Query 012948
Match_columns 452
No_of_seqs 257 out of 2090
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.1E-52 8.9E-57 408.2 48.1 393 43-442 14-414 (455)
2 PRK10189 MATE family multidrug 100.0 4.3E-48 9.3E-53 383.3 49.9 395 43-444 26-434 (478)
3 PRK00187 multidrug efflux prot 100.0 4.4E-48 9.4E-53 383.2 49.2 399 40-445 4-417 (464)
4 PRK09575 vmrA multidrug efflux 100.0 6.4E-46 1.4E-50 367.2 47.5 394 41-441 7-407 (453)
5 PRK10367 DNA-damage-inducible 100.0 7.4E-46 1.6E-50 364.0 47.3 380 43-430 6-396 (441)
6 PRK01766 multidrug efflux prot 100.0 1.1E-45 2.4E-50 367.1 48.9 395 43-444 9-414 (456)
7 TIGR00797 matE putative efflux 100.0 1.9E-37 4.1E-42 297.1 42.9 338 54-394 1-341 (342)
8 KOG1347 Uncharacterized membra 100.0 3.6E-34 7.7E-39 279.0 34.3 396 43-444 25-424 (473)
9 TIGR01695 mviN integral membra 100.0 4.5E-32 9.8E-37 273.4 45.9 364 48-424 2-379 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 1.8E-31 4E-36 268.1 41.2 364 49-424 2-383 (488)
11 PRK15099 O-antigen translocase 100.0 2.3E-30 5.1E-35 254.2 41.0 357 48-424 3-363 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.9E-24 4.1E-29 212.8 43.9 337 76-424 5-354 (451)
13 COG0728 MviN Uncharacterized m 99.9 2.1E-22 4.6E-27 195.1 44.5 372 44-424 5-388 (518)
14 PRK10459 colanic acid exporter 99.9 6.4E-23 1.4E-27 206.1 40.1 350 45-424 4-356 (492)
15 COG2244 RfbX Membrane protein 99.9 1.5E-21 3.2E-26 195.8 35.6 359 43-424 3-363 (480)
16 PRK00187 multidrug efflux prot 99.9 8.3E-22 1.8E-26 195.6 28.6 206 40-246 230-442 (464)
17 COG0534 NorM Na+-driven multid 99.9 2.6E-21 5.6E-26 190.5 27.7 210 40-251 235-446 (455)
18 PRK10189 MATE family multidrug 99.9 4.9E-21 1.1E-25 190.2 27.5 212 40-252 253-466 (478)
19 PRK01766 multidrug efflux prot 99.9 5E-21 1.1E-25 190.4 26.7 208 40-248 233-442 (456)
20 PRK09575 vmrA multidrug efflux 99.9 2E-20 4.4E-25 185.3 26.6 205 40-247 228-435 (453)
21 TIGR01695 mviN integral membra 99.9 7.8E-19 1.7E-23 177.2 30.2 207 40-248 217-428 (502)
22 PRK10367 DNA-damage-inducible 99.8 2.6E-17 5.7E-22 162.0 26.3 199 43-248 229-431 (441)
23 PF01943 Polysacc_synt: Polysa 99.8 6.3E-16 1.4E-20 142.9 33.2 270 49-335 2-272 (273)
24 TIGR02900 spore_V_B stage V sp 99.8 2.3E-17 5E-22 165.9 25.0 204 40-248 219-434 (488)
25 PF03023 MVIN: MviN-like prote 99.8 3.7E-16 8E-21 154.2 32.2 207 42-250 194-405 (451)
26 COG0728 MviN Uncharacterized m 99.8 6.2E-15 1.3E-19 143.4 35.2 209 40-250 226-439 (518)
27 PF01554 MatE: MatE; InterPro 99.7 9.3E-19 2E-23 148.7 4.0 160 54-214 1-162 (162)
28 PRK10459 colanic acid exporter 99.7 1.5E-14 3.2E-19 145.6 34.9 201 40-246 201-403 (492)
29 PRK15099 O-antigen translocase 99.7 1.4E-15 3.1E-20 149.5 26.9 200 40-246 209-410 (416)
30 PF01554 MatE: MatE; InterPro 99.7 2E-17 4.4E-22 140.5 7.1 157 275-437 1-161 (162)
31 COG2244 RfbX Membrane protein 99.7 6.9E-14 1.5E-18 140.3 26.8 186 42-233 209-396 (480)
32 PF13440 Polysacc_synt_3: Poly 99.6 1.4E-12 3.1E-17 119.0 31.5 246 65-334 3-250 (251)
33 TIGR00797 matE putative efflux 99.5 3.2E-12 6.9E-17 122.5 18.4 144 275-424 1-144 (342)
34 PF07260 ANKH: Progressive ank 99.1 5.4E-07 1.2E-11 80.9 28.9 313 42-367 7-343 (345)
35 KOG1347 Uncharacterized membra 99.0 2E-09 4.4E-14 105.8 9.8 204 42-246 243-450 (473)
36 PF04506 Rft-1: Rft protein; 98.8 7.1E-06 1.5E-10 82.2 26.1 370 50-424 5-417 (549)
37 KOG2864 Nuclear division RFT1 98.6 8.7E-05 1.9E-09 70.0 26.3 366 44-424 6-397 (530)
38 PF14667 Polysacc_synt_C: Poly 98.6 7.5E-06 1.6E-10 67.8 17.8 81 168-250 2-82 (146)
39 PF04506 Rft-1: Rft protein; 98.5 2E-05 4.2E-10 79.1 21.6 202 46-248 253-470 (549)
40 KOG2864 Nuclear division RFT1 98.3 0.00048 1E-08 65.2 22.5 201 46-248 239-449 (530)
41 PF01943 Polysacc_synt: Polysa 97.6 0.00051 1.1E-08 63.1 10.6 73 40-113 199-272 (273)
42 COG4267 Predicted membrane pro 97.3 0.15 3.2E-06 47.7 28.0 141 94-249 72-212 (467)
43 PF13440 Polysacc_synt_3: Poly 96.7 0.013 2.8E-07 53.1 10.3 67 47-113 184-251 (251)
44 PF07260 ANKH: Progressive ank 96.7 0.16 3.5E-06 46.5 16.2 152 263-424 7-161 (345)
45 COG4267 Predicted membrane pro 76.4 74 0.0016 30.5 14.1 117 120-243 320-437 (467)
46 PF04505 Dispanin: Interferon- 55.8 76 0.0017 23.0 6.9 38 324-361 36-73 (82)
47 PF14667 Polysacc_synt_C: Poly 52.1 22 0.00047 28.7 4.0 30 391-424 2-31 (146)
48 PF06808 DctM: DctM-like trans 51.2 2.5E+02 0.0055 27.6 13.5 83 259-364 202-284 (416)
49 PF03904 DUF334: Domain of unk 49.8 1.5E+02 0.0032 26.1 8.5 39 117-155 141-179 (230)
50 PF02487 CLN3: CLN3 protein; 46.1 3E+02 0.0065 27.0 15.8 51 43-93 240-295 (402)
51 PF05975 EcsB: Bacterial ABC t 41.4 3.4E+02 0.0074 26.3 16.6 40 118-157 89-130 (386)
52 PF06609 TRI12: Fungal trichot 37.1 5E+02 0.011 27.0 26.7 17 365-381 329-345 (599)
53 PF10160 Tmemb_40: Predicted m 35.6 3.4E+02 0.0074 24.6 11.7 78 314-393 84-161 (261)
54 PTZ00206 amino acid transporte 33.2 5.1E+02 0.011 25.9 12.7 17 108-124 112-128 (467)
55 PF05313 Pox_P21: Poxvirus P21 32.3 1.6E+02 0.0036 24.8 5.9 27 223-249 136-162 (189)
56 COG0798 ACR3 Arsenite efflux p 31.8 4.5E+02 0.0098 24.9 15.5 28 223-250 304-331 (342)
57 COG4536 CorB Putative Mg2+ and 28.6 4.5E+02 0.0097 25.4 8.7 95 52-157 60-156 (423)
58 PF14184 YrvL: Regulatory prot 27.7 3.2E+02 0.007 21.9 12.7 98 129-228 7-105 (132)
59 PF06781 UPF0233: Uncharacteri 26.7 2.6E+02 0.0057 20.6 6.8 41 54-94 35-77 (87)
60 KOG2468 Dolichol kinase [Lipid 26.4 6.5E+02 0.014 25.0 14.7 75 273-356 379-453 (510)
61 PF03814 KdpA: Potassium-trans 23.9 7.6E+02 0.017 25.2 9.9 129 220-365 52-180 (552)
62 PF02592 DUF165: Uncharacteriz 23.7 4E+02 0.0086 21.6 11.3 23 224-246 68-90 (145)
63 KOG1330 Sugar transporter/spin 23.7 7.6E+02 0.016 24.8 10.6 54 59-113 38-91 (493)
64 PF04505 Dispanin: Interferon- 20.8 3.3E+02 0.0073 19.6 5.9 33 107-139 41-73 (82)
65 PF02592 DUF165: Uncharacteriz 20.6 4.6E+02 0.01 21.2 12.2 36 104-142 11-46 (145)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.1e-52 Score=408.22 Aligned_cols=393 Identities=24% Similarity=0.341 Sum_probs=375.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
+..|+++++++|++++++...+++.+|+.++||+|++++++.+++.++..+. ..+..|++.+..+.+||++|+||++++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 4899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 012948 123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS 201 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 201 (452)
++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.++..+.....+.+|+.||+|.+++.+
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 999999999999999888877 9999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHHHHHHHHHHhHHHH
Q 012948 202 ALPMAIHFGIAYAFVYL-TS-LGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPSAA 278 (452)
Q Consensus 202 ~~~~~v~i~l~~~li~~-~~-~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 278 (452)
++++++|+++|++|+++ ++ +|+.|+++||++++.+.+++.+++++++++ ......+..+.+++.+|++++.|+|.++
T Consensus 173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~ 252 (455)
T COG0534 173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL 252 (455)
T ss_pred HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence 99999999999999998 46 999999999999999999999999987765 2333334445668999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 012948 279 MVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLL 358 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (452)
++..+...+...+.+++++| ++.+|+|+++.++.++.++++.|++++..|++++++|+||+|++++..+.+.++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~ 330 (455)
T COG0534 253 ESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI 330 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhccch
Q 012948 359 ALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLCGLI 434 (452)
Q Consensus 359 ~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~~i~ 434 (452)
++..+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+++ ||.||+|.+ ++++|.+++|
T Consensus 331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~l----rg~g~~~~~~~~~~~~~~~~~lp 406 (455)
T COG0534 331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVL----RGAGDAKIPFIISLLSYWGFRLP 406 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 999999999 8889999999
Q ss_pred HHHHHHHH
Q 012948 435 WQHSISLA 442 (452)
Q Consensus 435 ~~~~l~~~ 442 (452)
+++.+.+.
T Consensus 407 ~~~~l~~~ 414 (455)
T COG0534 407 LAYLLGFF 414 (455)
T ss_pred HHHHHhhh
Confidence 99999886
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.3e-48 Score=383.31 Aligned_cols=395 Identities=16% Similarity=0.204 Sum_probs=364.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
+..|++++.++|..+++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3589999999999999999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 012948 123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLH--QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIF 199 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 199 (452)
++..++++.++++++++.+++ +.+.++++++++ .|+|+.+.+..|+++..++.++..+.....+.+|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988887 888999999984 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhcc----cccccchhHHHHHHHHHHHHHHHHHHHHhcc--cccccccC-CChhhHHHHHHHHHH
Q 012948 200 FSALPMAIHFGIAYAFVYL----TSLGFKGASLAASVSLWISMLMLVTYVLCAK--KFEHTWEG-FSFESFSFILTILKL 272 (452)
Q Consensus 200 ~~~~~~~v~i~l~~~li~~----~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~ 272 (452)
.++++.++|+++++++++. +++|+.|+++|+.+++++..++..+++++++ ..+.++++ +.+.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 9999999999999999975 3789999999999999999888776665432 22222222 223357889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012948 273 ALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTV 352 (452)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~ 352 (452)
|+|.+++.........+.+.+++++| ++++|+|+++.++.++.+++..|++++..|++++++|+||.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999988888888889987 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhh
Q 012948 353 KLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGST 428 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~ 428 (452)
++++.+++..+++++++++++.++|++|+|+.+.+...+++.++..++++++.+..+.+ +|.||++.+ +.+.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l----rg~G~t~~~~~i~~~~~ 418 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL----KGARDARYAMWVSMLGM 418 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999 7889
Q ss_pred hhccchHHHHHHHHHh
Q 012948 429 WLCGLIWQHSISLACQ 444 (452)
Q Consensus 429 ~~~~i~~~~~l~~~~~ 444 (452)
|++++|+++.+.+..+
T Consensus 419 ~~v~ip~~~ll~~~~~ 434 (478)
T PRK10189 419 WGCRVVAGYILGIMLG 434 (478)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999998877654
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.4e-48 Score=383.20 Aligned_cols=399 Identities=21% Similarity=0.253 Sum_probs=365.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
+|++..|++++.++|..++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++..+.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 6788999999999999999999999999999999999999999999999999998 888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 199 (452)
|++++.+++++.+.++++++..++..+.++++++++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988877755779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhccc----ccccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-ccCCChhhHHHHHHHHHHH
Q 012948 200 FSALPMAIHFGIAYAFVYLT----SLGFKGASLAASVSLWISMLMLVTYVLCAKKFE-HT-WEGFSFESFSFILTILKLA 273 (452)
Q Consensus 200 ~~~~~~~v~i~l~~~li~~~----~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~ 273 (452)
.++++.++|++++++++++. ++|+.|+++|+.+++.+..+...++++++++.+ .+ +++..+.+++.+|++++.+
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999852 589999999999999888777666665443221 11 1222234578899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012948 274 LPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVK 353 (452)
Q Consensus 274 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~ 353 (452)
+|.++++..+...+.++..+++++| ++++|++++++++..+.+++..+++++..+.++|++|+||.|++++..|.+..
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999997 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCC--cH---HHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----
Q 012948 354 LSVLLALVVVLALGFGHNIWAGFFSN--SP---EIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV---- 424 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---- 424 (452)
+++.++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++ ++.||+|.+
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l----rg~G~~~~~~~~~ 396 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI----RGLKDARTTFLIG 396 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH----hccCccHHHHHHH
Confidence 99999999999999999999999974 43 678889999999999999999999999999 999999999
Q ss_pred hhhhhhccchHHHHHHHHHhH
Q 012948 425 VGSTWLCGLIWQHSISLACQL 445 (452)
Q Consensus 425 ~~~~~~~~i~~~~~l~~~~~~ 445 (452)
+++.|++++|+++.+.+.+++
T Consensus 397 ~~~~~~~~ipl~~ll~~~~~~ 417 (464)
T PRK00187 397 LACYWLVGAPLAWLLAFTLGW 417 (464)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 788899999999998886543
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=6.4e-46 Score=367.20 Aligned_cols=394 Identities=18% Similarity=0.166 Sum_probs=359.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 41 DLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 41 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
+++..|++++.+.|..++++...+.+.+|+.++++ +|++++++++.+.++..+. ..+..+++.+.++.++|++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 34578999999999999999999999999999999 5999999999999999988 888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
|++++..++++.+.++++++..++ ..+.++++++++.|++..+.+.+|+++..++.++..+.....+.+|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999988887 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHHHHHHHHHHhHHH
Q 012948 199 FFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPSA 277 (452)
Q Consensus 199 ~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~ 277 (452)
..++.+.++|+++++++++.+++|+.|+++|+.+++.+..++.+++++++++ .+.+.+ ..+.+++..|++++.|+|..
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~ig~P~~ 244 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLK-ELRFNWSLAPKIVLLGSSSF 244 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeec-cCCcCHHHHHHHHHhChhHH
Confidence 9999999999999999999888999999999999999999988777764433 222222 22345778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 012948 278 AMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 357 (452)
++.....+...+.+.+.+++| +++++|+|+++.++..+..++..|++++..|.++|++|+||+|++++..+.+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g-~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~ 323 (453)
T PRK09575 245 FMYLYGSFVVALHNRLFMEYG-SALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL 323 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 999999999888888888887 2468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccccCC-cHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh---hhhhhhccc
Q 012948 358 LALVVVLALGFGHNIWAGFFSN-SPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV---VGSTWLCGL 433 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---~~~~~~~~i 433 (452)
.+++.+++++.+++++.++|++ |+|+.+.+..++++..++.++++++.+..+.+ ++.||++.+ -+..+++.+
T Consensus 324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~v~i 399 (453)
T PRK09575 324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYF----MAVNQGGKALFISIGNMLIQL 399 (453)
T ss_pred HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcHHHHHHHHHhHHHHH
Confidence 9999999999999999999995 78999999999999999999999999999999 999999999 223345667
Q ss_pred hHHHHHHH
Q 012948 434 IWQHSISL 441 (452)
Q Consensus 434 ~~~~~l~~ 441 (452)
|+.+.+..
T Consensus 400 p~~~ll~~ 407 (453)
T PRK09575 400 PFLFILPK 407 (453)
T ss_pred HHHHHHHH
Confidence 77666543
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=7.4e-46 Score=364.01 Aligned_cols=380 Identities=16% Similarity=0.149 Sum_probs=339.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHL-GQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 121 (452)
++.|+++++++|..+++++..+.+.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4689999999999999999999999999999997 678999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 012948 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 200 (452)
+++..++++.+.++++++..++ ..+.++++++++.|+|+.+.+.+|+++..++.++..+..+..+.+|+.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988877 788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCChhhHHHHHHHHHHHhHHHHH
Q 012948 201 SALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-TWEGFSFESFSFILTILKLALPSAAM 279 (452)
Q Consensus 201 ~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~p~~~~ 279 (452)
++++.++|+++++++++.+++|+.|+++|+.+++.+.+++..++++++++.+. +.+.++...++..|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 99999999999999999888999999999999999998888777765432221 11111111134789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 012948 280 VCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLA 359 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (452)
+..+...+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.++|++|+||+|++|+..+++.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 77999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHH----Hhhhhhcccccccccccchh----hhhhhh
Q 012948 360 LVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQ----GVLSDADASELMAQGWQEDV----VGSTWL 430 (452)
Q Consensus 360 ~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~~----~~~~~~ 430 (452)
.+.+++++.+++++.++|++|+|+.+.+..++++.++..+..+.. .+..+.+ +|. |+|.+ +++.|+
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~l----rg~-dt~~~~~~~~~~~~~ 396 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGAT----RAA-EMRNSMAVAAAGFAL 396 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc----chH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987653322233 3455666 665 69988 455553
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.1e-45 Score=367.10 Aligned_cols=395 Identities=24% Similarity=0.362 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
+.+|++++.++|..++++...+...+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|+|++
T Consensus 9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 5799999999999999999999999999999999999999999999998777 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 012948 123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS 201 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 201 (452)
++..++++.+.+.+++++.++ +.+.+++..+++.|++..+.+..|+++..++.++..+...+++++|+.|+++.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999988887 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhcc----cccccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccccCCChhhHHHHHHHHHHHhH
Q 012948 202 ALPMAIHFGIAYAFVYL----TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFE--HTWEGFSFESFSFILTILKLALP 275 (452)
Q Consensus 202 ~~~~~v~i~l~~~li~~----~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~p 275 (452)
+++.++|+++++++++. +++|+.|+++++.+++.+..++..++.+++++.+ +.+.++.+.+++.+|++++.++|
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P 247 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP 247 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccch
Confidence 99999999999999864 4689999999999999999998888876554322 11222333457789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 012948 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLS 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 355 (452)
.+++...+...+.+...+++++| ++++++|+++.++.++..++..+++.+..+.++|++|+||++++++..+.+.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~ 325 (456)
T PRK01766 248 IGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVG 325 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 7799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhc
Q 012948 356 VLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLC 431 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~ 431 (452)
+.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++++++.+..+++ +|.||+|.+ +++.|++
T Consensus 326 ~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l----~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 326 LGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGAL----RGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 999999999 7778889
Q ss_pred cchHHHHHHHHHh
Q 012948 432 GLIWQHSISLACQ 444 (452)
Q Consensus 432 ~i~~~~~l~~~~~ 444 (452)
++|.++.+.+..+
T Consensus 402 ~i~~~~~l~~~~~ 414 (456)
T PRK01766 402 GLPLGYILALTDP 414 (456)
T ss_pred HHHHHHHHHhccC
Confidence 9999888876543
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.9e-37 Score=297.15 Aligned_cols=338 Identities=31% Similarity=0.516 Sum_probs=311.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHH
Q 012948 54 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITS 133 (452)
Q Consensus 54 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 133 (452)
|..+++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..|.+++++|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 012948 134 LFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIA 212 (452)
Q Consensus 134 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~i~l~ 212 (452)
.+++++.+++ .++.+++.++++.+++..+.+..+++++.++.++..+.....+.+|+.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999999888 889999999998788888999999999999999999999999999999999999999999999999999
Q ss_pred hHhhc-ccc-cccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012948 213 YAFVY-LTS-LGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEIL 290 (452)
Q Consensus 213 ~~li~-~~~-~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 290 (452)
++++. .++ +|+.|+++++.+++++..++..++.+|+++.+.++++..+.+++..|+++++++|..+.++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 456 7899999999999999999888887664444433333334457889999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012948 291 VFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGH 370 (452)
Q Consensus 291 ~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (452)
+.+++.++ +.++++|+++.++.++...++.+++++..|.++++++++|.+++++..+++.++.+.++++.+.++++++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCcHHHHHHHHHHHHHH
Q 012948 371 NIWAGFFSNSPEIIKEFASLTPLL 394 (452)
Q Consensus 371 ~~i~~lf~~~~~~~~~~~~~l~i~ 394 (452)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=278.98 Aligned_cols=396 Identities=41% Similarity=0.649 Sum_probs=376.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
.+.|++++++.|.++..+.......+++.++||+|+.++++.+++.+..+.....+..|+..+..+..+|++|.++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 48899999999999999999999999999999999999999999999999877899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 012948 123 GIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSA 202 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 202 (452)
....+++..+....+++...++.+.+++...+++++++...+..|.++..+..+..........++|++++.....+...
T Consensus 105 g~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~ 184 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGL 184 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHH
Q 012948 203 LPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCL 282 (452)
Q Consensus 203 ~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 282 (452)
....+++++++++++.+++|..|++++..++++........|..... .+..|..+..+ ++.++++++.++|.+++..+
T Consensus 185 ~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 185 VALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999988886544 55566666666 88999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012948 283 EYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVV 362 (452)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (452)
+++.+.+.....+.+++...+++..++..++....++++.+++.++..++++.+|+|+++++|...+.....++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999987788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhccchHHHH
Q 012948 363 VLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLCGLIWQHS 438 (452)
Q Consensus 363 ~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~~i~~~~~ 438 (452)
+..++..++.+..+|++|+|+.+......++++...++++.+.+..+.. +|.|+++.. +.+++++|+|.+..
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva----~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVA----RGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheE----EeeccccceEEEeeeeeeEecCcceeE
Confidence 9999999999999999999999999999999999999999999999999 999999999 88999999998877
Q ss_pred HHHHHh
Q 012948 439 ISLACQ 444 (452)
Q Consensus 439 l~~~~~ 444 (452)
+.+..+
T Consensus 419 l~~~~~ 424 (473)
T KOG1347|consen 419 LGFFTK 424 (473)
T ss_pred EEEEEe
Confidence 765443
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.5e-32 Score=273.45 Aligned_cols=364 Identities=15% Similarity=0.064 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhccchhhHHHH
Q 012948 48 QVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLEL-AGATLANSWATVTGFAFM-IGLSGALETLCGQGFGAKHYRMLGI 124 (452)
Q Consensus 48 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~ 124 (452)
+.|.+.-..+++++..+.+++|..++++ +|++++ ++++++.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 999999 899999999877623333 468888777776653322 57777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 012948 125 YLQASWITSLFFSI-IISFL-WIYTEPILILL--HQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (452)
Q Consensus 125 ~~~~~~~~~~~~~i-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 200 (452)
.+.++.......+. +..++ +++.+++.+++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776666554444 44455 77888888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhcccccccchhH--HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHH
Q 012948 201 SALPMAIHFGIAYAFVYLTSLGFKGAS--LAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAA 278 (452)
Q Consensus 201 ~~~~~~v~i~l~~~li~~~~~gi~G~~--~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 278 (452)
+++.+++++...+++. +++|..|++ +++.+++.+..++..++.+|++. +.+. ++ +.+++.+|++++.+.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLKP-RF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccC-cC-CCCChhHHHHHHHHHHHHH
Confidence 9999888776544444 378999988 99999999998888777655431 1111 11 1235788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 012948 279 MVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYM-ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL 357 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 357 (452)
.+....+...++..+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++|+||.+++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988877776 6789999999999998775 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccccCC----cHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 358 LALVVVLALGFGHNIWAGFFSN----SPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+++|.+++++++++++.++|.+ |+|..+.+..++++++++.++.+++.+..+.+ ++.||+|.+
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l----~a~g~~~~~ 379 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAF----YARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HhccCCccC
Confidence 9999999999999999999876 55778889999999999999999999999999 999999988
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.8e-31 Score=268.14 Aligned_cols=364 Identities=15% Similarity=0.173 Sum_probs=306.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHH
Q 012948 49 VVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (452)
Q Consensus 49 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 127 (452)
.|.+.|..+++++..+.+++|+.+++| +|++++|+++.+.++..+.......|++++..+.++|..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 8999999999999999987344456999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 012948 128 ASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMA 206 (452)
Q Consensus 128 ~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 206 (452)
.++.+.++.+++.+++ ..+.+++.+.++.+++. ..++++..+..++..+....++.+|+.+|.+.....++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988877 77777777766666543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHhHhhc-----ccccccchhHHHHHHHHHHHHHHHHHHHHhcccccc--cccCCChhhHHHHHHHHHHHhHHHHH
Q 012948 207 IHFGIAYAFVY-----LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALPSAAM 279 (452)
Q Consensus 207 v~i~l~~~li~-----~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~ 279 (452)
+++.+...++. ..++|+.|+++++.+++.+..++..++.+|+++.+. .+.+..+.+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 98877655543 224677888899999999998887766654433221 12222334567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----C-hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012948 280 VCLEYWAFEILVFLAGLMP----N-SE---LTTSLI-AMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAV 350 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~----~-~~---~~~a~~-~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~ 350 (452)
++...+....+..+++++. . .. ..++.| +++.++.++...+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988876531 0 01 223333 4566788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 351 TVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+.++...++.|.++++..++|++.++|.++++ +..+++++++..++.+++....+.+ ++.||+|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l----~~~g~~~~~ 383 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSIL----QGLGKQKVA 383 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcchHH
Confidence 99999999999999999999999999886543 5778999999999999999999999 999999988
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.3e-30 Score=254.24 Aligned_cols=357 Identities=12% Similarity=0.007 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHH
Q 012948 48 QVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYL 126 (452)
Q Consensus 48 i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~ 126 (452)
+.|.+.+...++++..+.+++...+++| +|++++|.++...++..++......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688889999999999999999999999 99999999999999999874555888888989999988 67889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012948 127 QASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPM 205 (452)
Q Consensus 127 ~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 205 (452)
+.++.+.++.+++.+++ +.+.+|+...++.+++. ..++.+..+..+...+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 88889999877766652 24556666666677888899999999999999999999999
Q ss_pred HHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHH
Q 012948 206 AIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYW 285 (452)
Q Consensus 206 ~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 285 (452)
++|+.+ +++++. ..|+.|+++|+.+++.+..+...++++|+++.+.+..++ +.+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444442 249999999999999998887777776544422222122 23577899999999999999999999
Q ss_pred HHHHHHHHHh-cCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012948 286 AFEILVFLAG-LMPNSELTTSLIAMCVNTES-VAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVV 363 (452)
Q Consensus 286 ~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~-~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
....++.+++ .+| ++++|.|+++.|+.+ +...+..+++++..|.+++. +|.++.++..++..++...++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 889999999999977 45788999999999999995 6789999999999999999999999
Q ss_pred HHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 364 LALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 364 ~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+++++++|++.+++.+|+ ++.+.+++++++++.++...+......+ ...++++..
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~----~~~~~~~~~ 363 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLV----IAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 999999999999999876 6668889999999999988888887777 677776655
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.96 E-value=1.9e-24 Score=212.84 Aligned_cols=337 Identities=15% Similarity=0.125 Sum_probs=292.9
Q ss_pred cC-hHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 012948 76 LG-QLELAGATLANSWATVTGFAFM-IGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILI 152 (452)
Q Consensus 76 lg-~~~~~~~~~~~~i~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 152 (452)
+| .++..+|.++.++..++...+. .++.++..|..++.. ++++|+.++..+....+..+..++++++ +++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 4466799999999999844454 468999999999998 8899999999999998888888888887 899999999
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhHhhcccccc---cchhH
Q 012948 153 LL--HQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLG---FKGAS 227 (452)
Q Consensus 153 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~g---i~G~~ 227 (452)
++ +.+++..+.+..++++..+..++..+..++.+++|+++|...+....++.++..++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 557888999999999999999999999999999999999999999988888765554444333 466 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 012948 228 LAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLI 307 (452)
Q Consensus 228 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 307 (452)
++..++..+..++.+...+|.... .+. .++ .+.+..|++++...|..+......+...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FRP-KFD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-ccc-cCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999998888888654422 111 111 12466899999999999999999999999999999987 5689999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----CcHH
Q 012948 308 AMCVNTESVAYM-ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFS----NSPE 382 (452)
Q Consensus 308 ~i~~~i~~~~~~-~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~~ 382 (452)
+-++++.+++.. +..+++++..|.+++...++|.++.++..++.++....+.+|.+++++.+++++.++.. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 999999999885 47799999999999999999999999999999999999999999999999999999874 3667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 383 IIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 383 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
..+.....+.+++++.++.+++.++...+ ++.||+|.+
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~f----ya~~~~~~~ 354 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVF----YALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHccCcHhH
Confidence 78899999999999999999999999999 999999999
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.94 E-value=2.1e-22 Score=195.09 Aligned_cols=372 Identities=13% Similarity=0.069 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHhhhccchhh
Q 012948 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQ-LELAGATLANSWATVTGFAFMI-GLSGALETLCGQGFGAKHYR 120 (452)
Q Consensus 44 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~i~~~~~~~~~~-gl~~a~~~~vs~~~g~~~~~ 120 (452)
..+.++|.+.-....++++.+.+++-..+++. +|. ....++.++.++.+++-..+.. +++++..|...++..++++|
T Consensus 5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 45677888888889999999999998888888 997 5667999999999998555554 46899999999998888788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 012948 121 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILL-HQ--DPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIP 196 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 196 (452)
+.++..+....+...+.+..+++ .++.+.+.+.. +. |++....+....+++.+..++..+.....+.+++.+|...
T Consensus 85 ~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 85 AARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 88888777776777777777777 77777777444 33 3343446888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHH
Q 012948 197 LIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPS 276 (452)
Q Consensus 197 ~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 276 (452)
+.+..+..++.-+.....+.........+.+++..++-+.+.++.+..++|.+...+....+ +.+..|++.+.-.|.
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~ 241 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPA 241 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHH
Confidence 99999888887665555555432223568889999999999999999997665322211111 236789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 012948 277 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAY-MITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLS 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 355 (452)
.+.....+++..+++.+.+.+. +-+++.++-++|+.++.. .+..+++++..|.+|++..++|.++.++..+++++.+
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ 319 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLT 319 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999986 558899999999999999 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccC----CcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 356 VLLALVVVLALGFGHNIWAGFFS----NSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~i~~lf~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+++++|.++++.++++++.++.. -+++.....++.+..++++.++..+..+....+ ++.+|+|.+
T Consensus 320 lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~F----YAr~d~ktP 388 (518)
T COG0728 320 LLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVF----YAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHccCCCcC
Confidence 99999999999999999999874 255667889999999999999999999999999 999999999
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=6.4e-23 Score=206.15 Aligned_cols=350 Identities=14% Similarity=0.107 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHH
Q 012948 45 AKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLG 123 (452)
Q Consensus 45 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~ 123 (452)
.++..+.+.+..++++...+..++...+++| +|++++|.++.+..+..+.......|++++.. |. .++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~---- 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH---- 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----
Confidence 4678889999999999999999999999999 99999999999999999885566677777643 22 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 012948 124 IYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSA 202 (452)
Q Consensus 124 ~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 202 (452)
+.......+.+..+++..++ ..+.+++..+++ +++. ...+++..+..++..+.......+++.++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 23344555666666666665 555555555554 3332 34567777778888888889999999999999998888
Q ss_pred HHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHH
Q 012948 203 LPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCL 282 (452)
Q Consensus 203 ~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 282 (452)
...++..++.+.+.. .++|..+.+++..+++.+..+...+..+++ + +.++ ..+++..|++++++.|....+..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~~~----~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y-RPAL----HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C-Cccc----eecHHHHHHHHhhhHHHHHHHHH
Confidence 888877777666555 378899999999999887766544333222 1 1111 12356789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 012948 283 EYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYM-ITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALV 361 (452)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (452)
..+..+++.++++.+. |++++|.|+.+.++.+.... +...++++..|..++. ++|.++.++..++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988875 48899999999999887654 4556888999999885 578899999999999999999999
Q ss_pred HHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 362 VVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 362 ~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+++++.+++|++..++.+|+ +..+...+.++++..++..+.......+ ++.||+|..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l----~a~g~~~~~ 356 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLL----LAKGRADLS 356 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCccchh
Confidence 99999999999999888766 6778999999999999999999999999 999999997
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.92 E-value=1.5e-21 Score=195.83 Aligned_cols=359 Identities=17% Similarity=0.160 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 121 (452)
+..+++.|.+.....+++...+..++....++| +|++++|.++.+.++..++......|+..+..+.++++.++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788999999999999999999999999999 9999999999999999998666668999999999999877666665
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 012948 122 LGIY-LQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (452)
Q Consensus 122 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 200 (452)
.+.. ........+..+++.........+. ++ .....++......++........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5555 5555544444444444332222222 12 23445677888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHH
Q 012948 201 SALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMV 280 (452)
Q Consensus 201 ~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 280 (452)
.+.+ ..-+...+.+. +.......++...+..........+.+++++... .... +..++..|+.++.++|..+.+
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLK-RPIL-RFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccc-CchhHHHHHHHHHhhHHHHHH
Confidence 4444 11122222222 1344566777777777766666666542222111 1111 113688999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 012948 281 CLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 360 (452)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (452)
....+..+.+.++++++. +++++|.|+.+.++......+..+++.+..|.+++.+.+++.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 361 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 361 ~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
|..+++..+++++..++.+++ +..+...+.++++..++.++.......+ ++.|+++..
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l----~~~g~~~~~ 363 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLL----QALGKQRLL 363 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHH----HHcCcchhh
Confidence 999999999999999988776 4458999999999999999999999999 999999999
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=8.3e-22 Score=195.62 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=192.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
++++..|+++|.++|..++++.......+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6777899999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQ--DP---SISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSI 193 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 193 (452)
|++++..+.++.++.+.+++.+++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..++.+..+.+||.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988887 8899999999853 43 78899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012948 194 VIPLIFFSALPM-AIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 194 ~~~~~~~~~~~~-~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
+|.++..++++. ++++++++++.+.+++|+.|+|+++.+++.+..++....++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 69999999999877899999999999999998877766664
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=2.6e-21 Score=190.48 Aligned_cols=210 Identities=21% Similarity=0.270 Sum_probs=199.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
+|++..|++++.++|..++++.......+.+.+++++|++.+|+++++.++.++. ..+..|++++.++.+++++|+||+
T Consensus 235 ~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~~ 313 (455)
T COG0534 235 PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGNY 313 (455)
T ss_pred CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7888999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
|++++..+.+..++.++++..+++ +++++++.++|..|+|+.+.+..++++.....++.+.+.+..+.+||.||+|.++
T Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~ 393 (455)
T COG0534 314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF 393 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 012948 199 FFSALPMA-IHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKF 251 (452)
Q Consensus 199 ~~~~~~~~-v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~ 251 (452)
..++.+.+ +.+++.+++.... +|..|.|++...++.+..+...+++++++|.
T Consensus 394 ~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 394 IISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999887 6688888888743 9999999999999999999999988765543
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=4.9e-21 Score=190.23 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=196.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
+|++.+|++++.+.|..++.....+...+.+.+++++|++++++++++.++.++. ..+..|++++.++.++|++|++|+
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 5778999999999999999999999999988999999999999999999999998 889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
|++++..+.+..++.+.+++.+++ .++++++.++|..|+|+.+.+..++++.++..++.++..+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999999998888 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 012948 199 FFSALPMA-IHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFE 252 (452)
Q Consensus 199 ~~~~~~~~-v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~ 252 (452)
+.++.+.. +.+++.+++....++|+.|+|++..+++.+..++..+.+++.+|.+
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99998875 7778888876656899999999999999999998888876665544
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=5e-21 Score=190.44 Aligned_cols=208 Identities=16% Similarity=0.202 Sum_probs=195.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
++++..|++++.++|..++++.......++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 5677899999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
+++++..+.++.++..++++.+++ +.+.+++.++|..|+++.+.+..|+++..+..++..+.....+.+||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999988887 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 199 FFSALPM-AIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 199 ~~~~~~~-~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
..++++. ++++++.+++.+.+++|+.|+|+++.+++.+..++..+++++.
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 5899999998877789999999999999999999887777543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=2e-20 Score=185.34 Aligned_cols=205 Identities=13% Similarity=0.184 Sum_probs=189.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccch
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQ-LELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 118 (452)
+|++..|++++.+.|..+++....+...+...+++++|+ +++++++++.++..+. ..+..|++.+.++.++|++|+||
T Consensus 228 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 228 FNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCC
Confidence 677889999999999999999999999999999999885 6899999999999998 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 012948 119 YRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQ-DPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIP 196 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 196 (452)
+|++++..+.++.+++..+++.+++ +.+++++.++|+. |+|+.+.+..|+++..++.++..+..+..+.+||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999999988 8899999999985 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 012948 197 LIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (452)
Q Consensus 197 ~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~ 247 (452)
+++.+....++++++.+++.. .+|+.|+|+++.+++.+..+...+++++
T Consensus 387 ~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 387 ALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888888764 4799999999999999988877776654
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.85 E-value=7.8e-19 Score=177.21 Aligned_cols=207 Identities=20% Similarity=0.177 Sum_probs=188.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
++++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++..++...+..+++++..|.+++++|++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45678999999999999999999999999998855599999999999999999873456789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQ----DPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIV 194 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 194 (452)
+++++..+++..+...++++.+++ ..+++++.+++.+ ++|..+.+..++++.+++.++..+.....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999999988 8899999988754 56778889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 195 IPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 195 ~~~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
|.+++.+....++|++++++++. .+|..|+++|+.+++.+..++..++.+|+
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999885 68999999999999999999888777544
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.80 E-value=2.6e-17 Score=162.03 Aligned_cols=199 Identities=18% Similarity=0.118 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
+..|+++|.+.|..+++........+.+.+++++|++++++++++.++.++. ..+..|++++.++.++|++|++|+|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4689999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC---hhHHH
Q 012948 123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSI---VIPLI 198 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~ 198 (452)
++..+.+..+..+.+++.+++ +.+++++.++|.+|+|+.+.+..++++..+..+.........+.++|.+| +|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999999888 88999999999999999999999999988764433344444445555554 99999
Q ss_pred HHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 199 FFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 199 ~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
+.+.++..+ ..+.. +++|..|+|++..+++.+..++..+.++++
T Consensus 388 ~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 388 AVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887553 11122 257999999999999999998888776544
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.79 E-value=6.3e-16 Score=142.95 Aligned_cols=270 Identities=17% Similarity=0.196 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHH
Q 012948 49 VVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (452)
Q Consensus 49 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 127 (452)
.|.+......++...+.+++...+++| +|++++|.++...++..++......|++++..+.+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888899999999999999999999 99999999999999999984556889999999999886432 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 012948 128 ASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAI 207 (452)
Q Consensus 128 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v 207 (452)
......++.+++........ ..++.++. . ..+........+.........+++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444443333332221 13333322 1 1222222222256788888999999999999999999999988
Q ss_pred HHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012948 208 HFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAF 287 (452)
Q Consensus 208 ~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 287 (452)
..+....++.. +.+..+..++..++..+..++..++.+|+.+ .+....+++..|++++.+.|..+.+....+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666653 4458899999999999988888888865543 12222337789999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012948 288 EILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNE 335 (452)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~ 335 (452)
+.+.++++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999886 589999999999999999999999999999999975
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.79 E-value=2.3e-17 Score=165.91 Aligned_cols=204 Identities=13% Similarity=0.127 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------H---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQ------L---ELAGA-TLANSWATVTGFAFMIGLSGALET 108 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~i~~~~~~~~~~gl~~a~~~ 108 (452)
.+++..|++++.+.|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..++ ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 456789999999999999999999999999999987 432 1 23333 3556777777 7888999999999
Q ss_pred HHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012948 109 LCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRF 187 (452)
Q Consensus 109 ~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 187 (452)
.++++.|++|+++.++..++...+...++++.+++ ..++++++.++..++ .+..++++++++.++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887 889999998876543 3577899999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 188 LQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 188 l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
+++.||+|..++.++...++|++++++++..+++|+.|+++++.+++.+..++..++.+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998744578999999999999999999888887643
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.79 E-value=3.7e-16 Score=154.16 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhH
Q 012948 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM 121 (452)
Q Consensus 42 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 121 (452)
++..|++++...|..++....++...+|+.+.+.+++.++++++++.++.+++...+..+++++..|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999999999999999999999999999998678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhH
Q 012948 122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLH----QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIP 196 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 196 (452)
.++..++++...+.+.++.++. +.+++|+++++. -++|..+.....+++.+++.++.++..++...+.+.||+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999988 999999998653 36677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012948 197 LIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKK 250 (452)
Q Consensus 197 ~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~ 250 (452)
+++.++++.++|++++.+++. .+|..|.++|+.++.++.+++..+.++|+.+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999988886 7999999999999999999998888865543
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.76 E-value=6.2e-15 Score=143.43 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=192.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
++.+..|++.+...|..++....++..++|+.+.+.+.+.+.+.+.++.++.+++...+..++++...|..|++..++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 44468999999999999999999999999999999999999999999999999997899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLH----QDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIV 194 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 194 (452)
++.++..++++.++++..++.++. ..+++|+.+.+. -+++....+.+.+.....+.++..+..++...+.+.+|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998 999999998652 345667778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012948 195 IPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKK 250 (452)
Q Consensus 195 ~~~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~ 250 (452)
|.|++..+++.++|+.+++.+.. .+|..|.++++.++.++.+...++..+|+..
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999977775 6788899999999999999988888876654
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=9.3e-19 Score=148.73 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHH
Q 012948 54 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITS 133 (452)
Q Consensus 54 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 133 (452)
|..+++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+|++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 012948 134 LFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPM-AIHFGI 211 (452)
Q Consensus 134 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~v~i~l 211 (452)
++++++..++ ..+.+++.++++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.++..++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999999999 899998
Q ss_pred HhH
Q 012948 212 AYA 214 (452)
Q Consensus 212 ~~~ 214 (452)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=99.74 E-value=1.5e-14 Score=145.59 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=176.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccch
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 118 (452)
++++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+++...+...++....|..++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 456788999999999999999999999999999999 99999999999999998874556666788888999886 678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 012948 119 YRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 197 (452)
+++.++.+++...+...++++++++ ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 8899999999999999999998887 889999998765543 5668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012948 198 IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 198 ~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
+..+++...++++..+.+.. ++|+.|+++++.+++.+......++..
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777665 689999999999999998887777774
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.74 E-value=1.4e-15 Score=149.47 Aligned_cols=200 Identities=13% Similarity=-0.012 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccch
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 118 (452)
+|++..|++++++.|..++++...+...+|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 677889999999999999999999999999999985 99999999999999988443788999999999999995 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHH
Q 012948 119 YRMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPL 197 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 197 (452)
+|+.++..++.......++++.+++ .++++++++++.+++ ++.+.+++++++++.++............+.++++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999888888877 799999999887764 3446778899888888887777777777788888888
Q ss_pred HHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012948 198 IFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 198 ~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
....+....++++++++++. .+|..|+++++.+++.+..++......
T Consensus 364 ~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999986 689999999999999999887776664
No 30
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=2e-17 Score=140.49 Aligned_cols=157 Identities=23% Similarity=0.325 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 012948 275 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL 354 (452)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 354 (452)
|.+++++.+...+.++..+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhh
Q 012948 355 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWL 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~ 430 (452)
...++++.+++++++++++.++|++|+|+.+.+..++++..+..++.++.....+++ ++.||+|.. ++..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~~ 154 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGIL----QGIGRTKIAMYISIISFWI 154 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC----GCCSTHCCCHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHH----HHCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999 667778
Q ss_pred ccchHHH
Q 012948 431 CGLIWQH 437 (452)
Q Consensus 431 ~~i~~~~ 437 (452)
+.+|+++
T Consensus 155 ~~i~l~y 161 (162)
T PF01554_consen 155 INIPLAY 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHhHHh
Confidence 8888765
No 31
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.65 E-value=6.9e-14 Score=140.35 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhh
Q 012948 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120 (452)
Q Consensus 42 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 120 (452)
++..|+.++.+.|..+..+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++.+..|..++...++|.+
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 5789999999999999999999999999999999 9999999999888888888 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHH
Q 012948 121 MLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIF 199 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 199 (452)
+.++..++...+...++++..++ ..+++|+...+.+++ +..+...++++++..++..+.......+++.||.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 99999999999999999999988 899999998765554 233778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhcccccccchhHHHHHHH
Q 012948 200 FSALPMAIHFGIAYAFVYLTSLGFKGASLAASVS 233 (452)
Q Consensus 200 ~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~ 233 (452)
.+.++.++|++++++++. .+|..|++.++ .+
T Consensus 366 ~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999997 78999999999 44
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=1.4e-12 Score=119.00 Aligned_cols=246 Identities=16% Similarity=0.215 Sum_probs=178.2
Q ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012948 65 IPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFL 143 (452)
Q Consensus 65 ~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (452)
.+++...+++| +|++++|.++....+..+.......|+++.... ..++|+++.++..+.......+.+++...+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788999 999999999999999998844446666666544 234556666676666665544444443332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhHhhccccccc
Q 012948 144 WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGF 223 (452)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~gi 223 (452)
...+...++ +++ ...++....+..+...+.....+.+++.+|.+...........+.+.....+... +.+.
T Consensus 78 ---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 111222333 332 2344556667778889999999999999999999999999888775554444442 4478
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 012948 224 KGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELT 303 (452)
Q Consensus 224 ~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (452)
.+..++..++..+..++.....+++.+.+ + +.+..| ..+.+.|..+.+.......+.+.++++.+. ++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRKLRLS----F----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC----c----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 88888888888887766665433221111 1 123334 789999999999999999999999999843 4899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012948 304 TSLIAMCVNTESVAY-MITYGLSAAASTRVSN 334 (452)
Q Consensus 304 ~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~ 334 (452)
+|.|+++.++..... .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 8999999999999986
No 33
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.46 E-value=3.2e-12 Score=122.46 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 012948 275 PSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKL 354 (452)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~ 354 (452)
|.++.+....+...++..++++++ ++++++|+++.++..+...+..+++++..|.++++.|++|.|++++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888899999999999999987 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 355 SVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
...++++.+++.+++++++.++++.|++..+.+..+++++.+..++.+++....+.+ ++.||++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l----~~~~~~~~~ 144 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFL----RGQGDTKTP 144 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCchHH
Confidence 999999999999999999999998788888899999999999999999999999999 999999998
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.10 E-value=5.4e-07 Score=80.90 Aligned_cols=313 Identities=11% Similarity=0.031 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccch
Q 012948 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLG---QLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKH 118 (452)
Q Consensus 42 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg---~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 118 (452)
...+.++.++-+|+.+++.+..+...+-+.-++|-. .+.+++|+++..+.-++ ..+...+-+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence 346889999999999999999988888888887733 25599999999999998 888887777755554 333
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHH--HHhhHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh
Q 012948 119 YRMLGIYLQASWITSLFFS-IIISFL--WIYTEPIL-ILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIV 194 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-i~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 194 (452)
+++ +....++.....+. .....+ -.+...++ ..++-++++.+.+...+.++.+.-++.++....++++.-.+++
T Consensus 81 rsr--r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 81 RSR--RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 332 22222222222222 121222 23444444 4668899999999999999999999999999999999877777
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhccccccc-chhH---HHHHHHHHHHHH-HHHHHHHhcccccccccCCChhhHHHHHHH
Q 012948 195 IPLIFFSALPMAIHFGIAYAFVYLTSLGF-KGAS---LAASVSLWISML-MLVTYVLCAKKFEHTWEGFSFESFSFILTI 269 (452)
Q Consensus 195 ~~~~~~~~~~~~v~i~l~~~li~~~~~gi-~G~~---~a~~i~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
......++......+++...++.. ++.. ..++ ++...+..+.+. +.+-|+.+-+..........+.+...++++
T Consensus 159 ~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~ 237 (345)
T PF07260_consen 159 WIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRM 237 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHH
Confidence 777666666555555555555532 2221 1121 222222222211 112222122222222222233345679999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhc-CCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-
Q 012948 270 LKLALPSAAMVCLEYWAFEILVFLAGL-MPNS---ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQA- 344 (452)
Q Consensus 270 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~- 344 (452)
+++.+|.+.......+.--+.+.+++| ++.+ +++++...+.+...-..+.-.+-+- +..|..-. .++.++.
T Consensus 238 l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~r-~~~paf~~---~~~~~~~~ 313 (345)
T PF07260_consen 238 LKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTELR-AVYPAFDK---NNPQNKLR 313 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhHH-hhCchhhc---cCcccccc
Confidence 999999999999999999999999998 5532 3456665555554443333222221 12222211 1122222
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH
Q 012948 345 -------KNAMAVTVKLSVLLALVVVLALG 367 (452)
Q Consensus 345 -------~~~~~~~~~~~~~~~~~~~~~~~ 367 (452)
+..+++....++.+++..++.++
T Consensus 314 ~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 314 NCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23666777777777766665553
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.98 E-value=2e-09 Score=105.82 Aligned_cols=204 Identities=12% Similarity=0.105 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLG--QLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 42 ~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
.+.++++++.+.|..+...++.-...+.....|.++ ..+++..++...+.... ..+..|++.+....+++.+|++++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 458999999999999999999999999999999977 57889999999998888 888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
+++|..........+..++..+.. ..+.+.+...|..++|+.+...+..++++...+......+..+..+|.|+.+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999999999888877 7888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012948 199 FFSALPMA-IHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 199 ~~~~~~~~-v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
+.++.... +.+++...+-+..++|..|.|.+...+..+..........
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~ 450 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA 450 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee
Confidence 88877765 5666666666666899999999999996666666555554
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.76 E-value=7.1e-06 Score=82.20 Aligned_cols=370 Identities=13% Similarity=0.001 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHH
Q 012948 50 VFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWAT-VTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127 (452)
Q Consensus 50 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~-~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 127 (452)
+.+.-+++.|++..+.+++.+.++-| ++++.+|..++=..+.. .+...-=.++-.+.++.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45666778888888888887777777 99999998855544433 22144455777776654444322233444444444
Q ss_pred HHHHHHHHHHHHHHHH-H-HhhHHH----HHHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHcCC
Q 012948 128 ASWITSLFFSIIISFL-W-IYTEPI----LILL-HQDPS---ISKQAALYMKYLIPGLVAYGVIQNI----LRFLQTQSI 193 (452)
Q Consensus 128 ~~~~~~~~~~i~~~~~-~-~~~~~i----~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~g~ 193 (452)
....+..++..+++.+ + ....|. ..+. ...++ ..+.....+.+...+.++-.+...+ +..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 4444444444333222 1 111111 1111 11111 1122222333444444444444444 333333334
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhcc-ccccc-----c-hhHHHHHHHHHHHHHHHHHHHHh--ccc---ccccccCCCh-
Q 012948 194 VIPLIFFSALPMAIHFGIAYAFVYL-TSLGF-----K-GASLAASVSLWISMLMLVTYVLC--AKK---FEHTWEGFSF- 260 (452)
Q Consensus 194 ~~~~~~~~~~~~~v~i~l~~~li~~-~~~gi-----~-G~~~a~~i~~~i~~~~~~~~~~~--~~~---~~~~~~~~~~- 260 (452)
.+.-........+++..+....... .+++. . -+.++..+++....+........ ... .....++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 4444444444444444443333211 01111 1 12334444444443322221111 111 1111111111
Q ss_pred --hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 012948 261 --ESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGL--MPNSELTTSLIAMCVNTESVAY-MITYGLSAAASTRVSNE 335 (452)
Q Consensus 261 --~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~ 335 (452)
.....-+++++........++.-.+..+.+.++++. +. +.++-|.|++++++.++.. .+.+-+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011124677888888888888888888888888887 65 4788999999999988876 45677888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012948 336 LGAGNP---------DQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGV 406 (452)
Q Consensus 336 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 406 (452)
...++. ++..+.....++....+++.+...--..++.+.+++.+++-.-..+...++.+++..++.+++++
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765432 44666777777777777777776666777777788765443333468899999999999999999
Q ss_pred hhhhcccccccccccchh
Q 012948 407 LSDADASELMAQGWQEDV 424 (452)
Q Consensus 407 ~~~~l~~~~~~~g~~~~~ 424 (452)
..+.. .+...++..
T Consensus 404 ~EaF~----~s~a~~~~l 417 (549)
T PF04506_consen 404 TEAFV----FSVASESQL 417 (549)
T ss_pred HHHHH----HHhCCHHHH
Confidence 99999 888777666
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=8.7e-05 Score=70.02 Aligned_cols=366 Identities=11% Similarity=-0.001 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhhhccchhhH
Q 012948 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVT-GFAFMIGLSGALETLCGQGFGAKHYRM 121 (452)
Q Consensus 44 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~gl~~a~~~~vs~~~g~~~~~~ 121 (452)
....-.+.+.-.+..|+...+.++..+.++-| ++++.+|..++=..+..-- ...--.++.-|..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34455566666777777777777776666656 9999999887766554421 0233334555544333332 234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 012948 122 LGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPS-ISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 200 (452)
..+..+.+.-+..++.++..-+++-...-. |+. ..+.-..-+.+...+.+.-.+...+.-..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~-----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLGFLSSS-----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhcc-----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 667766666666666655544321111110 110 01111112223333344444444444455555555555555
Q ss_pred HHHHHHHH-HHHHhHhhcc-cccccchhHHHHHHHHHHHHHHHHHHHHhccc-cc-------------ccccC--CChhh
Q 012948 201 SALPMAIH-FGIAYAFVYL-TSLGFKGASLAASVSLWISMLMLVTYVLCAKK-FE-------------HTWEG--FSFES 262 (452)
Q Consensus 201 ~~~~~~v~-i~l~~~li~~-~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~-~~-------------~~~~~--~~~~~ 262 (452)
..+..+++ +..-.+++.+ .++++..-++|.......-.++..+++.+.++ .+ +.-+. ....+
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 55555555 3322223322 24555566666666555555533333333222 00 00000 01122
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q 012948 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPN-SELTTSLIAMCVNTESVAY-MITYGLSAAASTRVSNELGAGN 340 (452)
Q Consensus 263 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~i~~~~~-~~~~~i~~a~~~~~s~~~g~~~ 340 (452)
++..|...+.-....+ -.+....+..+++.... +-.+-|.|.+++++.++.. ++..-+........++....++
T Consensus 239 ~d~~~~~~s~~~Qs~l----KqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFL----KQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred HHHHHHHHHHHHHHHH----HHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 3333333333333333 33333333444332110 1225678999999877665 4567788888888888877666
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccccccc
Q 012948 341 PDQAKN---AMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMA 417 (452)
Q Consensus 341 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 417 (452)
.|+.|+ .....++....+++..+..-...++.+..++++.+-.-..+...++++++..++.+++++..+.. .+
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~----~A 390 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFA----FA 390 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHH----HH
Confidence 555554 45556666666666666656666777888887654333346689999999999999999999999 88
Q ss_pred ccccchh
Q 012948 418 QGWQEDV 424 (452)
Q Consensus 418 ~g~~~~~ 424 (452)
.+..+..
T Consensus 391 ~~t~~qi 397 (530)
T KOG2864|consen 391 VATSRQI 397 (530)
T ss_pred hccHHHH
Confidence 7766655
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.59 E-value=7.5e-06 Score=67.80 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=74.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 012948 168 MKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247 (452)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~ 247 (452)
+++++++.++..+.....+.+++.||+|.....+.++.++|+++++++++ ++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999985 8999999999999999999988888875
Q ss_pred ccc
Q 012948 248 AKK 250 (452)
Q Consensus 248 ~~~ 250 (452)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 543
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.52 E-value=2e-05 Score=79.10 Aligned_cols=202 Identities=10% Similarity=0.105 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh---
Q 012948 46 KNQVVFSLPMILANVFYYAIPLVSVMSAGH---LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY--- 119 (452)
Q Consensus 46 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~--- 119 (452)
++.++.+.....+.+...+.+--|++++.. .+.++-|.|++++++-+++.-.+..-+..+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 677888999999999999999999999998 45889999999999999987888888888888888887755433
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 012948 120 ------RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQS 192 (452)
Q Consensus 120 ------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 192 (452)
++..+.+...+.+...+++++... ...++.++++++++.=....+...++..+...|+.+++.+..++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 346677788888888888888777 7888888887754322223356778899999999999999999999998
Q ss_pred ChhHHHHHH---HHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 193 IVIPLIFFS---ALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 193 ~~~~~~~~~---~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
..+.....+ .+..++.+..+++++.. ++|..|..+|..+......+...++.++.
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876555444 34445666778888875 68999999999999999988888888654
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=0.00048 Score=65.22 Aligned_cols=201 Identities=9% Similarity=0.065 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 46 KNQVVFSLPMILANVFYYAIPLVSVMSAGH---LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 46 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
++..+......-+.+...+.+-=|.++++. ++-++-|.|.+++++-+++.-.+..-+......+.+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 445566666777788888888888888884 56678889999988888877777777888888888887776665554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 123 G---IYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 123 ~---~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
+ .+....+.+...++++++.. ...+++++.+++++.=....+...+++.+...++.+++.+..+++.+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 4 45566677777777777666 7788888888765432222344678999999999999999999999987766544
Q ss_pred H---HHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 199 F---FSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 199 ~---~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
. ...+..+..++++++++. .+|..|..+|.++...+.-+....+.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 234455667888999997 56779999999988888777766666533
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.60 E-value=0.00051 Score=63.05 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQG 113 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~ 113 (452)
.+++..|++++.+.|..++++...+....|+.++++ .|++++|.|+.+.++.... ..+...+.+...|.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 199 FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL 272 (273)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999999999999999999 9999999999999999999 888999999999999875
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.31 E-value=0.15 Score=47.68 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 012948 94 TGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIP 173 (452)
Q Consensus 94 ~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 173 (452)
+...++.|+....++++|...=++|.+++..-+.-...+....+.++..+ +-...++.. ..|=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~s-----i~yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYS-----IVYKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchh-----HHHHHHHHH
Confidence 34666778888899999999888888887776655555444444333321 111122221 112223445
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012948 174 GLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAK 249 (452)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~ 249 (452)
.+...+..-+...++.+.+|.+...+.-.++.++...+...+- +.++.|..++..++..+.......+..|.-
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f 212 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYF 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 5556677778889999999999999999999998888887776 568999999999999888877777775543
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.74 E-value=0.013 Score=53.06 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 012948 47 NQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQG 113 (452)
Q Consensus 47 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~ 113 (452)
+.++.+.|..+.++.......+|.++++. +|++++|.|+.+.++...+...+..++++...|.++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999 99999999999999999882389999999999998873
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.68 E-value=0.16 Score=46.51 Aligned_cols=152 Identities=11% Similarity=0.014 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 012948 263 FSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSE-LTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNP 341 (452)
Q Consensus 263 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~ 341 (452)
.....++.++-+|.++++....++-++.+--+++-.+.+ +.+|.|+++..+.-++..+...+.+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 346778999999999999999999888887777632223 449999999999999999988888776666643 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhh-hccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccccccccc
Q 012948 342 DQAKNAMAVTVKLSVLLALV-VVLALGFGHNI-WAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQG 419 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g 419 (452)
+ -++..........+.... ..+..--++++ +-.++.-|+++.+.+...+.++.+..+++++....++++ .--.
T Consensus 82 s-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGIL----ik~r 156 (345)
T PF07260_consen 82 S-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGIL----IKHR 156 (345)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----hhcc
Confidence 2 222222222222222111 11222223333 445567788999999999999999999999999999999 6445
Q ss_pred ccchh
Q 012948 420 WQEDV 424 (452)
Q Consensus 420 ~~~~~ 424 (452)
+++..
T Consensus 157 ~s~iV 161 (345)
T PF07260_consen 157 HSWIV 161 (345)
T ss_pred ceeEe
Confidence 55444
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=76.38 E-value=74 Score=30.49 Aligned_cols=117 Identities=12% Similarity=0.178 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
++.....++.+.-..-+-.+.++. .+.++.+..+++-++-. .+.+++-..+.-.......+-...--.++.+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344445555555444455555555 78888898988876533 2334455555544444434444444556777777
Q ss_pred HHHHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHH
Q 012948 199 FFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVT 243 (452)
Q Consensus 199 ~~~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~ 243 (452)
..+..-.+.|-++++++... +-|..|+ +..++.++..++.+.
T Consensus 396 ~~t~~fli~N~ilT~i~l~l-gp~~~g~--gff~a~fl~vlv~~~ 437 (467)
T COG4267 396 ELTALFLISNGILTFIFLEL-GPGYYGV--GFFLASFLYVLVAFK 437 (467)
T ss_pred hhhhHHHHHhHHHHHHHHHh-Cccceeh--HHHHHHHHHHHHHHh
Confidence 77777777888888887752 2233333 334444444443333
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=55.82 E-value=76 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 012948 324 LSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALV 361 (452)
Q Consensus 324 i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (452)
++-.....+.+.+.+||++++++.-+++.+++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44445567778888999999999999988888654444
No 47
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=52.13 E-value=22 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhHHHhhhhhcccccccccccchh
Q 012948 391 TPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424 (452)
Q Consensus 391 l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 424 (452)
+++++++.++.++....+..+ ++.||+|..
T Consensus 2 l~il~~~~~~~~l~~~~~~il----~~~~k~~~~ 31 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSIL----QAMGKTKWP 31 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCchHH
Confidence 678899999999999999999 999999999
No 48
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=51.24 E-value=2.5e+02 Score=27.61 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012948 259 SFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGA 338 (452)
Q Consensus 259 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~ 338 (452)
.+.+.++.++.++-++|..+....- ...+..+... +.|.+++++..-+.--... +.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t--~teaa~~~~~~~l~i~~~~----------------~~~ 258 (416)
T PF06808_consen 202 PRASLKERWRAFKRAIPALLIPVII-----LGGIYLGIFT--PTEAAAVAVVYALVIGLFV----------------YRR 258 (416)
T ss_pred ccchHHHHHHHHHhcchHHHHHHHH-----HHHhhhcccc--hhhhhhhhHHHHHHHHHhh----------------hcc
Confidence 3444566667777777655443322 1223344443 6677766654432211110 445
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Q 012948 339 GNPDQAKNAMAVTVKLSVLLALVVVL 364 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (452)
.+.++..+..+.+.+.+..+...++.
T Consensus 259 ~~~~~l~~~l~~~~~~~~~i~~iia~ 284 (416)
T PF06808_consen 259 LSWKDLWRALVETARTTGMILFIIAA 284 (416)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776655555443
No 49
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=49.83 E-value=1.5e+02 Score=26.11 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 012948 117 KHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLH 155 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 155 (452)
+++++..+.+..++...+++-+++++++....++.++++
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 455555666666665555555555555666667766665
No 50
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=46.06 E-value=3e+02 Score=26.97 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc--cC-hHHHHHHHHHHHHHHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIP--LVSVMSAGH--LG-QLELAGATLANSWATV 93 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~--~i~~~~i~~--lg-~~~~~~~~~~~~i~~~ 93 (452)
+..|.++++.+|+.+..+.+.+.+ ..++..--. .. .+.+..|+..+++-.+
T Consensus 240 ~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVF 295 (402)
T PF02487_consen 240 KRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVF 295 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 367888889999999999887653 333333222 22 5666777776665433
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=41.38 E-value=3.4e+02 Score=26.32 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH-HcCCC
Q 012948 118 HYRMLGIYLQASWITSLFFSIIISFL-WIYTEPILI-LLHQD 157 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~-~~~~~ 157 (452)
++++.+++.+.+...+.+...+..++ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55789999999999999999888776 677777765 44444
No 52
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=37.10 E-value=5e+02 Score=27.02 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=11.9
Q ss_pred HHHhhhhhhccccCCcH
Q 012948 365 ALGFGHNIWAGFFSNSP 381 (452)
Q Consensus 365 ~~~~~~~~i~~lf~~~~ 381 (452)
...+.+..+..+|+.|.
T Consensus 329 ~~~l~p~~~~~vf~~d~ 345 (599)
T PF06609_consen 329 VNILWPQQVVNVFGSDP 345 (599)
T ss_pred HHHHHHHHHhhhccCCC
Confidence 34567777778888775
No 53
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=35.57 E-value=3.4e+02 Score=24.60 Aligned_cols=78 Identities=8% Similarity=-0.120 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHH
Q 012948 314 ESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPL 393 (452)
Q Consensus 314 ~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i 393 (452)
+.+...+...+..++....-+--..+..+.+++..-.+..++...++.-++..+.+++ ..++.++.+.+..+....++
T Consensus 84 W~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 84 WNILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHH
Confidence 3333333444444444444332223445666777777777777777777777788887 56666555444444443333
No 54
>PTZ00206 amino acid transporter; Provisional
Probab=33.22 E-value=5.1e+02 Score=25.93 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=8.9
Q ss_pred HHHHhhhccchhhHHHH
Q 012948 108 TLCGQGFGAKHYRMLGI 124 (452)
Q Consensus 108 ~~vs~~~g~~~~~~~~~ 124 (452)
...++..+.++++++.+
T Consensus 112 ~~~~~~~~~~sY~~la~ 128 (467)
T PTZ00206 112 GVAADKTNIRTYEGVAR 128 (467)
T ss_pred HHHhccCCCCCHHHHHH
Confidence 33445445566666544
No 55
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=32.31 E-value=1.6e+02 Score=24.81 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012948 223 FKGASLAASVSLWISMLMLVTYVLCAK 249 (452)
Q Consensus 223 i~G~~~a~~i~~~i~~~~~~~~~~~~~ 249 (452)
..|-..++.+++++.+++...|.++-.
T Consensus 136 ~s~s~~~~ti~yIiL~iLf~~Ya~nl~ 162 (189)
T PF05313_consen 136 VSGSSGAYTISYIILAILFCIYAFNLT 162 (189)
T ss_pred hhHhHHHHHHHHHHHHHHHHHheeecc
Confidence 346667788888888887777765433
No 56
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=31.75 E-value=4.5e+02 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012948 223 FKGASLAASVSLWISMLMLVTYVLCAKK 250 (452)
Q Consensus 223 i~G~~~a~~i~~~i~~~~~~~~~~~~~~ 250 (452)
-.|++++++++-.+..-++..+++--++
T Consensus 304 ~s~aA~a~vigpLvEVpvml~lV~v~~~ 331 (342)
T COG0798 304 TSGAALATVVGPLVEVPVMLGLVKVALR 331 (342)
T ss_pred cccchhhhhccchhhHHHHHHHHHHHHH
Confidence 5789999999988888777777654333
No 57
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=28.63 E-value=4.5e+02 Score=25.40 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHHHHHHHHHH
Q 012948 52 SLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASW 130 (452)
Q Consensus 52 ~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~ 130 (452)
+.-++.+++++.+.+.+-+.+.-+ +|..+++.-+.+.++..++ + .-...+.+++-.+|++.......+
T Consensus 60 g~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilv---F--------aEVlPKt~Aa~~perva~~~s~~l 128 (423)
T COG4536 60 GTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILV---F--------AEVLPKTIAALYPERVALPSSFIL 128 (423)
T ss_pred eeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH---H--------HHhcchHHhhhChhhhhhhhhHHH
Confidence 455666778887777776666666 8877765544444333322 1 123355566677888777666666
Q ss_pred HHHHHHHHHHHHH-HHhhHHHHHHcCCC
Q 012948 131 ITSLFFSIIISFL-WIYTEPILILLHQD 157 (452)
Q Consensus 131 ~~~~~~~i~~~~~-~~~~~~i~~~~~~~ 157 (452)
....-+.-++..+ -.+..-+.++++.+
T Consensus 129 ~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 129 AILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 6666666666655 66777788888644
No 58
>PF14184 YrvL: Regulatory protein YrvL
Probab=27.72 E-value=3.2e+02 Score=21.91 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 012948 129 SWITSLFFSIIISFLWIYTEPILILLHQDPS-ISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAI 207 (452)
Q Consensus 129 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v 207 (452)
.....+...++.+...+....+.+++|.+-| ......-.+.....+.++..+...+...+.-.+-+|.... .....+
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~i 84 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFII 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHH
Confidence 3334444444444445556667788875532 2222222333445677777777777666665533443332 334456
Q ss_pred HHHHHhHhhcccccccchhHH
Q 012948 208 HFGIAYAFVYLTSLGFKGASL 228 (452)
Q Consensus 208 ~i~l~~~li~~~~~gi~G~~~ 228 (452)
....++..++..+.=+.+..+
T Consensus 85 d~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 85 DFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHhcceee
Confidence 666666666543332334333
No 59
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=26.70 E-value=2.6e+02 Score=20.55 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHH
Q 012948 54 PMILANVFYYAIPLVSVMSAGH--LGQLELAGATLANSWATVT 94 (452)
Q Consensus 54 p~~~~~~~~~~~~~i~~~~i~~--lg~~~~~~~~~~~~i~~~~ 94 (452)
|.++...+--+..++..++.+. ..-.++|..+++--+..++
T Consensus 35 p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~~ 77 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLMI 77 (87)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHHH
Confidence 5555556666666666666655 4567788777766555544
No 60
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=26.38 E-value=6.5e+02 Score=24.97 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012948 273 ALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTV 352 (452)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~ 352 (452)
+-|.+++.+.--++-..-.++.+..-.++.+++- +.-....|++.++...++..+|+.++.+-+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~---------laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALAL---------LAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhhh---------hhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 5567676666655555556666665433333333 3345567999999999999999999888877766555
Q ss_pred HHHH
Q 012948 353 KLSV 356 (452)
Q Consensus 353 ~~~~ 356 (452)
...+
T Consensus 450 Afiv 453 (510)
T KOG2468|consen 450 AFIV 453 (510)
T ss_pred HHHH
Confidence 4444
No 61
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=23.92 E-value=7.6e+02 Score=25.20 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012948 220 SLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPN 299 (452)
Q Consensus 220 ~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 299 (452)
+++...-+.+..+-+.+..++.+..++...+.+....... ..+...+++..+..++ .+.. .+|+
T Consensus 52 em~Wk~Ya~alL~fN~~~~l~~~~ll~~Q~~LPlNP~~~~-----------~~s~dlAfNTAiSFvT---NTNw-Q~Ys- 115 (552)
T PF03814_consen 52 EMSWKQYALALLAFNLIGFLLLYLLLRLQGWLPLNPQGFP-----------GMSPDLAFNTAISFVT---NTNW-QHYS- 115 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCC-----------CCCcchhhhhhhhhhc---cCcc-cccC-
Confidence 4455556666666666666666666654444333221111 1122233333332222 2222 3344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012948 300 SELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLA 365 (452)
Q Consensus 300 ~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (452)
||..++.++-..-+ ..-.+.+.+-+-++...+-|-+..++.+.+-+......|..+-+.+|++++
T Consensus 116 GEstlSylsQm~gL-tvqnFvSAAtGiAv~~AliRg~~~~~~~~iGNFwvDl~R~~l~vLLPlS~v 180 (552)
T PF03814_consen 116 GESTLSYLSQMAGL-TVQNFVSAATGIAVAIALIRGFARKETKTIGNFWVDLVRSTLRVLLPLSFV 180 (552)
T ss_pred CcchHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 47666655322221 222334455666666666666665554444444444444444444444433
No 62
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=23.74 E-value=4e+02 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 012948 224 KGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 224 ~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
....+|..++..++-..-.+.+.
T Consensus 68 ~ri~~aS~~a~lisq~~d~~if~ 90 (145)
T PF02592_consen 68 PRIALASLIAFLISQLLDVYIFS 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555553
No 63
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=23.71 E-value=7.6e+02 Score=24.82 Aligned_cols=54 Identities=7% Similarity=-0.105 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 012948 59 NVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQG 113 (452)
Q Consensus 59 ~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~ 113 (452)
..+.++++..|+..+...+++.-.++++...-..++ +....-.-....|+.+..
T Consensus 38 l~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sPl~gyL 91 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASPLFGYL 91 (493)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHHHHHHH
Confidence 345566778888888876676666676666555554 222222223344555554
No 64
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=20.77 E-value=3.3e+02 Score=19.63 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=24.0
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 012948 107 ETLCGQGFGAKHYRMLGIYLQASWITSLFFSII 139 (452)
Q Consensus 107 ~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 139 (452)
...+-+.+.++|++++++.-+..-.++.+..++
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 356667777899999988888887776554433
No 65
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=20.63 E-value=4.6e+02 Score=21.22 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=22.0
Q ss_pred HhHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012948 104 GALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISF 142 (452)
Q Consensus 104 ~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (452)
--..-.++|.+| ++++++....++...++..+...+
T Consensus 11 fl~~Dii~E~yG---~~~a~~~i~~g~~~~~~~~~~~~~ 46 (145)
T PF02592_consen 11 FLITDIISEVYG---KKAARKAIWIGFLANLLFSLLIWI 46 (145)
T ss_pred HHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788887 445667766666666666444433
Done!