Query 012948
Match_columns 452
No_of_seqs 257 out of 2090
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 19:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.9E-44 9.9E-49 357.0 30.2 393 43-442 9-411 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.8E-21 6.3E-26 192.7 18.4 208 40-248 232-446 (460)
3 3o7q_A L-fucose-proton symport 90.1 12 0.00042 35.0 24.5 45 46-90 26-72 (438)
4 4hkr_A Calcium release-activat 23.9 3.1E+02 0.011 22.7 13.8 80 77-157 56-143 (214)
5 1pw4_A Glycerol-3-phosphate tr 23.6 4.2E+02 0.014 24.1 27.1 40 45-84 27-67 (451)
6 1pw4_A Glycerol-3-phosphate tr 23.1 4.3E+02 0.015 24.0 19.2 31 47-77 253-284 (451)
7 4aps_A DI-OR tripeptide H+ sym 20.5 5.1E+02 0.018 24.0 10.6 244 10-264 199-491 (491)
8 2jwa_A Receptor tyrosine-prote 20.3 1.1E+02 0.0038 18.3 3.1 8 241-248 31-38 (44)
9 2k1k_A Ephrin type-A receptor 17.2 1.3E+02 0.0044 17.3 2.8 26 223-248 13-38 (38)
10 4ev6_A Magnesium transport pro 12.1 3.3E+02 0.011 24.4 5.8 64 188-251 270-339 (339)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.9e-44 Score=356.99 Aligned_cols=393 Identities=21% Similarity=0.321 Sum_probs=363.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948 43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML 122 (452)
Q Consensus 43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 122 (452)
+..|++++.++|..++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++.+..+.+++++|++|+++.
T Consensus 9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 5889999999999999999999999999999999999999999999998887 888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 012948 123 GIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSA 202 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 202 (452)
++.++.++.+.++++++.+++..+.++++.+++.+++..+.+..|+++..++.++..+.....+.+|+.||++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999998776677888998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcc----cccccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccCCChhhHHHHHHHHHHHhHH
Q 012948 203 LPMAIHFGIAYAFVYL----TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-T-WEGFSFESFSFILTILKLALPS 276 (452)
Q Consensus 203 ~~~~v~i~l~~~li~~----~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~p~ 276 (452)
++.++|+++++++++. +++|+.|+++|+.+++.+..++..++.+++++.++ + ++++.+.+++.+|++++.++|.
T Consensus 168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 247 (460)
T 3mkt_A 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247 (460)
T ss_dssp HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHH
Confidence 9999999999999975 37999999999999999999988888876554322 1 1233344567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 012948 277 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSV 356 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 356 (452)
.+.+....+...+++.+++++| ++++++|++++++.++..++..+++++..|.+++++|++|.+++++..+++.++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~ 325 (460)
T 3mkt_A 248 AAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGL 325 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999996 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhcc
Q 012948 357 LLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLCG 432 (452)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~~ 432 (452)
.++++.+++++++++++.++|++|+++++.+..++++++++.++++++.+..+++ ++.||+|.+ +++.|++.
T Consensus 326 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 326 ATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL----RGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----GGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998889999999999999999999999999999 999999999 66677888
Q ss_pred chHHHHHHHH
Q 012948 433 LIWQHSISLA 442 (452)
Q Consensus 433 i~~~~~l~~~ 442 (452)
+|+.+.+.+.
T Consensus 402 i~l~~~l~~~ 411 (460)
T 3mkt_A 402 LPTGYILGMT 411 (460)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8888887765
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.87 E-value=1.8e-21 Score=192.71 Aligned_cols=208 Identities=17% Similarity=0.192 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchh
Q 012948 40 LDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHY 119 (452)
Q Consensus 40 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 119 (452)
++++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5566889999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHH
Q 012948 120 RMLGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLI 198 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 198 (452)
|++++..+.+..+...++++.+++ .++++++..++..|++..+.+..++++.+++.++.++..+..+.+++.||+|.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999999988 8999999999988888888999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhHhhcc----cc-cccchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 199 FFSALPM-AIHFGIAYAFVYL----TS-LGFKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 199 ~~~~~~~-~v~i~l~~~li~~----~~-~gi~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
+.++++. +++++++++++.. ++ +|+.|+++|+.+++.+..++..+.++|+
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7999999999974 45 9999999999999999988777666543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=90.15 E-value=12 Score=35.02 Aligned_cols=45 Identities=7% Similarity=-0.119 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHH
Q 012948 46 KNQVVFSLPMILANVFYYAIPLVSVMSAGHLG--QLELAGATLANSW 90 (452)
Q Consensus 46 ~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~~~~~i 90 (452)
+.+.....-..+..+...........+...+| +.+.+.......+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 72 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYF 72 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444444444444444455555445555554 5555544433333
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=23.91 E-value=3.1e+02 Score=22.67 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--------hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012948 77 GQLELAGATLANSWATVTGFAFMIGLSGALETLCGQG--------FGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTE 148 (452)
Q Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (452)
.+.-+.+|+....+.-.. ..+..-+++-..|.+-.. ..+.-.+|.+.+.-..-.++.++|+++.++-+..-
T Consensus 56 p~~LLi~fav~Ttllv~v-ml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAV-HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777776655 555555665555554332 12334567788888888888888877776622223
Q ss_pred HHHHHcCCC
Q 012948 149 PILILLHQD 157 (452)
Q Consensus 149 ~i~~~~~~~ 157 (452)
-+++++..+
T Consensus 135 ~WVKF~~~~ 143 (214)
T 4hkr_A 135 CWVKFYDLS 143 (214)
T ss_dssp HHHHHTTTC
T ss_pred heEEeecCC
Confidence 344555444
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.55 E-value=4.2e+02 Score=24.11 Aligned_cols=40 Identities=8% Similarity=-0.115 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHH
Q 012948 45 AKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGA 84 (452)
Q Consensus 45 ~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~ 84 (452)
++.+.....-..+..............+..+ .++.+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ 67 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFA 67 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHH
Confidence 3344444444444444433334443443333 334444443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.07 E-value=4.3e+02 Score=24.04 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC
Q 012948 47 NQVVFSLPMILANVFYYAIPLVSVMSAGH-LG 77 (452)
Q Consensus 47 ~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg 77 (452)
.++...+...+..............++.. +|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 284 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 284 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444444333333444443 44
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=20.54 E-value=5.1e+02 Score=23.98 Aligned_cols=244 Identities=9% Similarity=-0.075 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCCcccchhhhhh---------------------------------------------hhhhcCCHHH
Q 012948 10 TTSPLLEAGGDDDHGEEEATSSRRR---------------------------------------------WWKRVLDLEE 44 (452)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 44 (452)
+..+..+...+++..+++.....+. +.++..+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (491)
T 4aps_A 199 KTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE 278 (491)
T ss_dssp TTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhh
Q 012948 45 AKN---QVVFSLPMILANVFYYAIPLVSVMSAGH-LGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120 (452)
Q Consensus 45 ~~~---i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 120 (452)
.++ .........+..............+..+ .+.+. ......... ......++......+.+.+++++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~r~~~r~~- 351 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSL-NPLFIMLYTPFFAWLWTAWKKNQP- 351 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTH-HHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhcc-chHHHHHHHHHHHHHHHHHhccCC-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 012948 121 MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF 200 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 200 (452)
.....+.....+..+.............--...+.........+.-...+..............-...+.+.....
T Consensus 352 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 352 ----SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHH
Q 012948 201 SALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFS 264 (452)
Q Consensus 201 ~~~~~~v~i~l~~~li~~~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (452)
+....+-..+...+.-...+.+.....+.......+..++.+...++.++..++.++.+....+
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGVEGSENLYFQ 491 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.35 E-value=1.1e+02 Score=18.32 Aligned_cols=8 Identities=0% Similarity=-0.151 Sum_probs=3.4
Q ss_pred HHHHHHhc
Q 012948 241 LVTYVLCA 248 (452)
Q Consensus 241 ~~~~~~~~ 248 (452)
...|++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34444433
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=17.17 E-value=1.3e+02 Score=17.33 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Q 012948 223 FKGASLAASVSLWISMLMLVTYVLCA 248 (452)
Q Consensus 223 i~G~~~a~~i~~~i~~~~~~~~~~~~ 248 (452)
+.|+.++.+++-.+...+.+++.+|+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeecC
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=12.09 E-value=3.3e+02 Score=24.41 Aligned_cols=64 Identities=5% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhHhhcc------cccccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 012948 188 LQTQSIVIPLIFFSALPMAIHFGIAYAFVYL------TSLGFKGASLAASVSLWISMLMLVTYVLCAKKF 251 (452)
Q Consensus 188 l~~~g~~~~~~~~~~~~~~v~i~l~~~li~~------~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~ 251 (452)
..+.+..+..-..++++.++-.+-.+.-+++ |..+-....+......++.+++.+++++|++|.
T Consensus 270 ~is~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 270 LENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Done!