851 44 AKLLNAADVAILCL------PDDAAREAVSLVDNPNT----CIIDASTAYR 84 (310)
T ss_pred hHhhcCCCEEEECC------CHHHHHHHHHHHHhCCC----EEEECChHHh
Confidence 34556789999886 444677777666 5676 8999998853
No 380
>PRK05854 short chain dehydrogenase; Provisional
Probab=58.62 E-value=38 Score=33.97 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=24.9
Q ss_pred CCCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
++...+++|+|+ |-.|...+..+.+.|+.|
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~V 41 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEV 41 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 445678999998 668999999899999987
No 381
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=58.41 E-value=11 Score=40.98 Aligned_cols=29 Identities=7% Similarity=-0.177 Sum_probs=24.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE-eCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF-VDP 233 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~ 233 (452)
.+|.|||.|+-|.+-..-+.+-|..| |..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~N 36 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYN 36 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEEC
Confidence 46999999999999888888889977 443
No 382
>PRK06398 aldose dehydrogenase; Validated
Probab=58.41 E-value=27 Score=33.71 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=24.1
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+..+..+.+.|+.|
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~~V 33 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNV 33 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeE
Confidence 4468999998 779999999999999987
No 383
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=58.39 E-value=70 Score=32.74 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCCceEEEEcC---cHHHHHHHHHHhcCCC-EE--eCCCCh
Q 012946 201 GICPLVFVFTGS---GHASIAAQELFKLLPH-TF--VDPSRL 236 (452)
Q Consensus 201 ~i~p~kv~V~G~---G~vg~gAi~~a~~LGa-~v--v~~~~l 236 (452)
++...+|+++|- ++++..-+..+..+|. .+ +.|+.+
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~ 195 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSL 195 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 456789999999 5999999999999998 66 677654
No 384
>PRK06194 hypothetical protein; Provisional
Probab=58.38 E-value=23 Score=34.50 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+..++.+.+.|+.|
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V 33 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKL 33 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEE
Confidence 4567999997 789999999999999987
No 385
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.34 E-value=9.4 Score=40.27 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|+.|+..|.+.|..|
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V 29 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRV 29 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeE
Confidence 45999999999999999999999977
No 386
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=58.29 E-value=29 Score=34.82 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=24.1
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
....++|||| +-.|..-..-+-+-|..+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~l 33 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNL 33 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 5678999999 888998888888889977
No 387
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=58.28 E-value=9 Score=40.63 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=23.5
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-|+|||+|.+|..|+..|.++|..|
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V 28 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKV 28 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcE
Confidence 3899999999999999999999987
No 388
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.28 E-value=26 Score=34.28 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=23.0
Q ss_pred CCceEEEEcCc---HHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSG---HASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G---~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|++ -.|+...+.+.+.|+.|
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~v 35 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAEL 35 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEE
Confidence 44689999996 48888888888899987
No 389
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=58.16 E-value=10 Score=40.66 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|||+|..|+.|...+.+.|..|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v 27 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRV 27 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeE
Confidence 46999999999999999999999977
No 390
>PRK13984 putative oxidoreductase; Provisional
Probab=57.93 E-value=11 Score=41.72 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+|.+|+.|+..+.++|..|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v 309 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEV 309 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeE
Confidence 4678999999999999999999999976
No 391
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=57.82 E-value=34 Score=36.18 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=25.4
Q ss_pred CCCCceEEEEcC-----------------cHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGS-----------------GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~-----------------G~vg~gAi~~a~~LGa~v 230 (452)
.+...+|+|+|+ |..|....+.+...||.|
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V 228 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADV 228 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEE
Confidence 345688999998 578999999999999987
No 392
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=57.79 E-value=11 Score=38.93 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++..+.+.|..|
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v 27 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKT 27 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeE
Confidence 35999999999999999999999977
No 393
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=57.77 E-value=10 Score=39.25 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=23.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++-.+.+.|..|
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v 28 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEV 28 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEE
Confidence 35999999999999999999999976
No 394
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=57.73 E-value=10 Score=37.93 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=25.0
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCE-E
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHT-F 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~-v 230 (452)
..+|+|+|+|.+|+.+++.|+.+|+. |
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~v 191 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDV 191 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 46899999999999999999999997 6
No 395
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=57.70 E-value=8.3 Score=40.54 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
++|+|+|+|.+|+.|+..+++++.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~ 24 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNK 24 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCC
Confidence 379999999999999999998864
No 396
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.70 E-value=9.6 Score=42.26 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=23.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V 38 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSV 38 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcE
Confidence 56999999999999888888889977
No 397
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=57.55 E-value=11 Score=38.75 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=25.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
....|+|+|+|.+|+.++..+.+.|..|
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V 31 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSV 31 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEE
Confidence 3567999999999999999999999977
No 398
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=57.53 E-value=11 Score=40.37 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=25.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
....|+|+|+|.+|..|+..+.+.|..|
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~V 65 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIET 65 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcE
Confidence 3568999999999999999999999977
No 399
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=57.51 E-value=9.5 Score=40.38 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|+|.+|..|+-.|.+.|+.|
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~V 25 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKV 25 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-E
T ss_pred EEEECccHHHHHHHHHHHHCCCEE
Confidence 899999999999999999999988
No 400
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=57.45 E-value=9.9 Score=40.76 Aligned_cols=26 Identities=15% Similarity=-0.034 Sum_probs=23.9
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.||+-|+..+.+.|..|
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V 28 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPV 28 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcE
Confidence 46999999999999999999999976
No 401
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.44 E-value=9.7 Score=41.12 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=24.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|..|+.|+..+.+.|.+|
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V 29 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKV 29 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEE
Confidence 57999999999999999999999988
No 402
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=57.42 E-value=9.8 Score=41.72 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=22.0
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|+|.+|+.|.-.|...|+.|
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~V 25 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLNT 25 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCcE
Confidence 899999999999988888889977
No 403
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=57.39 E-value=9.5 Score=42.30 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.||+.|+-.|...|+.|
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V 33 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSC 33 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcE
Confidence 45999999999998887787889977
No 404
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=57.36 E-value=9.5 Score=40.39 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEcCcHHHHHHHHHHhcCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LG 227 (452)
+|+|||+|.+|+.|+..+.+.|
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~ 24 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLK 24 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhh
Confidence 5999999999999999998863
No 405
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=57.34 E-value=11 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=25.3
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|.|||+|.+|++|++.+.+.|+.|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v 1811 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTV 1811 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEE
Confidence 358999999999999999999999987
No 406
>PLN03000 amine oxidase
Probab=57.13 E-value=17 Score=42.38 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+|.+|+.|...+.+.|..|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V 210 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKV 210 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcE
Confidence 4578999999999999999999999866
No 407
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=57.09 E-value=8.5 Score=41.27 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|||+|..|+.|...|.+.|..|
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V 24 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPV 24 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcE
Confidence 689999999999999999988765
No 408
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=56.80 E-value=24 Score=38.22 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+...+++|+|+|.+|+.++..+...|+.+
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~~V 358 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGAEL 358 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCCEE
Confidence 445678999999999999999999999976
No 409
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=56.78 E-value=8.3 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=22.1
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|+|+|+|.+|+.|+-.|...|+.|
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~V 24 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHV 24 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCE
Confidence 689999999999999999999977
No 410
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=56.69 E-value=8.4 Score=39.35 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=60.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE-eCCCCh---hhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF-VDPSRL---PELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSR 279 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v-v~~~~l---~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~ 279 (452)
-.+|-+||-|+-|.+-..-+-..|..| |....+ +++.+. |++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~------------Ga~---------------------- 80 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA------------GAR---------------------- 80 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh------------chh----------------------
Confidence 578999999999999999999999977 444333 344422 221
Q ss_pred CCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCH--HHHHHhhcCCCCeEEE-EEeee-cCCCCeee
Q 012946 280 AFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLST--QQLRDLAQKGCPLVGI-SDLTC-DMEGSIEI 353 (452)
Q Consensus 280 ~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~--e~l~~mk~gs~~l~vI-vDvs~-D~gG~iE~ 353 (452)
...+| .++++.+|++|++.--+...--++.- -.++.+++|. +. ||.|. |+.=.-|+
T Consensus 81 ------v~~sP--------aeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~----~~~vDmSTidp~~s~ei 140 (327)
T KOG0409|consen 81 ------VANSP--------AEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGK----KATVDMSTIDPDTSLEI 140 (327)
T ss_pred ------hhCCH--------HHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCC----ceEEeccccCHHHHHHH
Confidence 12244 67888999999998766433222222 1233345665 44 78775 55443333
No 411
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=56.63 E-value=11 Score=40.34 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=24.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-.|+|||+|.+|+.|+..|.++|..|
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v 30 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKT 30 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeE
Confidence 456999999999999999999999987
No 412
>PRK07063 short chain dehydrogenase; Provisional
Probab=56.61 E-value=26 Score=33.49 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=24.6
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+++|+|+ |-.|......+.+.|+.|
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~v 34 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAV 34 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 34578999998 779999999999999987
No 413
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=56.55 E-value=10 Score=44.95 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|||+|.+|+.|+..|.+.|..|
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~V 456 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDV 456 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 68999999999999999999999976
No 414
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=56.53 E-value=36 Score=34.31 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|.|-.|..=...+++-|..+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeE
Confidence 57999999999999999999999876
No 415
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=56.50 E-value=46 Score=33.19 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCcH-HHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGH-ASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~-vg~gAi~~a~~LGa~v 230 (452)
.+...+++|+|+.+ .|+.....|-++||.|
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v 35 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKV 35 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 44567889999966 8888889999999988
No 416
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=56.49 E-value=17 Score=34.61 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.2
Q ss_pred eEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+ |..|...++.+.+.|+.|
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V 27 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKV 27 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEE
Confidence 6888887 889999999999999987
No 417
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.43 E-value=10 Score=41.76 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=23.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V 31 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKV 31 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcE
Confidence 46999999999999888888889977
No 418
>PRK08013 oxidoreductase; Provisional
Probab=56.39 E-value=12 Score=38.86 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++-.+.+.|..|
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v 29 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRV 29 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEE
Confidence 56999999999999999999999977
No 419
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=56.36 E-value=12 Score=36.77 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=23.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
-.+|+|+|+|.+|+.+++.|+.+|+.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~ 146 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAA 146 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 45799999999999999999999996
No 420
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.35 E-value=14 Score=37.58 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=24.9
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|.|+|.+|+.|++.|+.+|+.+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~v 193 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAV 193 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999976
No 421
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.33 E-value=14 Score=38.41 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=24.8
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|.|+|-+|+.|++.|+.+|+.+
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~V 205 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRV 205 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeE
Confidence 467899999999999999999999976
No 422
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.28 E-value=10 Score=42.51 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~V 61 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNV 61 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcE
Confidence 46999999999999888888889977
No 423
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.25 E-value=9.4 Score=40.81 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=24.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
-..|+|||+|-+|++|+..|++.|..
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~ 33 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVP 33 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCC
Confidence 46799999999999999999999986
No 424
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=56.24 E-value=34 Score=35.29 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCE-E
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHT-F 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~-v 230 (452)
.+|+|.|+|-+|+.+++.|+.+|+. +
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~v 212 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERV 212 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 5688889999999999999999983 5
No 425
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=56.19 E-value=30 Score=32.68 Aligned_cols=28 Identities=14% Similarity=-0.035 Sum_probs=23.5
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|...++.+.+.|+.|
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v 33 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGAKV 33 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEE
Confidence 4568899987 889999888888889987
No 426
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=56.11 E-value=9.8 Score=42.55 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=24.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.||..|+..+.++|+.|
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV 30 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKT 30 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcE
Confidence 45999999999999999999999987
No 427
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.07 E-value=14 Score=39.72 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|.|.+|++++..+.+.|+.|
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V 41 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDV 41 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999977
No 428
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=56.04 E-value=11 Score=39.79 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=24.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|..|+..+.+.|..|
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V 31 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQV 31 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeE
Confidence 56999999999999999999999987
No 429
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=56.00 E-value=13 Score=39.66 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=25.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+|.+|.-++.++.++|++|
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~V 298 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEV 298 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEE
Confidence 4579999999999999999999999977
No 430
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=55.89 E-value=11 Score=41.12 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=23.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.|.-.|...|+.|
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~V 30 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRV 30 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeE
Confidence 56999999999999999999999987
No 431
>PRK07804 L-aspartate oxidase; Provisional
Probab=55.85 E-value=11 Score=41.21 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=23.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~V 42 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRV 42 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeE
Confidence 56999999999999988888889977
No 432
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=55.82 E-value=56 Score=33.81 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCc--HHHHHHHHHHhcCCCEE--eCCCCh
Q 012946 201 GICPLVFVFTGSG--HASIAAQELFKLLPHTF--VDPSRL 236 (452)
Q Consensus 201 ~i~p~kv~V~G~G--~vg~gAi~~a~~LGa~v--v~~~~l 236 (452)
++...+|+++|.+ +|...-+..+..+|+.+ +.|+.+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKEL 191 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCccc
Confidence 5677999999997 78898899999999977 777665
No 433
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.76 E-value=17 Score=36.72 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=24.8
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+|+|.|+|.+|+.|++.|+.+|+.|
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~v 192 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATV 192 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeE
Confidence 468999999999999999999999976
No 434
>PRK08818 prephenate dehydrogenase; Provisional
Probab=55.75 E-value=37 Score=35.65 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=29.7
Q ss_pred hhhcCCCcEEEeccccCCCCCcccCHHHHHH-------hhcCCCCeEEEEEeeecCCCCeee
Q 012946 299 EKIAPYASAIINCIYWEKQFPRLLSTQQLRD-------LAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 299 ~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~-------mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
.+.++.+|+||-|+-+. .+.+-+++ ++++. +|.|++.=-+..++.
T Consensus 46 ~~~v~~aDlVilavPv~------~~~~~l~~l~~~~~~l~~~~----iVtDVgSvK~~i~~~ 97 (370)
T PRK08818 46 ATLLQRADVLIFSAPIR------HTAALIEEYVALAGGRAAGQ----LWLDVTSIKQAPVAA 97 (370)
T ss_pred HHHhcCCCEEEEeCCHH------HHHHHHHHHhhhhcCCCCCe----EEEECCCCcHHHHHH
Confidence 45678899999997554 33333333 47788 999998755444443
No 435
>PLN02568 polyamine oxidase
Probab=55.64 E-value=12 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=22.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCC
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
..+|+|||+|.+|+.|...+.+.|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g 28 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSS 28 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcc
Confidence 467999999999999999999888
No 436
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=55.57 E-value=11 Score=40.94 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=24.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..++|||+|++|++|+-.+-.+|..|
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v 150 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKV 150 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeE
Confidence 46899999999999999999999976
No 437
>PRK05868 hypothetical protein; Validated
Probab=55.51 E-value=11 Score=38.83 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=23.1
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.+|+.+.-.+.+.|..|
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v 27 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSV 27 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCE
Confidence 6999999999999999999999966
No 438
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=55.50 E-value=12 Score=38.32 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.+|+.+.-.+.+.|..|
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v 33 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASV 33 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeE
Confidence 356999999999999999999999976
No 439
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=55.24 E-value=12 Score=39.69 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=24.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|||+|.+|+.|+..|.+.|..|
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v 31 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRV 31 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEE
Confidence 45999999999999999999999987
No 440
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=55.16 E-value=23 Score=34.83 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=18.8
Q ss_pred EEEEcC-cHHHHHHHHHHhcCC
Q 012946 207 FVFTGS-GHASIAAQELFKLLP 227 (452)
Q Consensus 207 v~V~G~-G~vg~gAi~~a~~LG 227 (452)
|+|+|+ |.+|.+.+..+...|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 579999 999999999888888
No 441
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=55.15 E-value=12 Score=40.11 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=23.8
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.|...|.+.|..|
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V 29 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKV 29 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeE
Confidence 5999999999999999999999988
No 442
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=55.05 E-value=25 Score=36.50 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.4
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCC-CEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLP-HTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LG-a~v 230 (452)
..|+|+|+ |-||+.|++.|+..| +.|
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~~~~v 186 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGTAAIQLAKHAGAIKV 186 (347)
T ss_pred CeEEEEeCCcHHHHHHHHHHHhcCCcEE
Confidence 46777766 789999999999999 455
No 443
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.03 E-value=11 Score=42.22 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=23.1
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V 34 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRV 34 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCE
Confidence 45999999999998888888889977
No 444
>PRK08324 short chain dehydrogenase; Validated
Probab=55.01 E-value=32 Score=38.81 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+ |-.|+..+..+.+.|+.|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~V 449 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACV 449 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEE
Confidence 4478999995 999999999999999977
No 445
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.99 E-value=11 Score=40.57 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=25.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.||+|+|.|+.|+.|++.+.+.|+.|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v 33 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEV 33 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeE
Confidence 578999999999999999999999987
No 446
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=54.78 E-value=12 Score=39.49 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=24.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|+-|+..|.+.|..|
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V 29 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRV 29 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEE
Confidence 56999999999999999999999988
No 447
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=54.77 E-value=12 Score=39.18 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=22.9
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|+|+|.+|+.|+..|.+.|..|
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V 27 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRV 27 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeE
Confidence 5899999999999999888889877
No 448
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=54.74 E-value=10 Score=40.20 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=19.8
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|||+|.+|+-|+..|.+.|+.|
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V 26 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARV 26 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--E
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999987
No 449
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=54.62 E-value=12 Score=39.90 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=24.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|+.|+..|.++|..|
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V 30 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKT 30 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999987
No 450
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=54.49 E-value=76 Score=32.83 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCCCceEEEEcCc--HHHHHHHHHHhcCCCEE--eCCCCh
Q 012946 201 GICPLVFVFTGSG--HASIAAQELFKLLPHTF--VDPSRL 236 (452)
Q Consensus 201 ~i~p~kv~V~G~G--~vg~gAi~~a~~LGa~v--v~~~~l 236 (452)
.+...+|+++|-+ +|+..-+..+..+|+++ +.|+.+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKAL 192 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchh
Confidence 4567899999997 58888888999999987 777665
No 451
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=54.47 E-value=16 Score=39.51 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=24.6
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+|.+|+.|+..|.+.|..|
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V 169 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTV 169 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeE
Confidence 69999999999999999999999976
No 452
>PRK06179 short chain dehydrogenase; Provisional
Probab=54.47 E-value=47 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.1
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+ |-.|...+..+.+.|+.|
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V 31 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRV 31 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEE
Confidence 46888887 889999888888899987
No 453
>PRK06126 hypothetical protein; Provisional
Probab=54.43 E-value=11 Score=40.91 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=25.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+.+|+|+|+|.||+.+.-.|.+.|..|
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v 33 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDS 33 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcE
Confidence 3567999999999999999999999966
No 454
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=54.36 E-value=15 Score=40.03 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=24.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.+|+.+...+.+.|+.|
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v 49 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPV 49 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcE
Confidence 467999999999999999999999976
No 455
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=54.33 E-value=13 Score=37.70 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=23.2
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|+|+|.+|+.|...+..-|.+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~v 27 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREV 27 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEE
Confidence 3899999999999999999999977
No 456
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.30 E-value=49 Score=34.35 Aligned_cols=103 Identities=15% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE--eCCC--ChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCC
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF--VDPS--RLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSS 278 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v--v~~~--~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~ 278 (452)
+-.+|.|+|+|-.|.-|+..|++||.+| ++-. ..++.. ..+|+. .|....
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~-----------~~LGAd---~fv~~~------------ 234 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAI-----------KSLGAD---VFVDST------------ 234 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHH-----------HhcCcc---eeEEec------------
Confidence 5578999999889999999999999988 5443 445655 356776 221111
Q ss_pred CCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeee
Q 012946 279 RAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEI 353 (452)
Q Consensus 279 ~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~ 353 (452)
+.| ...+++.+-.|-+|.|+.--.+.|. +..++-||++. -+|=|+.-.+ .+++
T Consensus 235 ---------~d~-----d~~~~~~~~~dg~~~~v~~~a~~~~---~~~~~~lk~~G----t~V~vg~p~~-~~~~ 287 (360)
T KOG0023|consen 235 ---------EDP-----DIMKAIMKTTDGGIDTVSNLAEHAL---EPLLGLLKVNG----TLVLVGLPEK-PLKL 287 (360)
T ss_pred ---------CCH-----HHHHHHHHhhcCcceeeeeccccch---HHHHHHhhcCC----EEEEEeCcCC-cccc
Confidence 111 1124556667888888774333332 34556667776 4555665555 6666
No 457
>PRK07680 late competence protein ComER; Validated
Probab=54.29 E-value=16 Score=36.02 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.7
Q ss_pred eEEEEcCcHHHHHHHHHHhcCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LG 227 (452)
+|.|||+|+.|..-+.-+.+-|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCC
Confidence 6899999999998777777666
No 458
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=54.13 E-value=11 Score=37.42 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCC
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPH 228 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa 228 (452)
.+...+|+|+|.|-||..|+++|-+-|+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGi 54 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGI 54 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCC
Confidence 4567899999999999999999999998
No 459
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=54.08 E-value=1.3e+02 Score=32.04 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=71.7
Q ss_pred ceEEEecccCCCCCCHHHHHHHHHcCCeEE------Eeeccccc-CCCccccchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 012946 92 AYAFFSHTHKAQPENMALLDKILAQRVSLF------DYELVEGN-QGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYS 164 (452)
Q Consensus 92 ~~~~fs~~~~~q~~n~~ll~~l~~k~it~i------~~E~i~~~-~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~~~~ 164 (452)
.-.++|+..++. ..++-+-|-+-|++.. +++.++.. .+.. +...+.++++.| ++|. .++
T Consensus 168 ~VniiG~~~~~d--~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~~~~~~-~~~~~~~~~~~A----------~~L~-~~G 233 (427)
T PRK02842 168 SLVLVGSLADVV--EDQLTLEFKKLGIGVVGFLPARRFTELPAIGPGTV-VALAQPFLSDTA----------RALR-ERG 233 (427)
T ss_pred cEEEEEeCCcch--HHHHHHHHHHcCCeeEEEeCCccHHHHhhcCcCcE-EEEeCHHHHHHH----------HHHH-HcC
Confidence 447788876543 3555555556778875 22333222 1222 334455555322 2332 357
Q ss_pred CCcccccccccCccHHHHHHHHHHh-hH------------------HHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhc
Q 012946 165 TPFLTLGAAYMYPSLAAAKAAIISV-GE------------------EIATEGLPSGICPLVFVFTGSGHASIAAQELFKL 225 (452)
Q Consensus 165 ~P~~~~~~~~~~~~~~~~~~~~~~~-g~------------------~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~ 225 (452)
.|++..+.++......+.+++|.+. |. .+... ...+.-.+|+|.|.+.-..+-...+..
T Consensus 234 iP~~~~~~P~G~~~T~~~L~~la~~~g~~~~~~~~~~~~er~~~~~~l~~~--~~~l~Gkrvai~g~~~~~~~la~~L~e 311 (427)
T PRK02842 234 AKVLTAPFPLGPEGTRAWLEAAAAAFGIDPDGLEEREAPAWERARKALEPY--RELLRGKRVFFLPDSQLEIPLARFLSR 311 (427)
T ss_pred CccccCCCCcChHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHh--hhhcCCcEEEEECCchhHHHHHHHHHH
Confidence 8888887766666666666555442 11 11111 123456789999988888888888888
Q ss_pred -CCCEE
Q 012946 226 -LPHTF 230 (452)
Q Consensus 226 -LGa~v 230 (452)
||.++
T Consensus 312 elGm~~ 317 (427)
T PRK02842 312 ECGMEL 317 (427)
T ss_pred hCCCEE
Confidence 99987
No 460
>PRK06057 short chain dehydrogenase; Provisional
Probab=54.02 E-value=27 Score=33.33 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=24.4
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|+|+ |-.|...+..+.+.|+.|
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v 34 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATV 34 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 4568999999 889999999999999987
No 461
>PRK14694 putative mercuric reductase; Provisional
Probab=53.93 E-value=12 Score=39.99 Aligned_cols=28 Identities=21% Similarity=0.105 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..-.|+|||+|.+|+.|...|.++|..|
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v 32 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARV 32 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcE
Confidence 4456999999999999999999999977
No 462
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=53.82 E-value=12 Score=40.11 Aligned_cols=26 Identities=23% Similarity=0.047 Sum_probs=24.4
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|..|...|.++|+.|
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V 30 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLET 30 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcE
Confidence 46999999999999999999999987
No 463
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=53.71 E-value=25 Score=35.11 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=24.0
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCC-EE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa-~v 230 (452)
.+|+|.|+ |-+|+.|++.|+.+|+ .|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~V 183 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRV 183 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 68999998 9999999999999998 66
No 464
>PRK06180 short chain dehydrogenase; Provisional
Probab=53.69 E-value=44 Score=32.50 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.6
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+|+|+|+ |-.|...++.+.+.|+.|
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V 31 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRV 31 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEE
Confidence 56888887 889999999998999987
No 465
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=53.67 E-value=15 Score=38.92 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=24.5
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+||.|+|+|-||+--...+..+|++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeV 26 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEV 26 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeE
Confidence 47999999999999999999999988
No 466
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.61 E-value=12 Score=41.56 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=23.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|+|+|.+|+.|+-.|...|+.|
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V 38 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKT 38 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcE
Confidence 56999999999999998888889977
No 467
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.56 E-value=52 Score=31.06 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=21.7
Q ss_pred eEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+ |..|+..+..+.+.|+.|
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~V 28 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARL 28 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEE
Confidence 6788886 889999998888899987
No 468
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=53.54 E-value=25 Score=35.61 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
+..+|+|+|+|.+|+.|++.|+.+|+ .+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v 205 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRV 205 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 45679999999999999999999999 66
No 469
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=53.50 E-value=12 Score=40.34 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+|+|+|+|.+|+.|...+.+.|..|
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v 25 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEV 25 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcE
Confidence 5899999999999999999999866
No 470
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=53.45 E-value=7.1 Score=34.71 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
+..+|.|||+|+||..=...+.+.|..|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v 36 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEV 36 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeE
Confidence 4689999999999999999999999977
No 471
>PLN02740 Alcohol dehydrogenase-like
Probab=53.44 E-value=14 Score=38.08 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=24.4
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCC-EE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPH-TF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa-~v 230 (452)
-.+|+|+|+|.+|+.|++.|+.+|+ .|
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~V 226 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKI 226 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcE
Confidence 3679999999999999999999999 45
No 472
>PRK10015 oxidoreductase; Provisional
Probab=53.40 E-value=13 Score=39.33 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.|+..+.+.|..|
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~V 31 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDV 31 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999987
No 473
>PRK06483 dihydromonapterin reductase; Provisional
Probab=53.31 E-value=36 Score=32.00 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=22.5
Q ss_pred ceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
.+++|+|+ |-.|....+.+.+.|+.|
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V 29 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPV 29 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeE
Confidence 56899997 679999999999999987
No 474
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.22 E-value=57 Score=34.24 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=26.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..+.+++|+|.|..|...++.+.+.|..+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v 257 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSV 257 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeE
Confidence 45789999999999999999999999976
No 475
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=53.21 E-value=14 Score=37.70 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.0
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.++.-|.+.|..|
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V 26 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKT 26 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeE
Confidence 4899999999999888777779877
No 476
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=53.21 E-value=14 Score=39.87 Aligned_cols=24 Identities=8% Similarity=-0.180 Sum_probs=22.1
Q ss_pred EEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 207 FVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 207 v~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
|.|||.|+-|..-+.-+.+.|..|
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V 25 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTV 25 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeE
Confidence 789999999999999999999977
No 477
>PRK06185 hypothetical protein; Provisional
Probab=53.09 E-value=13 Score=38.53 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=24.2
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|+|+|.+|+.++-.+.+.|..|
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v 32 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDV 32 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcE
Confidence 467999999999999999999999976
No 478
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=53.04 E-value=12 Score=41.13 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=23.2
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.|+..|.+.|..|
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V 30 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDT 30 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCE
Confidence 45999999999999999999888866
No 479
>PRK05867 short chain dehydrogenase; Provisional
Probab=53.00 E-value=35 Score=32.55 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=23.7
Q ss_pred CceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
..+++|+|+ |-.|...+..+.+.|+.|
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V 36 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQV 36 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 467899998 779999999999999987
No 480
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=52.99 E-value=12 Score=40.61 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.-|+|+|+| +|+.|+-.|.+.|+.|
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V 32 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSV 32 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcE
Confidence 3569999999 9998888888889987
No 481
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=52.85 E-value=13 Score=41.42 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=22.7
Q ss_pred ceEEEEcCcHHHHHHHHHHhcC--CCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLL--PHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~L--Ga~v 230 (452)
.-|+|+|+|.||+.|+-.|... |+.|
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V 39 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKV 39 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeE
Confidence 5699999999999888888777 8877
No 482
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.82 E-value=17 Score=38.66 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=25.3
Q ss_pred CCceEEEEcCcHHHHH-HHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIA-AQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~g-Ai~~a~~LGa~v 230 (452)
...+|+|+|.|..|.+ +++.++++|+.|
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V 34 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKV 34 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeE
Confidence 4568999999999999 599999999988
No 483
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.69 E-value=16 Score=36.93 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=24.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHT 229 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~ 229 (452)
..+|+|+|+|.+|+.|++.|+.+|+.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~ 186 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAK 186 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999995
No 484
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=52.69 E-value=14 Score=37.52 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.4
Q ss_pred eEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 206 VFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.|+|||+|.+|+.++..+.+.|..|
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V 26 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSV 26 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeE
Confidence 4899999999999998888889876
No 485
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=52.69 E-value=14 Score=39.77 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-|.+++|+|+|+.|.--..++.+||++|
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~V 199 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKV 199 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 4899999999999999999999999987
No 486
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=52.66 E-value=13 Score=40.85 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.1
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-..|+|+|+|.+|+.|.-.|...|+.|
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v 35 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDV 35 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeE
Confidence 356999999999999998898899977
No 487
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=52.65 E-value=15 Score=40.85 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHhcCC
Q 012946 200 SGICPLVFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 200 ~~i~p~kv~V~G~G~vg~gAi~~a~~LG 227 (452)
.++...+|+|||+|.+|+.|+..|.+-|
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg 45 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDG 45 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcc
Confidence 4556789999999999999998888753
No 488
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=52.51 E-value=18 Score=33.17 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 201 GICPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 201 ~i~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.+...+|+|+|+|..|..++..+...|..|
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V 193 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSV 193 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEE
Confidence 445689999999999999999998887655
No 489
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=52.50 E-value=25 Score=36.41 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.8
Q ss_pred CceEEEEcC-cHHHHHHHHHHhcCCC
Q 012946 204 PLVFVFTGS-GHASIAAQELFKLLPH 228 (452)
Q Consensus 204 p~kv~V~G~-G~vg~gAi~~a~~LGa 228 (452)
..+|+|+|+ |.+|.--++.+...++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~h 29 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDF 29 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCC
Confidence 478999998 9999999999985443
No 490
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=52.34 E-value=75 Score=32.74 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.5
Q ss_pred eEEEEcCcHHHHHHHHHHhcCC
Q 012946 206 VFVFTGSGHASIAAQELFKLLP 227 (452)
Q Consensus 206 kv~V~G~G~vg~gAi~~a~~LG 227 (452)
+|.|.|+|++|+..++.+...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 5899999999999999988764
No 491
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=52.34 E-value=13 Score=43.95 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...|+|||+|.+|+.|+..+.+.|+.|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V 189 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARV 189 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcE
Confidence 457999999999999999999999976
No 492
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=52.28 E-value=14 Score=37.43 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.3
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|||+|.+|..++.-|.+.|..|
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V 29 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRV 29 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeE
Confidence 45999999999999998888889977
No 493
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=52.21 E-value=15 Score=43.15 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=25.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
...+|+|||+|.+|.-++.++.++|+.|
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~V 473 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNV 473 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEE
Confidence 3478999999999999999999999976
No 494
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=52.09 E-value=13 Score=41.50 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=22.8
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
.-|+|||+|.||+.|+-.|...|+.|
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V 55 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKT 55 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcE
Confidence 56999999999998888888889977
No 495
>PRK05876 short chain dehydrogenase; Provisional
Probab=51.96 E-value=27 Score=34.23 Aligned_cols=28 Identities=18% Similarity=0.021 Sum_probs=23.7
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+..++.+.+.|+.|
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~V 33 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARV 33 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 4567899987 779999999999999987
No 496
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.83 E-value=16 Score=39.18 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=23.7
Q ss_pred CceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
-.+|+|+|.|+.|.+|++.+.+ |+.|
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v 31 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDV 31 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEE
Confidence 3689999999999999999996 9987
No 497
>PRK08226 short chain dehydrogenase; Provisional
Probab=51.75 E-value=40 Score=32.21 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 202 ICPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 202 i~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
+...+++|+|+ |-.|...++.+.+.|+.|
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~V 33 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANL 33 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 34578888886 889999999999999987
No 498
>PRK06184 hypothetical protein; Provisional
Probab=51.68 E-value=15 Score=39.48 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=24.0
Q ss_pred ceEEEEcCcHHHHHHHHHHhcCCCEE
Q 012946 205 LVFVFTGSGHASIAAQELFKLLPHTF 230 (452)
Q Consensus 205 ~kv~V~G~G~vg~gAi~~a~~LGa~v 230 (452)
..|+|+|+|.+|+.++-.+.+.|+.|
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v 29 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSF 29 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcE
Confidence 56999999999999999999999976
No 499
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=51.64 E-value=47 Score=31.85 Aligned_cols=28 Identities=11% Similarity=-0.079 Sum_probs=23.5
Q ss_pred CCceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 203 CPLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 203 ~p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
...+++|+|+ |-.|+..++.+.+.|+.|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~v 35 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADI 35 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 3467888887 779999999999999987
No 500
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=51.62 E-value=53 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=23.5
Q ss_pred CceEEEEcC-cHHHHHHHHHHhcCCCEE
Q 012946 204 PLVFVFTGS-GHASIAAQELFKLLPHTF 230 (452)
Q Consensus 204 p~kv~V~G~-G~vg~gAi~~a~~LGa~v 230 (452)
..+++|+|+ |-.|...+..+.+.|++|
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v 33 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARV 33 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEE
Confidence 467899987 889999999999999987
Done!