BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012947
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of
Non-Ribosomal Peptide Synthetase From Mycobacterium
Tuberculosis
Length = 478
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 8 PELFDVIILGASGFTGKYVVREALKLFN 35
PEL V++ GA+GF G+Y+V E L+ +
Sbjct: 71 PELRTVLLTGATGFLGRYLVLELLRRLD 98
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 23 GKYVVREALKLFNFPSSPIKSLALAGRNPTRVKQALQWASPSHSLSIPILTA 74
G Y + E + PS IK L + R P RVK+ + P +P++T
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPE---VPLITG 214
>pdb|3Q6L|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein (Fabp4) At 1.4 Ang. Resolution
Length = 152
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 145 LVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVAN 204
LVS+ FD E+GV F +R+ A PN I +S+ D + + T+++ +
Sbjct: 31 LVSSENFDDYMKEVGVGFATRKVAGMAKPNMI---ISVNGDVITIKSESTFKNTEISFIL 87
Query: 205 AQELQKL 211
QE ++
Sbjct: 88 GQEFDEV 94
>pdb|1TOU|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Non-Covalent Ligand
pdb|1TOW|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Carboxylic Acid Ligand
pdb|2NNQ|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With
((2'-(5-Ethyl-3,4-Diphenyl-1h-Pyrazol-1-Yl)-3-
Biphenylyl)oxy)acetic Acid
pdb|3FR2|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
pdb|3FR5|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 131
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 145 LVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVAN 204
LVS+ FD E+GV F +R+ A PN I +S+ D + + T+++ +
Sbjct: 10 LVSSENFDDYMKEVGVGFATRKVAGMAKPNMI---ISVNGDVITIKSESTFKNTEISFIL 66
Query: 205 AQELQKL 211
QE ++
Sbjct: 67 GQEFDEV 73
>pdb|3P6C|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With Citric Acid
pdb|3P6D|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxy-3-Methylphenyl) Propionic Acid
pdb|3P6E|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxyphenyl) Propionic Acid
pdb|3P6F|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)-3- Phenyl Butyric Acid
pdb|3P6G|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (R)- Ibuprofen
pdb|3P6H|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)- Ibuprofen
pdb|3RZY|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4, Apo Form At
1.08 Ang Resolution
Length = 139
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 145 LVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVAN 204
LVS+ FD E+GV F +R+ A PN I +S+ D + + T+++ +
Sbjct: 18 LVSSENFDDYMKEVGVGFATRKVAGMAKPNMI---ISVNGDVITIKSESTFKNTEISFIL 74
Query: 205 AQELQKL 211
QE ++
Sbjct: 75 GQEFDEV 81
>pdb|2HNX|A Chain A, Crystal Structure Of Ap2
Length = 136
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 145 LVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVAN 204
LVS+ FD E+GV F +R+ A PN I +S+ D + + T+++ +
Sbjct: 15 LVSSENFDDYMKEVGVGFATRKVAGMAKPNMI---ISVNGDVITIKSESTFKNTEISFIL 71
Query: 205 AQELQKL 211
QE ++
Sbjct: 72 GQEFDEV 78
>pdb|3FR4|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 132
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 145 LVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVAN 204
LVS+ FD E+GV F +R+ A PN I +S+ D + + T+++ +
Sbjct: 11 LVSSENFDDYMKEVGVGFATRKVAGMAKPNMI---ISVNGDVITIKSESTFKNTEISFIL 67
Query: 205 AQELQKL 211
QE ++
Sbjct: 68 GQEFDEV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,773,648
Number of Sequences: 62578
Number of extensions: 492296
Number of successful extensions: 1081
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 18
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)