Query 012948
Match_columns 452
No_of_seqs 257 out of 2090
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 19:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 75.0 25 0.0018 30.4 19.7 27 220-246 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 47.3 73 0.0053 26.3 15.6 26 220-245 375-400 (417)
3 d1nkzb_ f.3.1.1 (B:) Light-har 9.5 1.5E+02 0.011 15.8 4.6 34 340-373 7-40 (41)
4 d1lghb_ f.3.1.1 (B:) Light-har 8.8 1.4E+02 0.01 16.4 2.6 33 340-372 10-42 (43)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 8.6 2.3E+02 0.017 20.9 5.2 36 44-79 129-165 (203)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 7.1 5.6E+02 0.04 20.7 25.2 18 323-340 299-316 (447)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 3.6E+02 0.026 17.3 7.9 22 265-286 69-90 (100)
8 d1m56d_ f.23.8.1 (D:) Bacteria 5.9 2.4E+02 0.017 15.2 5.1 34 336-369 4-37 (42)
9 d1qled_ f.23.8.1 (D:) Bacteria 4.9 2.9E+02 0.021 15.0 5.1 34 336-369 5-38 (43)
10 d1ijdb_ f.3.1.1 (B:) Light-har 4.5 2.9E+02 0.021 14.5 4.3 32 340-371 8-39 (40)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=74.99 E-value=25 Score=30.40 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=13.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH
Q 012948 220 SLGFKGASLAASVSLWISMLMLVTYVL 246 (452)
Q Consensus 220 ~~gi~G~~~a~~i~~~i~~~~~~~~~~ 246 (452)
+.|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555555555555554444443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=47.26 E-value=73 Score=26.31 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=10.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHH
Q 012948 220 SLGFKGASLAASVSLWISMLMLVTYV 245 (452)
Q Consensus 220 ~~gi~G~~~a~~i~~~i~~~~~~~~~ 245 (452)
+.|.....+...+...+..++..+..
T Consensus 375 ~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 375 SIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34544444333333333333333333
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.52 E-value=1.5e+02 Score=15.83 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012948 340 NPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIW 373 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 373 (452)
+.+++.+....+.+....+.++.=++.....||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888899999998888888777777776664
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=8.78 E-value=1.4e+02 Score=16.37 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012948 340 NPDQAKNAMAVTVKLSVLLALVVVLALGFGHNI 372 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
+.++..+.+.+++.....+.+..=++.+.-.|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777776666666665554
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=8.57 E-value=2.3e+02 Score=20.89 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChH
Q 012948 44 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGH-LGQL 79 (452)
Q Consensus 44 ~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~ 79 (452)
.+|-++-.+.|..+..........+....+.. .|..
T Consensus 129 ~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 129 VRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666677777666666666665555554 5543
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.10 E-value=5.6e+02 Score=20.66 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 012948 323 GLSAAASTRVSNELGAGN 340 (452)
Q Consensus 323 ~i~~a~~~~~s~~~g~~~ 340 (452)
.++......+++..+++.
T Consensus 299 ~~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp HHHHHHHHHHHHHTSTTC
T ss_pred hhhhhhhhhhhhhccccc
Confidence 344444555555555443
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.94 E-value=3.6e+02 Score=17.31 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 012948 265 FILTILKLALPSAAMVCLEYWA 286 (452)
Q Consensus 265 ~~~~~l~~~~p~~~~~~~~~~~ 286 (452)
..-|+...-+|..+-..+..-+
T Consensus 69 ~~LEiiWTviP~lILi~l~~pS 90 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888887765554443
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.92 E-value=2.4e+02 Score=15.19 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012948 336 LGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFG 369 (452)
Q Consensus 336 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (452)
.|+-|.+.-.|.+.-.++++...++.+.++++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777666665555544443
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.94 E-value=2.9e+02 Score=14.96 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=20.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012948 336 LGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFG 369 (452)
Q Consensus 336 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (452)
.|+-|.+.-.|.+.-.++++...++.+.++++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777666666666655555444443
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.46 E-value=2.9e+02 Score=14.48 Aligned_cols=32 Identities=3% Similarity=-0.011 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012948 340 NPDQAKNAMAVTVKLSVLLALVVVLALGFGHN 371 (452)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (452)
+.+++.+....+.+....+.++.=++.....|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45778888888888888777776665555444
Done!