Query 012949
Match_columns 452
No_of_seqs 166 out of 1165
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02746 hydroxymethylglutaryl 100.0 3.4E-75 7.3E-80 591.7 36.6 326 90-441 3-335 (347)
2 PRK05692 hydroxymethylglutaryl 100.0 1.7E-70 3.7E-75 546.9 37.2 287 123-435 1-287 (287)
3 KOG2368 Hydroxymethylglutaryl- 100.0 3.7E-68 7.9E-73 499.4 26.8 305 112-442 4-308 (316)
4 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 1.2E-66 2.6E-71 516.2 34.4 274 129-428 1-274 (274)
5 PRK11858 aksA trans-homoaconit 100.0 2.7E-64 5.9E-69 520.0 33.9 284 124-452 2-288 (378)
6 TIGR02660 nifV_homocitr homoci 100.0 1.4E-63 3E-68 512.7 33.8 282 126-452 1-285 (365)
7 PRK00915 2-isopropylmalate syn 100.0 2.4E-63 5.2E-68 530.5 34.4 288 123-452 1-299 (513)
8 PLN03228 methylthioalkylmalate 100.0 2.4E-63 5.1E-68 525.7 33.0 293 124-452 82-391 (503)
9 TIGR02090 LEU1_arch isopropylm 100.0 5.2E-63 1.1E-67 508.0 33.3 282 127-452 1-284 (363)
10 TIGR00973 leuA_bact 2-isopropy 100.0 1.4E-62 3E-67 522.1 33.8 285 126-452 1-296 (494)
11 PRK09389 (R)-citramalate synth 100.0 2E-62 4.4E-67 519.9 33.6 283 126-452 2-286 (488)
12 PLN02321 2-isopropylmalate syn 100.0 3.4E-62 7.3E-67 527.6 33.5 292 124-452 84-392 (632)
13 COG0119 LeuA Isopropylmalate/h 100.0 4.9E-62 1.1E-66 505.2 31.8 285 125-452 1-293 (409)
14 cd07945 DRE_TIM_CMS Leptospira 100.0 2.5E-61 5.4E-66 479.5 30.0 274 130-441 1-280 (280)
15 PRK12344 putative alpha-isopro 100.0 6.7E-61 1.5E-65 512.1 35.4 293 123-452 2-303 (524)
16 TIGR00970 leuA_yeast 2-isoprop 100.0 6.1E-61 1.3E-65 515.7 33.3 294 123-452 23-336 (564)
17 TIGR00977 LeuA_rel 2-isopropyl 100.0 1.1E-60 2.3E-65 510.1 34.6 295 126-452 1-300 (526)
18 PRK03739 2-isopropylmalate syn 100.0 1.4E-60 3.1E-65 511.7 34.8 292 123-452 27-337 (552)
19 PRK14847 hypothetical protein; 100.0 6.6E-59 1.4E-63 468.2 32.6 294 112-444 21-331 (333)
20 cd07939 DRE_TIM_NifV Streptomy 100.0 4.1E-56 8.9E-61 437.2 31.2 255 129-428 1-258 (259)
21 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 1.2E-55 2.5E-60 436.0 30.0 256 129-428 1-268 (268)
22 KOG2367 Alpha-isopropylmalate 100.0 1.7E-55 3.7E-60 448.6 29.0 293 122-452 53-353 (560)
23 cd07948 DRE_TIM_HCS Saccharomy 100.0 8.6E-55 1.9E-59 428.9 30.9 259 127-428 1-262 (262)
24 cd07942 DRE_TIM_LeuA Mycobacte 100.0 1E-54 2.2E-59 432.3 29.7 263 128-428 3-284 (284)
25 cd03174 DRE_TIM_metallolyase D 100.0 1.4E-53 3.1E-58 416.7 32.8 264 130-428 1-265 (265)
26 cd07947 DRE_TIM_Re_CS Clostrid 100.0 3E-53 6.6E-58 421.1 28.8 256 127-428 1-279 (279)
27 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 1.5E-52 3.2E-57 415.4 32.0 267 129-428 1-273 (273)
28 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 4.8E-52 1E-56 409.3 32.3 254 127-428 1-260 (263)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 5E-52 1.1E-56 412.0 29.6 263 129-430 1-269 (275)
30 PRK12330 oxaloacetate decarbox 100.0 3.1E-51 6.8E-56 431.9 32.6 292 123-452 1-311 (499)
31 PRK12331 oxaloacetate decarbox 100.0 6.1E-51 1.3E-55 427.3 32.4 286 125-449 2-298 (448)
32 PRK14041 oxaloacetate decarbox 100.0 2.5E-50 5.5E-55 423.6 32.1 285 126-449 2-294 (467)
33 PRK08195 4-hyroxy-2-oxovalerat 100.0 1.9E-49 4.2E-54 403.6 34.1 256 125-430 2-266 (337)
34 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 1.5E-49 3.3E-54 392.5 30.2 252 129-430 1-260 (266)
35 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 3.6E-49 7.8E-54 400.9 33.6 257 125-430 1-265 (333)
36 PRK09282 pyruvate carboxylase 100.0 5E-49 1.1E-53 425.3 32.5 286 125-449 2-295 (592)
37 PRK14040 oxaloacetate decarbox 100.0 1.1E-48 2.4E-53 422.0 32.8 268 123-430 1-275 (593)
38 TIGR01108 oadA oxaloacetate de 100.0 2.7E-48 5.8E-53 418.7 30.9 264 129-431 1-270 (582)
39 PRK12581 oxaloacetate decarbox 100.0 5.8E-48 1.2E-52 404.0 31.5 288 123-449 9-307 (468)
40 PF00682 HMGL-like: HMGL-like 100.0 1.3E-48 2.9E-53 377.6 23.4 236 135-409 1-237 (237)
41 PRK14042 pyruvate carboxylase 100.0 7.2E-47 1.6E-51 406.7 30.5 286 125-449 2-295 (596)
42 PRK12999 pyruvate carboxylase; 100.0 1.2E-44 2.6E-49 415.1 32.6 292 125-449 531-832 (1146)
43 COG5016 Pyruvate/oxaloacetate 100.0 4.1E-43 8.8E-48 353.3 19.2 267 125-430 4-276 (472)
44 TIGR02146 LysS_fung_arch homoc 100.0 2.2E-41 4.7E-46 343.4 31.6 281 129-452 1-282 (344)
45 TIGR01235 pyruv_carbox pyruvat 100.0 4.5E-42 9.7E-47 392.6 28.8 305 109-449 506-830 (1143)
46 COG1038 PycA Pyruvate carboxyl 100.0 2.1E-30 4.5E-35 277.0 16.6 290 125-449 534-835 (1149)
47 KOG0369 Pyruvate carboxylase [ 99.9 4.6E-26 1E-30 239.8 17.2 293 108-435 534-844 (1176)
48 TIGR02146 LysS_fung_arch homoc 98.6 9.7E-15 2.1E-19 148.4 -41.9 140 304-452 111-268 (344)
49 PRK07028 bifunctional hexulose 98.2 4.3E-05 9.4E-10 80.9 15.9 175 143-377 11-188 (430)
50 TIGR03699 mena_SCO4550 menaqui 98.2 0.00032 6.9E-09 71.9 21.4 237 144-412 71-330 (340)
51 TIGR00423 radical SAM domain p 98.1 0.00065 1.4E-08 68.8 22.8 240 144-411 35-298 (309)
52 PRK07094 biotin synthase; Prov 98.1 0.00086 1.9E-08 68.0 22.2 201 144-383 69-284 (323)
53 TIGR03551 F420_cofH 7,8-dideme 98.0 0.00061 1.3E-08 70.1 20.5 236 144-412 69-335 (343)
54 TIGR00262 trpA tryptophan synt 98.0 0.00056 1.2E-08 67.8 19.5 183 144-376 20-224 (256)
55 PLN02389 biotin synthase 98.0 0.0035 7.7E-08 65.6 26.1 224 144-413 115-355 (379)
56 CHL00200 trpA tryptophan synth 98.0 0.0006 1.3E-08 67.9 18.9 185 144-376 25-228 (263)
57 TIGR03700 mena_SCO4494 putativ 97.9 0.0021 4.6E-08 66.4 21.8 243 144-412 78-341 (351)
58 PRK07360 FO synthase subunit 2 97.9 0.0038 8.2E-08 65.1 22.9 231 144-412 90-357 (371)
59 PLN02591 tryptophan synthase 97.8 0.0024 5.1E-08 63.2 19.5 186 144-376 12-215 (250)
60 PRK15108 biotin synthase; Prov 97.8 0.018 3.9E-07 59.6 26.6 221 144-412 75-312 (345)
61 TIGR00433 bioB biotin syntheta 97.7 0.022 4.7E-07 56.8 25.0 222 144-409 61-295 (296)
62 PRK08445 hypothetical protein; 97.7 0.012 2.6E-07 60.9 23.6 236 144-411 72-334 (348)
63 PRK13125 trpA tryptophan synth 97.7 0.0071 1.5E-07 59.4 20.9 184 144-376 14-211 (244)
64 PRK06256 biotin synthase; Vali 97.7 0.0099 2.2E-07 60.7 22.5 221 144-412 90-324 (336)
65 PRK09240 thiH thiamine biosynt 97.7 0.0065 1.4E-07 63.4 20.9 221 143-412 102-359 (371)
66 TIGR03128 RuMP_HxlA 3-hexulose 97.6 0.0022 4.8E-08 60.7 15.6 172 144-378 8-185 (206)
67 PRK08444 hypothetical protein; 97.6 0.019 4E-07 59.7 23.3 239 144-411 79-339 (353)
68 PRK13111 trpA tryptophan synth 97.5 0.01 2.2E-07 59.0 18.6 162 144-351 22-204 (258)
69 PRK09196 fructose-1,6-bisphosp 97.4 0.012 2.7E-07 60.7 19.1 212 136-378 15-276 (347)
70 PRK07315 fructose-bisphosphate 97.4 0.014 3.1E-07 59.0 19.3 195 144-379 25-232 (293)
71 TIGR01496 DHPS dihydropteroate 97.4 0.018 4E-07 57.1 19.8 197 129-376 5-239 (257)
72 PRK05927 hypothetical protein; 97.4 0.026 5.6E-07 58.6 21.2 236 144-411 75-335 (350)
73 PRK07084 fructose-bisphosphate 97.4 0.019 4.1E-07 58.8 19.7 200 144-378 31-267 (321)
74 TIGR02351 thiH thiazole biosyn 97.4 0.016 3.4E-07 60.4 19.4 220 144-412 102-358 (366)
75 PRK06552 keto-hydroxyglutarate 97.4 0.026 5.7E-07 54.6 19.4 153 145-376 22-180 (213)
76 PRK09613 thiH thiamine biosynt 97.3 0.051 1.1E-06 58.5 23.0 232 143-412 113-380 (469)
77 PF00290 Trp_syntA: Tryptophan 97.3 0.0071 1.5E-07 60.2 15.0 185 144-376 20-223 (259)
78 cd04726 KGPDC_HPS 3-Keto-L-gul 97.3 0.021 4.4E-07 53.7 17.4 170 144-377 9-184 (202)
79 cd04724 Tryptophan_synthase_al 97.3 0.013 2.9E-07 57.5 16.2 182 145-376 11-212 (242)
80 cd00945 Aldolase_Class_I Class 97.2 0.066 1.4E-06 49.4 19.9 180 146-376 11-198 (201)
81 cd00019 AP2Ec AP endonuclease 97.2 0.015 3.4E-07 57.4 16.4 243 151-427 13-277 (279)
82 PRK06245 cofG FO synthase subu 97.2 0.057 1.2E-06 55.3 20.3 233 144-411 40-300 (336)
83 TIGR01182 eda Entner-Doudoroff 97.1 0.06 1.3E-06 51.8 18.9 153 145-376 17-173 (204)
84 PRK05835 fructose-bisphosphate 97.1 0.063 1.4E-06 54.7 19.9 195 144-377 24-253 (307)
85 TIGR01521 FruBisAldo_II_B fruc 97.1 0.06 1.3E-06 55.7 19.9 212 136-378 13-274 (347)
86 PRK13399 fructose-1,6-bisphosp 97.1 0.055 1.2E-06 56.0 19.6 212 136-378 15-276 (347)
87 TIGR03550 F420_cofG 7,8-dideme 97.1 0.061 1.3E-06 55.0 19.7 228 143-412 33-297 (322)
88 PRK08185 hypothetical protein; 97.1 0.1 2.2E-06 52.7 20.7 200 136-378 10-227 (283)
89 PRK07709 fructose-bisphosphate 97.1 0.1 2.2E-06 52.7 20.6 194 144-377 25-231 (285)
90 PRK06801 hypothetical protein; 97.1 0.086 1.9E-06 53.3 20.1 200 136-379 15-233 (286)
91 PRK08508 biotin synthase; Prov 97.1 0.22 4.7E-06 49.9 22.8 221 145-412 40-274 (279)
92 PRK01060 endonuclease IV; Prov 97.0 0.17 3.6E-06 50.0 21.8 222 150-410 14-251 (281)
93 cd00947 TBP_aldolase_IIB Tagat 97.0 0.13 2.9E-06 51.6 20.9 194 144-378 20-225 (276)
94 PRK09856 fructoselysine 3-epim 97.0 0.05 1.1E-06 53.5 17.7 222 149-411 14-241 (275)
95 PRK12737 gatY tagatose-bisphos 97.0 0.1 2.2E-06 52.7 19.9 203 135-378 14-231 (284)
96 COG0159 TrpA Tryptophan syntha 97.0 0.047 1E-06 54.4 17.0 162 145-352 28-210 (265)
97 TIGR01859 fruc_bis_ald_ fructo 97.0 0.12 2.6E-06 52.1 20.3 196 144-379 23-230 (282)
98 cd00959 DeoC 2-deoxyribose-5-p 97.0 0.21 4.6E-06 47.6 21.0 187 144-379 13-203 (203)
99 TIGR01769 GGGP geranylgeranylg 97.0 0.072 1.6E-06 51.3 17.6 180 148-377 11-203 (205)
100 TIGR01858 tag_bisphos_ald clas 97.0 0.13 2.9E-06 51.8 20.2 202 136-378 13-229 (282)
101 PRK08610 fructose-bisphosphate 96.9 0.12 2.6E-06 52.2 19.9 194 144-377 25-231 (286)
102 COG2513 PrpB PEP phosphonomuta 96.9 0.052 1.1E-06 54.6 17.0 220 153-410 30-257 (289)
103 PRK00507 deoxyribose-phosphate 96.9 0.12 2.6E-06 50.2 19.3 190 143-379 17-208 (221)
104 PRK05718 keto-hydroxyglutarate 96.9 0.1 2.2E-06 50.5 18.5 152 145-372 24-176 (212)
105 PRK09195 gatY tagatose-bisphos 96.9 0.11 2.4E-06 52.5 19.2 202 136-378 15-231 (284)
106 cd00958 DhnA Class I fructose- 96.9 0.031 6.7E-07 54.1 14.9 132 231-379 80-214 (235)
107 TIGR02109 PQQ_syn_pqqE coenzym 96.9 0.083 1.8E-06 54.4 18.9 141 144-322 36-179 (358)
108 PRK07998 gatY putative fructos 96.9 0.14 3.1E-06 51.7 19.7 194 144-378 25-228 (283)
109 PRK05301 pyrroloquinoline quin 96.9 0.16 3.4E-06 52.8 20.8 142 144-323 45-189 (378)
110 PRK12857 fructose-1,6-bisphosp 96.9 0.17 3.6E-06 51.1 20.1 194 144-378 25-231 (284)
111 PF01116 F_bP_aldolase: Fructo 96.8 0.031 6.8E-07 56.4 14.8 193 144-378 24-234 (287)
112 TIGR01163 rpe ribulose-phospha 96.8 0.35 7.6E-06 45.5 21.3 175 145-378 8-192 (210)
113 PRK12738 kbaY tagatose-bisphos 96.8 0.2 4.3E-06 50.7 20.4 193 144-377 25-230 (286)
114 PRK05926 hypothetical protein; 96.8 0.16 3.6E-06 53.0 20.5 238 143-411 97-361 (370)
115 PRK09197 fructose-bisphosphate 96.8 0.2 4.4E-06 51.9 20.5 222 136-378 18-278 (350)
116 PRK06015 keto-hydroxyglutarate 96.8 0.2 4.3E-06 48.1 19.2 151 145-374 13-167 (201)
117 TIGR02317 prpB methylisocitrat 96.8 0.05 1.1E-06 54.9 15.8 216 154-410 26-252 (285)
118 TIGR00167 cbbA ketose-bisphosp 96.8 0.16 3.5E-06 51.4 19.4 194 144-377 25-234 (288)
119 smart00518 AP2Ec AP endonuclea 96.8 0.34 7.3E-06 47.6 21.4 222 152-409 14-246 (273)
120 TIGR00126 deoC deoxyribose-pho 96.8 0.29 6.2E-06 47.4 20.3 189 142-379 12-204 (211)
121 COG0502 BioB Biotin synthase a 96.8 0.24 5.3E-06 51.0 20.8 225 143-414 82-321 (335)
122 PLN02428 lipoic acid synthase 96.8 0.096 2.1E-06 54.3 18.0 146 144-323 129-282 (349)
123 PRK11613 folP dihydropteroate 96.7 0.42 9.2E-06 48.2 21.8 168 126-343 17-206 (282)
124 TIGR02320 PEP_mutase phosphoen 96.6 0.34 7.4E-06 48.9 20.5 220 154-410 22-263 (285)
125 PTZ00413 lipoate synthase; Pro 96.6 0.1 2.2E-06 54.6 16.9 148 143-324 175-331 (398)
126 TIGR02319 CPEP_Pphonmut carbox 96.6 0.11 2.4E-06 52.7 16.9 218 154-410 29-256 (294)
127 PRK13361 molybdenum cofactor b 96.6 0.15 3.3E-06 52.1 18.2 142 144-320 44-187 (329)
128 PRK09234 fbiC FO synthase; Rev 96.6 0.24 5.1E-06 57.1 21.3 237 142-411 554-821 (843)
129 TIGR00542 hxl6Piso_put hexulos 96.6 0.11 2.4E-06 51.4 16.4 144 231-411 98-242 (279)
130 PRK11320 prpB 2-methylisocitra 96.6 0.12 2.6E-06 52.4 16.5 218 154-410 30-257 (292)
131 PRK13397 3-deoxy-7-phosphohept 96.5 0.3 6.5E-06 48.5 18.9 184 145-381 26-223 (250)
132 PRK12928 lipoyl synthase; Prov 96.5 0.098 2.1E-06 52.9 15.9 162 144-337 86-263 (290)
133 PRK09140 2-dehydro-3-deoxy-6-p 96.5 0.42 9.1E-06 46.0 19.0 156 145-377 19-177 (206)
134 cd00452 KDPG_aldolase KDPG and 96.5 0.77 1.7E-05 43.2 20.5 157 145-378 13-170 (190)
135 TIGR03234 OH-pyruv-isom hydrox 96.4 0.72 1.6E-05 44.8 21.0 210 150-414 16-236 (254)
136 PRK13210 putative L-xylulose 5 96.4 0.27 5.9E-06 48.3 18.1 150 231-411 98-248 (284)
137 COG0826 Collagenase and relate 96.4 0.041 8.9E-07 57.0 12.5 101 231-352 17-118 (347)
138 KOG3111 D-ribulose-5-phosphate 96.4 0.29 6.2E-06 46.7 16.9 185 153-407 22-215 (224)
139 COG0191 Fba Fructose/tagatose 96.4 0.27 6E-06 49.5 17.8 237 135-421 14-263 (286)
140 PRK13753 dihydropteroate synth 96.4 0.69 1.5E-05 46.6 20.8 199 129-376 7-245 (279)
141 PF01081 Aldolase: KDPG and KH 96.4 0.061 1.3E-06 51.5 12.7 153 145-375 17-172 (196)
142 PRK07535 methyltetrahydrofolat 96.4 0.36 7.7E-06 48.1 18.6 182 145-374 22-223 (261)
143 PRK12677 xylose isomerase; Pro 96.4 0.25 5.4E-06 51.9 18.2 140 147-290 30-179 (384)
144 PTZ00170 D-ribulose-5-phosphat 96.3 0.8 1.7E-05 44.6 20.5 177 145-376 16-198 (228)
145 PRK13209 L-xylulose 5-phosphat 96.3 0.19 4.2E-06 49.6 16.5 144 231-411 103-247 (283)
146 PRK09997 hydroxypyruvate isome 96.3 1.1 2.4E-05 43.8 21.7 208 150-411 17-234 (258)
147 cd04729 NanE N-acetylmannosami 96.3 0.33 7.1E-06 46.6 17.2 196 118-376 2-203 (219)
148 PRK07226 fructose-bisphosphate 96.2 0.2 4.4E-06 49.8 15.9 191 144-377 35-229 (267)
149 PRK06806 fructose-bisphosphate 96.2 1.1 2.3E-05 45.3 21.0 202 136-379 15-230 (281)
150 PLN02951 Molybderin biosynthes 96.2 0.56 1.2E-05 49.1 19.6 166 144-346 89-264 (373)
151 TIGR00510 lipA lipoate synthas 96.2 0.2 4.3E-06 51.0 15.7 145 146-323 92-242 (302)
152 TIGR00284 dihydropteroate synt 96.2 0.88 1.9E-05 49.5 21.5 174 148-380 165-352 (499)
153 COG2896 MoaA Molybdenum cofact 96.1 0.8 1.7E-05 47.1 19.7 147 144-326 42-192 (322)
154 COG1060 ThiH Thiamine biosynth 96.1 0.43 9.3E-06 50.0 18.1 240 141-412 86-353 (370)
155 PRK06267 hypothetical protein; 96.0 1.5 3.2E-05 45.5 21.7 214 144-407 62-289 (350)
156 PF13714 PEP_mutase: Phosphoen 96.0 0.43 9.3E-06 47.0 16.7 195 154-381 22-221 (238)
157 PRK08005 epimerase; Validated 95.9 0.78 1.7E-05 44.4 17.9 174 146-378 11-190 (210)
158 PRK13307 bifunctional formalde 95.9 0.32 6.9E-06 51.3 16.3 170 145-376 182-355 (391)
159 PRK15452 putative protease; Pr 95.9 0.11 2.3E-06 55.7 13.0 98 231-348 14-111 (443)
160 PRK05481 lipoyl synthase; Prov 95.9 0.42 9.1E-06 48.2 16.6 146 144-322 79-230 (289)
161 PRK09989 hypothetical protein; 95.9 0.49 1.1E-05 46.3 16.7 210 150-411 17-234 (258)
162 PRK08883 ribulose-phosphate 3- 95.9 0.69 1.5E-05 44.9 17.3 166 148-376 12-192 (220)
163 PRK07114 keto-hydroxyglutarate 95.9 0.56 1.2E-05 45.8 16.6 153 145-376 24-185 (222)
164 TIGR02666 moaA molybdenum cofa 95.8 0.83 1.8E-05 46.6 18.6 167 144-346 42-219 (334)
165 cd00453 FTBP_aldolase_II Fruct 95.8 0.9 1.9E-05 46.9 18.3 204 144-378 20-271 (340)
166 PF01791 DeoC: DeoC/LacD famil 95.7 0.16 3.5E-06 49.4 12.4 201 148-379 19-228 (236)
167 PRK06852 aldolase; Validated 95.7 0.73 1.6E-05 47.0 17.3 131 232-377 120-263 (304)
168 TIGR03470 HpnH hopanoid biosyn 95.7 0.95 2.1E-05 46.2 18.3 160 144-344 58-228 (318)
169 PRK09250 fructose-bisphosphate 95.6 0.63 1.4E-05 48.2 16.7 84 232-325 151-239 (348)
170 cd00739 DHPS DHPS subgroup of 95.6 2.7 5.8E-05 41.8 22.3 201 129-377 6-242 (257)
171 TIGR01949 AroFGH_arch predicte 95.6 0.27 5.8E-06 48.6 13.5 204 127-378 20-226 (258)
172 KOG4175 Tryptophan synthase al 95.6 1.4 2.9E-05 42.5 17.4 164 145-352 29-212 (268)
173 cd00331 IGPS Indole-3-glycerol 95.5 1.5 3.3E-05 41.8 18.3 169 145-376 28-198 (217)
174 PF04481 DUF561: Protein of un 95.5 0.58 1.3E-05 45.5 14.9 202 109-376 3-211 (242)
175 COG0274 DeoC Deoxyribose-phosp 95.5 2.7 5.9E-05 41.1 19.4 188 142-376 18-209 (228)
176 PRK00164 moaA molybdenum cofac 95.5 1.3 2.7E-05 45.2 18.3 138 144-318 48-189 (331)
177 PRK08227 autoinducer 2 aldolas 95.4 0.83 1.8E-05 45.7 16.4 124 232-378 99-225 (264)
178 PLN02858 fructose-bisphosphate 95.4 0.88 1.9E-05 55.3 19.5 228 135-421 1110-1355(1378)
179 TIGR01520 FruBisAldo_II_A fruc 95.3 2.8 6E-05 43.7 20.3 210 136-378 24-286 (357)
180 PRK09722 allulose-6-phosphate 95.3 1.2 2.6E-05 43.7 16.8 172 151-377 18-195 (229)
181 COG0269 SgbH 3-hexulose-6-phos 95.3 0.22 4.7E-06 48.2 11.4 173 143-376 11-189 (217)
182 TIGR02631 xylA_Arthro xylose i 95.3 0.73 1.6E-05 48.4 16.4 142 145-290 29-180 (382)
183 TIGR01210 conserved hypothetic 95.3 0.78 1.7E-05 46.8 16.1 90 230-324 117-209 (313)
184 cd00946 FBP_aldolase_IIA Class 95.3 0.47 1E-05 49.2 14.4 136 231-378 114-274 (345)
185 TIGR03849 arch_ComA phosphosul 95.2 0.38 8.2E-06 47.4 13.0 155 232-409 16-184 (237)
186 TIGR03471 HpnJ hopanoid biosyn 95.2 0.63 1.4E-05 49.9 16.0 101 231-343 288-389 (472)
187 PLN02334 ribulose-phosphate 3- 95.2 3.2 6.9E-05 40.2 20.3 173 148-377 20-200 (229)
188 PRK08745 ribulose-phosphate 3- 95.2 0.74 1.6E-05 44.9 15.0 170 148-376 16-196 (223)
189 TIGR03586 PseI pseudaminic aci 95.2 1.8 4E-05 44.6 18.4 94 272-379 125-222 (327)
190 TIGR00539 hemN_rel putative ox 95.2 1.1 2.4E-05 46.4 17.0 85 230-322 100-186 (360)
191 cd00423 Pterin_binding Pterin 95.1 3.4 7.5E-05 40.8 19.8 136 144-325 20-173 (258)
192 cd00377 ICL_PEPM Members of th 95.1 2.3 5E-05 41.9 18.3 201 152-382 20-229 (243)
193 PRK13398 3-deoxy-7-phosphohept 95.1 4.1 9E-05 40.8 20.6 183 146-381 39-235 (266)
194 COG0320 LipA Lipoate synthase 95.1 0.81 1.7E-05 46.0 14.8 149 142-324 94-249 (306)
195 PRK12858 tagatose 1,6-diphosph 95.0 0.99 2.1E-05 46.8 16.1 178 232-428 111-316 (340)
196 PRK07455 keto-hydroxyglutarate 95.0 2.6 5.5E-05 39.9 17.7 156 146-377 22-178 (187)
197 smart00729 Elp3 Elongator prot 95.0 1.7 3.6E-05 39.6 16.2 86 231-325 101-189 (216)
198 COG0036 Rpe Pentose-5-phosphat 95.0 2.5 5.3E-05 41.2 17.6 177 147-379 15-198 (220)
199 PRK12595 bifunctional 3-deoxy- 95.0 2.1 4.6E-05 44.7 18.5 179 146-380 130-325 (360)
200 PRK00278 trpC indole-3-glycero 95.0 1.7 3.6E-05 43.3 17.0 166 146-376 68-237 (260)
201 cd02803 OYE_like_FMN_family Ol 95.0 1.4 3.1E-05 44.6 17.0 142 231-378 145-310 (327)
202 PRK01130 N-acetylmannosamine-6 95.0 3.6 7.8E-05 39.4 19.5 191 123-376 3-199 (221)
203 cd01320 ADA Adenosine deaminas 94.9 2.3 5.1E-05 42.9 18.4 132 231-375 77-213 (325)
204 TIGR01303 IMP_DH_rel_1 IMP deh 94.9 0.24 5.3E-06 53.4 11.7 77 303-385 224-300 (475)
205 TIGR02668 moaA_archaeal probab 94.8 2.1 4.6E-05 42.9 17.6 137 144-318 39-179 (302)
206 PRK13396 3-deoxy-7-phosphohept 94.8 2.8 6.1E-05 43.7 18.6 181 145-381 112-310 (352)
207 PRK09249 coproporphyrinogen II 94.8 1.8 4E-05 46.2 17.9 87 230-324 151-239 (453)
208 PRK13347 coproporphyrinogen II 94.7 1.3 2.8E-05 47.5 16.5 88 230-324 152-240 (453)
209 TIGR03249 KdgD 5-dehydro-4-deo 94.7 3.1 6.8E-05 41.9 18.4 200 144-407 22-224 (296)
210 TIGR02026 BchE magnesium-proto 94.7 0.91 2E-05 49.2 15.4 102 231-344 288-390 (497)
211 TIGR00587 nfo apurinic endonuc 94.7 2.3 5E-05 42.3 17.2 149 230-408 91-249 (274)
212 cd02933 OYE_like_FMN Old yello 94.6 1.2 2.6E-05 46.0 15.5 142 231-378 156-313 (338)
213 COG1082 IolE Sugar phosphate i 94.6 2.7 5.8E-05 40.9 17.3 220 152-411 19-244 (274)
214 PRK09358 adenosine deaminase; 94.6 3.1 6.6E-05 42.5 18.4 134 230-376 84-223 (340)
215 cd04740 DHOD_1B_like Dihydroor 94.5 0.76 1.6E-05 46.1 13.6 102 263-378 74-185 (296)
216 TIGR00538 hemN oxygen-independ 94.5 2.9 6.3E-05 44.8 18.7 108 230-345 151-275 (455)
217 cd00959 DeoC 2-deoxyribose-5-p 94.5 3.1 6.8E-05 39.6 17.1 141 232-406 22-169 (203)
218 TIGR03822 AblA_like_2 lysine-2 94.5 3 6.4E-05 42.7 18.0 167 144-347 118-296 (321)
219 cd06557 KPHMT-like Ketopantoat 94.5 1.2 2.5E-05 44.4 14.5 164 146-347 17-194 (254)
220 TIGR01290 nifB nitrogenase cof 94.5 6.5 0.00014 42.2 21.2 170 144-346 59-260 (442)
221 PF01261 AP_endonuc_2: Xylose 94.5 0.083 1.8E-06 48.8 6.1 194 154-359 1-196 (213)
222 cd04735 OYE_like_4_FMN Old yel 94.4 1.4 3E-05 45.7 15.5 141 231-376 148-310 (353)
223 cd04722 TIM_phosphate_binding 94.4 3.7 8E-05 37.0 18.1 131 231-382 16-146 (200)
224 PRK00043 thiE thiamine-phospha 94.4 3.1 6.8E-05 39.1 16.7 175 120-377 3-186 (212)
225 PRK13523 NADPH dehydrogenase N 94.4 1.4 3.1E-05 45.4 15.4 138 231-376 146-302 (337)
226 PRK00311 panB 3-methyl-2-oxobu 94.3 2.2 4.9E-05 42.7 16.2 169 146-352 20-202 (264)
227 COG0191 Fba Fructose/tagatose 94.3 0.33 7.2E-06 48.9 10.2 115 271-407 7-127 (286)
228 PRK05283 deoxyribose-phosphate 94.3 2.4 5.1E-05 42.4 16.1 209 127-385 11-235 (257)
229 COG0274 DeoC Deoxyribose-phosp 94.3 1.8 3.8E-05 42.4 14.7 109 288-407 63-179 (228)
230 TIGR01361 DAHP_synth_Bsub phos 94.3 2.1 4.6E-05 42.6 15.9 182 146-381 37-233 (260)
231 PF04131 NanE: Putative N-acet 94.2 0.22 4.7E-06 47.4 8.2 120 232-385 4-125 (192)
232 PTZ00372 endonuclease 4-like p 94.2 3.3 7.1E-05 44.1 17.9 151 230-407 221-379 (413)
233 PRK09234 fbiC FO synthase; Rev 94.2 2.7 5.9E-05 48.6 18.6 229 142-411 99-366 (843)
234 PRK08091 ribulose-phosphate 3- 94.2 3.8 8.2E-05 40.2 17.0 173 146-377 23-205 (228)
235 PRK08446 coproporphyrinogen II 94.1 2.3 5.1E-05 43.9 16.4 85 230-322 98-184 (350)
236 cd04733 OYE_like_2_FMN Old yel 94.1 1.6 3.4E-05 44.9 14.9 139 231-378 153-321 (338)
237 TIGR03821 AblA_like_1 lysine-2 94.0 4.6 9.9E-05 41.4 18.2 160 145-347 125-302 (321)
238 PRK05660 HemN family oxidoredu 94.0 3.2 6.9E-05 43.4 17.4 86 230-322 107-193 (378)
239 TIGR01579 MiaB-like-C MiaB-lik 94.0 1.7 3.8E-05 45.8 15.5 151 144-322 166-324 (414)
240 COG1856 Uncharacterized homolo 93.9 7.1 0.00015 38.4 22.6 216 146-403 40-270 (275)
241 PRK07259 dihydroorotate dehydr 93.9 1.3 2.7E-05 44.7 13.7 104 262-378 75-188 (301)
242 cd01335 Radical_SAM Radical SA 93.8 3.1 6.7E-05 37.2 14.9 139 148-318 31-171 (204)
243 PF03102 NeuB: NeuB family; I 93.7 2.8 6.2E-05 41.3 15.3 97 272-381 104-205 (241)
244 PRK05628 coproporphyrinogen II 93.7 2.9 6.4E-05 43.4 16.3 85 230-322 108-194 (375)
245 cd00951 KDGDH 5-dehydro-4-deox 93.7 5.3 0.00012 40.1 17.6 200 144-407 17-219 (289)
246 TIGR00222 panB 3-methyl-2-oxob 93.7 4.6 0.0001 40.4 16.8 163 145-347 19-196 (263)
247 PTZ00170 D-ribulose-5-phosphat 93.6 0.3 6.6E-06 47.5 8.3 98 300-411 16-116 (228)
248 TIGR02321 Pphn_pyruv_hyd phosp 93.6 2.6 5.7E-05 42.7 15.2 217 154-409 28-257 (290)
249 PF02679 ComA: (2R)-phospho-3- 93.6 0.38 8.3E-06 47.5 8.9 155 231-409 28-196 (244)
250 PLN02424 ketopantoate hydroxym 93.6 3.5 7.7E-05 42.5 16.1 160 147-346 41-217 (332)
251 PF01702 TGT: Queuine tRNA-rib 93.6 2.2 4.8E-05 41.6 14.3 132 233-382 4-144 (238)
252 PRK14338 (dimethylallyl)adenos 93.6 2.7 5.9E-05 45.2 16.2 149 144-321 183-340 (459)
253 COG1830 FbaB DhnA-type fructos 93.5 1.2 2.7E-05 44.4 12.4 128 232-377 102-235 (265)
254 cd00408 DHDPS-like Dihydrodipi 93.5 8.7 0.00019 38.0 22.6 199 144-407 14-216 (281)
255 TIGR00735 hisF imidazoleglycer 93.4 8.6 0.00019 37.8 20.5 206 148-412 30-253 (254)
256 PRK08508 biotin synthase; Prov 93.4 0.58 1.3E-05 46.9 10.1 135 261-411 40-181 (279)
257 cd02810 DHOD_DHPD_FMN Dihydroo 93.3 2.5 5.4E-05 42.1 14.5 83 232-326 116-199 (289)
258 cd00429 RPE Ribulose-5-phospha 93.3 7.1 0.00015 36.5 18.6 173 145-376 9-191 (211)
259 PRK08599 coproporphyrinogen II 93.3 2.8 6E-05 43.6 15.4 85 230-322 100-186 (377)
260 cd01321 ADGF Adenosine deamina 93.3 6.5 0.00014 40.7 17.9 159 231-410 74-247 (345)
261 PRK05904 coproporphyrinogen II 93.2 4.5 9.8E-05 42.0 16.7 86 230-322 103-189 (353)
262 cd02930 DCR_FMN 2,4-dienoyl-Co 93.2 3.5 7.7E-05 42.6 15.9 136 231-376 141-303 (353)
263 PRK09196 fructose-1,6-bisphosp 93.2 1.1 2.4E-05 46.6 11.9 118 269-407 5-134 (347)
264 PRK06843 inosine 5-monophospha 93.2 1.1 2.3E-05 47.6 12.0 72 305-385 154-225 (404)
265 PRK14057 epimerase; Provisiona 93.2 3.7 8.1E-05 40.9 15.1 178 146-378 30-220 (254)
266 cd06556 ICL_KPHMT Members of t 93.1 1.7 3.8E-05 42.8 12.7 151 152-339 23-188 (240)
267 cd02932 OYE_YqiM_FMN Old yello 93.0 3.9 8.4E-05 41.9 15.8 138 231-377 158-318 (336)
268 PRK10605 N-ethylmaleimide redu 93.0 3.7 8.1E-05 42.8 15.6 140 231-376 163-318 (362)
269 cd02810 DHOD_DHPD_FMN Dihydroo 92.9 2.9 6.3E-05 41.6 14.4 78 301-379 109-196 (289)
270 PRK12737 gatY tagatose-bisphos 92.9 1.2 2.7E-05 45.0 11.6 117 269-407 5-126 (284)
271 PRK07565 dihydroorotate dehydr 92.9 2.3 4.9E-05 43.7 13.8 104 262-379 85-197 (334)
272 COG3473 Maleate cis-trans isom 92.9 4.6 0.0001 39.2 14.7 145 150-346 56-204 (238)
273 PRK13745 anaerobic sulfatase-m 92.9 6.9 0.00015 41.3 17.8 146 144-322 47-200 (412)
274 PRK13813 orotidine 5'-phosphat 92.9 0.86 1.9E-05 43.5 10.1 174 145-378 13-191 (215)
275 TIGR03551 F420_cofH 7,8-dideme 92.9 0.7 1.5E-05 47.6 10.1 77 299-377 69-156 (343)
276 COG3623 SgaU Putative L-xylulo 92.9 3.2 6.8E-05 41.0 13.7 236 142-414 15-253 (287)
277 cd04732 HisA HisA. Phosphorib 92.8 9.3 0.0002 36.6 17.5 183 147-377 28-217 (234)
278 PRK06294 coproporphyrinogen II 92.8 4.3 9.3E-05 42.3 15.9 86 230-322 103-189 (370)
279 cd04739 DHOD_like Dihydroorota 92.8 2.6 5.6E-05 43.2 14.0 104 262-378 83-194 (325)
280 PRK15063 isocitrate lyase; Pro 92.8 7.4 0.00016 41.5 17.5 195 232-446 166-401 (428)
281 TIGR03569 NeuB_NnaB N-acetylne 92.8 5.4 0.00012 41.2 16.3 118 232-380 101-224 (329)
282 PRK14325 (dimethylallyl)adenos 92.7 6.5 0.00014 41.9 17.5 147 144-321 175-334 (444)
283 TIGR02320 PEP_mutase phosphoen 92.7 2.1 4.5E-05 43.3 12.9 107 261-378 61-188 (285)
284 PRK05835 fructose-bisphosphate 92.7 1.9 4.2E-05 44.1 12.7 116 270-406 5-125 (307)
285 cd00377 ICL_PEPM Members of th 92.7 1.5 3.2E-05 43.2 11.6 136 233-378 22-179 (243)
286 PRK04147 N-acetylneuraminate l 92.7 12 0.00027 37.5 21.8 197 144-407 20-222 (293)
287 PRK05799 coproporphyrinogen II 92.6 7.4 0.00016 40.4 17.3 85 230-322 99-185 (374)
288 PRK09195 gatY tagatose-bisphos 92.6 1.3 2.8E-05 44.9 11.2 117 269-407 5-126 (284)
289 TIGR01430 aden_deam adenosine 92.5 9.7 0.00021 38.6 17.8 133 231-376 76-213 (324)
290 PRK12738 kbaY tagatose-bisphos 92.5 2 4.4E-05 43.5 12.5 115 270-406 6-125 (286)
291 COG2513 PrpB PEP phosphonomuta 92.4 1.5 3.2E-05 44.4 11.2 134 233-376 31-183 (289)
292 PF00834 Ribul_P_3_epim: Ribul 92.4 0.11 2.3E-06 49.9 3.1 170 148-376 12-191 (201)
293 TIGR01521 FruBisAldo_II_B fruc 92.4 1.6 3.5E-05 45.3 11.8 117 270-407 4-132 (347)
294 PRK14332 (dimethylallyl)adenos 92.4 5.3 0.00011 42.9 16.2 145 144-320 182-335 (449)
295 PLN02495 oxidoreductase, actin 92.3 4 8.7E-05 43.1 14.8 102 274-384 104-222 (385)
296 TIGR03151 enACPred_II putative 92.3 4.8 0.0001 41.0 15.1 119 232-388 79-201 (307)
297 PRK12857 fructose-1,6-bisphosp 92.2 1.7 3.8E-05 43.9 11.7 117 269-407 5-126 (284)
298 COG0535 Predicted Fe-S oxidore 92.2 7.5 0.00016 38.9 16.4 144 144-322 47-192 (347)
299 cd00947 TBP_aldolase_IIB Tagat 92.2 2.2 4.7E-05 43.0 12.3 102 271-385 2-107 (276)
300 TIGR00343 pyridoxal 5'-phospha 92.2 4 8.6E-05 41.3 14.0 123 231-382 21-144 (287)
301 PRK14334 (dimethylallyl)adenos 92.2 5 0.00011 42.9 15.7 149 144-321 166-322 (440)
302 cd04734 OYE_like_3_FMN Old yel 92.2 7.2 0.00016 40.3 16.4 138 231-376 145-312 (343)
303 COG0800 Eda 2-keto-3-deoxy-6-p 92.2 3.9 8.5E-05 39.6 13.4 156 145-376 22-178 (211)
304 TIGR00089 RNA modification enz 92.1 7.7 0.00017 41.1 17.0 148 144-322 167-325 (429)
305 TIGR01501 MthylAspMutase methy 92.0 4.7 0.0001 36.3 12.9 86 232-339 44-129 (134)
306 PRK15108 biotin synthase; Prov 92.0 1.7 3.6E-05 45.1 11.5 114 262-385 77-197 (345)
307 PRK00112 tgt queuine tRNA-ribo 92.0 8.6 0.00019 40.3 16.8 134 237-383 134-272 (366)
308 cd02072 Glm_B12_BD B12 binding 91.9 4.6 9.9E-05 36.1 12.7 83 232-337 42-125 (128)
309 PRK13399 fructose-1,6-bisphosp 91.9 1.6 3.5E-05 45.4 11.2 102 269-382 5-110 (347)
310 TIGR01304 IMP_DH_rel_2 IMP deh 91.9 3 6.6E-05 43.7 13.3 89 268-377 119-214 (369)
311 PRK08208 coproporphyrinogen II 91.8 6.7 0.00014 41.7 16.1 87 230-324 141-229 (430)
312 PRK07107 inosine 5-monophospha 91.8 3.5 7.5E-05 45.0 14.1 173 142-366 235-414 (502)
313 PTZ00314 inosine-5'-monophosph 91.8 2.2 4.7E-05 46.5 12.5 70 306-381 243-312 (495)
314 TIGR01211 ELP3 histone acetylt 91.7 21 0.00044 39.3 20.0 111 229-347 205-335 (522)
315 PRK11572 copper homeostasis pr 91.6 15 0.00033 36.5 18.4 187 154-382 14-201 (248)
316 cd04727 pdxS PdxS is a subunit 91.6 2.7 6E-05 42.4 12.1 122 231-382 19-142 (283)
317 PRK04165 acetyl-CoA decarbonyl 91.6 9.8 0.00021 41.0 17.0 123 145-328 102-236 (450)
318 cd04740 DHOD_1B_like Dihydroor 91.5 4.1 8.8E-05 40.8 13.5 131 232-380 107-261 (296)
319 cd00950 DHDPS Dihydrodipicolin 91.4 16 0.00035 36.3 21.5 175 144-374 17-199 (284)
320 cd00952 CHBPH_aldolase Trans-o 91.4 1.4 3E-05 44.8 10.1 83 298-380 24-111 (309)
321 PRK13111 trpA tryptophan synth 91.4 5.9 0.00013 39.5 14.3 154 231-407 30-197 (258)
322 PRK07094 biotin synthase; Prov 91.4 4.5 9.8E-05 41.0 13.9 77 301-382 71-149 (323)
323 TIGR01858 tag_bisphos_ald clas 91.4 3 6.6E-05 42.1 12.3 115 270-406 4-123 (282)
324 PRK00208 thiG thiazole synthas 91.4 3.8 8.2E-05 40.7 12.6 174 152-381 25-208 (250)
325 PRK07379 coproporphyrinogen II 91.4 6 0.00013 41.7 15.1 86 230-322 115-201 (400)
326 TIGR01212 radical SAM protein, 91.4 7.1 0.00015 39.6 15.1 51 267-322 162-212 (302)
327 PF04055 Radical_SAM: Radical 91.3 5.4 0.00012 34.6 12.7 135 143-311 26-165 (166)
328 PF00701 DHDPS: Dihydrodipicol 91.3 7.9 0.00017 38.6 15.3 108 231-354 26-134 (289)
329 PRK05581 ribulose-phosphate 3- 91.3 13 0.00029 35.1 19.5 174 144-376 12-195 (220)
330 PLN02623 pyruvate kinase 91.2 25 0.00053 39.2 19.9 250 145-437 276-553 (581)
331 TIGR00126 deoC deoxyribose-pho 91.2 15 0.00033 35.5 17.5 108 288-406 56-170 (211)
332 PF01116 F_bP_aldolase: Fructo 91.1 0.89 1.9E-05 46.0 8.3 119 267-407 2-125 (287)
333 PLN02591 tryptophan synthase 91.1 9.2 0.0002 38.0 15.2 154 231-407 20-186 (250)
334 TIGR03849 arch_ComA phosphosul 91.1 1.8 4E-05 42.6 10.1 109 231-356 75-194 (237)
335 PRK14340 (dimethylallyl)adenos 91.0 6 0.00013 42.4 14.9 148 144-321 177-333 (445)
336 PRK08610 fructose-bisphosphate 91.0 3.6 7.9E-05 41.7 12.5 103 269-383 5-113 (286)
337 cd00954 NAL N-Acetylneuraminic 91.0 5 0.00011 40.2 13.5 104 232-350 26-131 (288)
338 TIGR02990 ectoine_eutA ectoine 90.9 5.5 0.00012 39.2 13.3 140 154-346 64-206 (239)
339 TIGR01496 DHPS dihydropteroate 90.8 2.1 4.5E-05 42.6 10.4 78 296-379 15-102 (257)
340 PRK13210 putative L-xylulose 5 90.8 8.6 0.00019 37.7 14.9 124 231-360 20-159 (284)
341 TIGR02313 HpaI-NOT-DapA 2,4-di 90.8 20 0.00043 36.2 22.4 181 144-376 17-203 (294)
342 PRK10481 hypothetical protein; 90.8 9.8 0.00021 37.3 14.8 132 132-330 60-195 (224)
343 PRK14339 (dimethylallyl)adenos 90.8 19 0.00041 38.3 18.2 149 144-321 155-315 (420)
344 cd04730 NPD_like 2-Nitropropan 90.7 4.8 0.0001 38.6 12.7 110 231-379 71-185 (236)
345 PF02679 ComA: (2R)-phospho-3- 90.7 1.3 2.7E-05 43.9 8.6 94 230-339 87-193 (244)
346 PRK07360 FO synthase subunit 2 90.6 2.2 4.7E-05 44.6 10.9 77 299-377 90-178 (371)
347 COG0648 Nfo Endonuclease IV [D 90.6 21 0.00046 36.1 18.1 219 149-408 15-247 (280)
348 PRK08673 3-deoxy-7-phosphohept 90.6 24 0.00051 36.7 19.0 183 146-381 105-301 (335)
349 cd06556 ICL_KPHMT Members of t 90.6 6.1 0.00013 39.0 13.3 131 232-378 24-175 (240)
350 cd00951 KDGDH 5-dehydro-4-deox 90.5 1.9 4.1E-05 43.4 10.0 82 297-378 15-100 (289)
351 COG0821 gcpE 1-hydroxy-2-methy 90.5 18 0.00039 37.5 16.7 234 146-445 34-301 (361)
352 COG2185 Sbm Methylmalonyl-CoA 90.4 6.5 0.00014 35.9 12.2 83 232-341 55-137 (143)
353 PF00809 Pterin_bind: Pterin b 90.4 11 0.00023 36.2 14.6 152 144-342 15-189 (210)
354 cd04724 Tryptophan_synthase_al 90.4 15 0.00032 36.0 15.9 157 231-407 18-184 (242)
355 PRK03170 dihydrodipicolinate s 90.4 1.9 4E-05 43.3 9.8 84 298-381 17-105 (292)
356 TIGR01302 IMP_dehydrog inosine 90.3 2.4 5.1E-05 45.5 11.1 72 304-381 224-295 (450)
357 cd00381 IMPDH IMPDH: The catal 90.3 6.9 0.00015 40.2 14.1 132 148-323 93-226 (325)
358 COG1902 NemA NADH:flavin oxido 90.3 9 0.00019 40.1 15.0 145 231-385 153-319 (363)
359 PRK00366 ispG 4-hydroxy-3-meth 90.3 21 0.00046 37.2 17.3 232 145-444 39-307 (360)
360 PTZ00314 inosine-5'-monophosph 90.3 5.5 0.00012 43.3 13.9 163 147-367 240-407 (495)
361 cd04747 OYE_like_5_FMN Old yel 90.2 12 0.00026 39.1 15.9 143 231-376 148-325 (361)
362 PF07302 AroM: AroM protein; 90.2 11 0.00023 36.9 14.4 80 235-340 120-199 (221)
363 TIGR02317 prpB methylisocitrat 90.1 4 8.7E-05 41.3 11.9 106 262-377 57-179 (285)
364 TIGR03700 mena_SCO4494 putativ 90.1 2.9 6.3E-05 43.3 11.2 77 299-377 78-165 (351)
365 PRK13758 anaerobic sulfatase-m 90.1 15 0.00032 37.9 16.4 168 144-343 38-223 (370)
366 PRK06801 hypothetical protein; 90.1 3.3 7.2E-05 41.9 11.2 102 269-383 5-110 (286)
367 PRK14336 (dimethylallyl)adenos 90.1 9.8 0.00021 40.4 15.4 147 144-321 152-309 (418)
368 PRK14331 (dimethylallyl)adenos 90.0 7.9 0.00017 41.3 14.7 147 144-322 174-331 (437)
369 TIGR01859 fruc_bis_ald_ fructo 90.0 5 0.00011 40.5 12.5 103 270-384 4-111 (282)
370 TIGR00262 trpA tryptophan synt 90.0 20 0.00044 35.5 16.7 153 231-407 28-195 (256)
371 TIGR01302 IMP_dehydrog inosine 90.0 3.3 7E-05 44.5 11.8 162 148-367 223-390 (450)
372 PRK08255 salicylyl-CoA 5-hydro 89.9 9.3 0.0002 43.8 16.0 139 230-377 554-715 (765)
373 PF01261 AP_endonuc_2: Xylose 89.9 6.5 0.00014 36.0 12.4 119 233-360 1-138 (213)
374 cd00952 CHBPH_aldolase Trans-o 89.9 9.1 0.0002 38.9 14.4 100 232-346 34-134 (309)
375 PRK14330 (dimethylallyl)adenos 89.9 12 0.00027 39.7 16.0 150 144-321 168-325 (434)
376 cd02801 DUS_like_FMN Dihydrour 89.8 7.5 0.00016 37.0 13.2 137 232-379 72-213 (231)
377 TIGR03128 RuMP_HxlA 3-hexulose 89.8 1.8 3.8E-05 40.9 8.6 99 299-415 8-108 (206)
378 COG2100 Predicted Fe-S oxidore 89.8 11 0.00023 39.1 14.4 173 144-346 140-329 (414)
379 cd02940 DHPD_FMN Dihydropyrimi 89.8 17 0.00037 36.7 16.2 77 300-377 110-198 (299)
380 PRK08207 coproporphyrinogen II 89.8 2.7 5.8E-05 45.7 11.0 107 230-344 269-391 (488)
381 PRK02412 aroD 3-dehydroquinate 89.8 22 0.00048 35.1 23.2 235 127-409 4-250 (253)
382 cd00408 DHDPS-like Dihydrodipi 89.7 8.3 0.00018 38.2 13.8 107 231-353 22-129 (281)
383 PRK14337 (dimethylallyl)adenos 89.7 12 0.00026 40.1 15.8 148 144-322 176-335 (446)
384 PF02548 Pantoate_transf: Keto 89.7 9.7 0.00021 38.1 13.9 152 152-340 27-194 (261)
385 TIGR00449 tgt_general tRNA-gua 89.7 6.9 0.00015 41.0 13.6 135 232-382 125-266 (367)
386 PRK13585 1-(5-phosphoribosyl)- 89.7 20 0.00044 34.6 19.3 200 148-405 32-239 (241)
387 PRK14335 (dimethylallyl)adenos 89.7 13 0.00028 39.9 16.1 149 144-321 180-343 (455)
388 PRK08444 hypothetical protein; 89.7 1.3 2.8E-05 46.2 8.1 74 299-378 79-167 (353)
389 PRK05567 inosine 5'-monophosph 89.5 2.9 6.2E-05 45.3 11.0 69 306-380 230-298 (486)
390 TIGR00559 pdxJ pyridoxine 5'-p 89.5 1.4 3E-05 43.4 7.6 95 231-342 135-236 (237)
391 PRK05458 guanosine 5'-monophos 89.4 5.2 0.00011 41.3 12.2 71 306-382 99-171 (326)
392 PRK07998 gatY putative fructos 89.4 4.5 9.7E-05 40.9 11.5 101 270-383 6-110 (283)
393 cd02940 DHPD_FMN Dihydropyrimi 89.4 6.3 0.00014 39.8 12.8 87 232-328 118-205 (299)
394 TIGR00612 ispG_gcpE 1-hydroxy- 89.4 29 0.00064 36.0 18.4 232 145-445 31-299 (346)
395 PRK03620 5-dehydro-4-deoxygluc 89.3 2.7 5.8E-05 42.6 10.0 82 297-378 22-107 (303)
396 PF03932 CutC: CutC family; I 89.2 10 0.00022 36.6 13.3 183 154-379 13-199 (201)
397 PTZ00124 adenosine deaminase; 89.2 23 0.0005 37.1 17.0 140 231-381 110-255 (362)
398 cd02931 ER_like_FMN Enoate red 89.2 19 0.00041 37.8 16.5 139 231-376 154-332 (382)
399 PRK07535 methyltetrahydrofolat 89.2 10 0.00022 37.9 13.7 122 232-385 30-168 (261)
400 PRK11613 folP dihydropteroate 89.1 17 0.00037 36.8 15.5 128 232-385 43-192 (282)
401 TIGR02082 metH 5-methyltetrahy 89.0 13 0.00029 44.7 16.8 160 146-352 366-547 (1178)
402 TIGR03249 KdgD 5-dehydro-4-deo 89.0 2.8 6.2E-05 42.2 9.9 82 297-378 20-105 (296)
403 cd00945 Aldolase_Class_I Class 88.9 18 0.00039 32.9 15.2 126 232-381 18-151 (201)
404 PRK14326 (dimethylallyl)adenos 88.8 15 0.00032 40.1 15.9 149 144-321 185-342 (502)
405 PRK08185 hypothetical protein; 88.8 5.2 0.00011 40.5 11.5 102 271-385 2-106 (283)
406 cd00950 DHDPS Dihydrodipicolin 88.8 6.1 0.00013 39.3 12.1 85 297-381 15-104 (284)
407 PRK04180 pyridoxal biosynthesi 88.8 1.8 4E-05 43.8 8.1 120 231-379 28-148 (293)
408 cd00954 NAL N-Acetylneuraminic 88.7 28 0.0006 34.9 23.1 193 144-406 17-220 (288)
409 PLN02417 dihydrodipicolinate s 88.7 6.9 0.00015 39.1 12.4 100 297-406 16-120 (280)
410 TIGR01125 MiaB-like tRNA modif 88.7 16 0.00034 38.9 15.7 147 144-321 163-320 (430)
411 TIGR00430 Q_tRNA_tgt tRNA-guan 88.6 21 0.00046 37.4 16.3 139 232-383 125-268 (368)
412 TIGR00683 nanA N-acetylneurami 88.6 3.2 6.9E-05 41.8 10.0 83 297-379 15-103 (290)
413 cd01299 Met_dep_hydrolase_A Me 88.6 9.6 0.00021 38.5 13.5 71 300-377 117-198 (342)
414 COG0329 DapA Dihydrodipicolina 88.6 30 0.00066 35.1 21.3 195 144-407 21-224 (299)
415 cd04728 ThiG Thiazole synthase 88.4 4.4 9.5E-05 40.2 10.3 175 152-381 24-208 (248)
416 PRK14328 (dimethylallyl)adenos 88.3 18 0.00039 38.6 16.0 146 144-320 175-331 (439)
417 PRK00230 orotidine 5'-phosphat 88.3 21 0.00046 34.7 15.2 115 232-376 72-204 (230)
418 TIGR00674 dapA dihydrodipicoli 88.3 3.4 7.3E-05 41.3 9.9 84 297-380 13-101 (285)
419 PRK14327 (dimethylallyl)adenos 88.3 20 0.00043 39.3 16.4 148 144-322 240-398 (509)
420 TIGR02313 HpaI-NOT-DapA 2,4-di 88.2 3.3 7.2E-05 41.8 9.8 84 297-380 15-103 (294)
421 TIGR01574 miaB-methiolase tRNA 88.2 18 0.0004 38.5 15.9 148 144-322 173-333 (438)
422 PRK03170 dihydrodipicolinate s 88.2 11 0.00024 37.7 13.5 101 231-346 26-127 (292)
423 PRK07709 fructose-bisphosphate 88.2 5.6 0.00012 40.3 11.3 103 269-383 5-113 (285)
424 PRK11320 prpB 2-methylisocitra 88.1 7.7 0.00017 39.4 12.3 107 261-377 61-184 (292)
425 PRK13533 7-cyano-7-deazaguanin 88.1 11 0.00023 41.1 14.1 136 234-381 109-249 (487)
426 PRK07565 dihydroorotate dehydr 88.1 33 0.00071 35.2 17.1 164 145-344 111-289 (334)
427 TIGR03234 OH-pyruv-isom hydrox 88.1 6.4 0.00014 38.2 11.4 110 231-357 18-146 (254)
428 PRK05718 keto-hydroxyglutarate 88.0 2.9 6.2E-05 40.5 8.7 99 300-411 24-130 (212)
429 PF00701 DHDPS: Dihydrodipicol 87.9 31 0.00067 34.4 18.4 178 144-376 18-202 (289)
430 PRK13209 L-xylulose 5-phosphat 87.9 9.3 0.0002 37.6 12.6 124 231-360 25-164 (283)
431 PRK07259 dihydroorotate dehydr 87.8 14 0.0003 37.1 14.0 163 145-343 101-282 (301)
432 PRK09490 metH B12-dependent me 87.7 75 0.0016 38.6 21.9 251 133-434 144-456 (1229)
433 TIGR01334 modD putative molybd 87.6 11 0.00024 38.0 13.0 125 233-381 139-265 (277)
434 TIGR01431 adm_rel adenosine de 87.6 19 0.00041 39.2 15.6 145 231-381 201-357 (479)
435 cd00381 IMPDH IMPDH: The catal 87.6 8.4 0.00018 39.6 12.4 72 304-381 94-165 (325)
436 PRK09057 coproporphyrinogen II 87.5 27 0.00059 36.4 16.4 86 230-323 104-190 (380)
437 PRK04147 N-acetylneuraminate l 87.5 3.9 8.6E-05 41.1 9.8 84 297-380 18-107 (293)
438 PRK14041 oxaloacetate decarbox 87.4 4.9 0.00011 43.5 11.0 22 414-435 179-200 (467)
439 TIGR01037 pyrD_sub1_fam dihydr 87.4 34 0.00073 34.3 17.8 104 262-378 74-188 (300)
440 PF05690 ThiG: Thiazole biosyn 87.1 6 0.00013 39.1 10.3 176 152-381 23-208 (247)
441 PRK02048 4-hydroxy-3-methylbut 87.1 43 0.00094 37.4 17.9 166 144-343 37-225 (611)
442 PRK12457 2-dehydro-3-deoxyphos 87.0 37 0.0008 34.4 18.9 183 146-381 28-239 (281)
443 TIGR02351 thiH thiazole biosyn 87.0 11 0.00025 39.2 13.1 76 300-382 103-182 (366)
444 COG3010 NanE Putative N-acetyl 86.9 7.7 0.00017 37.6 10.7 68 306-385 88-160 (229)
445 TIGR02082 metH 5-methyltetrahy 86.7 40 0.00087 40.7 18.9 118 300-428 273-434 (1178)
446 PF13714 PEP_mutase: Phosphoen 86.7 8.4 0.00018 37.9 11.3 107 261-377 52-173 (238)
447 PRK06582 coproporphyrinogen II 86.7 25 0.00055 37.0 15.6 85 230-323 111-197 (390)
448 TIGR00683 nanA N-acetylneurami 86.5 16 0.00034 36.8 13.5 99 232-345 26-126 (290)
449 PF04273 DUF442: Putative phos 86.4 4 8.6E-05 35.4 7.9 77 274-357 20-96 (110)
450 TIGR01740 pyrF orotidine 5'-ph 86.4 11 0.00023 36.2 11.7 118 232-376 68-193 (213)
451 TIGR00167 cbbA ketose-bisphosp 86.3 12 0.00026 38.0 12.5 119 268-407 4-129 (288)
452 PRK07084 fructose-bisphosphate 86.3 4.5 9.7E-05 41.7 9.4 107 267-385 9-123 (321)
453 PLN02433 uroporphyrinogen deca 86.2 4.8 0.0001 41.5 9.8 72 303-378 179-259 (345)
454 cd04722 TIM_phosphate_binding 86.1 25 0.00054 31.5 17.2 178 148-378 12-198 (200)
455 PRK09206 pyruvate kinase; Prov 86.0 51 0.0011 35.8 17.7 254 145-440 170-450 (470)
456 cd00946 FBP_aldolase_IIA Class 85.9 9.8 0.00021 39.6 11.8 117 269-407 3-152 (345)
457 PRK08318 dihydropyrimidine deh 85.7 39 0.00084 35.7 16.6 163 146-343 111-302 (420)
458 TIGR00674 dapA dihydrodipicoli 85.6 41 0.00089 33.6 22.8 177 144-376 15-199 (285)
459 PF01645 Glu_synthase: Conserv 85.6 5.1 0.00011 42.1 9.6 85 300-385 154-242 (368)
460 PRK00115 hemE uroporphyrinogen 85.6 26 0.00057 36.0 14.9 24 145-168 183-206 (346)
461 PRK14329 (dimethylallyl)adenos 85.5 28 0.00061 37.5 15.6 149 144-321 196-358 (467)
462 PRK00507 deoxyribose-phosphate 85.5 38 0.00081 33.0 16.3 110 288-408 60-176 (221)
463 cd01572 QPRTase Quinolinate ph 85.4 11 0.00023 37.8 11.5 106 298-424 124-245 (268)
464 cd00288 Pyruvate_Kinase Pyruva 85.3 56 0.0012 35.6 17.7 200 145-383 172-387 (480)
465 PRK06354 pyruvate kinase; Prov 85.3 67 0.0015 35.9 18.6 256 144-441 175-458 (590)
466 PLN02389 biotin synthase 85.2 6.9 0.00015 41.2 10.5 130 262-408 117-254 (379)
467 TIGR00222 panB 3-methyl-2-oxob 85.2 18 0.00038 36.4 12.8 99 232-344 27-128 (263)
468 TIGR01303 IMP_DH_rel_1 IMP deh 85.2 13 0.00029 40.3 12.9 162 148-367 224-392 (475)
469 TIGR02495 NrdG2 anaerobic ribo 85.2 31 0.00068 31.8 16.7 79 232-316 104-183 (191)
470 cd00405 PRAI Phosphoribosylant 85.1 26 0.00057 33.0 13.6 157 230-425 9-172 (203)
471 PRK05265 pyridoxine 5'-phospha 85.1 4 8.7E-05 40.2 8.1 95 231-342 138-237 (239)
472 PRK09058 coproporphyrinogen II 85.1 45 0.00098 35.7 16.9 85 230-322 163-249 (449)
473 TIGR02319 CPEP_Pphonmut carbox 85.0 16 0.00034 37.3 12.6 107 261-377 60-183 (294)
474 cd02929 TMADH_HD_FMN Trimethyl 84.9 27 0.00058 36.5 14.7 139 232-377 155-317 (370)
475 COG0329 DapA Dihydrodipicolina 84.9 5.8 0.00013 40.2 9.6 82 298-379 20-106 (299)
476 TIGR03820 lys_2_3_AblA lysine- 84.9 60 0.0013 34.8 21.0 165 144-347 137-314 (417)
477 cd03174 DRE_TIM_metallolyase D 84.8 11 0.00023 36.6 11.2 12 272-283 23-34 (265)
478 TIGR00736 nifR3_rel_arch TIM-b 84.8 39 0.00085 33.2 14.9 131 238-380 90-221 (231)
479 PRK09997 hydroxypyruvate isome 84.7 18 0.00039 35.3 12.7 108 231-357 19-147 (258)
480 PRK05985 cytosine deaminase; P 84.7 32 0.00068 35.7 15.2 148 231-401 164-314 (391)
481 COG2876 AroA 3-deoxy-D-arabino 84.7 29 0.00063 34.9 13.8 209 121-383 24-253 (286)
482 cd00003 PNPsynthase Pyridoxine 84.7 12 0.00025 37.0 11.0 77 231-323 135-211 (234)
483 PRK09856 fructoselysine 3-epim 84.7 8.6 0.00019 37.6 10.4 120 231-358 17-153 (275)
484 PRK14333 (dimethylallyl)adenos 84.6 21 0.00046 38.1 14.1 149 144-321 176-340 (448)
485 COG3142 CutC Uncharacterized p 84.5 30 0.00065 34.1 13.6 190 152-382 12-203 (241)
486 PLN02925 4-hydroxy-3-methylbut 84.5 62 0.0014 36.8 17.7 166 144-344 106-295 (733)
487 PF03932 CutC: CutC family; I 84.4 40 0.00087 32.4 14.8 167 230-424 10-189 (201)
488 PF04131 NanE: Putative N-acet 84.3 14 0.00029 35.4 11.0 163 151-376 2-170 (192)
489 TIGR00284 dihydropteroate synt 84.3 9.1 0.0002 41.8 11.2 74 302-382 164-237 (499)
490 PRK06252 methylcobalamin:coenz 84.3 5.9 0.00013 40.3 9.4 83 305-405 182-272 (339)
491 cd04739 DHOD_like Dihydroorota 84.3 53 0.0011 33.7 16.9 161 145-343 109-286 (325)
492 cd02801 DUS_like_FMN Dihydrour 84.2 9.1 0.0002 36.5 10.1 78 301-379 65-158 (231)
493 TIGR02321 Pphn_pyruv_hyd phosp 84.1 23 0.00049 36.0 13.3 107 261-377 58-184 (290)
494 cd04731 HisF The cyclase subun 84.1 42 0.00092 32.5 16.3 92 302-407 148-242 (243)
495 TIGR00542 hxl6Piso_put hexulos 84.0 39 0.00084 33.3 14.8 122 231-358 20-157 (279)
496 PRK07807 inosine 5-monophospha 84.0 24 0.00051 38.4 14.2 163 148-367 226-394 (479)
497 PRK01261 aroD 3-dehydroquinate 84.0 45 0.00098 32.7 21.6 217 125-410 7-228 (229)
498 PLN02951 Molybderin biosynthes 83.8 25 0.00054 36.8 14.0 125 261-410 90-229 (373)
499 TIGR00640 acid_CoA_mut_C methy 83.8 26 0.00056 31.3 12.1 69 232-325 45-114 (132)
500 PRK08898 coproporphyrinogen II 83.8 52 0.0011 34.6 16.4 83 230-322 122-207 (394)
No 1
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=3.4e-75 Score=591.66 Aligned_cols=326 Identities=83% Similarity=1.250 Sum_probs=308.2
Q ss_pred CCccccccccccc-------cccCCCchhhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCC
Q 012949 90 GRNHKMFGSACDI-------YNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGL 162 (452)
Q Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv 162 (452)
|+.+.++|+.... |+|..+.-+.+.+.+|++++||++|+|+|+|||||+|.++..|++++|++|++.|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV 82 (347)
T PLN02746 3 GSTSTVSGTLGSSWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGL 82 (347)
T ss_pred cchhhhhhccccccchhhhccccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4555566655444 677777778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCC
Q 012949 163 PVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242 (452)
Q Consensus 163 ~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~ 242 (452)
+.||+|+|++|+++||++|.+++++.++...+.++.+++++.+ ++++|+++|++
T Consensus 83 ~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~--------------------------die~A~~~g~~ 136 (347)
T PLN02746 83 PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLK--------------------------GFEAAIAAGAK 136 (347)
T ss_pred CEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHH--------------------------HHHHHHHcCcC
Confidence 9999999999999999999999999998877788888887654 99999999999
Q ss_pred EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 243 ~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
.|++++++||.|++.|+|+|++|+++.+.+++++||++|++|+++|+++||||++++++++++.++++++.++|+++|+|
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l 216 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL 216 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHH
Q 012949 323 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVV 402 (452)
Q Consensus 323 ~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv 402 (452)
+||+|+++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|++|||||||||||+||++||+|+
T Consensus 217 ~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv 296 (347)
T PLN02746 217 GDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVV 296 (347)
T ss_pred cCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHH
Confidence 99999999999999999999999877899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949 403 YMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 441 (452)
Q Consensus 403 ~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~ 441 (452)
++|+.+|+++++|+++|.++++++++.+|+++|++....
T Consensus 297 ~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~ 335 (347)
T PLN02746 297 YMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA 335 (347)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999999999999886544
No 2
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.7e-70 Score=546.91 Aligned_cols=287 Identities=64% Similarity=1.041 Sum_probs=277.5
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~ 202 (452)
||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+|+|++.|.++++..+.+.++.++.++++
T Consensus 1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~ 80 (287)
T PRK05692 1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP 80 (287)
T ss_pred CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence 37789999999999999999999999999999999999999999999999999999999988888887767788888887
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
+.+ ++++|+++|++.|++++++||.|.+.|+|+|++++++++.+++++||++|+
T Consensus 81 ~~~--------------------------~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~ 134 (287)
T PRK05692 81 NLK--------------------------GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGV 134 (287)
T ss_pred CHH--------------------------HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 654 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ 362 (452)
.|+++|+++|+||++++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+
T Consensus 135 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~ 214 (287)
T PRK05692 135 RVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL 214 (287)
T ss_pred EEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997799999999999999
Q ss_pred HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG 435 (452)
Q Consensus 363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p 435 (452)
||+++|+++||++||+|++|||||||||||+||++||+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 215 AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 215 ANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HHHHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886
No 3
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-68 Score=499.36 Aligned_cols=305 Identities=70% Similarity=1.061 Sum_probs=297.3
Q ss_pred hHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh
Q 012949 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD 191 (452)
Q Consensus 112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~ 191 (452)
.+.+.++.....|++|+|+++.+|||.|.++..+|++.|++++++|.+.|+..||.++|+||||+||++|..|++..+++
T Consensus 4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~ 83 (316)
T KOG2368|consen 4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK 83 (316)
T ss_pred hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHH
Q 012949 192 LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYR 271 (452)
Q Consensus 192 ~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~ 271 (452)
.+++.+++|+||++ +++.|+++|+.+|.+|-++||.|...|.||++||++.++.
T Consensus 84 ~~Gv~yPVLtPNlk--------------------------Gf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~ 137 (316)
T KOG2368|consen 84 FPGVSYPVLTPNLK--------------------------GFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFM 137 (316)
T ss_pred CCCccccccCcchh--------------------------hHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHH
Confidence 99999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE
Q 012949 272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351 (452)
Q Consensus 272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~ 351 (452)
++.+.|++++++|++|++++.|||.++...|+.+.++.+.++++||..|.|.||+|+.+|..+.+++..+.+.+|...|.
T Consensus 138 ~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LA 217 (316)
T KOG2368|consen 138 EVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLA 217 (316)
T ss_pred HHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhC
Q 012949 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG 431 (452)
Q Consensus 352 vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g 431 (452)
+|||||||+|+||.|.+++.|++.||.||.|||+||||+|.+||++||+++++|+.+|++|++|+.+|.++++++.+.+|
T Consensus 218 VH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~alg 297 (316)
T KOG2368|consen 218 VHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALG 297 (316)
T ss_pred hhhhhhHHHHHHHHHHHHHhcceehhhhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccc
Q 012949 432 RPSGSKTAIAL 442 (452)
Q Consensus 432 ~~~p~~~pi~G 442 (452)
++..++.+.+-
T Consensus 298 r~~~Skva~A~ 308 (316)
T KOG2368|consen 298 RTTWSKVAQAM 308 (316)
T ss_pred CCchhHHHHHH
Confidence 99988865543
No 4
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=1.2e-66 Score=516.21 Aligned_cols=274 Identities=59% Similarity=0.957 Sum_probs=264.2
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL 208 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i 208 (452)
|+|+|||||+|.++..|++++|++|++.|+++||++||+|+|++|+++|++.|.++++..+....++++.+|+++.+
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~--- 77 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLR--- 77 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHH---
Confidence 68999999999999999999999999999999999999999999999999999988888777666788988887654
Q ss_pred hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949 209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 288 (452)
Q Consensus 209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l 288 (452)
++++|+++|++.|++++++||.|++.|+|+|++++++++.+++++||+.|++|++++
T Consensus 78 -----------------------dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i 134 (274)
T cd07938 78 -----------------------GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYV 134 (274)
T ss_pred -----------------------HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
+++|+||++++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|
T Consensus 135 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA 214 (274)
T cd07938 135 STAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAA 214 (274)
T ss_pred EeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949 369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~ 428 (452)
+++||++||+|++|||+||||++|+||++||+++++|+.+|+++++|+++|.++++++++
T Consensus 215 ~~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 215 LEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred HHhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 5
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=2.7e-64 Score=519.99 Aligned_cols=284 Identities=24% Similarity=0.333 Sum_probs=259.1
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEe
Q 012949 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLT 201 (452)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~ 201 (452)
|++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|. +.+.+ +.++.+.+ ..+.++.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~ 74 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPA-------VSEDEKEAIKAIAKLGLNASILALN 74 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------cChHHHHHHHHHHhcCCCeEEEEEc
Confidence 567999999999999999999999999999999999999999999864 33332 44555543 2234444444
Q ss_pred cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949 202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS 281 (452)
Q Consensus 202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G 281 (452)
+.. .+++++|+++|++.|++++++||.|++.++|+|++++++++.+++++||+.|
T Consensus 75 r~~-------------------------~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G 129 (378)
T PRK11858 75 RAV-------------------------KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG 129 (378)
T ss_pred ccC-------------------------HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 332 2499999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949 282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 361 (452)
Q Consensus 282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA 361 (452)
++|. |++|+.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ +++|++|+|||+|||
T Consensus 130 ~~v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA 202 (378)
T PRK11858 130 LYVS------FSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMA 202 (378)
T ss_pred CeEE------EEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHH
Confidence 9887 456789999999999999999999999999999999999999999999999998 468999999999999
Q ss_pred HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCccc
Q 012949 362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI 440 (452)
Q Consensus 362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi 440 (452)
+||+++|+++||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++|+
T Consensus 203 ~AN~laAv~aGa~~vd~tv~GlGe------raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pi 276 (378)
T PRK11858 203 TANALAGIEAGAKQVHTTVNGLGE------RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAI 276 (378)
T ss_pred HHHHHHHHHcCCCEEEEeeccccc------cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCcc
Confidence 999999999999999999999999 9999999999999994 899999999999999999999999999999999
Q ss_pred ccchhhhhccCC
Q 012949 441 ALNRIAADASKI 452 (452)
Q Consensus 441 ~G~~vf~h~Sgi 452 (452)
+|+++|+|+|||
T Consensus 277 vG~~~F~h~sGi 288 (378)
T PRK11858 277 VGENAFAHESGI 288 (378)
T ss_pred ccchhhhhhccc
Confidence 999999999998
No 6
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=1.4e-63 Score=512.68 Aligned_cols=282 Identities=23% Similarity=0.289 Sum_probs=259.8
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEecc
Q 012949 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLTPN 203 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~~~ 203 (452)
.|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|. +.+.+ +.++.+.+ .++.++.++++.
T Consensus 1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~r~ 73 (365)
T TIGR02660 1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPA-------MGEEERAVIRAIVALGLPARLMAWCRA 73 (365)
T ss_pred CcEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------CCHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 3789999999999999999999999999999999999999999864 33322 44555543 356677776643
Q ss_pred hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949 204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP 283 (452)
Q Consensus 204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~ 283 (452)
.. +++++|+++|++.|++++++||.|++.++|+|++++++++.+++++||++|++
T Consensus 74 ~~-------------------------~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~ 128 (365)
T TIGR02660 74 RD-------------------------ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF 128 (365)
T ss_pred CH-------------------------HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 22 49999999999999999999999999999999999999999999999999998
Q ss_pred EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949 284 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP 363 (452)
Q Consensus 284 V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A 363 (452)
|. |++++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|||+|
T Consensus 129 v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~A 201 (365)
T TIGR02660 129 VS------VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATA 201 (365)
T ss_pred EE------EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHH
Confidence 76 5678999999999999999999999999999999999999999999999999986 6899999999999999
Q ss_pred HHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHH-HcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCccccc
Q 012949 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML-SGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIAL 442 (452)
Q Consensus 364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L-~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G 442 (452)
|+++|+++||++||+|++|||| |+||++||+|+++| ..+|+++++|+++|.++++++++.+|+++|+++|++|
T Consensus 202 NalaA~~aGa~~vd~tl~GiGe------raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG 275 (365)
T TIGR02660 202 NTLAAVRAGATHVNTTVNGLGE------RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVG 275 (365)
T ss_pred HHHHHHHhCCCEEEEEeecccc------ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 9999999999999999999999 99999999999999 5589999999999999999999999999999999999
Q ss_pred chhhhhccCC
Q 012949 443 NRIAADASKI 452 (452)
Q Consensus 443 ~~vf~h~Sgi 452 (452)
+|+|+|+|||
T Consensus 276 ~~~f~h~sGi 285 (365)
T TIGR02660 276 ESVFTHESGI 285 (365)
T ss_pred HhHHHhccch
Confidence 9999999997
No 7
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=2.4e-63 Score=530.47 Aligned_cols=288 Identities=24% Similarity=0.327 Sum_probs=264.1
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~ 202 (452)
||++|+|+|||||||+|.+++.|++++|++|++.|+++||++||+|||.+.. .|.+.+.+..+...+.++.+|++
T Consensus 1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r 75 (513)
T PRK00915 1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR 75 (513)
T ss_pred CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence 4778999999999999999999999999999999999999999999975321 24444433334556788888886
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHH----HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~----~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
... +++++++ ++|+++|++|.++||.|++.++|+|++++++++.+++++||
T Consensus 76 ~~~-------------------------~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak 130 (513)
T PRK00915 76 AVK-------------------------KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYAR 130 (513)
T ss_pred CCH-------------------------HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 543 3666666 78999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeC
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLH 355 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~H 355 (452)
++|++|. |++||.+|++++|+.++++.+.++|+++|+||||+|+++|.+++++|+.+++++|. ++|++|+|
T Consensus 131 ~~g~~v~------f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~H 204 (513)
T PRK00915 131 SYTDDVE------FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCH 204 (513)
T ss_pred HCCCeEE------EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEec
Confidence 9999986 77899999999999999999999999999999999999999999999999999985 78999999
Q ss_pred CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC----CCCCCCChhhHHHHHHHHHHHhC
Q 012949 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFINKHLG 431 (452)
Q Consensus 356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~----Gi~t~iDl~~L~~la~~v~~~~g 431 (452)
||+|||+||+++|+++||++||+|++|||| |+||++||+|+++|+.. |+++++|+++|.++++++++++|
T Consensus 205 ND~GlAvANslaAv~aGa~~Vd~Tv~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~ 278 (513)
T PRK00915 205 NDLGLAVANSLAAVEAGARQVECTINGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTG 278 (513)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 99999999999999753 99999999999999999999999
Q ss_pred CCCCCCcccccchhhhhccCC
Q 012949 432 RPSGSKTAIALNRIAADASKI 452 (452)
Q Consensus 432 ~~~p~~~pi~G~~vf~h~Sgi 452 (452)
+++|+++|++|+++|+|+|||
T Consensus 279 ~~~~~~~PivG~~aF~h~sGi 299 (513)
T PRK00915 279 MPVQPNKAIVGANAFAHESGI 299 (513)
T ss_pred CCCCCCCCccChhHHHhccch
Confidence 999999999999999999997
No 8
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=2.4e-63 Score=525.73 Aligned_cols=293 Identities=22% Similarity=0.313 Sum_probs=257.4
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc--CCceeEE
Q 012949 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE--GARLPVL 200 (452)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~--~~~l~~l 200 (452)
|++|+|+|||||||+|.+++.|+.++|++|++.|+++||++||+|||... |+ +.+. ++.+.. .. .....++
T Consensus 82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s---~~--e~e~-i~~i~~~~~~~~~~~~~l 155 (503)
T PLN03228 82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSS---EE--EFEA-VKTIAKTVGNEVDEETGY 155 (503)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---HH--HHHH-HHHHHHhccccccccccc
Confidence 67899999999999999999999999999999999999999999997532 21 2222 333322 11 1111111
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
.++ +.+|.|+.. +++++|+++ |+++|++++++||.|++.++|+|++++++++.+++++
T Consensus 156 ~~~-------i~a~~R~~~-----------~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~ 217 (503)
T PLN03228 156 VPV-------ICGIARCKK-----------RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRY 217 (503)
T ss_pred ceE-------EeeecccCH-----------hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 221 334555543 478888877 7789999999999999999999999999999999999
Q ss_pred HHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC---CccEEE
Q 012949 277 AKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAV 352 (452)
Q Consensus 277 Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p---~~~l~v 352 (452)
||++|+. |. |++||++|+|++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++| .++|++
T Consensus 218 Ak~~G~~~v~------f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~ 291 (503)
T PLN03228 218 AKSLGFHDIQ------FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSV 291 (503)
T ss_pred HHHcCCceEE------eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEe
Confidence 9999986 44 8899999999999999999999999999999999999999999999999999886 467999
Q ss_pred EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc------CCCCCCCChhhHHHHHHHH
Q 012949 353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFI 426 (452)
Q Consensus 353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~------~Gi~t~iDl~~L~~la~~v 426 (452)
|+|||+|||+||+++|+++||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++
T Consensus 292 H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V 365 (503)
T PLN03228 292 HCHNDLGLATANTIAGICAGARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMV 365 (503)
T ss_pred cccCCcChHHHHHHHHHHhCCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999987 4889999999999999999
Q ss_pred HHHhCCCCCCCcccccchhhhhccCC
Q 012949 427 NKHLGRPSGSKTAIALNRIAADASKI 452 (452)
Q Consensus 427 ~~~~g~~~p~~~pi~G~~vf~h~Sgi 452 (452)
++++|+++|+++|++|+|+|+|+|||
T Consensus 366 ~~~~g~~i~~~kPivG~naF~heSGI 391 (503)
T PLN03228 366 QEYTGMYVQPHKPIVGANCFVHESGI 391 (503)
T ss_pred HHHhCCCCCCCCCcccHHHHHhccch
Confidence 99999999999999999999999997
No 9
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=5.2e-63 Score=508.00 Aligned_cols=282 Identities=24% Similarity=0.308 Sum_probs=257.8
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchh
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLK 205 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~ 205 (452)
|.|+|||||||+|+++..|++++|++|++.|+++||+.||+|||++++ .+ .+.++.+. ...+.++.++++..
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~-----~~-~e~i~~i~~~~~~~~v~~~~r~~- 73 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE-----GE-FEAIKKISQEGLNAEICSLARAL- 73 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HH-HHHHHHHHhcCCCcEEEEEcccC-
Confidence 679999999999999999999999999999999999999999987653 12 22333333 23456666666432
Q ss_pred hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949 206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 285 (452)
Q Consensus 206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~ 285 (452)
.+++++|+++|++.|++|+++||.|++.++|+|++++++++.+++++||++|++|.
T Consensus 74 ------------------------~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 74 ------------------------KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred ------------------------HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 24999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 365 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa 365 (452)
+++ ++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+
T Consensus 130 ~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~ 202 (363)
T TIGR02090 130 FSA------EDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANS 202 (363)
T ss_pred EEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHH
Confidence 443 4678999999999999999999999999999999999999999999999988 689999999999999999
Q ss_pred HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccch
Q 012949 366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR 444 (452)
Q Consensus 366 LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~ 444 (452)
++|+++||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++|++|++
T Consensus 203 laA~~aGa~~vd~s~~GlGe------raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~ 276 (363)
T TIGR02090 203 IAGVKAGAEQVHVTVNGIGE------RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGEN 276 (363)
T ss_pred HHHHHCCCCEEEEEeecccc------ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHH
Confidence 99999999999999999999 9999999999999998 7999999999999999999999999999999999999
Q ss_pred hhhhccCC
Q 012949 445 IAADASKI 452 (452)
Q Consensus 445 vf~h~Sgi 452 (452)
+|+|+|||
T Consensus 277 ~f~h~sGi 284 (363)
T TIGR02090 277 AFAHESGI 284 (363)
T ss_pred HHHHhcch
Confidence 99999997
No 10
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=1.4e-62 Score=522.11 Aligned_cols=285 Identities=25% Similarity=0.359 Sum_probs=262.6
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchh
Q 012949 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLK 205 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~ 205 (452)
+|+|+|||||||+|.+++.|++++|++|++.|+++||++||+|||++++ .|.+.+....+...+.++.+|++..+
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~ 75 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE 75 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence 4899999999999999999999999999999999999999999998654 45555543335556778888876544
Q ss_pred hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949 206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS 281 (452)
Q Consensus 206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G 281 (452)
+++++++++ +.++|++|.++||.|++.++++|++++++++.+++++||++|
T Consensus 76 -------------------------~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g 130 (494)
T TIGR00973 76 -------------------------KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFT 130 (494)
T ss_pred -------------------------HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 377777766 778999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeCCCc
Q 012949 282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTY 358 (452)
Q Consensus 282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~Hnd~ 358 (452)
..|. |++||++|++++++.++++.+.++|+++|+||||+|+++|.+++++|+.+++++|. ++|++|+|||+
T Consensus 131 ~~v~------f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~ 204 (494)
T TIGR00973 131 DDVE------FSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDL 204 (494)
T ss_pred CeEE------EEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCC
Confidence 9876 77899999999999999999999999999999999999999999999999999874 57999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPS 434 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g~~~ 434 (452)
|||+||+++|+++||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++
T Consensus 205 GlAvANalaAv~aGa~~vd~tv~GlGE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v 278 (494)
T TIGR00973 205 GLAVANSLAAVQNGARQVECTINGIGE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPV 278 (494)
T ss_pred ChHHHHHHHHHHhCCCEEEEEeecccc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999 9999999999999974 489999999999999999999999999
Q ss_pred CCCcccccchhhhhccCC
Q 012949 435 GSKTAIALNRIAADASKI 452 (452)
Q Consensus 435 p~~~pi~G~~vf~h~Sgi 452 (452)
|+++|++|+++|+|+|||
T Consensus 279 ~~~~PivG~~aF~h~sGi 296 (494)
T TIGR00973 279 QPNKAIVGDNAFAHESGI 296 (494)
T ss_pred CCCCCcccHhHHHhccch
Confidence 999999999999999997
No 11
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=2e-62 Score=519.91 Aligned_cols=283 Identities=23% Similarity=0.322 Sum_probs=259.2
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecch
Q 012949 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNL 204 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~ 204 (452)
+|+|+|||||||+|.++..|++++|++|++.|+++||++||+|||++++ .|.+ .+..+. ...+.++.+|++..
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e-~v~~i~~~~~~~~i~a~~r~~ 75 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GERE-AIKAVTDEGLNAEICSFARAV 75 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHH-HHHHHHhcCCCcEEEeecccC
Confidence 4899999999999999999999999999999999999999999997654 2333 333333 22356666666543
Q ss_pred hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949 205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV 284 (452)
Q Consensus 205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V 284 (452)
. +++++++++|++.|+++.++||.|++.++++|++++++.+.+++++||+.|++|
T Consensus 76 ~-------------------------~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v 130 (488)
T PRK09389 76 K-------------------------VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV 130 (488)
T ss_pred H-------------------------HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 2 489999999999999999999999999999999999999999999999999998
Q ss_pred EEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949 285 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 364 (452)
Q Consensus 285 ~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN 364 (452)
+. +.++.++++++|+.++++.+.++|+++|+||||+|+++|.+++++++.++++++ ++|++|+|||+|||+||
T Consensus 131 ~~------~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvAN 203 (488)
T PRK09389 131 EL------SGEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVAN 203 (488)
T ss_pred EE------EEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHH
Confidence 74 345788999999999999999999999999999999999999999999999877 58999999999999999
Q ss_pred HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccc
Q 012949 365 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALN 443 (452)
Q Consensus 365 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~ 443 (452)
+++|+++||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++|++|+
T Consensus 204 alaAv~aGa~~Vd~Ti~GiGE------RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~ 277 (488)
T PRK09389 204 TLAALAAGADQVHVTINGIGE------RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGE 277 (488)
T ss_pred HHHHHHcCCCEEEEEcccccc------cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccH
Confidence 999999999999999999999 9999999999999998 599999999999999999999999999999999999
Q ss_pred hhhhhccCC
Q 012949 444 RIAADASKI 452 (452)
Q Consensus 444 ~vf~h~Sgi 452 (452)
++|+|+|||
T Consensus 278 ~aF~h~sGi 286 (488)
T PRK09389 278 NAFAHESGI 286 (488)
T ss_pred hHHHhcchh
Confidence 999999997
No 12
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=3.4e-62 Score=527.62 Aligned_cols=292 Identities=21% Similarity=0.326 Sum_probs=258.3
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHH-HhccC-CceeEE
Q 012949 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAV-RDLEG-ARLPVL 200 (452)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i-~~~~~-~~l~~l 200 (452)
|++|+|.|+|||||+|.++..|++++|++|++.|+++||++||+||| ++|+ |.+. ++.+ +.+.+ ....++
T Consensus 84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~------D~e~-vr~i~~~~~~~v~~~~~ 156 (632)
T PLN02321 84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD------DLEA-VKTIAKEVGNEVDEDGY 156 (632)
T ss_pred CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc------HHHH-HHHHHHhcccCCCcccc
Confidence 78899999999999999999999999999999999999999999996 5654 5555 4444 33222 111122
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
++ ++.+|.++.. +++++++++ ++ .+|++|+++||.|++.|+|+|++++++++.+++++
T Consensus 157 v~-------~i~a~~ra~~-----------~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~ 218 (632)
T PLN02321 157 VP-------VICGLSRCNK-----------KDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKY 218 (632)
T ss_pred ce-------eeeeehhccH-----------HhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 21 2334555432 488888887 33 48999999999999999999999999999999999
Q ss_pred HHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEE
Q 012949 277 AKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAV 352 (452)
Q Consensus 277 Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~v 352 (452)
||++|.. |. |++||++|++++|+.++++++.++||++|+|+||+|+++|.+++++|+.+++++|. ++|++
T Consensus 219 Ak~~G~~~v~------fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~v 292 (632)
T PLN02321 219 ARSLGCEDVE------FSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIIST 292 (632)
T ss_pred HHHcCCceEE------EecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 9999984 44 78999999999999999999999999999999999999999999999999999874 46999
Q ss_pred EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc------CCCCCCCChhhHHHHHHHH
Q 012949 353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFI 426 (452)
Q Consensus 353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~------~Gi~t~iDl~~L~~la~~v 426 (452)
|||||+|||+||+++|+++||++||+||+|||| |+||++||+|+++|+. +|+++++|+++|.++++++
T Consensus 293 H~HND~GlAvANslaAv~AGA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V 366 (632)
T PLN02321 293 HCQNDLGLSTANTLAGAHAGARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMV 366 (632)
T ss_pred EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999985 4789999999999999999
Q ss_pred HHHhCCCCCCCcccccchhhhhccCC
Q 012949 427 NKHLGRPSGSKTAIALNRIAADASKI 452 (452)
Q Consensus 427 ~~~~g~~~p~~~pi~G~~vf~h~Sgi 452 (452)
++++|+++|+++|++|+|+|+|+|||
T Consensus 367 ~~~~g~~v~~~kPiVG~naFaheSGI 392 (632)
T PLN02321 367 SEYTGMQVQPHKAIVGANAFAHESGI 392 (632)
T ss_pred HHHhCcCCCCCcccccccceehhcCc
Confidence 99999999999999999999999998
No 13
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-62 Score=505.16 Aligned_cols=285 Identities=28% Similarity=0.363 Sum_probs=255.1
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hcc---CCceeEE
Q 012949 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLE---GARLPVL 200 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~---~~~l~~l 200 (452)
++|+|.|+|||||+|+++..|+.++|++|++.|+++|+++||+|+|+++++.+++ .+.+. ... .+++.++
T Consensus 1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~------~~~i~~~~~~~~~~~~~~~ 74 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEF------VRAIAEKAGLFICALIAAL 74 (409)
T ss_pred CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHH------HHHHHHhcCcccchhhhhh
Confidence 3689999999999999999999999999999999999999999999877644322 22222 111 2222222
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
.+.. .+++++++++|+++|++|.++||.|++.++++|+++.++.+.+++++||++
T Consensus 75 ~~~~-------------------------~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~ 129 (409)
T COG0119 75 ARAI-------------------------KRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH 129 (409)
T ss_pred HHhH-------------------------HhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 2222 249999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcC
Q 012949 281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG 359 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~G 359 (452)
|+++++ ++++.++++++++.++++.+.++||++|+|+||+|+++|.+++++++.+++++| ..+|++|||||+|
T Consensus 130 g~~~~~------~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G 203 (409)
T COG0119 130 GLEVRF------SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLG 203 (409)
T ss_pred CCeEEE------EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcc
Confidence 988874 456778999999999999999999999999999999999999999999999998 4789999999999
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc---CCCCCCCChhhHHHHHHHHHHHhCCCCCC
Q 012949 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGS 436 (452)
Q Consensus 360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~---~Gi~t~iDl~~L~~la~~v~~~~g~~~p~ 436 (452)
||+||+++|+++||++||+||+|+|| |+||+++|+++++|.. +|+++++|+.+|.++++++++.+|.++|+
T Consensus 204 ~AvANslaAv~aGa~~v~~TvnGiGE------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~ 277 (409)
T COG0119 204 MAVANSLAAVEAGADQVEGTVNGIGE------RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPP 277 (409)
T ss_pred hHHHHHHHHHHcCCcEEEEeccccee------ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999 9999999999976653 67899999999999999999999999999
Q ss_pred CcccccchhhhhccCC
Q 012949 437 KTAIALNRIAADASKI 452 (452)
Q Consensus 437 ~~pi~G~~vf~h~Sgi 452 (452)
++|++|+|+|+|+|||
T Consensus 278 n~pivG~naFah~sGI 293 (409)
T COG0119 278 NKPIVGENAFAHESGI 293 (409)
T ss_pred CCCchhhHHHHhhcch
Confidence 9999999999999997
No 14
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=2.5e-61 Score=479.51 Aligned_cols=274 Identities=22% Similarity=0.282 Sum_probs=253.6
Q ss_pred EeCCccccCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEecC-CCC---CcccccCCHHHHHHHHHhccCCceeEEecch
Q 012949 130 VEVGPRDGLQNEKNTVPTGVKVELIRRL-VSSGLPVVEATSF-VSP---KWVPQLADARDVMEAVRDLEGARLPVLTPNL 204 (452)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~k~~i~~~L-~~~Gv~~IEvG~~-~s~---~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~ 204 (452)
+|+|||||+|.++..|++++|++|++.| +++||+.||+|+| ++| +++|++.|..++...+ .+.++.+|+|+.
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~---~~~~~~a~~~~~ 77 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLL---DRIEVLGFVDGD 77 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccc---cCcEEEEecCcH
Confidence 5999999999999999999999999997 7889999999999 687 6677765543333222 256777777764
Q ss_pred hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949 205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV 284 (452)
Q Consensus 205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V 284 (452)
+ ++++|+++|++.|++++++||.|++.|+|+|++++++++.+++++||++|++|
T Consensus 78 ~--------------------------~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v 131 (280)
T cd07945 78 K--------------------------SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV 131 (280)
T ss_pred H--------------------------HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE
Confidence 4 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949 285 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 364 (452)
Q Consensus 285 ~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN 364 (452)
+++++. |+||. +++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||
T Consensus 132 ~~~~~d-~~~~~--r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN 208 (280)
T cd07945 132 NIYLED-WSNGM--RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVAN 208 (280)
T ss_pred EEEEEe-CCCCC--cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHH
Confidence 999998 88876 789999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949 365 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 441 (452)
Q Consensus 365 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~ 441 (452)
+++|+++||++||+|++|||| |+||++||+++++|+. +|+++++|+++|.++++++++++|+++|+++||+
T Consensus 209 ~laA~~aGa~~vd~s~~GlGe------~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 209 VLAAVKAGIKGLHTTVNGLGE------RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred HHHHHHhCCCEEEEecccccc------cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 999999999999999999999 9999999999999964 8999999999999999999999999999999986
No 15
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=6.7e-61 Score=512.14 Aligned_cols=293 Identities=19% Similarity=0.241 Sum_probs=261.3
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh--ccCCceeE
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD--LEGARLPV 199 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~--~~~~~l~~ 199 (452)
+|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||. +|. |. +.++.+.+ +.++++.+
T Consensus 2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~------d~-~~~~~i~~~~l~~~~i~~ 74 (524)
T PRK12344 2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DT-EFFKRAKELKLKHAKLAA 74 (524)
T ss_pred CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh------HH-HHHHHHHHhCCCCcEEEE
Confidence 5778999999999999999999999999999999999999999999975 432 32 34555543 34677777
Q ss_pred EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949 200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 279 (452)
Q Consensus 200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~ 279 (452)
|.+..+..+. . ....++++++++|++.|++|.++||.|++.++|+|++++++++.+++++||+
T Consensus 75 ~~~~~~~~i~------~-----------~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~ 137 (524)
T PRK12344 75 FGSTRRAGVS------A-----------EEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA 137 (524)
T ss_pred EeeccccCCC------c-----------ccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7754331110 0 0123789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeeecCC---CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949 280 LSIPVRGYVSCVVGCP---VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 356 (452)
Q Consensus 280 ~G~~V~~~l~~~~g~p---~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn 356 (452)
+|++|+ |+++ ++++++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++ .++|++|+||
T Consensus 138 ~G~~v~------~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HN 210 (524)
T PRK12344 138 HGREVI------FDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHN 210 (524)
T ss_pred cCCeEE------EccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 999987 5556 67799999999999999999999999999999999999999999999998 4689999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CC--CCCCCChhhHHHHHHHHHHHhCCC
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LG--VETNVDLRKLMLAGDFINKHLGRP 433 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~G--i~t~iDl~~L~~la~~v~~~~g~~ 433 (452)
|+|||+||+++|+++||++||+|++|||| |+||++||+|+++|+. +| ++|++|+++|.++++++++++|++
T Consensus 211 D~GlA~ANslaAi~aGa~~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~ 284 (524)
T PRK12344 211 DSGCAVANSLAAVEAGARQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLA 284 (524)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 9999999999999975 57 458999999999999999999999
Q ss_pred CCCCcccccchhhhhccCC
Q 012949 434 SGSKTAIALNRIAADASKI 452 (452)
Q Consensus 434 ~p~~~pi~G~~vf~h~Sgi 452 (452)
+|+++|++|+|+|+|+|||
T Consensus 285 v~~~~pivG~~~F~h~SGi 303 (524)
T PRK12344 285 PDPHQPYVGASAFAHKGGI 303 (524)
T ss_pred CCCCCCeECcchhhhhccc
Confidence 9999999999999999998
No 16
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=6.1e-61 Score=515.72 Aligned_cols=294 Identities=17% Similarity=0.169 Sum_probs=265.9
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh--c-cCCceeE
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--L-EGARLPV 199 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~--~-~~~~l~~ 199 (452)
+.+.+.|+|+|||||+|.++..|++++|++|++.|+++||++||+|||++. + .|.+++.+.++. + .++++.+
T Consensus 23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s---~--~D~e~v~~i~~~~l~~~~~~i~a 97 (564)
T TIGR00970 23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS---Q--TDFDFVREIIEQGAIPDDVTIQV 97 (564)
T ss_pred cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhcCCCCCcEEEE
Confidence 567799999999999999999999999999999999999999999976543 1 577777777765 2 3678999
Q ss_pred EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949 200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH 275 (452)
Q Consensus 200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~ 275 (452)
|+++++ .++++++++ ++ +.|++|.++||.|++.++|+|++++++.+.++++
T Consensus 98 l~~~~~-------------------------~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~ 152 (564)
T TIGR00970 98 LTQSRE-------------------------ELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTK 152 (564)
T ss_pred EcCCch-------------------------hhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999876 256666665 44 4899999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHHCCc------CEEEEcCCcCCCcHHHHHHHHHHHHHhC
Q 012949 276 AAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPGTVVPMLEAVMAVV 345 (452)
Q Consensus 276 ~Ak~~G~~V~~~l----~~~~g~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~~v~~li~~l~~~~ 345 (452)
+||++|..+..++ -+.|+.+|.+|++++++.++++.+.++|+ ++|+|+||+|+++|.+++++|+.+++++
T Consensus 153 ~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~ 232 (564)
T TIGR00970 153 LVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNI 232 (564)
T ss_pred HHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhc
Confidence 9999987654332 34477888899999999999999999987 4999999999999999999999999988
Q ss_pred CC---ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHH
Q 012949 346 PV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422 (452)
Q Consensus 346 p~---~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~l 422 (452)
|. ++|++|||||+|||+||+++|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.++
T Consensus 233 ~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~ 306 (564)
T TIGR00970 233 AEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEI 306 (564)
T ss_pred CcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 74 45999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcccccchhhhhccCC
Q 012949 423 GDFINKHLGRPSGSKTAIALNRIAADASKI 452 (452)
Q Consensus 423 a~~v~~~~g~~~p~~~pi~G~~vf~h~Sgi 452 (452)
++++++++|+++|+++|++|+++|+|+|||
T Consensus 307 s~~v~~~~~~~i~~~~PivG~~aF~h~SGi 336 (564)
T TIGR00970 307 RRTVEYCNKIPVHERHPYGGDLVYTAFSGS 336 (564)
T ss_pred HHHHHHHhCCCCCCCCCchhhhHhhhccch
Confidence 999999999999999999999999999997
No 17
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=1.1e-60 Score=510.15 Aligned_cols=295 Identities=18% Similarity=0.196 Sum_probs=260.1
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHH-hccCCceeEEecc
Q 012949 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPVLTPN 203 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~ 203 (452)
.|+|+|||||||+|.++..|++++|++|++.|+++||++||+|||. +|+ |.+.+.+..+ .+.+.++.+|++.
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~------d~~~v~~i~~~~~~~~~i~~~~r~ 74 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANPK------DVQFFWQLKEMNFKNAKIVAFCST 74 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChH------HHHHHHHHHHhCCCCcEEEEEeee
Confidence 3899999999999999999999999999999999999999999874 554 3333333332 2335778888754
Q ss_pred hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949 204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP 283 (452)
Q Consensus 204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~ 283 (452)
.+..+. . -...++++++++|.+.|++|.++||.|++.++++|++++++++.+++++||++|.+
T Consensus 75 ~r~~~~-------~----------~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~ 137 (526)
T TIGR00977 75 RRPHKK-------V----------EEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE 137 (526)
T ss_pred cCCCCC-------C----------chHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 331100 0 01237899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949 284 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP 363 (452)
Q Consensus 284 V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A 363 (452)
|....+..| |++|++++|+.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|..+|++|||||+|||+|
T Consensus 138 V~~~~e~f~---D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvA 214 (526)
T TIGR00977 138 VIYDAEHFF---DGYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVA 214 (526)
T ss_pred EEEEeeeee---ecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHH
Confidence 874444322 66799999999999999999999999999999999999999999999999976699999999999999
Q ss_pred HHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCC--CCCChhhHHHHHHHHHHHhCCCCCCCccc
Q 012949 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVE--TNVDLRKLMLAGDFINKHLGRPSGSKTAI 440 (452)
Q Consensus 364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~--t~iDl~~L~~la~~v~~~~g~~~p~~~pi 440 (452)
|+++|+++||++||+|++|||| |+||++||+++++|.. +|++ +++|+++|.++++++++++|+++|+++|+
T Consensus 215 NslaAv~AGA~~Vd~TinGiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pi 288 (526)
T TIGR00977 215 NSLLAVEAGATMVQGTINGYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPY 288 (526)
T ss_pred HHHHHHHhCCCEEEEecccccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence 9999999999999999999999 9999999999999985 6776 79999999999999999999999999999
Q ss_pred ccchhhhhccCC
Q 012949 441 ALNRIAADASKI 452 (452)
Q Consensus 441 ~G~~vf~h~Sgi 452 (452)
+|+|+|+|+|||
T Consensus 289 vG~~aF~h~sGi 300 (526)
T TIGR00977 289 VGRSAFAHKGGV 300 (526)
T ss_pred cCcceeeeeccc
Confidence 999999999998
No 18
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=1.4e-60 Score=511.74 Aligned_cols=292 Identities=18% Similarity=0.144 Sum_probs=260.7
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHH-Hh-c--cCCce
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RD-L--EGARL 197 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i-~~-~--~~~~l 197 (452)
+.+++.|+|+|||||+|.++..|++++|++|++.|+++||++||+|||+ +.+.+ +.++.+ +. + .+..+
T Consensus 27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~-------~s~~e~e~v~~i~~~~~~~~~~~i 99 (552)
T PRK03739 27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPS-------ASQTDFDFVRELIEEGLIPDDVTI 99 (552)
T ss_pred cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC-------cChHHHHHHHHHHHhcCCCCCCEE
Confidence 6677999999999999999999999999999999999999999999854 44443 555555 33 2 36788
Q ss_pred eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHH
Q 012949 198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAV 273 (452)
Q Consensus 198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~ 273 (452)
.+|+|+++ .++++|+++ ++ +.|++|+++||.|++.++|+|++++++++.++
T Consensus 100 ~~l~r~~~-------------------------~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~ 154 (552)
T PRK03739 100 QVLTQARE-------------------------HLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDG 154 (552)
T ss_pred EEEeccch-------------------------hHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 89998876 367777765 33 47999999999999999999999999999999
Q ss_pred HHHHHhCCCcEE-EEEEeeecCCCCCCCCHHHHHHHHHHHHH---CCcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949 274 AHAAKVLSIPVR-GYVSCVVGCPVEGAIPPSKVAYVAKELHD---MGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 274 v~~Ak~~G~~V~-~~l~~~~g~p~~~r~d~e~l~~~a~~l~~---~Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p 346 (452)
+++||++|.... ..+.+.|+.+|++|++++|+.++++.+.+ +|++ +|.|+||+|+++|.+++++++.+++.+|
T Consensus 155 v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~ 234 (552)
T PRK03739 155 ARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLA 234 (552)
T ss_pred HHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCC
Confidence 999999985321 11334478999999999999999999886 4655 5999999999999999999999999987
Q ss_pred ---CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHH
Q 012949 347 ---VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG 423 (452)
Q Consensus 347 ---~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la 423 (452)
.++|++|||||+|||+||+++|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.+++
T Consensus 235 ~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s 308 (552)
T PRK03739 235 RRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIR 308 (552)
T ss_pred cccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 678999999999999999999999999999999999999 99999999999999888999999999999999
Q ss_pred HHHHHHhCCCCCCCcccccchhhhhccCC
Q 012949 424 DFINKHLGRPSGSKTAIALNRIAADASKI 452 (452)
Q Consensus 424 ~~v~~~~g~~~p~~~pi~G~~vf~h~Sgi 452 (452)
+++++++|+++|+++|++|+|+|+|+|||
T Consensus 309 ~~v~~~~~~~i~~~~PivG~~aF~hesGi 337 (552)
T PRK03739 309 RTVEYCNQLPVHPRHPYAGDLVFTAFSGS 337 (552)
T ss_pred HHHHHHhCCCCCCCCCccchhhhhhccch
Confidence 99999999999999999999999999997
No 19
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-59 Score=468.21 Aligned_cols=294 Identities=16% Similarity=0.139 Sum_probs=248.1
Q ss_pred hHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh
Q 012949 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD 191 (452)
Q Consensus 112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~ 191 (452)
-|.-..|.+.. ...|+|+|||||+|.++..|+.++|++|++.|+++||+.||+|||+... .|.+.+.+.++.
T Consensus 21 ~~~w~~~~~~~---~p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~ 92 (333)
T PRK14847 21 ERAWPARRPAA---APIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDE 92 (333)
T ss_pred cCCCcccccCC---CCceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHh
Confidence 34444444333 3459999999999999999999999999999999999999999986432 233333333333
Q ss_pred c---cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHH
Q 012949 192 L---EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIE 264 (452)
Q Consensus 192 ~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e 264 (452)
. .++++.+|++.++ +++++++++ +.++|++|+++||.|++.++|+|++
T Consensus 93 ~~~~~~~~i~~~~r~~~-------------------------~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~ 147 (333)
T PRK14847 93 RRIPDDVTIEALTQSRP-------------------------DLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRA 147 (333)
T ss_pred CCCCCCcEEEEEecCcH-------------------------HHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHH
Confidence 2 2467777777655 255555555 5567999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE-EEEeeecCCCCCCCCHHHHHHHHHHHHHC-C-----cCEEEEcCCcCCCcHHHHHHH
Q 012949 265 DSLVRYRAVAHAAKVLSIPVRG-YVSCVVGCPVEGAIPPSKVAYVAKELHDM-G-----CFEISLGDTIGVGTPGTVVPM 337 (452)
Q Consensus 265 ~~l~~~~~~v~~Ak~~G~~V~~-~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-G-----ad~I~L~DT~G~~~P~~v~~l 337 (452)
++++++.+.+++||++|....+ .+...|+.+|++|++++|+.++++.+.+. | +++|+|+||+|+++|.+++++
T Consensus 148 ~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~ 227 (333)
T PRK14847 148 EIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQ 227 (333)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHH
Confidence 9999999999999999652100 00112678899999999999999987665 4 778999999999999999999
Q ss_pred HHHHHHhCC---CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949 338 LEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV 414 (452)
Q Consensus 338 i~~l~~~~p---~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i 414 (452)
|+.++++++ .++|++|+|||+|||+||+++|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++
T Consensus 228 i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~i 301 (333)
T PRK14847 228 IEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGL 301 (333)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCc
Confidence 999999875 578999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhCCCCCCCcccccch
Q 012949 415 DLRKLMLAGDFINKHLGRPSGSKTAIALNR 444 (452)
Q Consensus 415 Dl~~L~~la~~v~~~~g~~~p~~~pi~G~~ 444 (452)
|+.+|.++++++++++|+++|+++|++|-+
T Consensus 302 d~~~l~~~~~~v~~~sg~~v~~~kPivg~~ 331 (333)
T PRK14847 302 DFRDMAALRACVSECNQLPIDVFHPYAWLD 331 (333)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCeecCC
Confidence 999999999999999999999999999954
No 20
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=4.1e-56 Score=437.24 Aligned_cols=255 Identities=24% Similarity=0.313 Sum_probs=234.0
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEecchhh
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLTPNLKV 206 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~~~~~~ 206 (452)
|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|. +.+.+ +.++.+.+ .+++++.++++..
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~-------~~~~~~e~~~~l~~~~~~~~~~~~~r~~-- 71 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPA-------MGEEEREAIRAIVALGLPARLIVWCRAV-- 71 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------CCHHHHHHHHHHHhcCCCCEEEEeccCC--
Confidence 6899999999999999999999999999999999999999754 33332 55555554 4567777776422
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 286 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~ 286 (452)
.+++++|.++|++.|++++++||.|++.|+|+|++++++++.+++++||++|++|.
T Consensus 72 -----------------------~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~- 127 (259)
T cd07939 72 -----------------------KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS- 127 (259)
T ss_pred -----------------------HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-
Confidence 24899999999999999999999999999999999999999999999999999876
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949 287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 366 (452)
Q Consensus 287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL 366 (452)
|++++.++++++++.++++++.++|++.|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||++
T Consensus 128 -----~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~l 201 (259)
T cd07939 128 -----VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTL 201 (259)
T ss_pred -----EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999 6899999999999999999
Q ss_pred HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHHHHHHH
Q 012949 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 367 aAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la~~v~~ 428 (452)
+|+++||++||+|++|||+ |+||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus 202 aAi~aG~~~vd~s~~G~G~------~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 202 AAVRAGATHVSVTVNGLGE------RAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred HHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999997 99999999999999999876
No 21
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=1.2e-55 Score=436.02 Aligned_cols=256 Identities=25% Similarity=0.348 Sum_probs=236.2
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh-ccCCceeEEecchhh
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKV 206 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~ 206 (452)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||+ +|+ | .+.++.+++ .+++++.+|++...
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~- 72 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVK- 72 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCH-
Confidence 6899999999999999999999999999999999999999987 443 3 345555554 57788888885332
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcC----CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAG----AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G----i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
+++++|.++| ++.|++++++||.|++.|+|+|++++++.+.+++++||++|+
T Consensus 73 ------------------------~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 128 (268)
T cd07940 73 ------------------------KDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL 128 (268)
T ss_pred ------------------------hhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3899999999 999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC--ccEEEEeCCCcCc
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQ 360 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~--~~l~vH~Hnd~Gl 360 (452)
+|. |++|+.++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++|+ ++|++|+|||+||
T Consensus 129 ~v~------~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~Gl 202 (268)
T cd07940 129 DVE------FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGL 202 (268)
T ss_pred eEE------EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcch
Confidence 876 67788999999999999999999999999999999999999999999999999986 7999999999999
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC----CCCCCChhhHHHHHHHHHH
Q 012949 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG----VETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G----i~t~iDl~~L~~la~~v~~ 428 (452)
|+||+++|+++||++||+|++|||+ |+||++||+|+.+|+.+| +++++|+++|.++++++++
T Consensus 203 A~An~laAi~aG~~~iD~s~~GlG~------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 203 AVANSLAAVEAGARQVECTINGIGE------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred HHHHHHHHHHhCCCEEEEEeecccc------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999 999999999999999876 9999999999999999863
No 22
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-55 Score=448.63 Aligned_cols=293 Identities=20% Similarity=0.251 Sum_probs=261.6
Q ss_pred CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE
Q 012949 122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL 200 (452)
Q Consensus 122 ~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l 200 (452)
..|+.+++.|+|||||+|+++.+|++++|++|+++|++.||++||+|||++.+ .|+++...+.+..+ ..+++++
T Consensus 53 ~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l 127 (560)
T KOG2367|consen 53 SDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTL 127 (560)
T ss_pred cCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEe
Confidence 35678999999999999999999999999999999999999999999998665 45555555555432 2455556
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
+|... .+|+ ..+|+...+.-.+|++|++.||+|++.++++|+||+++.+.++++.+|.+
T Consensus 128 ~rc~~--------------~di~-------~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvksl 186 (560)
T KOG2367|consen 128 IRCHM--------------DDIE-------RTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSL 186 (560)
T ss_pred eccch--------------HHHH-------HHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 55443 2222 14555555556679999999999999999999999999999999999999
Q ss_pred CC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeCC
Q 012949 281 SI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHD 356 (452)
Q Consensus 281 G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~Hn 356 (452)
|. .++ |++|+.+|++++|+.+++++..++|+.++.|+||+|+.+|.+++++|+.++.+.|+ +-|+.||||
T Consensus 187 g~~~ie------FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHN 260 (560)
T KOG2367|consen 187 GKWDIE------FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHN 260 (560)
T ss_pred ccceEE------ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecC
Confidence 95 455 99999999999999999999999999999999999999999999999999999886 358999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC---CCCCCChhhHHHHHHHHHHHhCCC
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG---VETNVDLRKLMLAGDFINKHLGRP 433 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G---i~t~iDl~~L~~la~~v~~~~g~~ 433 (452)
|+|+|+||++.+++|||++||+||+|+|| |+||++||+|+++|...| +...+|+.+|.++.++++++.+++
T Consensus 261 D~G~a~Ant~~g~~AGA~~VE~~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~ 334 (560)
T KOG2367|consen 261 DLGCATANTELGLLAGARQVEVTINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGIN 334 (560)
T ss_pred CccHHHHHHHHHhhcCcceEEEEeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999 999999999999999888 888999999999999999999999
Q ss_pred CCCCcccccchhhhhccCC
Q 012949 434 SGSKTAIALNRIAADASKI 452 (452)
Q Consensus 434 ~p~~~pi~G~~vf~h~Sgi 452 (452)
+|+++|++|.++|+|+|||
T Consensus 335 v~p~~pi~G~~~Fth~SGi 353 (560)
T KOG2367|consen 335 VPPHKPIVGANAFTHESGI 353 (560)
T ss_pred CCCCCccccceeEeecccc
Confidence 9999999999999999997
No 23
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=8.6e-55 Score=428.91 Aligned_cols=259 Identities=20% Similarity=0.230 Sum_probs=228.4
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhh
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKV 206 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~ 206 (452)
++|+|||||||+|.++..|++++|++|++.|+++||+.||+|+| +..|++++..+.+..+ ....++.++.+.
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~~~l~~~--~~~~~v~~~~r~--- 72 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSP---AASPQSRADCEAIAKL--GLKAKILTHIRC--- 72 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHHHHHHhC--CCCCcEEEEecC---
Confidence 47999999999999999999999999999999999999999985 4456654443333221 112334333321
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 286 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~ 286 (452)
..+++++|.++|++.|++++++||.|++.|+|++++++++.+.+++++||+.|++|.+
T Consensus 73 ----------------------~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~ 130 (262)
T cd07948 73 ----------------------HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRF 130 (262)
T ss_pred ----------------------CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1249999999999999999999999999999999999999999999999999999998
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949 287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 366 (452)
Q Consensus 287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL 366 (452)
+++.+ ++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++.+| ++|++|+|||+|||+||++
T Consensus 131 ~~eda------~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~ 203 (262)
T cd07948 131 SSEDS------FRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAY 203 (262)
T ss_pred EEEee------CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHH
Confidence 77755 4667899999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC---CCCCCCChhhHHHHHHHHHH
Q 012949 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 367 aAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~---Gi~t~iDl~~L~~la~~v~~ 428 (452)
+|+++||++||+|++|||+ |+||++||+|+.+|+.. |+++++|+++|.++++++++
T Consensus 204 ~a~~aG~~~vd~s~~GlGe------raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 204 AALEAGATHIDTTVLGIGE------RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred HHHHhCCCEEEEecccccc------ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999 99999999999999753 67789999999999999864
No 24
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=1e-54 Score=432.34 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=234.4
Q ss_pred EEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHH-Hhc---cCCceeEEec
Q 012949 128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RDL---EGARLPVLTP 202 (452)
Q Consensus 128 ~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i-~~~---~~~~l~~l~~ 202 (452)
.++|+|||||+|+++..|++++|++|+++|+++||+.||+|| |++.+.+ ++++.+ +.. .++++.+|+|
T Consensus 3 ~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf-------P~~~~~e~e~~~~i~~~~~~~~~~~~~al~r 75 (284)
T cd07942 3 IWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGF-------PSASQTDFDFVRELIEEDLIPDDVTIQVLTQ 75 (284)
T ss_pred cccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 468999999999999999999999999999999999999996 5566666 677777 331 3678889998
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CCC--EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~--~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+.+ .++++|+++ |++ .|++++++||.|++.|+|+|++|+++.+.+++++||
T Consensus 76 ~~~-------------------------~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~ 130 (284)
T cd07942 76 ARE-------------------------DLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVK 130 (284)
T ss_pred CCh-------------------------hhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 876 368999987 665 799999999999999999999999999999999999
Q ss_pred hCCCcE-EEEEEeeecCCCCCCCCHHHHHHHHHHHHHC---CcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCCC---c
Q 012949 279 VLSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPV---E 348 (452)
Q Consensus 279 ~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~ 348 (452)
++|++. ...+-+.|+.+|++|++++++.++++.+.++ |++ +|+|+||+|+++|.+++++++.+++.+|. +
T Consensus 131 ~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~ 210 (284)
T cd07942 131 ELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESV 210 (284)
T ss_pred HhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCc
Confidence 999762 1122334677888899999999999999887 544 99999999999999999999999999874 4
Q ss_pred cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949 349 KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~ 428 (452)
+|++|+|||+|||+||+++|+++||++||+|++|+|+ |+||++||+|+++|+.+|+++++|+++|.++++++++
T Consensus 211 ~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 211 IISLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 6999999999999999999999999999999999999 9999999999999999999999999999999999864
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=1.4e-53 Score=416.69 Aligned_cols=264 Identities=40% Similarity=0.582 Sum_probs=247.7
Q ss_pred EeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhh
Q 012949 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVIL 208 (452)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i 208 (452)
+|||||||+|++++.|++++|+++++.|+++||++||+|++.+++++|++.|.+++++.+++. ++.++.+|+++..
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~--- 77 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNRE--- 77 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCch---
Confidence 599999999999999999999999999999999999999999888889999988888888764 3788888887632
Q ss_pred hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949 209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 288 (452)
Q Consensus 209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l 288 (452)
++++.+.++|++.|+++++.||.|.+.|+++++++.++.+.+.++++|+.|+++.+++
T Consensus 78 ----------------------~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 78 ----------------------KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred ----------------------hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3899999999999999999999999999999999999999999999999999999888
Q ss_pred EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
+.+++| ..+++++.++++.+.++|++.|+|+||+|.++|+++.++++.+++.+|+++|++|+|||+|||+||+++|
T Consensus 136 ~~~~~~----~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA 211 (265)
T cd03174 136 EDAFGC----KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAA 211 (265)
T ss_pred EeecCC----CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHH
Confidence 876533 3789999999999999999999999999999999999999999999997899999999999999999999
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949 369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~ 428 (452)
+++||++||+|++|||+ |+||++||+++.+|+..|+++++|+++|.++++++++
T Consensus 212 ~~aG~~~id~s~~G~G~------~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 212 LEAGADRVDGSVNGLGE------RAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred HHcCCCEEEeccccccc------cccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999 9999999999999999999999999999999998863
No 26
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=3e-53 Score=421.07 Aligned_cols=256 Identities=21% Similarity=0.260 Sum_probs=226.2
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSG-----LPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL 200 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~G-----v~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l 200 (452)
|+|+|+|||||+|.++.. ++++|++|++.|.++| |+.||++++++ +|.+++.+.++... ...+.++
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~ 72 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW 72 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence 689999999999999885 9999999999999999 99999987643 47777777775421 2334443
Q ss_pred e-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949 201 T-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 279 (452)
Q Consensus 201 ~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~ 279 (452)
. ++. +++++|+++|++.|.+++++||.|++.|+|+|++++++++.+++++||+
T Consensus 73 ~r~~~--------------------------~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~ 126 (279)
T cd07947 73 IRANK--------------------------EDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD 126 (279)
T ss_pred ecCCH--------------------------HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 3 333 4999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeeecCCCCCCCCHH-----HHHHHHHHHHHCCcC-EEEEcCCcCCCcH-------HHHHHHHHHHHHh--
Q 012949 280 LSIPVRGYVSCVVGCPVEGAIPPS-----KVAYVAKELHDMGCF-EISLGDTIGVGTP-------GTVVPMLEAVMAV-- 344 (452)
Q Consensus 280 ~G~~V~~~l~~~~g~p~~~r~d~e-----~l~~~a~~l~~~Gad-~I~L~DT~G~~~P-------~~v~~li~~l~~~-- 344 (452)
+|+.|++++ ++.+|.+++ ++.++++.+.++|++ +|+|+||+|+++| .+++++++.++++
T Consensus 127 ~g~~v~~~~------ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~ 200 (279)
T cd07947 127 HGIKPRCHL------EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCG 200 (279)
T ss_pred CCCeEEEEE------EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcC
Confidence 999998666 456777663 677777777779999 8999999999988 6899999999998
Q ss_pred CCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHH
Q 012949 345 VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAG 423 (452)
Q Consensus 345 ~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la 423 (452)
+|.++|++|+|||+|||+||+++|+++||++||+|++|||+ |+||++||+++++|+.+ |+++++|+++|.+++
T Consensus 201 ~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~ 274 (279)
T cd07947 201 VPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIA 274 (279)
T ss_pred CCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 56678999999999999999999999999999999999999 99999999999999997 999999999999999
Q ss_pred HHHHH
Q 012949 424 DFINK 428 (452)
Q Consensus 424 ~~v~~ 428 (452)
+++++
T Consensus 275 ~~~~~ 279 (279)
T cd07947 275 EYFEK 279 (279)
T ss_pred HHHhC
Confidence 99763
No 27
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=1.5e-52 Score=415.38 Aligned_cols=267 Identities=21% Similarity=0.267 Sum_probs=232.3
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhc--cCCceeEEecchh
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLK 205 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~~~~~ 205 (452)
|+|||||||+|++++.|++++|++|++.|+++||++||+|++ ++|+.+ +.++.++++ +++++.++.+...
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDT-------EFFARAKKLKLKHAKLAAFGSTRR 73 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHH-------HHHHHHHHcCCCCcEEEEEecccc
Confidence 689999999999999999999999999999999999999995 455422 234555443 3677776664332
Q ss_pred hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949 206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 285 (452)
Q Consensus 206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~ 285 (452)
..+ .. ....++++++++|++.|+++.++||.|++.++|+|++++++++.+++++||+.|++|.
T Consensus 74 ~~i------~~-----------~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 136 (273)
T cd07941 74 AGV------KA-----------EEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI 136 (273)
T ss_pred cCC------Cc-----------cchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 111 00 0123789999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 365 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa 365 (452)
++.+. | .+.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+
T Consensus 137 ~~~~~-~--~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~ 213 (273)
T cd07941 137 FDAEH-F--FDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANS 213 (273)
T ss_pred EeEEe-c--cccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHH
Confidence 76443 3 35568899999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH-cCCCC--CCCChhhHHHHHHHHHH
Q 012949 366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS-GLGVE--TNVDLRKLMLAGDFINK 428 (452)
Q Consensus 366 LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~-~~Gi~--t~iDl~~L~~la~~v~~ 428 (452)
++|+++||++||+|++|||| |+||++||+++.+|+ .+|++ +++|+++|.++++++++
T Consensus 214 laA~~aGa~~id~s~~GlGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 214 LAAVEAGATQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred HHHHHcCCCEEEEecccccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999999 999999999999998 46765 48999999999999863
No 28
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=4.8e-52 Score=409.28 Aligned_cols=254 Identities=26% Similarity=0.329 Sum_probs=226.8
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCCcccccCCHHHHHHHHH-hccCCceeEE
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVPQLADARDVMEAVR-DLEGARLPVL 200 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l 200 (452)
|+|+|||||||+|.+++.|++++|+++++.|+++||++||+|++. +.++.|+..+.++.++.++ ..+++++.++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999999999999999999999642 3345566677777777774 4577888887
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
+.... ...+++++++++|++.|+++++.|+. ..+.+++++||+.
T Consensus 81 ~~~~~----------------------~~~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~ 124 (263)
T cd07943 81 LLPGI----------------------GTVDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKL 124 (263)
T ss_pred ecCCc----------------------cCHHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHC
Confidence 62211 12358999999999999999999985 3567889999999
Q ss_pred CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949 281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 360 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl 360 (452)
|++|.++++. .++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+||
T Consensus 125 G~~v~~~~~~------~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 125 GMDVVGFLMM------SHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred CCeEEEEEEe------ccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 9999988875 3678999999999999999999999999999999999999999999999866899999999999
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~ 428 (452)
|+||+++|+++||++||+|++|||+ |+||++||+++.+|+.+|+++++|+++|.++++++.+
T Consensus 199 A~AN~laAi~aGa~~vd~s~~GlG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 199 AVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred HHHHHHHHHHhCCCEEEeecccccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999999999999999765
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=5e-52 Score=411.99 Aligned_cols=263 Identities=22% Similarity=0.293 Sum_probs=235.9
Q ss_pred EEeCCccccCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEecCCC----CCcccccCCHHHHHHHHHh-ccCCceeEEec
Q 012949 129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVRD-LEGARLPVLTP 202 (452)
Q Consensus 129 I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s----~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~ 202 (452)
|+|||||||+|++ +..|++++|+++++.|+++||+.||+|+++. +++. ..+.++.++.+++ .+++++.+|++
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence 5899999999998 7889999999999999999999999998753 2222 2455666666654 57788888887
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
..+ +.+|..+|.++++. +++++.++|++.|+++++.|+ ++++.+.+++||++|+
T Consensus 79 ~~~-----~~~~~~~p~~~~~~-------di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 79 GQN-----LVGYRHYPDDVVEL-------FVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGK 132 (275)
T ss_pred ccc-----ccCccCCCcHHHHH-------HHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCC
Confidence 654 56777888776654 999999999999999999998 4788899999999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ 362 (452)
+|.+++++++ .++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+
T Consensus 133 ~v~~~i~~~~----~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~ 207 (275)
T cd07937 133 HVEGAICYTG----SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAV 207 (275)
T ss_pred eEEEEEEecC----CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHH
Confidence 9998888654 47899999999999999999999999999999999999999999999998 689999999999999
Q ss_pred HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
||+++|+++||++||+|++|||| |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus 208 aN~laA~~aGa~~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 208 ATYLAAAEAGVDIVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred HHHHHHHHhCCCEEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999876
No 30
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.1e-51 Score=431.89 Aligned_cols=292 Identities=20% Similarity=0.292 Sum_probs=258.8
Q ss_pred CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCc
Q 012949 123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGAR 196 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~ 196 (452)
|+++|.|+|+|||||.|+++ ..|+++++++|++.|+++|++.||+| |.+.-.+.. .|+++.++.+++ +++++
T Consensus 1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~--Edpwerlr~lr~~~~nt~ 78 (499)
T PRK12330 1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN--EDPWERLRTFRKLMPNSR 78 (499)
T ss_pred CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC--CCHHHHHHHHHHhCCCCe
Confidence 45679999999999999988 67999999999999999999999998 433222221 467777777764 68999
Q ss_pred eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
+++|+++.+ +++|.++++++++. ++++++++|++.||||+++||+ ++++.+++.
T Consensus 79 lqmL~Rg~N-----~vGy~~y~ddvv~~-------fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~ 132 (499)
T PRK12330 79 LQMLLRGQN-----LLGYRHYEDEVVDR-------FVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKA 132 (499)
T ss_pred EEEEEcccc-----cCCccCcchhHHHH-------HHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHH
Confidence 999999876 88999999999885 9999999999999999999995 667788999
Q ss_pred HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeC
Q 012949 277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLH 355 (452)
Q Consensus 277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~H 355 (452)
+|+.|..++++|+++.+ | ..+++++.++++++.++||++|+|+||+|.++|.+++++|+.+++++| +++|++|+|
T Consensus 133 vk~ag~~~~~~i~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 133 VKKVGKHAQGTICYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred HHHhCCeEEEEEEEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 99999999999998753 3 458999999999999999999999999999999999999999999996 789999999
Q ss_pred CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh-----
Q 012949 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL----- 430 (452)
Q Consensus 356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~----- 430 (452)
||+|||+||+++|+++||++||+|++|||+ |+||++||+++++|+.+|+++++|+++|.+++++++++.
T Consensus 209 nt~GlA~An~laAieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~ 282 (499)
T PRK12330 209 STTGVTLVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKE 282 (499)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 999999999999999999999999999999998887653
Q ss_pred ------CCCCCCCcc-cccchhhhhccCC
Q 012949 431 ------GRPSGSKTA-IALNRIAADASKI 452 (452)
Q Consensus 431 ------g~~~p~~~p-i~G~~vf~h~Sgi 452 (452)
+...+..++ +.|...|+|+|++
T Consensus 283 ~~~~~~~~d~~v~~~qiPGGm~snl~~Ql 311 (499)
T PRK12330 283 FESKTTGVETEIFKSQIPGGMLSNMESQL 311 (499)
T ss_pred ccccccCCCCccccCCCCCCchhhHHHHH
Confidence 344555555 7888888887753
No 31
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.1e-51 Score=427.30 Aligned_cols=286 Identities=20% Similarity=0.267 Sum_probs=247.9
Q ss_pred CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~ 198 (452)
++|+|+|+|||||.|++ +..|++++|++|++.|+++||+.||++ |+++-.++. .++++.++.+++ +++++++
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~--e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN--EDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC--CCHHHHHHHHHHhCCCCEEE
Confidence 35999999999999998 457999999999999999999999998 332211111 356778888865 4889999
Q ss_pred EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+|++..+ +.+|.++++++++. ++++|+++|++.|++|+++||.+ ++.+++++||
T Consensus 80 ~l~r~~N-----~~G~~~~pddvv~~-------~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak 133 (448)
T PRK12331 80 MLLRGQN-----LLGYRNYADDVVES-------FVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATK 133 (448)
T ss_pred EEecccc-----ccccccCchhhHHH-------HHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHH
Confidence 8887665 78999999998774 99999999999999999999963 4667899999
Q ss_pred hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
++|+.++++++++++ .+++++++.++++++.++||++|+|+||+|.++|.+++++|++++++++ ++|++|+|||+
T Consensus 134 ~~G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~ 208 (448)
T PRK12331 134 KAGGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATS 208 (448)
T ss_pred HcCCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCC
Confidence 999999999998864 3678999999999999999999999999999999999999999999997 69999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC-----
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP----- 433 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~----- 433 (452)
|||+||+++|+++||++||+|++|+|+ |+||++||+++++|+.+|+++++|+++|.+++++++++...-
T Consensus 209 GlA~AN~laAieaGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y~~~~~ 282 (448)
T PRK12331 209 GIAEMTYLKAIEAGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHYREEGI 282 (448)
T ss_pred CcHHHHHHHHHHcCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999 999999999999999999999999999999999998764322
Q ss_pred CCCCcccccchhhhhc
Q 012949 434 SGSKTAIALNRIAADA 449 (452)
Q Consensus 434 ~p~~~pi~G~~vf~h~ 449 (452)
.++....+-.+++.|+
T Consensus 283 ~~~~~~~~~~~v~~~~ 298 (448)
T PRK12331 283 LNPKVKDVEPKTLIYQ 298 (448)
T ss_pred CCcccccCCcCeeecC
Confidence 2333334445566654
No 32
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.5e-50 Score=423.59 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=248.3
Q ss_pred ccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCceeE
Q 012949 126 FVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLPV 199 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~~ 199 (452)
+|+|+|||||||.|+++ ..|++++|++|++.|+++||+.||+|..+ +..++. .++++.++.+++ ++++++++
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~--e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN--ENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC--CCHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999985 67999999999999999999999996322 122221 356777887765 47899999
Q ss_pred EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949 200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 279 (452)
Q Consensus 200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~ 279 (452)
|++..+ +++|..+++++++. .+++|+++|++.|++|+++||. +++...+++||+
T Consensus 80 l~r~~N-----~~G~~~~~dDvv~~-------fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~ 133 (467)
T PRK14041 80 LLRGQN-----LVGYRHYADDVVEL-------FVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKK 133 (467)
T ss_pred Eecccc-----ccCcccccchhhHH-------HHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHH
Confidence 887654 67898888888775 8999999999999999999994 567888999999
Q ss_pred CCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949 280 LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 359 (452)
Q Consensus 280 ~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G 359 (452)
.|+.|+++++++++ | +.+++++.++++++.++||++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|
T Consensus 134 ~G~~v~~~i~~t~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~G 208 (467)
T PRK14041 134 HGAHVQGAISYTVS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTG 208 (467)
T ss_pred CCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCC
Confidence 99999999999885 4 567999999999999999999999999999999999999999999998 689999999999
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC--CCCCC
Q 012949 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSK 437 (452)
Q Consensus 360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~--~~p~~ 437 (452)
||+||+++|+++||++||+|++|+|+ |+||++||+++++|+.+|+++++|+++|.+++++++++... +.++.
T Consensus 209 lA~AN~laAieaGad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~ 282 (467)
T PRK14041 209 LASLAYLAAVEAGADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVG 282 (467)
T ss_pred cHHHHHHHHHHhCCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999987532 34444
Q ss_pred cccccchhhhhc
Q 012949 438 TAIALNRIAADA 449 (452)
Q Consensus 438 ~pi~G~~vf~h~ 449 (452)
.--+-.+++.|+
T Consensus 283 ~~~~~~~v~~~q 294 (467)
T PRK14041 283 MKSPDSRILVSQ 294 (467)
T ss_pred CCCCCcCeeeCC
Confidence 434445666664
No 33
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=1.9e-49 Score=403.60 Aligned_cols=256 Identities=27% Similarity=0.364 Sum_probs=225.0
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCC-cccccCCHHHHHHHH-HhccCCce
Q 012949 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAV-RDLEGARL 197 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~e~v~~~i-~~~~~~~l 197 (452)
++|+|+|||||||+|..++.|++++|++|++.|+++||++||+|+.. +-. ..|.. +.++.++.+ +..+++++
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~-~~~e~i~~~~~~~~~~~~ 80 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH-TDEEYIEAAAEVVKQAKI 80 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC-CHHHHHHHHHHhCCCCEE
Confidence 46999999999999999999999999999999999999999998532 111 12333 345556666 45678898
Q ss_pred eEEe-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 198 PVLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 198 ~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
.+|+ |+.. +.++++.|.++|++.|+++++.++. +.+.+.+++
T Consensus 81 ~~ll~pg~~-----------------------~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ 123 (337)
T PRK08195 81 AALLLPGIG-----------------------TVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGL 123 (337)
T ss_pred EEEeccCcc-----------------------cHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHH
Confidence 8865 5432 2359999999999999999988774 346788999
Q ss_pred HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-CCccEEEEeC
Q 012949 277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLH 355 (452)
Q Consensus 277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-p~~~l~vH~H 355 (452)
||++|++|.++++++ ++++++++.++++.+.++|++.|+|+||+|.++|.+++++++.+++++ |+++|++|+|
T Consensus 124 ak~~G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 124 ARELGMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred HHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999988863 678999999999999999999999999999999999999999999999 6789999999
Q ss_pred CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
||+|||+||+++|+++||++||+|+.|||+ |+||++||+++++|+.+|+++++|+++|.++++.+..-+
T Consensus 198 nnlGla~ANslaAi~aGa~~iD~Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~ 266 (337)
T PRK08195 198 NNLGLGVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPL 266 (337)
T ss_pred CCcchHHHHHHHHHHhCCCEEEecChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 999999999999999999999999999999999988765
No 34
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=1.5e-49 Score=392.52 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=219.7
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc----ccccCCHHHHHHHHH-hc-cCCceeEEec
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW----VPQLADARDVMEAVR-DL-EGARLPVLTP 202 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~----~p~~~D~e~v~~~i~-~~-~~~~l~~l~~ 202 (452)
|+|||||||+|.+++.|+.++|++|++.|+++||++||+||+.+... ...+.+. +.++.+. .. +++++.++++
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~ 79 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDD-EFLRRLLGDSKGNTKIAVMVD 79 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCH-HHHHHHHhhhccCCEEEEEEC
Confidence 58999999999999999999999999999999999999999865320 1112344 4455554 33 3788888886
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
..+. ..++++.+.++|++.|+++++.++ ++++.+++++||++|+
T Consensus 80 ~~~~----------------------~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~ 123 (266)
T cd07944 80 YGND----------------------DIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGY 123 (266)
T ss_pred CCCC----------------------CHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCC
Confidence 5431 234899999999999999987654 5888899999999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcH
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQS 361 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA 361 (452)
+|.++++++ ++++++++.++++.+.++|+++|+|+||+|.++|++++++++.++++++. ++|++|+|||+|||
T Consensus 124 ~v~~~~~~a------~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla 197 (266)
T cd07944 124 EVFFNLMAI------SGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLA 197 (266)
T ss_pred eEEEEEEee------cCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHH
Confidence 999888865 46889999999999999999999999999999999999999999999974 79999999999999
Q ss_pred HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHH-HHHHHHh
Q 012949 362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG-DFINKHL 430 (452)
Q Consensus 362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la-~~v~~~~ 430 (452)
+||+++|+++||++||+|++|||+ |+||++||+++++|+.+ +++++|+++|.+++ +++....
T Consensus 198 ~AN~laA~~aGa~~vd~s~~G~G~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 198 LANTLEAIELGVEIIDATVYGMGR------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred HHHHHHHHHcCCCEEEEecccCCC------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999988 78899999999999 7777654
No 35
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=3.6e-49 Score=400.90 Aligned_cols=257 Identities=26% Similarity=0.331 Sum_probs=224.1
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCC-cccccCCHHHHHHHHHhccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAVRDLEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~e~v~~~i~~~~~~~l~ 198 (452)
++|+|+|||||||+|..++.|++++|++|++.|+++||++||+|+.. +-. ..|...+.+.+.+..+.++++++.
T Consensus 1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 35999999999999999999999999999999999999999997431 111 123334445544455567788888
Q ss_pred EEe-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949 199 VLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA 277 (452)
Q Consensus 199 ~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A 277 (452)
+++ |+.. +.++++.|.++|++.|+++++.++. +.+.+.+++|
T Consensus 81 ~ll~pg~~-----------------------~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~a 123 (333)
T TIGR03217 81 VLLLPGIG-----------------------TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMA 123 (333)
T ss_pred EEeccCcc-----------------------CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHH
Confidence 765 5432 2359999999999999999988874 3457889999
Q ss_pred HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCC
Q 012949 278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHD 356 (452)
Q Consensus 278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hn 356 (452)
|++|++|.++++++ ++++++++.++++.+.++|++.|+|+||+|.++|.++.++++.++++++ +++|++|+||
T Consensus 124 k~~G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 124 RELGMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHcCCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 99999999988864 4789999999999999999999999999999999999999999999985 5799999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
|+|||+||+++|+++||++||+|+.|||+ ++||++||+++++|+.+|+++++|+.+|.++++.+-.-+
T Consensus 198 nlGla~ANslaAi~aGa~~iD~Sl~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~ 265 (333)
T TIGR03217 198 NLSLAVANSIAAIEAGATRIDASLRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL 265 (333)
T ss_pred CCchHHHHHHHHHHhCCCEEEeecccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999999999999999999999999998777655
No 36
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=5e-49 Score=425.33 Aligned_cols=286 Identities=22% Similarity=0.277 Sum_probs=255.8
Q ss_pred CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~ 198 (452)
++|.|+|||||||.|+++. .|++++|++|++.|+++|++.||++ |.++.++.. .|+++.++.+++ +++++++
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~--edp~e~l~~l~~~~~~~~l~ 79 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN--EDPWERLRKLKKALPNTPLQ 79 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC--ccHHHHHHHHHHhCCCCEEE
Confidence 4599999999999999974 7999999999999999999999998 333333221 355555565554 4789999
Q ss_pred EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+|++..+ +++|.++++++++. ++++|+++|++.|++|+++||. +++..++++||
T Consensus 80 ~l~Rg~N-----~~gy~~ypd~vv~~-------~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak 133 (592)
T PRK09282 80 MLLRGQN-----LVGYRHYPDDVVEK-------FVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAK 133 (592)
T ss_pred EEecccc-----ccccccccchhhHH-------HHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHH
Confidence 9987655 78999999998875 9999999999999999999995 56778899999
Q ss_pred hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
+.|..++++++++++ | .++++++.++++++.++|+++|+||||+|.++|.+++++++.++++++ ++|++|+|||.
T Consensus 134 ~~G~~v~~~i~~t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~ 208 (592)
T PRK09282 134 KAGAHVQGTISYTTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTS 208 (592)
T ss_pred HcCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCC
Confidence 999999999999874 4 468999999999999999999999999999999999999999999997 68999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC--CCC
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--SGS 436 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~--~p~ 436 (452)
|||+||+++|+++||++||+|++|+|+ |+||++||+++.+|+..|+++++|+++|.+++++++++.... +++
T Consensus 209 Gla~An~laAv~aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~ 282 (592)
T PRK09282 209 GLAPMTYLKAVEAGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFES 282 (592)
T ss_pred CcHHHHHHHHHHhCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999 999999999999999999999999999999999999987544 678
Q ss_pred Ccccccchhhhhc
Q 012949 437 KTAIALNRIAADA 449 (452)
Q Consensus 437 ~~pi~G~~vf~h~ 449 (452)
..+..+.++|.|+
T Consensus 283 ~~~~~~~~v~~~~ 295 (592)
T PRK09282 283 EFTIVDTRVLIHQ 295 (592)
T ss_pred ccccCCccEEEEc
Confidence 8888899999886
No 37
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.1e-48 Score=422.02 Aligned_cols=268 Identities=19% Similarity=0.257 Sum_probs=241.6
Q ss_pred CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCccccc-CCHHHHHHHHHh-ccCC
Q 012949 123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQL-ADARDVMEAVRD-LEGA 195 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~-~D~e~v~~~i~~-~~~~ 195 (452)
|.++|+|+|||||||.|++. ..|++++|+.|++.|+++|++.||++ |.+.- |.+ .|+++.++.+++ ++++
T Consensus 1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~---~~~~e~p~e~lr~l~~~~~~~ 77 (593)
T PRK14040 1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACI---RFLGEDPWERLRELKKAMPNT 77 (593)
T ss_pred CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhc---cccCCCHHHHHHHHHHhCCCC
Confidence 35679999999999999994 57999999999999999999999995 33321 222 366677777764 6889
Q ss_pred ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949 196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH 275 (452)
Q Consensus 196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~ 275 (452)
++++|+|+.+ +++|.++++++++. +++.|+++|++.||||++.||+ +++..+++
T Consensus 78 ~lqml~Rg~n-----~vg~~~ypddvv~~-------~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~ 131 (593)
T PRK14040 78 PQQMLLRGQN-----LLGYRHYADDVVER-------FVERAVKNGMDVFRVFDAMNDP--------------RNLETALK 131 (593)
T ss_pred eEEEEecCcc-----eeccccCcHHHHHH-------HHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHH
Confidence 9999998876 88999999998874 9999999999999999999984 67788999
Q ss_pred HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949 276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 355 (452)
Q Consensus 276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H 355 (452)
+||++|..++++|+++++ | ..+++++.++++.+.++||++|+|+||+|.++|.+++++|+.++++++ ++|++|+|
T Consensus 132 ~ak~~G~~~~~~i~yt~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~H 206 (593)
T PRK14040 132 AVRKVGAHAQGTLSYTTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCH 206 (593)
T ss_pred HHHHcCCeEEEEEEEeeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence 999999999999998763 3 347899999999999999999999999999999999999999999985 68999999
Q ss_pred CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
||.|||+||+++|++|||++||+|++|||+ |+||++||+++++|+.+|+++++|+++|.++++++.++.
T Consensus 207 nt~GlA~An~laAieAGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 207 ATTGLSTATLLKAIEAGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred CCCchHHHHHHHHHHcCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999875
No 38
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=2.7e-48 Score=418.65 Aligned_cols=264 Identities=20% Similarity=0.281 Sum_probs=238.2
Q ss_pred EEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCceeEEec
Q 012949 129 IVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP 202 (452)
Q Consensus 129 I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~ 202 (452)
|+|+|||||.|+++ ..|++++|++|++.|+++||+.||+| |.+...++. .|+++.++.+++ .+++++++|++
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~--e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN--EDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC--CCHHHHHHHHHHhCCCCEEEEEEc
Confidence 68999999999985 47999999999999999999999998 222212121 467788888875 68899999987
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
+.+ +++|..+++++++. ++++|+++|++.|++|+++||. +++...+++||++|+
T Consensus 79 g~N-----~~G~~~ypddvv~~-------~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~ 132 (582)
T TIGR01108 79 GQN-----LLGYRHYADDVVER-------FVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGA 132 (582)
T ss_pred ccc-----ccccccCchhhHHH-------HHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCC
Confidence 654 67899999998875 9999999999999999999994 567888999999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ 362 (452)
.|+++|++++ +| .++++++.++++++.++||++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+
T Consensus 133 ~v~~~i~~t~-~p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~ 207 (582)
T TIGR01108 133 HAQGTISYTT-SP---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAE 207 (582)
T ss_pred EEEEEEEecc-CC---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHH
Confidence 9999999876 55 368999999999999999999999999999999999999999999998 689999999999999
Q ss_pred HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhC
Q 012949 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG 431 (452)
Q Consensus 363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g 431 (452)
||+++|+++||++||+|++|||+ |+||++||+++++|+.+|+++++|+++|.+++++++++..
T Consensus 208 An~laAveaGa~~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 208 MALLKAIEAGADGIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred HHHHHHHHhCCCEEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999998754
No 39
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=5.8e-48 Score=404.01 Aligned_cols=288 Identities=18% Similarity=0.213 Sum_probs=250.4
Q ss_pred CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCc
Q 012949 123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGAR 196 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~ 196 (452)
+.++|+|+|+|||||.|+... .|++++++.+++.|+++|+..||++..+ .-.+. ..|+++.++.+++ +++++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl--~edpwerlr~~r~~~~nt~ 86 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFL--NEDPWERLRTLKKGLPNTR 86 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc--CCCHHHHHHHHHHhCCCCc
Confidence 345799999999999999765 4999999999999999999999996332 22211 2477777777774 78999
Q ss_pred eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
+++|+++.+ +++|..+++++++. .++.|++.|++.+|+|++.+|+ ++++.+++.
T Consensus 87 lqmLlRG~n-----~vgy~~ypddvv~~-------fv~~a~~~Gidi~Rifd~lnd~--------------~n~~~ai~~ 140 (468)
T PRK12581 87 LQMLLRGQN-----LLGYRHYADDIVDK-------FISLSAQNGIDVFRIFDALNDP--------------RNIQQALRA 140 (468)
T ss_pred eeeeecccc-----ccCccCCcchHHHH-------HHHHHHHCCCCEEEEcccCCCH--------------HHHHHHHHH
Confidence 999998765 88999999999885 7999999999999999999985 777899999
Q ss_pred HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949 277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 356 (452)
Q Consensus 277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn 356 (452)
+|+.|..++++++++. +| ..+.+++.++++++.++||++|+|+||+|.++|.+++++|+++++ .++++|++|+||
T Consensus 141 ak~~G~~~~~~i~yt~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hn 215 (468)
T PRK12581 141 VKKTGKEAQLCIAYTT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHA 215 (468)
T ss_pred HHHcCCEEEEEEEEEe-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCC
Confidence 9999999999999976 34 457899999999999999999999999999999999999999988 456799999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC-
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG- 435 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p- 435 (452)
|.|||+||+++|+++||++||+|++|+|+ ++||++||+++++|+..|+++++|+++|.+++++++++...-.|
T Consensus 216 t~GlA~An~laAieAGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~ 289 (468)
T PRK12581 216 TSGISQMTYLAAVEAGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYLAD 289 (468)
T ss_pred CCccHHHHHHHHHHcCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999 99999999999999999999999999999999999988654443
Q ss_pred ----CCcccccchhhhhc
Q 012949 436 ----SKTAIALNRIAADA 449 (452)
Q Consensus 436 ----~~~pi~G~~vf~h~ 449 (452)
+....+-.+++.|+
T Consensus 290 ~~~~~~~~~~d~~v~~hq 307 (468)
T PRK12581 290 GILDPSLLFPDPRTLQYQ 307 (468)
T ss_pred ccCCCccCCCCcceeeCC
Confidence 22223344556554
No 40
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.3e-48 Score=377.65 Aligned_cols=236 Identities=30% Similarity=0.421 Sum_probs=201.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhh
Q 012949 135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSIL 213 (452)
Q Consensus 135 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~ 213 (452)
|||.|+.++.|++++|++|++.|+++||++||+|++ .+++ +.+.+.+..+..++.++.++++...+.++
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~i~---- 70 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALPNARLQALCRANEEDIE---- 70 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHHSSEEEEEEESCHHHHH----
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhcccccceeeeehHHHHH----
Confidence 999999999999999999999999999999999954 3332 23333334444566788877755442221
Q ss_pred hhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 214 FQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 214 ~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
..++++.++|++.|+++++.||.|++.++++|++++++++.++++++|++|++|. |+
T Consensus 71 -----------------~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~ 127 (237)
T PF00682_consen 71 -----------------RAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FG 127 (237)
T ss_dssp -----------------HHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EE
T ss_pred -----------------HHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eC
Confidence 1466667799999999999999999999999999999999999999999999995 56
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
+++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa 207 (237)
T PF00682_consen 128 CEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGA 207 (237)
T ss_dssp ETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred ccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCC
Confidence 67889999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
++||+|+.|||+ |+||++||+++++|+.+|
T Consensus 208 ~~id~t~~GlG~------~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 208 DRIDGTLGGLGE------RAGNAPLEELVAALERMG 237 (237)
T ss_dssp SEEEEBGGGGSS------TTSB-BHHHHHHHHHHT-
T ss_pred CEEEccCccCCC------CCCCccHHHHHHHHhhcC
Confidence 999999999999 999999999999999875
No 41
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=7.2e-47 Score=406.74 Aligned_cols=286 Identities=18% Similarity=0.237 Sum_probs=252.0
Q ss_pred CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~ 198 (452)
++|.|+|+|||||.|+... .|++++.+.+++.|+++|+..||++..+ .-.+. ..|+++.++.+++ +++++++
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl--~edpwerl~~~r~~~pnt~lq 79 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFL--KEDPWSRLRQLRQALPNTQLS 79 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeeccc--CCCHHHHHHHHHHhCCCCceE
Confidence 3599999999999997664 6999999999999999999999998543 22211 2477888888874 7899999
Q ss_pred EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+|+++.+ +++|.++++++++. +++.|++.|+|.+|+|++.+|+ ++++..++.+|
T Consensus 80 mL~Rg~N-----~vGy~~~~d~vv~~-------~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k 133 (596)
T PRK14042 80 MLLRGQN-----LLGYRNYADDVVRA-------FVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIK 133 (596)
T ss_pred EEecccc-----ccccccCChHHHHH-------HHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHH
Confidence 9999876 89999999999986 8999999999999999999995 77788999999
Q ss_pred hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
+.|..+.++||++. +| .++++++.++++++.++||++|+|+||+|.++|.+++++|++++++++ ++|++|+|||+
T Consensus 134 ~~G~~~~~~i~yt~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~ 208 (596)
T PRK14042 134 SHKKHAQGAICYTT-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTS 208 (596)
T ss_pred HcCCEEEEEEEecC-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCC
Confidence 99999999999874 44 467999999999999999999999999999999999999999999986 69999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC--CCCC
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGS 436 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~--~~p~ 436 (452)
|||+||+++|+++||++||+|++|||+ ++||++||+++++|+.+|+++++|+++|.++++++.++... +.++
T Consensus 209 Gla~an~laAieaGad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~ 282 (596)
T PRK14042 209 GLASICHYEAVLAGCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFES 282 (596)
T ss_pred CcHHHHHHHHHHhCCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999 89999999999999999999999999999999999987632 2333
Q ss_pred Ccccccchhhhhc
Q 012949 437 KTAIALNRIAADA 449 (452)
Q Consensus 437 ~~pi~G~~vf~h~ 449 (452)
...-+-.+++.|+
T Consensus 283 ~~~~~~~~v~~hq 295 (596)
T PRK14042 283 EAQNIDPRVQLYQ 295 (596)
T ss_pred ccccCCcceeecC
Confidence 3333345666664
No 42
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=415.05 Aligned_cols=292 Identities=18% Similarity=0.197 Sum_probs=250.0
Q ss_pred CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHHC--CCCEEEEecCCCCC-ccccc-CCHHHHHHHHHh-ccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPK-WVPQL-ADARDVMEAVRD-LEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~-~~p~~-~D~e~v~~~i~~-~~~~~l~ 198 (452)
++|.|+|||||||.|++ +..|+++++++|++.|+++ |++.||+|+.+.-. .++.+ .|+++.++.+++ ++++.++
T Consensus 531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q 610 (1146)
T PRK12999 531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQ 610 (1146)
T ss_pred CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 57999999999999998 4789999999999999999 99999999743211 01111 467777887774 6899999
Q ss_pred EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+|+++.+ +++|.++++++++. ++++|+++|++.||||++.||+ +++..+++++|
T Consensus 611 ~l~Rg~n-----~vgy~~yp~~v~~~-------~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~vk 664 (1146)
T PRK12999 611 MLLRGSN-----AVGYTNYPDNVVRA-------FVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAVR 664 (1146)
T ss_pred EEecccc-----cccccCCCchHHHH-------HHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHHH
Confidence 9998876 88999999988763 7999999999999999999884 66788899999
Q ss_pred hCCCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949 279 VLSIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 356 (452)
Q Consensus 279 ~~G~~V~~~l~~~--~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn 356 (452)
+.|..+++.++++ +-.|....++++++.++++++.++|+++|+|+||+|.++|.+++++|+.+|++++ ++|++|+||
T Consensus 665 ~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hn 743 (1146)
T PRK12999 665 ETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPIHLHTHD 743 (1146)
T ss_pred HcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999888889886 1122223479999999999999999999999999999999999999999999995 689999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCC
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS 436 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~ 436 (452)
|+|||+||+++|+++||++||+|++|||+ ++||++||+++++|+..|+++++|+++|.+++++++++...-.|.
T Consensus 744 t~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~~ 817 (1146)
T PRK12999 744 TSGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAPF 817 (1146)
T ss_pred CCchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhcc
Confidence 99999999999999999999999999999 999999999999999999999999999999999999876544332
Q ss_pred Cccccc--chhhhhc
Q 012949 437 KTAIAL--NRIAADA 449 (452)
Q Consensus 437 ~~pi~G--~~vf~h~ 449 (452)
.....+ .+++.|+
T Consensus 818 ~~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 818 ESGLKSPTTEVYLHE 832 (1146)
T ss_pred CCCCCCCCcCeEEec
Confidence 222233 3466664
No 43
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=4.1e-43 Score=353.35 Aligned_cols=267 Identities=22% Similarity=0.314 Sum_probs=242.3
Q ss_pred CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949 125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLP 198 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~ 198 (452)
++|+|+|++||||.|+.-. ++++++.+.|++.|++.|+..+|++..+ .-++.. .|+++.++.+|+ +++++++
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn--EDPWeRLr~lk~~~~nT~LQ 81 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN--EDPWERLRELKKAVPNTKLQ 81 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc--CCHHHHHHHHHHhCCCcHHH
Confidence 5699999999999999876 5999999999999999999999997432 222222 477777777764 6889999
Q ss_pred EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
+|.++-+ ++||..+++++++. .++++++.|+|.+|||++.||. +++..+++.+|
T Consensus 82 MLlRGQN-----lvGYrhyaDDvVe~-------Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~k 135 (472)
T COG5016 82 MLLRGQN-----LVGYRHYADDVVEK-------FVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAK 135 (472)
T ss_pred HHHccCc-----cccccCCchHHHHH-------HHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHH
Confidence 9988866 89999999999885 8999999999999999999996 67788999999
Q ss_pred hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
++|.++++.+||+. +|.+ +.++++++++++.++|+|.|+|+|++|.++|...+++|+.+|+.++ ++|.+|+|.|-
T Consensus 136 k~G~h~q~~i~YT~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~Ts 210 (472)
T COG5016 136 KHGAHVQGTISYTT-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATS 210 (472)
T ss_pred hcCceeEEEEEecc-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEeccccc
Confidence 99999999999986 5665 5799999999999999999999999999999999999999999999 59999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
|||.++.++|++||||+||+++..+.+ +++++++|.++++|+..++++++|++.|.++++++.++-
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr 276 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR 276 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 899999999999999999999999999999999998654
No 44
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=2.2e-41 Score=343.43 Aligned_cols=281 Identities=19% Similarity=0.219 Sum_probs=247.1
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL 208 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i 208 (452)
|+|||||||.|..+..|++++|+++++.|+++|++.||+|++.. .|+..+..+++...+ ...++.++.++.
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~---- 71 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCR---- 71 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCC----
Confidence 68999999999999999999999999999999999999999643 233322222222222 122344444432
Q ss_pred hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949 209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 288 (452)
Q Consensus 209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l 288 (452)
..+++.+.+++++.+.++.+.|+.++..+++++.++++..+...+++|++.|+.+..++
T Consensus 72 ---------------------~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~ 130 (344)
T TIGR02146 72 ---------------------LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSA 130 (344)
T ss_pred ---------------------HHHHHHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 24889999999999999999999999999999999999999999999999999988666
Q ss_pred EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
+. ..+.+++++.++++.+.++|++.|+++||.|.++|.+++.+++.+++..|.+++++|+|||+|+|++|+++|
T Consensus 131 ~~------~~~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~a 204 (344)
T TIGR02146 131 ED------TFRSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNA 204 (344)
T ss_pred ee------CCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHH
Confidence 54 457889999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccchhhh
Q 012949 369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAA 447 (452)
Q Consensus 369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~vf~ 447 (452)
+.+||+++|+|++|||+ ++||+++|.++..|... |+. .+|++++.++++.+....+.++++++|++|.++|+
T Consensus 205 l~~ga~~~d~s~~glG~------~~G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~ 277 (344)
T TIGR02146 205 IEGGATIVDTTVLGIGE------RNGITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFT 277 (344)
T ss_pred HHcCCCEEEEEeeeeeC------CCCCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhh
Confidence 99999999999999999 88999999999988874 654 48999999999999999999999999999999999
Q ss_pred hccCC
Q 012949 448 DASKI 452 (452)
Q Consensus 448 h~Sgi 452 (452)
|+|||
T Consensus 278 ~~~g~ 282 (344)
T TIGR02146 278 HKAGI 282 (344)
T ss_pred cccch
Confidence 99996
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=4.5e-42 Score=392.61 Aligned_cols=305 Identities=15% Similarity=0.184 Sum_probs=258.9
Q ss_pred chhhHHHHH--------hhhcCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHC--CCCEEEEecCC----CC
Q 012949 109 DKDIRDITN--------KFLKGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEATSFV----SP 173 (452)
Q Consensus 109 ~~~~~~~~~--------~~~~~~p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~--Gv~~IEvG~~~----s~ 173 (452)
+..+|++.. |-+.+. ++|.|+|+|+|||.|+..++ +++++.+.+++.++++ |+..+|++..+ +.
T Consensus 506 ~~g~~~~~~~~g~~~~~~~~~~~-~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~ 584 (1143)
T TIGR01235 506 PRGTKQILDEKGPEGFAEWVRNQ-KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAM 584 (1143)
T ss_pred CCChHHHHHhhCHHHHHHHHHhc-CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHH
Confidence 467777665 223333 45999999999999999874 9999999999999994 99999997433 22
Q ss_pred CcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh
Q 012949 174 KWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE 252 (452)
Q Consensus 174 ~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd 252 (452)
++.. .|+++-++.+++ ++++.+++|.++.+ +++|..+++++++. .++.+++.|+|.+|||++.||
T Consensus 585 rfl~--EdPwerl~~~r~~~pn~~~qml~Rg~n-----~vgy~~ypd~vv~~-------f~~~~~~~GidifrifD~lN~ 650 (1143)
T TIGR01235 585 RFLH--EDPWERLEDLRKGVPNILFQMLLRGAN-----GVGYTNYPDNVVKY-------FVKQAAQGGIDIFRVFDSLNW 650 (1143)
T ss_pred HHhc--CCHHHHHHHHHHhCCCCceeeeecccc-----ccCccCCCHHHHHH-------HHHHHHHcCCCEEEECccCcC
Confidence 2221 477777777764 79999999999877 89999999999985 899999999999999999999
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC--CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc
Q 012949 253 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 330 (452)
Q Consensus 253 ~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 330 (452)
+ ++++.+++.+|+.|..++++|||+-.. |....++.+++.++++++.++|+++|+|+||+|.++
T Consensus 651 ~--------------~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~ 716 (1143)
T TIGR01235 651 V--------------ENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLK 716 (1143)
T ss_pred H--------------HHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcC
Confidence 5 788899999999999999999987211 122246899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 331 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 331 P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
|.+++++|+.+++++ +++|++|+|||+|||+||+++|+++||++||+|++|||+ +++++++|+++++|+..|+
T Consensus 717 P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~ 789 (1143)
T TIGR01235 717 PAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSER 789 (1143)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCC
Confidence 999999999999999 469999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhCC--CCCCCcccccchhhhhc
Q 012949 411 ETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAADA 449 (452)
Q Consensus 411 ~t~iDl~~L~~la~~v~~~~g~--~~p~~~pi~G~~vf~h~ 449 (452)
++++|+++|.+++++++++-.. +.++...-.-.+++.|+
T Consensus 790 ~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~v~~~~ 830 (1143)
T TIGR01235 790 DPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASEVYLHE 830 (1143)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcCeEEec
Confidence 9999999999999999986532 23333322233566654
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.97 E-value=2.1e-30 Score=277.02 Aligned_cols=290 Identities=18% Similarity=0.199 Sum_probs=246.0
Q ss_pred CccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHC--CCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCc
Q 012949 125 RFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGAR 196 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~--Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~ 196 (452)
+.+-++|+|+||+.|+.-++ +.+.+...|+...+++ ..-.+|.. |.++.+|+. .|+|+-++.+|+ ++++-
T Consensus 534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL~--EdPWeRL~~lRk~~PNvl 611 (1149)
T COG1038 534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFLK--EDPWERLERLRKAVPNVL 611 (1149)
T ss_pred cceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHhc--cCHHHHHHHHHHhCCchH
Confidence 56999999999999998764 9999999999999886 56667763 445544432 577888888874 78999
Q ss_pred eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
+++|.++.+ .++|+.+|+++|+. .++.|...|+|.+|||++.|.+ ++++-++.+
T Consensus 612 fQMLLRgaN-----~VgY~nyPDnVi~~-------Fvkqaa~~GIDvFRiFDsLNwv--------------~~M~vaidA 665 (1149)
T COG1038 612 FQMLLRGAN-----GVGYKNYPDNVIRE-------FVKQAAKSGIDVFRIFDSLNWV--------------EQMRVAIDA 665 (1149)
T ss_pred HHHHhcccc-----ccCcCCCchHHHHH-------HHHHHHhcCccEEEeehhhcch--------------hhhhhHHHH
Confidence 999888876 78899999999984 8899999999999999998874 777888999
Q ss_pred HHhCCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949 277 AKVLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL 354 (452)
Q Consensus 277 Ak~~G~~V~~~l~~~~g--~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~ 354 (452)
+++.|.-+.+++||+=. .|....++.+|+.++++++.++|+.++.++|++|.+.|...+.||.+||+.+ +.||++|.
T Consensus 666 V~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHT 744 (1149)
T COG1038 666 VREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHT 744 (1149)
T ss_pred HHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEec
Confidence 99999888999998621 1222347899999999999999999999999999999999999999999998 56999999
Q ss_pred CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949 355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS 434 (452)
Q Consensus 355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~ 434 (452)
||+-|.++|..++|++||||.||+++..|.+ -+.++++-.++++|.....++++|.+.+.+++.|++..-..-.
T Consensus 745 HDTsG~~~at~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~~Ya 818 (1149)
T COG1038 745 HDTSGNGVATYLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRKLYA 818 (1149)
T ss_pred cCCCccHHHHHHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999 9999999999999999888899999999999999997654333
Q ss_pred C--CCcccccchhhhhc
Q 012949 435 G--SKTAIALNRIAADA 449 (452)
Q Consensus 435 p--~~~pi~G~~vf~h~ 449 (452)
| +..+-.-..||.||
T Consensus 819 ~FEs~lkgp~~eVY~HE 835 (1149)
T COG1038 819 PFESGLKGPATEVYLHE 835 (1149)
T ss_pred hhhcCCCCCCcceeeee
Confidence 3 22222234566665
No 47
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.94 E-value=4.6e-26 Score=239.84 Aligned_cols=293 Identities=19% Similarity=0.192 Sum_probs=244.2
Q ss_pred CchhhHHHHH-----hhh---cCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHH--CCCCEEEEe----cCCC
Q 012949 108 NDKDIRDITN-----KFL---KGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVS--SGLPVVEAT----SFVS 172 (452)
Q Consensus 108 ~~~~~~~~~~-----~~~---~~~p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~--~Gv~~IEvG----~~~s 172 (452)
.++.+|++.- .|. .+.| ..-|+|+|+||..|+.-.+ +.+-+-..|+..-.. +|...+|.. |.++
T Consensus 534 pp~G~R~vLl~~GP~~FAk~VRn~~-g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVa 612 (1176)
T KOG0369|consen 534 PPKGWRDVLLEEGPEEFAKAVRNHP-GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVA 612 (1176)
T ss_pred CCccHHHHHHhhCHHHHHHHHhcCC-CceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHH
Confidence 4577777542 122 2333 3789999999999998764 888888888888766 578788864 3344
Q ss_pred CCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC
Q 012949 173 PKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS 251 (452)
Q Consensus 173 ~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S 251 (452)
.++.- .++|+-++.+++ ++++.+++|.++.+ -++|..+++++|-. ..+.|++.|+|.+|+|.+.+
T Consensus 613 mRFLh--EcPWeRL~~lRkliPNIPFQmLLRGAN-----avgYssyPDNviyk-------Fce~Ak~nGmDiFRVFDsLN 678 (1176)
T KOG0369|consen 613 MRFLH--ECPWERLRELRKLIPNIPFQMLLRGAN-----AVGYSSYPDNVIYK-------FCEQAKKNGMDIFRVFDSLN 678 (1176)
T ss_pred HHHHh--cChHHHHHHHHHhCCCCcHHHHhcccc-----cccccCCChhHHHH-------HHHHHHhcCcceeeehhhhh
Confidence 44321 356666666665 68888998887776 67899999999874 77999999999999999987
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC
Q 012949 252 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 329 (452)
Q Consensus 252 d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g--~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~ 329 (452)
+ ++++.--+++|++.|.-|.+.+||.-. .|--+.++.+++..+++.++++|...++|+|++|++
T Consensus 679 ~--------------lpnl~lGmeAagkAGGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~l 744 (1176)
T KOG0369|consen 679 Y--------------LPNLLLGMEAAGKAGGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVL 744 (1176)
T ss_pred h--------------hhhhhhhHhhhhccCCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhccc
Confidence 7 466666678999999999999998621 122235789999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 330 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 330 ~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
.|....-||..+|+++|++||++|.||+-|-|+|..+++.+||||.||+++..|.+ -+.++++-.+++-|+..-
T Consensus 745 KP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~ 818 (1176)
T KOG0369|consen 745 KPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTP 818 (1176)
T ss_pred CHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999 899999999999999877
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949 410 VETNVDLRKLMLAGDFINKHLGRPSG 435 (452)
Q Consensus 410 i~t~iDl~~L~~la~~v~~~~g~~~p 435 (452)
.+++++++.+.+.+.|+++.-..-.|
T Consensus 819 ~Dt~l~~~~v~eysaYWe~~R~LYap 844 (1176)
T KOG0369|consen 819 LDTGLNLEHVREYSAYWEQMRLLYAP 844 (1176)
T ss_pred ccCCCchHHHHHHHHHHHHHhhhhch
Confidence 99999999999999999987655444
No 48
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=98.64 E-value=9.7e-15 Score=148.41 Aligned_cols=140 Identities=13% Similarity=-0.017 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCC---------------CccEEEEeCCCcCcHHHHHHH
Q 012949 304 KVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVP---------------VEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p---------------~~~l~vH~Hnd~GlA~ANaLa 367 (452)
.+...++.+.+.|.+ .+.+.|+. ...|..+.++++.+...-| .+...+|+||+.|++++|++.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 344455666667765 77777875 4567888888877765322 234778999999999999999
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCC-CCCCChhhHHHHHHHHHHHhCCCCCCCcccccchh
Q 012949 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGV-ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445 (452)
Q Consensus 368 Al~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi-~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~v 445 (452)
+...|+..+..|+.|+|+ |+||++++ +..|.. .|. ++.+++..|..+..+....++..++..+|++|.+.
T Consensus 190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~ 261 (344)
T TIGR02146 190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG 261 (344)
T ss_pred ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999996 333332 343 23456666666666555456778899999999999
Q ss_pred hhhccCC
Q 012949 446 AADASKI 452 (452)
Q Consensus 446 f~h~Sgi 452 (452)
|+|.||+
T Consensus 262 ~~~~~~~ 268 (344)
T TIGR02146 262 VTIPFNN 268 (344)
T ss_pred CCCCCCC
Confidence 9999986
No 49
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.18 E-value=4.3e-05 Score=80.85 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
...+.++++++++.+.+.|++.||+|++... ....+.+..+++..+..+ ++...+ +++ +
T Consensus 11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~------~~~~~~i~~l~~~~~~~~--ii~D~k-----l~d--------~ 69 (430)
T PRK07028 11 DLLELDRAVEIAKEAVAGGADWIEAGTPLIK------SEGMNAIRTLRKNFPDHT--IVADMK-----TMD--------T 69 (430)
T ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH------HhhHHHHHHHHHHCCCCE--EEEEee-----ecc--------c
Confidence 3578999999999999999999999853210 111122333322211111 111111 000 0
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
-..+++.|+++|++.|++....++ ..+.++++++|+.|+.+...+ ++++ ++.
T Consensus 70 ------g~~~v~~a~~aGAdgV~v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~ 121 (430)
T PRK07028 70 ------GAIEVEMAAKAGADIVCILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV 121 (430)
T ss_pred ------hHHHHHHHHHcCCCEEEEecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH
Confidence 012789999999999998754332 123567889999999876321 1111 112
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+.++.+.++|+|.|.+. .|. ..+....+.++.+++.++ ++|.+|+ |....|+..++++||+.|=
T Consensus 122 ----e~~~~a~~~GaD~I~~~--pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 122 ----KRAVELEELGVDYINVH--VGIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred ----HHHHHHHhcCCCEEEEE--eccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 23566778899999764 232 112233467788877666 5899988 9999999999999998654
No 50
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.16 E-value=0.00032 Score=71.89 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++.++.++.+.+.|++.|-+.....|. .+ .....++++.+++. +++.+.++++.....+.+..++
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~-~~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~-------- 140 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPD-LG-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGL-------- 140 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCC--------
Confidence 4799999999999999999999996543332 11 00123445555432 2344333333210000000111
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEE--ecCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIF--ASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 298 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~--~s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~ 298 (452)
...+.++..+++|++.+.-. -..++...+.-. +.|.++. .++++.+++.|+++..+++ +| ..
T Consensus 141 -----~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~v~~~~i--iG-lg-- 206 (340)
T TIGR03699 141 -----SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLPTTATMM--FG-HV-- 206 (340)
T ss_pred -----CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeE--ee-CC--
Confidence 01357888999999977521 223444333322 3355544 5777999999999876666 44 22
Q ss_pred CCCHHHHHHHHHHHHHCCcCE------EEE----cCCc----CCCcHHHHHHHHHHHHHhCCCc-cEEEEeCCCcCcHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFE------ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLP 363 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~------I~L----~DT~----G~~~P~~v~~li~~l~~~~p~~-~l~vH~Hnd~GlA~A 363 (452)
-+++...+.++.+.+.+.+. |-+ .+|- ...+|.+...+++..|-.+|++ .|..-. ...| ..
T Consensus 207 -Et~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g--~~ 282 (340)
T TIGR03699 207 -ETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQG--KE 282 (340)
T ss_pred -CCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccC--hH
Confidence 24677778888888887654 221 2332 2467888999998888878863 122221 2233 34
Q ss_pred HHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc---HHHHHHHHHcCCCCC
Q 012949 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVA---TEDVVYMLSGLGVET 412 (452)
Q Consensus 364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaa---lE~vv~~L~~~Gi~t 412 (452)
....|+.+||+-+++++.. |. |.. .+|..+ +++++.+++.+|..+
T Consensus 283 ~~~~~l~~Gan~~~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~~ 330 (340)
T TIGR03699 283 VGQLALHFGANDFGSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFIP 330 (340)
T ss_pred HHHHHHhcCCccCCCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCCe
Confidence 4677999999998888763 11 111 244444 799999998887753
No 51
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.14 E-value=0.00065 Score=68.84 Aligned_cols=240 Identities=11% Similarity=0.107 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++.++.++...+.|++.|-+.....|..- .....++++.+++. +++.+.++++.-.. -+.+...
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~------~~~~~~g--- 103 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD--IEYYEELFRAIKQEFPDVHIHAFSPMEVY------FLAKNEG--- 103 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHH------HHHHHcC---
Confidence 589999999999999999999988754333210 11124455555543 34555555442110 0000000
Q ss_pred hhhhhccHHhHHHHHHcCCCEEE-EEe-cCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVA-IFA-SASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 298 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~-i~~-s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~ 298 (452)
....+.+++.+++|++.+. +.. ..++-..+... +.+.++. .++++.|++.|+++..+++ +|.+
T Consensus 104 ----~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~----l~~i~~a~~~Gi~~~s~~i--iG~~--- 170 (309)
T TIGR00423 104 ----LSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW----LEVIKTAHRLGIPTTATMM--FGHV--- 170 (309)
T ss_pred ----CCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--ecCC---
Confidence 0113468889999999874 221 12333222221 3354444 4778999999999987776 5544
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEE----E------cCCc-------CCCcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCc
Q 012949 299 AIPPSKVAYVAKELHDMGCFEIS----L------GDTI-------GVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQ 360 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~----L------~DT~-------G~~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~Gl 360 (452)
-+++...+.+..+.+.+.+... + .+|- ...+|.+...+++..|=.+|.++ +..-. .++|.
T Consensus 171 -Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~ 248 (309)
T TIGR00423 171 -ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGL 248 (309)
T ss_pred -CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCH
Confidence 2567777888878877654211 1 2442 23678888888888877777532 43322 44553
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 411 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~ 411 (452)
- -...|+.+||+-+++|+..====|.|....+ ....++++..++..|..
T Consensus 249 ~--~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~ 298 (309)
T TIGR00423 249 K--LAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV 298 (309)
T ss_pred H--HHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 2 2478899999999988742111112211223 46789999888877764
No 52
>PRK07094 biotin synthase; Provisional
Probab=98.07 E-value=0.00086 Score=68.05 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.+++..++.+. +..+..
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~-~~~g~~------------------ 127 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAIT-LSLGER------------------ 127 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEE-EecCCC------------------
Confidence 46899999999999999999998864332221 0 11223344444432233222 111111
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
..+.++...++|++.+.+..- .|+... ..+++. ...+...+.++.+++.|+.+..+++ +|.|.+ +.
T Consensus 128 -----~~e~l~~Lk~aG~~~v~~glEs~~~~~~-~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ 194 (323)
T PRK07094 128 -----SYEEYKAWKEAGADRYLLRHETADKELY-AKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TL 194 (323)
T ss_pred -----CHHHHHHHHHcCCCEEEeccccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CH
Confidence 235788899999999988653 333322 223321 2344555777999999999876666 555554 46
Q ss_pred HHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccE----EEEeCCCcCcHHHHHHHH
Q 012949 303 SKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l----~vH~Hnd~GlA~ANaLaA 368 (452)
+.+.+.++.+.+++++.+.+ ++| .....+.++..+++..|-.+|...| ++-++... -...+
T Consensus 195 ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~ 269 (323)
T PRK07094 195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKG 269 (323)
T ss_pred HHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHH
Confidence 88888899999999886654 111 1234667888889988888887433 33223222 23589
Q ss_pred HHcCCCEEeecccCC
Q 012949 369 LQMGISTVDCSVAGL 383 (452)
Q Consensus 369 l~aGa~~VD~Sv~Gl 383 (452)
+.+||+.+=+++..-
T Consensus 270 l~~Gan~~~~~~~~~ 284 (323)
T PRK07094 270 LKAGANVVMPNLTPG 284 (323)
T ss_pred HHcCCceecCCCCch
Confidence 999999776666543
No 53
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.03 E-value=0.00061 Score=70.05 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++.++.++.+.+.|++.|-+.....|. .+. .++++.+++. ++..+.+++|.- .. |....
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~-----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~e--i~-----~~~~~- 135 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPD-----LDGDFYLDILRAVKEEVPGMHIHAFSPME--VY-----YGARN- 135 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-----CCHHHHHHHHHHHHHHCCCceEEecCHHH--HH-----HHHHH-
Confidence 4799999999999999999999887443332 123 3445555542 445554433210 00 00000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-----hhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-----SNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-----~~~~-~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
.. ....+.+++.+++|++.+.. ...+.+.. ...+ .+.++. .+.++.|+++|+++.+.++ +|
T Consensus 136 --~g---~~~~e~l~~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~~~~~~~~----~~~i~~a~~~Gi~v~s~~i--~G 202 (343)
T TIGR03551 136 --SG---LSVEEALKRLKEAGLDSMPG--TAAEILDDEVRKVICPDKLSTAEW----IEIIKTAHKLGIPTTATIM--YG 202 (343)
T ss_pred --cC---CCHHHHHHHHHHhCcccccC--cchhhcCHHHHHhcCCCCCCHHHH----HHHHHHHHHcCCcccceEE--Ee
Confidence 00 01235788899999998762 11232221 1111 244433 4778999999999987666 55
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCE------EEEc----CCc--------CCCcHHHHHHHHHHHHHhCCCc--cEEEE
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFE------ISLG----DTI--------GVGTPGTVVPMLEAVMAVVPVE--KLAVH 353 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~------I~L~----DT~--------G~~~P~~v~~li~~l~~~~p~~--~l~vH 353 (452)
.+ + +.+...+.+..+.+++.+. |-++ .|- ..++|.+...+|+..|=.+|.. .|..-
T Consensus 203 ~~-E---t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~ 278 (343)
T TIGR03551 203 HV-E---TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQAS 278 (343)
T ss_pred cC-C---CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeecc
Confidence 43 3 4577777777777766542 2222 332 2357888889888888777863 44444
Q ss_pred eCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET 412 (452)
Q Consensus 354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~t 412 (452)
. .++|.. -...++.+||+-+++|+..==-=|.|....+ ...+++++.+.+..|..+
T Consensus 279 ~-~~l~~~--~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 279 W-VKLGKK--LAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred c-cccCHH--HHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 4 344433 3488899999999988754100011111232 347799999998887653
No 54
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.03 E-value=0.00056 Score=67.83 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHHhcc----CCceeEEe-cchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVRDLE----GARLPVLT-PNLK 205 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~~~~----~~~l~~l~-~~~~ 205 (452)
..+.+.-.++++.|.+.|++.||+|+|-| |- -.|.. .+.+.+++.++++. +..+..|+ -|.-
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi 99 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLI 99 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence 35788899999999999999999998754 31 01111 01234455554432 22222121 1110
Q ss_pred hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949 206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 285 (452)
Q Consensus 206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~ 285 (452)
| +....+.++.++++|++.|-+.+-. ++...+.++.+|++|+...
T Consensus 100 --------~-----------~~G~e~f~~~~~~aGvdgviipDlp----------------~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 100 --------F-----------RKGVEEFYAKCKEVGVDGVLVADLP----------------LEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred --------h-----------hhhHHHHHHHHHHcCCCEEEECCCC----------------hHHHHHHHHHHHHCCCcEE
Confidence 0 0012347889999999988876421 2445678899999999864
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS- 361 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA- 361 (452)
.-+. | .++.+.+..+++.. .| +..+......|.- .+..+.+.++.+|+..+. +|.+ ++|..
T Consensus 145 ~lv~-----P---~T~~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~v----gfGI~~ 209 (256)
T TIGR00262 145 FLVA-----P---NADDERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK-PVLV----GFGISK 209 (256)
T ss_pred EEEC-----C---CCCHHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-CEEE----eCCCCC
Confidence 2121 2 23466777666643 23 3344556777763 566799999999997643 5554 56665
Q ss_pred HHHHHHHHHcCCCEE
Q 012949 362 LPNILISLQMGISTV 376 (452)
Q Consensus 362 ~ANaLaAl~aGa~~V 376 (452)
-.++..++++|||.|
T Consensus 210 ~e~~~~~~~~GADgv 224 (256)
T TIGR00262 210 PEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHHHHHHcCCCEE
Confidence 567778889999854
No 55
>PLN02389 biotin synthase
Probab=98.02 E-value=0.0035 Score=65.57 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.++.++.++.+.+.|+..|-++.. ...+ | .+.+.+.+.++.+....+.+.+.+ . .
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e--~--~~~e~i~eiir~ik~~~l~i~~s~-G-~------------- 175 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR--K--TNFNQILEYVKEIRGMGMEVCCTL-G-M------------- 175 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCC--h--hHHHHHHHHHHHHhcCCcEEEECC-C-C-------------
Confidence 489999999999999999999887521 1111 1 124566677766543333222211 1 0
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
...+.++..+++|++.+.+-.-.++ .+.+..-..+.++ ..+.++.|++.|+++...+. +|. .+
T Consensus 176 -------l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~----rl~ti~~a~~~Gi~v~sg~I--iGl-gE-- 239 (379)
T PLN02389 176 -------LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDD----RLETLEAVREAGISVCSGGI--IGL-GE-- 239 (379)
T ss_pred -------CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHH----HHHHHHHHHHcCCeEeEEEE--ECC-CC--
Confidence 1345888999999999988766555 3333222345444 44667999999999876655 553 22
Q ss_pred CCHHHHHHHHHHHHHC--CcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDM--GCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~--Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa 367 (452)
++++..+.+..+.+. .++.|.| ++| ....+|.+...+|...|=.+|+..+.+-.-- .-+.......
T Consensus 240 -t~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~ 317 (379)
T PLN02389 240 -AEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQAL 317 (379)
T ss_pred -CHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHH
Confidence 456777777777777 4565553 244 2357788999999988888886322221111 1223344688
Q ss_pred HHHcCCCEEeecccCC-CCCCCCCCCCCcccHHHHHHHHHcCCCCCC
Q 012949 368 SLQMGISTVDCSVAGL-GGCPYAKGASGNVATEDVVYMLSGLGVETN 413 (452)
Q Consensus 368 Al~aGa~~VD~Sv~Gl-GecP~a~graGNaalE~vv~~L~~~Gi~t~ 413 (452)
|+.+||+-+=+ +++ = -+.+.+.++=+.+++.+|++..
T Consensus 318 ~l~~GAN~~~~--g~~~L-------tt~g~~~~~d~~~~~~lg~~~~ 355 (379)
T PLN02389 318 CFLAGANSIFT--GDKLL-------TTPNNDFDADQAMFKELGLIPK 355 (379)
T ss_pred HHHhCCCEEEE--CCccc-------CCCCCChHHHHHHHHHcCCCcc
Confidence 99999984422 121 1 2333455556677888888643
No 56
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.00 E-value=0.0006 Score=67.91 Aligned_cols=185 Identities=12% Similarity=0.158 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc---CCceeEEecchhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE---GARLPVLTPNLKVI 207 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~---~~~l~~l~~~~~~~ 207 (452)
..+.+.-.++++.|.+.|+|.||+|+|-| |- -.|... +.+.+++.++++. ++.+..|
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm------- 97 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF------- 97 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE-------
Confidence 35788999999999999999999998754 32 011111 1134455454432 2222111
Q ss_pred hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949 208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 287 (452)
Q Consensus 208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~ 287 (452)
+|-.. + ++....+.++.+.++|++.|-+.+=. ++...+..+.++++|+....-
T Consensus 98 -----~Y~N~---i---~~~G~e~F~~~~~~aGvdgviipDLP----------------~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 98 -----TYYNP---V---LHYGINKFIKKISQAGVKGLIIPDLP----------------YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred -----ecccH---H---HHhCHHHHHHHHHHcCCeEEEecCCC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence 11110 0 00112347889999999999887521 244567889999999986532
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHH
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPN 364 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~AN 364 (452)
++ |. ++.+.+.++++..... +..+...-+.|. ..|..+.++++.+|+... .|+.+ ++|-. -.+
T Consensus 151 v~-----Pt---T~~eri~~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~ 216 (263)
T CHL00200 151 IA-----PT---SSKSRIQKIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQ 216 (263)
T ss_pred EC-----CC---CCHHHHHHHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHH
Confidence 22 21 3466777777654311 445556777887 567889999999999654 46776 67777 445
Q ss_pred HHHHHHcCCCEE
Q 012949 365 ILISLQMGISTV 376 (452)
Q Consensus 365 aLaAl~aGa~~V 376 (452)
+-...++|||.|
T Consensus 217 ~~~~~~~GADGv 228 (263)
T CHL00200 217 IKQIKGWNINGI 228 (263)
T ss_pred HHHHHhcCCCEE
Confidence 556677899854
No 57
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.90 E-value=0.0021 Score=66.37 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++.++.++...+.|++.+-+.+...|. .+ +....++++.+++ .+++.+.+++|..-.-+....+.
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~-~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~-------- 147 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPN-LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGL-------- 147 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCC--------
Confidence 3799999999999999999999998665553 11 1112344444443 25566655554210000000000
Q ss_pred hhhhhccHHhHHHHHHcCCCEEE-EE-ecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVA-IF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~-i~-~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
...+.+++.+++|++.+. .- -..++...+ +...+ ....++..++++.|+++|+++...++ +|- .+
T Consensus 148 -----~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Gl-gE--- 214 (351)
T TIGR03700 148 -----PTEEVLDELKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGH-IE--- 214 (351)
T ss_pred -----CHHHHHHHHHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeC-CC---
Confidence 012458889999999876 21 122332221 12111 11234444677999999999987777 442 22
Q ss_pred CHHHHHHHHHHHHHCCcCE------EEE----cCCc------CCCcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCcHHH
Q 012949 301 PPSKVAYVAKELHDMGCFE------ISL----GDTI------GVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLP 363 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~------I~L----~DT~------G~~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~GlA~A 363 (452)
++++.++.+..+.+.+.+. |-+ .+|- ...+|.+...+++..|=.+|+++ |-.- -...|. .
T Consensus 215 t~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~-w~~~~~--~ 291 (351)
T TIGR03700 215 TPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAY-WVMLGL--K 291 (351)
T ss_pred CHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc-ccccCH--H
Confidence 4677777777777776543 333 2443 45688888888888776667521 1110 011233 4
Q ss_pred HHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949 364 NILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET 412 (452)
Q Consensus 364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~t 412 (452)
.+..++.+||+-+++|+..=--=|.|....+ .+..++++..++..|..+
T Consensus 292 ~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p 341 (351)
T TIGR03700 292 LAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVP 341 (351)
T ss_pred HHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCe
Confidence 5688999999999888763111111111222 477899999998877653
No 58
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.86 E-value=0.0038 Score=65.07 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++.++.++.+.+.|+..+.+.+...|. ..+.+.+.+.++.+ +++.+.++++..-..+.+..+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~----- 160 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL----- 160 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-----
Confidence 5899999999999999999999998654443 22344455555443 3444444433110000000000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChH----HHh-h-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEA----FSK-S-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~----~~~-~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
...+.+++.+++|++.+. -...+. ..+ . .-.+|.++- .+.++.|+++|+++...+.+ |
T Consensus 161 --------~~~e~l~~LkeAGld~~~--~t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i~--G 224 (371)
T PRK07360 161 --------SYEEVLKALKDAGLDSMP--GTAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMMY--G 224 (371)
T ss_pred --------CHHHHHHHHHHcCCCcCC--CcchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEEe--e
Confidence 123478899999999885 111111 111 1 113455444 47789999999999876663 4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCE------EEE---------cCCcCC---CcHHHHHHHHHHHHHhCCC--ccEEEE
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFE------ISL---------GDTIGV---GTPGTVVPMLEAVMAVVPV--EKLAVH 353 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~------I~L---------~DT~G~---~~P~~v~~li~~l~~~~p~--~~l~vH 353 (452)
- + -++++.++.+..+.+.+.+. |-+ .+.... .+|.+...+|+..|=.+|. +.|.--
T Consensus 225 ~---g-Et~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~ 300 (371)
T PRK07360 225 H---V-ETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQAS 300 (371)
T ss_pred C---C-CCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeecc
Confidence 2 1 25678888888888877654 322 222211 3677778888888777787 233332
Q ss_pred eCCCcCcHHHHHHHHHHcCCCEEeecccC------CCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949 354 LHDTYGQSLPNILISLQMGISTVDCSVAG------LGGCPYAKGASG-NVATEDVVYMLSGLGVET 412 (452)
Q Consensus 354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G------lGecP~a~graG-NaalE~vv~~L~~~Gi~t 412 (452)
. ..+|. .-...++.+||+-+.+++.+ .|. ... ...++++..+++..|..+
T Consensus 301 ~-~~lg~--~~~~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~~ 357 (371)
T PRK07360 301 W-VKLGL--KLAQVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRIP 357 (371)
T ss_pred c-eeeCH--HHHHHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCce
Confidence 2 23343 34567899999999888765 222 121 258899999998887653
No 59
>PLN02591 tryptophan synthase
Probab=97.82 E-value=0.0024 Score=63.24 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc-CCceeEEecchhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE-GARLPVLTPNLKVILQ 209 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~ 209 (452)
.-+.+.-+++++.|.+.|+|.||+|+|-| |- -.|... +.+.+++.++++. ..+.+.+.
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il-------- 83 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL-------- 83 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE--------
Confidence 35778899999999999999999998754 32 011111 1234455554432 12222111
Q ss_pred hhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949 210 RSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 289 (452)
Q Consensus 210 r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~ 289 (452)
++|-.. + ++....+.++.++++|++.+-+..=. ++...+..++++++|+.....++
T Consensus 84 --m~Y~N~---i---~~~G~~~F~~~~~~aGv~GviipDLP----------------~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 84 --FTYYNP---I---LKRGIDKFMATIKEAGVHGLVVPDLP----------------LEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred --EecccH---H---HHhHHHHHHHHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEEEeC
Confidence 111110 0 00112347889999999998887421 35556788999999998653222
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHH
Q 012949 290 CVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNI 365 (452)
Q Consensus 290 ~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANa 365 (452)
| .++.+.+..+++... | +..|...-++|. ..|..+.++++.+|+. .+.|+-+ -+|.. -.++
T Consensus 140 -----P---tt~~~ri~~ia~~~~--gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v 204 (250)
T PLN02591 140 -----P---TTPTERMKAIAEASE--GFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHA 204 (250)
T ss_pred -----C---CCCHHHHHHHHHhCC--CcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHH
Confidence 2 234566666666532 3 445555677776 5589999999999985 4455554 34555 3466
Q ss_pred HHHHHcCCCEE
Q 012949 366 LISLQMGISTV 376 (452)
Q Consensus 366 LaAl~aGa~~V 376 (452)
-..+++|||.|
T Consensus 205 ~~~~~~GADGv 215 (250)
T PLN02591 205 KQIAGWGADGV 215 (250)
T ss_pred HHHHhcCCCEE
Confidence 66778888853
No 60
>PRK15108 biotin synthase; Provisional
Probab=97.81 E-value=0.018 Score=59.55 Aligned_cols=221 Identities=11% Similarity=0.065 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeE-Eecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~-l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.++.++.++.+.+.|++.|-++.. ..|. ..+.+.+.+.++.+....+.. +..+.
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~----------------- 133 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGT----------------- 133 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCc-----------------
Confidence 479999999999999999999977532 2331 123455555555443222221 11111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
...+.+++.+++|++.+.+..-.++-+-... -..+ ++.-.+.++.|++.|+++...+. +|. +.
T Consensus 134 ------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~----~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE- 197 (345)
T PRK15108 134 ------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRT----YQERLDTLEKVRDAGIKVCSGGI--VGL---GE- 197 (345)
T ss_pred ------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCC----HHHHHHHHHHHHHcCCceeeEEE--EeC---CC-
Confidence 1235888999999999999876665433222 1233 44445677999999998875555 442 22
Q ss_pred CHHHHHHHHHHHHHC--CcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEe-CCCcCcHHHHHHH
Q 012949 301 PPSKVAYVAKELHDM--GCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILI 367 (452)
Q Consensus 301 d~e~l~~~a~~l~~~--Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~-Hnd~GlA~ANaLa 367 (452)
++++.++.+..+.+. ..+.|.+ ..| ...++|.+...+|..+|=.+|+..+.+-. -.+.| --....
T Consensus 198 t~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~ 275 (345)
T PRK15108 198 TVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMN--EQTQAM 275 (345)
T ss_pred CHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhC--hhhHHH
Confidence 467888888888888 4455533 345 12467888999999888878873222211 11222 234688
Q ss_pred HHHcCCCEEeecccC-CCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949 368 SLQMGISTVDCSVAG-LGGCPYAKGASGNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 368 Al~aGa~~VD~Sv~G-lGecP~a~graGNaalE~vv~~L~~~Gi~t 412 (452)
|+.+||+-+ -+.+ +=. ..| .+.++.+.+++.+|+.+
T Consensus 276 ~l~~Gan~~--~~g~~~lt------t~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 276 CFMAGANSI--FYGCKLLT------TPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred HHHcCCcEE--EECCcccc------CCC-CCHHHHHHHHHHcCCCc
Confidence 999999977 2222 112 234 68899999999988864
No 61
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.72 E-value=0.022 Score=56.85 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHh-ccCCceeEEe-cchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD-LEGARLPVLT-PNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~ 220 (452)
..+.++.++.++.+.+.|+..+-+.. ...|. ..+..+.++.+.+ .....+.+.+ .+.
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~~~~~~~i~~~~~~g~---------------- 120 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQIVEEMGLKTCATLGL---------------- 120 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHHHHHhCCCeEEecCCC----------------
Confidence 35678889999999999998764422 11111 1122334444432 1112222211 111
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
.+.+.++..+++|++.|.+..-.++...+. ++. ...++...++++.+++.|+++...+. +|. .+
T Consensus 121 -------~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~-i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e--- 184 (296)
T TIGR00433 121 -------LDPEQAKRLKDAGLDYYNHNLDTSQEFYSN-IIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE--- 184 (296)
T ss_pred -------CCHHHHHHHHHcCCCEEEEcccCCHHHHhh-ccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---
Confidence 124588889999999998876555432222 221 12344555777889999999876665 453 22
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 301 PPSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
+.+.+.+.++.+.+.|++.|.+ +.| ....++++..+++...+..+|...|-+=+=--.-+.---...|+.
T Consensus 185 t~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~ 264 (296)
T TIGR00433 185 TVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFM 264 (296)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHH
Confidence 4678888999999999886642 243 123456788889999998898644422111111112111234899
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
+||+.+=+ +|+=- -.|+.+-++=+.+++.+|
T Consensus 265 ~G~n~i~~--g~~~~------~~g~~~~~~~~~~~~~~~ 295 (296)
T TIGR00433 265 AGANSIFV--GDYLT------TTGNPEEDKDKKLLAKLG 295 (296)
T ss_pred hcCceEEE--cCccc------CCCCCCcHHHHHHHHHcC
Confidence 99987653 44444 567888844445566555
No 62
>PRK08445 hypothetical protein; Provisional
Probab=97.71 E-value=0.012 Score=60.94 Aligned_cols=236 Identities=10% Similarity=0.060 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++.++.++...+.|...|-+-....|. .+. .++++.+++ .+..++.++.+.-...+.++.+
T Consensus 72 ~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~------ 140 (348)
T PRK08445 72 ILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISK------ 140 (348)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhC------
Confidence 4799999999999999999977543322332 233 344445543 3456655554431100100000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEE-E-EecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVA-I-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~-i-~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p 295 (452)
....+.+++.+++|++.+. + .=..+|...+.- -++|.++. .++++.|+++|+++.+.++ +|-.
T Consensus 141 -------~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~ 207 (348)
T PRK08445 141 -------ISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV 207 (348)
T ss_pred -------CCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC
Confidence 0113578899999999874 4 334455444332 26676655 3778999999999987776 4432
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcC-----EEE-----EcCCc--------CCCcHHHHHHHHHHHHHhCCC-ccEEEEeCC
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCF-----EIS-----LGDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHD 356 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad-----~I~-----L~DT~--------G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hn 356 (452)
+ ++++..+.+..+.+...+ .+. -.+|- ..++|.+.-.+++..|=.+|. ..|..-. -
T Consensus 208 -E---t~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~ 282 (348)
T PRK08445 208 -E---NDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-V 282 (348)
T ss_pred -C---CHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-c
Confidence 2 456666665555554432 221 12331 137788888888877766675 2222222 2
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
..|..+ +..|+.+||+-+++|+..=---+.|....+ ...|+++.+.+..|..
T Consensus 283 ~~g~~~--~~~~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~ 334 (348)
T PRK08445 283 TQGSYI--GQLALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI 334 (348)
T ss_pred ccCHHH--HHHHHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence 345544 478899999999999864211111221233 4578888888877753
No 63
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.71 E-value=0.0071 Score=59.36 Aligned_cols=184 Identities=20% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCC-cccccCCH-H--------HHHHHHHhccCCceeEEecchhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPK-WVPQLADA-R--------DVMEAVRDLEGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~-~~p~~~D~-e--------~v~~~i~~~~~~~l~~l~~~~~~~i~r~~ 212 (452)
..+.++-.++++.|.+. ++.||+|.|- .|. -.|...++ . ++++.+++..+..+-.++ .
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~---y------- 82 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMT---Y------- 82 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEE---e-------
Confidence 45788899999999998 9999999864 342 12322211 1 233333322222221111 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
|.+... ...+.++.+.++|++.|-+.+-.- |+.+...+.++++|++|+++...+.
T Consensus 83 -~n~~~~--------~~~~~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~--- 137 (244)
T PRK13125 83 -LEDYVD--------SLDNFLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS--- 137 (244)
T ss_pred -cchhhh--------CHHHHHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC---
Confidence 000000 012357889999999988853211 1234566788999999999764332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEE--EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHH
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISL 369 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I--~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl 369 (452)
-.++.+.+..+++.. -..+ .+.-..|.-.+..+.+.++.+++..+..+|.+ +.|. ...++-.++
T Consensus 138 -----p~T~~e~l~~~~~~~----~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~ 204 (244)
T PRK13125 138 -----PKFPDLLIHRLSKLS----PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDAL 204 (244)
T ss_pred -----CCCCHHHHHHHHHhC----CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHH
Confidence 234566666666532 2233 33333465678889999999998876545543 6677 445666667
Q ss_pred HcCCCEE
Q 012949 370 QMGISTV 376 (452)
Q Consensus 370 ~aGa~~V 376 (452)
++|||.+
T Consensus 205 ~~gaD~v 211 (244)
T PRK13125 205 SAGADGV 211 (244)
T ss_pred HcCCCEE
Confidence 9998854
No 64
>PRK06256 biotin synthase; Validated
Probab=97.69 E-value=0.0099 Score=60.71 Aligned_cols=221 Identities=15% Similarity=0.088 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++.++.++.+.+.|+..+-+-. ...|. ..+.+.+.+.++.+ .+..+.+- .+.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~-~g~--------------- 149 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICAC-LGL--------------- 149 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEec-CCc---------------
Confidence 47899999999999999997665532 22221 12224455555543 23322211 110
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
...+.++..+++|++.+.+..-.|+...+ +++.+ ...+...++++.+++.|+++...+. +|. .
T Consensus 150 --------l~~e~l~~LkeaG~~~v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g--- 212 (336)
T PRK06256 150 --------LTEEQAERLKEAGVDRYNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G--- 212 (336)
T ss_pred --------CCHHHHHHHHHhCCCEEecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---
Confidence 12357888999999999886544664433 23221 1344455677999999998876555 443 1
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 369 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl 369 (452)
-+.+.+.+.++.+.+.+++.|.+ +.| ....+|.++.+++..+|-.+|...|-+-++-..-+.-. .-+++
T Consensus 213 Et~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~-~~~~~ 291 (336)
T PRK06256 213 ESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSL-QPLGL 291 (336)
T ss_pred CCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhh-HHHHh
Confidence 25788888899999999887765 343 23467889999999988888987676655543223222 12334
Q ss_pred HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949 370 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 370 ~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t 412 (452)
+||+.+=+. ++=- ..|+...+++- +++.+|+..
T Consensus 292 -~g~~~~~~g--~~lt------~~g~~~~~d~~-~~~~~g~~~ 324 (336)
T PRK06256 292 -GGANSVIVG--NYLT------TVGQPATADLD-MIEDLGFEI 324 (336)
T ss_pred -ccCceeeEC--Cccc------CCCCChHHHHH-HHHHCCCCc
Confidence 687744221 1111 35666665554 677788754
No 65
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.66 E-value=0.0065 Score=63.35 Aligned_cols=221 Identities=13% Similarity=0.142 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc----CCceeEEecchhhhhhhhhhhhhcc
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~----~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
..++.++.++.++.+.+.|++.|-+...-.|. ..+.+.+.+.++.+. .+.+.+. |
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g-~---------------- 160 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQ-P---------------- 160 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccC-C----------------
Confidence 35899999999999999999999775433332 235566666666543 2222110 0
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeee
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNI----NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVV 292 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~----~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~ 292 (452)
...+.++..+++|++.+.+..-. ++.+.+.-. ..+.++.+ +.++.|++.|++ |...++ +
T Consensus 161 ---------lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl----~~i~~a~~aG~~~v~~g~i--~ 225 (371)
T PRK09240 161 ---------LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRL----ETPERAGRAGIRKIGLGAL--L 225 (371)
T ss_pred ---------CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHH----HHHHHHHHcCCCeeceEEE--e
Confidence 12357889999999999998766 444332221 22555555 566899999997 765555 4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCc------CEEE---EcCCcC------CCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGC------FEIS---LGDTIG------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 357 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~---L~DT~G------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd 357 (452)
|-+. +.+...+++..+.+.+. ..|. |-...| .++|.++.++|..+|-.+|...|-+-+--.
T Consensus 226 Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~ 301 (371)
T PRK09240 226 GLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRES 301 (371)
T ss_pred cCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCC
Confidence 4332 24556666655554443 2343 334333 257889999999999888976665554432
Q ss_pred cCcH---HHHHHHHHHcCCCEEeecccCCCCCCCCCCC-C--------CcccHHHHHHHHHcCCCCC
Q 012949 358 YGQS---LPNILISLQMGISTVDCSVAGLGGCPYAKGA-S--------GNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 358 ~GlA---~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gr-a--------GNaalE~vv~~L~~~Gi~t 412 (452)
..+. +.....++.|| .-+.++|+.. . . -.-+.++.+.+|+.+|+++
T Consensus 302 ~~lrd~~~~~~~~~~~ag---~~~~~G~y~~------~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~ 359 (371)
T PRK09240 302 PEFRDNLIPLGITKMSAG---SSTQPGGYAD------DHKELEQFEISDDRSVEEVAAALRAKGLQP 359 (371)
T ss_pred HHHHHHHHhhcceeeccC---ccCCCCCcCC------CCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence 2111 11112333444 2234455443 1 1 2468899999999999875
No 66
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.63 E-value=0.0022 Score=60.74 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++-+++++.| +-|++.||+|+.-... ..-+.++.+++. ++..+.+ .++ ++ ..
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~---d~k-----~~---d~----- 64 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLA---DLK-----TM---DA----- 64 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEE---EEe-----ec---cc-----
Confidence 36788999999999 8999999998432111 112455566543 3322211 110 00 00
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
....++.+.++|++.|.+..-... ..+.+++++++++|+++...++. +
T Consensus 65 ------~~~~~~~~~~~Gad~i~vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~~-----------~ 112 (206)
T TIGR03128 65 ------GEYEAEQAFAAGADIVTVLGVADD---------------ATIKGAVKAAKKHGKEVQVDLIN-----------V 112 (206)
T ss_pred ------hHHHHHHHHHcCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCEEEEEecC-----------C
Confidence 001578899999998876543221 23457788999999988754321 1
Q ss_pred HHHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 303 SKVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
....+.++.+.+.|+|.|.+. ++.+...+ +.++.+++.++..++.+= =|.-..|.-..+++||+.|-
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~----~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~ 184 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPF----EDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVI 184 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH----HHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEE
Confidence 113334455567799988774 12222233 345555665555444432 35566788888999999665
Q ss_pred e
Q 012949 378 C 378 (452)
Q Consensus 378 ~ 378 (452)
.
T Consensus 185 v 185 (206)
T TIGR03128 185 V 185 (206)
T ss_pred E
Confidence 4
No 67
>PRK08444 hypothetical protein; Provisional
Probab=97.62 E-value=0.019 Score=59.67 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++.++.++.+.+.|+..|-+-+...|.. + +....++++.+++ .+++.+.+++|.--.-+.+..+ .
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~-~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g--~------ 148 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY-G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFG--K------ 148 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC-C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcC--C------
Confidence 58999999999999999999999876655542 1 1112345555554 3566676666532111111111 0
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHH-----HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-----SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-----~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
...+.+++.+++|++.+.- ..-+++ .+.-.++.. -++..++.+.|+++|+++...+++ |-. +
T Consensus 149 -----~~~e~l~~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~~---~~~~~~i~~~a~~~Gi~~~sg~l~--G~g-E 215 (353)
T PRK08444 149 -----SYEEVLEDMLEYGVDSMPG--GGAEIFDEEVRKKICKGKVS---SERWLEIHKYWHKKGKMSNATMLF--GHI-E 215 (353)
T ss_pred -----CHHHHHHHHHHhCcccCCC--CCchhcCHHHHhhhCCCCCC---HHHHHHHHHHHHHcCCCccceeEE--ecC-C
Confidence 1235778899999986542 222222 121122332 244557779999999999877774 422 2
Q ss_pred CCCCHHHHHHHHHHHHHCCcCE------EEE----cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC-cCcHH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFE------ISL----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL 362 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~------I~L----~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd-~GlA~ 362 (452)
++++.++.+..+.+...+. |-+ .+| ....+|.+.-.+++..|=.+|++ =|..-. .-++.
T Consensus 216 ---t~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~ 289 (353)
T PRK08444 216 ---NREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTL 289 (353)
T ss_pred ---CHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcH
Confidence 4667777776666654432 223 344 22467888888887777666653 132222 12456
Q ss_pred HHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 411 (452)
Q Consensus 363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~ 411 (452)
..+..||..||+=+++|+..====|.|+..++ ..+.+++...++..|..
T Consensus 290 ~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~ 339 (353)
T PRK08444 290 NLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI 339 (353)
T ss_pred HHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence 78889999999999999743111112221233 46789999999887764
No 68
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.49 E-value=0.01 Score=59.03 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc----CCceeEEe-cchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE----GARLPVLT-PNLK 205 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~----~~~l~~l~-~~~~ 205 (452)
..+.+.-.++++.|.+.|++.||+|+|-| |- -.|... +.+++++.++++. ++.+..|+ -|.-
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i 101 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI 101 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 35788999999999999999999999754 32 011111 2234455554432 22222222 1110
Q ss_pred hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949 206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 285 (452)
Q Consensus 206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~ 285 (452)
|+ ....+.++.++++|++.+.+..= . ++...+.++.++++|+...
T Consensus 102 --------~~-----------~G~e~f~~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 102 --------FQ-----------YGVERFAADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred --------hh-----------cCHHHHHHHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEE
Confidence 10 11234789999999999988531 1 3566788899999999865
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEE
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLA 351 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~ 351 (452)
.-+ .| .++.+.+..+++.. -| +..+.+.-++|. ..|..+.++++.+++..+ .++-
T Consensus 147 ~lv-----ap---~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~-~pv~ 204 (258)
T PRK13111 147 FLV-----AP---TTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAHTD-LPVA 204 (258)
T ss_pred EEe-----CC---CCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC-CcEE
Confidence 211 12 23455666555542 22 333444455555 567789999999998653 3443
No 69
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.45 E-value=0.012 Score=60.71 Aligned_cols=212 Identities=16% Similarity=0.162 Sum_probs=135.0
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRS 211 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~ 211 (452)
++.+..+. .++.+....++++-.+.+.+.|=-.++..-++.+ .+.+...++.. .... +++-+. +.
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValH-LD------ 83 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMH-QD------ 83 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEE-CC------
Confidence 44455443 4889999999999999999987765543322222 22222333322 1121 232221 00
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
.+. ..+.+.+|+++|..-|.+=.|.-+ ..|...+.+|.++.-++++++|+..|+.|.+.|-..
T Consensus 84 ----Hg~----------~~e~i~~ai~~GftSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~v 146 (347)
T PRK09196 84 ----HGN----------SPATCQRAIQLGFTSVMMDGSLKA---DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCL 146 (347)
T ss_pred ----CCC----------CHHHHHHHHHcCCCEEEecCCCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 110 235788999999998887443210 123344678999999999999999999999888765
Q ss_pred ecCC-------C-----------CCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC----cHH---HHHHHHHHHHHh
Q 012949 292 VGCP-------V-----------EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAV 344 (452)
Q Consensus 292 ~g~p-------~-----------~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~----~P~---~v~~li~~l~~~ 344 (452)
-|.+ + ...++|+...++++ +.|+|.+.++ -.=|.- .|. -=.++++.+++.
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~ 223 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHAR 223 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhc
Confidence 3332 1 11467777666664 4478855443 233333 242 234567888888
Q ss_pred CCCccEEEEeCCCc-------------------CcHHHHHHHHHHcCCCEEee
Q 012949 345 VPVEKLAVHLHDTY-------------------GQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 345 ~p~~~l~vH~Hnd~-------------------GlA~ANaLaAl~aGa~~VD~ 378 (452)
+|++||.+|.=... |........|+..|+.-|+.
T Consensus 224 v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi 276 (347)
T PRK09196 224 LPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNI 276 (347)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEe
Confidence 87679999987754 77889999999999987754
No 70
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.45 E-value=0.014 Score=59.04 Aligned_cols=195 Identities=19% Similarity=0.210 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+....+++.-.+.+-+.|--.+...-++.+. .+.+...++.. .+..+++.+.- . +
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~~~vPV~lHL-D--------H------ 86 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMGITVPVAIHL-D--------H------ 86 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCCCCcEEEEC-C--------C------
Confidence 47889999999999999999887765432222221 12223333321 22233332211 1 1
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--- 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--- 297 (452)
...+.+++|++.|++.|.+=.+. .+.+|.++..++++++|+..|..|.+.|-...|.++.
T Consensus 87 -------~~~~~i~~ai~~GftSVm~d~S~----------l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g 149 (293)
T PRK07315 87 -------GHYEDALECIEVGYTSIMFDGSH----------LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIG 149 (293)
T ss_pred -------CCHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccC
Confidence 11347889999999988875432 3568899999999999999999998777765443442
Q ss_pred -CC-CCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 298 -GA-IPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 298 -~r-~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
+. ++|+...++. +.|+|.|.++ -.=|.- +|.-=.++++.+++.++++||.+|.-. |....|...+++
T Consensus 150 ~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~ 223 (293)
T PRK07315 150 KGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIK 223 (293)
T ss_pred ccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHH
Confidence 22 6777765544 5699988876 331221 343345678888888765688877754 788899999999
Q ss_pred cCCCEEeec
Q 012949 371 MGISTVDCS 379 (452)
Q Consensus 371 aGa~~VD~S 379 (452)
.|++-|+..
T Consensus 224 ~Gi~KiNv~ 232 (293)
T PRK07315 224 LGVAKVNVN 232 (293)
T ss_pred cCCCEEEEc
Confidence 999977653
No 71
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.44 E-value=0.018 Score=57.10 Aligned_cols=197 Identities=20% Similarity=0.259 Sum_probs=106.9
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----Hhcc---CCceeEE
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLE---GARLPVL 200 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~---~~~l~~l 200 (452)
|+..|+ |-..--+..++.++.++.++.+.+.|.+.|++|...+ |. .+.. +.++.++++ +.+. ++.+++=
T Consensus 5 ilN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-~~~i-~~~~E~~rl~~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 5 IVNVTP-DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG-ADRV-SPEEELNRVVPVIKALRDQPDVPISVD 81 (257)
T ss_pred EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 444444 4444434557889999999999999999999996443 32 2222 333333333 3221 3333322
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
+.+ .+.+++|++.|++.|.=..... ..++++.+++.
T Consensus 82 T~~--------------------------~~vi~~al~~G~~iINsis~~~------------------~~~~~~l~~~~ 117 (257)
T TIGR01496 82 TYR--------------------------AEVARAALEAGADIINDVSGGQ------------------DPAMLEVAAEY 117 (257)
T ss_pred CCC--------------------------HHHHHHHHHcCCCEEEECCCCC------------------CchhHHHHHHc
Confidence 222 2478889999988665332210 12444567788
Q ss_pred CCcEEEEEEeeecCCCCCCC----------CHHHHHHHHHHHHHCCc--CEEEEcCCcCCC---cHHHHHHHHHHHHHhC
Q 012949 281 SIPVRGYVSCVVGCPVEGAI----------PPSKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAVV 345 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~r~----------d~e~l~~~a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~li~~l~~~~ 345 (452)
|..+. ++..-|.|..... -.+++.+.++.+.++|+ +.|.| |. |++ ++++-.++++.++.--
T Consensus 118 ~~~vV--~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DP-g~gf~ks~~~~~~~l~~i~~l~ 193 (257)
T TIGR01496 118 GVPLV--LMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL-DP-GIGFGKTPEHNLELLKHLEEFV 193 (257)
T ss_pred CCcEE--EEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-EC-CCCcccCHHHHHHHHHHHHHHH
Confidence 88776 3443333322100 11345566777888998 46766 76 443 3445555555554310
Q ss_pred -CCcc--EEE------------EeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 346 -PVEK--LAV------------HLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 346 -p~~~--l~v------------H~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
++.| +++ -..+..+..++-+..|++.||++|
T Consensus 194 ~~~~p~l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 194 ALGYPLLVGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred hCCCcEEEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEE
Confidence 1222 222 112333344555566778888866
No 72
>PRK05927 hypothetical protein; Provisional
Probab=97.41 E-value=0.026 Score=58.57 Aligned_cols=236 Identities=14% Similarity=0.059 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++.++.++...+.|+..+-+.+...|. .+.+.+.+.++.+ +++.+-++.+..-..+.+..+.
T Consensus 75 ~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~----- 144 (350)
T PRK05927 75 LLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGI----- 144 (350)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCC-----
Confidence 6899999999999999999999887666654 2344444444432 3343323332110000000000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEE---EEecCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVA---IFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~---i~~s~Sd~~~~~~~~~-s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p 295 (452)
...+.+++.+++|++.+. .-+..+.+...--.++ +.++= .+.++.|+++|+++...+++-.
T Consensus 145 --------~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~r----l~~i~~A~~lGi~~~sg~l~G~--- 209 (350)
T PRK05927 145 --------STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGW----IQFHKLAHRLGFRSTATMMFGH--- 209 (350)
T ss_pred --------CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHH----HHHHHHHHHcCCCcCceeEEee---
Confidence 123578888999997655 2233333322211222 33433 3677999999999987777532
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcC--EEE--Ec------CCc---C---CCcHHHHHHHHHHHHHhCCCccEEEEeC-CCc
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCF--EIS--LG------DTI---G---VGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTY 358 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad--~I~--L~------DT~---G---~~~P~~v~~li~~l~~~~p~~~l~vH~H-nd~ 358 (452)
.+ ++++..+.+..+.+.+-+ .|. ++ +|- . ..+|.++-.+++..|-.+|+++ |.- .-.
T Consensus 210 gE---t~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~---~i~~~w~ 283 (350)
T PRK05927 210 VE---SPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFD---HIAASWF 283 (350)
T ss_pred CC---CHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCC---cccCCcc
Confidence 12 355555555555544311 111 33 442 1 4788888888888887778643 221 123
Q ss_pred CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
.++...+..||.+||+-+++++..====|.|+...+ ...+++...++..|..
T Consensus 284 ~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~ 335 (350)
T PRK05927 284 GEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI 335 (350)
T ss_pred ccCHHHHHHHHhCCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence 355567778999999999988743111122222333 3578888888877754
No 73
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.41 E-value=0.019 Score=58.75 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c--CCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--GARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~--~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
..+.+....+++.-.+.+-+.|--.++..-++.+. .-...+...++.. . +.++++.+.. . + +
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHL-D--------H--g--- 95 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHL-D--------H--G--- 95 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEEC-C--------C--C---
Confidence 47889999999999999999877665432222221 0012223333322 1 1133332211 0 0 1
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--- 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--- 297 (452)
...+.+.+|+++|..-|.+=.|. .+.++.++.-++++++|+..|+.|.+.|-..-|.++.
T Consensus 96 -------~~~e~i~~ai~~GftSVMiD~S~----------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~ 158 (321)
T PRK07084 96 -------DSFELCKDCIDSGFSSVMIDGSH----------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSA 158 (321)
T ss_pred -------CCHHHHHHHHHcCCCEEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccC
Confidence 12358899999999998875442 2468899999999999999999999888876555443
Q ss_pred -C--CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC-------cHHHHHHHHHHHHHhCCCccEEEEeCC---------
Q 012949 298 -G--AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHD--------- 356 (452)
Q Consensus 298 -~--r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~-------~P~~v~~li~~l~~~~p~~~l~vH~Hn--------- 356 (452)
. .++|+...++++. .|+|.+.++ -.=|.- .|.-=.++++.+++.++++||.+|.=.
T Consensus 159 ~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~ 235 (321)
T PRK07084 159 EHHTYTQPEEVEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKT 235 (321)
T ss_pred cccccCCHHHHHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHH
Confidence 1 4678777777654 588855443 333433 244446788899998876799999877
Q ss_pred ----------CcCcHHHHHHHHHHcCCCEEee
Q 012949 357 ----------TYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 357 ----------d~GlA~ANaLaAl~aGa~~VD~ 378 (452)
++|..-.....|+..|+.-|+.
T Consensus 236 ~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi 267 (321)
T PRK07084 236 INEYGGKLKDAIGIPEEQLRKAAKSAVCKINI 267 (321)
T ss_pred HHHhcCccccCCCCCHHHHHHHHHcCCceecc
Confidence 3488899999999999886643
No 74
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=97.39 E-value=0.016 Score=60.39 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC----CceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG----ARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~----~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++..+.++.+.+.|+..|-+.+...|. ..+.+.+.+.++.+.. +.+.+ .|
T Consensus 102 ~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei-~~----------------- 159 (366)
T TIGR02351 102 KLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEV-QP----------------- 159 (366)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCcccccc-cc-----------------
Confidence 4799999999999999999988876443332 2355667777665432 22111 01
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCC-hHH-Hhhh---cCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeec
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASAS-EAF-SKSN---INCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVG 293 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~-~~~~---~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g 293 (452)
.+.+.++..+++|++++.+..-.. +.. .+.. ...+.++.+ +.++.|++.|++ |...+. +|
T Consensus 160 --------lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl----~~i~~a~~aG~~~v~~g~i--~G 225 (366)
T TIGR02351 160 --------LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRL----NTPERAAKAGMRKIGIGAL--LG 225 (366)
T ss_pred --------CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHH----HHHHHHHHcCCCeeceeEE--Ee
Confidence 134588999999999999987654 332 2211 122455444 566999999998 665455 44
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCc------CEEE---Ec------CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGC------FEIS---LG------DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~---L~------DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
-+. + ......++..+...+. ..|. |- .....++|.++.++|..+|-.+|...|-+-+--..
T Consensus 226 l~e-~---~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~ 301 (366)
T TIGR02351 226 LDD-W---RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESK 301 (366)
T ss_pred Cch-h---HHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCH
Confidence 432 2 2333333333332222 2222 22 22355778999999999999889766665544321
Q ss_pred CcH---HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC---------cccHHHHHHHHHcCCCCC
Q 012949 359 GQS---LPNILISLQMGISTVDCSVAGLGGCPYAKGASG---------NVATEDVVYMLSGLGVET 412 (452)
Q Consensus 359 GlA---~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG---------NaalE~vv~~L~~~Gi~t 412 (452)
-+. +.....++.+|.. +.++|+-. ..| +-++++++.+++.+|+.+
T Consensus 302 ~lrd~~~~~~~~~~~a~~~---~~~G~y~~------~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~ 358 (366)
T TIGR02351 302 KFRDNVIPLGITKMSAGSS---TEPGGYSS------EKKGLEQFEISDERSVAEVEEDLRSKGLQP 358 (366)
T ss_pred HHHHHHHhhcceeeccCcc---cCCCCcCC------CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence 111 0111222222211 22333332 223 378899999999988875
No 75
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.37 E-value=0.026 Score=54.56 Aligned_cols=153 Identities=21% Similarity=0.319 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc---CCceeEEecchhhhhhhhhhhhhccch
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE---GARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~---~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.+.++-+++++.|.+.|++.+|+++- +| +..+.++.+++ .. ++.+.+-+ .
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~-~~-------~a~~~i~~l~~~~~~~p~~~vGaGT--V---------------- 75 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT-NP-------FASEVIKELVELYKDDPEVLIGAGT--V---------------- 75 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC-Cc-------cHHHHHHHHHHHcCCCCCeEEeeee--C----------------
Confidence 38899999999999999999999974 33 23455666653 21 23333211 0
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
.+.++++.|+++|.+.+. .+.-+ .+++++|++.|+.+. | +-.
T Consensus 76 -------~~~~~~~~a~~aGA~Fiv--sP~~~------------------~~v~~~~~~~~i~~i---------P--G~~ 117 (213)
T PRK06552 76 -------LDAVTARLAILAGAQFIV--SPSFN------------------RETAKICNLYQIPYL---------P--GCM 117 (213)
T ss_pred -------CCHHHHHHHHHcCCCEEE--CCCCC------------------HHHHHHHHHcCCCEE---------C--CcC
Confidence 134689999999999765 22111 367799999999864 1 334
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 301 PPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
+++.+.. +.++|+|.|.+ ++..| |. .++.++..+|.++|. -+=|.-..|.-.-+.+|++.|
T Consensus 118 T~~E~~~----A~~~Gad~vklFPa~~~G---~~----~ik~l~~~~p~ip~~----atGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 118 TVTEIVT----ALEAGSEIVKLFPGSTLG---PS----FIKAIKGPLPQVNVM----VTGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CHHHHHH----HHHcCCCEEEECCcccCC---HH----HHHHHhhhCCCCEEE----EECCCCHHHHHHHHHCCCcEE
Confidence 5555543 35699999998 34433 43 366777778865554 345777899999999999865
No 76
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.34 E-value=0.051 Score=58.53 Aligned_cols=232 Identities=15% Similarity=0.201 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCc-----eeEEecchhhhhhhhhhhhhc
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR-----LPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~-----l~~l~~~~~~~i~r~~~~~~~ 217 (452)
..++.++.++-++.+.+.|++.+-+-+.-.|. -.+.+.+.+.++.+...+ +..+.-+.. +
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~----~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig----------~- 177 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPP----NCDIEYILESIKTIYSTKHGNGEIRRVNVNIA----------P- 177 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC----CCCHHHHHHHHHHHHHhccccCcceeeEEEee----------c-
Confidence 35899999999999999999998886544432 134566666666543211 100000000 0
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC--hHHHhhhc---CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS--EAFSKSNI---NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV 291 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~---~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~ 291 (452)
.+.++++..+++|++.+.++--+. +.+.+... ..+.++-+ +.++.|++.|++ |...+.
T Consensus 178 ----------lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl----~t~~rA~~aGi~~Vg~G~L-- 241 (469)
T PRK09613 178 ----------TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRL----TAMDRAMEAGIDDVGIGVL-- 241 (469)
T ss_pred ----------CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHH----HHHHHHHHcCCCeeCeEEE--
Confidence 134689999999999999986542 23332222 23455444 556899999997 764444
Q ss_pred ecCCCCCCCCHHHHHHHHHHH---HHCCcCEEEEc------CC-c----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949 292 VGCPVEGAIPPSKVAYVAKEL---HDMGCFEISLG------DT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 357 (452)
Q Consensus 292 ~g~p~~~r~d~e~l~~~a~~l---~~~Gad~I~L~------DT-~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd 357 (452)
||.++ ++.+.-.+..-++.+ ...|++.|.++ +| . -..++.++..+|..+|=.+|...|-+=.+..
T Consensus 242 ~GLge-~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~ 320 (469)
T PRK09613 242 FGLYD-YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRES 320 (469)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCC
Confidence 55443 222221222222222 12356666654 43 2 2367889999999999889987777777776
Q ss_pred cCcHHHHHHHHHHcCCCEEeecc-cCCCCCCCCCC----------CCCcccHHHHHHHHHcCCCCC
Q 012949 358 YGQSLPNILISLQMGISTVDCSV-AGLGGCPYAKG----------ASGNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 358 ~GlA~ANaLaAl~aGa~~VD~Sv-~GlGecP~a~g----------raGNaalE~vv~~L~~~Gi~t 412 (452)
..+ = -..+..||..+++.. .|.|+ |+.. -+=+-++++|+..|...|+.+
T Consensus 321 ~~~--r--~~~~~~gvt~~sags~t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p 380 (469)
T PRK09613 321 AEL--R--REVLELGVSQISAGSRTGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIP 380 (469)
T ss_pred HHH--H--HHHHhhcceeecccccCCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeE
Confidence 442 2 234567888885322 24444 3211 123567899999998777653
No 77
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.31 E-value=0.0071 Score=60.17 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-cccc-----------CCHHHHHHHHHhc----cCCceeEEecchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQL-----------ADARDVMEAVRDL----EGARLPVLTPNLKV 206 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~-----------~D~e~v~~~i~~~----~~~~l~~l~~~~~~ 206 (452)
..+.+.-.++++.|.+.|+|.||+|+|-| |.. .|.. .+.+++++.++++ ++..+..|+
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~----- 94 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT----- 94 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-----
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe-----
Confidence 45788999999999999999999999754 320 1111 1224444444432 233333332
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 286 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~ 286 (452)
|-.. + ++....+.++.+.++|++.+-|.+-.- +...+..+.+++.|+....
T Consensus 95 -------Y~N~---i---~~~G~e~F~~~~~~aGvdGlIipDLP~----------------ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 95 -------YYNP---I---FQYGIERFFKEAKEAGVDGLIIPDLPP----------------EESEELREAAKKHGLDLIP 145 (259)
T ss_dssp --------HHH---H---HHH-HHHHHHHHHHHTEEEEEETTSBG----------------GGHHHHHHHHHHTT-EEEE
T ss_pred -------eccH---H---hccchHHHHHHHHHcCCCEEEEcCCCh----------------HHHHHHHHHHHHcCCeEEE
Confidence 1110 0 001123477889999999988875321 1223556788999998643
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949 287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 364 (452)
Q Consensus 287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN 364 (452)
-++ | .++++.+.++++..... +..+...-++|.- .|.++.++++.+|+.. +.|+.+= +|.....
T Consensus 146 lv~-----p---~t~~~Ri~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e 211 (259)
T PF00290_consen 146 LVA-----P---TTPEERIKKIAKQASGF-IYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPE 211 (259)
T ss_dssp EEE-----T---TS-HHHHHHHHHH-SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHH
T ss_pred EEC-----C---CCCHHHHHHHHHhCCcE-EEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHH
Confidence 222 2 24567777777654311 3444456666665 4788999999999976 4455542 4666666
Q ss_pred HHHHHHcCCCEE
Q 012949 365 ILISLQMGISTV 376 (452)
Q Consensus 365 aLaAl~aGa~~V 376 (452)
-...+..|||.|
T Consensus 212 ~~~~~~~~aDGv 223 (259)
T PF00290_consen 212 QAKKLAAGADGV 223 (259)
T ss_dssp HHHHHHTTSSEE
T ss_pred HHHHHHccCCEE
Confidence 667777887744
No 78
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.29 E-value=0.021 Score=53.73 Aligned_cols=170 Identities=19% Similarity=0.141 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
..+.++-.++++.|.+. ++.||+|.+... ....+.++.+++. ++..+-+.. .- .+.
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~--~v---------~~~----- 65 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADL--KT---------ADA----- 65 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEE--Ee---------ccc-----
Confidence 36788999999999999 999999854211 1112445566543 444332211 00 000
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
....++.++++|++.+.+-....+ +.+.++++++|+.|+++.+.+. +..++
T Consensus 66 ------~~~~~~~~~~aGad~i~~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~ 116 (202)
T cd04726 66 ------GALEAEMAFKAGADIVTVLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDP 116 (202)
T ss_pred ------cHHHHHHHHhcCCCEEEEEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCH
Confidence 001468899999999888664322 2345678899999988753222 22345
Q ss_pred HHHHHHHHHHHHCCcCEEEE-c----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 303 SKVAYVAKELHDMGCFEISL-G----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L-~----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+.+.+ +...|+|.+.+ . .+.| +....+.++.+++. ++.++.+=+ |-...|...++++||+.|=
T Consensus 117 ~e~~~----~~~~~~d~v~~~~~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 117 EKRAK----LLKLGVDIVILHRGIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVI 184 (202)
T ss_pred HHHHH----HHHCCCCEEEEcCcccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEE
Confidence 54443 55679998877 2 2332 12234455555543 334555533 6666899999999999653
No 79
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.26 E-value=0.013 Score=57.49 Aligned_cols=182 Identities=19% Similarity=0.224 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCC-CC----cccccC--------CHHHHHHHHHhcc---CCceeEEec-chhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PK----WVPQLA--------DARDVMEAVRDLE---GARLPVLTP-NLKVI 207 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~----~~p~~~--------D~e~v~~~i~~~~---~~~l~~l~~-~~~~~ 207 (452)
-+.+.-.++++.|.++|++.||+|+|-| |. .++... ..+..++.++.+. +..+-.|+- +.-
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~-- 88 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI-- 88 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH--
Confidence 4668889999999999999999998643 21 111000 0012333333332 222222221 110
Q ss_pred hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949 208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 287 (452)
Q Consensus 208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~ 287 (452)
|+. ...+.++.++++|++.+-+..- + ++...+.++.+|++|++....
T Consensus 89 ------~~~-----------G~~~fi~~~~~aG~~giiipDl----~------------~ee~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 89 ------LQY-----------GLERFLRDAKEAGVDGLIIPDL----P------------PEEAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred ------HHh-----------CHHHHHHHHHHCCCcEEEECCC----C------------HHHHHHHHHHHHHcCCcEEEE
Confidence 000 0124788899999998887531 1 245568889999999987532
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-H
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-N 364 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-N 364 (452)
+. | .++.+.+..+++...+. +..+.+.-+.|.-+ +..+.+.++.+++. .+.+|.+ +.|.-.. +
T Consensus 136 i~-----P---~T~~~~i~~i~~~~~~~-vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v----ggGI~~~e~ 201 (242)
T cd04724 136 VA-----P---TTPDERIKKIAELASGF-IYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV----GFGISTPEQ 201 (242)
T ss_pred eC-----C---CCCHHHHHHHHhhCCCC-EEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE----EccCCCHHH
Confidence 22 2 13455555555432211 33444566666644 57788999999985 4456666 5666655 6
Q ss_pred HHHHHHcCCCEE
Q 012949 365 ILISLQMGISTV 376 (452)
Q Consensus 365 aLaAl~aGa~~V 376 (452)
+-..+++ ||.+
T Consensus 202 ~~~~~~~-ADgv 212 (242)
T cd04724 202 AAEVAKY-ADGV 212 (242)
T ss_pred HHHHHcc-CCEE
Confidence 6666666 7743
No 80
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.24 E-value=0.066 Score=49.35 Aligned_cols=180 Identities=19% Similarity=0.158 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccC--CceeEEe-cchhhhhhhhhhhhhccchh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG--ARLPVLT-PNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~--~~l~~l~-~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.+.-.++++.|.+.|++.|++.. ++++.+. ...+ ..+.+-+ .+.. + ....+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~--------~-~~~~~- 66 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTG--------L-TTTEV- 66 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCC--------C-CcHHH-
Confidence 788899999999999999999963 3344443 2333 2222212 1100 0 00011
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
..+.++.|.+.|++.+.+..+. +. ....+.++.++.+.++++.+ +.++++..|.. |... .+
T Consensus 67 -------~~~~a~~a~~~Gad~i~v~~~~---~~--~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~ 127 (201)
T cd00945 67 -------KVAEVEEAIDLGADEIDVVINI---GS--LKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KT 127 (201)
T ss_pred -------HHHHHHHHHHcCCCEEEEeccH---HH--HhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CC
Confidence 2347788999999999886542 11 11112455566666666655 56888876554 2222 47
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
++.+.++++.+.+.|++.| +++.|.. ....+.++++.+.. ..++.+-.-.+ ...+...++.+|++.+
T Consensus 128 ~~~~~~~~~~~~~~g~~~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 128 ADEIAKAARIAAEAGADFI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred HHHHHHHHHHHHHhCCCEE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 8888888888888888865 5666643 56666655544321 22444443222 3577888888998865
No 81
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=97.21 E-value=0.015 Score=57.43 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=123.3
Q ss_pred HHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~ 227 (452)
.+.++.+.++|++.||+.......+.....+ ..++.+.+++..+..+++..+.... +.....+.-+....
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~~~~~ 85 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLIN-------LASPDKEKREKSIE 85 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceec-------cCCCCHHHHHHHHH
Confidence 4456677899999999965332222111112 2223333322224455554432110 00000000000000
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
...+-++.|.+.|++.|.+.....+. .......+..++.+.+++++|++.|+.+. |....+.....-.+++.+.+
T Consensus 86 ~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~ 160 (279)
T cd00019 86 RLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKE 160 (279)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHH
Confidence 11346788888999988875543220 00011235566778888888999998764 44322111111235566666
Q ss_pred HHHHHHHCCcCEE-EEcCCcC-----CC--cHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 308 VAKELHDMGCFEI-SLGDTIG-----VG--TPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 308 ~a~~l~~~Gad~I-~L~DT~G-----~~--~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
+++.+-. -+.+ .+-|+.= .. +|++..+.++.+.+.++. -...+|.||..+.-. +
T Consensus 161 li~~v~~--~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~------ 223 (279)
T cd00019 161 IIDLIKE--KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S------ 223 (279)
T ss_pred HHHhcCC--CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C------
Confidence 6665530 2222 1224322 21 356677788887776642 237899999765310 0
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHcCCC-CCCC---------ChhhHHHHHHHHH
Q 012949 379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGV-ETNV---------DLRKLMLAGDFIN 427 (452)
Q Consensus 379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi-~t~i---------Dl~~L~~la~~v~ 427 (452)
+. .....+ +.|..+...++..|+..|+ +-.+ +...+.+..+++.
T Consensus 224 ---~~-~~~~~~-G~G~id~~~~l~~L~~~~y~~g~~~lE~~~~~~~~~~~~~~~~~~~ 277 (279)
T cd00019 224 ---GK-DRHEPI-GEGDIDGEELFKELKKDPYQNIPLILETPSENRDAAKIKKEIKLLR 277 (279)
T ss_pred ---CC-ccccCC-CCCCcCCHHHHHHHHhCcccCCCEEEeCCCCCccchhHHHHHHHHh
Confidence 00 011222 2678999999999998876 4222 2345555555554
No 82
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=97.16 E-value=0.057 Score=55.27 Aligned_cols=233 Identities=15% Similarity=0.082 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CC-----HHHHHHHHHhccCCcee-EEecchhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--AD-----ARDVMEAVRDLEGARLP-VLTPNLKVILQRSILFQ 215 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D-----~e~v~~~i~~~~~~~l~-~l~~~~~~~i~r~~~~~ 215 (452)
.++.++.++.++.+.+.|+..+-+.+.-.|...... .+ .++..+.++++...... .+.|...
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~---------- 109 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTN---------- 109 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCcccc----------
Confidence 689999999999999999999888765443211000 00 13344555432110000 0111110
Q ss_pred hccchhhhhhhhccHHhHHHHHHcCCCEEEEE-ecCChHHHhhh----cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIF-ASASEAFSKSN----INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 290 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~-~s~Sd~~~~~~----~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~ 290 (452)
+. ..+.+.++...++|+. +.+. -+.++...+.. .+++.++ ..+.++.|++.|+++...+++
T Consensus 110 -~~--------~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~----~l~~i~~a~~~Gi~~~~~~i~ 175 (336)
T PRK06245 110 -AG--------ILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPEL----RLETIENAGKLKIPFTTGILI 175 (336)
T ss_pred -CC--------CCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHH----HHHHHHHHHHcCCceeeeeee
Confidence 00 0123466666676654 3432 23445443211 1333333 356778999999998777764
Q ss_pred eecCCCCCCCCHHHHHH---HHHHHH-HCC-cCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949 291 VVGCPVEGAIPPSKVAY---VAKELH-DMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 355 (452)
Q Consensus 291 ~~g~p~~~r~d~e~l~~---~a~~l~-~~G-ad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~H 355 (452)
.+ .+ +.+...+ .++.+. +.| ++.|.+ ..| ....++.+..++++..+..+|. .+.+-.-
T Consensus 176 G~---gE---t~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~ 248 (336)
T PRK06245 176 GI---GE---TWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVP 248 (336)
T ss_pred EC---CC---CHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecC
Confidence 32 22 2344444 333332 232 444331 122 2245678888888888888864 2332221
Q ss_pred CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
-.+|. .-...++.+||+-+++|+...|+ -..+... ..++|+++.+++..|..
T Consensus 249 ~~~~~--~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 249 PNLNR--DTGLLLLDAGADDLGGISPVTKD-YVNPEYP-WPDIEELREILEEAGWP 300 (336)
T ss_pred Cccch--HHHHHHHhcCCccccCCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence 24444 33456799999999988886555 1111112 25789999999987764
No 83
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.14 E-value=0.06 Score=51.79 Aligned_cols=153 Identities=25% Similarity=0.330 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-+++++.|.+.|++.||+++-. | +..+.++.+++ .+++.+.+-+ .
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGT--V------------------- 67 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGT--V------------------- 67 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEe--C-------------------
Confidence 478999999999999999999999732 2 33455565653 3443333321 0
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.+.++++.|+++|.+.+. |+.+ -.+++++|++.|+.+. | +-.+|.
T Consensus 68 ----l~~~~a~~a~~aGA~Fiv-----sP~~---------------~~~v~~~~~~~~i~~i---------P--G~~Tpt 112 (204)
T TIGR01182 68 ----LNPEQLRQAVDAGAQFIV-----SPGL---------------TPELAKHAQDHGIPII---------P--GVATPS 112 (204)
T ss_pred ----CCHHHHHHHHHcCCCEEE-----CCCC---------------CHHHHHHHHHcCCcEE---------C--CCCCHH
Confidence 134689999999999872 2211 0377899999998764 1 334555
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHH-H--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
++. .+.++|++.|-+ .|.. + ..+++.++.-+|.+++- -+=|....|.-.=+.+|+..+
T Consensus 113 Ei~----~A~~~Ga~~vKl-------FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 113 EIM----LALELGITALKL-------FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred HHH----HHHHCCCCEEEE-------CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 444 457789998887 4433 2 36788888888875543 466778899999999998744
No 84
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.13 E-value=0.063 Score=54.72 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.+....+++.-.+.+.+.|--.+...-++.+ .+.+...++.. .... +++.+.- . ++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHL-D--------Hg------ 84 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMG----IDMAVGMVKIMCERYPHIPVALHL-D--------HG------ 84 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCC----hHHHHHHHHHHHHhcCCCeEEEEC-C--------CC------
Confidence 4788999999999999999988776554333222 22333333322 2222 3332210 0 01
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---- 297 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---- 297 (452)
...+.+.+|+++|.+-|.+=.|. .+.+|.++.-++++++|+..|+.|++.|-..-|.++.
T Consensus 85 ------~~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (307)
T PRK05835 85 ------TTFESCEKAVKAGFTSVMIDASH----------HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVD 148 (307)
T ss_pred ------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc
Confidence 12358899999999998875442 2457899999999999999999999888876444443
Q ss_pred ----CCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCC----------
Q 012949 298 ----GAIPPSKVAYVAKELHDMGCFEISL--GDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDT---------- 357 (452)
Q Consensus 298 ----~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd---------- 357 (452)
..++|+...++++ +.|+|.+.+ .-+=|.- .|.-=.++++.+++.++ +||.+|.=..
T Consensus 149 ~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPLVLHGgSGip~e~~~~~~ 224 (307)
T PRK05835 149 EKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPLVLHGASAIPDDVRKSYL 224 (307)
T ss_pred cccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCEEEeCCCCCchHHhhhhh
Confidence 1456777666664 458885444 3333443 24555677888888874 5898887554
Q ss_pred ---------cCcHHHHHHHHHHcCCCEEe
Q 012949 358 ---------YGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 358 ---------~GlA~ANaLaAl~aGa~~VD 377 (452)
+|..+-....|+..|+.-|+
T Consensus 225 ~~g~~~~~~~g~~~e~~~kai~~GI~KiN 253 (307)
T PRK05835 225 DAGGDLKGSKGVPFEFLQESVKGGINKVN 253 (307)
T ss_pred hhccccccccCCCHHHHHHHHHcCceEEE
Confidence 33445578888888887654
No 85
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.12 E-value=0.06 Score=55.68 Aligned_cols=212 Identities=16% Similarity=0.158 Sum_probs=134.2
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRS 211 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~ 211 (452)
++.+..+. .++.+....++++-.+.+-+.|--.++..-++.+ .+.+...++.. .... +++.+. +.
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValH-LD------ 81 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMH-QD------ 81 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEE-CC------
Confidence 33444443 4889999999999999999988776654333222 22333333322 1221 232221 00
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
++ ...+.+.+|+++|..-|.+=.|.-+ ..+...+.+|.++.-++++++|+..|+.|.+.|-..
T Consensus 82 --Hg------------~~~e~i~~Ai~~GFtSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~i 144 (347)
T TIGR01521 82 --HG------------NSPATCQRAIQLGFTSVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCL 144 (347)
T ss_pred --CC------------CCHHHHHHHHHcCCCEEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 11 0235888999999998887544211 123345779999999999999999999999888875
Q ss_pred ecCC-------CC-----------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCc----HH---HHHHHHHHHHHh
Q 012949 292 VGCP-------VE-----------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGT----PG---TVVPMLEAVMAV 344 (452)
Q Consensus 292 ~g~p-------~~-----------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~----P~---~v~~li~~l~~~ 344 (452)
-|.+ +. ..++|+...++++. .|+|.+.++ -.=|.-. |. -=.++++.+++.
T Consensus 145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~ 221 (347)
T TIGR01521 145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKK---TKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHAR 221 (347)
T ss_pred ccccccccccccCcccccccchhhcCCCHHHHHHHHHH---HCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHcc
Confidence 4333 21 14577776666654 478854443 2334432 42 224567888888
Q ss_pred CCCccEEEEeCCC-------------------cCcHHHHHHHHHHcCCCEEee
Q 012949 345 VPVEKLAVHLHDT-------------------YGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 345 ~p~~~l~vH~Hnd-------------------~GlA~ANaLaAl~aGa~~VD~ 378 (452)
++++||.+|.=.. +|.--.....|++.|+.-|+.
T Consensus 222 v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi 274 (347)
T TIGR01521 222 LPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNI 274 (347)
T ss_pred CCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEe
Confidence 8667899988664 345578899999999987654
No 86
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.12 E-value=0.055 Score=55.99 Aligned_cols=212 Identities=16% Similarity=0.192 Sum_probs=134.7
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCC-ceeEEecchhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGA-RLPVLTPNLKVILQRS 211 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~-~l~~l~~~~~~~i~r~ 211 (452)
++.+..+. .++.+....+++.-.+.+.+.|--.++..-++.+ .+.+...++.. ... .+++.+. +.
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLH-LD------ 83 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLH-QD------ 83 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEE-CC------
Confidence 34444443 4889999999999999999988776654333332 22233333322 122 1333221 00
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
+ + ...+.+.+|+++|..-|.+=.|.-+ .-+...+.++.++.-++++++|+..|+.|.+.|-..
T Consensus 84 --H--g----------~~~e~i~~Ai~~GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~i 146 (347)
T PRK13399 84 --H--G----------NSPATCQSAIRSGFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCL 146 (347)
T ss_pred --C--C----------CCHHHHHHHHhcCCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 0 1 0235788999999998887544211 011233578999999999999999999999888754
Q ss_pred ecCC-------C-----------CCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC----cHH---HHHHHHHHHHHh
Q 012949 292 VGCP-------V-----------EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAV 344 (452)
Q Consensus 292 ~g~p-------~-----------~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~----~P~---~v~~li~~l~~~ 344 (452)
-|.+ + ...++|+...+++++ .|+|.+.++ -.=|.- .|. -=.++++.+++.
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~ 223 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHAR 223 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhh
Confidence 3222 2 124677777766654 488854443 233333 132 235678889998
Q ss_pred CCCccEEEEeCCC-------------------cCcHHHHHHHHHHcCCCEEee
Q 012949 345 VPVEKLAVHLHDT-------------------YGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 345 ~p~~~l~vH~Hnd-------------------~GlA~ANaLaAl~aGa~~VD~ 378 (452)
++++||.+|.=.. +|....+...|+..|+.-|+.
T Consensus 224 v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi 276 (347)
T PRK13399 224 LPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNI 276 (347)
T ss_pred cCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEe
Confidence 8667999998664 456788999999999987654
No 87
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.10 E-value=0.061 Score=54.98 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=126.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccc--------------ccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVP--------------QLADARDVMEAVRDLEGARLPVLTPNLKVIL 208 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p--------------~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i 208 (452)
..++.++.++.++.+.+.|+..+-+.+...|.... ......++++.+++..+. ++.+.++.
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~---- 107 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGV---- 107 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCC----
Confidence 35899999999999999999998887666554110 000011222222211121 11111111
Q ss_pred hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHh---hhc--CCCHHHHHHHHHHHHHHHHhCCC
Q 012949 209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSK---SNI--NCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~---~~~--~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
.+.+.++..+++|++ +++..-. ++...+ ... +++.+ .-.+.++.|++.|+
T Consensus 108 -------------------lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~----~~l~~i~~a~~~Gi 163 (322)
T TIGR03550 108 -------------------MSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPA----VRLETIEDAGRLKI 163 (322)
T ss_pred -------------------CCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHH----HHHHHHHHHHHcCC
Confidence 123577888888875 3443222 121110 011 22333 23578899999999
Q ss_pred cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-----cCEEEE------cCCc----CCCcHHHHHHHHHHHHHhCCC
Q 012949 283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-----CFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-----ad~I~L------~DT~----G~~~P~~v~~li~~l~~~~p~ 347 (452)
++...++ +|. .+ +++...+.+..+.+.. ++.+.+ +.|- ...++.+...+++..|=.+|.
T Consensus 164 ~~~s~~i--~G~-gE---t~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~ 237 (322)
T TIGR03550 164 PFTTGIL--IGI-GE---TREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP 237 (322)
T ss_pred Cccceee--EeC-CC---CHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9987777 442 23 3566666555554443 433221 2342 245677888888777766753
Q ss_pred -ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHcCCCCC
Q 012949 348 -EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSGLGVET 412 (452)
Q Consensus 348 -~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~~Gi~t 412 (452)
..|-.-. .+| ......|+.+||+-+++|+.=.|+ +....|. .+.++++.+++..|..+
T Consensus 238 ~~~I~~~~--~l~--~~~~~~~L~~Gand~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~p 297 (322)
T TIGR03550 238 DISIQVPP--NLN--REDYRLLLDAGIDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFTL 297 (322)
T ss_pred CCeeecCC--ccC--hHHHHHHHhcCCccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCCc
Confidence 2232222 333 214678999999999999641122 0001232 47899999999888754
No 88
>PRK08185 hypothetical protein; Provisional
Probab=97.09 E-value=0.1 Score=52.72 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=128.1
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~ 212 (452)
++.+..+. .++.+....+++.-.+.+.+.|--.++..-++.+ .++...++.+ ....+++.+.. .
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~~~~~~~~~~a~~~~vPV~lHL-D------- 76 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----DNFFAYVRERAKRSPVPFVIHL-D------- 76 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----HHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence 44454443 4889999999999999999988876654333222 1244444432 23333432211 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
.+. ..+.++.|++.|.+-|.+=.| + .+.++.++..++++++|+..|+.|.+.|-. +
T Consensus 77 ---Hg~----------~~e~i~~ai~~Gf~SVM~D~S--~--------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-v 132 (283)
T PRK08185 77 ---HGA----------TIEDVMRAIRCGFTSVMIDGS--L--------LPYEENVALTKEVVELAHKVGVSVEGELGT-I 132 (283)
T ss_pred ---CCC----------CHHHHHHHHHcCCCEEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee-c
Confidence 110 235889999999998776443 2 356899999999999999999999888866 4
Q ss_pred cCCCCC---------CCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCC-----cHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949 293 GCPVEG---------AIPPSKVAYVAKELHDMGCFEISLG-DTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDT 357 (452)
Q Consensus 293 g~p~~~---------r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~-----~P~~v~~li~~l~~~~p~~~l~vH~Hnd 357 (452)
|....+ .++|+...++.+ +.|+|.+.++ -|++.. .|.--.++++.+++.++ +||.+|+-..
T Consensus 133 g~~e~~~~~~~~~~~~t~peea~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg 208 (283)
T PRK08185 133 GNTGTSIEGGVSEIIYTDPEQAEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSA 208 (283)
T ss_pred cCcccccccccccccCCCHHHHHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCC
Confidence 432111 346665554443 3388877761 222222 24334677888888765 5788877655
Q ss_pred cCcHHHHHHHHHHcCCCEEee
Q 012949 358 YGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 358 ~GlA~ANaLaAl~aGa~~VD~ 378 (452)
. .-.....|+..|+.-|+.
T Consensus 209 ~--~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 209 N--PDAEIAESVQLGVGKINI 227 (283)
T ss_pred C--CHHHHHHHHHCCCeEEEe
Confidence 4 577889999999886643
No 89
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.07 E-value=0.1 Score=52.72 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc--eeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR--LPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~--l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+....+++.-.+.+-+.|--.++..-++. ...+.+...++.. ...+ +++.+. +. .+
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lH-LD----------Hg--- 87 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIH-LD----------HG--- 87 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEE-CC----------CC---
Confidence 478899999999999999998877655432321 1223333334322 1221 233221 00 01
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--- 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--- 297 (452)
...+.+.+|+++|..-|.+=.|. .+.+|.++.-++++++|+..|+.|++.|-..-|.++.
T Consensus 88 -------~~~e~i~~ai~~GftSVM~DgS~----------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~ 150 (285)
T PRK07709 88 -------SSFEKCKEAIDAGFTSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIA 150 (285)
T ss_pred -------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccc
Confidence 02358889999999988875443 2468999999999999999999999988886454442
Q ss_pred -C--CCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 298 -G--AIPPSKVAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 298 -~--r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
. .++|+...+++++. |+|.+.+ .-.=|.- .|.-=.++++.+++.++ +||.+|+ ..|+.-.....|+.
T Consensus 151 ~~~~yT~peeA~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~ 224 (285)
T PRK07709 151 EGVIYADPAECKHLVEAT---GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAIS 224 (285)
T ss_pred ccccCCCHHHHHHHHHHh---CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHH
Confidence 1 46888777776544 8885554 2222221 34444567788888774 5787765 57888889999999
Q ss_pred cCCCEEe
Q 012949 371 MGISTVD 377 (452)
Q Consensus 371 aGa~~VD 377 (452)
.|+.-|+
T Consensus 225 ~Gi~KiN 231 (285)
T PRK07709 225 LGTSKIN 231 (285)
T ss_pred cCCeEEE
Confidence 9987554
No 90
>PRK06801 hypothetical protein; Provisional
Probab=97.07 E-value=0.086 Score=53.27 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=127.8
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~ 212 (452)
++.+..+. ..+.+....+++.-.+.+.+.|--.++..-++. ..+.+...++.. ....+++.+.. .
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~----~~~~~~~~~~~~a~~~~vpV~lHl-D------- 82 (286)
T PRK06801 15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYI----SLESLVEAVKFEAARHDIPVVLNL-D------- 82 (286)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence 34444443 478999999999999999998776554322221 233344444432 23333432211 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
+ +. ..+.++.|++.|++.|.+=.|. .+.++.++..++++++|+..|+.|.+.+-..
T Consensus 83 -H--~~----------~~e~i~~Ai~~GftSVm~D~S~----------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v- 138 (286)
T PRK06801 83 -H--GL----------HFEAVVRALRLGFSSVMFDGST----------LEYEENVRQTREVVKMCHAVGVSVEAELGAV- 138 (286)
T ss_pred -C--CC----------CHHHHHHHHHhCCcEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEeecCcc-
Confidence 1 10 2358899999999999884332 2457889999999999999999998777663
Q ss_pred cCCCCC----------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC------cHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949 293 GCPVEG----------AIPPSKVAYVAKELHDMGCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHD 356 (452)
Q Consensus 293 g~p~~~----------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~------~P~~v~~li~~l~~~~p~~~l~vH~Hn 356 (452)
|..+.+ .++|+...++++ +.|+|.+.+ ++|.. .|.-=.++++.+++.++ +||.+|+=
T Consensus 139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHGG- 211 (286)
T PRK06801 139 GGDEGGALYGEADSAKFTDPQLARDFVD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHGG- 211 (286)
T ss_pred cCCCCCcccCCcccccCCCHHHHHHHHH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEECC-
Confidence 332211 345565555554 469998887 33221 22223445677777665 47877764
Q ss_pred CcCcHHHHHHHHHHcCCCEEeec
Q 012949 357 TYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~S 379 (452)
-|....+...++.+|++-|+..
T Consensus 212 -Sgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 212 -SGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred -CCCCHHHHHHHHHcCCcEEEeh
Confidence 4777899999999999977653
No 91
>PRK08508 biotin synthase; Provisional
Probab=97.05 E-value=0.22 Score=49.94 Aligned_cols=221 Identities=13% Similarity=0.036 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe-cCCC-CCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccch
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEAT-SFVS-PKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG-~~~s-~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
++.++.++.++...+.|+..+-+. +.-. ++ .+.+.+.+.++.+.. ..+.+++..-.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~-----~~~e~~~ei~~~ik~~~p~l~i~~s~G~--------------- 99 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDD-----KKLEYVAEAAKAVKKEVPGLHLIACNGT--------------- 99 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCc-----ccHHHHHHHHHHHHhhCCCcEEEecCCC---------------
Confidence 699999999999999999888662 2111 11 134555555554321 12222211110
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~-~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
...+.+++.+++|++.+.+-.-.++.+..... +.+.++.+ +.++.|++.|+++...+. +|- -+
T Consensus 100 -------~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l----~~i~~a~~~Gi~v~sg~I--~Gl-GE-- 163 (279)
T PRK08508 100 -------ASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERF----QTCENAKEAGLGLCSGGI--FGL-GE-- 163 (279)
T ss_pred -------CCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHH----HHHHHHHHcCCeecceeE--Eec-CC--
Confidence 13458888999999999987666654333222 34444444 556888999999887666 442 12
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE------cCCc---CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISL------GDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L------~DT~---G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
+++++.+.+..+.+.+.+.|-+ ++|- ...+|.++..+++..|-.+|...|-+-+=-. .+--..-..++.
T Consensus 164 -t~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~-~~~~~~~~~~~~ 241 (279)
T PRK08508 164 -SWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGRE-VVFGERQYEIFE 241 (279)
T ss_pred -CHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChh-hhchhhHHHHHh
Confidence 4788999999999999874432 2221 2367888888888888778875554433100 000113456888
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949 371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t 412 (452)
+||+.+ -++++= -+...+.++-+.+++.+|+..
T Consensus 242 ~g~n~~--~~g~~l-------t~~g~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 242 AGANAI--VIGDYL-------TTKGEAPKKDIEKLKSLGFEI 274 (279)
T ss_pred cCCcce--eecCcc-------cCCCCChHHHHHHHHHcCCCc
Confidence 998752 122221 233355566666888888753
No 92
>PRK01060 endonuclease IV; Provisional
Probab=97.04 E-value=0.17 Score=49.98 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=110.1
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCCC-cccccCCHHHHHHHHHh-c--cCCc---eeEEecchhhhhhhhhhhhhccchhh
Q 012949 150 KVELIRRLVSSGLPVVEATSFVSPK-WVPQLADARDVMEAVRD-L--EGAR---LPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 150 k~~i~~~L~~~Gv~~IEvG~~~s~~-~~p~~~D~e~v~~~i~~-~--~~~~---l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
..+.++.+.++|++.||+... +|. |.+...+.+ .++.+++ + .+++ +++..|-.-. +.....+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~-~~~~lk~~~~~~gl~~~~~~~h~~~~~n-------l~~~d~~~r 84 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL-NIEAFKAACEKYGISPEDILVHAPYLIN-------LGNPNKEIL 84 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH-HHHHHHHHHHHcCCCCCceEEecceEec-------CCCCCHHHH
Confidence 457889999999999999532 222 222112322 2333432 1 2444 3332221000 000000111
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH--HhCCCcEEEEEEeeecCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA--KVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A--k~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
+.......+.++.|.+.|++.|.+...... .....+++++.+.+.++.+ ...| |...|....+....--.
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~ 156 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGR 156 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccC
Confidence 111111234778888999998887644210 0112335777777776654 3345 44445432111101113
Q ss_pred CHHHHHHHHHHHHHCCc-CEEEEcCCcCCC----cH-HHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 301 PPSKVAYVAKELHDMGC-FEISLGDTIGVG----TP-GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Ga-d~I~L~DT~G~~----~P-~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
+++.+.++++.+.. .. -.+++ ||.=.. .| ....++++.+.+.++ +--..+|.||..+.. ..+.
T Consensus 157 ~~~~~~~l~~~v~~-~~~vg~~l-D~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~ 226 (281)
T PRK01060 157 RFEELARIIDGVED-KSRVGVCL-DTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRK 226 (281)
T ss_pred CHHHHHHHHHhcCC-cccEEEEE-eHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCC
Confidence 56777777765532 11 12333 654211 22 345577777776554 334689999987521 0011
Q ss_pred CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
+. +. .+| .|+.+.+.++..|+..|+
T Consensus 227 d~-H~---~~G--------~G~id~~~~~~~L~~~~y 251 (281)
T PRK01060 227 DR-HA---NLG--------EGTIGFDALRYIVHDPRF 251 (281)
T ss_pred Cc-cc---CCc--------CCcCCHHHHHHHHhCccc
Confidence 10 11 222 578999999999998655
No 93
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.03 E-value=0.13 Score=51.64 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
..+.+....+++.-.+.+.+.|=-.++..-++.+ .+.+...++.. ...++++.+.. . +..
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~----~~~~~~~~~~~a~~~~VPV~lHL-D--------H~~------ 80 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYAG----LELLVAMVKAAAERASVPVALHL-D--------HGS------ 80 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C--------CCC------
Confidence 3788899999999999999977665443222222 23333444332 22333432211 0 110
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----- 297 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----- 297 (452)
..+.+..|+++|..-|.+=.|. .+.++.++.-++++++|+..|+.|.+.|-..-|.++.
T Consensus 81 ------~~~~i~~ai~~GftSVMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~ 144 (276)
T cd00947 81 ------SFELIKRAIRAGFSSVMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE 144 (276)
T ss_pred ------CHHHHHHHHHhCCCEEEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence 2358889999999988875443 2468899999999999999999999888876454433
Q ss_pred -CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949 298 -GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 371 (452)
Q Consensus 298 -~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a 371 (452)
..++|+...+++++ .|+|.+.++ -.=|.- .|.-=.++++.+++.++ +||.+|+ .-|+.--....|++.
T Consensus 145 ~~~T~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~ 218 (276)
T cd00947 145 GLLTDPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHG--GSGIPDEQIRKAIKL 218 (276)
T ss_pred ccCCCHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHc
Confidence 14678877777765 488855543 232332 55556678888888875 5787765 558888889999999
Q ss_pred CCCEEee
Q 012949 372 GISTVDC 378 (452)
Q Consensus 372 Ga~~VD~ 378 (452)
|+.-|+.
T Consensus 219 Gi~KiNi 225 (276)
T cd00947 219 GVCKINI 225 (276)
T ss_pred CCeEEEe
Confidence 9986654
No 94
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=97.01 E-value=0.05 Score=53.49 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
.-.+.++.+.++|++.||+.......+.|.+. +.+++.+.++. .++++..+.+..... ...+.......-+...
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~---~~~~~~~~~~~r~~~~ 89 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGY---PYNMMLGDEHMRRESL 89 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCc---CccccCCCHHHHHHHH
Confidence 35667788899999999996321111122221 23333333332 355555544311000 0000000000000000
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCHHH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSK 304 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~e~ 304 (452)
....+.++.|...|++.|.+....... ........+...+.+.++.++|++.|+.+. +... .|..+ ..+++.
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE~~--~~~~~~~~~t~~~ 163 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGY--LTPPNVIWGRLAENLSELCEYAENIGMDLI--LEPL--TPYESNVVCNAND 163 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EecC--CCCcccccCCHHH
Confidence 112246788889999999885431100 000011245667778888999999998654 3321 11111 124556
Q ss_pred HHHHHHHHHHCCc-CEEEEcCCcCC-CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 305 VAYVAKELHDMGC-FEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 305 l~~~a~~l~~~Ga-d~I~L~DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
+.++++.. +- ..-.+.|+.=. ....++.+.++. ++.....+|.+|..+-. +
T Consensus 164 ~~~l~~~~---~~~~v~~~~D~~h~~~~~~~~~~~i~~----~~~rI~~vHi~D~~~~~---------------~----- 216 (275)
T PRK09856 164 VLHALALV---PSPRLFSMVDICAPYVQAEPVMSYFDK----LGDKLRHLHIVDSDGAS---------------D----- 216 (275)
T ss_pred HHHHHHHc---CCCcceeEEeecchhcCCCCHHHHHHH----hCCcEEEEEEEcCCCCC---------------C-----
Confidence 66666543 32 22223477432 122233333333 33334789999987521 1
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 383 LGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 383 lGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
+...+| .|+.+..+++..|+..|++
T Consensus 217 ---~~~~pG-~G~id~~~i~~~L~~~gy~ 241 (275)
T PRK09856 217 ---THYIPG-EGKMPLRELMRDIIDRGYE 241 (275)
T ss_pred ---CCcCCC-CCCCCHHHHHHHHHHcCCC
Confidence 112233 5899999999999987765
No 95
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.00 E-value=0.1 Score=52.68 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=133.5
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS 211 (452)
Q Consensus 135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~ 211 (452)
|++.+..+. .++.+....+++.-.+.+.+.|=-.++..-++.+ .+.+...++.. ...++++.+.. .
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHL-D------ 82 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHL-D------ 82 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C------
Confidence 344455443 4788999999999999999988765543322222 23333434332 23334432211 0
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
+ +. ..+.+.+|+++|..-|.+=.|. .+.++.++.-++++++|+..|+.|.+.|-..
T Consensus 83 --H--~~----------~~e~i~~ai~~GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i 138 (284)
T PRK12737 83 --H--HE----------DLDDIKKKVRAGIRSVMIDGSH----------LSFEENIAIVKEVVEFCHRYDASVEAELGRL 138 (284)
T ss_pred --C--CC----------CHHHHHHHHHcCCCeEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 0 10 2358899999999988764432 2568999999999999999999999888876
Q ss_pred ecCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949 292 VGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 359 (452)
Q Consensus 292 ~g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G 359 (452)
-|.++. ..++|+...++++. .|+|.+.++= .=|.- .|.-=.++++.+++.++ +||.+|+ .-|
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG 212 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASG 212 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCC
Confidence 555443 14688877777755 4888655532 22332 34444567888888765 4777665 567
Q ss_pred cHHHHHHHHHHcCCCEEee
Q 012949 360 QSLPNILISLQMGISTVDC 378 (452)
Q Consensus 360 lA~ANaLaAl~aGa~~VD~ 378 (452)
+.-.....|++.|+.-|+.
T Consensus 213 ~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 213 VPDEDVKKAISLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHCCCeEEEe
Confidence 7788899999999987654
No 96
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.99 E-value=0.047 Score=54.45 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHHhc----cCCceeEEe-cchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVRDL----EGARLPVLT-PNLKV 206 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~~~----~~~~l~~l~-~~~~~ 206 (452)
-+.+.-+++++.|.+.|+|.||+|+|-| |. -.|.. ...++.++.++.+ .++.+..|+ -|.-
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi- 106 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI- 106 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH-
Confidence 5789999999999999999999998754 32 01111 1224455555543 122232222 1110
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 286 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~ 286 (452)
|.. ...+.++.+.++|++.+-+.+-. ++...++.+.++++|+....
T Consensus 107 -------~~~-----------Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 107 -------FNY-----------GIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred -------HHh-----------hHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE
Confidence 111 12246788999999999887532 13334566888899998642
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEE
Q 012949 287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~v 352 (452)
+..| .++.+.+.++++... | +..+...-++|.-.| ..+.++++.+|+.. +.|+.+
T Consensus 153 -----lvaP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v 210 (265)
T COG0159 153 -----LVAP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV 210 (265)
T ss_pred -----EeCC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE
Confidence 1122 234566666665443 3 567888888898888 33899999999876 345554
No 97
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.99 E-value=0.12 Score=52.06 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.+....++++..+.+.+.|=..+...-++.+. .+.+...++.+ .... .++.... .|.
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhl-------------DH~-- 84 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHL-------------DHG-- 84 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEEC-------------CCC--
Confidence 37889999999999999999888765533232221 22333333332 1222 3332211 010
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-----
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV----- 296 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~----- 296 (452)
...+.++.|++.|++.|.+=.+. .+.++.++..++++++|+..|+.|.+.|-..-|.++
T Consensus 85 ------~~~e~i~~ai~~Gf~sVmid~s~----------l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~ 148 (282)
T TIGR01859 85 ------SSYESCIKAIKAGFSSVMIDGSH----------LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEK 148 (282)
T ss_pred ------CCHHHHHHHHHcCCCEEEECCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccc
Confidence 02347889999999988765432 256788999999999999999988766654222222
Q ss_pred -CCCCCHHHHHHHHHHHHHCCcCEEEEc-CC-cCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949 297 -EGAIPPSKVAYVAKELHDMGCFEISLG-DT-IGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 371 (452)
Q Consensus 297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~-DT-~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a 371 (452)
.+.++++.+.++.+ +.|+|.|.++ -| -|.. .|.-=.++++.+++.++ +||..| ..-|+-..|...++++
T Consensus 149 ~~~~t~~eea~~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~h--GgSGi~~e~i~~~i~~ 222 (282)
T TIGR01859 149 EAELADPDEAEQFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLH--GASGIPEEQIKKAIKL 222 (282)
T ss_pred ccccCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEE--CCCCCCHHHHHHHHHc
Confidence 22457776655553 2489987753 11 1111 13223556677777765 466555 5668888999999999
Q ss_pred CCCEEeec
Q 012949 372 GISTVDCS 379 (452)
Q Consensus 372 Ga~~VD~S 379 (452)
|++-|+..
T Consensus 223 Gi~kiNv~ 230 (282)
T TIGR01859 223 GIAKINID 230 (282)
T ss_pred CCCEEEEC
Confidence 99977543
No 98
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.97 E-value=0.21 Score=47.60 Aligned_cols=187 Identities=22% Similarity=0.214 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~~ 221 (452)
..+.++..++++...+.|++.+.+. |.+++ ...+.++. .++.+...+ |.- ..+.+
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~------~~~~~l~~-~~~~v~~~~~fp~g-----------~~~~~- 69 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVN----PCFVP------LAREALKG-SGVKVCTVIGFPLG-----------ATTTE- 69 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc----HHHHH------HHHHHcCC-CCcEEEEEEecCCC-----------CCcHH-
Confidence 4588999999999999999999884 21111 11222222 223333222 211 11111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
.....++.|++.|++.|.+....... .....++.++.+.++++.|. |+.+.+-+. .+..+
T Consensus 70 ------~k~~eve~A~~~GAdevdvv~~~g~~-----~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e-------~~~l~ 129 (203)
T cd00959 70 ------VKVAEAREAIADGADEIDMVINIGAL-----KSGDYEAVYEEIAAVVEACG--GAPLKVILE-------TGLLT 129 (203)
T ss_pred ------HHHHHHHHHHHcCCCEEEEeecHHHH-----hCCCHHHHHHHHHHHHHhcC--CCeEEEEEe-------cCCCC
Confidence 12246889999999999998865432 12234667788888888776 766654222 12346
Q ss_pred HHHHHHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 302 PSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
++.+.+.++.+.++|+|.|-.. =+.+..+|+.+..+-+.++..+|. .+.==.+ | ...++.-+++|++++-+|
T Consensus 130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~i-k~aGGik-t----~~~~l~~~~~g~~riG~s 203 (203)
T cd00959 130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGV-KAAGGIR-T----LEDALAMIEAGATRIGTS 203 (203)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceE-EEeCCCC-C----HHHHHHHHHhChhhccCC
Confidence 7899999999999999988876 222345778877776666632321 1211111 3 466677778899887553
No 99
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.96 E-value=0.072 Score=51.32 Aligned_cols=180 Identities=14% Similarity=0.068 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC-CceeEEe-cchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-ARLPVLT-PNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
++..++++.+.++|.|.|++|.-.. -+.+.+.+.++.+.. ..++++. |+--
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~g-------vt~~~~~~~v~~ik~~~~lPvilfp~~~-------------------- 63 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLG-------IVESNLDQTVKKIKKITNLPVILFPGNV-------------------- 63 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCC-------CCHHHHHHHHHHHHhhcCCCEEEECCCc--------------------
Confidence 5567789999999999999984211 122334333333322 3455544 4321
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE--EEEEEeeecCCCC------
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV--RGYVSCVVGCPVE------ 297 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V--~~~l~~~~g~p~~------ 297 (452)
..+..++|-+-+..=.| ..+.+..+..-.+++...|+.|.++ ++|+...-++-.+
T Consensus 64 ---------~~i~~~aD~~~~~slln--------s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~ 126 (205)
T TIGR01769 64 ---------NGLSRYADAVFFMSLLN--------SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAR 126 (205)
T ss_pred ---------cccCcCCCEEEEEEeec--------CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcc
Confidence 01223566554432111 0122344444334455568888875 5776542221111
Q ss_pred --CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCC
Q 012949 298 --GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGIS 374 (452)
Q Consensus 298 --~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~ 374 (452)
-+.++|....++..+..+|++.|+|.|..|...|-. .++++.+++... .++.+= .|.-. ..+..++.+|||
T Consensus 127 ~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~vG----GGIrs~e~a~~l~~~GAD 200 (205)
T TIGR01769 127 EIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN-PETISLVKKASG-IPLIVG----GGIRSPEIAYEIVLAGAD 200 (205)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhhC-CCEEEe----CCCCCHHHHHHHHHcCCC
Confidence 124778889999999999999999999988854433 667777777652 344331 12222 344455578988
Q ss_pred EEe
Q 012949 375 TVD 377 (452)
Q Consensus 375 ~VD 377 (452)
.|=
T Consensus 201 ~VV 203 (205)
T TIGR01769 201 AIV 203 (205)
T ss_pred EEE
Confidence 763
No 100
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.96 E-value=0.13 Score=51.85 Aligned_cols=202 Identities=13% Similarity=0.112 Sum_probs=132.9
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~ 212 (452)
.+.+..+. .++.+....+++.-.+.+.+.|--.++..-++. ..+.+...++.. ...++++.+.. .
T Consensus 13 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHL-D------- 80 (282)
T TIGR01858 13 AGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHL-D------- 80 (282)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence 34444443 478899999999999999998877654332222 233344444432 23344443211 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
+ + ...+.+.+|+++|..-|.+=.|.- +.++.++.-++++++|+..|+.|.+.|-..-
T Consensus 81 -H--g----------~~~e~i~~ai~~GFtSVM~DgS~l----------p~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 81 -H--H----------ESLDDIRQKVHAGVRSAMIDGSHF----------PFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred -C--C----------CCHHHHHHHHHcCCCEEeecCCCC----------CHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 0 1 023588999999999888754432 4688999999999999999999998888764
Q ss_pred cCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949 293 GCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 360 (452)
Q Consensus 293 g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl 360 (452)
|.++. ..++|+...++++ +-|+|.+.++ -.=|.- .|.-=.++++.+++.++ +||.+|+ .-|+
T Consensus 138 g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHG--gSG~ 211 (282)
T TIGR01858 138 GVEDDLSVDEEDALYTDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHG--ASDV 211 (282)
T ss_pred CccCCCccccchhccCCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEec--CCCC
Confidence 54443 1467777776654 5588865543 222221 24445677888888774 5787766 5566
Q ss_pred HHHHHHHHHHcCCCEEee
Q 012949 361 SLPNILISLQMGISTVDC 378 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~ 378 (452)
.-.....|+..|+.-|+.
T Consensus 212 ~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 212 PDEDVRRTIELGICKVNV 229 (282)
T ss_pred CHHHHHHHHHcCCeEEEe
Confidence 788899999999986643
No 101
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.95 E-value=0.12 Score=52.24 Aligned_cols=194 Identities=17% Similarity=0.190 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc--eeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR--LPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~--l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+....+++.-.+.+.+.|--.++..-++.+ ..+.+...++.. ...+ +++.+. +. .+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~vPV~lH-LD----------Hg--- 87 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMS---GFYTVVKMVEGLMHDLNITIPVAIH-LD----------HG--- 87 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCCEEEE-CC----------CC---
Confidence 4788999999999999999988766543222211 122333333321 1222 233221 00 01
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--- 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--- 297 (452)
...+.+.+|+++|..-|.+=.|. .+.++.++.-++++++|+..|+.|++.|-..-|.++.
T Consensus 88 -------~~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~ 150 (286)
T PRK08610 88 -------SSFEKCKEAIDAGFTSVMIDASH----------SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVA 150 (286)
T ss_pred -------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCC
Confidence 12358889999999988875443 2468899999999999999999999988876444442
Q ss_pred C---CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 298 G---AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 298 ~---r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
. .++|+...++++ +-|+|.+.++ -.=|.- .|.-=.++++.+++.++ +||.+|+ .-|..-.....|+.
T Consensus 151 ~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~ 224 (286)
T PRK08610 151 DGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIP 224 (286)
T ss_pred cccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHH
Confidence 1 368887777775 4588855443 222222 24333567777777774 5787765 57888889999999
Q ss_pred cCCCEEe
Q 012949 371 MGISTVD 377 (452)
Q Consensus 371 aGa~~VD 377 (452)
.|+.-|+
T Consensus 225 ~GI~KiN 231 (286)
T PRK08610 225 FGTAKIN 231 (286)
T ss_pred CCCeEEE
Confidence 9987554
No 102
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.052 Score=54.57 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=138.4
Q ss_pred HHHHHHHCCCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949 153 LIRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 153 i~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~ 227 (452)
-+..+.++|++.+=.++.. .....|- ....+++++.++++.. +.+++++..- .||+. +.++++
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~d-------tGfG~-~~nvar---- 97 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDID-------TGFGE-ALNVAR---- 97 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEecc-------CCCCc-HHHHHH----
Confidence 3677889999999987531 1111222 2345788888887754 4566665322 46777 666655
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+..+.++|+.-|+|-+.+-+- |+..+-=.+.+++.++++.+++.+++..+-+.+ =..+++. + -.+.
T Consensus 98 ----tV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~ 167 (289)
T COG2513 98 ----TVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDD 167 (289)
T ss_pred ----HHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHH
Confidence 7888999999999999877652 211222246888888887777766664433221 0001110 1 1345
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 384 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG 384 (452)
..+=++...++|||.|... |.-++++++.+.+.++ +|. ++-+=-+--..+-..--|+ ++|+++|-..+..+
T Consensus 168 AI~Ra~AY~eAGAD~if~~---al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~~~~~L~--~~Gv~~V~~~~~~~- 238 (289)
T COG2513 168 AIERAQAYVEAGADAIFPE---ALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLLTVAELA--ELGVKRVSYGLTAF- 238 (289)
T ss_pred HHHHHHHHHHcCCcEEccc---cCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCcCHHHHH--hcCceEEEECcHHH-
Confidence 5556677789999999875 4566888887777766 443 2333222222333333332 58999998777765
Q ss_pred CCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 385 GCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 385 ecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
|+.+.+++.++..+.+.|-
T Consensus 239 -------raa~~a~~~~~~~i~~~gt 257 (289)
T COG2513 239 -------RAALKAAEQAAREIRREGT 257 (289)
T ss_pred -------HHHHHHHHHHHHHHHhcCc
Confidence 7889999999998887664
No 103
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.94 E-value=0.12 Score=50.24 Aligned_cols=190 Identities=16% Similarity=0.133 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
...+.++..++++...+.|+..+.+- |.|+| ...+.++. .++++...+ +. .+|.....
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVi-gF------P~G~~~~~---- 74 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLKG-SDVKVCTVI-GF------PLGANTTA---- 74 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhCC-CCCeEEEEe-cc------cCCCChHH----
Confidence 35789999999999999999998883 22222 12223321 245554433 11 01111110
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
......+.|++.|+++|.+.+..+-... -..++..+.+..+.+.+ .+..+-+-|. ....+.
T Consensus 75 -----~K~~e~~~Ai~~GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~ 135 (221)
T PRK00507 75 -----VKAFEAKDAIANGADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTD 135 (221)
T ss_pred -----HHHHHHHHHHHcCCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCH
Confidence 1234778899999999999987665311 12455566555555543 3444432222 234567
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
+.+.++++.+.++|+|.|.-.-+. |..+|+.++.+.+.+... +.+..----- -...++.-+++||++|-+|
T Consensus 136 e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~-----~~IKasGGIr-t~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 136 EEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPR-----VGVKASGGIR-TLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-----ceEEeeCCcC-CHHHHHHHHHcCcceEccC
Confidence 788999999999999955554443 345677766665554332 3333322111 1466777889999998776
No 104
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.93 E-value=0.1 Score=50.53 Aligned_cols=152 Identities=26% Similarity=0.265 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-+++++.|.+.|++.||+++ .+| +..+.++.+++ .++..+.+-+ .
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~-------~~~~~I~~l~~~~p~~~IGAGT---V------------------ 74 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL-RTP-------AALEAIRLIAKEVPEALIGAGT---V------------------ 74 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCc-------cHHHHHHHHHHHCCCCEEEEee---c------------------
Confidence 5889999999999999999999995 333 23445555553 3443333211 1
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.+.++++.|+++|.+.+..... + .+++++|++.|+... | +-.+|.
T Consensus 75 ----l~~~~a~~a~~aGA~FivsP~~-~-------------------~~vi~~a~~~~i~~i---------P--G~~Tpt 119 (212)
T PRK05718 75 ----LNPEQLAQAIEAGAQFIVSPGL-T-------------------PPLLKAAQEGPIPLI---------P--GVSTPS 119 (212)
T ss_pred ----cCHHHHHHHHHcCCCEEECCCC-C-------------------HHHHHHHHHcCCCEe---------C--CCCCHH
Confidence 1235899999999997764421 1 266788999998754 1 233455
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
+ +..+.++|++.|.+-+..=..- ...++.++.-+|.++|- =+=|....|.-.=+.+|
T Consensus 120 E----i~~a~~~Ga~~vKlFPa~~~gg----~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 120 E----LMLGMELGLRTFKFFPAEASGG----VKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP 176 (212)
T ss_pred H----HHHHHHCCCCEEEEccchhccC----HHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence 4 4457889999999954210111 35677778778875554 35677778888888899
No 105
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.91 E-value=0.11 Score=52.47 Aligned_cols=202 Identities=13% Similarity=0.140 Sum_probs=132.3
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~ 212 (452)
++.+..+. .++.+....+++.-.+.+.+.|--.++..-++. ..+.+...++.. ...++++.+.. .
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHL-D------- 82 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHL-D------- 82 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence 34444443 478899999999999999998776554322222 223333444432 23344443211 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
++. ..+.+++|+++|..-|.+=.|. .+.++.++.-++++++|+..|+.|.+.|-..-
T Consensus 83 -Hg~------------~~e~i~~Ai~~GftSVM~DgS~----------l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 139 (284)
T PRK09195 83 -HHE------------KFDDIAQKVRSGVRSVMIDGSH----------LPFAQNISLVKEVVDFCHRFDVSVEAELGRLG 139 (284)
T ss_pred -CCC------------CHHHHHHHHHcCCCEEEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 110 2358899999999988864442 34688999999999999999999998888764
Q ss_pred cCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949 293 GCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 360 (452)
Q Consensus 293 g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl 360 (452)
|.++. ..++|+...++++ +.|+|.+.++ -.=|.- .|.-=.++++.+++.++ +||.+|+= -|.
T Consensus 140 g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGg--SG~ 213 (284)
T PRK09195 140 GQEDDLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGA--SGL 213 (284)
T ss_pred CcccCcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecC--CCC
Confidence 44443 1467877777765 4588855543 233332 34444667888888775 57877764 477
Q ss_pred HHHHHHHHHHcCCCEEee
Q 012949 361 SLPNILISLQMGISTVDC 378 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~ 378 (452)
.-.....|+..|+.-|+.
T Consensus 214 ~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 214 PTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CHHHHHHHHHcCCeEEEe
Confidence 788999999999886653
No 106
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.90 E-value=0.031 Score=54.13 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=86.1
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
..++.|++.|++.|.+.....+. +.++.++.+.++.+.|++.|+++.+... ..|.......+++.+...++
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~-~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMY-PRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCCcccCccCHHHHHHHHH
Confidence 36889999999988655433221 2457788899999999999999865432 12221112234567777788
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC---CCcCcHHHHHHHHHHcCCCEEeec
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H---nd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
.+.++|+|.|.+.=|. .++. ++.+.+..|. |+-+=.. .|..-++.|+-.++++||+.|-..
T Consensus 151 ~a~~~GaD~Ik~~~~~---~~~~----~~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 151 IGAELGADIVKTKYTG---DAES----FKEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHHCCCEEEecCCC---CHHH----HHHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 8999999999995332 2344 3444444442 3433232 455557899999999999977443
No 107
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=96.90 E-value=0.083 Score=54.35 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++..++++.+.+.|+..|.++. .- |-+ .|..++++.+++. +..+...+.+..
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~ii~~~~~~-g~~~~l~TNG~l----------------- 92 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSG-GE----PLARPDLVELVAHARRL-GLYTNLITSGVG----------------- 92 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeC-cc----ccccccHHHHHHHHHHc-CCeEEEEeCCcc-----------------
Confidence 58999999999999999998887753 22 222 2445566666542 333333332221
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
.+.+.++...+.|++.|.|.+-.. + .|.+ ++. ...+++++.+.++.+++.|+.+.++. ++ ++.
T Consensus 93 -----l~~e~~~~L~~~g~~~v~iSldg~~~e~~d~--~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~--vv-----~~~ 157 (358)
T TIGR02109 93 -----LTEARLDALADAGLDHVQLSFQGVDEALADR--IAG-YKNAFEQKLAMARAVKAAGLPLTLNF--VI-----HRH 157 (358)
T ss_pred -----CCHHHHHHHHhCCCCEEEEeCcCCCHHHHHH--hcC-CccHHHHHHHHHHHHHhCCCceEEEE--Ee-----ccC
Confidence 123466778889999999876443 2 3332 221 23467777788899999999876433 33 345
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE
Q 012949 301 PPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L 322 (452)
+.+++.++++.+.+.|++.+.+
T Consensus 158 N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 158 NIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 6788888999999999998876
No 108
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.88 E-value=0.14 Score=51.66 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
....+....+++.-.+.+-+.|--.++..-++. ..+.+...++.. ...++++.+.- . .+
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~----g~~~~~~~~~~~A~~~~vPV~lHL-D----------H~----- 84 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLS----GYDYIYEIVKRHADKMDVPVSLHL-D----------HG----- 84 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-c----------CC-----
Confidence 478888899999999999998877654322211 233344444432 22333332210 0 01
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----- 297 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----- 297 (452)
...+.+++|+++|.+-|.+=.|. .+.++.++.-++++++|+..|+.|++.|-..-|.++.
T Consensus 85 -----~~~e~i~~Ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 85 -----KTFEDVKQAVRAGFTSVMIDGAA----------LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred -----CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 12358889999999999884332 3568899999999999999999998888876455432
Q ss_pred -CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 298 -GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 298 -~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
..++|+...++++ +.|+|.+.++= .=|.-. |.-=.++++.+++..+ +||.+|+= -|..-.....|+..|+
T Consensus 150 ~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi 223 (283)
T PRK07998 150 DCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGG--SGIPPEILRSFVNYKV 223 (283)
T ss_pred cccCCHHHHHHHHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCC--CCCCHHHHHHHHHcCC
Confidence 1367877766664 44888554432 222211 4333577888888775 57887764 5777788899999998
Q ss_pred CEEee
Q 012949 374 STVDC 378 (452)
Q Consensus 374 ~~VD~ 378 (452)
.-|+.
T Consensus 224 ~KiNi 228 (283)
T PRK07998 224 AKVNI 228 (283)
T ss_pred cEEEE
Confidence 86643
No 109
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=96.87 E-value=0.16 Score=52.78 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++..++++.+.+.|+..|.++. .- |-+ .|..++++.+++. +......+-+..
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~il~~~~~~-g~~~~i~TNG~l----------------- 101 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSG-GE----PLLRKDLEELVAHAREL-GLYTNLITSGVG----------------- 101 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEC-Cc----cCCchhHHHHHHHHHHc-CCcEEEECCCcc-----------------
Confidence 57899999999999999998887753 22 222 2444555555542 333332222211
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
.+.+.++...+.|++.|.|.+... +.|.+ .-|.. .+++++.+.++.+++.|++|.+.. ++ ++.
T Consensus 102 -----l~~~~~~~L~~~g~~~v~iSldg~~~e~~d~-irg~~--g~f~~~~~~i~~l~~~g~~v~i~~--vv-----~~~ 166 (378)
T PRK05301 102 -----LTEARLAALKDAGLDHIQLSFQDSDPELNDR-LAGTK--GAFAKKLAVARLVKAHGYPLTLNA--VI-----HRH 166 (378)
T ss_pred -----CCHHHHHHHHHcCCCEEEEEecCCCHHHHHH-HcCCC--chHHHHHHHHHHHHHCCCceEEEE--Ee-----ecC
Confidence 123466778889999999887543 33322 11211 245666677889999999876433 32 345
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc
Q 012949 301 PPSKVAYVAKELHDMGCFEISLG 323 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~ 323 (452)
+.+.+.++++.+.+.|++.+.+.
T Consensus 167 N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 167 NIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 67888899999999999988774
No 110
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.87 E-value=0.17 Score=51.15 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.+....+++.-.+.+.+.|--.++..-++.+ .+.+...++.. ...++++.+.. . + +
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g----~~~~~~~~~~~A~~~~VPValHL-D--------H--~----- 84 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAG----IEYISAMVRTAAEKASVPVALHL-D--------H--G----- 84 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C--------C--C-----
Confidence 4788999999999999999988766553322222 23333333322 23334432211 0 0 1
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---C-
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---G- 298 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~- 298 (452)
...+.+.+|+++|..-|.+=.|. .+.+|.++.-++++++|+..|+.|.+.|-.+-|.++. .
T Consensus 85 -----~~~e~i~~ai~~GftSVM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~ 149 (284)
T PRK12857 85 -----TDFEQVMKCIRNGFTSVMIDGSK----------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDE 149 (284)
T ss_pred -----CCHHHHHHHHHcCCCeEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCccc
Confidence 02358889999999988875442 2468999999999999999999999888876454442 1
Q ss_pred ----CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 299 ----AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 299 ----r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
.++|+...++++ +.|+|.+.++ -.=|.- .|.--.++++.+++.++ +||.+|+ .-|+.-.....|++
T Consensus 150 ~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~ 223 (284)
T PRK12857 150 REAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHG--SSGVPDEAIRKAIS 223 (284)
T ss_pred chhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHH
Confidence 457777776664 3488855543 222322 35555678888888775 5787766 55888889999999
Q ss_pred cCCCEEee
Q 012949 371 MGISTVDC 378 (452)
Q Consensus 371 aGa~~VD~ 378 (452)
.|+.-|+.
T Consensus 224 ~Gi~KiNi 231 (284)
T PRK12857 224 LGVRKVNI 231 (284)
T ss_pred cCCeEEEe
Confidence 99886653
No 111
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.85 E-value=0.031 Score=56.41 Aligned_cols=193 Identities=21% Similarity=0.232 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.+....++++-.+.+.+.|--.++..-++. ..+.+...++.. ....+++.+.. . .+.
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHL-D----------H~~---- 84 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHL-D----------HGK---- 84 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEE-E----------EE-----
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeec-c----------cCC----
Confidence 478899999999999999997766543211111 112333333322 12233432210 0 010
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC----
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---- 298 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~---- 298 (452)
..+.+++|+++|.+-|.+=.|. .+.+|.++.-++++++|+..|+.|.+.|-..-|.++..
T Consensus 85 ------~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~ 148 (287)
T PF01116_consen 85 ------DFEDIKRAIDAGFTSVMIDGSA----------LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEE 148 (287)
T ss_dssp ------SHHHHHHHHHHTSSEEEEE-TT----------S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSST
T ss_pred ------CHHHHHHHHHhCcccccccCCc----------CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccc
Confidence 2358899999999998764442 34688999999999999999999999998875554421
Q ss_pred -----CCCHHHHHHHHHHHHHCCcCEEEEcCCcC------CC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949 299 -----AIPPSKVAYVAKELHDMGCFEISLGDTIG------VG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 365 (452)
Q Consensus 299 -----r~d~e~l~~~a~~l~~~Gad~I~L~DT~G------~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa 365 (452)
.++|+...+++++ .|+|.+.+ ++| -. .|.-=.++++.+++.+|++||.+| -.-|+.-...
T Consensus 149 ~~~~~~TdP~~a~~Fv~~---TgvD~LAv--aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlH--GgSG~~~e~~ 221 (287)
T PF01116_consen 149 ETESLYTDPEEAKEFVEE---TGVDALAV--AIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLH--GGSGLPDEQI 221 (287)
T ss_dssp T-TTCSSSHHHHHHHHHH---HTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEES--SCTTS-HHHH
T ss_pred cccccccCHHHHHHHHHH---hCCCEEEE--ecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEE--CCCCCCHHHH
Confidence 3578777777654 48997555 344 22 555557788999998855577765 4678888899
Q ss_pred HHHHHcCCCEEee
Q 012949 366 LISLQMGISTVDC 378 (452)
Q Consensus 366 LaAl~aGa~~VD~ 378 (452)
..|+..|+.-|+.
T Consensus 222 ~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 222 RKAIKNGISKINI 234 (287)
T ss_dssp HHHHHTTEEEEEE
T ss_pred HHHHHcCceEEEE
Confidence 9999999886643
No 112
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.85 E-value=0.35 Score=45.47 Aligned_cols=175 Identities=18% Similarity=0.144 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.+.+.-.+.++.+.+.|+++||++.--.+ ++|.+....+.++.+++..+..+.+ ++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~-~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~------------------ 68 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGH-FVPNLTFGPPVLEALRKYTDLPIDVHLMVENP------------------ 68 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH------------------
Confidence 45567789999999999999999721100 1122222234555665433333322 22211
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
.+.++.+.++|++.|.+....++ .....++.+|+.|+.+...++ + .++.
T Consensus 69 -------~~~~~~~~~~gadgv~vh~~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~ 117 (210)
T TIGR01163 69 -------DRYIEDFAEAGADIITVHPEASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPL 117 (210)
T ss_pred -------HHHHHHHHHcCCCEEEEccCCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCH
Confidence 13678888999999887543222 224556888899988653221 1 1233
Q ss_pred HHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949 303 SKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS 374 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~ 374 (452)
+.+.++. .++|.|.+ +-+.|...+....+.++.+++..+ ..++.+ .-|.-..|.-.+++.||+
T Consensus 118 e~~~~~~-----~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v----~GGI~~env~~l~~~gad 188 (210)
T TIGR01163 118 EFLEYVL-----PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV----DGGVNDDNARELAEAGAD 188 (210)
T ss_pred HHHHHHH-----hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHcCCC
Confidence 3333332 35677665 333443223334455566655432 224444 237778888888999999
Q ss_pred EEee
Q 012949 375 TVDC 378 (452)
Q Consensus 375 ~VD~ 378 (452)
.|=+
T Consensus 189 ~iiv 192 (210)
T TIGR01163 189 ILVA 192 (210)
T ss_pred EEEE
Confidence 6533
No 113
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.84 E-value=0.2 Score=50.71 Aligned_cols=193 Identities=13% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.+....+++.-.+.+-+.|--.++..-++. ..+.+...++.+ ...++++.+.. . ++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHL-D--------Hg------- 84 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHL-D--------HH------- 84 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C--------CC-------
Confidence 478899999999999999998877554322211 223333344322 22334432211 0 11
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----C
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G 298 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----~ 298 (452)
...+.+.+|+++|..-|.+=.|. .+.+|.++.-++++++|+..|+.|.+.|-..-|.++. .
T Consensus 85 -----~~~e~i~~ai~~GFtSVM~DgS~----------lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 149 (286)
T PRK12738 85 -----ESLDDIRRKVHAGVRSAMIDGSH----------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA 149 (286)
T ss_pred -----CCHHHHHHHHHcCCCeEeecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Confidence 02358889999999988875443 2468999999999999999999999888876454442 1
Q ss_pred ----CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949 299 ----AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 370 (452)
Q Consensus 299 ----r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~ 370 (452)
.++|+...++++. .|+|.+.++ -.=|.- .|.-=.++++.+++.++ +||.+|+ .-|..-.+...|++
T Consensus 150 ~~~~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHG--gSG~~~e~~~kai~ 223 (286)
T PRK12738 150 ESAFLTDPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIE 223 (286)
T ss_pred chhcCCCHHHHHHHHHH---hCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHH
Confidence 4577777766543 488855543 222222 45555778888888874 5787776 45666788999999
Q ss_pred cCCCEEe
Q 012949 371 MGISTVD 377 (452)
Q Consensus 371 aGa~~VD 377 (452)
.|+.-|+
T Consensus 224 ~GI~KiN 230 (286)
T PRK12738 224 LGVTKVN 230 (286)
T ss_pred cCCeEEE
Confidence 9988664
No 114
>PRK05926 hypothetical protein; Provisional
Probab=96.83 E-value=0.16 Score=53.03 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=131.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
..++.++.++.++.. +.|+..|-+-....|.. + +....++++.+++ .+++.+.++.+.--.-+.++.+
T Consensus 97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~-~-~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~-------- 165 (370)
T PRK05926 97 WFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC-N-LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDN-------- 165 (370)
T ss_pred ccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC-C-HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcC--------
Confidence 458999999999998 79999888865444431 0 1112344445553 3455555544321000000000
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEE--ecCChHHHh-hh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIF--ASASEAFSK-SN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~--~s~Sd~~~~-~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
....+.+++.+++|++.+..- -..+|...+ .. -+++.++- .++++.|+++|+++.+.+.+ | +.+
T Consensus 166 -----~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~----l~~i~~a~~~Gi~~~sgmi~--G-~gE 233 (370)
T PRK05926 166 -----LPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGF----LEIHKTAHSLGIPSNATMLC--Y-HRE 233 (370)
T ss_pred -----CCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCcccCceEE--e-CCC
Confidence 011246889999999977642 112232221 11 13444433 46779999999999877553 3 223
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEE-----EE-----cCCc--------CCCcHHHHHHHHHHHH---HhCCCccEEEEeCC
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEI-----SL-----GDTI--------GVGTPGTVVPMLEAVM---AVVPVEKLAVHLHD 356 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I-----~L-----~DT~--------G~~~P~~v~~li~~l~---~~~p~~~l~vH~Hn 356 (452)
++++.++.+..+.+.+.+.+ .. .+|- +..++.....+++..| .++|.+...+ +
T Consensus 234 ---t~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~ 307 (370)
T PRK05926 234 ---TPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---N 307 (370)
T ss_pred ---CHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---h
Confidence 46788888888887765433 21 2332 1234444444444333 3344444444 3
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 411 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~ 411 (452)
.. +..-+..||.+||+-+++|+..=--=+.|+...+ -.+.+++..+.+..|..
T Consensus 308 ~~--G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~ 361 (370)
T PRK05926 308 YL--GIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRI 361 (370)
T ss_pred hc--CHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 34 4557788999999999999875221111221222 23567777777766653
No 115
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.81 E-value=0.2 Score=51.86 Aligned_cols=222 Identities=16% Similarity=0.091 Sum_probs=125.6
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCC---H------HHHHHHHHhc-cCCceeEEe
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LAD---A------RDVMEAVRDL-EGARLPVLT 201 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D---~------e~v~~~i~~~-~~~~l~~l~ 201 (452)
++.+..+. .+..+....+++.-.+...+.|--.+...-++.+. +.+ . ..+...++.. ...++++.+
T Consensus 18 ~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 97 (350)
T PRK09197 18 ENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL 97 (350)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 34444443 48899999999999999999887765432222111 111 0 0011222211 122333322
Q ss_pred cchhhhhhhhhhhhhcc-chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 202 PNLKVILQRSILFQQCH-ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 202 ~~~~~~i~r~~~~~~~~-~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
.. . ++... .+.+.....+-.+.+++++++|..-|.+=.|. .+.|+.++.-++++++|+..
T Consensus 98 HL-D--------Hg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~----------lpfEeNI~~TkevVe~Ah~~ 158 (350)
T PRK09197 98 HT-D--------HCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE----------EPLEENIEICSKYLERMAKA 158 (350)
T ss_pred EC-C--------CCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC----------CCHHHHHHHHHHHHHHHHHc
Confidence 10 0 00000 00000000000123444444458888654332 34688999999999999999
Q ss_pred CCcEEEEEEeeecCCCCC----------CCCHHHHHHHHHHHH-HCCcC--EEEEcCCcCCC---cHHHHHHHHHHHHHh
Q 012949 281 SIPVRGYVSCVVGCPVEG----------AIPPSKVAYVAKELH-DMGCF--EISLGDTIGVG---TPGTVVPMLEAVMAV 344 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~----------r~d~e~l~~~a~~l~-~~Gad--~I~L~DT~G~~---~P~~v~~li~~l~~~ 344 (452)
|+.|.+.|-..-|.++.. .++|+...+++++.- ..|+| .|.+.-.=|.- .|.--.++++.+++.
T Consensus 159 GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~ 238 (350)
T PRK09197 159 GMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEY 238 (350)
T ss_pred CCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHH
Confidence 999998888765544431 468888877776541 12236 34444444543 244455667777776
Q ss_pred C--------CCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 345 V--------PVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 345 ~--------p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
+ +++||.+|+= -|+.-.....|++.|+.-|+.
T Consensus 239 v~~~~~~~~~~vPLVLHGg--SGipde~i~~ai~~GI~KINi 278 (350)
T PRK09197 239 VSKKFGLPAKPFDFVFHGG--SGSTLEEIREAVSYGVVKMNI 278 (350)
T ss_pred HHHhhCCCCCCCCEEEeCC--CCCCHHHHHHHHHCCCeeEEe
Confidence 6 2567777764 588888999999999986654
No 116
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.80 E-value=0.2 Score=48.14 Aligned_cols=151 Identities=27% Similarity=0.320 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-+++++.|.+.||+.||+++- +| +..+.++.++ +.+++.+.+-+ +
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp-------~a~~~I~~l~~~~~~~~vGAGT-------------------V-- 63 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR-TP-------AALDAIRAVAAEVEEAIVGAGT-------------------I-- 63 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHCCCCEEeeEe-------------------C--
Confidence 47899999999999999999999974 33 2344555554 33443333321 0
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.+.++++.|+++|.+.+.-.. .+ .+++++|++.|+.+. -+-.+|.
T Consensus 64 ----l~~e~a~~ai~aGA~FivSP~-~~-------------------~~vi~~a~~~~i~~i-----------PG~~Tpt 108 (201)
T PRK06015 64 ----LNAKQFEDAAKAGSRFIVSPG-TT-------------------QELLAAANDSDVPLL-----------PGAATPS 108 (201)
T ss_pred ----cCHHHHHHHHHcCCCEEECCC-CC-------------------HHHHHHHHHcCCCEe-----------CCCCCHH
Confidence 124589999999999764221 11 367799999998764 1334565
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHH---HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 374 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v---~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~ 374 (452)
++. .+.++|++.|-+ .|... ..+++.++.-+|+++|- -+=|....|.-.=+.+|+.
T Consensus 109 Ei~----~A~~~Ga~~vK~-------FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 109 EVM----ALREEGYTVLKF-------FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred HHH----HHHHCCCCEEEE-------CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence 544 357789998887 45322 36788888888875554 4567777899999999854
No 117
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.80 E-value=0.05 Score=54.94 Aligned_cols=216 Identities=16% Similarity=0.062 Sum_probs=129.0
Q ss_pred HHHHHHCCCCEEEEecCC-C-CCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 154 IRRLVSSGLPVVEATSFV-S-PKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~-s-~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
++...++|++.+=+++.. + ....|- +-+.+++++.++.+.+ +.+++.+..- .||+. +.++.+
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d-------~GyG~-~~~v~~----- 92 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDAD-------TGFGE-AFNVAR----- 92 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCC-HHHHHH-----
Confidence 456677899999998542 1 112232 2356788888887643 3455544322 35666 555443
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSK 304 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~---~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e~ 304 (452)
.++...++|+..|+|-+.+.+-+.-+.-+ .+.++..++++.+.+..+ +.++.. +..+ |+ .....+.
T Consensus 93 ---tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~I-iART----Da~~~~g~de 162 (285)
T TIGR02317 93 ---TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVI-IART----DARAVEGLDA 162 (285)
T ss_pred ---HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEE-EEEc----CcccccCHHH
Confidence 78889999999999998875421111112 367888888755544333 222221 1111 11 1123566
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE--EEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL--AVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l--~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
..+=++...++|||.|.+. |.-+++++..+.+.+ | .|+ -+-.....++= +.-..-++|+++|-....+
T Consensus 163 AI~Ra~ay~~AGAD~vfi~---g~~~~e~i~~~~~~i----~-~Pl~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~ 232 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPE---ALTSLEEFRQFAKAV----K-VPLLANMTEFGKTPLF--TADELREAGYKMVIYPVTA 232 (285)
T ss_pred HHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHH
Confidence 6666788889999999995 456777776655544 4 244 23322221111 2334456899999877766
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 383 LGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 383 lGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
+ ++-+.++++.+..++..|.
T Consensus 233 ~--------~aa~~a~~~~~~~l~~~g~ 252 (285)
T TIGR02317 233 F--------RAMNKAAEAVYNEIKEHGT 252 (285)
T ss_pred H--------HHHHHHHHHHHHHHHHcCC
Confidence 5 5667888888888876554
No 118
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.79 E-value=0.16 Score=51.36 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCC--ceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGA--RLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~--~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+....+++.-.+.+.+.|--.++..-++. ...+.+...++.. ... ++++.+.. . .+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHL-D----------Hg--- 87 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHL-D----------HG--- 87 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEEC-C----------CC---
Confidence 378899999999999999998876654432321 1123344444322 222 34432211 0 11
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--- 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--- 297 (452)
...+.+.+|+++|..-|.+=.|. .+.+|.++.-++++++|+..|+.|.+.|-..-|.++.
T Consensus 88 -------~~~e~i~~ai~~GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~ 150 (288)
T TIGR00167 88 -------ASEEDCAQAVKAGFSSVMIDGSH----------EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSV 150 (288)
T ss_pred -------CCHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccc
Confidence 12358899999999988875443 2468999999999999999999999888876555443
Q ss_pred -----CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949 298 -----GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 298 -----~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa 367 (452)
..++|+...+++ .+-|+|.+.++ -.=|.- .|. -=.++++.+++.++ +||.+|+ .-|+.-.....
T Consensus 151 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHG--gSG~~~e~~~~ 224 (288)
T TIGR00167 151 ADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHG--GSGIPDEEIKK 224 (288)
T ss_pred ccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHH
Confidence 145777655555 44588866553 222322 244 23557788888775 5788776 45788888999
Q ss_pred HHHcCCCEEe
Q 012949 368 SLQMGISTVD 377 (452)
Q Consensus 368 Al~aGa~~VD 377 (452)
|+..|+.-|+
T Consensus 225 ai~~Gi~KiN 234 (288)
T TIGR00167 225 AISLGVVKVN 234 (288)
T ss_pred HHHcCCeEEE
Confidence 9999987554
No 119
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=96.79 E-value=0.34 Score=47.61 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=111.0
Q ss_pred HHHHHHHHCCCCEEEEecCCCCCccc-ccC--CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 152 ELIRRLVSSGLPVVEATSFVSPKWVP-QLA--DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p-~~~--D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
+.++.+.+.|++.+|+-......+.+ .+. +.+++.+.+++ .++++++..|-.-. +.....++.+.....
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~n-------l~s~d~~~r~~~~~~ 85 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLIN-------LASPDKEKVEKSIER 85 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceec-------CCCCCHHHHHHHHHH
Confidence 45677888999999995432212211 111 12333333332 34556554442100 000001111110011
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
..+.++.|.+.|++.|.+..+.. ...++++.++++.+.++.+-+....|...|....+.+..--.+++.+.++
T Consensus 86 l~~~i~~A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l 158 (273)
T smart00518 86 LIDEIKRCEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEI 158 (273)
T ss_pred HHHHHHHHHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHH
Confidence 23477888889999888754321 12345667766666555433222223433443221111112367777777
Q ss_pred HHHHHHCCcCEEEEcCCc-----CC--CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 309 AKELHDMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
++.+....--.+++ |+. |. .+|+.+.++++.+.+.++ +-...+|+||..+. .|-
T Consensus 159 l~~v~~~~~~g~~l-D~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~------- 220 (273)
T smart00518 159 IDLIKELDRIGVCI-DTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS------- 220 (273)
T ss_pred HHhcCCCCCeEEEE-EccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC-------
Confidence 76653210012222 443 22 247788888888876665 33478999999862 111
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 381 AGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 381 ~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
-+.+-.++| .|..+.+.+...|+..+
T Consensus 221 --~~d~H~~~G-~G~id~~~~~~~l~~~~ 246 (273)
T smart00518 221 --GKDRHENLG-EGYIGFEPFRLLMADKR 246 (273)
T ss_pred --CCccccCCC-CCCCChHHHHHHhhChh
Confidence 111122222 47899999988887643
No 120
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.78 E-value=0.29 Score=47.37 Aligned_cols=189 Identities=18% Similarity=0.179 Sum_probs=117.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccc
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHA 219 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~ 219 (452)
+...+.++..++++...+.|+..+.+- |.|+| ...+.++. .++++...+ |. |.....
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVigFP~---------G~~~~~- 70 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVP------LAKELLKG-TEVRICTVVGFPL---------GASTTD- 70 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHH------HHHHHcCC-CCCeEEEEeCCCC---------CCCcHH-
Confidence 346799999999999999999988883 33332 12223321 245554433 22 111111
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
.....++.|++.|++.|.+.+....+ ..-..++..+.+..+++.+. |..+-+-+. .+.
T Consensus 71 --------~K~~E~~~Av~~GAdEiDvv~n~g~l-----~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE-------~~~ 128 (211)
T TIGR00126 71 --------VKLYETKEAIKYGADEVDMVINIGAL-----KDGNEEVVYDDIRAVVEACA--GVLLKVIIE-------TGL 128 (211)
T ss_pred --------HHHHHHHHHHHcCCCEEEeecchHhh-----hCCcHHHHHHHHHHHHHHcC--CCeEEEEEe-------cCC
Confidence 12347888999999999999875532 12345667777777777764 666554222 123
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
.+.+.+.+.++.+.++|+|-|--.- +.+..+|+++..|-+.+...+ .+..----- -...+++-+++|++++-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v-----~IKaaGGir-t~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTI-----GVKASGGVR-TAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCC-----eEEEeCCCC-CHHHHHHHHHHhhHHhC
Confidence 5567888999999999999887642 224567888777766655433 232221111 23566777788998876
Q ss_pred ec
Q 012949 378 CS 379 (452)
Q Consensus 378 ~S 379 (452)
+|
T Consensus 203 ts 204 (211)
T TIGR00126 203 AS 204 (211)
T ss_pred cc
Confidence 65
No 121
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.78 E-value=0.24 Score=51.01 Aligned_cols=225 Identities=13% Similarity=0.086 Sum_probs=148.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE-ecchhhhhhhhhhhhhccch
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL-TPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l-~~~~~~~i~r~~~~~~~~~~ 220 (452)
..++.++.++-|+...+.|...+.++.....+ + .+.+++.+.++.+. ...+... +.+.
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~--~--~~~~~i~~~v~~Vk~~~~le~c~slG~---------------- 141 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGP--G--RDMEEVVEAIKAVKEELGLEVCASLGM---------------- 141 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccCC--C--ccHHHHHHHHHHHHHhcCcHHhhccCC----------------
Confidence 45889999999999999997777776543211 1 46677777777654 2222211 1221
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
...+..+.++++|++...--.- ..+.|.+.....|.|+=++ .++.+|+.|++|..... +|-.
T Consensus 142 -------l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~----tl~~vk~~Gi~vcsGgI--~GlG---- 204 (335)
T COG0502 142 -------LTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLN----TLENVREAGIEVCSGGI--VGLG---- 204 (335)
T ss_pred -------CCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHH----HHHHHHHcCCccccceE--ecCC----
Confidence 1235788899999998776443 4445555556778886665 45899999999864444 3321
Q ss_pred CCHHHHHHHHHHHHHCC-cCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~G-ad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
-+.++-.+.+..+.+.. ++.|-| ++| .--++|.+.-.+|+..|=.+|...|-+- =..-.+.-.....+
T Consensus 205 Es~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~ 283 (335)
T COG0502 205 ETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALA 283 (335)
T ss_pred CCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHH
Confidence 24567677788888887 776654 222 3356778888889998888897433332 22233444457788
Q ss_pred HHcCCCEEeecc-cCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949 369 LQMGISTVDCSV-AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV 414 (452)
Q Consensus 369 l~aGa~~VD~Sv-~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i 414 (452)
+.+||+.|=++. ... +.+.+.|+-...++.+|.....
T Consensus 284 ~~aGansi~~g~~~lt---------t~~~~~e~D~~~l~~lgl~~e~ 321 (335)
T COG0502 284 FMAGANSIFVGDKYLT---------TPGPDEDKDLELLKDLGLEPEL 321 (335)
T ss_pred HHhccceeeecceEee---------cCCCCchhHHHHHHHcCCCccc
Confidence 899999776666 333 3358889999999988876544
No 122
>PLN02428 lipoic acid synthase
Probab=96.78 E-value=0.096 Score=54.33 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
..+.++..++++.+.+.|++++-+.+.....+ |. .....++++.|++ .+.+++.+++|...
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~--------------- 192 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVPDFR--------------- 192 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCcccc---------------
Confidence 35677888999999999999988876532111 11 1122455566664 35677777777543
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc---CCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI---NCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCP 295 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~---~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p 295 (452)
+..+.++..+++|.+.+..-.-.++...+ +. +.+.++.+ ++++.||+. |+.+..+++.-+|
T Consensus 193 -------~d~elL~~L~eAG~d~i~hnlETv~rL~~-~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~MvGLG-- 258 (349)
T PLN02428 193 -------GDLGAVETVATSGLDVFAHNIETVERLQR-IVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIMLGLG-- 258 (349)
T ss_pred -------CCHHHHHHHHHcCCCEEccCccCcHHHHH-HhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEEecC--
Confidence 12357888899999998876655554333 33 34666666 455788888 9988878885432
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCFEISLG 323 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L~ 323 (452)
+ +.+.+.+.++.+.+.|+|.+.|.
T Consensus 259 -E---T~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 259 -E---TDEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred -C---CHHHHHHHHHHHHHcCCCEEeec
Confidence 2 57899999999999999998664
No 123
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.74 E-value=0.42 Score=48.22 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=94.6
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----Hhcc---CCce
Q 012949 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLE---GARL 197 (452)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~---~~~l 197 (452)
-.-|+.+|+ |-..--+..++.+..++-+..+.+.|.+.|++|.-++ |. .+.+ +.++.++++ +.+. +..+
T Consensus 17 imGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg-~~~v-~~eeE~~Rv~pvI~~l~~~~~~~I 93 (282)
T PRK11613 17 VMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPG-AAEV-SVEEELDRVIPVVEAIAQRFEVWI 93 (282)
T ss_pred EEEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHHHHHhcCCCeE
Confidence 345666665 4443334457899999999999999999999996543 32 2222 333433333 3322 2222
Q ss_pred eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949 198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA 277 (452)
Q Consensus 198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A 277 (452)
++ ... ..+-+++|+++|++.|.=..+.++ ++.+ +.+
T Consensus 94 SI--DT~------------------------~~~va~~AL~~GadiINDI~g~~d-----------~~~~-------~~~ 129 (282)
T PRK11613 94 SV--DTS------------------------KPEVIRESAKAGAHIINDIRSLSE-----------PGAL-------EAA 129 (282)
T ss_pred EE--ECC------------------------CHHHHHHHHHcCCCEEEECCCCCC-----------HHHH-------HHH
Confidence 21 111 124678899999998754433322 1112 334
Q ss_pred HhCCCcEEEEEEeeecCCCCCC--CC--------HHHHHHHHHHHHHCCcC--EEEEcCC-cCCC-cHHHHHHHHHHHHH
Q 012949 278 KVLSIPVRGYVSCVVGCPVEGA--IP--------PSKVAYVAKELHDMGCF--EISLGDT-IGVG-TPGTVVPMLEAVMA 343 (452)
Q Consensus 278 k~~G~~V~~~l~~~~g~p~~~r--~d--------~e~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~li~~l~~ 343 (452)
++.|..+. |+..-|.|.... .. .+++.+.++.+.++|++ .|.+ |. .|.. ++++-.++++.+..
T Consensus 130 a~~~~~vV--lmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~~ 206 (282)
T PRK11613 130 AETGLPVC--LMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLAE 206 (282)
T ss_pred HHcCCCEE--EEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHHH
Confidence 56677665 555444332211 11 14666777888999986 6665 54 3442 35566666666543
No 124
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.65 E-value=0.34 Score=48.93 Aligned_cols=220 Identities=14% Similarity=0.051 Sum_probs=128.8
Q ss_pred HHHHHHC---------CCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccc
Q 012949 154 IRRLVSS---------GLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 154 ~~~L~~~---------Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
++...++ |++.|=+++.. ....+|- +-+.++.++.++.+.. +.+++++..-. + . -+.
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~-------G-g-~~~ 92 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDT-------G-G-NFE 92 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCC-------C-C-CHH
Confidence 4555666 99999887542 1112232 2345777887776543 33443332111 1 0 111
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHH---hhh---cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFS---KSN---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~---~~~---~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
++ .+.++...++|+.-|.|-+...+-+. ..+ .=.+.++..++++.+++. +. +.++.+ +..+
T Consensus 93 ~v--------~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~-~~~~~I-iART-- 159 (285)
T TIGR02320 93 HF--------RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QT-TEDFMI-IARV-- 159 (285)
T ss_pred HH--------HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-cc-CCCeEE-EEec--
Confidence 11 23678888999999999776543211 111 114678888877554433 22 333321 1110
Q ss_pred CCCC--CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949 294 CPVE--GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 371 (452)
Q Consensus 294 ~p~~--~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a 371 (452)
|+ .....+...+-++...++|||.|.+. .+..+++++.++++.+...+|..|+-+.. ..++.- ..-.--++
T Consensus 160 --Da~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~l 232 (285)
T TIGR02320 160 --ESLILGKGMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDA 232 (285)
T ss_pred --ccccccCCHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHc
Confidence 11 11246778888999999999999997 34678999999999998877777774433 223332 23344468
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 372 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 372 Ga~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
|+++|-....-+ ++-..++++++..+...|.
T Consensus 233 G~~~v~~~~~~~--------~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 233 GISVVIYANHLL--------RAAYAAMQQVAERILEHGR 263 (285)
T ss_pred CCCEEEEhHHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 999976554433 4556777888777776543
No 125
>PTZ00413 lipoate synthase; Provisional
Probab=96.64 E-value=0.1 Score=54.63 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhcc
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
..++.++..++|+...+.|++++-+++..... +|. ..++.+.+.++.+ +++.+.+++|...
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D-~ga~~~a~~I~~Ir~~~p~~~IevligDf~------------- 239 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPD-GGASHVARCVELIKESNPELLLEALVGDFH------------- 239 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CCh-hhHHHHHHHHHHHHccCCCCeEEEcCCccc-------------
Confidence 35799999999999999999999998754321 110 1234444444433 5677777777542
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeec
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVG 293 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g 293 (452)
...+.++..+++|++.++--+-.++.+....- +-+.++.++. ++.||+. |+.+...++ +|
T Consensus 240 ---------g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~----Lr~AKe~f~~gi~tcSGiI--VG 304 (398)
T PTZ00413 240 ---------GDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKV----LEHVKEFTNGAMLTKSSIM--LG 304 (398)
T ss_pred ---------cCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHH----HHHHHHHhcCCceEeeeeE--ec
Confidence 12347889999999998877666665544332 2467777654 4677765 777765666 44
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGD 324 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D 324 (452)
.-+ +.+++.++++.+.+.|+|.+.|.-
T Consensus 305 -LGE---T~eEvie~m~dLrelGVDivtIGQ 331 (398)
T PTZ00413 305 -LGE---TEEEVRQTLRDLRTAGVSAVTLGQ 331 (398)
T ss_pred -CCC---CHHHHHHHHHHHHHcCCcEEeecc
Confidence 112 468899999999999999998843
No 126
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.63 E-value=0.11 Score=52.66 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=129.8
Q ss_pred HHHHHHCCCCEEEEec-CC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949 154 IRRLVSSGLPVVEATS-FV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~-~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~ 227 (452)
++.+.++|++.+=+++ .. +...+|- +-+.+++++.++++.+ +.+++++..- .||+..+. +.
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d-------tGyG~~~~-v~----- 95 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD-------AGYGNAMS-VW----- 95 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCCcHH-HH-----
Confidence 5677889999998743 22 1112232 2345778888877643 4555555322 35665543 22
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPS 303 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~---~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e 303 (452)
..+++..++|+.-|+|-+.+.+-+.- .+.=.+.++..++++.+.+..++-.+-+. ..+ |+ .....+
T Consensus 96 ---r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~---ART----Da~~~~g~d 165 (294)
T TIGR02319 96 ---RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTII---ART----DARESFGLD 165 (294)
T ss_pred ---HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEE---EEe----cccccCCHH
Confidence 26788899999999999886542111 11113788888888666544443222221 111 11 112456
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
...+=++...++|||.|.+. |.-+++++..+.+.+. .|. .+-+.......+= +.-..-++|+++|-.....+
T Consensus 166 eaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~ 237 (294)
T TIGR02319 166 EAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW 237 (294)
T ss_pred HHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH
Confidence 66667788889999999995 5778888777666542 232 1233333322222 23344467999998777766
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 384 GGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 384 GecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
++-..++.+.+..|+..|.
T Consensus 238 --------~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 238 --------MAAASVLRKLFTELREAGT 256 (294)
T ss_pred --------HHHHHHHHHHHHHHHHcCC
Confidence 4567888888888876553
No 127
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=96.61 E-value=0.15 Score=52.07 Aligned_cols=142 Identities=15% Similarity=0.055 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++..++++.+.+.|+..|-++.. .|-+ .|..++++.+++..+..-..++.|-. ++
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGG-----EPllr~dl~~li~~i~~~~~l~~i~itTNG~-ll-------------- 103 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGG-----EPLVRRGCDQLVARLGKLPGLEELSLTTNGS-RL-------------- 103 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECc-----CCCccccHHHHHHHHHhCCCCceEEEEeChh-HH--------------
Confidence 489999999999999999999988642 1333 24556666666554432223343321 01
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d 301 (452)
.+.++..+++|++.|.|.+-..+......++ ....++++.+.++.+++.|+ .|..+.... ...+
T Consensus 104 -------~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~--~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~------~g~N 168 (329)
T PRK13361 104 -------ARFAAELADAGLKRLNISLDTLRPELFAALT--RNGRLERVIAGIDAAKAAGFERIKLNAVIL------RGQN 168 (329)
T ss_pred -------HHHHHHHHHcCCCeEEEEeccCCHHHhhhhc--CCCCHHHHHHHHHHHHHcCCCceEEEEEEE------CCCC
Confidence 1256777889999999986443221111221 12356777788899999998 666443321 1235
Q ss_pred HHHHHHHHHHHHHCCcCEE
Q 012949 302 PSKVAYVAKELHDMGCFEI 320 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I 320 (452)
.+.+.++++.+.+.|++..
T Consensus 169 ~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 169 DDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred HHHHHHHHHHHHhcCCeEE
Confidence 6888999999999998743
No 128
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.61 E-value=0.24 Score=57.13 Aligned_cols=237 Identities=11% Similarity=0.051 Sum_probs=137.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHH---HHHHHh-ccCCceeEEecchhhhhhhhhhhhhc
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDV---MEAVRD-LEGARLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v---~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
...++.++.++.++...+.|+..|-+-+...|. .+.+.+ ++.+++ .+++.+-+++|.--.-+.+..++
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~-----~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl--- 625 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPE-----LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGL--- 625 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC-----cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCC---
Confidence 346999999999999999999999987655554 123344 444443 34566655554211000000111
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh---hhc---CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK---SNI---NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~---~~~---~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
...+.+++++++|++.+.- ..-+++.. ..+ .++.++ -.++++.|+++|+++...++
T Consensus 626 ----------~~~e~l~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~~~----wle~i~~Ah~lGi~~~stmm-- 687 (843)
T PRK09234 626 ----------SIREWLTALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPTAE----WIEVVTTAHEVGLRSSSTMM-- 687 (843)
T ss_pred ----------CHHHHHHHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCHHH----HHHHHHHHHHcCCCcccceE--
Confidence 1234678899999998752 11122111 111 223332 24778999999999987777
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCcC------EEE----EcCC--------cCCCcHHHHHHHHHHHHHhCCC-c-cEE
Q 012949 292 VGCPVEGAIPPSKVAYVAKELHDMGCF------EIS----LGDT--------IGVGTPGTVVPMLEAVMAVVPV-E-KLA 351 (452)
Q Consensus 292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad------~I~----L~DT--------~G~~~P~~v~~li~~l~~~~p~-~-~l~ 351 (452)
||-. -++++.++.+..+.+.+.+ -|- -.+| ....+|.+...+++..|=.+|+ + +|.
T Consensus 688 ~G~~----Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iq 763 (843)
T PRK09234 688 YGHV----DTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQ 763 (843)
T ss_pred EcCC----CCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCccccc
Confidence 4422 2577888888888877643 111 2232 1236778888888777766663 1 232
Q ss_pred EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 411 (452)
Q Consensus 352 vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~ 411 (452)
.-. .++|. .-+..++.+||+-+.+|+..====+.|....| ..+.+++..+.+..|..
T Consensus 764 a~w-v~lg~--~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 764 TSW-VKLGV--EGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred chh-hhcCH--HHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 222 34443 34678999999988877642100011111223 35678888888876653
No 129
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.56 E-value=0.11 Score=51.35 Aligned_cols=144 Identities=14% Similarity=0.069 Sum_probs=76.5
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.|.+.|++.|.++.. +...........+...+.+.+++++|++.|+.+. +... ..+ ...+++.+.++++
T Consensus 98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~--lE~~-~~~--~~~t~~~~~~li~ 170 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLA--VEIM-DTP--FMSSISKWLKWDH 170 (279)
T ss_pred HHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeC-CCc--hhcCHHHHHHHHH
Confidence 4678888899998876531 1100000011245667778889999999998765 3321 111 1224444444443
Q ss_pred HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949 311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 389 (452)
Q Consensus 311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a 389 (452)
+.+-+.+.+ -|+.-...-. .+..+.++. ..+--..+|.+|..+ |. .+. ..+
T Consensus 171 ---~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~------------~~--~~~--~p~------ 222 (279)
T TIGR00542 171 ---YLNSPWFTLYPDIGNLSAWD--NDVQMELQL-GIDKIVAIHLKDTKP------------GQ--FKD--VPF------ 222 (279)
T ss_pred ---HcCCCceEEEeCcChhhhcc--CCHHHHHHH-hhhhEEEEEeCCCCC------------Cc--cCC--cCC------
Confidence 334343333 4664221100 112222322 223347899999754 11 111 122
Q ss_pred CCCCCcccHHHHHHHHHcCCCC
Q 012949 390 KGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 390 ~graGNaalE~vv~~L~~~Gi~ 411 (452)
+.|..+...++.+|+..|++
T Consensus 223 --G~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 223 --GEGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred --CCCccCHHHHHHHHHHhCCc
Confidence 25789999999999987765
No 130
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.55 E-value=0.12 Score=52.42 Aligned_cols=218 Identities=17% Similarity=0.103 Sum_probs=128.6
Q ss_pred HHHHHHCCCCEEEEecC-C--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949 154 IRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~ 227 (452)
++...++|++.|=++++ + +...+|- +-+.+++++.++++.+ +.+++++..- .||+ .+.++.+
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d-------~GyG-~~~~v~r---- 97 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID-------TGFG-GAFNIAR---- 97 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCC-CHHHHHH----
Confidence 56677889999988754 1 2222332 2356788888887644 3455555322 3566 3444433
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPS 303 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~---~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e 303 (452)
.+++..++|+.-|+|-+.+.+-+.-+.-+ .+.++..++++.+.+..+ +.+... +..+ |+ .....+
T Consensus 98 ----~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~I-iART----Da~~~~g~d 166 (292)
T PRK11320 98 ----TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVI-MART----DALAVEGLD 166 (292)
T ss_pred ----HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEE-EEec----CcccccCHH
Confidence 78888999999999998775422211112 378888888865544433 333221 1111 11 112356
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
...+=++...++|||.|.+. |.-++++++++.+.+. .|. .+-+-.....++= +.-.--++|+++|-.....+
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~~--~Pl-~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPE---AMTELEMYRRFADAVK--VPI-LANITEFGATPLF--TTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred HHHHHHHHHHHcCCCEEEec---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH
Confidence 66666888889999999995 4667888877776552 232 1122221111111 22233467999987776655
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 384 GGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 384 GecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
++-..++++++..++..|.
T Consensus 239 --------~aa~~a~~~~~~~l~~~g~ 257 (292)
T PRK11320 239 --------RAMNKAAENVYEAIRRDGT 257 (292)
T ss_pred --------HHHHHHHHHHHHHHHHcCC
Confidence 4567778888887776554
No 131
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.55 E-value=0.3 Score=48.45 Aligned_cols=184 Identities=11% Similarity=0.032 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
=+.++..++++.+.++|+..+--|+|- ||.-.-.+ . ++-++.+++. ....+.+++--.
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G-~~gl~~L~~~~~~~Gl~~~Tev~---------------- 87 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-G-LQGIRYLHEVCQEFGLLSVSEIM---------------- 87 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-C-HHHHHHHHHHHHHcCCCEEEeeC----------------
Confidence 467899999999999999999999863 34311111 1 2233333322 122333333111
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
..++++.+.+ .+|.+.|....- .+ .++++++.+.|.+|. |+. ....
T Consensus 88 --------d~~~v~~~~e-~vdilqIgs~~~----------------~n-~~LL~~va~tgkPVi--lk~------G~~~ 133 (250)
T PRK13397 88 --------SERQLEEAYD-YLDVIQVGARNM----------------QN-FEFLKTLSHIDKPIL--FKR------GLMA 133 (250)
T ss_pred --------CHHHHHHHHh-cCCEEEECcccc----------------cC-HHHHHHHHccCCeEE--EeC------CCCC
Confidence 1247777777 689888764321 11 245566667788875 442 1146
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHH-HH--HHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHHHHcC
Q 012949 301 PPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGT-VV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~-v~--~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaAl~aG 372 (452)
+++.+...++.+.+.|...|.|+- +.++-+|.+ +. .-+..+++.+. .||.+ |.=..+-+..+-+++|+.+|
T Consensus 134 t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~G 212 (250)
T PRK13397 134 TIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVG 212 (250)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhC
Confidence 789999999999999998888886 445544433 22 23566666553 34333 44333445568899999999
Q ss_pred CC--EEeeccc
Q 012949 373 IS--TVDCSVA 381 (452)
Q Consensus 373 a~--~VD~Sv~ 381 (452)
|+ .|+.-..
T Consensus 213 AdGl~IE~H~~ 223 (250)
T PRK13397 213 ANGIMMEVHPD 223 (250)
T ss_pred CCEEEEEecCC
Confidence 99 8887665
No 132
>PRK12928 lipoyl synthase; Provisional
Probab=96.53 E-value=0.098 Score=52.90 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.++.+++++.+.+.|+++|-+++..... .|.. ....++++.|++. +.+++-+++|.... .
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dD-l~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~---------~---- 151 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDD-LPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWG---------G---- 151 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCc-ccccCHHHHHHHHHHHHhcCCCCEEEEecccccc---------C----
Confidence 5899999999999999999998887643211 1111 1235666777664 55677677664320 0
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeeecCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVE 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~g~p~~ 297 (452)
..+.++..+++|.+.+...+..+|...+ -+-+.+.++.+ ++++.|++.| +.+...++. |. -+
T Consensus 152 --------~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~l----e~l~~ak~~gp~i~~~s~iIv--G~-GE 216 (290)
T PRK12928 152 --------QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSL----DLLARAKELAPDIPTKSGLML--GL-GE 216 (290)
T ss_pred --------CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHH----HHHHHHHHhCCCceecccEEE--eC-CC
Confidence 1236778888998877766555553332 22344555544 6668999999 888777774 42 22
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcC----------CcCCCcHHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGD----------TIGVGTPGTVVPM 337 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D----------T~G~~~P~~v~~l 337 (452)
+.+.+.+.++.+.+.+++.+.+.= -..+.+|++...+
T Consensus 217 ---T~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 217 ---TEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 468888999999999999888722 2345566666554
No 133
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.46 E-value=0.42 Score=45.96 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccC-CceeEEecchhhhhhhhhhhhhccchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEG-ARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.+.++-.++++.|.+.|++.||+++-. + +..+.++.+++ .++ +.+.+-+=
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~-~-------~~~~~i~~l~~~~~~~~~iGaGTV-------------------- 70 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNS-P-------DPFDSIAALVKALGDRALIGAGTV-------------------- 70 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC-c-------cHHHHHHHHHHHcCCCcEEeEEec--------------------
Confidence 488999999999999999999998632 2 33444555543 332 23322110
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
...++++.|+++|++.++... .+ .++++++++.|..+. .| -.++
T Consensus 71 -----~~~~~~~~a~~aGA~fivsp~--~~------------------~~v~~~~~~~~~~~~------~G-----~~t~ 114 (206)
T PRK09140 71 -----LSPEQVDRLADAGGRLIVTPN--TD------------------PEVIRRAVALGMVVM------PG-----VATP 114 (206)
T ss_pred -----CCHHHHHHHHHcCCCEEECCC--CC------------------HHHHHHHHHCCCcEE------cc-----cCCH
Confidence 123589999999999888632 22 256678888888764 22 2345
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+.+ ..+.++|+|.|.+=-+ +...|+. ++.+++.+| .+++-.= =|.-..|.-.-+++|++.|=
T Consensus 115 ~E~----~~A~~~Gad~vk~Fpa-~~~G~~~----l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 115 TEA----FAALRAGAQALKLFPA-SQLGPAG----IKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred HHH----HHHHHcCCCEEEECCC-CCCCHHH----HHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEE
Confidence 443 4456789999886222 2233554 444555554 3444332 37778999999999999764
No 134
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.46 E-value=0.77 Score=43.17 Aligned_cols=157 Identities=24% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-.++++.|.+.|++.||+.+-. + +..+.++.+++ .+++.+.+-. ..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~-~-------~~~~~i~~l~~~~~~~~iGag~-v~------------------- 64 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRT-P-------GALEAIRALRKEFPEALIGAGT-VL------------------- 64 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCEEEEEe-CC-------------------
Confidence 367888999999999999999998632 1 12334455543 2333333211 00
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
+.+.++.++++|.+.|+... ++ .++++++++.|..+. .| ..+++
T Consensus 65 -----~~~~~~~a~~~Ga~~i~~p~--~~------------------~~~~~~~~~~~~~~i------~g-----v~t~~ 108 (190)
T cd00452 65 -----TPEQADAAIAAGAQFIVSPG--LD------------------PEVVKAANRAGIPLL------PG-----VATPT 108 (190)
T ss_pred -----CHHHHHHHHHcCCCEEEcCC--CC------------------HHHHHHHHHcCCcEE------CC-----cCCHH
Confidence 12488999999999997432 22 256788888887764 12 22454
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.+ ..+.++|+|.|.+ +... |. -.++++.+++.+|..++..= =|.-..|....+++||+.|-+
T Consensus 109 e~----~~A~~~Gad~i~~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 109 EI----MQALELGADIVKL-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGVVAVGG 170 (190)
T ss_pred HH----HHHHHCCCCEEEE-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCCEEEEE
Confidence 43 3445789999998 4432 22 45567777777765555443 355568999999999886643
No 135
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=96.44 E-value=0.72 Score=44.82 Aligned_cols=210 Identities=15% Similarity=0.090 Sum_probs=107.4
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhh--hhhh-hhhhhccchhhhhhh
Q 012949 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVI--LQRS-ILFQQCHASVISSNL 226 (452)
Q Consensus 150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~--i~r~-~~~~~~~~~~i~~~~ 226 (452)
-.+.++.+.++|++.||+..+.. .+.+++.+.++. .+++++++....... .+|. ..+........+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFRE--- 84 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHH---
Confidence 34566677799999999965321 244555555543 466666553111000 0000 000000000011
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCCCCC
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGAI 300 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~~r~ 300 (452)
...+.++.|.+.|++.|++..+... .+.+ .+...+.+.+++++|++.|+.+. +... +.+|...-.
T Consensus 85 -~~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~--lE~~~~~~~~~~~l~ 155 (254)
T TIGR03234 85 -GVALAIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLL--IEPINSFDMPGFFLT 155 (254)
T ss_pred -HHHHHHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE--EEECCcccCCCChhc
Confidence 1124677888899999987654211 1112 23455667888899999998765 3321 101111123
Q ss_pred CHHHHHHHHHHHHHCCcCEE-EEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 301 PPSKVAYVAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
+++...++++.+ +.+.+ ..-|+.=...- +...++++.+ .+--..+|..|+.|.
T Consensus 156 t~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~----~~~i~~vHi~D~~~~------------------ 210 (254)
T TIGR03234 156 TTEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAY----AAHIGHVQIADNPGR------------------ 210 (254)
T ss_pred CHHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHh----hccEeEEEeCCCCCC------------------
Confidence 555666665544 43333 23365422211 1223333333 332367888875320
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949 379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV 414 (452)
Q Consensus 379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i 414 (452)
.- + +.|..+..+++..|+..|++--+
T Consensus 211 --~~-------~-G~G~id~~~il~~L~~~gy~g~~ 236 (254)
T TIGR03234 211 --HE-------P-GTGEINYRFLFAVLDRLGYDGWV 236 (254)
T ss_pred --CC-------C-CCCccCHHHHHHHHHHCCCCceE
Confidence 01 2 25889999999999988876433
No 136
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.42 E-value=0.27 Score=48.34 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=79.2
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+-++.|...|++.|++... +.+.........+...+.+.++.++|++.|+.+. +... +...-.+++.+..+++
T Consensus 98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~---~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA--VEIM---DTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE--EEec---CccccCCHHHHHHHHH
Confidence 4677788899999987421 1000000112346677788889999999998754 3321 1111234555665655
Q ss_pred HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949 311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 389 (452)
Q Consensus 311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a 389 (452)
.+ +-+.+.++ |+. .+.=. =.+....++. ..+--..+|.+|..+.-.. ..|.. . -..+
T Consensus 171 ~v---~~~~~~~~~D~~-h~~~~-~~~~~~~l~~-~~~~i~~vHikD~~~~~~~------~~g~~--~--~~p~------ 228 (284)
T PRK13210 171 EI---DSPWLTVYPDVG-NLSAW-GNDVWSELKL-GIDHIAAIHLKDTYAVTET------SKGQF--R--DVPF------ 228 (284)
T ss_pred Hc---CCCceeEEecCC-hhhhc-CCCHHHHHHH-hcCeEEEEEeccccccccC------CCCcc--c--cccC------
Confidence 44 44444443 652 11100 0112223322 3333478999997542100 00110 0 0112
Q ss_pred CCCCCcccHHHHHHHHHcCCCC
Q 012949 390 KGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 390 ~graGNaalE~vv~~L~~~Gi~ 411 (452)
+.|+++..+++.+|+..|++
T Consensus 229 --G~G~id~~~~~~~L~~~gy~ 248 (284)
T PRK13210 229 --GEGCVDFVGIFKTLKELNYR 248 (284)
T ss_pred --CCcccCHHHHHHHHHHcCCC
Confidence 25889999999999987655
No 137
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.041 Score=57.03 Aligned_cols=101 Identities=22% Similarity=0.181 Sum_probs=72.8
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+++..|++.|+|.|.+-.+ ++-.+.. .+.|.++ +.+.|++|+++|.++.+.+.... .....+.+.+..
T Consensus 17 ~~l~~ai~~GADaVY~G~~--~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~~l 85 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK--EFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETLERYL 85 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc--ccccccccccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHHHH
Confidence 5889999999998877644 2222221 3556655 67899999999998876555321 222345678899
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v 352 (452)
+.+.++|+|.|.++|. -+|..+++..|+.+|.+
T Consensus 86 ~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 86 DRLVELGVDAVIVADP----------GLIMLARERGPDLPIHV 118 (347)
T ss_pred HHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEE
Confidence 9999999999999994 36777888888765544
No 138
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.29 Score=46.70 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=111.8
Q ss_pred HHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCc--e--eEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 153 LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--L--PVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 153 i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~--l--~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
=++.|.++|.+.+-+-..- -.|+|.+.=-.-+.+.+|+..+.. + -.++-+-.
T Consensus 22 e~~~~l~~GadwlHlDVMD-g~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Pe----------------------- 77 (224)
T KOG3111|consen 22 ECKKMLDAGADWLHLDVMD-GHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPE----------------------- 77 (224)
T ss_pred HHHHHHHcCCCeEEEeeec-ccccCCcccchHHHHHHHhccCCCcceeEEEeecCHH-----------------------
Confidence 3567788999988774211 013344432234677787643321 1 11222211
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
+-++..+.+|++.+.+-.-+ .+...++++++|+.|+++...|- | -++.+.+..+
T Consensus 78 --q~V~~~a~agas~~tfH~E~----------------~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~ 131 (224)
T KOG3111|consen 78 --QWVDQMAKAGASLFTFHYEA----------------TQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPL 131 (224)
T ss_pred --HHHHHHHhcCcceEEEEEee----------------ccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHh
Confidence 24567788999987776532 23456889999999999875443 2 2456666666
Q ss_pred HHHHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949 309 AKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
+.. +|.+-+ =|+ |.---+++-.-|+.||+++|...+++ |-|++..|+-.+.+|||+.+=+.-+=+
T Consensus 132 ~~~-----~D~vLv-MtVePGFGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 132 AEH-----VDMVLV-MTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred hcc-----ccEEEE-EEecCCCchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEecceee
Confidence 652 232211 121 22223455666889999999876766 779999999999999999663322222
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHc
Q 012949 384 GGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 384 GecP~a~graGNaalE~vv~~L~~ 407 (452)
|-.+-.+++..|+.
T Consensus 202 ----------~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 202 ----------GAADPSDVISLLRN 215 (224)
T ss_pred ----------cCCCHHHHHHHHHH
Confidence 23566777776663
No 139
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.27 Score=49.47 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=145.9
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS 211 (452)
Q Consensus 135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~ 211 (452)
+++.+..+. ....+....+++...+.+-+.|--.+...-++... ...+...++.+ ....+++.... .
T Consensus 14 ke~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg---~~~~~~~v~~~a~~~~vPV~lHl-D------ 83 (286)
T COG0191 14 KENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGG---ADSLAHMVKALAEKYGVPVALHL-D------ 83 (286)
T ss_pred HHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhch---HHHHHHHHHHHHHHCCCCEEEEC-C------
Confidence 344455443 37889999999999999999998877654332221 22334444432 22223332211 0
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
.+ ...+++..++++|..-|.+=-|.- +.||.+...++++++|+..|+.|.+.|-..
T Consensus 84 ----Hg----------~~~~~~~~ai~~GFsSvMiDgS~~----------~~eENi~~tkevv~~ah~~gvsVEaElG~~ 139 (286)
T COG0191 84 ----HG----------ASFEDCKQAIRAGFSSVMIDGSHL----------PFEENIAITKEVVEFAHAYGVSVEAELGTL 139 (286)
T ss_pred ----CC----------CCHHHHHHHHhcCCceEEecCCcC----------CHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 11 023588899999999888754433 368899999999999999999999988886
Q ss_pred ecCCCC--CCCCHHHHH---HHHHHHHHCCcCE--EEEcCCcCCCcH---HHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949 292 VGCPVE--GAIPPSKVA---YVAKELHDMGCFE--ISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 361 (452)
Q Consensus 292 ~g~p~~--~r~d~e~l~---~~a~~l~~~Gad~--I~L~DT~G~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA 361 (452)
-|-+|. ...+++.+. +..+....-|+|. +.|.-.=|.-.| .-=.++++.+++..+ +||.+|.=. |..
T Consensus 140 GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip 216 (286)
T COG0191 140 GGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIP 216 (286)
T ss_pred cCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCC
Confidence 666662 223333332 2222333446774 445555555443 222456777777666 577777655 999
Q ss_pred HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHH
Q 012949 362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML 421 (452)
Q Consensus 362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~ 421 (452)
......|+..|+.-|+..-- .=.+.+..+-.++... ...+|..+++.
T Consensus 217 ~~eI~~aI~~GV~KvNi~Td-----------~~~A~~~avr~~~~~~--~k~~DpR~~l~ 263 (286)
T COG0191 217 DEEIREAIKLGVAKVNIDTD-----------LQLAFTAAVREYLAEN--PKEYDPRKYLK 263 (286)
T ss_pred HHHHHHHHHhCceEEeeCcH-----------HHHHHHHHHHHHHHhC--cccCCHHHHHH
Confidence 99999999999986654211 1134444444444432 13577776664
No 140
>PRK13753 dihydropteroate synthase; Provisional
Probab=96.40 E-value=0.69 Score=46.64 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=107.5
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHH----HHHhcc--CCceeEEe
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVME----AVRDLE--GARLPVLT 201 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~----~i~~~~--~~~l~~l~ 201 (452)
|+.+|+ |-..--+..++.+..++-++.+.+.|.+.|++|.-++ |..-| -+.++.++ .++.+. +..+++
T Consensus 7 IlNvTP-DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~--vs~eeE~~Rv~pvI~~l~~~~~~ISI-- 81 (279)
T PRK13753 7 ILNLTE-DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP--VSPADEIRRIAPLLDALSDQMHRVSI-- 81 (279)
T ss_pred EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc--CCHHHHHHHHHHHHHHHHhCCCcEEE--
Confidence 444444 3333333457889999999999999999999997654 43111 13333343 333332 222221
Q ss_pred cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949 202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS 281 (452)
Q Consensus 202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G 281 (452)
... ..+-+++|+++|++.|.=....++ + ++.+.+.+.+
T Consensus 82 DT~------------------------~~~va~~al~aGadiINDVsg~~d---------------~---~~~~vva~~~ 119 (279)
T PRK13753 82 DSF------------------------QPETQRYALKRGVGYLNDIQGFPD---------------P---ALYPDIAEAD 119 (279)
T ss_pred ECC------------------------CHHHHHHHHHcCCCEEEeCCCCCc---------------h---HHHHHHHHcC
Confidence 111 124678899999997664433222 1 2233444567
Q ss_pred CcEEEEEEeeecCC----CCCCCCH--------HHHHHHHHHHHHCCc--CEEEEcCCcCCC---cHHHHHHHHHHHHHh
Q 012949 282 IPVRGYVSCVVGCP----VEGAIPP--------SKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAV 344 (452)
Q Consensus 282 ~~V~~~l~~~~g~p----~~~r~d~--------e~l~~~a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~li~~l~~~ 344 (452)
..+. |++.-|.+ .....+. +++.+-++.+.++|+ +.|.|==-.|.. ++++-.++++.+.+-
T Consensus 120 ~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l 197 (279)
T PRK13753 120 CRLV--VMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKL 197 (279)
T ss_pred CCEE--EEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHH
Confidence 6654 66653311 1111111 244445667888998 578885567753 677877887775432
Q ss_pred -----CCCc-----------cEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 345 -----VPVE-----------KLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 345 -----~p~~-----------~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
+|.. .++...++-..-.+|.+..|+..||++|
T Consensus 198 ~~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~T~a~~~~a~~~Ga~iv 245 (279)
T PRK13753 198 KSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYV 245 (279)
T ss_pred HHhCCCceEEEccHhHHHHHHcCCChhhhhHhHHHHHHHHHHcCCCEE
Confidence 2420 0111222222223455566677788765
No 141
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.40 E-value=0.061 Score=51.45 Aligned_cols=153 Identities=23% Similarity=0.268 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-+++++.|.+.|++.||+++-. | ++.+.++.++ +.+++.+.+-+ .
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGT--V------------------- 67 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGT--V------------------- 67 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES----------------------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEe--c-------------------
Confidence 467888999999999999999999743 2 3455666555 34555444322 0
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.+.++++.|+++|++.+.-. .-+ .+++++|+++|+.+..-+ .+|.
T Consensus 68 ----~~~e~a~~a~~aGA~FivSP--~~~------------------~~v~~~~~~~~i~~iPG~-----------~Tpt 112 (196)
T PF01081_consen 68 ----LTAEQAEAAIAAGAQFIVSP--GFD------------------PEVIEYAREYGIPYIPGV-----------MTPT 112 (196)
T ss_dssp -----SHHHHHHHHHHT-SEEEES--S--------------------HHHHHHHHHHTSEEEEEE-----------SSHH
T ss_pred ----cCHHHHHHHHHcCCCEEECC--CCC------------------HHHHHHHHHcCCcccCCc-----------CCHH
Confidence 12358999999999976522 111 377899999999875322 3454
Q ss_pred HHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949 304 KVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST 375 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~ 375 (452)
++. .+.++|++.+-+ ++..|- ..+++.++.-+|++++- -+=|.-..|.-.-+.+|+..
T Consensus 113 Ei~----~A~~~G~~~vK~FPA~~~GG------~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~ 172 (196)
T PF01081_consen 113 EIM----QALEAGADIVKLFPAGALGG------PSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVA 172 (196)
T ss_dssp HHH----HHHHTT-SEEEETTTTTTTH------HHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBS
T ss_pred HHH----HHHHCCCCEEEEecchhcCc------HHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEE
Confidence 443 356799998887 233331 46788888878875543 34456667888889999763
No 142
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.39 E-value=0.36 Score=48.15 Aligned_cols=182 Identities=13% Similarity=0.201 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
-+.+..++.++.+.+.|.+.|++|..+.+. .+.+.+...++.+ .+..++.=+++
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~------------------ 78 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPN------------------ 78 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCC------------------
Confidence 367788889999999999999999764432 1123333444433 23333221221
Q ss_pred hhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
.+-+++|++. |.+.|.=..... ++..++++.+++.|..+.+-.+..-|-|....
T Consensus 79 --------~~v~eaaL~~~~G~~iINsIs~~~----------------~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~ 134 (261)
T PRK07535 79 --------PAAIEAGLKVAKGPPLINSVSAEG----------------EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAE 134 (261)
T ss_pred --------HHHHHHHHHhCCCCCEEEeCCCCC----------------ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHH
Confidence 2366788887 877554222111 11234556778888877532221112111000
Q ss_pred CCHHHHHHHHHHHHHCCc--CEEEEcCC-cCC--CcHH---HHHHHHHHHHHhCCCccEEEEeCC-CcCcHHH---H---
Q 012949 300 IPPSKVAYVAKELHDMGC--FEISLGDT-IGV--GTPG---TVVPMLEAVMAVVPVEKLAVHLHD-TYGQSLP---N--- 364 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Ga--d~I~L~DT-~G~--~~P~---~v~~li~~l~~~~p~~~l~vH~Hn-d~GlA~A---N--- 364 (452)
-..+++.+..+.+.++|+ +.|.+ |. +|. ..+. ++-+.++.+++.+|+.++-+=.+| .+|++-- |
T Consensus 135 ~~~~~l~~~v~~a~~~GI~~~~Iil-DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~f 213 (261)
T PRK07535 135 DRLAVAKELVEKADEYGIPPEDIYI-DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAF 213 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCHhHEEE-eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHH
Confidence 013566677788889998 47766 54 331 1233 345566777777777677776666 4777422 1
Q ss_pred HHHHHHcCCC
Q 012949 365 ILISLQMGIS 374 (452)
Q Consensus 365 aLaAl~aGa~ 374 (452)
...|+++|.+
T Consensus 214 l~~a~~~Gl~ 223 (261)
T PRK07535 214 LVMAMGAGMD 223 (261)
T ss_pred HHHHHHcCCC
Confidence 2245566644
No 143
>PRK12677 xylose isomerase; Provisional
Probab=96.36 E-value=0.25 Score=51.91 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh---ccCCceeEEecchh--hhhhhhhhhhhccch
Q 012949 147 TGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLK--VILQRSILFQQCHAS 220 (452)
Q Consensus 147 ~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~---~~~~~l~~l~~~~~--~~i~r~~~~~~~~~~ 220 (452)
.-.-.+.++.+.++|++.||+.... .|-..+. ...+..++.+++ -.++++.+++++.- ...+ --++......
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~-~g~lts~d~~ 107 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATD-AERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK-DGAFTSNDRD 107 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecccccCCCCCCh-hhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc-CCcCCCCCHH
Confidence 3345678899999999999996321 1110110 000112333332 24677777766531 0000 0011111221
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHH----HHHHHHHHHhCCCcEEEEEEe
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR----YRAVAHAAKVLSIPVRGYVSC 290 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~----~~~~v~~Ak~~G~~V~~~l~~ 290 (452)
+-+.......+.++.|.+.|++.|.++..--.. ......+.+++++. +.++.++|++.|..|+..|..
T Consensus 108 ~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 108 VRRYALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 112112223467889999999999998552110 00112344555544 446778898877666655664
No 144
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.35 E-value=0.8 Score=44.60 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEEe-cchhhhhhhhhhhhhccchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVLT-PNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i 222 (452)
.+...-.+-++.|.+.|++.+=+-..- -.++|.+.-..+.++.+++.. +..+-+-. +..
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimD-g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~------------------ 76 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMD-GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSN------------------ 76 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCC------------------
Confidence 444566677888899999977663211 123455543345677776543 44333311 111
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
....++.+.++|++.|.+-..+.+ ..+.++++.+|+.|..+.+.+. ..++.
T Consensus 77 ------p~~~i~~~~~~Gad~itvH~ea~~---------------~~~~~~l~~ik~~G~~~gval~--------p~t~~ 127 (228)
T PTZ00170 77 ------PEKWVDDFAKAGASQFTFHIEATE---------------DDPKAVARKIREAGMKVGVAIK--------PKTPV 127 (228)
T ss_pred ------HHHHHHHHHHcCCCEEEEeccCCc---------------hHHHHHHHHHHHCCCeEEEEEC--------CCCCH
Confidence 013678889999999888654332 2245778899999988764443 12356
Q ss_pred HHHHHHHHHHHHCCcCEE----EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 303 SKVAYVAKELHDMGCFEI----SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I----~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
+.+.++++. ..+|.| .-+...|...-....+.++.+++..+...|.+ |-|.-..|.-.+.++||+.+
T Consensus 128 e~l~~~l~~---~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 128 EVLFPLIDT---DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred HHHHHHHcc---chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 666555410 011211 01223344444455556777888766534444 67888889999999999976
No 145
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.34 E-value=0.19 Score=49.62 Aligned_cols=144 Identities=15% Similarity=0.026 Sum_probs=77.5
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.|.+.|++.|.+....... ........+...+.+.++.++|++.|+.+. +... +.....+++...++++
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHHHHHHHH
Confidence 46788889999988764211000 000011233446677888999999998764 3321 1122235566665655
Q ss_pred HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949 311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 389 (452)
Q Consensus 311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a 389 (452)
.+ +-+.+.+ -|+.=...-. .+....++. +.+--..+|.+|..+- +-+. ..+|
T Consensus 176 ~v---~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~~-----------~~~~-----~~~G----- 228 (283)
T PRK13209 176 YL---NSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTKPG-----------VFKN-----VPFG----- 228 (283)
T ss_pred Hh---CCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCCCC-----------CCce-----eCCC-----
Confidence 43 4444433 2653211100 012223332 3333478999997531 0111 1233
Q ss_pred CCCCCcccHHHHHHHHHcCCCC
Q 012949 390 KGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 390 ~graGNaalE~vv~~L~~~Gi~ 411 (452)
.|..+.+.++..|+..|++
T Consensus 229 ---~G~id~~~i~~~L~~~gy~ 247 (283)
T PRK13209 229 ---EGVVDFERCFKTLKQSGYC 247 (283)
T ss_pred ---CCccCHHHHHHHHHHcCCC
Confidence 4789999999999987664
No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=96.34 E-value=1.1 Score=43.78 Aligned_cols=208 Identities=11% Similarity=0.060 Sum_probs=106.4
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhh-hhhhhhhhhccchhhhhhhh
Q 012949 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVI-LQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~-i~r~~~~~~~~~~~i~~~~~ 227 (452)
-.+.++.+.+.|++.||+..+. -.+.+++.+.++. .+++++... |..... -.|.+.+.+... ...+.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 85 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGRE---EEFRD 85 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcH---HHHHH
Confidence 3556888999999999996421 1356677777654 355554321 111000 000000000000 00001
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEEe--eecCCCCCCCC
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSC--VVGCPVEGAIP 301 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~--~~g~p~~~r~d 301 (452)
...+-++.|.+.|++.|.++..... .+.+. +...+.+.++.++|++.|+.+. +.. .+..+...-.+
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~n~~~~~~~~~~~ 157 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLL--IEPINHFDIPGFHLTG 157 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCCCcCCCCCccCC
Confidence 1234667788899999988653211 11222 3445666778889999998754 321 01011111234
Q ss_pred HHHHHHHHHHHHHCCcCEEE-EcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 302 PSKVAYVAKELHDMGCFEIS-LGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~-L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
++...++++.+ +.+.|. .-|+.=.... ..+.+.++. +++-...+|.+|..+-
T Consensus 158 ~~~~~~ll~~v---~~~~v~l~~D~~h~~~~g~~~~~~~~~----~~~ri~~vHikD~~~~------------------- 211 (258)
T PRK09997 158 TRQALKLIDDV---GCCNLKIQYDIYHMQRMEGELTNTMTQ----WADKIGHLQIADNPHR------------------- 211 (258)
T ss_pred HHHHHHHHHHh---CCCCEEEEeEHHHhhhcCCcHHHHHHH----hhCcccEEEeCCCCCC-------------------
Confidence 55555555443 444332 3365322211 122333333 3333357899985320
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 380 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 380 v~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
.-+| .|..+...++..|+..|++
T Consensus 212 -~~~G--------~G~id~~~i~~aL~~~Gy~ 234 (258)
T PRK09997 212 -GEPG--------TGEINYDYLFKVIENSDYN 234 (258)
T ss_pred -CCCC--------CCcCCHHHHHHHHHHhCCC
Confidence 0122 5889999999999998775
No 147
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.27 E-value=0.33 Score=46.62 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=109.2
Q ss_pred hhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCce
Q 012949 118 KFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL 197 (452)
Q Consensus 118 ~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l 197 (452)
|+|..+|+-+.+.-.|+ -|.-. -+.++..++++.+.+.|+..++++.+ +.++.+++..+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~--i 61 (219)
T cd04729 2 KLLEQLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVD--L 61 (219)
T ss_pred cHHHHhcCCeEEEccCC-CCCCc----CcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCC--C
Confidence 45666788788887766 33221 35678899999999999999997431 23455554323 2
Q ss_pred eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949 198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA 277 (452)
Q Consensus 198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A 277 (452)
+++.+..+ .|... .-.++ .+.+.++.++++|++.|-+-.+.... .+ -+.+.++++.+
T Consensus 62 Pil~~~~~-------~~~~~-~~~ig----~~~~~~~~a~~aGad~I~~~~~~~~~---------p~--~~~~~~~i~~~ 118 (219)
T cd04729 62 PIIGLIKR-------DYPDS-EVYIT----PTIEEVDALAAAGADIIALDATDRPR---------PD--GETLAELIKRI 118 (219)
T ss_pred CEEEEEec-------CCCCC-CceeC----CCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CcCHHHHHHHH
Confidence 33221111 00000 00000 01247899999999966654332110 00 01345677888
Q ss_pred HhCC-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEE
Q 012949 278 KVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 278 k~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~v 352 (452)
++.| +.+.+ . -.+++. ++.+.++|++.|.+. +..+.. ......++++.+++.+. +++-.
T Consensus 119 ~~~g~~~iiv--~---------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia 182 (219)
T cd04729 119 HEEYNCLLMA--D---------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA 182 (219)
T ss_pred HHHhCCeEEE--E---------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE
Confidence 8888 54431 1 123443 366777899988542 221211 11123467788887663 34443
Q ss_pred EeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949 353 HLHDTYGQS-LPNILISLQMGISTV 376 (452)
Q Consensus 353 H~Hnd~GlA-~ANaLaAl~aGa~~V 376 (452)
..|.. ..+...++++||+.|
T Consensus 183 ----~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 183 ----EGRINSPEQAAKALELGADAV 203 (219)
T ss_pred ----eCCCCCHHHHHHHHHCCCCEE
Confidence 55663 578888899998854
No 148
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.22 E-value=0.2 Score=49.82 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
..+.++..++++...+.|++.+-+.. .+++. ..+.+. .++.+.+-+-. ..+|.+.... +
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~------~~~~~~--~~~~l~~~i~~-------~~~~~~~~~~--~ 93 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMHK----GLARH------GHRGYG--RDVGLIVHLSA-------STSLSPDPND--K 93 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhh------hccccC--CCCcEEEEEcC-------CCCCCCCCCc--c
Confidence 34677888899999999999998852 11111 001110 12221110000 0112111110 0
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.....++.|++.|++.|.+....... ..++.++.+.++.+.+++.|+++.+ +.+..|...++..+++
T Consensus 94 ----~~~~~ve~A~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~v-i~~~~g~~~e~~~~~~ 160 (267)
T PRK07226 94 ----VLVGTVEEAIKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLA-MMYPRGPGIKNEYDPE 160 (267)
T ss_pred ----eeeecHHHHHHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEE-EEecCCCccCCCccHH
Confidence 11236889999999988877543321 1346788888999999999998764 3333333233345678
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCC--CcCcHHHHHHHHHHcCCCEEe
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHD--TYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hn--d~GlA~ANaLaAl~aGa~~VD 377 (452)
.+...++.+.++|||.|-..= .| .+ ++++.+.+. .|. +..=+-+ |+-.++++.-.++++||+.+.
T Consensus 161 ~i~~a~~~a~e~GAD~vKt~~-~~--~~----~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis 229 (267)
T PRK07226 161 VVAHAARVAAELGADIVKTNY-TG--DP----ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGVA 229 (267)
T ss_pred HHHHHHHHHHHHCCCEEeeCC-CC--CH----HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 888888999999999997651 11 23 334444432 343 2222333 667789999999999999443
No 149
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.21 E-value=1.1 Score=45.32 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=128.6
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhh
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~ 212 (452)
.+.+..+. .++.+....+++.-.+.+-+.|--.++..-++.+ .+.+...++. ....++++.+.. .
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHl-D------- 82 (281)
T PRK06806 15 QENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHF-D------- 82 (281)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence 34444443 4889999999999999999987766543323222 2222333332 122333332211 0
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
+ + ...+.++.|++.|++.|.+=.+. .+.++.++..++++++|++.|..|.+.+-..
T Consensus 83 -H--~----------~~~e~i~~Al~~G~tsVm~d~s~----------~~~~eni~~t~~v~~~a~~~gv~veaE~ghl- 138 (281)
T PRK06806 83 -H--G----------MTFEKIKEALEIGFTSVMFDGSH----------LPLEENIQKTKEIVELAKQYGATVEAEIGRV- 138 (281)
T ss_pred -C--C----------CCHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE-
Confidence 1 1 02357889999999998875442 3567889999999999999999998777663
Q ss_pred cCCCC-----C--CCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949 293 GCPVE-----G--AIPPSKVAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 361 (452)
Q Consensus 293 g~p~~-----~--r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA 361 (452)
|..+. + .++++.+.++++ +.|+|.+.+ .=.-|.- .|.-=.++++.+++.++ +||..|+ .-|.-
T Consensus 139 G~~d~~~~~~g~s~t~~eea~~f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~ 212 (281)
T PRK06806 139 GGSEDGSEDIEMLLTSTTEAKRFAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGIS 212 (281)
T ss_pred CCccCCcccccceeCCHHHHHHHHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCC
Confidence 42221 1 245655554443 468998888 4444432 22233456777777765 4676665 45888
Q ss_pred HHHHHHHHHcCCCEEeec
Q 012949 362 LPNILISLQMGISTVDCS 379 (452)
Q Consensus 362 ~ANaLaAl~aGa~~VD~S 379 (452)
..|...++++|++.|...
T Consensus 213 ~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 213 PEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHHHHHHHHcCCcEEEEh
Confidence 899999999999977654
No 150
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=96.18 E-value=0.56 Score=49.05 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++..++++.+.+.|++.|-++.. .|.+. |..++++.+++.++.....++.|-- ++
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tGG-----EPllr~dl~eli~~l~~~~gi~~i~itTNG~-lL-------------- 148 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTGG-----EPTLRKDIEDICLQLSSLKGLKTLAMTTNGI-TL-------------- 148 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECC-----CCcchhhHHHHHHHHHhcCCCceEEEeeCcc-hH--------------
Confidence 489999999999999999999888641 24332 4456666666655554223333221 00
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r 299 (452)
.+.++..+++|++.|.|.+-.. + .|.+..-+.. ++.+.+.++.|++.|+ .|.+++... ..
T Consensus 149 -------~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~----~~~vl~~I~~a~~~G~~~vkin~vv~------~g 211 (373)
T PLN02951 149 -------SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKG----HDRVLESIDTAIELGYNPVKVNCVVM------RG 211 (373)
T ss_pred -------HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCC----HHHHHHHHHHHHHcCCCcEEEEEEec------CC
Confidence 1356778889999999986433 2 2222111122 4666677788899997 455433321 12
Q ss_pred CCHHHHHHHHHHHHHCCcCE--EEEcCCcCCCc----HHHHHHHHHHHHHhCC
Q 012949 300 IPPSKVAYVAKELHDMGCFE--ISLGDTIGVGT----PGTVVPMLEAVMAVVP 346 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~--I~L~DT~G~~~----P~~v~~li~~l~~~~p 346 (452)
.+.+.+.++++.+.+.|+.. |.+--.-|... .....++++.+.+.+|
T Consensus 212 ~N~~Ei~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 212 FNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 35678889999998888653 34433333211 1125677777777766
No 151
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=96.17 E-value=0.2 Score=51.02 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
+.++.++.++.+.+.|+++|-+++-..+.+ +. .....++++.|++ .+++++.+++|...
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~----------------- 153 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFR----------------- 153 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCccc-----------------
Confidence 568889999999999999998886433221 11 1123455555554 35666666666432
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r 299 (452)
...+.++..+++|.+.+....-.++.. .+.+-+.+.++.+ ++++.+++. |+.+...++.-+| +
T Consensus 154 -----g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~L----e~l~~ak~~~pgi~~~TgiIVGlG---E-- 219 (302)
T TIGR00510 154 -----GNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSL----KLLERAKEYLPNLPTKSGIMVGLG---E-- 219 (302)
T ss_pred -----CCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHH----HHHHHHHHhCCCCeecceEEEECC---C--
Confidence 012467888899999777765334432 2222344555555 566888887 7888777775442 2
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEc
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLG 323 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~ 323 (452)
+.+++.+..+.+.+.|++.+.+.
T Consensus 220 -Teee~~etl~~Lrelg~d~v~ig 242 (302)
T TIGR00510 220 -TNEEIKQTLKDLRDHGVTMVTLG 242 (302)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEee
Confidence 46888899999999999998874
No 152
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=96.17 E-value=0.88 Score=49.49 Aligned_cols=174 Identities=18% Similarity=0.084 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc---CCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~---~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
+..++-+..+.+.|.+.|++|..+.. | +++.+...++.+. +..+++=+.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p---~~~~v~~~V~~l~~~~~~pISIDT~~--------------------- 217 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---D---DPDVVKEKVKTALDALDSPVIADTPT--------------------- 217 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---C---cHHHHHHHHHHHHhhCCCcEEEeCCC---------------------
Confidence 77888899999999999999975431 2 3344555555432 3333321222
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+.+++|+++|++.|. ++|. .++.++...+++.|..+. ++. .......++
T Consensus 218 -----~~v~eaAL~aGAdiIN---sVs~---------------~~~d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~ 267 (499)
T TIGR00284 218 -----LDELYEALKAGASGVI---MPDV---------------ENAVELASEKKLPEDAFV--VVP-----GNQPTNYEE 267 (499)
T ss_pred -----HHHHHHHHHcCCCEEE---ECCc---------------cchhHHHHHHHHcCCeEE--EEc-----CCCCchHHH
Confidence 2478899999999776 3332 112244566777787664 332 111122378
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHH---HhCCCccEEEEeC--------CCcCcHHHHHHHHHHcCC
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVM---AVVPVEKLAVHLH--------DTYGQSLPNILISLQMGI 373 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~---~~~p~~~l~vH~H--------nd~GlA~ANaLaAl~aGa 373 (452)
+.+.++.+.++|.+.|.+ |..=-..+..+.+-+..++ +.++ .|+-+=.- +..|.-.+-+..|++.||
T Consensus 268 l~~~ie~a~~~Gi~~IIl-DPglg~~~~~l~~sL~~l~~~r~~~~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga 345 (499)
T TIGR00284 268 LAKAVKKLRTSGYSKVAA-DPSLSPPLLGLLESIIRFRRASRLLN-VPLVFGAANVTELVDADSHGVNALLAAIALEAGA 345 (499)
T ss_pred HHHHHHHHHHCCCCcEEE-eCCCCcchHHHHHHHHHHHHHHHhcC-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCC
Confidence 888999999999976555 6422223344444444554 4555 23311111 344555666677889999
Q ss_pred CEEeecc
Q 012949 374 STVDCSV 380 (452)
Q Consensus 374 ~~VD~Sv 380 (452)
++|=++=
T Consensus 346 ~ilrvhd 352 (499)
T TIGR00284 346 SILYVVE 352 (499)
T ss_pred CEEEEcC
Confidence 9775543
No 153
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=96.11 E-value=0.8 Score=47.07 Aligned_cols=147 Identities=19% Similarity=0.136 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++..++++...+.||+-|-++-. .|-+ .|..++.+.+++. +..-.+++.|-- ++
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGG-----EPllR~dl~eIi~~l~~~-~~~~islTTNG~-~L-------------- 100 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGG-----EPLLRKDLDEIIARLARL-GIRDLSLTTNGV-LL-------------- 100 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCC-----CchhhcCHHHHHHHHhhc-ccceEEEecchh-hH--------------
Confidence 589999999999999999999999753 3545 3666667766654 333344554431 11
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d 301 (452)
.+..+..+++|+++|+|..-.=|.....++ |....++++.+-+++|.+.|+. |-.+.-.. - -.+
T Consensus 101 -------~~~a~~Lk~AGl~rVNVSLDsld~e~f~~I--T~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-----k-gvN 165 (322)
T COG2896 101 -------ARRAADLKEAGLDRVNVSLDSLDPEKFRKI--TGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-----K-GVN 165 (322)
T ss_pred -------HHHHHHHHHcCCcEEEeecccCCHHHHHHH--hCCCcHHHHHHHHHHHHHcCCCceEEEEEEe-----c-CCC
Confidence 125677889999999998644333222222 1223377778888999999996 76443321 1 256
Q ss_pred HHHHHHHHHHHHHCCcC--EEEEcCCc
Q 012949 302 PSKVAYVAKELHDMGCF--EISLGDTI 326 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad--~I~L~DT~ 326 (452)
.+++..+++.+.+-|+. -|-+-|+-
T Consensus 166 d~ei~~l~e~~~~~~~~lrfIE~m~~g 192 (322)
T COG2896 166 DDEIEDLLEFAKERGAQLRFIELMPLG 192 (322)
T ss_pred HHHHHHHHHHHhhcCCceEEEEEeecC
Confidence 78999999999999874 66666655
No 154
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=96.09 E-value=0.43 Score=49.98 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=142.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccc
Q 012949 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 141 ~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.+..++.++..+.++.+.+.|+..|-+-+...|...+. -.++.++.+++ .+++.+-++.+.-- .. ..+..
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei---~~---~~~~~- 156 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEI---LF---LAREG- 156 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHh---HH---HHhcc-
Confidence 34579999999999999999999999988777753322 23556666664 34544444443210 00 00000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhh------hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKS------NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~------~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
.....+.++..+++|.+.+-.+- .+++... ..+++.++=| ++.+.|.++|++-.+.+++-.
T Consensus 157 ------~~s~~E~l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~wl----e~~~~Ah~lGI~~tatml~Gh- 223 (370)
T COG1060 157 ------GLSYEEVLKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEWL----EIHERAHRLGIPTTATMLLGH- 223 (370)
T ss_pred ------CCCHHHHHHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHHH----HHHHHHHHcCCCccceeEEEe-
Confidence 01123458888999998665442 2222211 2355555444 566999999999887777532
Q ss_pred CCCCCCCCHHHHHHHH---HHHH-HCC-cCEEEE-----cCC------cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949 294 CPVEGAIPPSKVAYVA---KELH-DMG-CFEISL-----GDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 357 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a---~~l~-~~G-ad~I~L-----~DT------~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd 357 (452)
.++ +++...-. +.+. ++| ...|.+ ..+ ..-.++.++...|+..|-.++. .+...-=-.
T Consensus 224 --~E~---~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w 297 (370)
T COG1060 224 --VET---REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASW 297 (370)
T ss_pred --cCC---HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcc
Confidence 222 44433322 2232 334 333322 122 1224556666666666555553 233333445
Q ss_pred cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-----cccHHHHHHHHHcCCCCC
Q 012949 358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-----NVATEDVVYMLSGLGVET 412 (452)
Q Consensus 358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-----NaalE~vv~~L~~~Gi~t 412 (452)
+-+++.-+.+|+.+||+-+.+|+.. |+- .+ .+| +...|+++.+++..|..+
T Consensus 298 ~~~g~~~~~~~l~~GanD~ggt~~~--E~v-~~-~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 298 LRDGVILAQAALLSGANDLGGTGYE--EKV-NP-AAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred cccchHHHHHHHHhCcccCcCCCcc--ccc-cc-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence 6677777899999999988887776 521 11 244 788999999999888754
No 155
>PRK06267 hypothetical protein; Provisional
Probab=96.03 E-value=1.5 Score=45.46 Aligned_cols=214 Identities=10% Similarity=0.015 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
..+.++.++-++.+.+.|++.+=+...... ...+.+++.+.++.+.+..+. +..+..
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~~~-~s~G~~------------------ 118 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCKQY-LNVGII------------------ 118 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCceE-eecccC------------------
Confidence 468999999999999999985433221111 011234555555554432211 112211
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEE-ecCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIF-ASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~-~s~Sd-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
+.+.+...+.+.|... -..++ .+.+...+.+.++.+ +.++.+++.|+++...+. +|. .+ +
T Consensus 119 --------d~~~~~~~~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~----~~l~~ak~aGi~v~~g~I--iGl-gE---t 180 (350)
T PRK06267 119 --------DFLNINLNEIEGVVGAVETVNPKLHREICPGKPLDKIK----EMLLKAKDLGLKTGITII--LGL-GE---T 180 (350)
T ss_pred --------CHHHHhhccccCceeeeecCCHHHHHhhCCCCCHHHHH----HHHHHHHHcCCeeeeeEE--EeC-CC---C
Confidence 1222222222222222 23333 343333355655555 566899999999875555 442 22 3
Q ss_pred HHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949 302 PSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 371 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a 371 (452)
.+.+.+.++.+.+++++.+.+ ++| .-..+|.++.+++..+|-.+|...|-.=.--+.+..++ .++.+
T Consensus 181 ~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~a 257 (350)
T PRK06267 181 EDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMS 257 (350)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhc
Confidence 678888899999999886542 344 23467789999999999888975441111001111111 25669
Q ss_pred CCCEE--eecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 372 GISTV--DCSVAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 372 Ga~~V--D~Sv~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
||+.+ =-.+++++- ..|+..-+++-..=+.
T Consensus 258 GaN~i~~~p~~g~ylt------~~g~~~~~~~~~~~~~ 289 (350)
T PRK06267 258 GSNVITKFPLFSMYGT------KEGKRVENEIRWTGRE 289 (350)
T ss_pred CcceeeccchhccCcc------cCCCCHHHHHHHhhhh
Confidence 99877 223444455 6677777777554343
No 156
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.01 E-value=0.43 Score=46.99 Aligned_cols=195 Identities=16% Similarity=0.136 Sum_probs=114.4
Q ss_pred HHHHHHCCCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
++.+.++|++.+=.+++. .....|- +-+.+++++.++.+.. +.+++++..- .||+..+.++.+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d-------~GyG~~~~~v~~----- 89 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDAD-------TGYGNDPENVAR----- 89 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-T-------TTSSSSHHHHHH-----
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcc-------cccCchhHHHHH-----
Confidence 567788899999887541 1112222 2356788888887643 4566655332 367765555443
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.++...++|+.-|+|-+.-.. | ..+.=.+.++..++++.+.+..++.++-+.+-. .++.. .....+...+=
T Consensus 90 ---tv~~~~~aG~agi~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART-Da~~~---~~~~~deaI~R 160 (238)
T PF13714_consen 90 ---TVRELERAGAAGINIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIART-DAFLR---AEEGLDEAIER 160 (238)
T ss_dssp ---HHHHHHHCT-SEEEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE-CHHCH---HHHHHHHHHHH
T ss_pred ---HHHHHHHcCCcEEEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEec-ccccc---CCCCHHHHHHH
Confidence 788889999999999988111 2 222223899999999888888888885443111 00100 01123555556
Q ss_pred HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
++...++|||.|.+. |..+++++.++.+.+ + .|+-+..+ .+. -+.-.--+.|+++|-....
T Consensus 161 ~~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~~~~ 221 (238)
T PF13714_consen 161 AKAYAEAGADMIFIP---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSYGNS 221 (238)
T ss_dssp HHHHHHTT-SEEEET---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEETSH
T ss_pred HHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEEcHH
Confidence 677788999999874 446677776666665 2 35666664 333 4444455789888765443
No 157
>PRK08005 epimerase; Validated
Probab=95.94 E-value=0.78 Score=44.38 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
+...-.+-++.|.++|++.+=+-..- -.++|.+.=..++++.+++.++..+-+. +-+-
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMD-G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P------------------- 70 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIED-TSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSP------------------- 70 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccC-CCcCCccccCHHHHHHHHhcCCCCeEEEeccCCH-------------------
Confidence 34455667788899999976663110 0134544322456777776544444432 2111
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
...++..+++|++.|.+-.-+ .....++++++|++|.++...|. |. ++.+
T Consensus 71 ------~~~i~~~~~~gad~It~H~Ea----------------~~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~ 120 (210)
T PRK08005 71 ------QRWLPWLAAIRPGWIFIHAES----------------VQNPSEILADIRAIGAKAGLALN-----PA---TPLL 120 (210)
T ss_pred ------HHHHHHHHHhCCCEEEEcccC----------------ccCHHHHHHHHHHcCCcEEEEEC-----CC---CCHH
Confidence 136788889999988776532 23345778999999999875443 22 4667
Q ss_pred HHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 304 KVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.+.+++.. +|.|-+ +.-.|..--..+.+-|+.+++..+...|++ |=|.-..|+-...++||+.+=+
T Consensus 121 ~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 121 PYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred HHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence 77766653 333322 344455555667777888887666433444 6788889999999999996633
No 158
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.93 E-value=0.32 Score=51.31 Aligned_cols=170 Identities=17% Similarity=0.079 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
.+.++-+++++.|...++..+|+|.+--.. .--++++.+++. ++..+ ++.- + +.+.+.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~------~G~~iVk~Lr~~~~~~~I--~~DL-K--------~~Di~~---- 240 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKK------FGLEVISKIREVRPDAFI--VADL-K--------TLDTGN---- 240 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHH------hCHHHHHHHHHhCCCCeE--EEEe-c--------ccChhh----
Confidence 577888999999988878899999642111 112455666654 33322 2211 1 001110
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
--++.+.++|++.+.+.....+ +.+.++++.+|+.|+++.+.++. | ..+.+
T Consensus 241 -------~vv~~~a~aGAD~vTVH~ea~~---------------~ti~~ai~~akk~GikvgVD~ln----p---~tp~e 291 (391)
T PRK13307 241 -------LEARMAADATADAVVISGLAPI---------------STIEKAIHEAQKTGIYSILDMLN----V---EDPVK 291 (391)
T ss_pred -------HHHHHHHhcCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCEEEEEEcC----C---CCHHH
Confidence 0267788999999988765443 34567889999999887642221 1 11223
Q ss_pred HHHHHHHHHHHCCcCEEEEc---CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 304 KVAYVAKELHDMGCFEISLG---DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~---DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
.+ +.+ ..++|.|.+- |.-+. +. .-+.++.+++..++.++.+ +-|....|.-.++++||+++
T Consensus 292 ~i----~~l-~~~vD~Vllht~vdp~~~--~~-~~~kI~~ikk~~~~~~I~V----dGGI~~eti~~l~~aGADiv 355 (391)
T PRK13307 292 LL----ESL-KVKPDVVELHRGIDEEGT--EH-AWGNIKEIKKAGGKILVAV----AGGVRVENVEEALKAGADIL 355 (391)
T ss_pred HH----HHh-hCCCCEEEEccccCCCcc--cc-hHHHHHHHHHhCCCCcEEE----ECCcCHHHHHHHHHcCCCEE
Confidence 33 333 4578887665 33233 11 2246677776544444555 34788888888999999965
No 159
>PRK15452 putative protease; Provisional
Probab=95.91 E-value=0.11 Score=55.68 Aligned_cols=98 Identities=14% Similarity=0.013 Sum_probs=64.5
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.+++|+++|+|.|.+-...-.... ..-+.+. +.+.+++++|++.|.+|.+++-.. ....+.+.+.++.+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~-~~~~f~~----edl~eav~~ah~~g~kvyvt~n~i-----~~e~el~~~~~~l~ 83 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRV-RNNEFNH----ENLALGINEAHALGKKFYVVVNIA-----PHNAKLKTFIRDLE 83 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhh-hccCCCH----HHHHHHHHHHHHcCCEEEEEecCc-----CCHHHHHHHHHHHH
Confidence 5889999999999888443111110 0112333 457788999999999886443321 11123456777888
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCc
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE 348 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~ 348 (452)
.+.++|+|.|.+.|. | ++..+++..|+.
T Consensus 84 ~l~~~gvDgvIV~d~-G---------~l~~~ke~~p~l 111 (443)
T PRK15452 84 PVIAMKPDALIMSDP-G---------LIMMVREHFPEM 111 (443)
T ss_pred HHHhCCCCEEEEcCH-H---------HHHHHHHhCCCC
Confidence 899999999999992 2 356667777764
No 160
>PRK05481 lipoyl synthase; Provisional
Probab=95.90 E-value=0.42 Score=48.24 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.++.++.++.+.+.|++.|-+.+..... .|. .....++++.+++ .+++++..+.|...
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d-~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~--------------- 142 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRDD-LPDGGAQHFAETIRAIRELNPGTTIEVLIPDFR--------------- 142 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCC-cccccHHHHHHHHHHHHhhCCCcEEEEEccCCC---------------
Confidence 3799999999999999999999987543211 110 1123455666655 45566655555321
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~ 297 (452)
...+.+..++++|.+.+....-.++...+ -+-+.|.++ ..++++.+++. |+.+...++.-| -+
T Consensus 143 -------~~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~----~le~i~~ar~~~pgi~~~t~~IvGf---GE 208 (289)
T PRK05481 143 -------GRMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYER----SLELLKRAKELHPGIPTKSGLMVGL---GE 208 (289)
T ss_pred -------CCHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHH----HHHHHHHHHHhCCCCeEeeeeEEEC---CC
Confidence 01247788889999888876655543222 222445554 44677999999 999988787533 22
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
+.+.+.+..+.+.+.+.+.+.+
T Consensus 209 ---T~ed~~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 209 ---TDEEVLEVMDDLRAAGVDILTI 230 (289)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEE
Confidence 4688888999999999988776
No 161
>PRK09989 hypothetical protein; Provisional
Probab=95.89 E-value=0.49 Score=46.28 Aligned_cols=210 Identities=9% Similarity=-0.016 Sum_probs=106.6
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhh--hccchhhhhhhh
Q 012949 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQ--QCHASVISSNLW 227 (452)
Q Consensus 150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~--~~~~~~i~~~~~ 227 (452)
-.+.++.+.++|++.||+..+.. .+.+++.+.++. .+++++++......+ . .-.|. ..+... ...+.
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~ 85 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDI-N-AGEWGLSALPGRE-HEARA 85 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCcc-C-CCCCcccCCCccH-HHHHH
Confidence 34678889999999999964211 245566666654 355555544221100 0 00000 000000 00000
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
...+.++.|.+.|++.|+++.+..+ -+.+ .+...+.+.++.++|++.|+.+...-......+...-.+.+
T Consensus 86 ~l~~~i~~A~~lg~~~v~v~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~ 159 (258)
T PRK09989 86 DIDLALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQY 159 (258)
T ss_pred HHHHHHHHHHHhCcCEEEECccCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHH
Confidence 1124667778899999987654321 0112 23466777788899999998764211100000100011333
Q ss_pred HHHHHHHHHHHCCcCEE-EEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 304 KVAYVAKELHDMGCFEI-SLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I-~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
...+++ .+.+.+.+ ..-|+.-...+. ...++++.... .-..+|.+|..+ ...
T Consensus 160 ~~~~ll---~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~----ri~hvHi~D~~~------------------~~~- 213 (258)
T PRK09989 160 QALAIV---EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAG----KYAHVQIAGLPD------------------RHE- 213 (258)
T ss_pred HHHHHH---HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhh----hEEEEEECCCCC------------------CCC-
Confidence 344444 44454433 445876554432 23344443333 235788886221 111
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 382 GLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 382 GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
+ +.|..+...++.+|+..|++
T Consensus 214 --------p-G~G~id~~~i~~al~~~Gy~ 234 (258)
T PRK09989 214 --------P-DDGEINYPWLFRLFDEVGYQ 234 (258)
T ss_pred --------C-CCCCcCHHHHHHHHHHcCCC
Confidence 2 25779999999999998775
No 162
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=95.87 E-value=0.69 Score=44.92 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhc-cCCceeEE--ecchhhhhhhhhhhhhccch
Q 012949 148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l--~~~~~~~i~r~~~~~~~~~~ 220 (452)
..-.+-++.|.++|++.+=+ |.|+ |.+.=..++++.+++. ++..+-+. +.+.
T Consensus 12 ~~l~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p---------------- 70 (220)
T PRK08883 12 ARLGEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPV---------------- 70 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCH----------------
Confidence 34456677888899997766 4443 5443234567777765 45444432 2111
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
...++..+++|++.|.+-.-+ ...+.++++++|++|+++...|. |. +
T Consensus 71 ---------~~~i~~~~~~gad~i~~H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln-----P~---T 117 (220)
T PRK08883 71 ---------DRIIPDFAKAGASMITFHVEA----------------SEHVDRTLQLIKEHGCQAGVVLN-----PA---T 117 (220)
T ss_pred ---------HHHHHHHHHhCCCEEEEcccC----------------cccHHHHHHHHHHcCCcEEEEeC-----CC---C
Confidence 136788889999988876532 23455778999999999874443 22 4
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 301 PPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
+.+.+.+++.. +|.|-+ +.+.|...-....+.++.+++..+ ..+|++ |-|.-..|.-..+++|
T Consensus 118 p~~~i~~~l~~-----~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aG 188 (220)
T PRK08883 118 PLHHLEYIMDK-----VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAG 188 (220)
T ss_pred CHHHHHHHHHh-----CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcC
Confidence 56777766653 343333 333443333344445666666543 234555 8899999999999999
Q ss_pred CCEE
Q 012949 373 ISTV 376 (452)
Q Consensus 373 a~~V 376 (452)
|+.+
T Consensus 189 Ad~v 192 (220)
T PRK08883 189 ADMF 192 (220)
T ss_pred CCEE
Confidence 9977
No 163
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.85 E-value=0.56 Score=45.76 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-----hccCCceeEEecchhhhhhhhhhhhhccc
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-----DLEGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-----~~~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
-+.++-.++++.|.+.|++.||+++-. | ++.+.++.++ +.+++.+.+-+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGT------------------ 77 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGS------------------ 77 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEe------------------
Confidence 478999999999999999999999732 2 2344555553 12333333221
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
+ .+.++++.|+++|++.+.-.. .+ .+++++++++|+.+. -+-
T Consensus 78 -V------l~~e~a~~a~~aGA~FiVsP~-~~-------------------~~v~~~~~~~~i~~i-----------PG~ 119 (222)
T PRK07114 78 -I------VDAATAALYIQLGANFIVTPL-FN-------------------PDIAKVCNRRKVPYS-----------PGC 119 (222)
T ss_pred -C------cCHHHHHHHHHcCCCEEECCC-CC-------------------HHHHHHHHHcCCCEe-----------CCC
Confidence 0 124589999999999764221 11 367899999998764 133
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH--HHHHHHHHcCCCE
Q 012949 300 IPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL--PNILISLQMGIST 375 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~--ANaLaAl~aGa~~ 375 (452)
.+|.++. .+.++|++.|-| +++.| | .+++.|+.-+|++++- -+=|... .|.-.=+.+|+..
T Consensus 120 ~TpsEi~----~A~~~Ga~~vKlFPA~~~G---~----~~ikal~~p~p~i~~~----ptGGV~~~~~n~~~yl~aGa~a 184 (222)
T PRK07114 120 GSLSEIG----YAEELGCEIVKLFPGSVYG---P----GFVKAIKGPMPWTKIM----PTGGVEPTEENLKKWFGAGVTC 184 (222)
T ss_pred CCHHHHH----HHHHCCCCEEEECcccccC---H----HHHHHHhccCCCCeEE----eCCCCCcchhcHHHHHhCCCEE
Confidence 4565544 456789998777 34333 3 4677777777864432 3456655 5777777889765
Q ss_pred E
Q 012949 376 V 376 (452)
Q Consensus 376 V 376 (452)
|
T Consensus 185 v 185 (222)
T PRK07114 185 V 185 (222)
T ss_pred E
Confidence 4
No 164
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=95.80 E-value=0.83 Score=46.58 Aligned_cols=167 Identities=17% Similarity=0.101 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.++..++++.+.+.|+..|-++.. - |-+ .|..++++.+++..+. .+.+.+.+..
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltGG-E----Pll~~~l~~li~~i~~~~gi~~v~itTNG~l---------------- 100 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTGG-E----PLLRKDLVELVARLAALPGIEDIALTTNGLL---------------- 100 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECc-c----ccccCCHHHHHHHHHhcCCCCeEEEEeCchh----------------
Confidence 589999999999999999998888642 2 222 2556667766665555 4443332211
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGA 299 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r 299 (452)
..+.++...++|++.|.|.+.. ++...+.-.+. ...++++.+.++.+++.|+. +..++... ..
T Consensus 101 -------l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i~~l~~~G~~~v~in~vv~------~g 165 (334)
T TIGR02666 101 -------LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGIDAALAAGLEPVKLNTVVM------RG 165 (334)
T ss_pred -------HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEe------CC
Confidence 0135677888999999988643 33221211111 12455566777888999997 66443221 11
Q ss_pred CCHHHHHHHHHHHHHCCcC--EEEEcCCcCCCc--H---HHHHHHHHHHHHhCC
Q 012949 300 IPPSKVAYVAKELHDMGCF--EISLGDTIGVGT--P---GTVVPMLEAVMAVVP 346 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~--P---~~v~~li~~l~~~~p 346 (452)
.+.+.+.++++.+.+.|++ -|.+....+... . ....++++.+++.++
T Consensus 166 ~n~~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 166 VNDDEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 3457888899999999975 333444333211 1 124566777777664
No 165
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.77 E-value=0.9 Score=46.95 Aligned_cols=204 Identities=19% Similarity=0.184 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCccc--------ccC---CHHHHHHHHHhc-cCCceeEEecchhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVP--------QLA---DARDVMEAVRDL-EGARLPVLTPNLKVILQR 210 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p--------~~~---D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r 210 (452)
.++.+....+++.-.+.+.+.|--.+.. .-++.+ +-. -.+.+...++.. ....+++.+.- .
T Consensus 20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHL-D----- 93 (340)
T cd00453 20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHT-D----- 93 (340)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEc-C-----
Confidence 3788999999999999999988776551 112111 100 022333333322 23333432210 0
Q ss_pred hhhhhhccchhhhhhhhccHHhHHHHHHcC-----------CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949 211 SILFQQCHASVISSNLWVYLQGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 279 (452)
Q Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G-----------i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~ 279 (452)
.|... ..+.++.|+++| ..-|.+=.|. .+.+|.++..++++++|+.
T Consensus 94 -----H~~~~--------~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~----------l~~eeNi~~T~~vve~Ah~ 150 (340)
T cd00453 94 -----HCAKK--------LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE----------ESLQENIEICSKYLERMSK 150 (340)
T ss_pred -----CCCCC--------CHHHHHHHHHcCCccccccCCCCceeEEecCCC----------CCHHHHHHHHHHHHHHHHH
Confidence 11100 124889999999 7777654332 2468899999999999999
Q ss_pred CCCcEEEEEEeeecCCCC----------CCCCHHHHHHHHHHHHHC-CcCEEE--EcCCcCCC---cHHHHHHHHHHHHH
Q 012949 280 LSIPVRGYVSCVVGCPVE----------GAIPPSKVAYVAKELHDM-GCFEIS--LGDTIGVG---TPGTVVPMLEAVMA 343 (452)
Q Consensus 280 ~G~~V~~~l~~~~g~p~~----------~r~d~e~l~~~a~~l~~~-Gad~I~--L~DT~G~~---~P~~v~~li~~l~~ 343 (452)
.|+.|.+.|-..-|.++. ..++|+...+++++.-+. .+|.+. +.-.=|.- .|.-=.++++.+++
T Consensus 151 ~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~ 230 (340)
T cd00453 151 IGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQE 230 (340)
T ss_pred cCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHH
Confidence 999999888876555433 135788877777544210 055333 32333332 23333455555555
Q ss_pred hCC--------CccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 344 VVP--------VEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 344 ~~p--------~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.++ +++|.+|. .-|+.--....|+..|+.-|+.
T Consensus 231 ~~~~~~gl~~~~~pLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 271 (340)
T cd00453 231 YVSKKHNLPHNSLNFVFHG--GSGSTAQEIKDSVSYGVVKMNI 271 (340)
T ss_pred HHHhhcccCCCCCceEEeC--CCCCCHHHHHHHHHcCCeEEEc
Confidence 552 45666665 5667778888899999875543
No 166
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.71 E-value=0.16 Score=49.37 Aligned_cols=201 Identities=20% Similarity=0.191 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
++..++++...+.|++.|-+.. .+ .....+.+.. .+.++..++ |.-. ...+.- .
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p--------~~--~~~~~~~~~~-~~~~~~~vi~fp~g~-----------~~~~~k--~ 74 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTP--------GY--VKPAAELLAG-SGVKVGLVIGFPFGT-----------STTEPK--G 74 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEG--------GG--HHHHHHHSTT-STSEEEEEESTTTSS-----------STHHHH--T
T ss_pred hhHHHHHHHHHHhCCCEEEECH--------HH--HHHHHHHhhc-cccccceEEEeCCCC-----------Cccccc--c
Confidence 3788899999999999999852 11 1111222221 123444433 2111 000000 0
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
+......++.|++.|++.|.+.+....... -..++.++.+.++++.|++.|+++... .+..+.+.....+++.+
T Consensus 75 ~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~-----~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I 148 (236)
T PF01791_consen 75 YDQIVAEVEEAIRLGADEVDVVINYGALGS-----GNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLI 148 (236)
T ss_dssp CEEEHHHHHHHHHTT-SEEEEEEEHHHHHT-----THHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHH
T ss_pred ccchHHHHHHHHHcCCceeeeecccccccc-----ccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHH
Confidence 000034789999999999999876533211 125678889999999999999998654 33322222223356788
Q ss_pred HHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHh-CCCccEEEEe-----CCCcCcHHHHHHHHHHcCCCEEee
Q 012949 306 AYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAV-VPVEKLAVHL-----HDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~-~p~~~l~vH~-----Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
...++.+.++|+|.|-..=+ ....++..+..+-+.+.+. .|. .+.+.. +.++=-.+.-++..+++||+++=+
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~ 227 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPG-KVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGT 227 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTT-TSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEE
T ss_pred HHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCc-ceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999998877544 2445666666655555432 232 122222 222223467778888999987544
Q ss_pred c
Q 012949 379 S 379 (452)
Q Consensus 379 S 379 (452)
+
T Consensus 228 ~ 228 (236)
T PF01791_consen 228 S 228 (236)
T ss_dssp E
T ss_pred H
Confidence 4
No 167
>PRK06852 aldolase; Validated
Probab=95.70 E-value=0.73 Score=47.01 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=89.8
Q ss_pred hHHHHHHcC------CCEE--EEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 232 GFEAAIAAG------AKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 232 ~ie~a~~~G------i~~V--~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
.++.|++.| ++-| +++.. |+. ..+.|+++.++++.|+++|+++.+ .+|..|.......+++
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH 188 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence 688899988 5544 44444 332 247889999999999999999764 5666665544456789
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCC--CcCcHHHHHHHHHH-cCCCEEe
Q 012949 304 KVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQ-MGISTVD 377 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--d~GlA~ANaLaAl~-aGa~~VD 377 (452)
.+...++.+.++|||.|-..=|. |-..|+.+.+.++.. -| ++|-+=.=- +.--.+..+..|++ +|+..|.
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~-vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GR-TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CC-CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999998886552 224577777766542 12 244342221 22225778888988 9988664
No 168
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=95.68 E-value=0.95 Score=46.21 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
.++.++.+ +.+++.|+..|.+.. .- |-+ .|..++++.+++. +..+. ++.|-- ++
T Consensus 58 ~ls~ee~~---~~i~e~g~~~V~i~G-GE----PLL~pdl~eiv~~~~~~-g~~v~-l~TNG~-ll-------------- 112 (318)
T TIGR03470 58 RLSVEECL---RAVDECGAPVVSIPG-GE----PLLHPEIDEIVRGLVAR-KKFVY-LCTNAL-LL-------------- 112 (318)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeC-cc----ccccccHHHHHHHHHHc-CCeEE-EecCce-eh--------------
Confidence 35666544 456678998887753 22 323 2445566655542 33332 333321 01
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
.+.++...+.+...|.|.+ +..+.|-+.. ..+..++++.+.++.+++.|+.|.++.. + ....+
T Consensus 113 -------~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~v~v~~t--v----~~~~n 176 (318)
T TIGR03470 113 -------EKKLDKFEPSPYLTFSVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFRVTTNTT--L----FNDTD 176 (318)
T ss_pred -------HHHHHHHHhCCCcEEEEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCcEEEEEE--E----eCCCC
Confidence 1245566677888777764 4444443321 2234577778888999999998764332 2 12457
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcC---------CcCCCcHHHHHHHHHHHHHh
Q 012949 302 PSKVAYVAKELHDMGCFEISLGD---------TIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~D---------T~G~~~P~~v~~li~~l~~~ 344 (452)
++.+.++++.+.+.|++.+.+.- .--.+.+.+..++++.+.+.
T Consensus 177 ~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 177 PEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 89999999999999999887731 12245677777777777653
No 169
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.63 E-value=0.63 Score=48.21 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=62.3
Q ss_pred hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC----CCHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA----IPPSKVA 306 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r----~d~e~l~ 306 (452)
.++.|++.|++-|.+.+.. |+. ..+.++.+.++++.|+++|+.+.+ .++..|...... ++++.+.
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia 220 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLTG 220 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHHH
Confidence 6889999999966554321 332 236788999999999999999764 566665443322 2478999
Q ss_pred HHHHHHHHCCcCEEEEcCC
Q 012949 307 YVAKELHDMGCFEISLGDT 325 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L~DT 325 (452)
..++.+.++|||.|-..=|
T Consensus 221 ~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 221 QANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 9999999999998887654
No 170
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.62 E-value=2.7 Score=41.80 Aligned_cols=201 Identities=19% Similarity=0.236 Sum_probs=109.4
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----HhccC-CceeEEec
Q 012949 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLEG-ARLPVLTP 202 (452)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~~-~~l~~l~~ 202 (452)
|+.+|+ |-..--+.+++.+..++.+..+.+.|.+.|++|.-++ |.. +. -+.++.++++ +.+.. ..++.-+.
T Consensus 6 IlN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~-i~~~~E~~rl~~~v~~i~~~~~~plSID 82 (257)
T cd00739 6 ILNVTP-DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DP-VSVEEELERVIPVLEALRGELDVLISVD 82 (257)
T ss_pred EEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CC-CCHHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence 445554 4444444568999999999999999999999996432 321 11 2344444443 33321 12221111
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 282 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~ 282 (452)
.. ..+-+++|++.|++.|.=.....+ + .++++.+++.|.
T Consensus 83 T~------------------------~~~v~e~al~~G~~iINdisg~~~---------------~--~~~~~l~~~~~~ 121 (257)
T cd00739 83 TF------------------------RAEVARAALEAGADIINDVSGGSD---------------D--PAMLEVAAEYGA 121 (257)
T ss_pred CC------------------------CHHHHHHHHHhCCCEEEeCCCCCC---------------C--hHHHHHHHHcCC
Confidence 11 124778899999886652211110 0 244566778887
Q ss_pred cEEEEEEeeecCCCCCC----C------CHHHHHHHHHHHHHCCcC--EEEEcCCc-CCC-cHHHHHHHHHHHH---Hh-
Q 012949 283 PVRGYVSCVVGCPVEGA----I------PPSKVAYVAKELHDMGCF--EISLGDTI-GVG-TPGTVVPMLEAVM---AV- 344 (452)
Q Consensus 283 ~V~~~l~~~~g~p~~~r----~------d~e~l~~~a~~l~~~Gad--~I~L~DT~-G~~-~P~~v~~li~~l~---~~- 344 (452)
.+. ++..-|-|-... + -.+++.+..+.+.++|.+ .|.+ |-- |.. ++++-.++++.++ +.
T Consensus 122 ~vV--~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~~ 198 (257)
T cd00739 122 PLV--LMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQLG 198 (257)
T ss_pred CEE--EECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhCC
Confidence 765 343222221100 0 013455667778889975 6766 652 332 3455555555554 21
Q ss_pred CCCccEE------------EEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 345 VPVEKLA------------VHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 345 ~p~~~l~------------vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+|. -++ ...++..+--++-+..|++.||+++=
T Consensus 199 ~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~iiR 242 (257)
T cd00739 199 LPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIVR 242 (257)
T ss_pred CcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEEE
Confidence 231 122 23345556666777778889988763
No 171
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.58 E-value=0.27 Score=48.61 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=116.1
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhh
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKV 206 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~ 206 (452)
+-=+|-|+-.|. ..+.++..++++...+.|++.+-+.. .+++... +.. ..++++.+-+ +..
T Consensus 20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~------~~~--~~~~~~~~~~-~~~- 80 (258)
T TIGR01949 20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGH------RGY--GKDVGLIIHL-SAS- 80 (258)
T ss_pred EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcc------ccc--CCCCcEEEEE-cCC-
Confidence 344566654442 34677888899999999999999852 1121110 000 1233322111 000
Q ss_pred hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949 207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 286 (452)
Q Consensus 207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~ 286 (452)
..+...... . .....++.|++.|++.|.+.....+ .+..+.++.+..+.+.+++.|+++.+
T Consensus 81 -----~~~g~~~~~---~---~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 81 -----TSLSPDPND---K---RIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred -----CCCCCCCCc---c---eeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 001100000 0 0113688999999998888764221 12345678888888999999998764
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE-EEEeCC--CcCcHHH
Q 012949 287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL-AVHLHD--TYGQSLP 363 (452)
Q Consensus 287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l-~vH~Hn--d~GlA~A 363 (452)
. .+..|-.. +..+++.+.+.++.+.++|||.|.+. . ...++. ++.+.+..+. |+ ..=.-+ |+..++.
T Consensus 142 ~-~~~~Gvh~-~~~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~----l~~~~~~~~i-PVva~GGi~~~~~~~~~~ 211 (258)
T TIGR01949 142 M-MYPRGPHI-DDRDPELVAHAARLGAELGADIVKTP-Y--TGDIDS----FRDVVKGCPA-PVVVAGGPKTNSDREFLQ 211 (258)
T ss_pred E-EeccCccc-ccccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHH----HHHHHHhCCC-cEEEecCCCCCCHHHHHH
Confidence 2 22222111 22456667777788889999999975 2 123333 3444443322 33 222233 6778899
Q ss_pred HHHHHHHcCCCEEee
Q 012949 364 NILISLQMGISTVDC 378 (452)
Q Consensus 364 NaLaAl~aGa~~VD~ 378 (452)
|.-.++++||+.+-.
T Consensus 212 ~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 212 MIKDAMEAGAAGVAV 226 (258)
T ss_pred HHHHHHHcCCcEEeh
Confidence 999999999995543
No 172
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.58 E-value=1.4 Score=42.53 Aligned_cols=164 Identities=17% Similarity=0.183 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCC--cccccC-----------CHHHHHHHHHhc--cCCceeEEecchhhhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQLA-----------DARDVMEAVRDL--EGARLPVLTPNLKVILQ 209 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~--~~p~~~-----------D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~ 209 (452)
.+.++.+++.+.|+.-|.+.||.|.|-|-. ..|... ..+.+++.++.. .++.++...
T Consensus 29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiL-------- 100 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIIL-------- 100 (268)
T ss_pred CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceee--------
Confidence 467888999999999999999999864321 112221 234555555542 223333211
Q ss_pred hhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949 210 RSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 289 (452)
Q Consensus 210 r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~ 289 (452)
++|-.. + ++......++.|+++|+..+.|.+-. .|| ...+-++||++|+....
T Consensus 101 --mgYYNP---I---l~yG~e~~iq~ak~aGanGfiivDlP------------pEE----a~~~Rne~~k~gislvp--- 153 (268)
T KOG4175|consen 101 --MGYYNP---I---LRYGVENYIQVAKNAGANGFIIVDLP------------PEE----AETLRNEARKHGISLVP--- 153 (268)
T ss_pred --eecccH---H---HhhhHHHHHHHHHhcCCCceEeccCC------------hHH----HHHHHHHHHhcCceEEE---
Confidence 121110 1 11223457888999999887776521 223 33556899999987642
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc-----HHHHHHHHHHHHHhCCCccEEE
Q 012949 290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT-----PGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~-----P~~v~~li~~l~~~~p~~~l~v 352 (452)
-..+.+++.-.++.-.+.+ .-||+.-.+|+-- -..+.+|+..+|+...+.|+.+
T Consensus 154 ------LvaPsTtdeRmell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 154 ------LVAPSTTDERMELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred ------eeCCCChHHHHHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 1233444444444443433 2556655555432 2456788888888777767666
No 173
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.55 E-value=1.5 Score=41.83 Aligned_cols=169 Identities=20% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
.+..+-.++++...+.|.+.|-+--. +.+.. .+. +.++.+++..+ +++++-. |..
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~-~~~~~i~~~v~--iPi~~~~----------~i~-------- 82 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSL-EDLRAVREAVS--LPVLRKD----------FII-------- 82 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCH-HHHHHHHHhcC--CCEEECC----------eec--------
Confidence 35567789999999999999976311 00000 122 34556655433 3333211 000
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
....++.+.++|++.|.+....-+ .+.+++++++++..|+.+.+.+. +.+.
T Consensus 83 ----~~~~v~~~~~~Gad~v~l~~~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e 133 (217)
T cd00331 83 ----DPYQIYEARAAGADAVLLIVAALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE 133 (217)
T ss_pred ----CHHHHHHHHHcCCCEEEEeeccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH
Confidence 123789999999999998765322 14556777888889988743221 2333
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV 376 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V 376 (452)
++.+.+.|++.+.+....+...+..+ +++..+++.+| ..++-.= .|.. ..+....+++||+.|
T Consensus 134 ----~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 134 ----LERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred ----HHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence 55566789999988877766666665 66777777763 3333221 2332 378888889998854
No 174
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.54 E-value=0.58 Score=45.47 Aligned_cols=202 Identities=19% Similarity=0.293 Sum_probs=118.4
Q ss_pred chhhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHH
Q 012949 109 DKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~ 188 (452)
.+.+++|.++ +-+|++ -|.. -|+.+...+++++-...|.++|++. +|+ ++.+.
T Consensus 3 ~~l~~~~~~~------~alKVI-----sGLn----NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp-~LV~~ 55 (242)
T PF04481_consen 3 SKLQQAFAQR------RALKVI-----SGLN----NFDAESVAAIVKAAEIGGATFVDIA-----------ADP-ELVKL 55 (242)
T ss_pred hHHHHHHHhC------cchhhe-----eCcc----ccCHHHHHHHHHHHHccCCceEEec-----------CCH-HHHHH
Confidence 3455565555 235555 3444 3899999999999999999999994 454 56777
Q ss_pred HHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHH
Q 012949 189 VRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 268 (452)
Q Consensus 189 i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~ 268 (452)
++.+.+..+. +-..+ .+.+-.+.++|++.|.|-.. |.|-......+.+|.|
T Consensus 56 ~~~~s~lPIC--VSaVe------------------------p~~f~~aV~AGAdliEIGNf--DsFY~qGr~f~a~eVL- 106 (242)
T PF04481_consen 56 AKSLSNLPIC--VSAVE------------------------PELFVAAVKAGADLIEIGNF--DSFYAQGRRFSAEEVL- 106 (242)
T ss_pred HHHhCCCCeE--eecCC------------------------HHHHHHHHHhCCCEEEecch--HHHHhcCCeecHHHHH-
Confidence 7776654433 33222 24677889999998887543 3343333444555555
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--HHHHHHHH----HHH
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLE----AVM 342 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~li~----~l~ 342 (452)
++.+..|++=-.+. |+-++ | .-.+.+.=.+++..+.++|+|.|.=---. ...| ..+-.+|+ .|.
T Consensus 107 ---~Lt~~tR~LLP~~~--LsVTV--P--HiL~ld~Qv~LA~~L~~~GaDiIQTEGgt-ss~p~~~g~lglIekaapTLA 176 (242)
T PF04481_consen 107 ---ALTRETRSLLPDIT--LSVTV--P--HILPLDQQVQLAEDLVKAGADIIQTEGGT-SSKPTSPGILGLIEKAAPTLA 176 (242)
T ss_pred ---HHHHHHHHhCCCCc--eEEec--C--ccccHHHHHHHHHHHHHhCCcEEEcCCCC-CCCCCCcchHHHHHHHhHHHH
Confidence 45566666533333 33222 2 23567888899999999999998642211 1112 11111111 111
Q ss_pred HhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 343 AVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 343 ~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
..+-. ..+.+-.=.--|+.--.+=.|+.+||..|
T Consensus 177 aay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 177 AAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred HHHHHHhccCCceEeccCcchhhHHHHHHcCCccc
Confidence 11100 00111122346888888888999998754
No 175
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.47 E-value=2.7 Score=41.10 Aligned_cols=188 Identities=17% Similarity=0.159 Sum_probs=112.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccc
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHA 219 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~ 219 (452)
+...+.++..++++.-.+.|+..+.+ +|.|+|. -.+.++.-...++...+ |.-. ....
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~---------~~t~- 77 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGA---------NTTA- 77 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCC---------ChHH-
Confidence 44678899999999999999988888 3555552 12333321122222222 2111 0000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
+.....+.|++.|+++|.+.++...+ .....+...+.++.+++.+... ..+-+-|.. ..
T Consensus 78 --------~K~~Ea~~ai~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt-------~~ 136 (228)
T COG0274 78 --------VKAAEAREAIENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILET-------GL 136 (228)
T ss_pred --------HHHHHHHHHHHcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEec-------cc
Confidence 11236678999999999999876443 2345677777787788887765 333322321 23
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
.+.+...+.++.+.++|+|-|-=.= +.|.+|++.+.-|.+.+.. .+++-.----.. ..-+++-+++|+.+|
T Consensus 137 Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~-----~vgvKaSGGIrt-~eda~~~i~aga~Ri 209 (228)
T COG0274 137 LTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGG-----RVGVKASGGIRT-AEDAKAMIEAGATRI 209 (228)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhcc-----CceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence 4566778899999999999764311 1466678877776666532 344444332222 255666778886654
No 176
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=95.45 E-value=1.3 Score=45.16 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.++..++++.+.+.|+..|.++. .- |.+ .|..++++.+++..+ ..+.+.+.+.. +
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~li~~i~~~~~~~~i~itTNG~l--l------------- 107 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG-GE----PLLRKDLEDIIAALAALPGIRDLALTTNGYL--L------------- 107 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcCccCHHHHHHHHHhcCCCceEEEEcCchh--H-------------
Confidence 58999999999999999999998864 22 333 245566666665432 23332222211 0
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r 299 (452)
.+.++...++|++.|.|.+.. ++... ..++ ....++++.+.++.+++.|+ .|..+.... + .
T Consensus 108 --------~~~~~~L~~agl~~i~ISlds~~~e~~-~~i~--~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~---~---g 170 (331)
T PRK00164 108 --------ARRAAALKDAGLDRVNVSLDSLDPERF-KAIT--GRDRLDQVLAGIDAALAAGLTPVKVNAVLM---K---G 170 (331)
T ss_pred --------HHHHHHHHHcCCCEEEEEeccCCHHHh-ccCC--CCCCHHHHHHHHHHHHHCCCCcEEEEEEEE---C---C
Confidence 125677788999999988643 33211 1121 12456777788899999998 666433211 1 1
Q ss_pred CCHHHHHHHHHHHHHCCcC
Q 012949 300 IPPSKVAYVAKELHDMGCF 318 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad 318 (452)
.+.+.+.++++.+.+.|++
T Consensus 171 ~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred CCHHHHHHHHHHHHhCCCe
Confidence 2447888888888899986
No 177
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.43 E-value=0.83 Score=45.74 Aligned_cols=124 Identities=20% Similarity=0.147 Sum_probs=82.9
Q ss_pred hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
++|.|++.|++-|.+.+.. |+. ..+.|+++.++++.|.++|+++-+ .+..|.... .+++.+...++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~---------E~~~l~~l~~v~~ea~~~G~Plla--~~prG~~~~--~~~~~ia~aaR 165 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEY---------EHQSIKNIIQLVDAGLRYGMPVMA--VTAVGKDMV--RDARYFSLATR 165 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCcEEE--EecCCCCcC--chHHHHHHHHH
Confidence 6889999999966554322 332 247889999999999999999875 333332222 25668888999
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC--CcCcHHHHHHHHHHcCCCEEee
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--d~GlA~ANaLaAl~aGa~~VD~ 378 (452)
...++|||.|-..=| . +-++.+.+..|. |+-+=.=- +.--.+.....|+++||..|..
T Consensus 166 iaaELGADiVK~~y~------~---~~f~~vv~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 166 IAAEMGAQIIKTYYV------E---EGFERITAGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHcCCEEecCCC------H---HHHHHHHHcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 999999999887543 1 333444444443 44442211 2233688888999999987754
No 178
>PLN02858 fructose-bisphosphate aldolase
Probab=95.42 E-value=0.88 Score=55.26 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=147.4
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS 211 (452)
Q Consensus 135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~ 211 (452)
+++.+..+. .++.+....+++.-.+.+.+.|--.++..-++.+ .+ +...++.. ....+++.+.- .
T Consensus 1110 ~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~~vpV~lHL-D------ 1177 (1378)
T PLN02858 1110 EKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG----IP-LVSCCIAAAEQASVPITVHF-D------ 1177 (1378)
T ss_pred HHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC----HH-HHHHHHHHHHHCCCCEEEEC-C------
Confidence 345555553 4899999999999999999988776654333222 12 33333321 23333432211 0
Q ss_pred hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
.+ ...+.+.+|+++|.+-|.+=.|. .+.||.++.-++++++|+..|+.|++.|-..
T Consensus 1178 ----Hg----------~~~~~i~~ai~~Gf~SVM~DgS~----------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v 1233 (1378)
T PLN02858 1178 ----HG----------TSKHELLEALELGFDSVMVDGSH----------LSFTENISYTKSISSLAHSKGLMVEAELGRL 1233 (1378)
T ss_pred ----CC----------CCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 11 02358899999999998875443 2468899999999999999999999888876
Q ss_pred ecCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCC--CccEEEEeCC
Q 012949 292 VGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVP--VEKLAVHLHD 356 (452)
Q Consensus 292 ~g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p--~~~l~vH~Hn 356 (452)
-|.++. ..++|+...++++ +-|+|.+.++ -.=|.- .|.-=.++++.+++.++ ++||.+|.
T Consensus 1234 ~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHG-- 1308 (1378)
T PLN02858 1234 SGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHG-- 1308 (1378)
T ss_pred CCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeC--
Confidence 555543 1457776666665 4588855443 344443 24455678899998873 45777766
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHH
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML 421 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~ 421 (452)
.-|..-.....|++.|+.-| |..||--.++.+.+.-...+|+.++..
T Consensus 1309 gSG~~~~~~~~ai~~Gi~Ki------------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858 1309 ASGLPESLIKECIENGVRKF------------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred CCCCCHHHHHHHHHcCCeEE------------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence 45666889999999998766 456666666665532233466555443
No 179
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.35 E-value=2.8 Score=43.74 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=124.6
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc---------cccC---CHHHHHHHHHhc-cCCceeEE
Q 012949 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV---------PQLA---DARDVMEAVRDL-EGARLPVL 200 (452)
Q Consensus 136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~---------p~~~---D~e~v~~~i~~~-~~~~l~~l 200 (452)
.+.+..+. .++.+....+++.-.+..-+.|--.++..-+++ |+.+ ....+...++.. ...++++.
T Consensus 24 ~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPVa 103 (357)
T TIGR01520 24 ENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVV 103 (357)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 33444443 478889999999999999998776654322221 1110 011122333322 22333332
Q ss_pred ecchhhhhhhhhhhhhccchhhhhhhhccH--HhHHHHHHcC-----------CCEEEEEecCChHHHhhhcCCCHHHHH
Q 012949 201 TPNLKVILQRSILFQQCHASVISSNLWVYL--QGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSL 267 (452)
Q Consensus 201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~--~~ie~a~~~G-----------i~~V~i~~s~Sd~~~~~~~~~s~e~~l 267 (452)
+. +. + +. .. +.++.|+++| ..-|.+=.|. .+.|+.+
T Consensus 104 lH-LD--------H--g~----------~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~----------lpfeENI 152 (357)
T TIGR01520 104 LH-TD--------H--CA----------KKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE----------EPIEENI 152 (357)
T ss_pred EE-CC--------C--CC----------CcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC----------CCHHHHH
Confidence 21 00 0 10 11 2466677765 6766654332 3468899
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeecCCCC----C------CCCHHHHHHHHHHHH-HCCcCEE--EEcCCcCCCc---H
Q 012949 268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G------AIPPSKVAYVAKELH-DMGCFEI--SLGDTIGVGT---P 331 (452)
Q Consensus 268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----~------r~d~e~l~~~a~~l~-~~Gad~I--~L~DT~G~~~---P 331 (452)
+.-++++++|+..|+.|.+.|-..-|.++. . .++|+...+++++.. .-|+|.+ .+.-.=|.-. |
T Consensus 153 ~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p 232 (357)
T TIGR01520 153 EICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNV 232 (357)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCC
Confidence 999999999999999999888876455542 1 468888888887652 3377744 4444444432 4
Q ss_pred HHHHHHHHHH----HHhCCC-----ccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 332 GTVVPMLEAV----MAVVPV-----EKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 332 ~~v~~li~~l----~~~~p~-----~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.--.++++.+ ++..+. ++|.+|. .-|+.-.....|+..|+.-|+.
T Consensus 233 ~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KINi 286 (357)
T TIGR01520 233 KLTPDILADGQEYVSEKLGLPAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMNI 286 (357)
T ss_pred ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 3445556666 344321 2266654 6678888999999999987754
No 180
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.33 E-value=1.2 Score=43.67 Aligned_cols=172 Identities=14% Similarity=0.099 Sum_probs=101.7
Q ss_pred HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
.+-++.|.+ |++.+=+-..- -.++|.+.=..++++.+++.++..+-+ ++.+-
T Consensus 18 ~~el~~l~~-g~d~lH~DiMD-G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P------------------------ 71 (229)
T PRK09722 18 KEQIEFLNS-KADYFHIDIMD-GHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDP------------------------ 71 (229)
T ss_pred HHHHHHHHh-CCCEEEEeccc-CccCCCcccCHHHHHHHHhcCCCCeEEEEEecCH------------------------
Confidence 344456666 88876663210 113454432235677787655444333 22221
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++..+++|++.|.+-.-+++ ....++++++|++|+++...|. |. ++.+.+.++
T Consensus 72 -~~~i~~~~~aGad~it~H~Ea~~---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~ 127 (229)
T PRK09722 72 -QDYIDQLADAGADFITLHPETIN---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYY 127 (229)
T ss_pred -HHHHHHHHHcCCCEEEECccCCc---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHH
Confidence 13678888999998887653221 2334678999999999875443 32 456777776
Q ss_pred HHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 309 AKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 309 a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+..+ |.|-+ +.-.|...-..+.+-|+.+++..+...+.+..==|=|.-..|+-...++||+.+=
T Consensus 128 l~~v-----D~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 128 IHLL-----DKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred HHhc-----CEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 6643 32222 3334444445566667777765543223333444778889999999999999763
No 181
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.22 Score=48.24 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
-..+.++-+++++.+.+. ++.||+|-|--.. .--+..+.+|.. ++..+. ...+ -+ +
T Consensus 11 D~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~------eG~~aV~~lr~~~pd~~Iv---AD~K----------t~---D 67 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY-VDIIEVGTPLIKA------EGMRAVRALRELFPDKIIV---ADLK----------TA---D 67 (217)
T ss_pred cccCHHHHHHHHHHhhhc-ceEEEeCcHHHHH------hhHHHHHHHHHHCCCCeEE---eeee----------ec---c
Confidence 357889999999999999 9999999753111 111234455543 443221 1222 00 0
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
. -.=.++.|.++|.|.+.+...+.+ +.+..+++.|++.|.++.+.+..+ .+
T Consensus 68 ~------G~~e~~ma~~aGAd~~tV~g~A~~---------------~TI~~~i~~A~~~~~~v~iDl~~~--------~~ 118 (217)
T COG0269 68 A------GAIEARMAFEAGADWVTVLGAADD---------------ATIKKAIKVAKEYGKEVQIDLIGV--------WD 118 (217)
T ss_pred h------hHHHHHHHHHcCCCEEEEEecCCH---------------HHHHHHHHHHHHcCCeEEEEeecC--------CC
Confidence 0 011567899999999999876654 556788899999999998766532 23
Q ss_pred HHHHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 302 PSKVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
|+ +.++.+.++|++.+.+= -+.|.--+...-+.++.+.+ ++..+.+ +=|+-.-+.-.....|++.|
T Consensus 119 ~~---~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~--~g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 119 PE---QRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD--LGAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred HH---HHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc--cCceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 43 34455566899877761 22354333443333443333 1234555 45888888888888997755
No 182
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=95.31 E-value=0.73 Score=48.42 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh-c--cCCceeEEecchh--hhhhhhhhhhhcc
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-L--EGARLPVLTPNLK--VILQRSILFQQCH 218 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~-~--~~~~l~~l~~~~~--~~i~r~~~~~~~~ 218 (452)
.+..+-.+.++.|.++|++.||+-... -|...+. ...+..++.+++ + .++++.+++++.- .... --++....
T Consensus 29 ~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~-~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-~g~las~d 106 (382)
T TIGR02631 29 RTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPP-QERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFK-DGGFTSND 106 (382)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEecccccCCCCCCh-hHHHHHHHHHHHHHHHhCCeEEEeeccccCCcccc-CCCCCCCC
Confidence 455567788999999999999985211 1111110 011122333432 2 4666666665421 0000 00111111
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHH----HHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE----DSLVRYRAVAHAAKVLSIPVRGYVSC 290 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e----~~l~~~~~~v~~Ak~~G~~V~~~l~~ 290 (452)
..+-+......++.++.|.+.|.+.|.+...-... ......+++ ...+.+..+.++|++.|..|...|..
T Consensus 107 ~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~--~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp 180 (382)
T TIGR02631 107 RSVRRYALRKVLRNMDLGAELGAETYVVWGGREGA--EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP 180 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 11111111112457788889999998887542100 000112233 34455556677888887556555654
No 183
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=95.27 E-value=0.78 Score=46.80 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHhHHHHHHcCCC-EEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-CCHHHHH
Q 012949 230 LQGFEAAIAAGAK-EVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVA 306 (452)
Q Consensus 230 ~~~ie~a~~~Gi~-~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~d~e~l~ 306 (452)
.+.++.+.++|+. .|.+-+ +.||.-++..+|+.. ..+.+.++++.+++.|+.|.++++ +|.|..+. -+.+.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~--t~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~ 192 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS--TFEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMI 192 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHH
Confidence 3577778889987 688865 556655533344332 234555778999999999988887 67675443 2356666
Q ss_pred HHHHHHHHCCcCEEEEcC
Q 012949 307 YVAKELHDMGCFEISLGD 324 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L~D 324 (452)
+.++.+.+++ +.|.+--
T Consensus 193 ~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 193 SSIRKCIPVT-DTVSINP 209 (313)
T ss_pred HHHHHHHhcC-CcEEEEC
Confidence 7788888887 7777543
No 184
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.27 E-value=0.47 Score=49.23 Aligned_cols=136 Identities=14% Similarity=0.087 Sum_probs=93.0
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----------CCC
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAI 300 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----------~r~ 300 (452)
+.+.++++.|..-|.+=.|. .+.+|.++.-++++++|+..|+.|.+.|-.+-|.++. ..+
T Consensus 114 ~~~~~a~~~GftSVMiDgS~----------lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yT 183 (345)
T cd00946 114 EYFKQHGEPLFSSHMLDLSE----------EPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYT 183 (345)
T ss_pred HHHHHhccCCCceEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCC
Confidence 35566778899998654332 2568999999999999999999999888876444432 147
Q ss_pred CHHHHHHHHHHHHH-CCcCEEE--EcCCcCCC---cHHHHHHHHHHH----HHhCC-----CccEEEEeCCCcCcHHHHH
Q 012949 301 PPSKVAYVAKELHD-MGCFEIS--LGDTIGVG---TPGTVVPMLEAV----MAVVP-----VEKLAVHLHDTYGQSLPNI 365 (452)
Q Consensus 301 d~e~l~~~a~~l~~-~Gad~I~--L~DT~G~~---~P~~v~~li~~l----~~~~p-----~~~l~vH~Hnd~GlA~ANa 365 (452)
+|+...+++++.-. .|+|.+. +.-.=|.- .|.--.++++.+ ++.++ .+||.+|. .-|..-...
T Consensus 184 dPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG--gSG~~~e~i 261 (345)
T cd00946 184 QPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG--GSGSTKEEI 261 (345)
T ss_pred CHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC--CCCCCHHHH
Confidence 88888888876533 3777443 33344443 243344555555 66653 34666665 558888999
Q ss_pred HHHHHcCCCEEee
Q 012949 366 LISLQMGISTVDC 378 (452)
Q Consensus 366 LaAl~aGa~~VD~ 378 (452)
..|++.|+.-|+.
T Consensus 262 ~kai~~GI~KiNi 274 (345)
T cd00946 262 REAISYGVVKMNI 274 (345)
T ss_pred HHHHHcCCeeEEe
Confidence 9999999986654
No 185
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=95.24 E-value=0.38 Score=47.37 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=98.4
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC-CCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~-p~~~r~d~e~l~~~a~ 310 (452)
++-.....-+|.+-+....+-++ .+ +-+++.++.|+++|+.|. .|. -.+.......+.++.+
T Consensus 16 d~Le~~g~yID~lKfg~Gt~~l~--------~~---~~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~ 78 (237)
T TIGR03849 16 DYLKVCGDYITFVKFGWGTSALI--------DR---DIVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLN 78 (237)
T ss_pred HHHHHhhhheeeEEecCceEeec--------cH---HHHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHH
Confidence 44444445677777766555442 12 235688899999999875 221 1111223356677888
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CC-CccEEEEeCC-----CcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VEKLAVHLHD-----TYGQSLPNILISLQMGISTV--DCSVA 381 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p-~~~l~vH~Hn-----d~GlA~ANaLaAl~aGa~~V--D~Sv~ 381 (452)
.+.+.|.+.|-|.|..--+.++.-.++|+.++++ +. -..++..... +...-+-.+-..++|||++| ++-=.
T Consensus 79 ~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEs 158 (237)
T TIGR03849 79 ECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRES 158 (237)
T ss_pred HHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhc
Confidence 9999999999999999999999999999999975 21 1124444331 11222335556699999954 66322
Q ss_pred ----CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 382 ----GLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 382 ----GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
|+=+ ..|+.-...+-..+..++
T Consensus 159 g~~~Gi~~------~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 159 GKNIGLFD------EKGNVKEDELDVLAENVD 184 (237)
T ss_pred CCCcceeC------CCCCCchHHHHHHHhhCC
Confidence 4444 567777776666665443
No 186
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=95.24 E-value=0.63 Score=49.94 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=69.7
Q ss_pred HhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+.++...++|...|.+-+ +.|+..++ ++++.. ..+.+.++++.++++|+.+.++++ +|.|.++ .+.+.+.+
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPget---~e~~~~ti 359 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGET---RETIRKTI 359 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCCC---HHHHHHHH
Confidence 467888899999888876 55554333 344432 345566788999999999887666 6777764 67788888
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 343 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~ 343 (452)
+.+.+.+.+.+.+ ..++|.-=-++.+.+++
T Consensus 360 ~~~~~l~~~~~~~----~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 360 DFAKELNPHTIQV----SLAAPYPGTELYDQAKQ 389 (472)
T ss_pred HHHHhcCCCceee----eecccCCCcHHHHHHHH
Confidence 8888888877654 45566554455555554
No 187
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.22 E-value=3.2 Score=40.19 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
..-.+.++.+.+.|++.|-+-..-. .++|...-..+..+.+++.++..+.+ ++.+.
T Consensus 20 ~~l~~~l~~~~~~g~~~ihld~~d~-~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p--------------------- 77 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHVDVMDG-HFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNP--------------------- 77 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccC-CcCCccccCHHHHHHHHhcCCCcEEEEeccCCH---------------------
Confidence 3456678888999999999853211 12343321124566676654433222 12111
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+.++.+.++|++.|.+-... .+ +...+.++.+++.|+.+...+. |. ++.+
T Consensus 78 ----~d~~~~~~~~gad~v~vH~~q~~~---------------d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~- 129 (229)
T PLN02334 78 ----EDYVPDFAKAGASIFTFHIEQAST---------------IHLHRLIQQIKSAGMKAGVVLN-----PG---TPVE- 129 (229)
T ss_pred ----HHHHHHHHHcCCCEEEEeeccccc---------------hhHHHHHHHHHHCCCeEEEEEC-----CC---CCHH-
Confidence 136788899999999555431 11 2334677888889987653221 11 1222
Q ss_pred HHHHHHHHHHCC-cCEEE----EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 305 VAYVAKELHDMG-CFEIS----LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 305 l~~~a~~l~~~G-ad~I~----L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
.++.+.+.| +|.|. .+.+.|-..|....+.++.+++..+..+|.+ +=|.-..|.-..+++||+.|=
T Consensus 130 ---~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 130 ---AVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV 200 (229)
T ss_pred ---HHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence 333444553 88773 3334454456667777788887766545544 446677899999999999773
No 188
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.21 E-value=0.74 Score=44.89 Aligned_cols=170 Identities=18% Similarity=0.116 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhc-cCCceeEE--ecchhhhhhhhhhhhhccch
Q 012949 148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l--~~~~~~~i~r~~~~~~~~~~ 220 (452)
..-.+-++.|.+.|++.+=+ |.|+ |.+.=..++++.+++. ++..+-+. +-+.
T Consensus 16 ~~l~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P---------------- 74 (223)
T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPV---------------- 74 (223)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCH----------------
Confidence 44456678888899997766 4444 5443224567777765 45544442 2111
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
...++..+++|++.|.+-.-++ ....++++++|++|+++...|. |. +
T Consensus 75 ---------~~~i~~~~~~gad~I~~H~Ea~----------------~~~~~~l~~Ir~~g~k~Glaln-----P~---T 121 (223)
T PRK08745 75 ---------DRIVPDFADAGATTISFHPEAS----------------RHVHRTIQLIKSHGCQAGLVLN-----PA---T 121 (223)
T ss_pred ---------HHHHHHHHHhCCCEEEEcccCc----------------ccHHHHHHHHHHCCCceeEEeC-----CC---C
Confidence 1267788889999888765322 2345778999999998875443 22 4
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 301 PPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
+.+.+.+++.. +|.|-+ +.-.|...-..+.+-|+.+++..+...+.+..==|=|....|.-...++||+.+
T Consensus 122 ~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 122 PVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF 196 (223)
T ss_pred CHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence 56777766553 343322 233444444556666677766544322234444477889999999999999855
No 189
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.16 E-value=1.8 Score=44.59 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHH--HHHHHHhCCC
Q 012949 272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPM--LEAVMAVVPV 347 (452)
Q Consensus 272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~l--i~~l~~~~p~ 347 (452)
.+++++-+.|.+|. |+. +..+.+.+...++.+.+.|...|.| | +.++-+|....+| |..+++.++
T Consensus 125 ~LL~~va~~gkPvi--lst-------G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~- 193 (327)
T TIGR03586 125 PLIRYVAKTGKPII--MST-------GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN- 193 (327)
T ss_pred HHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-
Confidence 44566666798886 442 4467899999999999999876666 6 6677667665443 778888885
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
.+|++=-| +.| ...+++|+.+||++|+-=
T Consensus 194 ~pVG~SDH-t~G--~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 194 VPVGLSDH-TLG--ILAPVAAVALGACVIEKH 222 (327)
T ss_pred CCEEeeCC-CCc--hHHHHHHHHcCCCEEEeC
Confidence 57888544 344 688899999999988643
No 190
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.16 E-value=1.1 Score=46.42 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.+-+. .++... ..+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l-~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~ 171 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKL-LFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKE 171 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHH
Confidence 45788889999999999874 444322 234432 2245555778999999996 665555 566655 4678888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
.++.+.+.|++.|.+
T Consensus 172 ~l~~~~~l~~~~is~ 186 (360)
T TIGR00539 172 ELKLAKELPINHLSA 186 (360)
T ss_pred HHHHHHccCCCEEEe
Confidence 889999999988865
No 191
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.14 E-value=3.4 Score=40.81 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHH----HHHHhccC-CceeEEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVM----EAVRDLEG-ARLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~----~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.+..++.++.+.+.|.+.|++|..++ |...| -+.++.+ ..++.+.. .+++.-+-..
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~~~~~E~~rl~~~v~~l~~~~~~piSIDT~------------- 84 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEP--VSVEEELERVIPVLRALAGEPDVPISVDTF------------- 84 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--CCHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------------
Confidence 46889999999999999999999996543 32111 1222223 33333321 1222111111
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
..+-+++|++.|++.|.=....+. + .++++.+++.|..+. +++.-+.+..
T Consensus 85 -----------~~~v~~aaL~~g~~iINdis~~~~---------------~--~~~~~l~~~~~~~vV--~m~~~~~~~~ 134 (258)
T cd00423 85 -----------NAEVAEAALKAGADIINDVSGGRG---------------D--PEMAPLAAEYGAPVV--LMHMDGTPQT 134 (258)
T ss_pred -----------cHHHHHHHHHhCCCEEEeCCCCCC---------------C--hHHHHHHHHcCCCEE--EECcCCCCcc
Confidence 124678899999775543222110 0 244567778887765 3432111110
Q ss_pred C------CCC----HHHHHHHHHHHHHCCc--CEEEEcCC
Q 012949 298 G------AIP----PSKVAYVAKELHDMGC--FEISLGDT 325 (452)
Q Consensus 298 ~------r~d----~e~l~~~a~~l~~~Ga--d~I~L~DT 325 (452)
. ... .+++.+.++.+.++|+ +.|.+ |.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP 173 (258)
T cd00423 135 MQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL-DP 173 (258)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence 0 001 3567777888889995 46666 64
No 192
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.10 E-value=2.3 Score=41.85 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=115.1
Q ss_pred HHHHHHHHCCCCEEEEecCC--CCCccccc--CCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 152 ELIRRLVSSGLPVVEATSFV--SPKWVPQL--ADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~--s~~~~p~~--~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
--++.+.++|++.|=+|+.. .....|-. .+.++++..++.+.. +.+++.+ ... .+|... .++
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~-D~~------~G~g~~-~~~----- 86 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIA-DAD------TGYGNA-LNV----- 86 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEE-EcC------CCCCCH-HHH-----
Confidence 34677888899999998642 11122322 345777887776533 3344332 111 234422 111
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~---~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
.+.++...++|+.-|.|-....+-.. ..+.=.+.++..++++.+++.++.. .+.|.+-. .++ ..+....
T Consensus 87 ---~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART-Da~---~~~~~~~ 159 (243)
T cd00377 87 ---ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART-DAL---LAGEEGL 159 (243)
T ss_pred ---HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc-Cch---hccCCCH
Confidence 23677888899999999766543211 1112347899999987777766664 33222110 001 0111457
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
+...+-++...++|||.|.+. |..+++++.++.+ +.+ .||-+....... .-+.-.--+.|+++|-.....
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~---~~~~~~~~~~~~~----~~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVE---GLKDPEEIRAFAE----APD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHh----cCC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEEChHH
Confidence 888889999999999999985 2336655555544 444 467676544432 122333345788887655543
No 193
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.09 E-value=4.1 Score=40.76 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.++..++|+.|.++|+..+-.+++- +|.-.-.+ .++-++.+++. ....+.+++--..
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d---------------- 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMD---------------- 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCC----------------
Confidence 78999999999999999999999752 32211111 13333444432 2233444432111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
...++.+.+. ++.+.|...... + .++++++-+.|.+|. |+. . ...+
T Consensus 101 --------~~~~~~l~~~-vd~~kIga~~~~----------------n-~~LL~~~a~~gkPV~--lk~----G--~~~s 146 (266)
T PRK13398 101 --------TRDVEEVADY-ADMLQIGSRNMQ----------------N-FELLKEVGKTKKPIL--LKR----G--MSAT 146 (266)
T ss_pred --------hhhHHHHHHh-CCEEEECccccc----------------C-HHHHHHHhcCCCcEE--EeC----C--CCCC
Confidence 1366777776 787777543211 1 134455667788876 332 1 1237
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCc---CCCc-HHHHH-HHHHHHHHhCCCccEEE-EeCCC--cCcHHHHHHHHHHcCC
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTI---GVGT-PGTVV-PMLEAVMAVVPVEKLAV-HLHDT--YGQSLPNILISLQMGI 373 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~---G~~~-P~~v~-~li~~l~~~~p~~~l~v-H~Hnd--~GlA~ANaLaAl~aGa 373 (452)
++.+...++.+...|-..+.|+..- .... +..+. ..+..+++.++ .+|.+ =.|-. .-+..+-+++|+.+||
T Consensus 147 ~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga 225 (266)
T PRK13398 147 LEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGA 225 (266)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCC
Confidence 8888888999999998877777641 1123 33322 23555555554 47888 45543 2355788999999999
Q ss_pred C--EEeeccc
Q 012949 374 S--TVDCSVA 381 (452)
Q Consensus 374 ~--~VD~Sv~ 381 (452)
+ .|+.-+.
T Consensus 226 ~Gl~iE~H~~ 235 (266)
T PRK13398 226 DGLMIEVHPE 235 (266)
T ss_pred CEEEEeccCC
Confidence 9 7765544
No 194
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=95.09 E-value=0.81 Score=45.96 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCC---cccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhc
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK---WVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~---~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
...++.++-.++|+...+.|++++-+++-..-. ...+ -+.+.++.|++. +++++-+|+|....
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G----------- 160 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRG----------- 160 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccC-----------
Confidence 346888999999999999999999999743221 1111 125567777754 67889999987651
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeeecC
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGC 294 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~g~ 294 (452)
....++..++++.+.+.=-+ .+--.+-+...+-+.+.+|.. .+.+|+.+ +..--.||.-.|
T Consensus 161 -----------~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~----L~~~k~~~P~i~TKSgiMlGLG- 224 (306)
T COG0320 161 -----------NDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSL----LERAKELGPDIPTKSGLMVGLG- 224 (306)
T ss_pred -----------CHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHH----HHHHHHhCCCcccccceeeecC-
Confidence 23467777788876432111 111111122346677777754 48888887 434445654332
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEISLGD 324 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D 324 (452)
-+.+.+.+..+-+.++|+|.+.|.-
T Consensus 225 -----Et~~Ev~e~m~DLr~~gvdilTiGQ 249 (306)
T COG0320 225 -----ETDEEVIEVMDDLRSAGVDILTIGQ 249 (306)
T ss_pred -----CcHHHHHHHHHHHHHcCCCEEEecc
Confidence 2468899999999999999998753
No 195
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.03 E-value=0.99 Score=46.78 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=106.2
Q ss_pred hHHHHHHcCCCEEEEEe--cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE-EeeecCCCCCC-----CCHH
Q 012949 232 GFEAAIAAGAKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGA-----IPPS 303 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~--s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l-~~~~g~p~~~r-----~d~e 303 (452)
.++.+++.|.|-|-+.+ ...+.. . -.++.++.+.++.+.|++.|+++.+-+ ++..+..+... .+|+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~ 184 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE 184 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence 57889999999665543 332110 0 023567888999999999999987543 44433222222 5688
Q ss_pred HHHHHHHHHHH--CCcCEEEEcCCc------C------CCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHH
Q 012949 304 KVAYVAKELHD--MGCFEISLGDTI------G------VGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILIS 368 (452)
Q Consensus 304 ~l~~~a~~l~~--~Gad~I~L~DT~------G------~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaA 368 (452)
.+...++.+.+ +|+|.+-+.=+. | +.+-.+..+.++.+.+..|. |+-+ =.--+...-+.....|
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A 263 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHH
Confidence 99999999995 999988884432 1 11445555666666665543 3333 3333555677788889
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCc-----ccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949 369 LQMGISTVDCSVAGLGGCPYAKGASGN-----VATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428 (452)
Q Consensus 369 l~aGa~~VD~Sv~GlGecP~a~graGN-----aalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~ 428 (452)
+++|+.. .+-+.| . +-+..++ ...+.....|+..|+ ++|.++.+.+.+
T Consensus 264 ~~aGa~f-~Gvl~G--R---niwq~~v~~~~~~~~~~~~~~l~~~g~------~~~~~l~~v~~~ 316 (340)
T PRK12858 264 CEAGADF-SGVLCG--R---ATWQDGIEPYAAEGEEARRAWLNTEGV------ANITRLNEVLER 316 (340)
T ss_pred HHcCCCc-cchhhh--H---HHHhhhhccccCCCHHHHHHHHHHHhH------HHHHHHHHHHHH
Confidence 9999841 122221 1 0000222 235556666776654 455556666654
No 196
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.03 E-value=2.6 Score=39.85 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
+.++-.++++.+.+.|++.||+..-. .+..+.++.+++... +...+-+.
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~--------~~~~e~~~~~~~~~~~~~~g~gtv---------------------- 71 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNS--------DQPAELISQLREKLPECIIGTGTI---------------------- 71 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC--------CCHHHHHHHHHHhCCCcEEeEEEE----------------------
Confidence 78889999999999999999998632 134566666665422 21211110
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
...++++.|+++|++.|+.-.-. .+.++.++..++... .| -.+++.
T Consensus 72 ---l~~d~~~~A~~~gAdgv~~p~~~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e 117 (187)
T PRK07455 72 ---LTLEDLEEAIAAGAQFCFTPHVD--------------------PELIEAAVAQDIPII------PG-----ALTPTE 117 (187)
T ss_pred ---EcHHHHHHHHHcCCCEEECCCCC--------------------HHHHHHHHHcCCCEE------cC-----cCCHHH
Confidence 01248999999999999765321 134466777777532 33 234554
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
+. .+.++|+|.|.+=-|.-..- .+.++.++..+|.+|+-. .=|.-..|.-.-+++|++.|=
T Consensus 118 ~~----~A~~~Gadyv~~Fpt~~~~G----~~~l~~~~~~~~~ipvva----iGGI~~~n~~~~l~aGa~~va 178 (187)
T PRK07455 118 IV----TAWQAGASCVKVFPVQAVGG----ADYIKSLQGPLGHIPLIP----TGGVTLENAQAFIQAGAIAVG 178 (187)
T ss_pred HH----HHHHCCCCEEEECcCCcccC----HHHHHHHHhhCCCCcEEE----eCCCCHHHHHHHHHCCCeEEE
Confidence 43 34468999988833311111 355677777666544433 236777999999999998653
No 197
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=95.00 E-value=1.7 Score=39.63 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=59.0
Q ss_pred HhHHHHHHcCCCEEEEEecC-ChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASA-SEAFSK-SNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
+.++...+.|.+.|.+..-. ++...+ .+-+.+ ++.+.+.++.+++.| +.+...+.. |-+ ..+.+.+.+
T Consensus 101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~g~~~v~~~~~~--g~~---~~~~~~~~~ 171 (216)
T smart00729 101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT----VEDVLEAVEKLREAGPIKVSTDLIV--GLP---GETEEDFEE 171 (216)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC----HHHHHHHHHHHHHhCCcceEEeEEe--cCC---CCCHHHHHH
Confidence 47888899999988887653 332222 222333 466677889999999 777765653 323 235788999
Q ss_pred HHHHHHHCCcCEEEEcCC
Q 012949 308 VAKELHDMGCFEISLGDT 325 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~DT 325 (452)
+++.+.+.|++.|.+..-
T Consensus 172 ~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 172 TLKLLKELGPDRVSIFPL 189 (216)
T ss_pred HHHHHHHcCCCeEEeeee
Confidence 999999999998776443
No 198
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.00 E-value=2.5 Score=41.25 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhh
Q 012949 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
...-.+-++.+.++|++.|=+-..- -.|+|.++=-.++++.+++.+...+-+ |+-+.
T Consensus 15 ~~~l~~el~~~~~agad~iH~DVMD-ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p-------------------- 73 (220)
T COG0036 15 FARLGEELKALEAAGADLIHIDVMD-GHFVPNITFGPPVVKALRKITDLPLDVHLMVENP-------------------- 73 (220)
T ss_pred HhHHHHHHHHHHHcCCCEEEEeccC-CCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH--------------------
Confidence 3344566778888999977763211 014465543356788888754444333 22111
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+-++.-+++|++.|.+-.- +-+.+.++++++|++|.++.+.+. |. ++.+.
T Consensus 74 -----~~~i~~fa~agad~It~H~E----------------~~~~~~r~i~~Ik~~G~kaGv~ln-----P~---Tp~~~ 124 (220)
T COG0036 74 -----DRYIEAFAKAGADIITFHAE----------------ATEHIHRTIQLIKELGVKAGLVLN-----PA---TPLEA 124 (220)
T ss_pred -----HHHHHHHHHhCCCEEEEEec----------------cCcCHHHHHHHHHHcCCeEEEEEC-----CC---CCHHH
Confidence 12677788999998887653 224456788999999998874443 32 35566
Q ss_pred HHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE-eec
Q 012949 305 VAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV-DCS 379 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V-D~S 379 (452)
+..+... +|.|-+ +.--|..--..+-+-|+.+++..+... .+-.-=|=|.-..|+-.+.+|||+.+ -+|
T Consensus 125 i~~~l~~-----vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 125 LEPVLDD-----VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred HHHHHhh-----CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 6666653 344433 344555555677777888888776421 23333478999999999999999955 444
No 199
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.98 E-value=2.1 Score=44.65 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.++.+++|+.|.+.|+..+--|++- +|.-.-.+. ++-+..+++. ....+.+++.-.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~--~e~l~~L~~~~~~~Gl~~~t~v~----------------- 190 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG--VEGLKILKQVADEYGLAVISEIV----------------- 190 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCC--HHHHHHHHHHHHHcCCCEEEeeC-----------------
Confidence 67889999999999999999988763 332111111 1223333321 223334443211
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-C
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-I 300 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~ 300 (452)
..++++.+.+. ++.+.|... +. .+ .++++++.+.|.+|. |+. +. .
T Consensus 191 -------d~~~~~~l~~~-vd~lkI~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~ 236 (360)
T PRK12595 191 -------NPADVEVALDY-VDVIQIGAR--NM--------------QN-FELLKAAGRVNKPVL--LKR-------GLSA 236 (360)
T ss_pred -------CHHHHHHHHHh-CCeEEECcc--cc--------------cC-HHHHHHHHccCCcEE--EeC-------CCCC
Confidence 12377888888 888777543 21 11 255677777898876 332 33 5
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcC-C-cCCCcH--H--HHHHHHHHHHHhCCCccEEE-EeCCCcC---cHHHHHHHHHH
Q 012949 301 PPSKVAYVAKELHDMGCFEISLGD-T-IGVGTP--G--TVVPMLEAVMAVVPVEKLAV-HLHDTYG---QSLPNILISLQ 370 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~D-T-~G~~~P--~--~v~~li~~l~~~~p~~~l~v-H~Hnd~G---lA~ANaLaAl~ 370 (452)
+++.+...++.+...|.+.|.|+. . ..+-+| . .+. .|..+++.++ .|+++ =.|- .| +..+-+++|+.
T Consensus 237 t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~-~i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva 313 (360)
T PRK12595 237 TIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDIS-AVPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALA 313 (360)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHH-HHHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHH
Confidence 789999999999999998899987 2 222112 1 222 3556676664 46778 3443 55 67779999999
Q ss_pred cCCC--EEeecc
Q 012949 371 MGIS--TVDCSV 380 (452)
Q Consensus 371 aGa~--~VD~Sv 380 (452)
+||+ .|+.=.
T Consensus 314 ~GAdg~~iE~H~ 325 (360)
T PRK12595 314 IGADGVMAEVHP 325 (360)
T ss_pred cCCCeEEEEecC
Confidence 9996 666554
No 200
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.97 E-value=1.7 Score=43.28 Aligned_cols=166 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
+..+..++++...+.|.+.|-+= .-+++.. .+. +.+..+++. +.++++.... .-
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~-~~l~~v~~~--v~iPvl~kdf----------i~--------- 121 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSL-EYLRAARAA--VSLPVLRKDF----------II--------- 121 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCH-HHHHHHHHh--cCCCEEeeee----------cC---------
Confidence 34466899999999999998662 1222222 122 345555543 2455554221 00
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
..-.++.+.++|+|.|.+-...=+ .+.+.+++++++++|+.+.+.+. +.+.+
T Consensus 122 ---~~~qi~~a~~~GAD~VlLi~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~ 173 (260)
T PRK00278 122 ---DPYQIYEARAAGADAILLIVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL 173 (260)
T ss_pred ---CHHHHHHHHHcCCCEEEEEeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH
Confidence 112688999999999999876411 15677889999999998763332 23333
Q ss_pred HHHHHHHHHCCcCEEEEcC-CcCCCcHHHHHHHHHHHHHhCCCc-c-EE-EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 306 AYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLEAVMAVVPVE-K-LA-VHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~-~-l~-vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
+.+.++|++.|.+.. ......|. .+.+..+.+.+|.. + |. -..+ ...++..++++|++.|
T Consensus 174 ----~~A~~~gadiIgin~rdl~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 174 ----ERALKLGAPLIGINNRNLKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV 237 (260)
T ss_pred ----HHHHHcCCCEEEECCCCcccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence 446678999999864 01112222 22334444545531 2 22 1222 3567788889999866
No 201
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.97 E-value=1.4 Score=44.61 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=88.2
Q ss_pred HhHHHHHHcCCCEEEEEecC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~ 297 (452)
+..++|.++|.|.|.|-..- |+. +....+|-+.++-.+.+.++++.+|+. ++.+.+-++... ...
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~--~~~ 222 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD--FVP 222 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc--cCC
Confidence 35667788999998886531 332 223346777887777788888888874 344443343211 011
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc----------HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT----------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~----------P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa 367 (452)
+..+++...++++.+.++|+|.|.+......-. +..-.++++.+++.++. +|..-.--+ ....+..
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi~---t~~~a~~ 298 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI-PVIAVGGIR---DPEVAEE 298 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC-CEEEeCCCC---CHHHHHH
Confidence 235788899999999999999998755332211 12334677888887753 454432111 2466777
Q ss_pred HHHc-CCCEEee
Q 012949 368 SLQM-GISTVDC 378 (452)
Q Consensus 368 Al~a-Ga~~VD~ 378 (452)
+++. |||.|-.
T Consensus 299 ~l~~g~aD~V~i 310 (327)
T cd02803 299 ILAEGKADLVAL 310 (327)
T ss_pred HHHCCCCCeeee
Confidence 8887 6776643
No 202
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.97 E-value=3.6 Score=39.42 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=104.7
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (452)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~ 202 (452)
+|+.+.+.-.+. .|.-. -+.++..++++...+.|...++++. .+.++.+++..+. +.+..
T Consensus 3 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~~~--Pil~~ 62 (221)
T PRK01130 3 LKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVVDV--PIIGI 62 (221)
T ss_pred cCCCEEEEecCC-CCCCC----CCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhCCC--CEEEE
Confidence 444555554444 32221 3567889999999999999999842 1345666654333 32211
Q ss_pred chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CC
Q 012949 203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LS 281 (452)
Q Consensus 203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G 281 (452)
..+ +. +..+++ .....+.++.++++|++.|-+-.+..+.. .+ +.+.++++.+++ .+
T Consensus 63 ~~~-d~--------~~~~~~---~~~~~~~v~~a~~aGad~I~~d~~~~~~p----~~-------~~~~~~i~~~~~~~~ 119 (221)
T PRK01130 63 IKR-DY--------PDSEVY---ITPTLKEVDALAAAGADIIALDATLRPRP----DG-------ETLAELVKRIKEYPG 119 (221)
T ss_pred Eec-CC--------CCCCce---ECCCHHHHHHHHHcCCCEEEEeCCCCCCC----CC-------CCHHHHHHHHHhCCC
Confidence 111 00 000000 00123478999999999666544321100 00 223467788888 77
Q ss_pred CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949 282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDT 357 (452)
Q Consensus 282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd 357 (452)
+.+.+. . .+++. ++.+.++|+|.|.+. +..+. .....-.++++.+++.+. +++-. .
T Consensus 120 i~vi~~--------v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~ 179 (221)
T PRK01130 120 QLLMAD--------C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----E 179 (221)
T ss_pred CeEEEe--------C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----E
Confidence 775421 1 13444 356788999988652 11111 011122457777777653 34443 5
Q ss_pred cCcH-HHHHHHHHHcCCCEE
Q 012949 358 YGQS-LPNILISLQMGISTV 376 (452)
Q Consensus 358 ~GlA-~ANaLaAl~aGa~~V 376 (452)
.|.. ..++..++++||+.|
T Consensus 180 GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 180 GRINTPEQAKKALELGAHAV 199 (221)
T ss_pred CCCCCHHHHHHHHHCCCCEE
Confidence 6774 678888899998865
No 203
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=94.93 E-value=2.3 Score=42.94 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=80.7
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A-k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
..++.+++.|+..+.+...... ....+.+.++.++.+.+.++.+ ++.|+.+...++.. ...+++.+.+..
T Consensus 77 ~~~~e~~~~Gvt~~E~~~~p~~---~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~ 147 (325)
T cd01320 77 EYLEDAAADGVVYAEIRFSPQL---HTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETL 147 (325)
T ss_pred HHHHHHHHcCCEEEEEEeCchh---hccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHH
Confidence 4677788899987766544211 1245778899999887877666 45788776444321 112456666666
Q ss_pred HHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCE
Q 012949 310 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGIST 375 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~ 375 (452)
+.+.+++.+.+.=.|..| ..+++.+..+++..++. +.++.+|+..+.+ ..+...|++ +|+++
T Consensus 148 ~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 148 ELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 666555444222223322 33677788887777664 4568888876643 334556776 78764
No 204
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.92 E-value=0.24 Score=53.45 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
+...+.++.+.+.|++.|.+ |++= ..|..+.++|+.+++.+|+.++-. +.+.-...+..++++||+.|++.+.|
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 35567888899999999988 8887 788999999999999998876666 66777788899999999999977665
Q ss_pred CCC
Q 012949 383 LGG 385 (452)
Q Consensus 383 lGe 385 (452)
=.-
T Consensus 298 Gs~ 300 (475)
T TIGR01303 298 GAM 300 (475)
T ss_pred Ccc
Confidence 333
No 205
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=94.84 E-value=2.1 Score=42.91 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.++..++++.+.+.|++.|-++. .-| -+ .+..++++.+++. +. .+...+.+..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEP----ll~~~l~~iv~~l~~~-g~~~v~i~TNG~l---------------- 96 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG-GEP----LLRKDLIEIIRRIKDY-GIKDVSMTTNGIL---------------- 96 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC-ccc----ccccCHHHHHHHHHhC-CCceEEEEcCchH----------------
Confidence 58899999999999999999988854 222 22 2445566666543 33 3333332211
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGA 299 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r 299 (452)
..+.++...++|++.|.|.+-. ++...+...+ ...++++.+.++.+++.|+. +.+++... + +
T Consensus 97 -------l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~~~~~G~~~v~i~~v~~---~--g- 160 (302)
T TIGR02668 97 -------LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIESAVDAGLTPVKLNMVVL---K--G- 160 (302)
T ss_pred -------HHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHHHHHcCCCcEEEEEEEe---C--C-
Confidence 0125566778999999987643 4322222122 23566667778888999986 66443321 1 1
Q ss_pred CCHHHHHHHHHHHHHCCcC
Q 012949 300 IPPSKVAYVAKELHDMGCF 318 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad 318 (452)
.+.+.+.++++.+.+.|++
T Consensus 161 ~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred CCHHHHHHHHHHHHhcCCE
Confidence 3567788899999999986
No 206
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.80 E-value=2.8 Score=43.69 Aligned_cols=181 Identities=12% Similarity=0.123 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
=+.++.+++|+.|.+.|++.+--|+|- +|.-.-.+. ++-++.+++. ....+.+++--.
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~---------------- 173 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVM---------------- 173 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeC----------------
Confidence 367889999999999999999988763 343111121 3444444432 223344443211
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
..++++.+.+. +|.+.|....- .+ .++++++-+.|.+|- |+. +..
T Consensus 174 --------d~~~v~~~~~~-~d~lqIga~~~----------------~n-~~LL~~va~t~kPVl--lk~-------G~~ 218 (352)
T PRK13396 174 --------DAADLEKIAEV-ADVIQVGARNM----------------QN-FSLLKKVGAQDKPVL--LKR-------GMA 218 (352)
T ss_pred --------CHHHHHHHHhh-CCeEEECcccc----------------cC-HHHHHHHHccCCeEE--EeC-------CCC
Confidence 12477777776 78888764311 11 244566667788875 432 233
Q ss_pred -CHHHHHHHHHHHHHCCcCEEEEcCC-----c-CCCcHHHH--HHHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHH
Q 012949 301 -PPSKVAYVAKELHDMGCFEISLGDT-----I-GVGTPGTV--VPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILIS 368 (452)
Q Consensus 301 -d~e~l~~~a~~l~~~Gad~I~L~DT-----~-G~~~P~~v--~~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaA 368 (452)
+++.+...++.+...|-..|.|+.. . ++ |... -..|..+++.+. .|+-+ |.=-...+..+.+++|
T Consensus 219 ~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y--~~~~~dl~ai~~lk~~~~-lPVi~DpsH~~G~sd~~~~~a~AA 295 (352)
T PRK13396 219 ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQY--TRNTLDLSVIPVLRSLTH-LPIMIDPSHGTGKSEYVPSMAMAA 295 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCC--CCCCcCHHHHHHHHHhhC-CCEEECCcccCCcHHHHHHHHHHH
Confidence 7899999999999999988888875 3 22 2222 122555666543 34523 3334444566899999
Q ss_pred HHcCCC--EEeeccc
Q 012949 369 LQMGIS--TVDCSVA 381 (452)
Q Consensus 369 l~aGa~--~VD~Sv~ 381 (452)
+.+||+ .|+.=..
T Consensus 296 va~GAdGliIE~H~~ 310 (352)
T PRK13396 296 IAAGTDSLMIEVHPN 310 (352)
T ss_pred HhhCCCeEEEEecCC
Confidence 999999 7776554
No 207
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.76 E-value=1.8 Score=46.25 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=61.5
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.|-+ +.++-.. ..+|+. ...+.+.++++.+++.|+ .|.+.++ +|.|.. +.+.+.+
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L-~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~ 222 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQ-KAVNRI--QPFEFTFALVEAARELGFTSINIDLI--YGLPKQ---TPESFAR 222 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--ccCCCC---CHHHHHH
Confidence 4578888899999998876 4444322 233332 234455577799999998 5766666 566655 4688888
Q ss_pred HHHHHHHCCcCEEEEcC
Q 012949 308 VAKELHDMGCFEISLGD 324 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~D 324 (452)
.++.+.+.|++.|.+-.
T Consensus 223 ~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 223 TLEKVLELRPDRLAVFN 239 (453)
T ss_pred HHHHHHhcCCCEEEEcc
Confidence 99999999999887764
No 208
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.71 E-value=1.3 Score=47.47 Aligned_cols=88 Identities=9% Similarity=0.001 Sum_probs=63.3
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.|-+..-+-.....+|+. ...+.+.++++.+++.|++ |.+.++ +|.|.. +.+.+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli--~GlPgq---t~e~~~~t 224 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI--YGLPHQ---TVESFRET 224 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--EeCCCC---CHHHHHHH
Confidence 457888999999999887644333333344442 2345556778999999997 666666 566654 57888899
Q ss_pred HHHHHHCCcCEEEEcC
Q 012949 309 AKELHDMGCFEISLGD 324 (452)
Q Consensus 309 a~~l~~~Gad~I~L~D 324 (452)
++.+.+.|++.|.+-.
T Consensus 225 l~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 225 LDKVIALSPDRIAVFG 240 (453)
T ss_pred HHHHHhcCCCEEEEec
Confidence 9999999999887754
No 209
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.68 E-value=3.1 Score=41.88 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.+.-.++++.|.+.|++.|=+...... .+.+.+ ..++++.+.+..+-++++++- .. ....+
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE--~~~Lt~eEr~~v~~~~~~~~~g~~pvi~g-v~----------~~t~~- 87 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGE--FFSLTPAEYEQVVEIAVSTAKGKVPVYTG-VG----------GNTSD- 87 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcC--cccCCHHHHHHHHHHHHHHhCCCCcEEEe-cC----------ccHHH-
Confidence 489999999999999999999887532221 123322 233333333222223333321 00 00111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
..+-.+.|.+.|+|.+.+..+ .+ +..+.++.++-+..+.+. .++++..|= . .....+
T Consensus 88 -------ai~~a~~a~~~Gadav~~~pP---~y----~~~s~~~i~~~f~~v~~a---~~~pvilYn---~---~g~~l~ 144 (296)
T TIGR03249 88 -------AIEIARLAEKAGADGYLLLPP---YL----INGEQEGLYAHVEAVCES---TDLGVIVYQ---R---DNAVLN 144 (296)
T ss_pred -------HHHHHHHHHHhCCCEEEECCC---CC----CCCCHHHHHHHHHHHHhc---cCCCEEEEe---C---CCCCCC
Confidence 123567788899999877544 22 234556666655555443 456665432 1 122456
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
++.+.+++++ -...+.++|+.| .+.++.++++ ..++ .+.+ -+|+. +-...+.++.+|++ +.+
T Consensus 145 ~~~~~~La~~----~~nvvgiKds~~--d~~~~~~~~~----~~~~-~~~v~~G~~~---~d~~~~~~~~~Ga~---G~i 207 (296)
T TIGR03249 145 ADTLERLADR----CPNLVGFKDGIG--DMEQMIEITQ----RLGD-RLGYLGGMPT---AEVTAPAYLPLGVT---SYS 207 (296)
T ss_pred HHHHHHHHhh----CCCEEEEEeCCC--CHHHHHHHHH----HcCC-CeEEEeCCCc---chhhHHHHHhCCCC---EEE
Confidence 7766666532 247899999866 5666666543 3343 3433 44421 11234556778984 455
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 381 AGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 381 ~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
.|+ +|..-|.++...+.
T Consensus 208 s~~----------~n~~P~~~~~~~~~ 224 (296)
T TIGR03249 208 SAI----------FNFIPHIARAFYEA 224 (296)
T ss_pred ecH----------HHhhHHHHHHHHHH
Confidence 543 35555665555543
No 210
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=94.67 E-value=0.91 Score=49.19 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=71.5
Q ss_pred HhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+-++...++|+..|.+-+ +.|+..++ .+|+.. ..+.+.++++.++++|+.+.++++ +|.|.+ +.+.+.+.+
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~-~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~ 359 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLD-HFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETY 359 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHH
Confidence 356778889999888865 55554333 344432 344566788999999999876655 677776 468888888
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~ 344 (452)
+.+.+.+++.+.+ ..++|..=-++.+.+++.
T Consensus 360 ~~~~~l~~~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 360 RQLLDWDPDQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred HHHHHcCCCceEE----EEecCCCCcHHHHHHHhh
Confidence 8899999988776 366776655666666554
No 211
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.67 E-value=2.3 Score=42.27 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=83.7
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
++.++.|...|++.|.+-.+.. ...+.+++++.+.+.++.+-+....|...|....+.+..--.+++.+.+++
T Consensus 91 ~~~i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll 163 (274)
T TIGR00587 91 DEELKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYII 163 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHH
Confidence 4578888899999766644321 122557777877777655443222255445543222111124778888887
Q ss_pred HHHHHCCcCEEEEc-CCcCCC-------cHHHHHHHHHHHHHhCC-CccEEEEeCCCcC-cHHHHHHHHHHcCCCEEeec
Q 012949 310 KELHDMGCFEISLG-DTIGVG-------TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG-QSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 310 ~~l~~~Gad~I~L~-DT~G~~-------~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~G-lA~ANaLaAl~aGa~~VD~S 379 (452)
+.+.. .+.+.++ ||.=.. +++.+.++++.+.+.++ +-...+|+||+.. .+ .|.| -+
T Consensus 164 ~~~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H-- 229 (274)
T TIGR00587 164 KVIVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH-- 229 (274)
T ss_pred HhcCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC--
Confidence 76532 1333333 433221 26667778887776654 2236789998742 11 1111 12
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949 380 VAGLGGCPYAKGASGNVATEDVVYMLSGL 408 (452)
Q Consensus 380 v~GlGecP~a~graGNaalE~vv~~L~~~ 408 (452)
..+| .|+.+.+.++..|+..
T Consensus 230 -~~iG--------~G~i~~~~~~~~L~~~ 249 (274)
T TIGR00587 230 -ENIG--------EGIIGFDAFRLIMDDE 249 (274)
T ss_pred -CCcC--------CccCCHHHHHHHHcCc
Confidence 2233 4789999999999763
No 212
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.65 E-value=1.2 Score=46.02 Aligned_cols=142 Identities=21% Similarity=0.136 Sum_probs=88.5
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCCC-C
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV-E 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p~-~ 297 (452)
+..++|.++|.|.|.|-.. .|+..++ ..+|-|.++=.+.+.++++.+|+. |. .|.+-++..-.-+. .
T Consensus 156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~ 235 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence 3667788899999988543 2333222 235777887788888888888874 54 23332331100000 0
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS 374 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~ 374 (452)
.-.++++..++++.+.+.|+|.|.+.. +... .+....++++.+++.++..-+.....+ ...+..+++.| +|
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D 309 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKAD 309 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCC
Confidence 124678889999999999999998832 2221 133456777888888754223444442 67788999987 77
Q ss_pred EEee
Q 012949 375 TVDC 378 (452)
Q Consensus 375 ~VD~ 378 (452)
.|-.
T Consensus 310 ~V~~ 313 (338)
T cd02933 310 LVAF 313 (338)
T ss_pred EEEe
Confidence 6643
No 213
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=94.62 E-value=2.7 Score=40.88 Aligned_cols=220 Identities=20% Similarity=0.175 Sum_probs=114.4
Q ss_pred HHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhcc---chhhhhhhh
Q 012949 152 ELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCH---ASVISSNLW 227 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~---~~~i~~~~~ 227 (452)
++++...++|++.+|+.... ..++- .+.+++.+.++. .++++..+.+.....+ .... ...++.
T Consensus 19 ~~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~------~~~~~~~~~~~~~--- 85 (274)
T COG1082 19 EILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLL------SPDEEEREEALEE--- 85 (274)
T ss_pred HHHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcC------CCchhhHHHHHHH---
Confidence 45566677889999997511 11211 113444444443 3555555443322000 0000 001111
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 306 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~ 306 (452)
.++.++.|.+.|++.|.++.+........ ......+...+.+.++.+.|++.|+.+. +... .-+.....++.
T Consensus 86 -~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~--~e~~-~~~~~~~~~~~--- 158 (274)
T COG1082 86 -LKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLA--LENH-HHPGNVVETGA--- 158 (274)
T ss_pred -HHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceE--Eeec-CCccceeecCH---
Confidence 12366778889999888876543322110 1122336678888899999999987765 3220 00111111112
Q ss_pred HHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949 307 YVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 385 (452)
Q Consensus 307 ~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 385 (452)
+..+.+.+.+-+ .-.+-|+.=...-.. +.+..+++..+- -..+|+||..+-... .+..+ +.
T Consensus 159 ~~~~~~~~~~~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~----~~~~~-----------~~ 220 (274)
T COG1082 159 DALDLLREVDSPNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD----IVNFL-----------GQ 220 (274)
T ss_pred HHHHHHHhcCCCceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc----ccCCC-----------cc
Confidence 233334444333 334447543333222 456666665553 478999999987655 11111 22
Q ss_pred CCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 386 CPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 386 cP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
...+| -|..+..+++..|+..|++
T Consensus 221 -~~~pG-~G~id~~~i~~~L~~~gy~ 244 (274)
T COG1082 221 -HLPPG-DGDIDFKAIFSALREAGYD 244 (274)
T ss_pred -eeCCC-CCCcCHHHHHHHHHHcCCC
Confidence 33344 5889999999999987775
No 214
>PRK09358 adenosine deaminase; Provisional
Probab=94.62 E-value=3.1 Score=42.53 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=78.7
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A-k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
...++.++..|+..+.++... .+ -...|.+.++.++.+.+.++.| ++.|+.+...++.. . ..+++...+.
T Consensus 84 ~~~~~e~~~~Gvty~E~~~~p--~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~ 154 (340)
T PRK09358 84 FEYLEDAAADGVVYAEIRFDP--QL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAARE 154 (340)
T ss_pred HHHHHHHHHcCCEEEEEEeCh--hh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHH
Confidence 346778888999888777542 21 1235788999999888877655 45787766443321 1 1234444444
Q ss_pred HHHHHH--CCcCEE--EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEE
Q 012949 309 AKELHD--MGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV 376 (452)
Q Consensus 309 a~~l~~--~Gad~I--~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~V 376 (452)
++.+.+ .+-..+ .++-.-...+|+.+.+.++..++. +.++.+|+....+ ..+...|++ .|++++
T Consensus 155 ~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri 223 (340)
T PRK09358 155 LEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI 223 (340)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence 444443 332233 343221224677777777776653 3567888876544 345566777 788764
No 215
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.55 E-value=0.76 Score=46.05 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----------cCCcCCCcHH
Q 012949 263 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----------GDTIGVGTPG 332 (452)
Q Consensus 263 ~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L----------~DT~G~~~P~ 332 (452)
.++.++.+.+. .++.+.++.+.|.. .+++.+.+.++.+.++|+|.|.| .+..| ..|.
T Consensus 74 ~~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~ 140 (296)
T cd04740 74 VEAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPE 140 (296)
T ss_pred HHHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHH
Confidence 44555544332 23356666655541 35788999999999999998877 23333 4789
Q ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 333 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 333 ~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.+.++++.+++.+ +.+|.+-.--+..-...-+..+.++||+.|+.
T Consensus 141 ~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 141 AVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999999986 35777776544433444556678899998754
No 216
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=94.53 E-value=2.9 Score=44.76 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=72.5
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.|-+ +.++- ....+|+. ...+.+.++++.+++.|++ |.+.++ +|.|.. +.+.+.+
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~-~l~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~ 222 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKE-VQQAVNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAK 222 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHH-HHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHH
Confidence 4578889999999999876 34432 22334442 2245566788999999996 665565 566654 5788888
Q ss_pred HHHHHHHCCcCEEEEcCC---------------cCCCcHHHHHHHHHHHHHhC
Q 012949 308 VAKELHDMGCFEISLGDT---------------IGVGTPGTVVPMLEAVMAVV 345 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~DT---------------~G~~~P~~v~~li~~l~~~~ 345 (452)
.++.+.+.|++.|.+-.- ....++++..+++..+.+.+
T Consensus 223 tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L 275 (455)
T TIGR00538 223 TLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFL 275 (455)
T ss_pred HHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999998876432 11235666666666665543
No 217
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.53 E-value=3.1 Score=39.56 Aligned_cols=141 Identities=22% Similarity=0.177 Sum_probs=84.3
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
-++.+.+.+++-|-+. + ..++.+ .+..+..++.+.+.+ ++|... .+.+....-++.
T Consensus 22 ~~~~a~~~~~~av~v~----p------------~~v~~~---~~~l~~~~~~v~~~~----~fp~g~-~~~~~k~~eve~ 77 (203)
T cd00959 22 LCDEAKEYGFAAVCVN----P------------CFVPLA---REALKGSGVKVCTVI----GFPLGA-TTTEVKVAEARE 77 (203)
T ss_pred HHHHHHHcCCCEEEEc----H------------HHHHHH---HHHcCCCCcEEEEEE----ecCCCC-CcHHHHHHHHHH
Confidence 5677777888877754 1 122222 222333444444333 445544 455666666888
Q ss_pred HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc----HHHHHHHHHHcCCCEEeecccCCC
Q 012949 312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ----SLPNILISLQMGISTVDCSVAGLG 384 (452)
Q Consensus 312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl----A~ANaLaAl~aGa~~VD~Sv~GlG 384 (452)
+.++|||.|.+.=-.|.. .-..+.+.+..+++...+.++-+ ...+-.+ =.-.+..|+++|||+|=++ .|.+
T Consensus 78 A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~ 155 (203)
T cd00959 78 AIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG 155 (203)
T ss_pred HHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC
Confidence 899999999887777743 33567777888887755444322 1222222 2234677899999999999 4543
Q ss_pred CCCCCCCCCCcccHHHHHHHHH
Q 012949 385 GCPYAKGASGNVATEDVVYMLS 406 (452)
Q Consensus 385 ecP~a~graGNaalE~vv~~L~ 406 (452)
++++.+|++-.+.+
T Consensus 156 --------~~~at~~~v~~~~~ 169 (203)
T cd00959 156 --------PGGATVEDVKLMKE 169 (203)
T ss_pred --------CCCCCHHHHHHHHH
Confidence 24577776555444
No 218
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=94.53 E-value=3 Score=42.74 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccC---CHHHHHHHHHhccCCce-eEEecchhhhhhhhhhhhhcc
Q 012949 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLA---DARDVMEAVRDLEGARL-PVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~---D~e~v~~~i~~~~~~~l-~~l~~~~~~~i~r~~~~~~~~ 218 (452)
.++.++..++++.|.+ .||..|-++.. -|-+. +..++++.++.+..++. ...++.. ...+.
T Consensus 118 ~l~~~e~~~~i~~i~~~~~I~~VilSGG-----DPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~--------v~~p~- 183 (321)
T TIGR03822 118 VLSPAELDAAFAYIADHPEIWEVILTGG-----DPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP--------VADPA- 183 (321)
T ss_pred cCCHHHHHHHHHHHHhCCCccEEEEeCC-----CcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc--------ccChh-
Confidence 3677888888888875 48987777532 12222 23455556655433221 1111100 00000
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 298 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~ 298 (452)
..+.+-++.+.++|.. +.|.+..+.. .+..+.+.++++.+++.|+.+.......-| -
T Consensus 184 --------rit~ell~~L~~~g~~-v~i~l~~~h~----------~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g----v 240 (321)
T TIGR03822 184 --------RVTPALIAALKTSGKT-VYVALHANHA----------RELTAEARAACARLIDAGIPMVSQSVLLRG----V 240 (321)
T ss_pred --------hcCHHHHHHHHHcCCc-EEEEecCCCh----------hhcCHHHHHHHHHHHHcCCEEEEEeeEeCC----C
Confidence 0123456677778844 5555544321 223466778889999999987532211111 1
Q ss_pred CCCHHHHHHHHHHHHHCCcC--EEEEcCCcCC-----CcHHHHHHHHHHHHHhCCC
Q 012949 299 AIPPSKVAYVAKELHDMGCF--EISLGDTIGV-----GTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~-----~~P~~v~~li~~l~~~~p~ 347 (452)
-.+.+.+.++.+.+.++|+. .+...|.++. ..+++..++++.+++.+++
T Consensus 241 Nd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 241 NDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred CCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 13577899999999999986 5666777732 4567889999999998876
No 219
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.51 E-value=1.2 Score=44.39 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC--CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccch
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s--~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
++.--.--++.++++|++.|-+|+..+ ....|. .-+.++++..++.+. .+..+.++.... +.+|...+++
T Consensus 17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~-----fg~y~~~~~~ 91 (254)
T cd06557 17 LTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP-----FGSYQTSPEQ 91 (254)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC-----CCcccCCHHH
Confidence 333334567888999999999884321 011121 135677888777653 334442332222 2224443333
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG- 293 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g- 293 (452)
.++. .++...++|++-|.|-.+ ..+.+.|+.+++.|++|.+.|-.. +|
T Consensus 92 av~~-------a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg 146 (254)
T cd06557 92 ALRN-------AARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGG 146 (254)
T ss_pred HHHH-------HHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCeeccccccceeeeccCC
Confidence 3331 333444599999998764 123355677778888765333221 11
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949 294 CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 294 ~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~ 347 (452)
.-..+|++ .+.+.+-++++.++||+.|.+.= .|. ++++.+.++++.
T Consensus 147 ~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~i 194 (254)
T cd06557 147 YKVQGKTEEEAERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALSI 194 (254)
T ss_pred ceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCC
Confidence 01123444 35677788889999999999964 343 366666666653
No 220
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=94.51 E-value=6.5 Score=42.21 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEecCCCCCcccccC-C-HHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhcc
Q 012949 144 TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLA-D-ARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~~~p~~~-D-~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
.++.++.++.+..+.+. ++..|=+..+.- |-+. + .-+.+..+++ .++.++..-+-+..
T Consensus 59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GE----PLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~------------- 121 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGD----PLANIGKTFQTLELVARQLPDVKLCLSTNGLM------------- 121 (442)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEecCCC----cccCccccHHHHHHHHHhcCCCeEEEECCCCC-------------
Confidence 47899999998888754 566655544332 2221 1 1233444443 34565543333321
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--HHHhh---------h-cCCCHHHH-HHHHHHHHHHHHhCCCcEE
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--AFSKS---------N-INCSIEDS-LVRYRAVAHAAKVLSIPVR 285 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--~~~~~---------~-~~~s~e~~-l~~~~~~v~~Ak~~G~~V~ 285 (452)
..+.++..++.|++.|.|.+...+ .|.+. + .|.+-... +++..+.++++++.|+.|.
T Consensus 122 ----------l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~ 191 (442)
T TIGR01290 122 ----------LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVK 191 (442)
T ss_pred ----------CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEE
Confidence 124678888999999998875443 44321 1 23333332 5666677888899999876
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE------c--CCc------CCCcHHHHHHHHHHHHHhCC
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL------G--DTI------GVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L------~--DT~------G~~~P~~v~~li~~l~~~~p 346 (452)
++.... | + .+.+.+.++++.+.+.|++.+.| + ++. -..+++++.++-+.+.+.+|
T Consensus 192 v~~vlI---p--G-iND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 192 VNSVLI---P--G-INDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred EEEEee---C--C-cCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 544322 1 2 23478999999999999886666 2 111 12355666666666665555
No 221
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.50 E-value=0.083 Score=48.78 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=91.0
Q ss_pred HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949 154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i 233 (452)
++.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++.+........ ........+ -+...-...+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~-~~~~~~~~~-r~~~~~~~~~~i 77 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPD-EENGSANDE-REEALEYLKKAI 77 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTG-TTSTTSSSH-HHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEeccccccccc-ccccCcchh-hHHHHHHHHHHH
Confidence 36788999999999864221111000122333444433 366655554322200000 000000000 000000123477
Q ss_pred HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 313 (452)
Q Consensus 234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~ 313 (452)
+.|...|++.+.+....-+...........+...+.+.++.++|++.|+.+. +....+.......+.+.+.++++.+
T Consensus 78 ~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~l~~~- 154 (213)
T PF01261_consen 78 DLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA--LENHPGPFSETPFSVEEIYRLLEEV- 154 (213)
T ss_dssp HHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE--EE-SSSSSSSEESSHHHHHHHHHHH-
T ss_pred HHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE--EecccCccccchhhHHHHHHHHhhc-
Confidence 8888999999998865100000001112245566677778899999997764 3322111111112225555555544
Q ss_pred HCCcCEEEE-cCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949 314 DMGCFEISL-GDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYG 359 (452)
Q Consensus 314 ~~Gad~I~L-~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~G 359 (452)
+-+.+.+ -|+.=...- ....+.++.+... -..+|.+|..+
T Consensus 155 --~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~ 196 (213)
T PF01261_consen 155 --DSPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG 196 (213)
T ss_dssp --TTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred --CCCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence 4332333 265332222 3555666666554 36799999887
No 222
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.42 E-value=1.4 Score=45.65 Aligned_cols=141 Identities=18% Similarity=0.095 Sum_probs=83.5
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-C------CcEEEEEEeeec
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-S------IPVRGYVSCVVG 293 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G------~~V~~~l~~~~g 293 (452)
+..++|.++|.|.|.|-.. .|+..++. ++|-|.++=.+.+.++++..|+. | +.|..-++..-
T Consensus 148 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~- 226 (353)
T cd04735 148 EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE- 226 (353)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc-
Confidence 3567788899999988642 35544332 36778888888888888888874 4 23333333210
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc----CCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHH
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
...+-.+++...++++.+.++|+|.|.+.-.. ....|..-.+.++.+++.+. .++|-...- .- -...+..+
T Consensus 227 -~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg--i~-t~e~ae~~ 302 (353)
T cd04735 227 -PEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS--IN-TPDDALEA 302 (353)
T ss_pred -ccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC--CC-CHHHHHHH
Confidence 01223467888999999999999999884311 01111112344566666552 345444322 11 23556677
Q ss_pred HHcCCCEE
Q 012949 369 LQMGISTV 376 (452)
Q Consensus 369 l~aGa~~V 376 (452)
++.|||.|
T Consensus 303 l~~gaD~V 310 (353)
T cd04735 303 LETGADLV 310 (353)
T ss_pred HHcCCChH
Confidence 77786643
No 223
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.39 E-value=3.7 Score=36.99 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=79.7
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.+.+.|++.|.+-.............. ..+....+..+.++.+.+... . ..+.+...++
T Consensus 16 ~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~a~ 78 (200)
T cd04722 16 ELAKAAAEAGADAIIVGTRSSDPEEAETDDK---------EVLKEVAAETDLPLGVQLAIN------D--AAAAVDIAAA 78 (200)
T ss_pred HHHHHHHcCCCCEEEEeeEEECcccCCCccc---------cHHHHHHhhcCCcEEEEEccC------C--chhhhhHHHH
Confidence 4777788889998887654322111100000 112233344566665444321 1 1223333467
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
.+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.......+. ..++|++.|...-..
T Consensus 79 ~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~ 146 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGG 146 (200)
T ss_pred HHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCc
Confidence 8899999999999888764 8889999999999886666666555544332221 578899988765443
No 224
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.39 E-value=3.1 Score=39.05 Aligned_cols=175 Identities=19% Similarity=0.165 Sum_probs=93.4
Q ss_pred hcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc----CC
Q 012949 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GA 195 (452)
Q Consensus 120 ~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~----~~ 195 (452)
+..+|+-+.|+|..+-+. +.-.+.++.+.+.|++.|++..... +..+..+.++++. ..
T Consensus 3 ~~~~~~~~~it~~~~~~~----------~~~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~ 64 (212)
T PRK00043 3 MMKLLRLYLITDSRDDSG----------RDLLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRY 64 (212)
T ss_pred CCCCCCEEEEECCccccc----------ccHHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHh
Confidence 456677666766532111 2345677888889999999975321 1223333333321 11
Q ss_pred ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949 196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH 275 (452)
Q Consensus 196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~ 275 (452)
....++. +.++.+.+.|++.|++.....+ ...++
T Consensus 65 ~~~l~~~----------------------------~~~~~a~~~gad~vh~~~~~~~------------------~~~~~ 98 (212)
T PRK00043 65 GVPLIVN----------------------------DRVDLALAVGADGVHLGQDDLP------------------VADAR 98 (212)
T ss_pred CCeEEEe----------------------------ChHHHHHHcCCCEEecCcccCC------------------HHHHH
Confidence 1111221 2788899999999887432110 11223
Q ss_pred HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc---CCc-CCC-cHHHHHHHHHHHHHhCCCccE
Q 012949 276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---DTI-GVG-TPGTVVPMLEAVMAVVPVEKL 350 (452)
Q Consensus 276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~---DT~-G~~-~P~~v~~li~~l~~~~p~~~l 350 (452)
..+..+..+. ++ + + +++. +.++.+.|+|.|.+. +|. .-. .|..-.+.++.+++.++..++
T Consensus 99 ~~~~~~~~~g--~~----~--~---t~~e----~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 163 (212)
T PRK00043 99 ALLGPDAIIG--LS----T--H---TLEE----AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPI 163 (212)
T ss_pred HHcCCCCEEE--Ee----C--C---CHHH----HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE
Confidence 3444555443 22 1 1 2333 344557899999763 221 111 011113445555655553455
Q ss_pred EEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 351 AVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 351 ~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
..-+ |....|.-.++.+||+.|=
T Consensus 164 ~a~G----GI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 164 VAIG----GITPENAPEVLEAGADGVA 186 (212)
T ss_pred EEEC----CcCHHHHHHHHHcCCCEEE
Confidence 5543 6667899999999999773
No 225
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.36 E-value=1.4 Score=45.44 Aligned_cols=138 Identities=22% Similarity=0.147 Sum_probs=87.4
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r 299 (452)
+..+.|.++|.|.|.|-.. .|+..++ .++|-|.++=.+.+.++++..|+. ++.|.+-++..-. ..+-
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~--~~~G 223 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDY--HPGG 223 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc--CCCC
Confidence 3566778899999988654 2554433 336778888888888888888775 4555444442100 1112
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcCCC-------cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~-------~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
.+++...++++.+.++|+|.|.+. .|.. .|....++.+.+++.++..-+....-++ ...+.++++.|
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g 297 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNN 297 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcC
Confidence 468899999999999999999883 3431 1222345677788776532234433333 35677788887
Q ss_pred -CCEE
Q 012949 373 -ISTV 376 (452)
Q Consensus 373 -a~~V 376 (452)
+|.|
T Consensus 298 ~~D~V 302 (337)
T PRK13523 298 RADLI 302 (337)
T ss_pred CCChH
Confidence 6754
No 226
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.35 E-value=2.2 Score=42.66 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC--CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccch
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s--~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
++.--..-++.++++|++.|-+|+..+ ....|. .-+.++++..++.+. .+..+.++..+. +-+|+..+.+
T Consensus 20 ~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~p-----fg~y~~~~~~ 94 (264)
T PRK00311 20 LTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMP-----FGSYQASPEQ 94 (264)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCC-----CCCccCCHHH
Confidence 333334567889999999999884321 011121 125577887777653 233322222221 1123222222
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG- 293 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g- 293 (452)
.++ ..++...++|++-|.|-.+ ..+.+.|+.+.+.|++|.+.|-.. +|
T Consensus 95 av~-------~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg 149 (264)
T PRK00311 95 ALR-------NAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGG 149 (264)
T ss_pred HHH-------HHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEeeeecccceeecccCC
Confidence 222 1233344499999998764 122355677778898886443321 00
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949 294 CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 294 ~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v 352 (452)
.-.-+|++ .+.+.+-++++.++||+.|.+.= .|. ++++.+.++++...|++
T Consensus 150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~-----v~~---~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLEC-----VPA---ELAKEITEALSIPTIGI 202 (264)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCCCEEEe
Confidence 00123433 34677788889999999999953 244 35566666665433443
No 227
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.33 Score=48.91 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCc-HHHHHHHHHHHHHhCCC
Q 012949 271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGT-PGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~-P~~v~~li~~l~~~~p~ 347 (452)
+.+.+.||+.|+-|-+ |. -.+.|.+..+.+++.+.+.. .|.+.. +..++. -..++.++..+.+.++
T Consensus 7 ~~ll~~Ake~~yAvpA-----fN-----~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~- 75 (286)
T COG0191 7 KELLDKAKENGYAVPA-----FN-----INNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG- 75 (286)
T ss_pred HHHHHHHHHcCCceee-----ee-----ecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-
Confidence 6778999999987642 32 23578898999999998876 444433 223333 4678889999999998
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
+|+.+| -|-|....-...|+++|.. ++|+|...+=| | .-+.+++...+.
T Consensus 76 vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE---------Ni~~tkevv~~ah~ 127 (286)
T COG0191 76 VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE---------NIAITKEVVEFAHA 127 (286)
T ss_pred CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH---------HHHHHHHHHHHHHH
Confidence 566665 5788899999999999987 88999998877 6 446777777774
No 228
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=94.31 E-value=2.4 Score=42.36 Aligned_cols=209 Identities=15% Similarity=0.186 Sum_probs=126.3
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c-CCceeEEe-
Q 012949 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVS--SGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPVLT- 201 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~--~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~-~~~l~~l~- 201 (452)
+..+|-|+ .+...+.++..++++.-.+ .||..+.+- |.|+| ...+.++.. . ++++...+
T Consensus 11 ~~~ID~Tl------L~p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~------~a~~~L~~~~~~~vkv~tVig 74 (257)
T PRK05283 11 LSLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIP------IARKTLREQGTPEIRIATVTN 74 (257)
T ss_pred HHHhcccC------CCCCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHH------HHHHHhcccCCCCCeEEEEec
Confidence 44667776 3346789999999999998 689888772 33333 223334321 1 35555433
Q ss_pred -cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949 202 -PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 202 -~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
|.- .... + +....++.|++.|+++|.+.+..+-+. ....+...+.+..+++.+..
T Consensus 75 FP~G---------~~~t--~-------~K~~Ea~~Ai~~GAdEiD~Vinig~lk-----~g~~~~v~~ei~~v~~~~~~- 130 (257)
T PRK05283 75 FPHG---------NDDI--D-------IALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFELVKACKEACAA- 130 (257)
T ss_pred CCCC---------CCcH--H-------HHHHHHHHHHHcCCCEEeeeccHHHHh-----CCcHHHHHHHHHHHHHHhCC-
Confidence 321 1111 1 123477889999999999998776542 23466777777777777752
Q ss_pred CCcEEEEEEeeecCCCCCCCCHH-HHHHHHHHHHHCCcCEEEEcCCcC----CCcHHHHHHHHHHHHHh-CCCccEEEEe
Q 012949 281 SIPVRGYVSCVVGCPVEGAIPPS-KVAYVAKELHDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAV-VPVEKLAVHL 354 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~r~d~e-~l~~~a~~l~~~Gad~I~L~DT~G----~~~P~~v~~li~~l~~~-~p~~~l~vH~ 354 (452)
|..+-+-|.. +..+.+ .+.+.++.+.++|||-|- =++| ..+|+.++-|.+.+++. .+. .+++..
T Consensus 131 ~~~lKVIlEt-------~~L~~ee~i~~a~~~a~~aGADFVK--TSTGf~~~gAt~edv~lm~~~i~~~~~~~-~vgIKA 200 (257)
T PRK05283 131 NVLLKVIIET-------GELKDEALIRKASEIAIKAGADFIK--TSTGKVPVNATLEAARIMLEVIRDMGVAK-TVGFKP 200 (257)
T ss_pred CceEEEEEec-------cccCCHHHHHHHHHHHHHhCCCEEE--cCCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEc
Confidence 4444432331 234455 588899999999999654 4455 36788888777776542 122 355544
Q ss_pred C---CCcCcHHHHHHHHH-HcCCCEEeecccCCCC
Q 012949 355 H---DTYGQSLPNILISL-QMGISTVDCSVAGLGG 385 (452)
Q Consensus 355 H---nd~GlA~ANaLaAl-~aGa~~VD~Sv~GlGe 385 (452)
- .|+-.|.+-..++= ..|.++++.-..=+|.
T Consensus 201 sGGIrt~~~A~~~i~ag~~~lg~~~~~~~~fR~G~ 235 (257)
T PRK05283 201 AGGVRTAEDAAQYLALADEILGADWADARHFRFGA 235 (257)
T ss_pred cCCCCCHHHHHHHHHHHHHHhChhhcCcccEeeeh
Confidence 2 34444444333332 3678888877776665
No 229
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=94.29 E-value=1.8 Score=42.35 Aligned_cols=109 Identities=24% Similarity=0.208 Sum_probs=79.9
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc-----cEEEEeCCCcC
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE-----KLAVHLHDTYG 359 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~-----~l~vH~Hnd~G 359 (452)
++.+.|+|... .+.+-=+.-++.+.+.|||+|-+.=.+|.+ ..+.+++-|+.+++..++. .|+.-.=++.-
T Consensus 63 v~tVigFP~G~-~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 63 VCTVIGFPLGA-NTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred EEEecCCCCCC-ChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 56667888754 334444456778889999999888777754 4577888899888887651 24555555555
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
+ ...+..++++|||.|=+|-+. .+|++.+|++..+.+.
T Consensus 142 ~-~~A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~ 179 (228)
T COG0274 142 K-RKACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKET 179 (228)
T ss_pred H-HHHHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHH
Confidence 5 677888999999999998753 3568999999888775
No 230
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.28 E-value=2.1 Score=42.61 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.++.+++++.|.+.|+.....+.+ .+|.-.- ...++-++.+++. ....+.+++.-.
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~--g~g~~gl~~l~~~~~~~Gl~~~t~~~----------------- 97 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQ--GLGEEGLKLLRRAADEHGLPVVTEVM----------------- 97 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhccCceecCCCCCcccc--ccHHHHHHHHHHHHHHhCCCEEEeeC-----------------
Confidence 6788899999999999886554433 1221000 0113334444432 122333333111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI- 300 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~- 300 (452)
..+.++.+.+. ++.+.|... +. .+ .++++++.+.|.+|. |+. +..
T Consensus 98 -------d~~~~~~l~~~-~d~lkI~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~ 143 (260)
T TIGR01361 98 -------DPRDVEIVAEY-ADILQIGAR--NM--------------QN-FELLKEVGKQGKPVL--LKR-------GMGN 143 (260)
T ss_pred -------ChhhHHHHHhh-CCEEEECcc--cc--------------cC-HHHHHHHhcCCCcEE--EeC-------CCCC
Confidence 12367777777 787776543 21 11 245577777898876 332 233
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCC-c-CC-CcHHHH--HHHHHHHHHhCCCccEEE-EeCC--CcCcHHHHHHHHHHcC
Q 012949 301 PPSKVAYVAKELHDMGCFEISLGDT-I-GV-GTPGTV--VPMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQMG 372 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~DT-~-G~-~~P~~v--~~li~~l~~~~p~~~l~v-H~Hn--d~GlA~ANaLaAl~aG 372 (452)
+++.+...++.+.+.|.+.|.|+.. + .+ -.|... -..+..+++.++ .||++ =.|- ..-+..+-+++|+.+|
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~G 222 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAG 222 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcC
Confidence 7899999999999999988888874 2 33 233322 233566676664 47888 4553 2334567788999999
Q ss_pred CC--EEeeccc
Q 012949 373 IS--TVDCSVA 381 (452)
Q Consensus 373 a~--~VD~Sv~ 381 (452)
|+ .|+.-+.
T Consensus 223 a~gl~iE~H~t 233 (260)
T TIGR01361 223 ADGLMIEVHPD 233 (260)
T ss_pred CCEEEEEeCCC
Confidence 99 6665544
No 231
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.24 E-value=0.22 Score=47.40 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=72.3
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC-CCCHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG-AIPPSKVAYVA 309 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~-r~d~e~l~~~a 309 (452)
..++|..-|+.-||.-- .+++ +.+|+ -.++|.+-+-..+ ++.. ..+| -.+-+
T Consensus 4 mA~Aa~~gGA~giR~~~------------------~~dI----~aik~~v~lPIIGi~K~~y--~~~~V~ITP--T~~ev 57 (192)
T PF04131_consen 4 MAKAAEEGGAVGIRANG------------------VEDI----RAIKKAVDLPIIGIIKRDY--PDSDVYITP--TLKEV 57 (192)
T ss_dssp HHHHHHHCT-SEEEEES------------------HHHH----HHHHTTB-S-EEEE-B-SB--TTSS--BS---SHHHH
T ss_pred HHHHHHHCCceEEEcCC------------------HHHH----HHHHHhcCCCEEEEEeccC--CCCCeEECC--CHHHH
Confidence 45677888999999752 1222 22333 3667765444322 1211 1122 12456
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 385 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 385 (452)
+++.++|++.|.| |...-..|..+.++++.+++++ . .+---+- -+...+.|.++|+|.|-+|+.|+=+
T Consensus 58 ~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-~-l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 58 DALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-Q-LVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-S-EEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST
T ss_pred HHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-c-EEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC
Confidence 6778899999999 8899999999999999999987 2 2322221 2689999999999999999999854
No 232
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=94.22 E-value=3.3 Score=44.10 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=91.0
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
.+++++|.+.|++.|.+-... .. ...+.+++++++.+.+..+.+....|...|..+.|....--.+++.+.+++
T Consensus 221 ~~eL~rA~~LGa~~VV~HPGs-~~-----~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Ii 294 (413)
T PTZ00372 221 LDDLQRCEQLGIKLYNFHPGS-TV-----GQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDII 294 (413)
T ss_pred HHHHHHHHHcCCCEEEECCCc-CC-----CCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 458899999999987765432 11 123457888888888877766544466556644322111124678888888
Q ss_pred HHHHHCCcCEEEEcCCc-----CC--CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 310 KELHDMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
+.+.+...-.|+| ||. |+ -+|+.+.++++.+.+.++ +---.+|+||..|-- -+|.|+ | .
T Consensus 295 d~v~~~~rlGvCL-DTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~--------GS~~DR-H---~ 361 (413)
T PTZ00372 295 ALVEDKSRVGVCL-DTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDL--------GSGLDR-H---E 361 (413)
T ss_pred HhcCCcCCeEEEE-EHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCcc--------CCCccc-c---c
Confidence 7764322223444 664 32 367788888888877664 223578999986531 123331 2 2
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 382 GLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 382 GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
.+|+ |+...+.+...++.
T Consensus 362 ~IG~--------G~Ig~~~f~~l~~~ 379 (413)
T PTZ00372 362 NIGK--------GKLGMETFKFIMNS 379 (413)
T ss_pred CcCC--------CCcChHHHHHHHhC
Confidence 3443 66777777777763
No 233
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.21 E-value=2.7 Score=48.64 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=128.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc--------cccc---CCHHHHHHHHHhccC-Cce-eEEecchhhhh
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--------VPQL---ADARDVMEAVRDLEG-ARL-PVLTPNLKVIL 208 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~--------~p~~---~D~e~v~~~i~~~~~-~~l-~~l~~~~~~~i 208 (452)
...++.++.++.++...+.|+..+-+.+...|.. ...+ .+.+.+.+.++.+.. ..+ +-+.++.-
T Consensus 99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~l--- 175 (843)
T PRK09234 99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVM--- 175 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCC---
Confidence 3468999999999999999999988877665541 1111 013444444443321 111 11111110
Q ss_pred hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEec-CChHH-Hh----h--hcCCCHHHHHHHHHHHHHHHHhC
Q 012949 209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAF-SK----S--NINCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~-~~----~--~~~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
..++++..++.|++ ..+..- +++.+ .+ + ..+++.++ + .++++.|+++
T Consensus 176 --------------------s~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~l 230 (843)
T PRK09234 176 --------------------SWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRL 230 (843)
T ss_pred --------------------CHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHc
Confidence 12355566666654 222221 12222 11 0 12334443 4 4788999999
Q ss_pred CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHC-----CcCEEEE------cCCc----CCCcHHHHHHHHHHHHHhC
Q 012949 281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-----GCFEISL------GDTI----GVGTPGTVVPMLEAVMAVV 345 (452)
Q Consensus 281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-----Gad~I~L------~DT~----G~~~P~~v~~li~~l~~~~ 345 (452)
|+++...+++-.| + ++++.++.+..+.+. |+..|.+ .+|- ...+|.+...+|+..|-.+
T Consensus 231 Gi~~tsG~L~GiG---E---t~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 231 SVPFTTGILIGIG---E---TLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVL 304 (843)
T ss_pred CCCccceEEEECC---C---CHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999877775332 2 345555555555544 4554443 2442 3477888888888887777
Q ss_pred CCccEEEEeC-CCcCcHHHHHHHHHHcCCCEEeecc--cCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 346 PVEKLAVHLH-DTYGQSLPNILISLQMGISTVDCSV--AGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 346 p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~VD~Sv--~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
|.. +.+-.- |..|.. -+..+|.+||+=+.++. .+--. +|.+. .+.++++....+..|+.
T Consensus 305 ~~~-~~Iqa~~~l~g~~--~~~~~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~ 366 (843)
T PRK09234 305 GPK-MRIQAPPNLVSGD--ECAALLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT 366 (843)
T ss_pred CCC-ceeeCccccCCHH--HHHHHHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence 642 233222 444543 45678999999888883 33100 01122 36789999999866653
No 234
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.19 E-value=3.8 Score=40.20 Aligned_cols=173 Identities=14% Similarity=0.014 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccc
Q 012949 146 PTGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~ 219 (452)
+...-.+-++.|.++|++++=+ |.| +|.+.=...+++.++. +..+-+ ++.+-
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~F-----VPNitfGp~~i~~i~~--~~~~DvHLMv~~P--------------- 80 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQF-----SPFFTVGAIAIKQFPT--HCFKDVHLMVRDQ--------------- 80 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCc-----CCccccCHHHHHHhCC--CCCEEEEeccCCH---------------
Confidence 4455667788889999998766 444 4544322345666653 222222 22111
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r 299 (452)
.+.++..+++|++.|.+-.-+ .....+++++.|++|..+.+.|.. +|.
T Consensus 81 ----------~~~i~~~~~aGad~It~H~Ea----------------~~~~~~~l~~Ik~~g~~~kaGlal---nP~--- 128 (228)
T PRK08091 81 ----------FEVAKACVAAGADIVTLQVEQ----------------THDLALTIEWLAKQKTTVLIGLCL---CPE--- 128 (228)
T ss_pred ----------HHHHHHHHHhCCCEEEEcccC----------------cccHHHHHHHHHHCCCCceEEEEE---CCC---
Confidence 136788899999988775432 133457789999999944444442 232
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949 300 IPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST 375 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~ 375 (452)
++.+.+.+++.. +|.|-+ +.-.|..--..+.+-|+.+++..+.-.+.+-.==|=|.-..|.-...++|||.
T Consensus 129 Tp~~~i~~~l~~-----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~ 203 (228)
T PRK08091 129 TPISLLEPYLDQ-----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDW 203 (228)
T ss_pred CCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCE
Confidence 466777777653 343322 23334444455666677766654321122223336678888999999999996
Q ss_pred Ee
Q 012949 376 VD 377 (452)
Q Consensus 376 VD 377 (452)
+=
T Consensus 204 ~V 205 (228)
T PRK08091 204 VV 205 (228)
T ss_pred EE
Confidence 53
No 235
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=94.11 E-value=2.3 Score=43.89 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=60.3
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.|-+ +.++.. ...+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~-L~~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli--~GlPgq---t~~~~~~ 169 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDK-LKFLGRI--HSQKQIIKAIENAKKAGFENISIDLI--YDTPLD---NKKLLKE 169 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHH-HHHcCCC--CCHHHHHHHHHHHHHcCCCEEEEEee--cCCCCC---CHHHHHH
Confidence 4578888999999999876 444433 3334542 2244555777999999996 555665 566654 4678888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
.++.+.+.|++.|.+
T Consensus 170 ~l~~~~~l~~~~is~ 184 (350)
T PRK08446 170 ELKLAKELPINHLSA 184 (350)
T ss_pred HHHHHHhcCCCEEEe
Confidence 889999999998865
No 236
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.07 E-value=1.6 Score=44.94 Aligned_cols=139 Identities=18% Similarity=0.158 Sum_probs=89.0
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~ 297 (452)
+..++|+++|.|.|.|-.. .|+..++ ..+|-|.++=.+...++++.+|+. | +.|.+-++..-.. .
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~--~ 230 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ--R 230 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC--C
Confidence 3566788899999988655 4665443 347788898888888999988874 4 4454434321000 1
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc---------------HHHHHHHHHHHHHhCCCccEEE-EeCCCcCcH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---------------PGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQS 361 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---------------P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA 361 (452)
.-.+++...++++.+.++|+|.|.+.. |... +....++.+.+|++++. +|.. -... .
T Consensus 231 ~g~~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~----t 303 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT-PLMVTGGFR----T 303 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCC-CEEEeCCCC----C
Confidence 125788889999999999999998632 2110 11124667778887753 4433 2221 3
Q ss_pred HHHHHHHHHcC-CCEEee
Q 012949 362 LPNILISLQMG-ISTVDC 378 (452)
Q Consensus 362 ~ANaLaAl~aG-a~~VD~ 378 (452)
...+..+++.| ||.|-.
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 56778888887 676543
No 237
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=94.05 E-value=4.6 Score=41.44 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHH-CCCCEEEEecCCCCCccccc-CC--HHHHHHHHHhccCC-------ceeEEecchhhhhhhhhh
Q 012949 145 VPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEGA-------RLPVLTPNLKVILQRSIL 213 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~e~v~~~i~~~~~~-------~l~~l~~~~~~~i~r~~~ 213 (452)
++.++..+++..+.+ .||..|-++- .- |-+ .| .+++++.++.++.+ +++++.|++
T Consensus 125 ~~~~~~~~~i~~i~~~~~i~~VvltG-GE----PL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~r--------- 190 (321)
T TIGR03821 125 PNKAQWKEALEYIAQHPEINEVILSG-GD----PLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDR--------- 190 (321)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeC-cc----cccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHH---------
Confidence 566777777777774 4888777654 22 222 23 34455555543322 222333431
Q ss_pred hhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949 214 FQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293 (452)
Q Consensus 214 ~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g 293 (452)
.+.+-++...+.|...+.+ ++.+-. .|.-+.+.++++.+++.|+.|. +..+.-
T Consensus 191 --------------it~el~~~L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~Gi~v~--~qtvll 243 (321)
T TIGR03821 191 --------------ITSGLCDLLANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAGITLL--NQSVLL 243 (321)
T ss_pred --------------hhHHHHHHHHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcCCEEE--ecceee
Confidence 1223556666778776633 222211 1222446678899999999874 222220
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCE--EEEcCCcCC-----CcHHHHHHHHHHHHHhCCC
Q 012949 294 CPVEGAIPPSKVAYVAKELHDMGCFE--ISLGDTIGV-----GTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 294 ~p~~~r~d~e~l~~~a~~l~~~Gad~--I~L~DT~G~-----~~P~~v~~li~~l~~~~p~ 347 (452)
. .-.-+.+.+.++++.+.++|+.. +...|-+|. ..+++..++++.+++.+++
T Consensus 244 k--giNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 244 R--GVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred C--CCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence 0 00126788999999999999864 444666664 4678899999999998875
No 238
>PRK05660 HemN family oxidoreductase; Provisional
Probab=94.03 E-value=3.2 Score=43.38 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=60.1
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.+-+..-+-..-..+|+. ...+.+.++++.+++.|+.. .+.++ +|-|.. +.+.+.+.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli--~Glpgq---t~~~~~~~ 179 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLM--HGLPDQ---SLEEALDD 179 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 458888999999999998744332223334442 23445556778999999973 45555 566654 57888889
Q ss_pred HHHHHHCCcCEEEE
Q 012949 309 AKELHDMGCFEISL 322 (452)
Q Consensus 309 a~~l~~~Gad~I~L 322 (452)
++.+.+.|++.|.+
T Consensus 180 l~~~~~l~p~~is~ 193 (378)
T PRK05660 180 LRQAIALNPPHLSW 193 (378)
T ss_pred HHHHHhcCCCeEEe
Confidence 99999999998863
No 239
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=94.01 E-value=1.7 Score=45.75 Aligned_cols=151 Identities=12% Similarity=0.151 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
..+.++.++-++.|.+.|++.|-+... ......+......++++.+.+.++....-+. ..+ +..
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~-~~~------------p~~ 232 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLS-SID------------PED 232 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEe-CCC------------hhh
Confidence 478899999999999999998876421 1111000012345566666554433211111 000 000
Q ss_pred hhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEEeeecCC
Q 012949 221 VISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCP 295 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~--~G~~V~~~l~~~~g~p 295 (452)
...+-++...++| ...+.+.+ +.|+.-++. .|+. ...+.+.++++.+++ .|+.+.++++ +|.|
T Consensus 233 -------~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~-m~R~--~~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~P 300 (414)
T TIGR01579 233 -------IDEELLEAIASEKRLCPHLHLSLQSGSDRVLKR-MRRK--YTRDDFLKLVNKLRSVRPDYAFGTDII--VGFP 300 (414)
T ss_pred -------CCHHHHHHHHhcCccCCCeEECCCcCChHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeeeeeEE--EECC
Confidence 1234566666666 57777765 555544433 4433 234566678888888 8888887776 6778
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 301 gET---~ed~~~tl~~i~~~~~~~~~~ 324 (414)
T TIGR01579 301 GES---EEDFQETLRMVKEIEFSHLHI 324 (414)
T ss_pred CCC---HHHHHHHHHHHHhCCCCEEEe
Confidence 764 677888888888888876653
No 240
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=93.90 E-value=7.1 Score=38.39 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
+++..++-...|.+-|...+-+.-.. +...+|-. +..+.+.+++.-.+..+.+.+--.
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~-kf~d~lK~lke~~~l~inaHvGfv-------------------- 98 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLW-KFKDELKALKERTGLLINAHVGFV-------------------- 98 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHH-HHHHHHHHHHHhhCeEEEEEeeec--------------------
Confidence 44455566678889999987775332 33345622 233444455444455555443111
Q ss_pred hhhccHHhHHHHHHcCCCEEEE-EecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAI-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i-~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
..++++..++.++|.+-+ |++-+|+ ++.. +.+|.++.+ +.+++.++.|+.|...|..-. +.++..
T Consensus 99 ----dE~~~eklk~~~vdvvsLDfvgDn~v-Ik~vy~l~ksv~dyl----~~l~~L~e~~irvvpHitiGL---~~gki~ 166 (275)
T COG1856 99 ----DESDLEKLKEELVDVVSLDFVGDNDV-IKRVYKLPKSVEDYL----RSLLLLKENGIRVVPHITIGL---DFGKIH 166 (275)
T ss_pred ----cHHHHHHHHHhcCcEEEEeecCChHH-HHHHHcCCccHHHHH----HHHHHHHHcCceeceeEEEEe---ccCccc
Confidence 124889999999998877 4555554 3333 455655555 556888999999866555322 223443
Q ss_pred HHHHHHHHHHHHHCCcCEEEEc---CCcCC----C---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHH
Q 012949 302 PSKVAYVAKELHDMGCFEISLG---DTIGV----G---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQ 370 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~---DT~G~----~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~ 370 (452)
-|+ +.++.+.++..|.+.|. =|.|. . +|+++...++..|+.+|+ ++.+-|---+|--- ----.|+.
T Consensus 167 ~e~--kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~ 243 (275)
T COG1856 167 GEF--KAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL 243 (275)
T ss_pred chH--HHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence 333 56777888888866552 34442 1 357788888888899998 88888888888653 33456889
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 012949 371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVY 403 (452)
Q Consensus 371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~ 403 (452)
+|+|.|---..|.+| =++-...+.+++
T Consensus 244 ~gVd~It~P~~~t~e------~ak~~r~i~~~~ 270 (275)
T COG1856 244 AGVDRITFPPRGTIE------YAKSIRDIEIIY 270 (275)
T ss_pred cCCceeecCCcccee------hhhhhhhhhhhh
Confidence 999999999999998 455555555554
No 241
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.90 E-value=1.3 Score=44.69 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEE-----cCCc-CC---CcH
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTI-GV---GTP 331 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L-----~DT~-G~---~~P 331 (452)
..+..++.+.+. .++.+.++.++|.. .+++.+.+.++.+.++| +|.|.| .-.. |. ..|
T Consensus 75 g~~~~~~~~~~~---~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~ 142 (301)
T PRK07259 75 GVDAFIEEELPW---LEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP 142 (301)
T ss_pred CHHHHHHHHHHH---HhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH
Confidence 344555544432 23446666655531 35789999999999999 998877 1111 21 358
Q ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 332 GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 332 ~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
+.+.++++.+++.+ +.+|.+..=-+.--...-+..+.++|++.|+.
T Consensus 143 ~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 143 ELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 99999999999987 45788876544433344455667899998864
No 242
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=93.85 E-value=3.1 Score=37.18 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
++..+++......++..+.++.. .|-..| ...++++.+++. ++..+.+.+....
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~gg-ep~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~--------------------- 85 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGG-EPLLYP---ELAELLRRLKKELPGFEISIETNGTL--------------------- 85 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCC-cCCccH---hHHHHHHHHHhhCCCceEEEEcCccc---------------------
Confidence 56778888888889888888542 111011 223444444433 3455544442211
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 306 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~ 306 (452)
...+.++...++|+..|.+.+...+......++ .....+++..+.++.+++.|+.+.+.+. .|.+... .+.+.
T Consensus 86 -~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~~---~~~~~ 158 (204)
T cd01335 86 -LTEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDED---EEDDL 158 (204)
T ss_pred -CCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCCh---hHHHH
Confidence 023578888899999999987554433333322 0112344555666888888988876665 3444332 45666
Q ss_pred HHHHHHHHCC-cC
Q 012949 307 YVAKELHDMG-CF 318 (452)
Q Consensus 307 ~~a~~l~~~G-ad 318 (452)
+.++.+.+.+ ++
T Consensus 159 ~~~~~l~~~~~~~ 171 (204)
T cd01335 159 EELELLAEFRSPD 171 (204)
T ss_pred HHHHHHHhhcCcc
Confidence 6666666665 44
No 243
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=93.71 E-value=2.8 Score=41.35 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHH--HHHHHHHHhCCCc
Q 012949 272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVV--PMLEAVMAVVPVE 348 (452)
Q Consensus 272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~--~li~~l~~~~p~~ 348 (452)
.+++++.+.|.+|. |+ .|..+.+++.+.++.+.+.|...|.|- =+.++=+|.+-. ..|..|++.+| .
T Consensus 104 ~lL~~~A~tgkPvI--lS-------TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~ 173 (241)
T PF03102_consen 104 PLLEYIAKTGKPVI--LS-------TGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-V 173 (241)
T ss_dssp HHHHHHHTT-S-EE--EE--------TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-S
T ss_pred HHHHHHHHhCCcEE--EE-------CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-C
Confidence 44566666777765 33 245667777777777756565444333 333444444433 34888999999 5
Q ss_pred cEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949 349 KLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA 381 (452)
Q Consensus 349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~ 381 (452)
++++=-|.. | +.-.++|+..||..| |.|+.
T Consensus 174 ~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 174 PVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp EEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred CEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence 899999987 4 455789999999998 56665
No 244
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=93.69 E-value=2.9 Score=43.43 Aligned_cols=85 Identities=21% Similarity=0.124 Sum_probs=60.4
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.+-+ +.+|- ....+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~-~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli--~GlPgq---t~~~~~~ 179 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPH-VLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLI--YGTPGE---SDDDWRA 179 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHH-HHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe--ccCCCC---CHHHHHH
Confidence 4577888889999999987 44443 33344442 2334455677889999998 776666 666765 4678888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
.++.+.+.|++.|.+
T Consensus 180 tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 180 SLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHhcCCCEEEe
Confidence 889999999988765
No 245
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.68 E-value=5.3 Score=40.11 Aligned_cols=200 Identities=17% Similarity=0.149 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+.-.++++.|.+.|++.|=+.-.... .+.+. .+|-.+.++ +..+-++++++- .. . +..+
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~l~~~~~~~~~~~~pvi~g-v~--------~--~t~~ 82 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGE--FFSLT-PDEYAQVVRAAVEETAGRVPVLAG-AG--------Y--GTAT 82 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcC--cccCC-HHHHHHHHHHHHHHhCCCCCEEEe-cC--------C--CHHH
Confidence 478999999999999999999877532221 12232 233333333 222223333321 10 0 0111
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 300 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~ 300 (452)
..+-.+.|.++|++.+.+..+. + +..+.++.++-+.++.+. .++++..|= .+ ....
T Consensus 83 --------~i~~a~~a~~~Gad~v~~~pP~---y----~~~~~~~i~~~f~~v~~~---~~~pi~lYn-----~~-g~~l 138 (289)
T cd00951 83 --------AIAYAQAAEKAGADGILLLPPY---L----TEAPQEGLYAHVEAVCKS---TDLGVIVYN-----RA-NAVL 138 (289)
T ss_pred --------HHHHHHHHHHhCCCEEEECCCC---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEe-----CC-CCCC
Confidence 1235677888999999885542 1 223555566655555443 467776443 11 2235
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 301 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
+++.+.+++ +.-...+.++||.| ...++.++++ ..++ .+.+-.-. +..=...+.++.+|++.. +
T Consensus 139 ~~~~l~~L~----~~~pnivgiKds~~--d~~~~~~~~~----~~~~-~~~v~~G~--~~~d~~~~~~l~~Ga~G~---i 202 (289)
T cd00951 139 TADSLARLA----ERCPNLVGFKDGVG--DIELMRRIVA----KLGD-RLLYLGGL--PTAEVFALAYLAMGVPTY---S 202 (289)
T ss_pred CHHHHHHHH----hcCCCEEEEEeCCC--CHHHHHHHHH----hcCC-CeEEEeCC--CcchHhHHHHHHCCCCEE---E
Confidence 677666655 31247899999977 4566665543 3343 34443222 112234567788897643 4
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 381 AGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 381 ~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
.| .+|.--|.++...+.
T Consensus 203 s~----------~~n~~P~~~~~l~~~ 219 (289)
T cd00951 203 SA----------VFNFVPEIALAFYAA 219 (289)
T ss_pred ec----------hhhhhHHHHHHHHHH
Confidence 43 345656666655543
No 246
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.66 E-value=4.6 Score=40.45 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCC--Cccccc--CCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccc
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSP--KWVPQL--ADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~--~~~p~~--~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
+.+.--..-++.++++||+.|-+|..... ...|.. -+.++++...+.+. +++.+.++-.+. +.+|+. ++
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmP-----f~sy~~-~e 92 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLP-----FMSYAT-PE 92 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCC-----cCCCCC-HH
Confidence 33333455688999999999999953211 001110 24567777666543 233333343333 334543 33
Q ss_pred hhhhhhhhccHHhHHHHH-HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e
Q 012949 220 SVISSNLWVYLQGFEAAI-AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V 292 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~-~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~ 292 (452)
+.++ ...+.+ ++|++-|.|-.. ..+.+.++.+.+.|++|.+.|-.+ .
T Consensus 93 ~a~~--------na~rl~~eaGa~aVkiEgg------------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ 146 (263)
T TIGR00222 93 QALK--------NAARVMQETGANAVKLEGG------------------EWLVETVQMLTERGVPVVGHLGLTPQSVNIL 146 (263)
T ss_pred HHHH--------HHHHHHHHhCCeEEEEcCc------------------HhHHHHHHHHHHCCCCEEEecCCCceeEeec
Confidence 3333 233334 489999998764 112355688888999987333211 1
Q ss_pred c-CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949 293 G-CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 293 g-~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~ 347 (452)
| .-.-++++ .+.+.+-++++.++||+.|.|.= .|. ++.+.+.++++.
T Consensus 147 ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~-----vp~---~~a~~It~~l~i 196 (263)
T TIGR00222 147 GGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLEC-----VPV---ELAAKITEALAI 196 (263)
T ss_pred CCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcC-----CcH---HHHHHHHHhCCC
Confidence 1 11123332 34677778889999999999964 453 556666666653
No 247
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=93.63 E-value=0.3 Score=47.53 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHH--HHHHHHHHHhCCCccEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v--~~li~~l~~~~p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~V 376 (452)
.|+..+.+.++.+.+.|+|.+-+==+-|...|.-. .+.++.+++..|..++.+|.| +|....+ -...++||++|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCCEE
Confidence 46788899999999999986554333377777632 467888888777888999999 4433322 45668899988
Q ss_pred eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
||-+ | ++...++..+..++.+|..
T Consensus 93 --tvH~--e-------a~~~~~~~~l~~ik~~G~~ 116 (228)
T PTZ00170 93 --TFHI--E-------ATEDDPKAVARKIREAGMK 116 (228)
T ss_pred --EEec--c-------CCchHHHHHHHHHHHCCCe
Confidence 4442 2 2222266777777765543
No 248
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.61 E-value=2.6 Score=42.74 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=122.1
Q ss_pred HHHHHHCCCCEEEEecCC-C-CCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 154 IRRLVSSGLPVVEATSFV-S-PKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~-s-~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
++.+.++|++.|=+++.. + ...+|- +-+.+++++.++++.+ +.+++++..- .||+... ++.+
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d-------~GyG~~~-~v~~----- 94 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID-------TGFGNAV-NVHY----- 94 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCCcH-HHHH-----
Confidence 566788899999998641 1 122332 2356788888887644 4455554322 3566555 3322
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhh-cC----CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CCCC
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSN-IN----CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIP 301 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~----~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r~d 301 (452)
.+++..++|+.-|+|-+...+-+.-+. -+ .+.++..++++.+.+. + .+..... +..+ |+ ....
T Consensus 95 ---tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~I-~ART----Da~~~~~g 164 (290)
T TIGR02321 95 ---VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFVV-IARV----EALIAGLG 164 (290)
T ss_pred ---HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEEE-EEEe----ccccccCC
Confidence 688889999999999987655321111 01 3678888887555433 2 3333221 1111 11 1123
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEEeecc
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSV 380 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~VD~Sv 380 (452)
.+...+=++...++|||.|.+.= +.-+|+++..+++.+.. | +++-+..=.+..+. +..++ ++| +.+|-...
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~--~~~~~~ei~~~~~~~~~--p-~pv~~~~~~~p~~~-~~~l~--~lg~~~~v~~g~ 236 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHS--RQKTPDEILAFVKSWPG--K-VPLVLVPTAYPQLT-EADIA--ALSKVGIVIYGN 236 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC--CCCCHHHHHHHHHhcCC--C-CCeEEecCCCCCCC-HHHHH--HhcCCcEEEECh
Confidence 46666668888999999999832 34678888887776532 2 23433220111111 22333 455 55533322
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 381 AGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 381 ~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
..+ ++-..++++.+..++..|
T Consensus 237 ~~~--------~aa~~a~~~~~~~i~~~g 257 (290)
T TIGR02321 237 HAI--------RAAVGAVREVFARIRRDG 257 (290)
T ss_pred HHH--------HHHHHHHHHHHHHHHHcC
Confidence 222 556677777777777543
No 249
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=93.58 E-value=0.38 Score=47.54 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=97.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d~e~l~~~a 309 (452)
+|+-.....-+|.+-+....+-++-+ +.+++-++.++++|+.|. .|.- .+-.+....+.++.
T Consensus 28 ~dlLe~ag~yID~~K~g~Gt~~l~~~-----------~~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl 90 (244)
T PF02679_consen 28 EDLLESAGDYIDFLKFGWGTSALYPE-----------EILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYL 90 (244)
T ss_dssp HHHHHHHGGG-SEEEE-TTGGGGSTC-----------HHHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHH
T ss_pred HHHHHHhhhhccEEEecCceeeecCH-----------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHH
Confidence 45555566779999998877765432 345688899999998875 2210 01112245677788
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CCCccEEEEeCC-------CcCcHHHHHHHHHHcCCCEE--eec
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD-------TYGQSLPNILISLQMGISTV--DCS 379 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p~~~l~vH~Hn-------d~GlA~ANaLaAl~aGa~~V--D~S 379 (452)
+.+.++|.+.|-+.|.+--+.++.-.++|+.++++ +. +.-++.-.+ |...-+..+...++|||+.| ++-
T Consensus 91 ~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 91 EECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp HHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred HHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 99999999999999999999999999999999876 32 233454443 35677888999999999965 444
Q ss_pred cc---CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 380 VA---GLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 380 v~---GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
=. |+=. ..|+.-.+.+-..+..++
T Consensus 170 EsG~~Gi~~------~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 170 ESGKGGIYD------NDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp TT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred ccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence 22 5555 689999998888887544
No 250
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.57 E-value=3.5 Score=42.52 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccc
Q 012949 147 TGVKVELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 147 ~~~k~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
+.--..-++.++++||+.|-+|... .+.-.| -+.++++...+.+. ++..+.++..+. +..|...++
T Consensus 41 TAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~--Vtld~mi~H~~aV~Rga~~a~vVaDmP-----fgSY~~s~e 113 (332)
T PLN02424 41 TAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLP--ITLDEMLVHCRAVARGANRPLLVGDLP-----FGSYESSTD 113 (332)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCC--cCHHHHHHHHHHHhccCCCCEEEeCCC-----CCCCCCCHH
Confidence 3333566889999999999999532 111111 24566777666542 344444443333 223544444
Q ss_pred hhhhhhhhccHHhHHHH-HHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e
Q 012949 220 SVISSNLWVYLQGFEAA-IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V 292 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a-~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~ 292 (452)
+.++ ...++ .++|++-|.+--.. ....++|+...+.|++|.+.|-.. +
T Consensus 114 ~av~--------nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~l 168 (332)
T PLN02424 114 QAVE--------SAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVL 168 (332)
T ss_pred HHHH--------HHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCCEEEeecccceeehhh
Confidence 3333 23344 57899999987542 112355666668899998655432 1
Q ss_pred c-CCCCCCC--CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949 293 G-CPVEGAI--PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 293 g-~p~~~r~--d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p 346 (452)
| .-.-++. ..+.+.+-++++.++||+.|.|.= .|..+ .+.+.+.++
T Consensus 169 GGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~-----Vp~~l---a~~It~~l~ 217 (332)
T PLN02424 169 GGFRPQGRTAESAVKVVETALALQEAGCFAVVLEC-----VPAPV---AAAITSALQ 217 (332)
T ss_pred cCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC-----CcHHH---HHHHHHhCC
Confidence 1 1112232 124677788889999999999954 66664 444455554
No 251
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=93.57 E-value=2.2 Score=41.61 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=74.2
Q ss_pred HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--------CCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV--------LSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~--------~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
++.....|.|.+..+....+ ...+.+++.+.+.+..+.+++ .+..+.+.| .+-.+.+.
T Consensus 4 i~~q~~l~~Di~~~lD~~~~------~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~l~gvI--------qGg~~~~l 69 (238)
T PF01702_consen 4 IEIQEALGPDIAMALDDCTP------YDASRKRAEKSVERTLRWLKECLEEHEEDKKQSLFGVI--------QGGDDKDL 69 (238)
T ss_dssp HHHHHHHT-SEEE-------------TT--HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE----------TT-HHH
T ss_pred HHHHHHHCCCEEEECCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhccCCCcceeeee--------CCCCCHHH
Confidence 33444568886555543332 223344444444444444332 233333322 34455666
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcCCCEEeecccC
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~VD~Sv~G 382 (452)
-.+.++.+.+.+.+.+.|.-........+..++|+.+.+.+|. ..-.|. +|. ...+.+.++..|+|.+|++..-
T Consensus 70 R~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~-~~pr~l---~G~~~P~~i~~~v~~GvD~fDs~~p~ 144 (238)
T PF01702_consen 70 RRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP-DKPRYL---LGVGTPEEILEAVYLGVDLFDSSYPT 144 (238)
T ss_dssp HHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T-TS-EEE---TTB-SHHHHHHHHHTT--EEEESHHH
T ss_pred HHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc-ccceec---cCCCCHHHHHHHHHcCCcEEcchHHH
Confidence 6778888888779999998766666789999999999998874 244555 333 5789999999999999998753
No 252
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.57 E-value=2.7 Score=45.15 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCc--ccccCCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKW--VPQLADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~--~p~~~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
..+.++.++.++.|.+.|++.|.+.... .... .|...+..++++.+....+. ++.....+..
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~-------------- 248 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA-------------- 248 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--------------
Confidence 4689999999999999999988876421 1100 11111244555555544332 2221121111
Q ss_pred hhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949 220 SVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC 294 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~ 294 (452)
. ...+-++...+. |...+++.+ +.|+--++. +|+. ...+.+.++++.+++. |+.+.++++ +|.
T Consensus 249 -~------i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~ 316 (459)
T PRK14338 249 -W------MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGH 316 (459)
T ss_pred -h------cCHHHHHHHhcccccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EEC
Confidence 0 112345555554 467777765 555543332 3322 2345555677778877 677776666 667
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 317 PgET---~ed~~~ti~~l~~l~~~~v~ 340 (459)
T PRK14338 317 PGET---EEQFQRTYDLLEEIRFDKVH 340 (459)
T ss_pred CCCC---HHHHHHHHHHHHHcCCCEeE
Confidence 7764 67788888888888887664
No 253
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.53 E-value=1.2 Score=44.41 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=85.1
Q ss_pred hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV 308 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~e~l~~~ 308 (452)
.+|.|+..|++-|.+.+.. |+ +-.+.++++.++++.|.++|+++.. .+|--|.-+.. ..+++.+...
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~a 171 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYA 171 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHH
Confidence 7888999999966554311 11 1247899999999999999998752 34434433322 3678889999
Q ss_pred HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC---CCcCcHHHHHHHHHHcCCCEEe
Q 012949 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H---nd~GlA~ANaLaAl~aGa~~VD 377 (452)
++...++|||.|-..=| ..|+.+++.++. .| +||-+-.= ++.--++.-.-+|+++|+..+.
T Consensus 172 aRlaaelGADIiK~~yt---g~~e~F~~vv~~----~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~ 235 (265)
T COG1830 172 ARLAAELGADIIKTKYT---GDPESFRRVVAA----CG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA 235 (265)
T ss_pred HHHHHHhcCCeEeecCC---CChHHHHHHHHh----CC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence 99999999998876332 234555555544 34 34444322 2445677888889999887554
No 254
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.46 E-value=8.7 Score=38.02 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.+.-.++++.|.+.|++.|-+...... .+.+.+ ..++++.+.+..+-++.+++-... ....+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~----------~~~~~- 80 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTLTDEERKEVIEAVVEAVAGRVPVIAGVGA----------NSTRE- 80 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEecCC----------ccHHH-
Confidence 589999999999999999999887533221 122322 233333333322223333221000 00001
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GA 299 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r 299 (452)
..+-.+.|.+.|++.|.+..+. + +..+.++.++-+..+++. .++++..|- .|.. ..
T Consensus 81 -------~i~~a~~a~~~Gad~v~v~pP~---y----~~~~~~~~~~~~~~ia~~---~~~pi~iYn-----~P~~tg~~ 138 (281)
T cd00408 81 -------AIELARHAEEAGADGVLVVPPY---Y----NKPSQEGIVAHFKAVADA---SDLPVILYN-----IPGRTGVD 138 (281)
T ss_pred -------HHHHHHHHHHcCCCEEEECCCc---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CccccCCC
Confidence 1234567788999999986542 1 224556666666555443 467775432 3432 34
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
.+++.+.++++ ....+.++||.+ .+.++.++++. .+. .+.+-.=+| ...+.++..|++ ++
T Consensus 139 l~~~~~~~L~~-----~~~v~giK~s~~--d~~~~~~~~~~----~~~-~~~v~~G~d-----~~~~~~l~~G~~---G~ 198 (281)
T cd00408 139 LSPETIARLAE-----HPNIVGIKDSSG--DLDRLTRLIAL----LGP-DFAVLSGDD-----DLLLPALALGAD---GA 198 (281)
T ss_pred CCHHHHHHHhc-----CCCEEEEEeCCC--CHHHHHHHHHh----cCC-CeEEEEcch-----HHHHHHHHcCCC---EE
Confidence 56776666653 357999999973 56666666543 333 344433222 466678889974 45
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 380 VAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 380 v~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
+.|+ +|.--|.++...+.
T Consensus 199 i~~~----------~n~~p~~~~~~~~~ 216 (281)
T cd00408 199 ISGA----------ANVAPKLAVALYEA 216 (281)
T ss_pred EehH----------HhhCHHHHHHHHHH
Confidence 5543 35555666555543
No 255
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=93.43 E-value=8.6 Score=37.84 Aligned_cols=206 Identities=19% Similarity=0.154 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW 227 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~ 227 (452)
.+-+++++.+.+.|++.+=+.-..... .. -....+++..+.+..+..+.+ .-+.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~-~~-~~~n~~~i~~i~~~~~~pv~~-~GGi~---------------------- 84 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASS-EG-RTTMIDVVERTAETVFIPLTV-GGGIK---------------------- 84 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccc-cc-ChhhHHHHHHHHHhcCCCEEE-ECCCC----------------------
Confidence 466889999999999988886332111 00 011123344443322333221 12222
Q ss_pred ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCC----------
Q 012949 228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPV---------- 296 (452)
Q Consensus 228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~---------- 296 (452)
..++++.++..|++.|.+-... +++...+-+.++..| -++.+.|-. ...+.
T Consensus 85 -s~~d~~~~~~~Ga~~vivgt~~----------------~~~p~~~~~~~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i 146 (254)
T TIGR00735 85 -SIEDVDKLLRAGADKVSINTAA----------------VKNPELIYELADRFGSQCIVVAIDA-KRVYVNSYCWYEVYI 146 (254)
T ss_pred -CHHHHHHHHHcCCCEEEEChhH----------------hhChHHHHHHHHHcCCCCEEEEEEe-ccCCCCCCccEEEEE
Confidence 2358999999999998665321 111111222334445 344444431 11110
Q ss_pred -C-CCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHc
Q 012949 297 -E-GAIPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM 371 (452)
Q Consensus 297 -~-~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~a 371 (452)
. .........++++.+.++|++.|.+ -|..|.+.... .++++.+++..+ +|+-... |... .-...++..
T Consensus 147 ~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~G----Gi~s~~di~~~~~~ 220 (254)
T TIGR00735 147 YGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASG----GAGKPEHFYEAFTK 220 (254)
T ss_pred eCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeC----CCCCHHHHHHHHHc
Confidence 0 0123456678889999999999988 55555443333 456788877764 3555543 2222 333455566
Q ss_pred C-CCEE-eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949 372 G-ISTV-DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET 412 (452)
Q Consensus 372 G-a~~V-D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t 412 (452)
| |+.| -++.. -.|..+++++...|+..|+.+
T Consensus 221 g~~dgv~~g~a~----------~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 221 GKADAALAASVF----------HYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCcceeeEhHHH----------hCCCCCHHHHHHHHHHCCCcc
Confidence 6 7764 22332 235578999999998887753
No 256
>PRK08508 biotin synthase; Provisional
Probab=93.39 E-value=0.58 Score=46.87 Aligned_cols=135 Identities=14% Similarity=0.027 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 340 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~ 340 (452)
.|.|++++.+ +++++.|..- ..+.. .| +.....+.+++.++++.+.+.+.+ +.++-+.|.++++.+.+|-++
T Consensus 40 ~s~eeI~~~a----~~a~~~g~~~-~~lv~-sg-~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQEA----KMAKANGALG-FCLVT-SG-RGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred CCHHHHHHHH----HHHHHCCCCE-EEEEe-cc-CCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 4666666544 6666677742 22211 11 111123568888999988876543 334446899887776666443
Q ss_pred HHHhCCC-c----cEE--EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 341 VMAVVPV-E----KLA--VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 341 l~~~~p~-~----~l~--vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
=.+.++. . .+- ++.-.++.--+.....|-++|...-.+-+.|+|| . .-...+.+..|+.++.+
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH 181 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence 1122221 0 010 1111223334445555778998888888999998 2 34555566666665544
No 257
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.31 E-value=2.5 Score=42.12 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=50.7
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++.+.+.|++.|.+-++.-.. +.+.+..+..+.+.++++.+|+. ++.|.+-+.. -.+.+.+.++++
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~ 183 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAK 183 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHH
Confidence 5667777899988876543221 11111112234445556666654 5666543331 235678889999
Q ss_pred HHHHCCcCEEEEcCCc
Q 012949 311 ELHDMGCFEISLGDTI 326 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~ 326 (452)
.+.++|+|.|.+..+.
T Consensus 184 ~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 184 AAERAGADGLTAINTI 199 (289)
T ss_pred HHHHcCCCEEEEEccc
Confidence 9999999999987654
No 258
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.30 E-value=7.1 Score=36.49 Aligned_cols=173 Identities=19% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
++...-.+.++.+.+.|++.|+++..-.+ +.|...-..+..+.+++..+..+.+ ++-+.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~------------------ 69 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENP------------------ 69 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCH------------------
Confidence 56666778899999999999999642111 1111111113444555432222222 22111
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
.+.++.+.++|++.|.+....++ ...+.++.+++.|+.+...+. +. ++.
T Consensus 70 -------~~~~~~~~~~g~dgv~vh~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~ 118 (211)
T cd00429 70 -------ERYIEAFAKAGADIITFHAEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPV 118 (211)
T ss_pred -------HHHHHHHHHcCCCEEEECccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCH
Confidence 13678888999999877654332 223457888888987763221 11 123
Q ss_pred HHHHHHHHHHHHCCcCEEEEc----CCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949 303 SKVAYVAKELHDMGCFEISLG----DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS 374 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~----DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~ 374 (452)
+.+.++. + ++|.|.+- -+.|...+....+.++.+++..+ ..++.+ ..|.-..|.-.++++|++
T Consensus 119 ~~~~~~~----~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v----~GGI~~env~~~~~~gad 189 (211)
T cd00429 119 EVLEPYL----D-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV----DGGINLETIPLLAEAGAD 189 (211)
T ss_pred HHHHHHH----h-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCC
Confidence 3333332 2 26666441 22333445566677777776654 334544 347888899999999999
Q ss_pred EE
Q 012949 375 TV 376 (452)
Q Consensus 375 ~V 376 (452)
.|
T Consensus 190 ~i 191 (211)
T cd00429 190 VL 191 (211)
T ss_pred EE
Confidence 66
No 259
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.29 E-value=2.8 Score=43.61 Aligned_cols=85 Identities=7% Similarity=0.011 Sum_probs=59.7
Q ss_pred HHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.+.+.. ++... ..+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l-~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli--~GlPgq---t~~~~~~ 171 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELL-KKIGRT--HNEEDVYEAIANAKKAGFDNISIDLI--YALPGQ---TIEDFKE 171 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeee--cCCCCC---CHHHHHH
Confidence 357788889999999998744 44332 334442 2345666788999999987 555555 666765 4678888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
.++.+.+.+++.|.+
T Consensus 172 ~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 172 SLAKALALDIPHYSA 186 (377)
T ss_pred HHHHHHccCCCEEee
Confidence 888889999987755
No 260
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=93.25 E-value=6.5 Score=40.72 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=99.1
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-C--CCcEEEEEEeeecCCCCCC-CCHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L--SIPVRGYVSCVVGCPVEGA-IPPSKVA 306 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~--G~~V~~~l~~~~g~p~~~r-~d~e~l~ 306 (452)
+-++.+.+-|+..+-+..+....+...+-+.+.++.++.+.+.++.+++ . |+.++.-++. .| .+++...
T Consensus 74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~-------~R~~~~e~~~ 146 (345)
T cd01321 74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYAT-------LRNFNDSEIK 146 (345)
T ss_pred HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEe-------cCCCCHHHHH
Confidence 4567788889988888776543333334678999999999888777654 3 5565533332 22 3456555
Q ss_pred HHHHHHHHC---CcC-EEEEcCCcCC---C-cHHHHHHHHHHHHHhCCCccEEEEeCCCcC--cH-HHHHHHHHHcCCCE
Q 012949 307 YVAKELHDM---GCF-EISLGDTIGV---G-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QS-LPNILISLQMGIST 375 (452)
Q Consensus 307 ~~a~~l~~~---Gad-~I~L~DT~G~---~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--lA-~ANaLaAl~aGa~~ 375 (452)
+.++.+.++ ..+ .+.+ |-.|- . .|....+.++..++.-++.++.+|+=...+ .. ..|...|+..|+++
T Consensus 147 e~~~~a~~~~~~~~~~VvGi-dL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~R 225 (345)
T cd01321 147 ESMEQCLNLKKKFPDFIAGF-DLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKR 225 (345)
T ss_pred HHHHHHHHHHHhCCCeEEEE-ecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCc
Confidence 555555443 122 2222 44442 2 367777888888876444689999976653 32 34788888999999
Q ss_pred EeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 376 VDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 376 VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
|+=.+.=. .-++++..|+..++
T Consensus 226 IGHG~~~~-------------~dp~ll~~l~~~~I 247 (345)
T cd01321 226 IGHGFALP-------------KHPLLMDLVKKKNI 247 (345)
T ss_pred CccccccC-------------cCHHHHHHHHHcCC
Confidence 86555522 12566777765444
No 261
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=93.23 E-value=4.5 Score=41.97 Aligned_cols=86 Identities=7% Similarity=-0.025 Sum_probs=59.8
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.+-+..-+-.....+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI--~GlPgq---t~e~~~~t 175 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFL--YCLPIL---KLKDLDEV 175 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe--ecCCCC---CHHHHHHH
Confidence 457888889999999988743332333344442 2344556778999999987 776666 566654 46788888
Q ss_pred HHHHHHCCcCEEEE
Q 012949 309 AKELHDMGCFEISL 322 (452)
Q Consensus 309 a~~l~~~Gad~I~L 322 (452)
++.+.+.+++.|.+
T Consensus 176 l~~~~~l~p~~is~ 189 (353)
T PRK05904 176 FNFILKHKINHISF 189 (353)
T ss_pred HHHHHhcCCCEEEE
Confidence 88888899886644
No 262
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.19 E-value=3.5 Score=42.61 Aligned_cols=136 Identities=18% Similarity=0.083 Sum_probs=84.4
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~~ 297 (452)
+..++|+++|.|.|.|... .|+.. ...++|-|.++=.+.+.++++.+|+. |.+ |.+-++. .+.
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~----~D~ 216 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSM----LDL 216 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecc----ccc
Confidence 3556778899999998542 24433 23346778888888888888888874 544 3322331 121
Q ss_pred --CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---c-------H-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949 298 --GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---T-------P-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 364 (452)
Q Consensus 298 --~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~-------P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN 364 (452)
+..+++...++++.+.++|+|.|.+ |.|.. + | ....++.+.+++.++. ||..-.--+ ....
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~---~~~~ 290 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI-PVIASNRIN---TPEV 290 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCCC-CEEEcCCCC---CHHH
Confidence 2357888999999999999999988 33321 1 1 1134456777777653 454432211 2466
Q ss_pred HHHHHHcC-CCEE
Q 012949 365 ILISLQMG-ISTV 376 (452)
Q Consensus 365 aLaAl~aG-a~~V 376 (452)
+..+++.| +|.|
T Consensus 291 a~~~i~~g~~D~V 303 (353)
T cd02930 291 AERLLADGDADMV 303 (353)
T ss_pred HHHHHHCCCCChh
Confidence 77777776 5544
No 263
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.18 E-value=1.1 Score=46.56 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++++.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.... .++....+..++..+.++.+
T Consensus 5 ~~k~lL~~A~~~~yAVgA-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPA-----FN-----VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred cHHHHHHHHHHcCceEEE-----ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 356778899999987752 32 24678888999999999876 55554433 33344567888888888776
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc-------CCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA-------GLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~-------GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
.+|+.+|. |-|........|+++|.+ ++|+|-. .+-+ | .-|.+++.+.+.
T Consensus 75 ~VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~ 134 (347)
T PRK09196 75 HIPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEY---------NVDVTRKVVEMAHA 134 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 45777665 666778889999999998 7799987 4444 3 445666666663
No 264
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.17 E-value=1.1 Score=47.62 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 384 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG 384 (452)
..+.++.+.++|+|.|.| |+.. ..+..+.++|+.+++.+|+..|-+..=- -...+..++++|||.|-+ |+|
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~v---G~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKV---GIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEE---CCC
Confidence 456788899999999998 7776 4578899999999999997655444322 246778889999999984 555
Q ss_pred C
Q 012949 385 G 385 (452)
Q Consensus 385 e 385 (452)
.
T Consensus 225 ~ 225 (404)
T PRK06843 225 P 225 (404)
T ss_pred C
Confidence 4
No 265
>PRK14057 epimerase; Provisional
Probab=93.16 E-value=3.7 Score=40.90 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
+...-.+-++.|.+.|++.+=+-..- -.|+|.+.=..++++.++. +..+-+ ++-+.
T Consensus 30 D~~~L~~el~~l~~~g~d~lHiDVMD-G~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P------------------- 87 (254)
T PRK14057 30 QWIALHRYLQQLEALNQPLLHLDLMD-GQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQ------------------- 87 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccC-CccCCccccCHHHHHHhcc--CCCeeEEeeeCCH-------------------
Confidence 44555677888889999977663110 0134554322345666654 222222 22111
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-------EEEEEEeeecCCC
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-------VRGYVSCVVGCPV 296 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-------V~~~l~~~~g~p~ 296 (452)
...++..+++|++.|.+-.-+. ..+.++++++|++|.+ +.+.|.. +|.
T Consensus 88 ------~~~i~~~~~aGad~It~H~Ea~----------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAl---nP~ 142 (254)
T PRK14057 88 ------WTAAQACVKAGAHCITLQAEGD----------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISL---CPA 142 (254)
T ss_pred ------HHHHHHHHHhCCCEEEEeeccc----------------cCHHHHHHHHHHcCCCcccccccceeEEEE---CCC
Confidence 1367888899999888765322 2345677888999974 2333432 232
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
++.+.+.+++.. +|.|-+ +.-.|..--..+.+-|+.+++..+...+.+-.-=|=|.-..|+-...++|
T Consensus 143 ---Tp~e~i~~~l~~-----vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aG 214 (254)
T PRK14057 143 ---TPLDVIIPILSD-----VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQG 214 (254)
T ss_pred ---CCHHHHHHHHHh-----CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCC
Confidence 467777776653 343332 33445544455666667666654432222333347788889999999999
Q ss_pred CCEEee
Q 012949 373 ISTVDC 378 (452)
Q Consensus 373 a~~VD~ 378 (452)
|+.+=+
T Consensus 215 ad~~V~ 220 (254)
T PRK14057 215 IDRVVS 220 (254)
T ss_pred CCEEEE
Confidence 996644
No 266
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.06 E-value=1.7 Score=42.79 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=86.3
Q ss_pred HHHHHHHHCCCCEEEEecCCC--CCccccc--CCHHHHHHHHHhccC-Cc-eeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 152 ELIRRLVSSGLPVVEATSFVS--PKWVPQL--ADARDVMEAVRDLEG-AR-LPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~s--~~~~p~~--~D~e~v~~~i~~~~~-~~-l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
--++.++++|++.|=+|+... ....|.. -+.++++..++.+.. +. .++++. .. .+|...+.++++
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD-~~------~G~g~~~~~~~~-- 93 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVAD-LP------FGAYGAPTAAFE-- 93 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEe-CC------CCCCcCHHHHHH--
Confidence 457788899999999986421 1112221 245778887776543 22 233331 11 344544344433
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CCCCC
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CPVEG 298 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p~~~ 298 (452)
.+++..++|++-|+|-... +.+ +.++.+++.++.|.+.+-.. .| ...-+
T Consensus 94 ------~~~~l~~aGa~gv~iED~~--------------~~~----~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~ 149 (240)
T cd06556 94 ------LAKTFMRAGAAGVKIEGGE--------------WHI----ETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQY 149 (240)
T ss_pred ------HHHHHHHcCCcEEEEcCcH--------------HHH----HHHHHHHHcCCeEEEEeCCchhhhhccCCceeec
Confidence 6778888999999998752 222 34566677777664333210 00 00001
Q ss_pred C--CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHH
Q 012949 299 A--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLE 339 (452)
Q Consensus 299 r--~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~ 339 (452)
+ ...+...+-+++..++|||.|.+. +. .++.+.++.+
T Consensus 150 ~~~~~~~~ai~Ra~ay~~AGAd~i~~e---~~-~~e~~~~i~~ 188 (240)
T cd06556 150 RGDEAGEQLIADALAYAPAGADLIVME---CV-PVELAKQITE 188 (240)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEc---CC-CHHHHHHHHH
Confidence 1 123456666788889999999996 33 5555554444
No 267
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.04 E-value=3.9 Score=41.95 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=85.7
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~ 297 (452)
+..++|+++|.|.|.|-.. .|+. .....+|-+.++-.+.+.++++.+|+. | +.|.+-++..- ...
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~--~~~ 235 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD--WVE 235 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc--cCC
Confidence 3566778899999888542 1222 223346778888888888999888874 3 44443343210 012
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC--------cHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG--------TPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILIS 368 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~--------~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaA 368 (452)
...+++...++++.+.++|+|.|.+. .|.. .|....++++.+++.++. +|.. -.-. ....+..+
T Consensus 236 ~g~~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G~i~----t~~~a~~~ 308 (336)
T cd02932 236 GGWDLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAGI-PVIAVGLIT----DPEQAEAI 308 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCCC-CEEEeCCCC----CHHHHHHH
Confidence 34578889999999999999999873 1211 122234667778887753 4432 2111 24567778
Q ss_pred HHcC-CCEEe
Q 012949 369 LQMG-ISTVD 377 (452)
Q Consensus 369 l~aG-a~~VD 377 (452)
++.| ||.|-
T Consensus 309 l~~g~aD~V~ 318 (336)
T cd02932 309 LESGRADLVA 318 (336)
T ss_pred HHcCCCCeeh
Confidence 8888 66653
No 268
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=92.96 E-value=3.7 Score=42.79 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=85.7
Q ss_pred HhHHHHHHcCCCEEEEEe--------cCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEEee--ecCCC
Q 012949 231 QGFEAAIAAGAKEVAIFA--------SASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCV--VGCPV 296 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~--------s~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G~~-V~~~l~~~--~g~p~ 296 (452)
+..++|.++|.|.|.|-. ..|+..++. .+|-|.|+=.+-+.++++..|+. |-. |..-|+.. +.. .
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~ 241 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-V 241 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-C
Confidence 356778889999998853 233432222 36778888888888888888874 322 32223211 000 1
Q ss_pred CCCCCHHH-HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949 297 EGAIPPSK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS 374 (452)
Q Consensus 297 ~~r~d~e~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~ 374 (452)
.+-.+++. ..++++.+.+.|+|.|.+...--...+.-...+.+.+|+.++. +|.+-.-.| ...+..+++.| +|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D 316 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLID 316 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCC
Confidence 11246666 6899999999999999886421000111123456778888775 455544333 67788999998 66
Q ss_pred EE
Q 012949 375 TV 376 (452)
Q Consensus 375 ~V 376 (452)
.|
T Consensus 317 ~V 318 (362)
T PRK10605 317 AV 318 (362)
T ss_pred EE
Confidence 54
No 269
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.95 E-value=2.9 Score=41.63 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc----CCcC----CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC--cHHHHHHHHHH
Q 012949 301 PPSKVAYVAKELHDMGCFEISLG----DTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QSLPNILISLQ 370 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~----DT~G----~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--lA~ANaLaAl~ 370 (452)
+++.+.+.++.+.++|+|.|.|- .+.+ .-.|..+.++++.+++.+ +.+|.+-.=-... -...-+.++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999977762 1111 236889999999999986 3466665443333 23445556678
Q ss_pred cCCCEEeec
Q 012949 371 MGISTVDCS 379 (452)
Q Consensus 371 aGa~~VD~S 379 (452)
+||+.|.++
T Consensus 188 ~Gad~i~~~ 196 (289)
T cd02810 188 AGADGLTAI 196 (289)
T ss_pred cCCCEEEEE
Confidence 999988764
No 270
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.91 E-value=1.2 Score=44.98 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.++. .|.+.- +..+...+.+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~ 74 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPA-----FN-----IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC
Confidence 345777899999987752 21 23578888899999998876 444433 2223344667888888888775
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
. |+.+|. |-|.-......|+++|.+ ++|+|-..+-+ | .-|-+++.+.+.
T Consensus 75 V-PValHL--DH~~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~ 126 (284)
T PRK12737 75 I-PLALHL--DHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE---------NIAIVKEVVEFCHR 126 (284)
T ss_pred C-CEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 3 666654 677778999999999998 77999887665 4 445566666663
No 271
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.90 E-value=2.3 Score=43.68 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---c-----CCcCCCcHH
Q 012949 262 SIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---G-----DTIGVGTPG 332 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~ 332 (452)
..++.++.+. .++ +.+..+.+.|.. .+++.+.++++.+.++|+|.|.| + +..|...+.
T Consensus 85 g~d~~~~~i~----~~~~~~~~pvi~sI~g---------~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~ 151 (334)
T PRK07565 85 GPEEYLELIR----RAKEAVDIPVIASLNG---------SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQ 151 (334)
T ss_pred CHHHHHHHHH----HHHHhcCCcEEEEecc---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHH
Confidence 3445554443 333 335666655531 34678889999999999998888 2 334555556
Q ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 333 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 333 ~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
.+.++++.+++..+ +||.+..=-+......-+.++.++||+.|..+
T Consensus 152 ~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 152 RYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 78899999998764 46777754443323334445567999988653
No 272
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.90 E-value=4.6 Score=39.19 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=96.5
Q ss_pred HHHHHHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949 150 KVELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV 228 (452)
Q Consensus 150 k~~i~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~ 228 (452)
-.+-|..|.++|++.|-.|--+.. -..|.. .+++...+.+.. ..++.++...
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~--d~ei~~~ie~~~--~v~vvTts~A----------------------- 108 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSLIGGPGY--DKEIAQRIEEAK--GVPVVTTSTA----------------------- 108 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceeeecCCch--hHHHHHHHHhcc--CCceeechHH-----------------------
Confidence 345577889999999998732211 011211 345666666544 3455555432
Q ss_pred cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKV 305 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l 305 (452)
-++.....|+.+|.+..+-.+ +--+..+++..+.|++|.=..+ .|-++. +|.+|..+
T Consensus 109 ---vv~aL~al~a~ri~vlTPY~~---------------evn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~ 168 (238)
T COG3473 109 ---VVEALNALGAQRISVLTPYID---------------EVNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAV 168 (238)
T ss_pred ---HHHHHHhhCcceEEEeccchh---------------hhhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHH
Confidence 566777789999999987544 2223556788889999753333 233442 68899999
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p 346 (452)
.++++++..-++|.|.+. .+-.+..+.|..+-+..+
T Consensus 169 y~lAk~~~~~~~DaiFiS-----CTnlRt~eii~~lE~~~G 204 (238)
T COG3473 169 YRLAKEVFTPDADAIFIS-----CTNLRTFEIIEKLERDTG 204 (238)
T ss_pred HHHHHHhcCCCCCeEEEE-----eeccccHHHHHHHHHHhC
Confidence 999999998899999886 455667777887777654
No 273
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=92.89 E-value=6.9 Score=41.33 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcccccCCH---HHHHHHHHhc-c--CCceeEEecchhhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADA---RDVMEAVRDL-E--GARLPVLTPNLKVILQRSILFQQ 216 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~-~--~~~l~~l~~~~~~~i~r~~~~~~ 216 (452)
.++.+.-.++++.+.+. |++.+.+.+... .|-+... .++++.+++. . ++.+...+-+..
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG---EPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~l----------- 112 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGG---ETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTL----------- 112 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEcc---ccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEe-----------
Confidence 47888888888887764 778888876432 2444321 2233443321 1 223333232221
Q ss_pred ccchhhhhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949 217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295 (452)
Q Consensus 217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p 295 (452)
...+-++...+.++ .|.|.+ +..+.|-.......-..+++++.+.++.+++.|+++. +.+++
T Consensus 113 -----------l~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv--- 175 (412)
T PRK13745 113 -----------LTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV--- 175 (412)
T ss_pred -----------CCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE---
Confidence 11234566677786 777765 3333443222111112357777777888889998765 34333
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
++.+.+.+.++++.+.+.|++.+.+
T Consensus 176 --~~~n~~~~~e~~~~~~~lg~~~~~~ 200 (412)
T PRK13745 176 --NDFNADYPLDFYHFFKELDCHYIQF 200 (412)
T ss_pred --cCCccccHHHHHHHHHHcCCCeEEE
Confidence 3444567777888888999987765
No 274
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.89 E-value=0.86 Score=43.46 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE---Eecchhhhhhhhhhhhhccchh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV---LTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~---l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.+.++.+++++.+.+. +..+|+|.+--.. ...++++.+++.....+-. .+++..
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~------~G~~~v~~ir~~~~i~~D~k~~di~~~~---------------- 69 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLA------SGLGIIEELKRYAPVIADLKVADIPNTN---------------- 69 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHh------hCHHHHHHHHhcCCEEEEeeccccHHHH----------------
Confidence 4567777777777554 5799999642111 1124566666543111000 011110
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
...++.+.++|+|.|.+..-... +.+.++++.+++.|.++.+.+... .+.....-
T Consensus 70 --------~~~~~~~~~~gad~vtvh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~ 124 (215)
T PRK13813 70 --------RLICEAVFEAGAWGIIVHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFI 124 (215)
T ss_pred --------HHHHHHHHhCCCCEEEEcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCH
Confidence 01346788899998887764322 234567888999999886544321 11111111
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH--HHHHHHHcCCCEEee
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP--NILISLQMGISTVDC 378 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A--NaLaAl~aGa~~VD~ 378 (452)
.+++..++....+.|.+...+.- ...+.++.+++..+. .+.+ =|-|.... |.-.++++|++.+-.
T Consensus 125 ~~~~~~v~~m~~e~G~~g~~~~~--------~~~~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 125 QPHADKLAKLAQEAGAFGVVAPA--------TRPERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred HHHHHHHHHHHHHhCCCeEEECC--------CcchhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 24566677778888987664321 112344566665543 1111 23344433 478899999997633
No 275
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=92.88 E-value=0.7 Score=47.58 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccEEEEe---------CCCcCcHHHHHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILIS 368 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l~vH~---------Hnd~GlA~ANaLaA 368 (452)
+.++|.+.+.++.+.+.|+.+|.|.+- .-...++.+.++++.+++.+|. +.+|+ |.+.|+-....+..
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 358999999999999999999999832 2234677889999999998886 44554 66888888887777
Q ss_pred H-HcCCCEEe
Q 012949 369 L-QMGISTVD 377 (452)
Q Consensus 369 l-~aGa~~VD 377 (452)
+ +||++.+.
T Consensus 147 LkeAGl~~i~ 156 (343)
T TIGR03551 147 LKEAGLDSMP 156 (343)
T ss_pred HHHhCccccc
Confidence 7 58999886
No 276
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.86 E-value=3.2 Score=40.98 Aligned_cols=236 Identities=16% Similarity=0.160 Sum_probs=123.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhcc
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
...++=.+|+.+++ ++|||.||+...-+-+-.--+. +.++....++.+ .+++++.+|-... |=+-|+.-.
T Consensus 15 p~~~sW~erl~~AK---~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaH----RRfPfGS~D 87 (287)
T COG3623 15 PNGFSWLERLALAK---ELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAH----RRFPFGSKD 87 (287)
T ss_pred cCCCCHHHHHHHHH---HcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhh----ccCCCCCCC
Confidence 34578888888876 5799999998653322111111 234455555543 4555555441111 111122212
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 298 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~ 298 (452)
+...++..-+..+.++.|.+.|++.|.+.-- |++-+..-.-|++.-++.++.+++.|.+.++...+.||.. |+
T Consensus 88 ~~~r~~aleiM~KaI~LA~dLGIRtIQLAGY--DVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt---pf-- 160 (287)
T COG3623 88 EATRQQALEIMEKAIQLAQDLGIRTIQLAGY--DVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDT---PF-- 160 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceeEeeccc--eeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc---HH--
Confidence 2222222223446888899999999887421 2221211223566677888888999988887665555531 11
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
..+.+....+.+.+. .+--..++| +|-++... .++...+.--.+- ...+|+-||+-.- .-..|. .=|
T Consensus 161 m~sIsk~~~~~~~I~--sP~f~vYPD-iGNlsaw~-ndv~~El~lG~~~-I~aiHlKDTy~vt------e~~~Gq-Frd- 227 (287)
T COG3623 161 MNSISKWLKYDKYIN--SPWFTVYPD-IGNLSAWN-NDVQSELQLGIDK-IVAIHLKDTYAVT------ETSPGQ-FRD- 227 (287)
T ss_pred HHHHHHHHHHHHHhC--CCcEEecCC-cccHhhhh-hhHHHHHHcCcCc-eEEEEeccccccc------ccCCCc-ccc-
Confidence 112333333333332 133444556 45555433 2333444332333 4789999997421 001110 011
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949 379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV 414 (452)
Q Consensus 379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i 414 (452)
..+| .|++.-+++...|+.+++...+
T Consensus 228 --vpfG--------eG~Vdf~~~f~~lk~~ny~gpf 253 (287)
T COG3623 228 --VPFG--------EGCVDFEECFKTLKQLNYRGPF 253 (287)
T ss_pred --CCcC--------CcchhHHHHHHHHHHhCCCCce
Confidence 1233 4899999999999987765443
No 277
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=92.82 E-value=9.3 Score=36.58 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
..+-+++++.+.+.|++.+-+--...- ....-.+ .+....+++..+..+.+ .-+.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~-~~~i~~i~~~~~~pv~~-~GgI~--------------------- 83 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPVN-LELIEEIVKAVGIPVQV-GGGIR--------------------- 83 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-ccCCCCC-HHHHHHHHHhcCCCEEE-eCCcC---------------------
Confidence 457788999999999999888522110 0000012 23444444332333322 11111
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCC--CCC-CCCH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCP--VEG-AIPP 302 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p--~~~-r~d~ 302 (452)
..++++.+++.|++.|.+-... ++....+.+.+++.|. .+...+-.-.+.. ... ..+.
T Consensus 84 --~~e~~~~~~~~Gad~vvigs~~----------------l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~ 145 (234)
T cd04732 84 --SLEDIERLLDLGVSRVIIGTAA----------------VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSE 145 (234)
T ss_pred --CHHHHHHHHHcCCCEEEECchH----------------HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecC
Confidence 2358888999999988654321 1211222333445554 3443332110000 000 1123
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-HHHHHHHcCCCEEe
Q 012949 303 SKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTVD 377 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-NaLaAl~aGa~~VD 377 (452)
....++++.+.+.|++.|.+-|. .|.... .-.++++.+++..+ +|+-.-+ |.... ....++..||+.|=
T Consensus 146 ~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~-ipvi~~G----Gi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 146 VSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATG-IPVIASG----GVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcC-CCEEEec----CCCCHHHHHHHHHCCCCEEE
Confidence 34567888889999998888765 444444 22567788877664 3555533 22222 34555667887553
No 278
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=92.81 E-value=4.3 Score=42.29 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=60.1
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.+-+..-+-.....+|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+-
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~--~~~~~~~~ai~~~~~~g~~~v~~Dli--~GlPgq---t~~~~~~~ 175 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRT--HSSSKAIDAVQECSEHGFSNLSIDLI--YGLPTQ---SLSDFIVD 175 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 357888889999999887743332333344432 1234455677899999996 766665 676765 57888888
Q ss_pred HHHHHHCCcCEEEE
Q 012949 309 AKELHDMGCFEISL 322 (452)
Q Consensus 309 a~~l~~~Gad~I~L 322 (452)
++.+.+.+++.|.+
T Consensus 176 l~~~~~l~~~~is~ 189 (370)
T PRK06294 176 LHQAITLPITHISL 189 (370)
T ss_pred HHHHHccCCCeEEE
Confidence 99999999987765
No 279
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.79 E-value=2.6 Score=43.24 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---c-----CCcCCCcHHH
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---G-----DTIGVGTPGT 333 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~ 333 (452)
..+..++.+.+. .++.+..+.++|. | .+++.+.++++.+.++|+|.|.| + +-.|...++.
T Consensus 83 g~~~~~~~i~~~---~~~~~~pvi~si~---g------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~ 150 (325)
T cd04739 83 GPEEYLELIRRA---KRAVSIPVIASLN---G------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR 150 (325)
T ss_pred CHHHHHHHHHHH---HhccCCeEEEEeC---C------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHH
Confidence 344445544332 1233666665542 1 35688889999999999987655 1 3344445677
Q ss_pred HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 334 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 334 v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
+.++++.+++... +||.+-.--++.....-+.++.++||+.|..
T Consensus 151 ~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 151 YLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 8899999998764 4677766555554555666677899997754
No 280
>PRK15063 isocitrate lyase; Provisional
Probab=92.77 E-value=7.4 Score=41.54 Aligned_cols=195 Identities=15% Similarity=0.077 Sum_probs=117.7
Q ss_pred hHHHHHHcCCCEEEEEecCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC---------
Q 012949 232 GFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--------- 298 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd----~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--------- 298 (452)
-++..+++|+..|+|-+.+.. -|...+-=.+.++.++++..+...+...|.+.. -+..+ |+-
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~v-IiART----DA~aa~li~s~~ 240 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTL-VIART----DAEAADLLTSDV 240 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeE-EEEEC----Cccccccccccc
Confidence 678888999999999988653 122211114789999999777666666787632 12221 110
Q ss_pred -----------C---------CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949 299 -----------A---------IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 358 (452)
Q Consensus 299 -----------r---------~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~ 358 (452)
| .-.+...+=++...+ |||.|.+. .|.-++++++++.+.++..+|+..+.+=+--.+
T Consensus 241 d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~E--t~~~d~ee~~~fa~~v~~~~P~~~layn~sPsf 317 (428)
T PRK15063 241 DERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCE--TSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSF 317 (428)
T ss_pred cccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeC--CCCCCHHHHHHHHHhhcccCccceeecCCCCCc
Confidence 0 112333333444555 99999874 234688999999999988788543333100010
Q ss_pred C----cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949 359 G----QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430 (452)
Q Consensus 359 G----lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~ 430 (452)
- |. +++ .-..-++|..++=.++.|+ ++-|.++++++..++..|..-=+ .|. =.++..+.-
T Consensus 318 nW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~--------ha~~~a~~~~a~~~~~~Gm~ay~---~~Q-~~e~~~~~~ 385 (428)
T PRK15063 318 NWKKNLDDATIAKFQRELGAMGYKFQFITLAGF--------HSLNYSMFDLAHGYAREGMAAYV---ELQ-EAEFAAEER 385 (428)
T ss_pred ccccccCHHHHHHHHHHHHHcCceEEEechHHH--------HHHHHHHHHHHHHHHHhccHHHH---HHH-HHHHHHHhc
Confidence 0 11 122 2333369999999999988 56789999999998876542111 122 222333456
Q ss_pred CCCCCCCcccccchhh
Q 012949 431 GRPSGSKTAIALNRIA 446 (452)
Q Consensus 431 g~~~p~~~pi~G~~vf 446 (452)
|+..-.++-.+|.+-|
T Consensus 386 g~~~~~hq~~~G~~y~ 401 (428)
T PRK15063 386 GYTAVKHQREVGTGYF 401 (428)
T ss_pred CcceeechhhccccHH
Confidence 7766677777776655
No 281
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.76 E-value=5.4 Score=41.19 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=78.4
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
.++.+.+.|++.+.|.-. +. .+ ..+++++.+.|.+|. |+ .+..+.+.+...++.
T Consensus 101 svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~Ei~~Av~~ 154 (329)
T TIGR03569 101 SADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEEIEAAVGV 154 (329)
T ss_pred HHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHHHHHHHHH
Confidence 666667778887776532 21 11 245566667788876 44 234578888888888
Q ss_pred HHHCCcC--EEEE--cCCcCCCcHHHHHH--HHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 312 LHDMGCF--EISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 312 l~~~Gad--~I~L--~DT~G~~~P~~v~~--li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
+.+.|.. .|.| | +.++-+|....+ .|..+++.++ .+|++=-|- .| ...+++|+..||++|+-=+
T Consensus 155 i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt-~G--~~~~~aAvalGA~iIEkH~ 224 (329)
T TIGR03569 155 LRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT-LG--IEAPIAAVALGATVIEKHF 224 (329)
T ss_pred HHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC-cc--HHHHHHHHHcCCCEEEeCC
Confidence 8888875 2444 5 345556655433 3778888886 589985444 34 5777999999999886433
No 282
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.74 E-value=6.5 Score=41.92 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCC-c-ccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPK-W-VPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQ 215 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~-~-~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~ 215 (452)
..+.++.++-++.|.+.|++.|.+... .... . .+......++++.+..+.+. ++....|..
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~----------- 243 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRD----------- 243 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCccc-----------
Confidence 467888888899999999998876521 1100 0 01011345566665544332 221111110
Q ss_pred hccchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEe
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSC 290 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~ 290 (452)
...+-++...+.| ...+++.+ +.|+.-++ ..|+. ...+.+.++++.+++. |+.+.++++
T Consensus 244 ------------~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I- 307 (444)
T PRK14325 244 ------------FTDDLIEAYADLPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI- 307 (444)
T ss_pred ------------CCHHHHHHHHcCCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE-
Confidence 1223456666664 67788765 55554443 33433 3445667788888887 667776666
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
+|.|.++ .+.+.+..+.+.+.+.+.+.
T Consensus 308 -vG~PgET---~ed~~~tl~~i~~~~~~~~~ 334 (444)
T PRK14325 308 -VGFPGET---DEDFEATMKLIEDVGFDQSF 334 (444)
T ss_pred -EECCCCC---HHHHHHHHHHHHhcCCCeee
Confidence 6778774 57777777777788877654
No 283
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=92.71 E-value=2.1 Score=43.35 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--------------
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------- 326 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------------- 326 (452)
.+.++.+..++.++.. ..++|.+. .+.+ -++..+.+.++.+.++|+..|.|-|.+
T Consensus 61 ~~~~e~~~~~~~I~~a---~~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~ 129 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDV---TTKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ 129 (285)
T ss_pred CCHHHHHHHHHHHHhh---cCCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence 3567777766555443 35665421 2445 689999999999999999999999975
Q ss_pred CCCcHHHHHHHHHHHHHh-C-CCccEEEE----e-CCCcCcHHHHHHHHHHcCCCEEee
Q 012949 327 GVGTPGTVVPMLEAVMAV-V-PVEKLAVH----L-HDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 327 G~~~P~~v~~li~~l~~~-~-p~~~l~vH----~-Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
.+.++++..+.|++.++. . ++..|-.. . ...+--|+.-+.++.+||||.|=.
T Consensus 130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 356788888888888875 2 22233223 1 113446788888999999997755
No 284
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=92.70 E-value=1.9 Score=44.06 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~li~~l~~~~p~ 347 (452)
+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+... |.+... ..++.+..+..+++.+.++.+.
T Consensus 5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 45777899999987642 21 246788999999999988764 444332 2234456677788888887764
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS 406 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~ 406 (452)
+|+.+|. |-|.-+.....|+++|.+ ++|+|-..+-+ | .-|-+++.+.+
T Consensus 75 VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vve~Ah 125 (307)
T PRK05835 75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAH 125 (307)
T ss_pred CeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH---------HHHHHHHHHHHHH
Confidence 5677654 777789999999999998 77999876655 4 34556666665
No 285
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.69 E-value=1.5 Score=43.21 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=86.4
Q ss_pred HHHHHHcCCCEEEEEecCChH-HHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 233 FEAAIAAGAKEVAIFASASEA-FSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~-~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.+.+.++|++.+.+.-+.--. +-.. ....+.++.+..+..+.+.+ .+++.+.+-. +-.+++.+.+.++
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~-------G~g~~~~~~~~v~ 91 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADADT-------GYGNALNVARTVR 91 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcCC-------CCCCHHHHHHHHH
Confidence 344556688877664321110 0000 01335677777766655544 4555433321 2236688889999
Q ss_pred HHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCC-ccEEE-Ee-----C--CCcCcHHHHHHHHHH
Q 012949 311 ELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPV-EKLAV-HL-----H--DTYGQSLPNILISLQ 370 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~-~~l~v-H~-----H--nd~GlA~ANaLaAl~ 370 (452)
.+.+.|+..|.|-|..+ +.++++..+.|++.++...+ .++-+ -- . +...-|+.-+.++.+
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 99999999999988763 56888889999998887653 12222 22 1 456668899999999
Q ss_pred cCCCEEee
Q 012949 371 MGISTVDC 378 (452)
Q Consensus 371 aGa~~VD~ 378 (452)
+|||.|=.
T Consensus 172 AGAD~v~v 179 (243)
T cd00377 172 AGADGIFV 179 (243)
T ss_pred cCCCEEEe
Confidence 99997644
No 286
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.65 E-value=12 Score=37.52 Aligned_cols=197 Identities=12% Similarity=0.089 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.+.-.++++.|.+ .|++-|=+...... .+.+. .+|-.+.++ +..+-++++++--.. ....
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~~~~~~~~~~~~~~~viagvg~----------~~t~ 86 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE--AFLLS-TEEKKQVLEIVAEEAKGKVKLIAQVGS----------VNTA 86 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEECCCccc--cccCC-HHHHHHHHHHHHHHhCCCCCEEecCCC----------CCHH
Confidence 4789999999999999 99998877543221 12332 233333333 222223333321000 0001
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-- 297 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-- 297 (452)
+ ..+-.+.|.++|+|.|.+..+. + +..+.++.++-+.++++. .+++|..| ..|..
T Consensus 87 ~--------ai~~a~~a~~~Gad~v~v~~P~---y----~~~~~~~l~~~f~~va~a---~~lPv~iY-----n~P~~tg 143 (293)
T PRK04147 87 E--------AQELAKYATELGYDAISAVTPF---Y----YPFSFEEICDYYREIIDS---ADNPMIVY-----NIPALTG 143 (293)
T ss_pred H--------HHHHHHHHHHcCCCEEEEeCCc---C----CCCCHHHHHHHHHHHHHh---CCCCEEEE-----eCchhhc
Confidence 1 1235577888999999987653 1 234555666555555443 46676532 23432
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
...+++.+.++++ . ...+.++|+.|- +.++.+++ +..++. .-+-+++ ...+.++.+|++..
T Consensus 144 ~~l~~~~l~~L~~----~-pnvvgiK~s~~d--~~~~~~~~----~~~~~~-~v~~G~d------~~~~~~l~~G~~G~- 204 (293)
T PRK04147 144 VNLSLDQFNELFT----L-PKVIGVKQTAGD--LYQLERIR----KAFPDK-LIYNGFD------EMFASGLLAGADGA- 204 (293)
T ss_pred cCCCHHHHHHHhc----C-CCEEEEEeCCCC--HHHHHHHH----HhCCCC-EEEEeeh------HHHHHHHHcCCCEE-
Confidence 2456777776653 2 479999999773 45555543 344542 3455554 33456778997533
Q ss_pred ecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 378 CSVAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
+.| .+|.--|.++...+.
T Consensus 205 --is~----------~~n~~p~~~~~l~~~ 222 (293)
T PRK04147 205 --IGS----------TYNVNGWRARQIFEA 222 (293)
T ss_pred --Eec----------hhhhCHHHHHHHHHH
Confidence 332 345555666665553
No 287
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=92.60 E-value=7.4 Score=40.36 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.|-+ +.+|... ..+|+. ...+.+.++++.+++.|++ |.+.++ +|.|.. +.+.+.+
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L-~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~GlPgq---t~e~~~~ 170 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLL-KYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FGLPNQ---TLEDWKE 170 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cCCCCC---CHHHHHH
Confidence 3578888899999888876 4444333 334541 1244455677899999986 666665 566655 4788888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
.++.+.+.|++.|.+
T Consensus 171 ~l~~~~~l~~~~is~ 185 (374)
T PRK05799 171 TLEKVVELNPEHISC 185 (374)
T ss_pred HHHHHHhcCCCEEEE
Confidence 999999999988765
No 288
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.59 E-value=1.3 Score=44.86 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+... ..+...+.+..++..+.++..
T Consensus 5 ~~k~il~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 5 STKQMLNNAQRGGYAVPA-----FN-----IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence 346777899999987742 21 23578888899999998876 4555432 234444567888888888775
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
+|+.+|. |-|.-+.....|+++|.+ ++|+|-..+-+ | .-|-+++.+.+.
T Consensus 75 -VPV~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~ 126 (284)
T PRK09195 75 -HPLALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQ---------NISLVKEVVDFCHR 126 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 3666654 677778999999999998 77999886655 4 445566665553
No 289
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=92.54 E-value=9.7 Score=38.58 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=79.0
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
..++.++..|+..+.+..... . ..+.|.+.++.++.+.+.++.++ +.|+.+..-++. + . ..+++.+.+.+
T Consensus 76 ~~~~e~~~~Gv~y~E~r~~p~-~--~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~---r--~~~~~~~~~~~ 146 (324)
T TIGR01430 76 EYVEKAAKDGVVYAEVFFDPQ-L--HTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M---R--HKQPEAAEETL 146 (324)
T ss_pred HHHHHHHHcCCEEEEEEeCcc-c--cccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e---C--CCCHHHHHHHH
Confidence 466778889998777765421 1 22457889999998878776654 578776544442 1 1 12466777777
Q ss_pred HHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEE
Q 012949 310 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTV 376 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~V 376 (452)
+.+.+.+.+.|.=.|..| ...|+.+...+...++ . +.++.+|++.+.+. .+...++ +.|++++
T Consensus 147 ~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~-~-g~~i~~Ha~E~~~~--~~~~~~~~~~g~~ri 213 (324)
T TIGR01430 147 ELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARE-L-GLHLTVHAGELGGP--ESVREALDDLGATRI 213 (324)
T ss_pred HHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHH-C-CCCeEEecCCCCCh--HHHHHHHHHcCchhc
Confidence 766666554222113332 2235666666665554 3 45788888876332 2334455 5787643
No 290
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=92.49 E-value=2 Score=43.49 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE-EcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS-LGDT-IGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~-L~DT-~G~~~P~~v~~li~~l~~~~p~ 347 (452)
+.++.+.|++.|+-|- . |. -.+.+.+..+++.+.+.+...|- +... .-......+..+++.+.++.+
T Consensus 6 ~k~iL~~A~~~~yAV~-A----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 74 (286)
T PRK12738 6 TKYLLQDAQANGYAVP-A----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN- 74 (286)
T ss_pred HHHHHHHHHHCCceEE-E----EE-----eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-
Confidence 4577789999998774 2 21 23578888899999999877443 3322 223445667888888888875
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS 406 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~ 406 (452)
+|+.+|. |-|..+.....|+++|.+ ++|+|-..+-+ | .-|-+++.+.+
T Consensus 75 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~evv~~Ah 125 (286)
T PRK12738 75 MPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCH 125 (286)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCCCHHH---------HHHHHHHHHHHHH
Confidence 4677654 778889999999999998 77999876655 4 44555666555
No 291
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.43 E-value=1.5 Score=44.39 Aligned_cols=134 Identities=16% Similarity=0.248 Sum_probs=88.5
Q ss_pred HHHHHHcCCCEEEEEe-cCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 233 FEAAIAAGAKEVAIFA-SASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~-~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
...+.+.|.+-+.+.- +++...--.-++ .|.++.+..++++++. -.++|.+.+-.-|| ++..+.+.++
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvartV~ 100 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGFG-------EALNVARTVR 100 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHHHH
Confidence 3456667777665531 111100000012 2477777776665543 47777765554443 4778899999
Q ss_pred HHHHCCcCEEEEcCCcCC-----------CcHHHHHHHHHHHHHhCCCccEE------EEeCCCcCcHHHHHHHHHHcCC
Q 012949 311 ELHDMGCFEISLGDTIGV-----------GTPGTVVPMLEAVMAVVPVEKLA------VHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~-----------~~P~~v~~li~~l~~~~p~~~l~------vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
.+.++|+..|.|-|.++- ..++.+.+.|++.++..++..+- ...+.-+.-|+.-+.+=++|||
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 999999999999999983 56778888888888877643332 2344446778888899999999
Q ss_pred CEE
Q 012949 374 STV 376 (452)
Q Consensus 374 ~~V 376 (452)
|.|
T Consensus 181 D~i 183 (289)
T COG2513 181 DAI 183 (289)
T ss_pred cEE
Confidence 976
No 292
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.42 E-value=0.11 Score=49.90 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
..-.+-++.|.++|++.+=+-..- -.++|.+.=..+.++.+++.++..+-+. +.+-.
T Consensus 12 ~~l~~~i~~l~~~g~d~lHiDiMD-g~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~-------------------- 70 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLHIDIMD-GHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPE-------------------- 70 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEEEB-SSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGG--------------------
T ss_pred HHHHHHHHHHHHcCCCEEEEeecc-cccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHH--------------------
Confidence 344567788999999966553211 1134555434567888887766555542 22211
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
+-++..+++|++.|.+-.- +.+...++++++|++|+++...|. |. ++.+.+
T Consensus 71 -----~~i~~~~~~g~~~i~~H~E----------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~ 121 (201)
T PF00834_consen 71 -----RYIEEFAEAGADYITFHAE----------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEEL 121 (201)
T ss_dssp -----GHHHHHHHHT-SEEEEEGG----------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGG
T ss_pred -----HHHHHHHhcCCCEEEEccc----------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHH
Confidence 2677888999997776542 234455778999999999875553 32 344555
Q ss_pred HHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCC----ccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 306 AYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~----~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
.+++. -+|.|-+ +...|...-..+.+-|+.+++..+. ..|++ |=|.-..|+-...++||+.+
T Consensus 122 ~~~l~-----~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~ 191 (201)
T PF00834_consen 122 EPYLD-----QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF 191 (201)
T ss_dssp TTTGC-----CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred HHHhh-----hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 44433 2564443 2334443333455555555554432 34554 66777788888999999965
No 293
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=92.40 E-value=1.6 Score=45.35 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE-EEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I-~L~DT-~G~~~P~~v~~li~~l~~~~p~ 347 (452)
+.++++.|++.++-|-+ |. -.+.+.+..+++.+.+.+...| .+.-. ..++-...+..+++.+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA-----FN-----VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 45677899999987752 31 2367889999999999987644 44332 2333346678888888887764
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc-------CCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA-------GLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~-------GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
+|+.+|. |-|.-......|+++|.+ ++|+|-. .+-+ | .-|-+++.+.+.
T Consensus 74 VPValHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~ 132 (347)
T TIGR01521 74 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDY---------NVRVTAEVVAFAHA 132 (347)
T ss_pred CcEEEEC--CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 5777655 777788999999999998 7799976 5554 4 445667777663
No 294
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.35 E-value=5.3 Score=42.87 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
..+.+..++-++.|.+.|++.|-+... ..... ..+..++++.+....+. ++....+...
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~---~~~l~~Ll~~l~~~~~~~~ir~~~~~p~-------------- 244 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ---STDFAGLIQMLLDETTIERIRFTSPHPK-------------- 244 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC---cccHHHHHHHHhcCCCcceEEEECCCcc--------------
Confidence 468899999999999999998877532 21110 11233444444332221 1111111111
Q ss_pred hhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949 220 SVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC 294 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~ 294 (452)
. ...+-++...++| ...+++.+ +.||.-++. .|+. ...+.+.++++.+|+. ++.+.++++ +|.
T Consensus 245 ~-------~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~-m~R~--~t~~~~~~~i~~lr~~~p~i~i~td~I--vGf 312 (449)
T PRK14332 245 D-------FPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEE-MKRS--YSKEEFLDVVKEIRNIVPDVGITTDII--VGF 312 (449)
T ss_pred c-------CCHHHHHHHHhCCCccceEEECCCcCCHHHHHh-hCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--eeC
Confidence 0 1123456666777 67888876 556544433 3332 2334555677888876 566666555 677
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEE
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEI 320 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I 320 (452)
|.++ .+.+.+.++.+.+.+.+.+
T Consensus 313 PgET---~edf~~tl~~v~~l~~~~~ 335 (449)
T PRK14332 313 PNET---EEEFEDTLAVVREVQFDMA 335 (449)
T ss_pred CCCC---HHHHHHHHHHHHhCCCCEE
Confidence 8775 5777777888888887765
No 295
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.29 E-value=4 Score=43.06 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=65.2
Q ss_pred HHHHH-hC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc----CC-----cC---CCcHHHHHHHHH
Q 012949 274 AHAAK-VL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DT-----IG---VGTPGTVVPMLE 339 (452)
Q Consensus 274 v~~Ak-~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~----DT-----~G---~~~P~~v~~li~ 339 (452)
++.+| +. ...+.+.|+ +..+++.+.++++.+.++|+|.|.|- .+ .| .-.|+.++++++
T Consensus 104 i~~~k~~~~~~pvIaSi~--------~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 104 FKQLKEEYPDRILIASIM--------EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred HHHHHhhCCCCcEEEEcc--------CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 34444 44 346665553 22467999999999999999966652 11 11 147999999999
Q ss_pred HHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE---eecccCCC
Q 012949 340 AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV---DCSVAGLG 384 (452)
Q Consensus 340 ~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V---D~Sv~GlG 384 (452)
.+++... +||-+-.--+..-=..-+.+|.++||+.| ++...+++
T Consensus 176 ~Vk~~~~-iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ 222 (385)
T PLN02495 176 WINAKAT-VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMG 222 (385)
T ss_pred HHHHhhc-CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccc
Confidence 9988653 46666665554433344555778999855 55544443
No 296
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.27 E-value=4.8 Score=41.02 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=72.0
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
.++.+++.|++.|.+.... + .+.++..|+.|+.|...+. +. +.++.
T Consensus 79 ~~~~~~~~~v~~v~~~~g~-p------------------~~~i~~lk~~g~~v~~~v~-----------s~----~~a~~ 124 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGAGN-P------------------GKYIPRLKENGVKVIPVVA-----------SV----ALAKR 124 (307)
T ss_pred HHHHHHhCCCCEEEEcCCC-c------------------HHHHHHHHHcCCEEEEEcC-----------CH----HHHHH
Confidence 5677889999988764321 1 1466788888987753221 12 35677
Q ss_pred HHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCCCC
Q 012949 312 LHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGGCP 387 (452)
Q Consensus 312 l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGecP 387 (452)
+.++|+|.|.+- +.-|...+.....+++.+++.++ +||-.-..=..+-. ..+|+..||+.| -+.+..--||+
T Consensus 125 a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~t~Es~ 200 (307)
T TIGR03151 125 MEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLCAKECN 200 (307)
T ss_pred HHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEECCCCCHHH---HHHHHHcCCCEeecchHHhcccccC
Confidence 888999998872 22333222234678888888764 35555443332222 456667899854 55555556644
Q ss_pred C
Q 012949 388 Y 388 (452)
Q Consensus 388 ~ 388 (452)
.
T Consensus 201 ~ 201 (307)
T TIGR03151 201 V 201 (307)
T ss_pred C
Confidence 3
No 297
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.23 E-value=1.7 Score=43.90 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+... ..+..-+.+..++..+.++.+
T Consensus 5 ~~k~iL~~A~~~~yaV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGA-----FN-----CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 356777899999987642 21 13568888899999988866 5555543 223334556777887777775
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
. |+.+|. |-|.-......|+++|.+ ++|+|-..+-+ | .-|.+++.+.+.
T Consensus 75 V-PValHL--DH~~~~e~i~~ai~~GftSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~ 126 (284)
T PRK12857 75 V-PVALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE---------NIALTKKVVEIAHA 126 (284)
T ss_pred C-CEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 3 666654 677778899999999998 77999886655 4 445666666653
No 298
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=92.23 E-value=7.5 Score=38.92 Aligned_cols=144 Identities=21% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEecCCCCCcccccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSG-LPVVEATSFVSPKWVPQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~G-v~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.+++++..++...+.+.| +..+-++.. -|-+. |..++.+.++...+..+. +..|.. +
T Consensus 47 el~~~~~~~~~~~~~~~g~~~~v~~~gG-----EPll~~d~~ei~~~~~~~~~~~~~-~~TnG~-~-------------- 105 (347)
T COG0535 47 ELSTEEDLRVIDELAELGEIPVVIFTGG-----EPLLRPDLLEIVEYARKKGGIRVS-LSTNGT-L-------------- 105 (347)
T ss_pred ccCHHHHHHHHHHHHHcCCeeEEEEeCC-----CccccccHHHHHHHHhhcCCeEEE-EeCCCc-c--------------
Confidence 467888888999999999 666666432 13332 445555555543344433 223211 0
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
...+.++...++|++.|.|.+-..+... +-.-...+-+++++.+.++.+++.|+.+..++.. ++.+
T Consensus 106 ------~~~~~~~~l~~~g~~~v~iSid~~~~e~-hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n 171 (347)
T COG0535 106 ------LTEEVLEKLKEAGLDYVSISLDGLDPET-HDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKIN 171 (347)
T ss_pred ------CCHHHHHHHHhcCCcEEEEEecCCChhh-hhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCc
Confidence 0123667778899999999875433211 0111222356777888899999999875433332 3456
Q ss_pred HHHHHHHHHHHHHCCcCEEEE
Q 012949 302 PSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L 322 (452)
.+.+.++++.+.+.|++.+.+
T Consensus 172 ~~~l~~~~~~~~~~g~~~~~~ 192 (347)
T COG0535 172 YDELPEIADLAAELGVDELNV 192 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 788889999999999875554
No 299
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.22 E-value=2.2 Score=43.03 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCCCc
Q 012949 271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE 348 (452)
Q Consensus 271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~ 348 (452)
.++++.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.. +......+.+..++..+.+... +
T Consensus 2 k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V 70 (276)
T cd00947 2 KELLKKAREGGYAVGA-----FN-----INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V 70 (276)
T ss_pred HHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence 4567889999987752 21 23568888888888888876 444443 3333445678888888877775 3
Q ss_pred cEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949 349 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG 385 (452)
Q Consensus 349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe 385 (452)
|+.+|. |.|.-......|+++|.+ ++|+|-..+-+
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~ee 107 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFEE 107 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 666665 666778889999999998 77988776544
No 300
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.22 E-value=4 Score=41.27 Aligned_cols=123 Identities=19% Similarity=0.117 Sum_probs=77.1
Q ss_pred HhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+..+-|-++|+--|...-. .+|+.. .=|..|-...+.++++-+. -.++|.+-+- ..+ ..-+
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~--~ggv~R~~~p~~I~~I~~~---V~iPVig~~k------------igh-~~Ea 82 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRA--SGGVARMSDPKMIKEIMDA---VSIPVMAKVR------------IGH-FVEA 82 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHh--cCCeeecCCHHHHHHHHHh---CCCCEEEEee------------ccH-HHHH
Confidence 4556677888776665432 234322 2222333333333222221 2566653221 122 4567
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
+.+.++|+|.| |-+-.++| ..+++...|..| ..+|-.-+-| +..++.++..|+++|-++..|
T Consensus 83 ~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 83 QILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence 78899999999 88999999 688899999988 4445443332 567889999999999999885
No 301
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.19 E-value=5 Score=42.85 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC-CCC--CcccccCCHHHHHHHHHhcc--CCceeEEecchhhhhhhhhhhhhcc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSP--KWVPQLADARDVMEAVRDLE--GARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~--~~~p~~~D~e~v~~~i~~~~--~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
..+.++.++-++.|.+.|++.|-+... ... ...|...+..++++.+..+. ..++...-|..
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~-------------- 231 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMN-------------- 231 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCccc--------------
Confidence 457888898899999999998876421 100 00111224566677665431 11221111110
Q ss_pred chhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949 219 ASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p 295 (452)
...+-++...+. |...+++.+ +.|+.-++. .|+. ...+.+.++++.+|+.|..+.....+.+|.|
T Consensus 232 ---------i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~-m~R~--~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~P 299 (440)
T PRK14334 232 ---------FTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRR-MARE--YRREKYLERIAEIREALPDVVLSTDIIVGFP 299 (440)
T ss_pred ---------CCHHHHHHHHhcCcCCCeEEeccccCCHHHHHH-hCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEEECC
Confidence 122455666664 478888876 555544332 2322 2234455677888888766544444457778
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
.++ .+.+.+.++.+.+.+.+.+.
T Consensus 300 gEt---~ed~~~tl~~i~~l~~~~i~ 322 (440)
T PRK14334 300 GET---EEDFQETLSLYDEVGYDSAY 322 (440)
T ss_pred CCC---HHHHHHHHHHHHhcCCCEee
Confidence 764 67777788888888887654
No 302
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.17 E-value=7.2 Score=40.29 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=84.5
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCC-
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPV- 296 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~- 296 (452)
+..++|.++|.|.|.|-.. .|+..++ ..+|-|.++=++.+.++++.+|+. |.+ |..-|+. .+
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~----~~~ 220 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISG----DED 220 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeeh----hhc
Confidence 3556777899999988653 2554444 347788888888888999988885 544 3322331 11
Q ss_pred -CCCCCHHHHHHHHHHHHHCC-cCEEEEcCC-c----------CC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949 297 -EGAIPPSKVAYVAKELHDMG-CFEISLGDT-I----------GV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 361 (452)
Q Consensus 297 -~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT-~----------G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA 361 (452)
.+-.+++...++++.+.++| +|.|.+.-- . .. ..+....++++.+++.+.. +|..-. +.- -
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i-pvi~~G--~i~-~ 296 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL-PVFHAG--RIR-D 296 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC-CEEeeC--CCC-C
Confidence 11246788889999999998 899988311 0 00 0111234667777777643 444432 211 1
Q ss_pred HHHHHHHHHcC-CCEE
Q 012949 362 LPNILISLQMG-ISTV 376 (452)
Q Consensus 362 ~ANaLaAl~aG-a~~V 376 (452)
..-+..+++.| +|.|
T Consensus 297 ~~~~~~~l~~~~~D~V 312 (343)
T cd04734 297 PAEAEQALAAGHADMV 312 (343)
T ss_pred HHHHHHHHHcCCCCee
Confidence 35566777766 6654
No 303
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.16 E-value=3.9 Score=39.63 Aligned_cols=156 Identities=27% Similarity=0.334 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
-+.++-+.+++.|.+.|++.||+++-+ | ++.+.++.+++ .+++-+.+-+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGT---------------------- 71 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGT---------------------- 71 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEcccc----------------------
Confidence 578999999999999999999999743 2 34556666653 3432222111
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
....++++.|+++|.+.+- .+--+ .+++++|++.|+.+. | +-.+|.
T Consensus 72 ---VL~~~q~~~a~~aGa~fiV--sP~~~------------------~ev~~~a~~~~ip~~---------P--G~~Tpt 117 (211)
T COG0800 72 ---VLNPEQARQAIAAGAQFIV--SPGLN------------------PEVAKAANRYGIPYI---------P--GVATPT 117 (211)
T ss_pred ---ccCHHHHHHHHHcCCCEEE--CCCCC------------------HHHHHHHHhCCCccc---------C--CCCCHH
Confidence 0124589999999998653 11111 367899999999864 1 223444
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
++. .+.++|++.+-+==-....- ..+++.+.--+|+ +-+=-+-|-...|.-.-+.+|+..|
T Consensus 118 Ei~----~Ale~G~~~lK~FPa~~~Gg----~~~~ka~~gP~~~----v~~~pTGGVs~~N~~~yla~gv~av 178 (211)
T COG0800 118 EIM----AALELGASALKFFPAEVVGG----PAMLKALAGPFPQ----VRFCPTGGVSLDNAADYLAAGVVAV 178 (211)
T ss_pred HHH----HHHHcChhheeecCccccCc----HHHHHHHcCCCCC----CeEeecCCCCHHHHHHHHhCCceEE
Confidence 433 45778998777722111111 2345555544454 3444577888889999999995533
No 304
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=92.09 E-value=7.7 Score=41.11 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEe---cchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLT---PNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~---~~~~~~i~r~~~~~~~ 217 (452)
..+.+..++-++.|.+.|++.|-+... .............++++.+..+.+.....+. |..
T Consensus 167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~------------- 233 (429)
T TIGR00089 167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDD------------- 233 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhh-------------
Confidence 478899999999999999998877531 1111000011345566666554333211111 110
Q ss_pred cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~ 292 (452)
...+-++...++| ...+.+.+ +.|+.-++. .|+. ...+.+.++++.+++.| +.+.++++ +
T Consensus 234 ----------i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--v 298 (429)
T TIGR00089 234 ----------VTDDLIELIAENPKVCKHLHLPVQSGSDRILKR-MNRK--YTREEYLDIVEKIRAKIPDAAITTDII--V 298 (429)
T ss_pred ----------cCHHHHHHHHhCCCccCceeeccccCChHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--E
Confidence 1123556666664 77787754 666654443 4443 34456667888888888 66665555 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 299 G~PgET---~ed~~~tl~~i~~~~~~~~~~ 325 (429)
T TIGR00089 299 GFPGET---EEDFEETLDLVEEVKFDKLHS 325 (429)
T ss_pred ECCCCC---HHHHHHHHHHHHhcCCCEeec
Confidence 778774 677778888888888877664
No 305
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.98 E-value=4.7 Score=36.32 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
-+++|.+.+++.|.+..-... .+..+.++++..++.|+.-.. +. +|.-. -.+++......++
T Consensus 44 ~v~aa~~~~adiVglS~l~~~-------------~~~~~~~~~~~l~~~gl~~~~-vi--vGG~~--vi~~~d~~~~~~~ 105 (134)
T TIGR01501 44 FIKAAIETKADAILVSSLYGH-------------GEIDCKGLRQKCDEAGLEGIL-LY--VGGNL--VVGKQDFPDVEKR 105 (134)
T ss_pred HHHHHHHcCCCEEEEeccccc-------------CHHHHHHHHHHHHHCCCCCCE-EE--ecCCc--CcChhhhHHHHHH
Confidence 345556666676666532211 234455666777777763211 11 22100 1234555555566
Q ss_pred HHHCCcCEEEEcCCcCCCcHHHHHHHHH
Q 012949 312 LHDMGCFEISLGDTIGVGTPGTVVPMLE 339 (452)
Q Consensus 312 l~~~Gad~I~L~DT~G~~~P~~v~~li~ 339 (452)
+.++|++.+.=+.| .|+++.+.++
T Consensus 106 l~~~Gv~~vF~pgt----~~~~iv~~l~ 129 (134)
T TIGR01501 106 FKEMGFDRVFAPGT----PPEVVIADLK 129 (134)
T ss_pred HHHcCCCEEECcCC----CHHHHHHHHH
Confidence 77788888777666 5555555444
No 306
>PRK15108 biotin synthase; Provisional
Probab=91.97 E-value=1.7 Score=45.08 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH-
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA- 340 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~- 340 (452)
+.+++++ .++.+++.|+.-. .+. .+.......+.+++.++++.+.+.|+. ++-|.|.++++.+.+|.++
T Consensus 77 s~eEI~~----~a~~~~~~G~~~i-~i~--~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeAG 146 (345)
T PRK15108 77 EVEQVLE----SARKAKAAGSTRF-CMG--AAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANAG 146 (345)
T ss_pred CHHHHHH----HHHHHHHcCCCEE-EEE--ecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHcC
Confidence 4455554 4466777887632 222 111111223568899999998887753 3468999997777776544
Q ss_pred HHH------hCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949 341 VMA------VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 385 (452)
Q Consensus 341 l~~------~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 385 (452)
+.. ..|..-=.+|.+.++.--+.....|.++|...--+-+.|+||
T Consensus 147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE 197 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE 197 (345)
T ss_pred CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence 220 011100125666677778888889999999766677999999
No 307
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=91.97 E-value=8.6 Score=40.30 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949 237 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 312 (452)
Q Consensus 237 ~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~----G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l 312 (452)
...|.|.+..++-..+. ..+++++-+.+.+..+++++. .-.-.... .|| +..+-.+++.-.+-++.+
T Consensus 134 ~~ig~DI~~~LD~~~~~------~~~~~~~~~sv~rT~rw~~~~~~~~~~~~~~~~--lfg-iVQGg~~~dLR~~sa~~l 204 (366)
T PRK00112 134 YDLGSDIVMAFDECPPY------PATYDYAKKSMERTLRWAERSRDAHDRLENDQA--LFG-IVQGGVYEDLRRESAKGL 204 (366)
T ss_pred HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcce--EEE-EeeCCccHHHHHHHHHHH
Confidence 35788988877643332 234444545555444444332 00000001 121 344556667667788899
Q ss_pred HHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccCC
Q 012949 313 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 313 ~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
.+.+.+.+.|.--...-...++.++|+.++..+|.. --.|. +|.+. .+.+.++..|+|.+|.+..=.
T Consensus 205 ~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~p~r 272 (366)
T PRK00112 205 VEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED-KPRYL---MGVGTPEDLVEGVARGVDMFDCVMPTR 272 (366)
T ss_pred HhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCc-CCeEe---cCCCCHHHHHHHHHcCCCEEeeCCccc
Confidence 999999999988544457888999999999998763 22444 55554 689999999999999887543
No 308
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.94 E-value=4.6 Score=36.14 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=46.5
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.+++|.+.+++.|.+..-... .+..+.++++..++.|+ .+- +. .|... ..+++...+..+
T Consensus 42 ~v~aa~~~~adiVglS~L~t~-------------~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~ 102 (128)
T cd02072 42 FIDAAIETDADAILVSSLYGH-------------GEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEK 102 (128)
T ss_pred HHHHHHHcCCCEEEEeccccC-------------CHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHH
Confidence 445666667777776542221 23455566677777776 322 11 22110 124456666667
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHH
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPM 337 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~l 337 (452)
++.++|++.+.=++| .|.++.+-
T Consensus 103 ~L~~~Gv~~vf~pgt----~~~~i~~~ 125 (128)
T cd02072 103 RFKEMGFDRVFAPGT----PPEEAIAD 125 (128)
T ss_pred HHHHcCCCEEECcCC----CHHHHHHH
Confidence 778888888887776 55555443
No 309
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=91.91 E-value=1.6 Score=45.38 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.+.. .|.+... ..++-...+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA-----FN-----VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 456778999999987752 21 24678888999999998876 4444332 333445668888888888776
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG 382 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~G 382 (452)
.+|+.+|. |-|.-......|+++|.+ ++|+|-..
T Consensus 75 ~VPVaLHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~ 110 (347)
T PRK13399 75 DIPICLHQ--DHGNSPATCQSAIRSGFTSVMMDGSLLA 110 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence 45677654 677778889999999998 77999874
No 310
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.87 E-value=3 Score=43.70 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-------CCCcHHHHHHHHHH
Q 012949 268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------GVGTPGTVVPMLEA 340 (452)
Q Consensus 268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------G~~~P~~v~~li~~ 340 (452)
+.+.++++.+|+.++.|- + |.++....++++.+.++|++.|.+-.|+ |...|..+.++++.
T Consensus 119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~ 186 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE 186 (369)
T ss_pred HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence 455667777777763322 1 2345677889999999999999986553 55678766666554
Q ss_pred HHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 341 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 341 l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
++ ++|- + .+ -.....++.++++||+.|.
T Consensus 187 ----~~-IPVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 187 ----LD-VPVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred ----CC-CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 33 3443 3 22 3445677888899999988
No 311
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=91.78 E-value=6.7 Score=41.73 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=61.7
Q ss_pred HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.|-+. .++-. ...+|+. ...+.+.++++.+++.|+++ .+.++ +|.|.. +.+.+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~-L~~l~R~--~~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~ 212 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSE-LHALHRP--QKRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWME 212 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHH-HHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHH
Confidence 45788888999999998774 44432 3334443 24456667889999999974 45555 666765 4688888
Q ss_pred HHHHHHHCCcCEEEEcC
Q 012949 308 VAKELHDMGCFEISLGD 324 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~D 324 (452)
.++.+.+.|++.|.+-.
T Consensus 213 ~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 213 SLDQALVYRPEELFLYP 229 (430)
T ss_pred HHHHHHhCCCCEEEEcc
Confidence 88999999998777654
No 312
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.76 E-value=3.5 Score=45.02 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.....++-.+.++.|.++|++.|++. .++.+- ...-+.++.++...+-.+.+.+=|.
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~~~~~V~aGnV----------------- 292 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYGDSVKVGAGNV----------------- 292 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCCCCceEEeccc-----------------
Confidence 344566667889999999999999997 322200 0012233444432221222222222
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhh-hc--CCCHHHHHHHHHHHH-HHHHhCCCcEEEEEEeeecCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKS-NI--NCSIEDSLVRYRAVA-HAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~--~~s~e~~l~~~~~~v-~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
.+.++++.++++|+|.|.+....--+-... ++ +...-.++..+.+++ +++++.|..+. |.. |.
T Consensus 293 ------~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dg 359 (502)
T PRK07107 293 ------VDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DG 359 (502)
T ss_pred ------cCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cC
Confidence 134688999999999998865433111111 22 333444555555544 35666784332 221 33
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNIL 366 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaL 366 (452)
+-- +-..+++++. +|||.+.+.-. ++.- .+.|+..+ +-++-.-+|||...++
T Consensus 360 Gir---~~gdi~KAla-~GA~~vm~G~~------------~ag~-~espg~~~~~~g~~~k~yrgm~s~~a~ 414 (502)
T PRK07107 360 GIV---YDYHMTLALA-MGADFIMLGRY------------FARF-DESPTNKVNINGNYMKEYWGEGSNRAR 414 (502)
T ss_pred CCC---chhHHHHHHH-cCCCeeeeChh------------hhcc-ccCCCcEEEECCEEEEEeecccCHhhh
Confidence 421 2234555443 89999987542 2222 34565322 2244456899876655
No 313
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.76 E-value=2.2 Score=46.47 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
.+.++.+.++|++.|.+ |+.-..++. +.++|+.+++.+|+.+|.. -...-...+..++++|||.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 67888999999999998 665433444 4778999999998777766 2233346888999999999988654
No 314
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=91.74 E-value=21 Score=39.32 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=74.8
Q ss_pred cHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 229 YLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 229 ~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
..+.++...+.|+.+|.+-+ +.+|--+ ..+|+. ...+.+.++++.+|+.|+.|.+.++ +|.|.. +++...+
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL-~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~ 276 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDIL-ERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLE 276 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHH
Confidence 45688999999999988876 4444322 223321 2234445677999999998877776 677765 3566666
Q ss_pred HHHHHHH---CCcCEEEEcCCc-------------C---CCcHHHHHHHHHHHHHhCCC
Q 012949 308 VAKELHD---MGCFEISLGDTI-------------G---VGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 308 ~a~~l~~---~Gad~I~L~DT~-------------G---~~~P~~v~~li~~l~~~~p~ 347 (452)
.++.+.+ .++|.|.+=-+. | ..++++..+++..+.+.+|.
T Consensus 277 t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 277 MFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred HHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 7777664 788988775522 2 24557777888888888873
No 315
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.65 E-value=15 Score=36.46 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=108.6
Q ss_pred HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949 154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG 232 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ 232 (452)
+....+.|.++||+=+--+. ..-|. ..+++.+++..++.+-+|++.+.. -+.|...--++| .++
T Consensus 14 a~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~g----dF~Ys~~E~~~M-------~~d 78 (248)
T PRK11572 14 ALTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRERVTIPVHPIIRPRGG----DFCYSDGEFAAM-------LED 78 (248)
T ss_pred HHHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHhcCCCeEEEEecCCC----CCCCCHHHHHHH-------HHH
Confidence 44567889999999532111 11122 234555554446666777755431 234444433333 459
Q ss_pred HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 312 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l 312 (452)
++.+.+.|++.|.+-+-..|-.. + .+.+.++++.|+ ++++. +=.+| |..+ | ..+..+.+
T Consensus 79 i~~~~~~GadGvV~G~L~~dg~v------D----~~~~~~Li~~a~--~~~vT--FHRAf---D~~~-d---~~~al~~l 137 (248)
T PRK11572 79 IATVRELGFPGLVTGVLDVDGHV------D----MPRMRKIMAAAG--PLAVT--FHRAF---DMCA-N---PLNALKQL 137 (248)
T ss_pred HHHHHHcCCCEEEEeeECCCCCc------C----HHHHHHHHHHhc--CCceE--Eechh---hccC-C---HHHHHHHH
Confidence 99999999998887654333211 1 345566777774 55554 22334 2221 2 23567888
Q ss_pred HHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 313 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 313 ~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
.++|+++|-= +-|..+..+-.+.++.+.+..+...|- ---|.-..|.-.-++.|++.||.|-..
T Consensus 138 ~~lG~~rILT--SGg~~~a~~g~~~L~~lv~~a~~~~Im----~GgGV~~~Nv~~l~~tG~~~~H~s~~~ 201 (248)
T PRK11572 138 ADLGVARILT--SGQQQDAEQGLSLIMELIAASDGPIIM----AGAGVRLSNLHKFLDAGVREVHSSAGQ 201 (248)
T ss_pred HHcCCCEEEC--CCCCCCHHHHHHHHHHHHHhcCCCEEE----eCCCCCHHHHHHHHHcCCCEEeeCCCc
Confidence 8999998863 233344566667777777766542111 123555666655568999999988653
No 316
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=91.61 E-value=2.7 Score=42.35 Aligned_cols=122 Identities=17% Similarity=0.061 Sum_probs=77.6
Q ss_pred HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
+..+-|-++|+--|.+...+ +|.. ..-|.-|-+..+.+ +..|+ -.++|.+-+ -..+ ..-
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~--~~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~------------K~~~-~~E 79 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIR--AAGGVARMADPKMI----KEIMDAVSIPVMAKV------------RIGH-FVE 79 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhh--hcCCeeecCCHHHH----HHHHHhCCCCeEEee------------ehhH-HHH
Confidence 35556678888777765322 4442 22233333334333 22222 256664311 1223 567
Q ss_pred HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
++.+.++|+|.| |-+...+| ..+++..+|..+ +.+|-.-+- -+..++.|+++|+++|-+|+.|
T Consensus 80 a~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-----tleEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 80 AQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-----NLGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-----CHHHHHHHHHCCCCEEEecCCC
Confidence 788999999999 87788888 688999999988 433332222 2578899999999999999985
No 317
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=91.57 E-value=9.8 Score=41.02 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHH-----HHCC----CCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhh
Q 012949 145 VPTGVKVELIRRL-----VSSG----LPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSI 212 (452)
Q Consensus 145 ~~~~~k~~i~~~L-----~~~G----v~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~ 212 (452)
++.+...+.++.+ .+.| .|.|.+++... |++.+...++.+ .+..++.-+.+
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~d--------- 164 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSED--------- 164 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCC---------
Confidence 5666666666666 5666 99999997432 444455555543 24444433332
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~ 292 (452)
.+.+++|+++|.+...+..+++. +++.++++.|++.|..+.+ +
T Consensus 165 -----------------pevleaAleagad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~--- 207 (450)
T PRK04165 165 -----------------PAVLKAALEVVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K--- 207 (450)
T ss_pred -----------------HHHHHHHHHhcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E---
Confidence 24788999999998888777653 4555677888898987752 2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 328 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~ 328 (452)
.+ +.+.+.++.+.+.++|...|.| |....
T Consensus 208 -~~-----dl~~L~~lv~~~~~~GI~dIIL-DPg~g 236 (450)
T PRK04165 208 -AP-----NLEELKELVEKLQAAGIKDLVL-DPGTE 236 (450)
T ss_pred -ch-----hHHHHHHHHHHHHHcCCCcEEE-CCCCc
Confidence 11 2688889999999999988888 66443
No 318
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.51 E-value=4.1 Score=40.81 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=75.1
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++.+.++|+|.|.+-++. +.... .+...-...+.+.++++.+|+. +++|.+-+. | +.+...++++
T Consensus 107 ~a~~~~~~G~d~iElN~~c-P~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~~a~ 173 (296)
T cd04740 107 VAEKLADAGADAIELNISC-PNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVEIAR 173 (296)
T ss_pred HHHHHHHcCCCEEEEECCC-CCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHHHHH
Confidence 5566677899988775442 21111 0111112235556677777776 777664332 1 2346778899
Q ss_pred HHHHCCcCEEEEcCCcCCC------------------cH----HHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHH
Q 012949 311 ELHDMGCFEISLGDTIGVG------------------TP----GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILI 367 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~------------------~P----~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLa 367 (452)
.+.++|+|.|.+-+|.+.. .+ ....++++.+++.++ ++|-. .-|. -...+..
T Consensus 174 ~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~----~GGI~~~~da~~ 248 (296)
T cd04740 174 AAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIG----VGGIASGEDALE 248 (296)
T ss_pred HHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHH
Confidence 9999999999886654321 11 113456777777653 23322 2232 2367778
Q ss_pred HHHcCCCEEeecc
Q 012949 368 SLQMGISTVDCSV 380 (452)
Q Consensus 368 Al~aGa~~VD~Sv 380 (452)
++++||+.|..+=
T Consensus 249 ~l~~GAd~V~igr 261 (296)
T cd04740 249 FLMAGASAVQVGT 261 (296)
T ss_pred HHHcCCCEEEEch
Confidence 8888888776543
No 319
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.43 E-value=16 Score=36.27 Aligned_cols=175 Identities=23% Similarity=0.260 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~ 217 (452)
.++.+.-.++++.|.+.|++.+=+...... .+.+. +..++++.+.+..+-++.+++ .+.+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE--~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~------------ 82 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGE--SPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTA------------ 82 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--hhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHH------------
Confidence 589999999999999999999887533222 12232 223334433332222222222 1111
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV- 296 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~- 296 (452)
+ ..+-.+.|.++|++.|.+..+.. +..+.++.++-++++++. .++++..|- .|.
T Consensus 83 --~--------~~~~a~~a~~~G~d~v~~~~P~~-------~~~~~~~l~~~~~~ia~~---~~~pi~lYn-----~P~~ 137 (284)
T cd00950 83 --E--------AIELTKRAEKAGADAALVVTPYY-------NKPSQEGLYAHFKAIAEA---TDLPVILYN-----VPGR 137 (284)
T ss_pred --H--------HHHHHHHHHHcCCCEEEEccccc-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----ChhH
Confidence 1 12356778889999998876532 234566667666555553 477776432 243
Q ss_pred -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949 297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 374 (452)
Q Consensus 297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~ 374 (452)
....+++.+.++++ . ...+.++|+.| .+..+.+++ +..+. ++.+-.=+| + ..+.++..|++
T Consensus 138 ~g~~ls~~~~~~L~~----~-p~v~giK~s~~--~~~~~~~~~----~~~~~-~~~v~~G~d-~----~~~~~~~~G~~ 199 (284)
T cd00950 138 TGVNIEPETVLRLAE----H-PNIVGIKEATG--DLDRVSELI----ALCPD-DFAVLSGDD-A----LTLPFLALGGV 199 (284)
T ss_pred hCCCCCHHHHHHHhc----C-CCEEEEEECCC--CHHHHHHHH----HhCCC-CeEEEeCCh-H----hHHHHHHCCCC
Confidence 22456666666653 2 57999999977 344555443 33443 354443333 1 23446788977
No 320
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.41 E-value=1.4 Score=44.83 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeC-CCcCcHHHHHHHHHHcC
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLH-DTYGQSLPNILISLQMG 372 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~H-nd~GlA~ANaLaAl~aG 372 (452)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++..++...+ ++|-+|.- ++.--++..+..|-++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999 67888999999988887754 56777774 67888999999999999
Q ss_pred CCEEeecc
Q 012949 373 ISTVDCSV 380 (452)
Q Consensus 373 a~~VD~Sv 380 (452)
|+.|=..-
T Consensus 104 ad~vlv~~ 111 (309)
T cd00952 104 ADGTMLGR 111 (309)
T ss_pred CCEEEECC
Confidence 99776653
No 321
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.41 E-value=5.9 Score=39.49 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=89.8
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHh----------h-hcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSK----------S-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~----------~-~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~ 297 (452)
+-++...+.|+|.|-+-+|-||.... + +-|.+.++.++ .++..|+. ..++. +|. +-.|.-
T Consensus 30 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~----~~~~~r~~~~~~p~v--lm~-Y~N~i~ 102 (258)
T PRK13111 30 EIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE----LVREIREKDPTIPIV--LMT-YYNPIF 102 (258)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCEE--EEe-cccHHh
Confidence 35667778999999999998883211 1 12334444444 34555533 34432 332 212221
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
.+ -+.++++.+.++|++.+-++|- .+++..++++.+++. +...|-+- -.+.--.-...+++...|.=++
T Consensus 103 -~~---G~e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~lv-ap~t~~eri~~i~~~s~gfIY~- 171 (258)
T PRK13111 103 -QY---GVERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFLV-APTTTDERLKKIASHASGFVYY- 171 (258)
T ss_pred -hc---CHHHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEEe-CCCCCHHHHHHHHHhCCCcEEE-
Confidence 11 2346788889999999999994 678888888888764 43234333 3333344556666666664333
Q ss_pred ecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 378 CSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 378 ~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
+++.|..+ .+++. ..+++.+..++.
T Consensus 172 vs~~GvTG-----~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 172 VSRAGVTG-----ARSADAADLAELVARLKA 197 (258)
T ss_pred EeCCCCCC-----cccCCCccHHHHHHHHHh
Confidence 46676444 02222 567778888885
No 322
>PRK07094 biotin synthase; Provisional
Probab=91.41 E-value=4.5 Score=40.96 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEEee
Q 012949 301 PPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTVDC 378 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~VD~ 378 (452)
+++.+.+.++.+.+.|+..|.|.+. ......+.+.++++.++++ ++ +.+|++. |.-....+..+ ++|++.|..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~--l~i~~~~--g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LD--VAITLSL--GERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CC--ceEEEec--CCCCHHHHHHHHHcCCCEEEe
Confidence 5667777777777777777777522 1233456677777777665 33 2333322 32223333333 467777665
Q ss_pred cccC
Q 012949 379 SVAG 382 (452)
Q Consensus 379 Sv~G 382 (452)
++-+
T Consensus 146 glEs 149 (323)
T PRK07094 146 RHET 149 (323)
T ss_pred cccc
Confidence 5543
No 323
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=91.41 E-value=3 Score=42.12 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p~ 347 (452)
+.++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.++. .|.+.-. ..++....+..++..+.++..
T Consensus 4 ~k~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 72 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPA-----FN-----IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN- 72 (282)
T ss_pred HHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 45677899999987742 21 23678888899999998876 4444332 233445667888888888775
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS 406 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~ 406 (452)
+|+.+|. |.|.-......|+++|.+ ++|+|-..+-+ | .-|-+++.+.+
T Consensus 73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah 123 (282)
T TIGR01858 73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQ---------NVKLVKEVVDFCH 123 (282)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCHHH---------HHHHHHHHHHHHH
Confidence 4677655 667778899999999998 77998776554 3 34455555555
No 324
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.41 E-value=3.8 Score=40.66 Aligned_cols=174 Identities=18% Similarity=0.241 Sum_probs=99.5
Q ss_pred HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949 152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~ 230 (452)
.+.+.|..+|-+.+-+..- +... ...+.+++.++.. +. .+.||.. -.+..++.++
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~-----~~~~~~~~~i~~~-~~---~~lpNTa--------G~~ta~eAv~------- 80 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLG-----QGGDNLLDLLPPL-GV---TLLPNTA--------GCRTAEEAVR------- 80 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCC-----CCcchHHhhcccc-CC---EECCCCC--------CCCCHHHHHH-------
Confidence 4567888999999988742 1111 1124567766531 22 1345543 1112222222
Q ss_pred HhHHHHHH-cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949 231 QGFEAAIA-AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVA 306 (452)
Q Consensus 231 ~~ie~a~~-~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~r~d~e~l~ 306 (452)
-.+.|.+ .+.++|.+-+-..+. .-+.++.+.++.|+++ |+.|..|.. + |+
T Consensus 81 -~a~lare~~~~~~iKlEVi~d~~-----------~llpd~~~tv~aa~~L~~~Gf~vlpyc~------~----d~---- 134 (250)
T PRK00208 81 -TARLAREALGTNWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFVVLPYCT------D----DP---- 134 (250)
T ss_pred -HHHHHHHHhCCCeEEEEEecCCC-----------CCCcCHHHHHHHHHHHHHCCCEEEEEeC------C----CH----
Confidence 2344444 367888887654442 1245566777888887 998864332 1 22
Q ss_pred HHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE--eeccc
Q 012949 307 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV--DCSVA 381 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V--D~Sv~ 381 (452)
..++++.++|++.| .+ ..+|...+-.-.++++.+++.. .++|-+-. |.. -.-+..|++.|++.| .++|.
T Consensus 135 ~~ak~l~~~G~~~v-mPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVIvea----GI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 135 VLAKRLEEAGCAAV-MPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIVDA----GIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred HHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEEEeC----CCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 47788888999988 44 6666555544466677777763 34443332 222 256778899999854 44444
No 325
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=91.39 E-value=6 Score=41.69 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=61.0
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.+-+..-+-.....+|+. ...+.+.++++.+++.|++ |.+.++ +|.|.. +.+.+.+-
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~G~~~v~~dlI--~GlPgq---t~e~~~~t 187 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRS--HRVKDIFAAVDLIHQAGIENFSLDLI--SGLPHQ---TLEDWQAS 187 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 457888889999999998744333333344442 2334455677899999998 666666 666754 46888888
Q ss_pred HHHHHHCCcCEEEE
Q 012949 309 AKELHDMGCFEISL 322 (452)
Q Consensus 309 a~~l~~~Gad~I~L 322 (452)
++.+.+++++.|.+
T Consensus 188 l~~~~~l~p~~is~ 201 (400)
T PRK07379 188 LEAAIALNPTHLSC 201 (400)
T ss_pred HHHHHcCCCCEEEE
Confidence 89999999988865
No 326
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=91.37 E-value=7.1 Score=39.59 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
.+.+.++++.+++.|+.|.+.++ +|.|.. +.+.+.+.++.+.+++++.|.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 34556777888889998877666 566665 3578888888888888887764
No 327
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=91.34 E-value=5.4 Score=34.61 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHH-HHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhcc
Q 012949 143 NTVPTGVKVELIRRL-VSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCH 218 (452)
Q Consensus 143 ~~~~~~~k~~i~~~L-~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~ 218 (452)
..++.++.++.++.+ .+.|+..+..+..- |.+. +....+..+.+. .+.++...+.+..
T Consensus 26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~ge-----p~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~------------- 87 (166)
T PF04055_consen 26 REMSPEEILEEIKELKQDKGVKEIFFGGGE-----PTLHPDFIELLELLRKIKKRGIRISINTNGTL------------- 87 (166)
T ss_dssp EECHHHHHHHHHHHHHHHTTHEEEEEESST-----GGGSCHHHHHHHHHHHCTCTTEEEEEEEESTT-------------
T ss_pred ccCCHHHHHHHHHHHhHhcCCcEEEEeecC-----CCcchhHHHHHHHHHHhhccccceeeeccccc-------------
Confidence 358999999999999 69998888887431 2221 233444444443 3444444444332
Q ss_pred chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
...+.++...+.|.+.|.+.+...+-. .....+ +....+.+.++++.+++.|+.....+. ++.|..
T Consensus 88 ---------~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~ 154 (166)
T PF04055_consen 88 ---------LDEELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE 154 (166)
T ss_dssp ---------HCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT
T ss_pred ---------hhHHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC
Confidence 012478888999999999976443332 333342 123345556777999999987322232 334443
Q ss_pred CCCCHHHHHHHHHH
Q 012949 298 GAIPPSKVAYVAKE 311 (452)
Q Consensus 298 ~r~d~e~l~~~a~~ 311 (452)
+.+++.++++.
T Consensus 155 ---~~~e~~~~~~~ 165 (166)
T PF04055_consen 155 ---NDEEIEETIRF 165 (166)
T ss_dssp ---SHHHHHHHHHH
T ss_pred ---CHHHHHHHhCc
Confidence 35666666654
No 328
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=91.31 E-value=7.9 Score=38.65 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++..++.|++.+.+.-+..|.+ ..|.+|-.+.++.+++.++. ..+|.+.+. ..+.+...++++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~~-~~~vi~gv~---------~~st~~~i~~a~ 90 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAAG-RVPVIAGVG---------ANSTEEAIELAR 90 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHTT-SSEEEEEEE---------SSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHccC-ceEEEecCc---------chhHHHHHHHHH
Confidence 467778889999999988888863 46777777766666666543 345543332 235788889999
Q ss_pred HHHHCCcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949 311 ELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL 354 (452)
Q Consensus 311 ~l~~~Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~ 354 (452)
.+.++|+|.+. ++=.....+++++.+.++.+.+..+ .+|-++-
T Consensus 91 ~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~-~pi~iYn 134 (289)
T PF00701_consen 91 HAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATD-LPIIIYN 134 (289)
T ss_dssp HHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS-SEEEEEE
T ss_pred HHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcC-CCEEEEE
Confidence 99999999664 4455666788888888888886543 3455443
No 329
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.25 E-value=13 Score=35.05 Aligned_cols=174 Identities=18% Similarity=0.138 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++...-.+.++.+.+.|++.|+++.--.+ +.|...-..+..+.++......+.+ ++-..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~----------------- 73 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMVENP----------------- 73 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCC-cCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCH-----------------
Confidence 356667778899999999999999632111 1222111123344454432222212 22111
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
.+.++.+.++|++.|.+....++ ...+.++.+|+.|+.+...+. | .++
T Consensus 74 --------~~~i~~~~~~g~d~v~vh~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~t~ 121 (220)
T PRK05581 74 --------DRYVPDFAKAGADIITFHVEASE----------------HIHRLLQLIKSAGIKAGLVLN-----P---ATP 121 (220)
T ss_pred --------HHHHHHHHHcCCCEEEEeeccch----------------hHHHHHHHHHHcCCEEEEEEC-----C---CCC
Confidence 13677788999999777654333 223457888999987653221 1 122
Q ss_pred HHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCC----ccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 302 PSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~----~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
.+.+..+. .++|.|.+ +-+.|...+....+.++.+++..+. ..+.+ +-|.-..|.-.++++|+
T Consensus 122 ~e~~~~~~-----~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~Ga 192 (220)
T PRK05581 122 LEPLEDVL-----DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGA 192 (220)
T ss_pred HHHHHHHH-----hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCC
Confidence 33333222 23564444 2233433344556666666654432 11222 35888888888888998
Q ss_pred CEE
Q 012949 374 STV 376 (452)
Q Consensus 374 ~~V 376 (452)
+.|
T Consensus 193 D~v 195 (220)
T PRK05581 193 DVF 195 (220)
T ss_pred CEE
Confidence 865
No 330
>PLN02623 pyruvate kinase
Probab=91.22 E-value=25 Score=39.17 Aligned_cols=250 Identities=12% Similarity=0.090 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
++..++.. ++...+.|+|+|-+.|-.++ .|-.++.+.++.. ..+.+.+.+-...
T Consensus 276 lTekD~~d-i~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~e------------------ 330 (581)
T PLN02623 276 ITEKDWED-IKFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESAD------------------ 330 (581)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHH------------------
Confidence 56666666 56778999999988653222 1333334444332 1222323232211
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----EeeecCCCCCC
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGA 299 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l----~~~~g~p~~~r 299 (452)
-.+.++..++ |+|.|.|. -.|.-... ..++......++++.|+++|.++.+.- ++.+ .|..+|
T Consensus 331 -----aVeNldeIl~-g~DgImIg--rgDLgvel----g~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTR 397 (581)
T PLN02623 331 -----SIPNLHSIIT-ASDGAMVA--RGDLGAEL----PIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTR 397 (581)
T ss_pred -----HHHhHHHHHH-hCCEEEEC--cchhhhhc----CcHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCc
Confidence 1235566555 99966654 44543222 236777778889999999999985322 0111 233333
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-cc-------EEEEeCCC--cCcHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EK-------LAVHLHDT--YGQSLPNILIS 368 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~-------l~vH~Hnd--~GlA~ANaLaA 368 (452)
.++.+++.. ...|++.|.|. ||.=...|.+..+++..+..+.-. .. +.-+..++ --+|.+....|
T Consensus 398 ---AEv~Dva~a-v~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A 473 (581)
T PLN02623 398 ---AEVSDIAIA-VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMA 473 (581)
T ss_pred ---hhHHHHHHH-HHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHH
Confidence 445555543 55699988887 676677899888888887654311 00 00111111 23555566667
Q ss_pred HHcCCCEEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCCC
Q 012949 369 LQMGISTVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGS 436 (452)
Q Consensus 369 l~aGa~~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p~ 436 (452)
-..++.+|--|-.|--. + |-+|- -+-++-+.++..|.-+ |+.+ .-|.+.+...+....+..|.--+.
T Consensus 474 ~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~G 552 (581)
T PLN02623 474 NTLGTSIIVFTRTGFMAILLSHYRPSGTI-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEG 552 (581)
T ss_pred HhcCCcEEEECCCcHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 78888888888777532 0 11110 1234556666666653 6543 124555555444444445554443
Q ss_pred C
Q 012949 437 K 437 (452)
Q Consensus 437 ~ 437 (452)
.
T Consensus 553 D 553 (581)
T PLN02623 553 E 553 (581)
T ss_pred C
Confidence 3
No 331
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.16 E-value=15 Score=35.50 Aligned_cols=108 Identities=24% Similarity=0.261 Sum_probs=68.3
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc---HHHHHHHHHHHHHhCCCccE----EEEeCCCcCc
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQ 360 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~li~~l~~~~p~~~l----~vH~Hnd~Gl 360 (452)
++.++|+|... .+.+--..-++.+.++|||.|-+.=-.|.+. -..+.+-++.+++...+.++ +...=++.-+
T Consensus 56 v~tVigFP~G~-~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei 134 (211)
T TIGR00126 56 ICTVVGFPLGA-STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI 134 (211)
T ss_pred EEEEeCCCCCC-CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence 45567788765 4444444455778889999998887788544 46677777887776544332 2222122223
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 406 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~ 406 (452)
. -.+..|+++|||+|=+|-+ .+ .+.+..|++-.+.+
T Consensus 135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~ 170 (211)
T TIGR00126 135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRN 170 (211)
T ss_pred H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 3 4566788999999998843 22 23477777665554
No 332
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=91.15 E-value=0.89 Score=46.00 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEc-CCcCCCcHHHHHHHHHHHHHh
Q 012949 267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLG-DTIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~-DT~G~~~P~~v~~li~~l~~~ 344 (452)
|.+++++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.+.. .|.+. .+........+..+++.+.++
T Consensus 2 lv~~~~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~ 71 (287)
T PF01116_consen 2 LVNMKELLKKAKEGGYAVPA-----FN-----VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE 71 (287)
T ss_dssp BHHHHHHHHHHHHHT-BEEE-----EE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCeEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence 45677889999999988752 32 23568888899999998876 44443 345555556778888888888
Q ss_pred CCCccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 345 VPVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 345 ~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
+. +|+.+|. |-|..+.....|+++|.+ ++|+|-..+-+ | .-|-+++.+.+.
T Consensus 72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~ah~ 125 (287)
T PF01116_consen 72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE---------NIAITREVVEYAHA 125 (287)
T ss_dssp ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH---------HHHHHHHHHHHHHH
T ss_pred cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH---------HHHHHHHHHHhhhh
Confidence 85 4676654 555559999999999998 77999887777 5 456677777774
No 333
>PLN02591 tryptophan synthase
Probab=91.13 E-value=9.2 Score=37.98 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=88.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHh-----------hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSK-----------SNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG 298 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~-----------~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~ 298 (452)
+-++...+.|+|.|-+-++-||.... .+-|.+.++.++.+ +..|+ ..+++. ++. +-.+.-
T Consensus 20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~i--lm~-Y~N~i~- 91 (250)
T PLN02591 20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPIV--LFT-YYNPIL- 91 (250)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCEE--EEe-cccHHH-
Confidence 35666778999999999988883211 11244444555443 44443 334432 332 111111
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
. --+.++++.+.++|++.+.++|- .+++..++.+.++++ ....|-+ .--+.-..-...+++...|.=+. .
T Consensus 92 ~---~G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl~~I~l-v~Ptt~~~ri~~ia~~~~gFIY~-V 161 (250)
T PLN02591 92 K---RGIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GIELVLL-TTPTTPTERMKAIAEASEGFVYL-V 161 (250)
T ss_pred H---hHHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CCeEEEE-eCCCCCHHHHHHHHHhCCCcEEE-e
Confidence 1 12456788899999999999993 678888888887764 3222333 32333334455566665665443 2
Q ss_pred cccCCCCCCCCCCCCC-cccHHHHHHHHHc
Q 012949 379 SVAGLGGCPYAKGASG-NVATEDVVYMLSG 407 (452)
Q Consensus 379 Sv~GlGecP~a~graG-NaalE~vv~~L~~ 407 (452)
|..|.-+ .+++ ...+++.+..+++
T Consensus 162 s~~GvTG-----~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 162 SSTGVTG-----ARASVSGRVESLLQELKE 186 (250)
T ss_pred eCCCCcC-----CCcCCchhHHHHHHHHHh
Confidence 4444433 0344 3667888888885
No 334
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.08 E-value=1.8 Score=42.63 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=71.0
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+-++.+.+.|.+.|-|....-++ + .+.-.++|+.+++.|++|-..+-.-+..+ ....+++.+.+.++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i--------~----~~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~ 141 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEI--------S----LEERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLIN 141 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCC--------C----HHHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHH
Confidence 46678999999999998654332 1 24445788999999999864433322111 12468889999999
Q ss_pred HHHHCCcCEEEE-----------cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949 311 ELHDMGCFEISL-----------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 356 (452)
Q Consensus 311 ~l~~~Gad~I~L-----------~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn 356 (452)
...++||+.|.+ .|..|-.....+.+++ +++|..+|-|-+=+
T Consensus 142 ~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~----~~l~~eklifEAp~ 194 (237)
T TIGR03849 142 KDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLA----ENVDINKVIFEAPQ 194 (237)
T ss_pred HHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHH----hhCChhcEEEECCC
Confidence 999999976654 4444444444444444 44665456665544
No 335
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.04 E-value=6 Score=42.36 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
..+.++.++=++.|.+.|++.|.+.... ...... ..+..++++.+... ...++-..+.. +.
T Consensus 177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~-~~~l~~Ll~~l~~~~~~~rir~~~~~--------------p~ 241 (445)
T PRK14340 177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA-GADFAGLLDAVSRAAPEMRIRFTTSH--------------PK 241 (445)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC-CchHHHHHHHHhhcCCCcEEEEccCC--------------hh
Confidence 4688899999999999999988774211 011000 01344555555432 22222211110 00
Q ss_pred hhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949 220 SVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC 294 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~ 294 (452)
. ...+-++...++ |...+++.+ +.||.-++. .|+. ...+.+.++++.+|+. |+.+.+++. +|.
T Consensus 242 ~-------l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~I--vGf 309 (445)
T PRK14340 242 D-------ISESLVRTIAARPNICNHIHLPVQSGSSRMLRR-MNRG--HTIEEYLEKIALIRSAIPGVTLSTDLI--AGF 309 (445)
T ss_pred h-------cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEeccEE--EEC
Confidence 0 112345555554 688899876 556654443 3332 2345666788999988 998887776 677
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 310 PgET---~edf~~tl~~~~~~~~~~~~ 333 (445)
T PRK14340 310 CGET---EEDHRATLSLMEEVRFDSAF 333 (445)
T ss_pred CCCC---HHHHHHHHHHHHhcCCCEEe
Confidence 8774 56677777777777776554
No 336
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.04 E-value=3.6 Score=41.66 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCc-HHHHHHHHHHHHHhC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGT-PGTVVPMLEAVMAVV 345 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~-P~~v~~li~~l~~~~ 345 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.... .++. ...+..+++.+.++.
T Consensus 5 ~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~ 74 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQ-----YN-----LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDL 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHc
Confidence 346777899999987642 21 23678888899999998877 44444332 2223 355788888888777
Q ss_pred CC-ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949 346 PV-EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 383 (452)
Q Consensus 346 p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 383 (452)
+. +|+.+|. |.|.-+.....|+++|.+ ++|+|-..+
T Consensus 75 ~~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ 113 (286)
T PRK08610 75 NITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPF 113 (286)
T ss_pred CCCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 52 4677655 667678899999999998 779887644
No 337
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.97 E-value=5 Score=40.19 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=59.3
Q ss_pred hHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++..++. |++.|-+.-+..|. ...|.+|-.+.++.+++.++. .++|.+.+ +..+.+...++++
T Consensus 26 ~i~~l~~~~Gv~gi~~~GstGE~-----~~Lt~~Er~~~~~~~~~~~~~-~~~viagv---------~~~~~~~ai~~a~ 90 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGSTGEG-----FLLSVEERKQIAEIVAEAAKG-KVTLIAHV---------GSLNLKESQELAK 90 (288)
T ss_pred HHHHHHhcCCCCEEEECcCCcCc-----ccCCHHHHHHHHHHHHHHhCC-CCeEEecc---------CCCCHHHHHHHHH
Confidence 56677777 88888887777664 234556555555555554432 23332111 2234566777777
Q ss_pred HHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccE
Q 012949 311 ELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKL 350 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l 350 (452)
.+.++|||.+.+.=. .-..+++++.+.++.+.+..|+.+|
T Consensus 91 ~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi 131 (288)
T cd00954 91 HAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPM 131 (288)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 777777776654222 2223556677777777666643333
No 338
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=90.87 E-value=5.5 Score=39.23 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949 154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i 233 (452)
...|..+.++.|-.|.-+.. |+ ...+++.+.++.-. ...++.++... -+
T Consensus 64 ~~ll~~a~~dvi~~~cTsgs-~~---~G~~~~~~~i~~~~-~g~p~tt~~~A--------------------------~~ 112 (239)
T TIGR02990 64 ALILPDEELDVVAYSCTSAS-VV---IGDDEVTRAINAAK-PGTPVVTPSSA--------------------------AV 112 (239)
T ss_pred HHhcCCCCCCEEEEccchhh-ee---cCHHHHHHHHHhcC-CCCCeeCHHHH--------------------------HH
Confidence 34445589999988743221 11 12345666665421 12333333221 44
Q ss_pred HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHHHHHHH
Q 012949 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAK 310 (452)
Q Consensus 234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l~~~a~ 310 (452)
++..+.|+++|.+..|=.+ +--..+.++..+.|++|..... +|..+. ++.+++.+.+.++
T Consensus 113 ~AL~alg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~--~~~~~~~~ia~i~p~~i~~~~~ 175 (239)
T TIGR02990 113 DGLAALGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTC--LGLTDDREMARISPDCIVEAAL 175 (239)
T ss_pred HHHHHcCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeec--cCCCCCceeeecCHHHHHHHHH
Confidence 5566779999999987433 1123456778889999864333 444332 4689999999999
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p 346 (452)
++...++|.|.+..| =..+.++|+.+-+.++
T Consensus 176 ~~~~~~aDAifisCT-----nLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 176 AAFDPDADALFLSCT-----ALRAATCAQRIEQAIG 206 (239)
T ss_pred HhcCCCCCEEEEeCC-----CchhHHHHHHHHHHHC
Confidence 998889999999865 3556777777777664
No 339
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.82 E-value=2.1 Score=42.56 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=55.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHCCcCEEEEcC-CcC----CCcHH-H---HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949 296 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-TIG----VGTPG-T---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 365 (452)
Q Consensus 296 ~~~r-~d~e~l~~~a~~l~~~Gad~I~L~D-T~G----~~~P~-~---v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa 365 (452)
+.++ .+++.+.+.++.+.+.||+.|-+.- +.. ..+|+ + +..+|+.+++.+. .+|.+|.++. .-.
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-~plsiDT~~~-----~vi 88 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD-VPISVDTYRA-----EVA 88 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEeCCCH-----HHH
Confidence 3445 4789999999999999999999941 111 11333 3 6666777766554 5899999985 455
Q ss_pred HHHHHcCCCEEeec
Q 012949 366 LISLQMGISTVDCS 379 (452)
Q Consensus 366 LaAl~aGa~~VD~S 379 (452)
.+|+++|+++|+-.
T Consensus 89 ~~al~~G~~iINsi 102 (257)
T TIGR01496 89 RAALEAGADIINDV 102 (257)
T ss_pred HHHHHcCCCEEEEC
Confidence 67888899988654
No 340
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.81 E-value=8.6 Score=37.68 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=69.7
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-EEe----eecCCCCC--CCCH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSC----VVGCPVEG--AIPP 302 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~-l~~----~~g~p~~~--r~d~ 302 (452)
+.++.+.++|.+.|-+.... .+.. ....++. ..+.++.+.+++.|+++... +.. .++.++.. ....
T Consensus 20 e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred HHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence 57899999999999986432 1110 0112332 23456677889999998631 111 11111110 0123
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCcCc
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTYGQ 360 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~Gl 360 (452)
+.+.+.++.+.++|++.|.+..... ...+.....+++.+++.. -++.|.+|.|.+.-+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~ 159 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFM 159 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcccc
Confidence 4567788888999999999852211 122344444444444322 246899999865433
No 341
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.81 E-value=20 Score=36.19 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
.++.+.-.++++.+.+.|++-|=++..... .+.+. .+|-.+.++ +..+-++++++- .. .....+
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE--~~~Ls-~~Er~~l~~~~~~~~~g~~pvi~g-v~---------~~~t~~ 83 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGE--PGSLT-LEERKQAIENAIDQIAGRIPFAPG-TG---------ALNHDE 83 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccCC-HHHHHHHHHHHHHHhCCCCcEEEE-CC---------cchHHH
Confidence 478999999999999999998877533221 13332 233344433 222223333321 10 000011
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--C
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--G 298 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~ 298 (452)
..+-.+.|.+.|+|.+.+..+.- +.-+.++.++-+..+++.+. ++++..| ..|.. .
T Consensus 84 --------ai~~a~~A~~~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~iY-----n~P~~tg~ 141 (294)
T TIGR02313 84 --------TLELTKFAEEAGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIIIY-----NIPGRAAQ 141 (294)
T ss_pred --------HHHHHHHHHHcCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEEE-----eCchhcCc
Confidence 12355677889999998876531 23355555555555544321 5666532 23432 2
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
..+++.+.+++++ -...+.++||.|- ...+.+++ +..+. .+.+ .+++ ...+.++.+|++..
T Consensus 142 ~l~~~~l~~L~~~----~pnv~giK~ss~d--~~~~~~~~----~~~~~-~~~v~~G~d------~~~~~~l~~Ga~G~ 203 (294)
T TIGR02313 142 EIAPKTMARLRKD----CPNIVGAKESNKD--FEHLNHLF----LEAGR-DFLLFCGIE------LLCLPMLAIGAAGS 203 (294)
T ss_pred CCCHHHHHHHHhh----CCCEEEEEeCCCC--HHHHHHHH----HhcCC-CeEEEEcch------HHHHHHHHCCCCEE
Confidence 4567766666642 2479999999874 34444443 33343 3444 3333 55667888998643
No 342
>PRK10481 hypothetical protein; Provisional
Probab=90.78 E-value=9.8 Score=37.25 Aligned_cols=132 Identities=25% Similarity=0.263 Sum_probs=79.8
Q ss_pred CCccccCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhh
Q 012949 132 VGPRDGLQNEKNTVPTGVKV----ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVI 207 (452)
Q Consensus 132 ~TLRDG~Q~~~~~~~~~~k~----~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~ 207 (452)
+=||||.|. .++..... ..+..|++.|++.|-+..+.. +|.+. ..+. ..+.|.+-
T Consensus 60 trL~dG~~v---~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgd---fp~l~-------a~r~------~l~~P~~~-- 118 (224)
T PRK10481 60 TRLNDGQQV---HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGE---FPSLT-------ARNA------ILLEPSRI-- 118 (224)
T ss_pred EEecCCCEE---EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCC---CCCcc-------ccCc------cccCchhh--
Confidence 459999997 45554443 446678889999998865432 12121 1110 11112110
Q ss_pred hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949 208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 287 (452)
Q Consensus 208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~ 287 (452)
| ..+-.|+..| ++|.|+.+.-+ .+....++-++.|+++...
T Consensus 119 --------------i--------~~lv~Al~~g-~riGVitP~~~----------------qi~~~~~kw~~~G~~v~~~ 159 (224)
T PRK10481 119 --------------L--------PPLVAAIVGG-HQVGVIVPVEE----------------QLAQQAQKWQVLQKPPVFA 159 (224)
T ss_pred --------------H--------HHHHHHhcCC-CeEEEEEeCHH----------------HHHHHHHHHHhcCCceeEe
Confidence 0 1333444344 88999887533 2223445555669998722
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 330 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 330 (452)
. .+|.. .+++.+.+.++.+.+.|+|.|.+ |-+|+.+
T Consensus 160 ~----aspy~--~~~~~l~~aa~~L~~~gaD~Ivl-~C~G~~~ 195 (224)
T PRK10481 160 L----ASPYH--GSEEELIDAGKELLDQGADVIVL-DCLGYHQ 195 (224)
T ss_pred e----cCCCC--CCHHHHHHHHHHhhcCCCCEEEE-eCCCcCH
Confidence 2 23442 56778999999999999999988 8888877
No 343
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.77 E-value=19 Score=38.27 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCC-ccc--ccCCHHHHHHHHHhccCCc-eeEEecchhhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPK-WVP--QLADARDVMEAVRDLEGAR-LPVLTPNLKVILQRSILFQQ 216 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~-~~p--~~~D~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~~~~~ 216 (452)
..+.++.++-++.|.+.|++.|-+... .... +.. ...+..++++.+..+++.. +....+...
T Consensus 155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~----------- 223 (420)
T PRK14339 155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPL----------- 223 (420)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChh-----------
Confidence 368899999999999999998887532 1111 000 0113456666665444431 111111000
Q ss_pred ccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEee
Q 012949 217 CHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCV 291 (452)
Q Consensus 217 ~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~ 291 (452)
. ...+-++.+.++ |...+++.+ +.||.-++ ..|+. ...+.+.++++.+++. |+.+..+++
T Consensus 224 ----~------~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk-~M~R~--~t~~~~~~~v~~lr~~~p~i~i~~d~I-- 288 (420)
T PRK14339 224 ----H------MDDKFLEEFAKNPKICKSIHMPLQSGSSEILK-AMKRG--YTKEWFLNRAEKLRALVPEVSISTDII-- 288 (420)
T ss_pred ----h------cCHHHHHHHHcCCCccCceEeCCccCCHHHHH-hccCC--CCHHHHHHHHHHHHHHCCCCEEEEEEE--
Confidence 0 122355666666 467888876 55664433 23332 1244455666777776 666766665
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
+|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 289 vGfPgET---eedf~~Tl~fl~~l~~~~~~ 315 (420)
T PRK14339 289 VGFPGES---DKDFEDTMDVLEKVRFEQIF 315 (420)
T ss_pred EECCCCC---HHHHHHHHHHHHhcCCCEEe
Confidence 6778775 56666666666777766443
No 344
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.74 E-value=4.8 Score=38.59 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=69.4
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.+.++|++.|.+....+ .+.++.+++.++.+...+ .+. +.++
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~ 116 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR 116 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence 478889999999998754311 134456666777664211 122 3345
Q ss_pred HHHHCCcCEEEEcC--CcCCCcHH--HHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeec
Q 012949 311 ELHDMGCFEISLGD--TIGVGTPG--TVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCS 379 (452)
Q Consensus 311 ~l~~~Gad~I~L~D--T~G~~~P~--~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~S 379 (452)
.+.+.|+|.|.+-. +.|...+. ...++++.+++.++ .++-..+ |... .|...++.+|++.|...
T Consensus 117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEc
Confidence 56678999887732 22333332 34567788877654 3555543 6655 78888999999988765
No 345
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.70 E-value=1.3 Score=43.95 Aligned_cols=94 Identities=17% Similarity=0.089 Sum_probs=61.6
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVA 306 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l~ 306 (452)
.+.++.+.+.|.+.|-|....-++ ..+.-.++|+.+++.|++|-. .+|.-+. ...+++.+.
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti~l------------~~~~r~~~I~~~~~~Gf~v~~----EvG~K~~~~~~~~~~~~~i 150 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTIDL------------PEEERLRLIRKAKEEGFKVLS----EVGKKDPESDFSLDPEELI 150 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEE----EES-SSHHHHTT--CCHHH
T ss_pred HHHHHHHHHcCCCEEEecCCceeC------------CHHHHHHHHHHHHHCCCEEee----cccCCCchhcccCCHHHHH
Confidence 357889999999999998765443 123445788999999999863 2443332 234578999
Q ss_pred HHHHHHHHCCcCEEEE----------cCCcCCCcHHHHHHHHH
Q 012949 307 YVAKELHDMGCFEISL----------GDTIGVGTPGTVVPMLE 339 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L----------~DT~G~~~P~~v~~li~ 339 (452)
+.++...++||+.|.+ .|..|-...+.+.++++
T Consensus 151 ~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~ 193 (244)
T PF02679_consen 151 EQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIE 193 (244)
T ss_dssp HHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHH
Confidence 9999999999997754 56677777777777765
No 346
>PRK07360 FO synthase subunit 2; Reviewed
Probab=90.64 E-value=2.2 Score=44.56 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEe---------CCCcCcHHHHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILI 367 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~---------Hnd~GlA~ANaLa 367 (452)
..++|.+.+.++.+.++|+.+|.|..-.+... ++.+.++++.+|+.+|. +.+|+ -.+.|+..-..+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 46889999999999999999999983222221 45688999999998875 33442 2367888888777
Q ss_pred HH-HcCCCEEe
Q 012949 368 SL-QMGISTVD 377 (452)
Q Consensus 368 Al-~aGa~~VD 377 (452)
.+ +||++.+.
T Consensus 168 ~LkeAGld~~~ 178 (371)
T PRK07360 168 ALKDAGLDSMP 178 (371)
T ss_pred HHHHcCCCcCC
Confidence 77 69999885
No 347
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=90.59 E-value=21 Score=36.14 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHCCCCEEEEecCCCC-Ccc-cccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 149 VKVELIRRLVSSGLPVVEATSFVSP-KWV-PQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 149 ~k~~i~~~L~~~Gv~~IEvG~~~s~-~~~-p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
.-...+....+.|.+.+|+= +++| .|. |.++ |..+......+ ....+.+..|=.-++ .....+..+..
T Consensus 15 ~~~~~~~~a~~iG~na~~if-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vHApYlINl-------~s~~~e~~ekS 85 (280)
T COG0648 15 SLVNAVERAREIGLNAFEIF-LVNPRVWISPPLAEDAIELFKAALK-DDVQLSVHAPYLINL-------ASPEKEKVEKS 85 (280)
T ss_pred hHHHHHHHHHHcCCCEEEEE-ecCcccccCCCchHHHHHHHHHhhc-cCceEEeecceeecC-------CCCCHHHHHHH
Confidence 34666777888999999983 3444 232 2232 11222222212 123344433311100 01111112211
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
+..-.+.++++...|+..|.+--. ...+.+.++.++++.+.++.+-+ .+ |.+.+...-|.-..-....+.
T Consensus 86 ~~~l~~e~~r~~~lG~~~lv~HpG-------~~~~~~~e~~l~~i~~~Ln~~~~~~~--v~i~~e~~agegs~~g~~F~~ 156 (280)
T COG0648 86 IERLIDEIDRCEQLGAKLLVFHPG-------SYLGQGKEEGLNRIAEALNELLEEEG--VIILLENTAGEGSGKGTQFGE 156 (280)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCc-------cccCCCHHHHHHHHHHHHHHHhhccC--CeEEEEEeccccCccccchhh
Confidence 112235788888899998776433 23567789999999999988877 45 444444332211111356778
Q ss_pred HHHHHHHHHHCCcCEEEEcCC-------cCCCcHHHHHHHHHHHHHhCCCc-cEEEEeCCCcCcHHHHHHHHHHcCC--C
Q 012949 305 VAYVAKELHDMGCFEISLGDT-------IGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGI--S 374 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT-------~G~~~P~~v~~li~~l~~~~p~~-~l~vH~Hnd~GlA~ANaLaAl~aGa--~ 374 (452)
+.++.+...+..--.+|| || .|..+++.+.++++.+-+.++-. ...+|+-+- .- ..|. |
T Consensus 157 L~eii~~~~~~~~igvCi-DtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlnds---------k~-~~G~~kD 225 (280)
T COG0648 157 LAEIIDLIEEKERIGVCI-DTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDS---------KY-PLGSNKD 225 (280)
T ss_pred HHHHHHhhcccCceEEEE-EchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCc---------cc-ccccccc
Confidence 888887776654334444 55 67788888999999998887642 234444321 11 2343 3
Q ss_pred EEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949 375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 408 (452)
Q Consensus 375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~ 408 (452)
+ +. -+| .|+...|.+...++..
T Consensus 226 R-H~---~ig--------~G~ig~e~l~~~~~d~ 247 (280)
T COG0648 226 R-HE---NIG--------EGYIGFEALRKILKDF 247 (280)
T ss_pred c-cc---ccC--------CCCCChHHHHHHHhcc
Confidence 2 11 233 4788889999999863
No 348
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=90.57 E-value=24 Score=36.67 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.++.+++|+.|.++|.+.+-.|.| .+|.-.-.+. ++=++.+++ .....+.+++.-.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g--~~gL~~L~~~~~~~Gl~v~tev~----------------- 165 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLG--EEGLKLLAEAREETGLPIVTEVM----------------- 165 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCccccccc--HHHHHHHHHHHHHcCCcEEEeeC-----------------
Confidence 7899999999999999998777654 2332111111 333344433 2223344443211
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
..++++.+.+. ++.+.|... +. ++ ..+++++-+.|.+|- |+. . .-.+
T Consensus 166 -------d~~~~~~l~~~-vd~lqIgAr--~~--------------~N-~~LL~~va~~~kPVi--Lk~----G--~~~t 212 (335)
T PRK08673 166 -------DPRDVELVAEY-VDILQIGAR--NM--------------QN-FDLLKEVGKTNKPVL--LKR----G--MSAT 212 (335)
T ss_pred -------CHHHHHHHHHh-CCeEEECcc--cc--------------cC-HHHHHHHHcCCCcEE--EeC----C--CCCC
Confidence 12367777777 888777543 11 11 144466667788875 332 1 1236
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCC--cCC-CcHHHHHH--HHHHHHHhCCCccE-EEEeCC--CcCcHHHHHHHHHHcCC
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDT--IGV-GTPGTVVP--MLEAVMAVVPVEKL-AVHLHD--TYGQSLPNILISLQMGI 373 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT--~G~-~~P~~v~~--li~~l~~~~p~~~l-~vH~Hn--d~GlA~ANaLaAl~aGa 373 (452)
++.+...++.+...|-+.|.|+.- ..+ -.|....+ .+..+++.+. .|+ ..=.|- ..-+...-+++|+.+||
T Consensus 213 i~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GA 291 (335)
T PRK08673 213 IEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGA 291 (335)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCC
Confidence 888888999999999988888873 122 22233222 3556666554 345 443443 33455678999999999
Q ss_pred C--EEeeccc
Q 012949 374 S--TVDCSVA 381 (452)
Q Consensus 374 ~--~VD~Sv~ 381 (452)
+ .|+.-..
T Consensus 292 dGliIE~H~~ 301 (335)
T PRK08673 292 DGLIVEVHPD 301 (335)
T ss_pred CEEEEEecCC
Confidence 9 7776554
No 349
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.56 E-value=6.1 Score=38.98 Aligned_cols=131 Identities=16% Similarity=0.116 Sum_probs=76.2
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
....+.++|++.|.+..+..-...-.. ...+.++.+..++.+.+.++ ..+|.+. .|..+--+++.+.+.+
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD------~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVAD------LPFGAYGAPTAAFELA 95 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEe------CCCCCCcCHHHHHHHH
Confidence 345566789998887643221111000 13456666666655544332 1344432 3333333668899999
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC------CcC-------------cHHHHHHHHHH
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD------TYG-------------QSLPNILISLQ 370 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn------d~G-------------lA~ANaLaAl~ 370 (452)
+++.++||+.|.|-|.. ++.+.|+.+++.- ++|--|+=- +.| -++.-+.+-.+
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~ 167 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP 167 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence 99999999999999963 4556677777642 334444322 111 34555666678
Q ss_pred cCCCEEee
Q 012949 371 MGISTVDC 378 (452)
Q Consensus 371 aGa~~VD~ 378 (452)
|||+.|=.
T Consensus 168 AGAd~i~~ 175 (240)
T cd06556 168 AGADLIVM 175 (240)
T ss_pred cCCCEEEE
Confidence 88886644
No 350
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.54 E-value=1.9 Score=43.38 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
.++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..++ ++|-+|.-.+..-++..+..|-++|
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999988 45677777888877777643 5666666556677788888899999
Q ss_pred CCEEee
Q 012949 373 ISTVDC 378 (452)
Q Consensus 373 a~~VD~ 378 (452)
|+.+=.
T Consensus 95 ad~v~~ 100 (289)
T cd00951 95 ADGILL 100 (289)
T ss_pred CCEEEE
Confidence 998744
No 351
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=90.49 E-value=18 Score=37.47 Aligned_cols=234 Identities=22% Similarity=0.281 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
+.+..++=+..|.++|.+.+-++- |.+.+++ -+..|++-.++.|.+ . |+ |.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv-------~~~e~A~-A~~~Ik~~~~vPLVa---D----iH----f~---------- 84 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTV-------PDMEAAE-ALKEIKQRLNVPLVA---D----IH----FD---------- 84 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEec-------CCHHHHH-HHHHHHHhCCCCEEE---E----ee----cc----------
Confidence 455566678889999999999974 4443443 344454433433322 1 11 00
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------CC
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GA 299 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~r 299 (452)
.+-.-.+.++|++.+||--. |.|.. +++.++|+.||+.|++++.-+- +|+-+. +.
T Consensus 85 ----~rla~~~~~~g~~k~RINPG--------Nig~~-----~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~ 145 (361)
T COG0821 85 ----YRLALEAAECGVDKVRINPG--------NIGFK-----DRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGG 145 (361)
T ss_pred ----HHHHHHhhhcCcceEEECCc--------ccCcH-----HHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcC
Confidence 01334567789999998532 23221 3788999999999999995443 333221 01
Q ss_pred CCHHHHHH----HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC-cCcHH------HHHHHH
Q 012949 300 IPPSKVAY----VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL------PNILIS 368 (452)
Q Consensus 300 ~d~e~l~~----~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd-~GlA~------ANaLaA 368 (452)
.++|-+++ -++.+.+.|-+.|.+ ++-...|..+.+-.+.|.+... .-+|.==| -|++. +-++.+
T Consensus 146 pt~ealveSAl~~a~~~e~l~f~~i~i--S~K~Sdv~~~v~aYr~lA~~~d---yPLHLGvTEAG~~~~G~VkSa~alg~ 220 (361)
T COG0821 146 PTPEALVESALEHAELLEELGFDDIKV--SVKASDVQLMVAAYRLLAKRCD---YPLHLGVTEAGMGFKGIVKSAAALGA 220 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEE--EEEcCCHHHHHHHHHHHHHhcC---CCcccceecccCcccceehHHHHHHH
Confidence 23444333 456677778764444 3334455555554555555432 12333332 34432 222333
Q ss_pred H-HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHH---HHcCCCCC-C-----------CChhhHHHHHHHHHHHhC
Q 012949 369 L-QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYM---LSGLGVET-N-----------VDLRKLMLAGDFINKHLG 431 (452)
Q Consensus 369 l-~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~---L~~~Gi~t-~-----------iDl~~L~~la~~v~~~~g 431 (452)
| ..|+ |.|-+|+.+ -|+||+... |+.+|+.. + .-.+-+..+.+..++..+
T Consensus 221 LL~eGIGDTIRVSLt~-------------~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~ 287 (361)
T COG0821 221 LLSEGIGDTIRVSLTA-------------DPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEH 287 (361)
T ss_pred HHHhcCCceEEEecCC-------------CchhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhc
Confidence 3 4664 688888874 236766543 44444431 1 223334455566666678
Q ss_pred CCCCCCcccccchh
Q 012949 432 RPSGSKTAIALNRI 445 (452)
Q Consensus 432 ~~~p~~~pi~G~~v 445 (452)
.+.|-+.++.|.-|
T Consensus 288 ~~~pl~VAVMGCVV 301 (361)
T COG0821 288 LKTPLKVAVMGCVV 301 (361)
T ss_pred cCCCceEEEEEeEe
Confidence 88888888887543
No 352
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.43 E-value=6.5 Score=35.90 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=49.8
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
.+++|++..++.|.+.. .+- .....+..+++.+|+.|..-.. + .. .+-.+++. ...
T Consensus 55 ~v~aA~~~dv~vIgvSs-l~g------------~h~~l~~~lve~lre~G~~~i~-v--~~----GGvip~~d----~~~ 110 (143)
T COG2185 55 AVRAAVEEDVDVIGVSS-LDG------------GHLTLVPGLVEALREAGVEDIL-V--VV----GGVIPPGD----YQE 110 (143)
T ss_pred HHHHHHhcCCCEEEEEe-ccc------------hHHHHHHHHHHHHHHhCCcceE-E--ee----cCccCchh----HHH
Confidence 44556677777777653 222 3456677888999999986331 1 12 23344554 556
Q ss_pred HHHCCcCEEEEcCCcCCCcHHHHHHHHHHH
Q 012949 312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAV 341 (452)
Q Consensus 312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l 341 (452)
+.++|+++|.-+.| -..+-+..+++.+
T Consensus 111 l~~~G~~~if~pgt---~~~~~~~~v~~~l 137 (143)
T COG2185 111 LKEMGVDRIFGPGT---PIEEALSDLLTRL 137 (143)
T ss_pred HHHhCcceeeCCCC---CHHHHHHHHHHHH
Confidence 78899999998865 2333444444443
No 353
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=90.41 E-value=11 Score=36.24 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHH----hcc----CCceeEEecchhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR----DLE----GARLPVLTPNLKVILQRSILF 214 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~----~~~----~~~l~~l~~~~~~~i~r~~~~ 214 (452)
.++.+..++=++.+.+.|-++|++|.-+ .|.. .. -+.++.++.+. .+. ++.++.=+++
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~-~~-v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~----------- 81 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGA-TP-VSEEEEMERLVPVLQAIREENPDVPLSIDTFN----------- 81 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTS-SS-SHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-----------
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCC-Cc-CCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-----------
Confidence 3556666677999999999999999654 2321 11 23334444433 332 3333321222
Q ss_pred hhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC
Q 012949 215 QQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 294 (452)
Q Consensus 215 ~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~ 294 (452)
.+-+++|++.|++.|.-..+..+ ..++++.+++.|..+. +++.-+.
T Consensus 82 ---------------~~v~~~aL~~g~~~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~ 127 (210)
T PF00809_consen 82 ---------------PEVAEAALKAGADIINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGN 127 (210)
T ss_dssp ---------------HHHHHHHHHHTSSEEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSE
T ss_pred ---------------HHHHHHHHHcCcceEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccc
Confidence 23678888889997765554321 2355677888888765 4544322
Q ss_pred CCCCCCCH----HHHHHHHHH-------HHHCCc--CEEEEcCCcCCC-cHHHHHHHHHHHH
Q 012949 295 PVEGAIPP----SKVAYVAKE-------LHDMGC--FEISLGDTIGVG-TPGTVVPMLEAVM 342 (452)
Q Consensus 295 p~~~r~d~----e~l~~~a~~-------l~~~Ga--d~I~L~DT~G~~-~P~~v~~li~~l~ 342 (452)
|..-..++ +.+.++.+. +.++|+ +.|.+==-+|.. ++.+-.++++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 128 PKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp TTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 32222222 223333333 444898 688873344442 2445555555444
No 354
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.37 E-value=15 Score=36.05 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=84.4
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhc-CCCHHHHH------HHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSL------VRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP 302 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~-~~s~e~~l------~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~ 302 (452)
+.++...++|+|.+++-++-||....-.+ ....+.+| +...+.++..|+. .+++. +|.-+ .|.-
T Consensus 18 ~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~--lm~y~-n~~~----- 89 (242)
T cd04724 18 EILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV--LMGYY-NPIL----- 89 (242)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE--EEEec-CHHH-----
Confidence 36777888999999998777764322111 00011222 2445566777754 45543 43211 1110
Q ss_pred HH-HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 303 SK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 303 e~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
.+ +.++++.+.++|++.|.++|- .|++..++++.++++-. ...+=+-.+.-......+.....|.-++=+.-.
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~--~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGL--DLIFLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence 11 356788889999999999995 57888888888887532 222222222222222222222233333323333
Q ss_pred CCCCCCCCCCCCC-cccHHHHHHHHHc
Q 012949 382 GLGGCPYAKGASG-NVATEDVVYMLSG 407 (452)
Q Consensus 382 GlGecP~a~graG-NaalE~vv~~L~~ 407 (452)
|-|+ .++ ...+.+.+..++.
T Consensus 164 ~tG~------~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 164 VTGA------RTELPDDLKELIKRIRK 184 (242)
T ss_pred CCCC------ccCCChhHHHHHHHHHh
Confidence 4444 443 3557777777775
No 355
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.37 E-value=1.9 Score=43.25 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQMG 372 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~aG 372 (452)
+..|.+-+.++++.+.+.|++.|.++-|+| .+++++-.++++.+++..++ .+|-+|. +++..-++..+..|-++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 568889999999999999999999999998 67888888888888887754 4566654 668888899999999999
Q ss_pred CCEEeeccc
Q 012949 373 ISTVDCSVA 381 (452)
Q Consensus 373 a~~VD~Sv~ 381 (452)
++.|=..--
T Consensus 97 ~d~v~~~pP 105 (292)
T PRK03170 97 ADGALVVTP 105 (292)
T ss_pred CCEEEECCC
Confidence 998776543
No 356
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.33 E-value=2.4 Score=45.51 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
+..+-++.+.++|++.|.+ |+.-..+ ..+.+.|+.+++.+|+.+|.. -..+-...+..++++||+.|.+++.
T Consensus 224 ~~~~r~~~L~~aG~d~I~v-d~a~g~~-~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVI-DSSHGHS-IYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEE-ECCCCcH-hHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence 4445667889999999988 5544333 468889999999998877766 3345567888999999999999764
No 357
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.32 E-value=6.9 Score=40.18 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
++..+.++.|.++|++.|++.+.. .+. ...+.++.+++... .+.+++.+..
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~------~~~~~i~~ik~~~p-~v~Vi~G~v~--------------------- 144 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSV------YVIEMIKFIKKKYP-NVDVIAGNVV--------------------- 144 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcH------HHHHHHHHHHHHCC-CceEEECCCC---------------------
Confidence 445678888999999999986422 111 12334444443211 2333332221
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
+.++.+.+.++|+|.|.+-...--.+... ..+..+. .+..+.++.+++++.+++|. .+.+-.++..+
T Consensus 145 --t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVI---------A~GGI~~~~di 212 (325)
T cd00381 145 --TAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVI---------ADGGIRTSGDI 212 (325)
T ss_pred --CHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEE---------ecCCCCCHHHH
Confidence 33578889999999998732210001011 1111111 23445566677777787764 13444455554
Q ss_pred HHHHHHHHHCCcCEEEEc
Q 012949 306 AYVAKELHDMGCFEISLG 323 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~ 323 (452)
.+. + .+||+.+.+.
T Consensus 213 ~kA---l-a~GA~~VmiG 226 (325)
T cd00381 213 VKA---L-AAGADAVMLG 226 (325)
T ss_pred HHH---H-HcCCCEEEec
Confidence 433 3 4899988773
No 358
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=90.31 E-value=9 Score=40.14 Aligned_cols=145 Identities=20% Similarity=0.112 Sum_probs=88.2
Q ss_pred HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-CC--cEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SI--PVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G~--~V~~~l~~~~g~p~~ 297 (452)
+..++|+++|.|.|.|..+ .|+..++. .+|-|.|+=+....++++.+|+. |. .|..-|+..- ....
T Consensus 153 ~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d-~~~~ 231 (363)
T COG1902 153 RAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDD-FFDG 231 (363)
T ss_pred HHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc-cCCC
Confidence 4566788899999988532 23333333 36778898888888988888874 43 3554455321 1122
Q ss_pred CCCCHHHHHHHHHHHHHCC-cCEEEEcCCcC----CCc---HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMG-CFEISLGDTIG----VGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 369 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G----~~~---P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl 369 (452)
.-.+++...++++.+.+.| +|.|.+.--.- ... |.......+.+++... +++. +. ........+..++
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pvi-~~--G~i~~~~~Ae~~l 307 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPVI-AV--GGINDPEQAEEIL 307 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCEE-Ee--CCCCCHHHHHHHH
Confidence 2457889999999999999 68776643221 111 2233345555666543 2221 11 1244566778889
Q ss_pred HcC-CCEEeecccCCCC
Q 012949 370 QMG-ISTVDCSVAGLGG 385 (452)
Q Consensus 370 ~aG-a~~VD~Sv~GlGe 385 (452)
+.| ||.| |+|.
T Consensus 308 ~~g~aDlV-----a~gR 319 (363)
T COG1902 308 ASGRADLV-----AMGR 319 (363)
T ss_pred HcCCCCEE-----Eech
Confidence 998 6654 5665
No 359
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=90.28 E-value=21 Score=37.24 Aligned_cols=232 Identities=24% Similarity=0.248 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
-+.+.-++=++.|.++|.+.+-+.. |.+.+++ -+..+++..++.+.+ . |+ |
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav-------~~~~~a~-al~~I~~~~~iPlvA---D----IH----F---------- 89 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAV-------PDMEAAA-ALPEIKKQLPVPLVA---D----IH----F---------- 89 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcc-------CCHHHHH-hHHHHHHcCCCCEEE---e----cC----C----------
Confidence 3455666678889999999999975 4333333 334444322333222 1 11 0
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------C
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------G 298 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~ 298 (452)
..+-.-.|++.|++.|||--. |++. .-+++.++++.||++|+.++.-+- .|+-.. +
T Consensus 90 ----d~~lAl~a~~~G~~~iRINPG--------Nig~----~~~~v~~vv~~ak~~~ipIRIGvN--~GSL~~~~~~~yg 151 (360)
T PRK00366 90 ----DYRLALAAAEAGADALRINPG--------NIGK----RDERVREVVEAAKDYGIPIRIGVN--AGSLEKDLLEKYG 151 (360)
T ss_pred ----CHHHHHHHHHhCCCEEEECCC--------CCCc----hHHHHHHHHHHHHHCCCCEEEecC--CccChHHHHHHcC
Confidence 011334577889999998432 2321 125677899999999999984443 232211 1
Q ss_pred CCCHHHHH----HHHHHHHHCCcCE--EEEcCCcCCCcHHHHHHHHHHHHHhC--CCccEEEEeCCCcCcHHHH---HHH
Q 012949 299 AIPPSKVA----YVAKELHDMGCFE--ISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPN---ILI 367 (452)
Q Consensus 299 r~d~e~l~----~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~li~~l~~~~--p~~~l~vH~Hnd~GlA~AN---aLa 367 (452)
..+++-++ +.++.+.+.|-+. |+++.| .+..+-+-.+.+.+.. |- .|++-=--+.-.++-. .+.
T Consensus 152 ~~t~eamveSAl~~~~~le~~~f~~iviS~KsS----~v~~~i~ayrlla~~~dyPL-HlGvTEAG~~~~G~iKSa~gig 226 (360)
T PRK00366 152 EPTPEALVESALRHAKILEELGFDDIKISVKAS----DVQDLIAAYRLLAKRCDYPL-HLGVTEAGMGFKGTVKSAAGLG 226 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----CHHHHHHHHHHHHhcCCCCc-eecccCCCCCCCceehhHHHHH
Confidence 12344333 3556777888764 444443 4544444444444443 31 2222111122222222 222
Q ss_pred HH-HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHHH---HcCCCC--------------CCCChhhHHHHHHHHHH
Q 012949 368 SL-QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVE--------------TNVDLRKLMLAGDFINK 428 (452)
Q Consensus 368 Al-~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~L---~~~Gi~--------------t~iDl~~L~~la~~v~~ 428 (452)
+| ..|+ |.|-+|+.+ .|.||+-.+. +.+|+. +.+|+ ..++..+++
T Consensus 227 ~LL~~GIGDTiRVSLt~-------------~P~~EV~va~~IL~slglr~~g~~IisCPgCgR~~~D~---~~la~~vee 290 (360)
T PRK00366 227 ALLQEGIGDTIRVSLTA-------------DPVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDV---IQELAEVEQ 290 (360)
T ss_pred HHHHhcCCCeEEEeCCC-------------CCHHHHHHHHHHHHHcCCccCCCeEEECCCCCCCcccH---HHHHHHHHH
Confidence 32 4564 678888873 3577776543 334432 12333 334444444
Q ss_pred H-hCCCCCCCcccccch
Q 012949 429 H-LGRPSGSKTAIALNR 444 (452)
Q Consensus 429 ~-~g~~~p~~~pi~G~~ 444 (452)
. .+.+.|-+.++.|.-
T Consensus 291 ~~~~~~~PlkIAVmGC~ 307 (360)
T PRK00366 291 RLEHIKMPLKVAVMGCV 307 (360)
T ss_pred HhcCCCCCcEEEEeCCC
Confidence 4 488888887877763
No 360
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.27 E-value=5.5 Score=43.35 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
.++ .+.++.|.++|++.|++....... ....+.++.+++. +++.+ ++-+.
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a~G~s-----~~~~~~i~~ik~~~~~~~v--~aG~V--------------------- 290 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSSQGNS-----IYQIDMIKKLKSNYPHVDI--IAGNV--------------------- 290 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecCCCCc-----hHHHHHHHHHHhhCCCceE--EECCc---------------------
Confidence 344 899999999999999997531100 1122344445432 33332 22221
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+.++++.++++|+|.|.+-... |--..+...++... .+..+.++.+.+++.|+++. ++.+-.++.+
T Consensus 291 --~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~d 358 (495)
T PTZ00314 291 --VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRP-QASAVYHVARYARERGVPCI---------ADGGIKNSGD 358 (495)
T ss_pred --CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCC-hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHH
Confidence 13468899999999999875421 10000111222222 23455677788888897764 2445445544
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHHH
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI 367 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaLa 367 (452)
+.+ +..+||+.+.+.-. +..- .+.|...+ +-....-+|||...++.
T Consensus 359 i~k----Ala~GA~~Vm~G~~------------~a~~-~e~~~~~~~~~g~~~k~yrGm~s~~a~~ 407 (495)
T PTZ00314 359 ICK----ALALGADCVMLGSL------------LAGT-EEAPGEYFFKDGVRLKVYRGMGSLEAML 407 (495)
T ss_pred HHH----HHHcCCCEEEECch------------hccc-cccCCceeeeCCeEEEEEeccchHHHhh
Confidence 443 34489999988543 1111 12343211 23455578999766554
No 361
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.23 E-value=12 Score=39.14 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=87.1
Q ss_pred HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCC-
Q 012949 231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV- 296 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~- 296 (452)
+..+.|+++|.|.|.|-..- |+.. .....|-|.++=.+.+.++++.+|+. | +.|.+-++..-+.+.
T Consensus 148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 35567778999998886432 2322 23346778898888889999998885 4 445544542100111
Q ss_pred -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-CCcHH---HHHHHHHHHHHhCCCccEEEEeCCCc-------------
Q 012949 297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPG---TVVPMLEAVMAVVPVEKLAVHLHDTY------------- 358 (452)
Q Consensus 297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~---~v~~li~~l~~~~p~~~l~vH~Hnd~------------- 358 (452)
.+-.+++...++++.+.++|+|.|.+.- | ...|. .-..+.+.+++.++. ++....--+.
T Consensus 228 ~~~g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~~-pv~~~G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 228 ARLADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTGL-PTITVGSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcCC-CEEEECCcccccccccccccccc
Confidence 1125778889999999999999887732 2 11221 123455667776653 5555443211
Q ss_pred --CcHHHHHHHHHHcC-CCEE
Q 012949 359 --GQSLPNILISLQMG-ISTV 376 (452)
Q Consensus 359 --GlA~ANaLaAl~aG-a~~V 376 (452)
-.....+..+++.| ||.|
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLV 325 (361)
T ss_pred cccCCHHHHHHHHHCCCCCee
Confidence 12456777888877 6764
No 362
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=90.22 E-value=11 Score=36.93 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=53.2
Q ss_pred HHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHH
Q 012949 235 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 314 (452)
Q Consensus 235 ~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~ 314 (452)
+++--+ ..|.++.+..+. +....++-+..+.++.+. ..+|+. .+.+.+.+.++.+.+
T Consensus 120 ~al~~~-~~vGVivP~~eQ----------------~~~~~~kW~~l~~~~~~a----~asPy~--~~~~~l~~Aa~~L~~ 176 (221)
T PF07302_consen 120 AALVGG-HQVGVIVPLPEQ----------------IAQQAEKWQPLGNPVVVA----AASPYE--GDEEELAAAARELAE 176 (221)
T ss_pred HHhcCC-CeEEEEecCHHH----------------HHHHHHHHHhcCCCeEEE----EeCCCC--CCHHHHHHHHHHHHh
Confidence 334344 889999987552 223334445566666532 235664 267899999999999
Q ss_pred CCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949 315 MGCFEISLGDTIGVGTPGTVVPMLEA 340 (452)
Q Consensus 315 ~Gad~I~L~DT~G~~~P~~v~~li~~ 340 (452)
.|+|.|.| |-+|+.. +.+++++.
T Consensus 177 ~gadlIvL-DCmGYt~--~~r~~~~~ 199 (221)
T PF07302_consen 177 QGADLIVL-DCMGYTQ--EMRDIVQR 199 (221)
T ss_pred cCCCEEEE-ECCCCCH--HHHHHHHH
Confidence 99999999 9999854 34444443
No 363
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.13 E-value=4 Score=41.33 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CCc
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGT 330 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~ 330 (452)
+.++.++.+.++.+. ..++|.+-+- .+--++..+.+.++.+.++|+..|.|-|.++ +..
T Consensus 57 t~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~ 126 (285)
T TIGR02317 57 TLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVS 126 (285)
T ss_pred CHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccC
Confidence 566777766555433 4677764443 2333578889999999999999999999873 346
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEeC------CCcCcHHHHHHHHHHcCCCEEe
Q 012949 331 PGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 331 P~~v~~li~~l~~~~p~~~l~vH~H------nd~GlA~ANaLaAl~aGa~~VD 377 (452)
+++....|++.++...+.++-+=.- ..+--|+.-+.+..+||||.|=
T Consensus 127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIF 179 (285)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence 6777777888877543323333222 2344677888888999999653
No 364
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=90.13 E-value=2.9 Score=43.25 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCC-CcHHHHHHHHHHHHHhCCCccEEEEeC---------CCcCcHHHHHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS 368 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH~H---------nd~GlA~ANaLaA 368 (452)
+.++|.+.+.++.+.+.|+.+|.|.+.... ...+.+.++++.+++++|. +.+|+- +-.|+-....+..
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 358999999999999999999999743222 2336889999999999986 444432 3468877787776
Q ss_pred H-HcCCCEEe
Q 012949 369 L-QMGISTVD 377 (452)
Q Consensus 369 l-~aGa~~VD 377 (452)
+ +||++.+.
T Consensus 156 LkeAGld~~~ 165 (351)
T TIGR03700 156 LKEAGLDSMP 165 (351)
T ss_pred HHHcCCCcCC
Confidence 6 58998776
No 365
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=90.09 E-value=15 Score=37.93 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhcc--CCce-eEEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLE--GARL-PVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~--~~~l-~~l~~~~~~~i~r~~~~~~~ 217 (452)
.++.+...++++.+.+.+.....+.+... .|-+.. ..++++.+++.. +..+ ..++.|.- +
T Consensus 38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~-l---------- 103 (370)
T PRK13758 38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGT-L---------- 103 (370)
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCE-e----------
Confidence 47788888888776555444445554432 244432 235566665532 2222 12332221 0
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 296 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~ 296 (452)
...+-++...+.++ .|.|.+-. .+.|............++++.+.++.+++.|+++.+. +++
T Consensus 104 ----------l~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~--~~v---- 166 (370)
T PRK13758 104 ----------IDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNIL--CVV---- 166 (370)
T ss_pred ----------cCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEE--EEe----
Confidence 11234555666775 77776543 3333221110112356777788888888888876533 223
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEc---CCcC--------CCcHHHHHHHHHHHHH
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLG---DTIG--------VGTPGTVVPMLEAVMA 343 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~---DT~G--------~~~P~~v~~li~~l~~ 343 (452)
++.+.+.+.++++.+.+.|++.+.+. +..| .++|.+..+++..+.+
T Consensus 167 -~~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~ 223 (370)
T PRK13758 167 -TSNTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD 223 (370)
T ss_pred -ccccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence 23345567777888888999877552 2222 3577777776666554
No 366
>PRK06801 hypothetical protein; Provisional
Probab=90.09 E-value=3.3 Score=41.93 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcHHHHHHHHHHHHHhCC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.... .+..+..+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 356778999999988752 31 23678888999999998876 45554433 33455778888888888876
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 383 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 383 (452)
. |+.+|. |.|.-+.....|+++|++ ++|+|-..+
T Consensus 75 v-pV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l~~ 110 (286)
T PRK06801 75 I-PVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTLEY 110 (286)
T ss_pred C-CEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCCCH
Confidence 4 677766 557778899999999999 456665543
No 367
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.07 E-value=9.8 Score=40.38 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.++.++=++.|.+.|++.|-+.... .....+......++++.+..+++. ++....|..
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~------------- 218 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKD------------- 218 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhh-------------
Confidence 5788999999999999999988876321 111011111345566666554332 221111210
Q ss_pred cchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~ 292 (452)
...+-++...+. +...+++.+ +.||.-++. .|+. ...+.+.++++.+++. |+.+.++++ +
T Consensus 219 ----------i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~pgi~i~~d~I--v 283 (418)
T PRK14336 219 ----------ISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAA-MRRG--YTNQQYRELVERLKTAMPDISLQTDLI--V 283 (418)
T ss_pred ----------cCHHHHHHHHhcCccCCceecCCCcCCHHHHHH-hCCC--CCHHHHHHHHHHHHhhCCCCEEEEEEE--E
Confidence 012344555553 477777765 445544432 2322 2245556777888887 888877776 5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 284 GfPGET---~edf~~tl~fi~~~~~~~~~ 309 (418)
T PRK14336 284 GFPSET---EEQFNQSYKLMADIGYDAIH 309 (418)
T ss_pred ECCCCC---HHHHHHHHHHHHhcCCCEEE
Confidence 667664 56777777777777776654
No 368
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.05 E-value=7.9 Score=41.25 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.+..++-++.|.+.|++.|.+... ..++.... ....++++.+.+..+. ++....|..
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~------------- 239 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRD------------- 239 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCccc-------------
Confidence 468888888889998899998887521 11111110 1345566666544332 221111110
Q ss_pred cchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~ 292 (452)
...+-++...++ |...|++.+ +.|+.-++ .+|+. ...+.+.++++.+|+. |+.+.++++ +
T Consensus 240 ----------l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--v 304 (437)
T PRK14331 240 ----------LDEDIIKAMADIPQVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--V 304 (437)
T ss_pred ----------CCHHHHHHHHcCCccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--E
Confidence 122355666666 478888865 55654443 23432 2344555677888887 888877666 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 305 G~PgET---~ed~~~tl~~l~~l~~~~i~~ 331 (437)
T PRK14331 305 GFPTET---EEDFEETLDVLKKVEFEQVFS 331 (437)
T ss_pred ECCCCC---HHHHHHHHHHHHhcCcceeee
Confidence 777764 577777777778888765443
No 369
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=90.05 E-value=5 Score=40.48 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCc-HHHHHHHHHHHHHhCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGT-PGTVVPMLEAVMAVVP 346 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~-P~~v~~li~~l~~~~p 346 (452)
+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+...|--.-.. .+.. ...+..++..+.++++
T Consensus 4 ~~~~l~~A~~~~yav~A-----fn-----~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGA-----FN-----FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 45677899999987752 21 2367888889999999887755443222 2222 4567788888888876
Q ss_pred CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 012949 347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG 384 (452)
Q Consensus 347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG 384 (452)
.+|+.+|. |-|.-+.....|+++|++ ++|.+-..+-
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~ 111 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHLPFE 111 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCCCHH
Confidence 35888884 444567889999999998 4566655443
No 370
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.03 E-value=20 Score=35.53 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=93.0
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHH----------hh-hcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFS----------KS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~----------~~-~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~ 297 (452)
+-++...+.|+|.|-+-+|-||... ++ +-|.+.++.+ +.++..|+. .+++. .+++ + .|..
T Consensus 28 ~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv-~m~Y-~-Npi~ 100 (256)
T TIGR00262 28 EIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG-LLTY-Y-NLIF 100 (256)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE-EEEe-c-cHHh
Confidence 3566777899999999998888321 11 2344444444 344555543 55543 3333 2 2211
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
.+ =+.++++.+.++|++.|.+.|- .+++..++++.+++.- ..+.+=+-.+.-..-...+++...|.-++=
T Consensus 101 -~~---G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~g--l~~i~lv~P~T~~eri~~i~~~~~gfiy~v 170 (256)
T TIGR00262 101 -RK---GVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHG--VKPIFLVAPNADDERLKQIAEKSQGFVYLV 170 (256)
T ss_pred -hh---hHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCC--CcEEEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 11 2346778889999999999995 5678888888888752 234444444444455556666666666654
Q ss_pred ecccCCCCCCCCCCCC--CcccHHHHHHHHHc
Q 012949 378 CSVAGLGGCPYAKGAS--GNVATEDVVYMLSG 407 (452)
Q Consensus 378 ~Sv~GlGecP~a~gra--GNaalE~vv~~L~~ 407 (452)
+ +.|..+ .. =+.++.+.+..++.
T Consensus 171 s-~~G~TG------~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 171 S-RAGVTG------ARNRAASALNELVKRLKA 195 (256)
T ss_pred E-CCCCCC------CcccCChhHHHHHHHHHh
Confidence 4 457665 32 23567777777775
No 371
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=89.98 E-value=3.3 Score=44.47 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
+.-.+-+..|.++|++.|++-.... +.+.+++.++.+.. ..+.+++-+.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g--------~~~~~~~~i~~i~~~~~~~~vi~G~v--------------------- 273 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHG--------HSIYVIDSIKEIKKTYPDLDIIAGNV--------------------- 273 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCC--------cHhHHHHHHHHHHHhCCCCCEEEEeC---------------------
Confidence 4456677799999999999975321 22233444443211 1233333121
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
.+.++.+.++++|+|.|.+..+.- =-..+...++... .+..+.++.+++++.+++|. ++.+-.++.+
T Consensus 274 --~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvi---------adGGi~~~~d 341 (450)
T TIGR01302 274 --ATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVI---------ADGGIRYSGD 341 (450)
T ss_pred --CCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEE---------EeCCCCCHHH
Confidence 134688999999999998864211 0001111233333 24555677788888888764 1344444544
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHHH
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI 367 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaLa 367 (452)
+.+ +.++||+.+.+.- ++..- ++.|...+ +-+.-.-+||+...++.
T Consensus 342 i~k----Ala~GA~~V~~G~------------~~a~~-~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 342 IVK----ALAAGADAVMLGS------------LLAGT-TESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred HHH----HHHcCCCEEEECc------------hhhcC-CcCCCceEEECCEEEEEEeccchHHHHh
Confidence 443 3457999998865 33332 33565322 23444568999766553
No 372
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=89.93 E-value=9.3 Score=43.76 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=85.8
Q ss_pred HHhHHHHHHcCCCEEEEEec--------CChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCC
Q 012949 230 LQGFEAAIAAGAKEVAIFAS--------ASEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV 296 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s--------~Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~ 296 (452)
.+..++|+++|.|.|.|-.. .|+..+ ...+|-|.|+=++.+.++++.+|+. | +.|.+-|+.. + ..
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~-~-~~ 631 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH-D-WV 631 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc-c-cc
Confidence 34556677899999988654 255432 3346778888888888888888884 3 4555445421 0 01
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--------HHHHHHHHHHHHhCCCccEEEE-eCCCcCcHHHHHHH
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--------GTVVPMLEAVMAVVPVEKLAVH-LHDTYGQSLPNILI 367 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--------~~v~~li~~l~~~~p~~~l~vH-~Hnd~GlA~ANaLa 367 (452)
.+-.+++...++++.+.++|+|.|.+. .|...+ .....+.+.+|+.+.. +|..- -.++ ...+..
T Consensus 632 ~~g~~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~i~~----~~~a~~ 704 (765)
T PRK08255 632 EGGNTPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAGI-ATIAVGAISE----ADHVNS 704 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcCC-EEEEeCCCCC----HHHHHH
Confidence 223567888899999999999999884 221111 1123456677777653 44332 2222 355677
Q ss_pred HHHcC-CCEEe
Q 012949 368 SLQMG-ISTVD 377 (452)
Q Consensus 368 Al~aG-a~~VD 377 (452)
+++.| +|.|-
T Consensus 705 ~l~~g~~D~v~ 715 (765)
T PRK08255 705 IIAAGRADLCA 715 (765)
T ss_pred HHHcCCcceee
Confidence 77766 66553
No 373
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=89.90 E-value=6.5 Score=35.99 Aligned_cols=119 Identities=11% Similarity=0.024 Sum_probs=65.9
Q ss_pred HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCC------HH
Q 012949 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIP------PS 303 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d------~e 303 (452)
++.+.++|.+.|.+......... +.-..+.++.+.+++.|+++............. .... .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~---------~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD---------EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT---------HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccc---------cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 45678899999988764222110 002456677788899999865322222211111 1122 56
Q ss_pred HHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCC-----CccEEEEeCCCcCc
Q 012949 304 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVP-----VEKLAVHLHDTYGQ 360 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p-----~~~l~vH~Hnd~Gl 360 (452)
.+.+.++.+..+|++.+.+. .............+++.+++..+ ++.|.++.|.....
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 77778888888899988876 22233333444444444443221 34566666665543
No 374
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.87 E-value=9.1 Score=38.91 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=64.0
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
-++..++.|++.|-+.-+..|.+ ..|.+|-.+.++.+++.++ -.++|.+.+. ..+.+...++++.
T Consensus 34 lv~~li~~Gv~Gi~v~GstGE~~-----~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~---------~~~t~~ai~~a~~ 98 (309)
T cd00952 34 LVERLIAAGVDGILTMGTFGECA-----TLTWEEKQAFVATVVETVA-GRVPVFVGAT---------TLNTRDTIARTRA 98 (309)
T ss_pred HHHHHHHcCCCEEEECcccccch-----hCCHHHHHHHHHHHHHHhC-CCCCEEEEec---------cCCHHHHHHHHHH
Confidence 56777788999888877777753 3566776666656665543 2344442222 2345777788888
Q ss_pred HHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949 312 LHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 312 l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p 346 (452)
+.++|+|.+.+.=. .-..+++.+.+.++.+.+..|
T Consensus 99 A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 99 LLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred HHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 88888886655433 333456777777777777653
No 375
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.86 E-value=12 Score=39.69 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
..+.++.++=++.|.+.|++.|.+... ..........+..++++.+..+.+.....+. .. .+..
T Consensus 168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~-~~------------~p~~ 234 (434)
T PRK14330 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFL-TS------------YPTD 234 (434)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEe-cC------------Chhh
Confidence 467888888888898999998876421 1000011011334455555444443211111 00 0010
Q ss_pred hhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCC
Q 012949 221 VISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCP 295 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p 295 (452)
...+-++.+.++| ...+++.+ +.||--++ ..|+. ...+.+.++++.+++. |+.+.++++ +|.|
T Consensus 235 -------~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk-~M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfP 302 (434)
T PRK14330 235 -------FSDELIEVIANSPKVAKSIHLPVQSGSNRILK-LMNRR--YTREEYLELIEKIRSKVPDASISSDII--VGFP 302 (434)
T ss_pred -------cCHHHHHHHhcCCcccCceecCcCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECC
Confidence 1223556666666 56777766 45564433 33443 2345666778888886 666776665 6778
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 296 VEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 296 ~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
.++ .+.+.+.++.+.+.+.+.+.
T Consensus 303 gET---~edf~~tl~fi~~~~~~~~~ 325 (434)
T PRK14330 303 TET---EEDFMETVDLVEKAQFERLN 325 (434)
T ss_pred CCC---HHHHHHHHHHHHhcCCCEEe
Confidence 764 57777788888888877665
No 376
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.85 E-value=7.5 Score=37.03 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=76.1
Q ss_pred hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
..+.+.++|++.|.|-.+. +....+...|.+.+.-.+.+.++++..++. ++.+.+-+...+ . +.+...+++
T Consensus 72 aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~---~----~~~~~~~~~ 144 (231)
T cd02801 72 AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW---D----DEEETLELA 144 (231)
T ss_pred HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc---C----CchHHHHHH
Confidence 5567778899988875432 122223335555555566666777777653 445543333211 1 114788899
Q ss_pred HHHHHCCcCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEeec
Q 012949 310 KELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDCS 379 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD~S 379 (452)
+.+.++|++.|.+-+-... ..+..-.+.++.+++... ++|..-. +.. ....+..+++. ||+.|-.+
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~G--gi~-~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIANG--DIF-SLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEeC--CCC-CHHHHHHHHHhcCCCEEEEc
Confidence 9999999999988654321 111123455666766433 3444422 111 23455566666 67766443
No 377
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.84 E-value=1.8 Score=40.89 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE--EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA--VHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~--vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
..+++...++++.+ +-|++.|-+ +.-..+|.. .+.|+.+++.+|+..+. +|.+ |-| .-.+..+.++||+.|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence 45788999999999 778887776 222333333 57788999888754444 4555 333 225677899999988
Q ss_pred eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCC
Q 012949 377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 415 (452)
Q Consensus 377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iD 415 (452)
-.-. + +++..+++++...+++|+...++
T Consensus 81 ~vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLG----V-------ADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 5332 1 12334566777777666665533
No 378
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=89.83 E-value=11 Score=39.12 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC--CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV--SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~--s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++.+.-++-.+...+.-=+-+|+=... -|-..|-+ .++++.++.++++.+..+-.+.- +
T Consensus 140 ~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~-~-------------- 201 (414)
T COG2100 140 VVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGV-L-------------- 201 (414)
T ss_pred EecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCce-e--------------
Confidence 4778888888888888777777875432 23233433 56788888877766544432221 0
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 301 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d 301 (452)
...+-+++..++|+|+|.+.+.+=|...-..+---....++.+.++++++.+.|+.|- |+-++ ---.+
T Consensus 202 ------L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvl--IaPv~----lPG~N 269 (414)
T COG2100 202 ------LSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVL--IAPVW----LPGVN 269 (414)
T ss_pred ------ccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEE--Eeeee----cCCcC
Confidence 1235778888999999999986655433333322234567888889999999999875 33222 11245
Q ss_pred HHHHHHHHHHHHHCCcC--------EEEEcCCcCC----CcH---HHHHHHHHHHHHhCC
Q 012949 302 PSKVAYVAKELHDMGCF--------EISLGDTIGV----GTP---GTVVPMLEAVMAVVP 346 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad--------~I~L~DT~G~----~~P---~~v~~li~~l~~~~p 346 (452)
.+.+.++++.+.+.||- .-++.=-.|- ..| .+++..++.+-+++.
T Consensus 270 D~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg 329 (414)
T COG2100 270 DDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETG 329 (414)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhC
Confidence 56777788888877651 2333333332 222 456666666666654
No 379
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.80 E-value=17 Score=36.69 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE---c-CC---cC-----CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISL---G-DT---IG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L---~-DT---~G-----~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa 367 (452)
.+++.+.++++.+.++|+|.|.| | .+ -| ...|+.+.++++.+++... +||.+-..-+.---..-+.+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence 46789999999999899997777 2 22 11 1469999999999998764 46777766544333344455
Q ss_pred HHHcCCCEEe
Q 012949 368 SLQMGISTVD 377 (452)
Q Consensus 368 Al~aGa~~VD 377 (452)
+.++||+.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 6789999664
No 380
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=89.76 E-value=2.7 Score=45.68 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=71.7
Q ss_pred HHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++.+.++|+.+|.|-... ++-.+ ..+|+. ...+.+.++++.+|+.|+ .+...++ +|.|.. +.+.+.+
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vL-k~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~ 340 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETL-KAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKH 340 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHH-HHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHH
Confidence 467888999999999987744 44333 334442 334555677899999999 5666665 677765 4688888
Q ss_pred HHHHHHHCCcCEEEEcCC--------------cCCCcHHHHHHHHHHHHHh
Q 012949 308 VAKELHDMGCFEISLGDT--------------IGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~DT--------------~G~~~P~~v~~li~~l~~~ 344 (452)
.++.+.+.+++.|.+--. .....++...+++....+.
T Consensus 341 tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 341 TLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence 899999999987775422 2333455555555555544
No 381
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=89.76 E-value=22 Score=35.12 Aligned_cols=235 Identities=15% Similarity=0.098 Sum_probs=129.6
Q ss_pred cEEEeCCccccCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeE
Q 012949 127 VKIVEVGPRDGLQNEKN---TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPV 199 (452)
Q Consensus 127 V~I~D~TLRDG~Q~~~~---~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~ 199 (452)
++|-+.++-.|.-..-. .-+.++.++-++.+.+.|+|.||+-...-.. +.+.+.+.+.++.+ .+..+-+
T Consensus 4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~~~~~~~~l~~~~~~~PiI~ 79 (253)
T PRK02412 4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK----ISDVESVLAAAPAIREKFAGKPLLF 79 (253)
T ss_pred eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc----cCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 44555555333221111 2345666666777788899999997542111 12233444433322 2222222
Q ss_pred EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949 200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 278 (452)
Q Consensus 200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak 278 (452)
-++...+ . |-....++ .+.+-++.+++.| ++.|.|-....+ +.+.++++.++
T Consensus 80 T~R~~~e---G--G~~~~~~~-------~~~~ll~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~ 132 (253)
T PRK02412 80 TFRTAKE---G--GEIALSDE-------EYLALIKAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAH 132 (253)
T ss_pred EECChhh---C--CCCCCCHH-------HHHHHHHHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHH
Confidence 2221110 0 00000000 1223567788888 899998764432 33456778888
Q ss_pred hCCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh---CCCccEEEEe
Q 012949 279 VLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPVEKLAVHL 354 (452)
Q Consensus 279 ~~G~~V~~~l~~~~g~p~~~r~-d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~---~p~~~l~vH~ 354 (452)
+.|.++. +|+- +...+ +.+.+.++.+.+.+.|||.+.|+=+ .-++.++.+++....+. .+..|+-.=+
T Consensus 133 ~~~~kvI--~S~H----~f~~tP~~~~l~~~~~~~~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~ 204 (253)
T PRK02412 133 EHGVKVV--LSYH----DFEKTPPKEEIVERLRKMESLGADIVKIAVM--PQSEQDVLTLLNATREMKELYADQPLITMS 204 (253)
T ss_pred HcCCEEE--EeeC----CCCCCcCHHHHHHHHHHHHHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 8888876 3431 21222 3367888999999999999888654 33567777777665432 2333443222
Q ss_pred CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949 355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 409 (452)
Q Consensus 355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G 409 (452)
=-.+| ...=+.+-..|...+-+++. + |- +.|+.+++++...++.++
T Consensus 205 MG~~G--~~SRil~~~~GS~~ty~~~~---~-~s---APGQ~~~~el~~i~~~l~ 250 (253)
T PRK02412 205 MGKLG--RISRLAGEVFGSSWTFASLD---K-AS---APGQISVEDLRRILEILH 250 (253)
T ss_pred CCCCc--hHHHcchhhhCCcceecCCC---C-CC---CCCCCCHHHHHHHHHHhc
Confidence 22222 23456666777776666654 3 23 456999999998888654
No 382
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.74 E-value=8.3 Score=38.19 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=74.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++..++.|++.|-+.-+..|.+ ..|.+|-.+.++.+++.++. .++|.+.+ +..+.+...++++
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~ 86 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAVAG-RVPVIAGV---------GANSTREAIELAR 86 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCccHHHHHHHHH
Confidence 367788889999999988888864 45677777666666666542 34443222 2335678889999
Q ss_pred HHHHCCcCEEEEcCCcC-CCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949 311 ELHDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVH 353 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G-~~~P~~v~~li~~l~~~~p~~~l~vH 353 (452)
.+.++|+|.|.+.=..- ..+++.+.+.++.+.+.. +.|+-++
T Consensus 87 ~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~iY 129 (281)
T cd00408 87 HAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVILY 129 (281)
T ss_pred HHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEE
Confidence 99999999777754433 246788888888888864 3466654
No 383
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.74 E-value=12 Score=40.06 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc----cccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV----PQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQ 216 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~----p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~ 216 (452)
..+.+..++-++.|.+.|++.|.+.......+. +......++++.+..+++. ++..+-|..
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~------------ 243 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKD------------ 243 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCccc------------
Confidence 468888898899999999998888532110000 0001234555555544332 221111210
Q ss_pred ccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEee
Q 012949 217 CHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCV 291 (452)
Q Consensus 217 ~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~ 291 (452)
...+-++...+. +...+++.+ +.|+.-++. .|+. ...+.+.++++.+++. |+.+.++++
T Consensus 244 -----------i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I-- 307 (446)
T PRK14337 244 -----------IAPEVIEAFGELPNLCPRLHLPLQSGSDRILKA-MGRK--YDMARYLDIVTDLRAARPDIALTTDLI-- 307 (446)
T ss_pred -----------CCHHHHHHHHhCCcccCeEEECCCCCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--
Confidence 112345555553 577888876 555544443 4442 2234555677777776 566666665
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
+|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 308 vG~PgET---~ed~~~tl~~l~~~~~~~~~~ 335 (446)
T PRK14337 308 VGFPGET---EEDFEQTLEAMRTVGFASSFS 335 (446)
T ss_pred EECCCCC---HHHHHHHHHHHHhcCCCeeEE
Confidence 6778775 577777888888888775554
No 384
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.70 E-value=9.7 Score=38.14 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 152 ELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
..++.++++|+|.|-||-.. .+.-.| -+.++++...+.+. ++.-+.++-.+. +..|+...+..++.
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~--vtld~mi~h~~aV~Rga~~~~vv~DmP-----f~sy~~s~e~av~n 99 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLP--VTLDEMIYHTKAVRRGAPNAFVVADMP-----FGSYQASPEQAVRN 99 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT----HHHHHHHHHHHHHH-TSSEEEEE-------TTSSTSSHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcC--cCHHHHHHHHHHHHhcCCCceEEecCC-----cccccCCHHHHHHH
Confidence 56889999999999999321 111011 13455555444321 111111222222 23343333333321
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e-cCCCC
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V-GCPVE 297 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~-g~p~~ 297 (452)
..+...++|++-|.+--.. ...+.|+..-+.|++|.+.|-.. + |.-.-
T Consensus 100 -------A~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~q 154 (261)
T PF02548_consen 100 -------AGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQ 154 (261)
T ss_dssp -------HHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--C
T ss_pred -------HHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEE
Confidence 3344455999999987542 12356677778899999888542 1 11122
Q ss_pred CCC--CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949 298 GAI--PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 340 (452)
Q Consensus 298 ~r~--d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~ 340 (452)
++. +...+.+-++++.++||-.|.|- +.|.++.+.|..
T Consensus 155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~ 194 (261)
T PF02548_consen 155 GKTAEEAEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITE 194 (261)
T ss_dssp STSHHHHHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHH
Confidence 333 34567788899999999999995 479888887764
No 385
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=89.69 E-value=6.9 Score=40.99 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC------CCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL------SIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~------G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
-++.-...|.|.+..++-..+. ..+.+++-+.+.+..+++++. .-. + . .|| +..+-.+++.-
T Consensus 125 ~i~~q~~ig~DI~m~LD~~~~~------~~~~~~~~~av~rT~rw~~r~~~~~~~~~~-~--~--lfg-iVqGg~~~dLR 192 (367)
T TIGR00449 125 IMEIQYALGSDIIMALDECTPP------PADYDYAEESLERTLRWAEESLEYHKRRNE-N--A--LFG-IVQGGTYPDLR 192 (367)
T ss_pred HHHHHHHHCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHhccCC-c--e--EEE-EecCCCCHHHH
Confidence 3444455688887777543321 233444444444444444321 101 1 1 121 23444445444
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccC
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~G 382 (452)
.+-++.+.+.+.+.+.|.--...-.++++.++|..+++.+|.. .-.|. +|.+. .+.+.++..|+|.+|.+..=
T Consensus 193 ~~sa~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~pt 266 (367)
T TIGR00449 193 RQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKD-KPRYL---MGVGTPELLANAVSLGIDMFDCVAPT 266 (367)
T ss_pred HHHHHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCcc-cceEe---cCCCCHHHHHHHHHcCCCEEeeCCcc
Confidence 4558888899999988877422234688999999999888752 22344 56654 78999999999999988753
No 386
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.69 E-value=20 Score=34.56 Aligned_cols=200 Identities=15% Similarity=0.128 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
..-.++++.+.+.|++.+-+--.. +..... .+.+.+.+..+. .+..+.+ --+.+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~--~~~~~i~~i~~~-~~~~l~v-~GGi~--------------------- 86 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGER--KNAEAIEKIIEA-VGVPVQL-GGGIR--------------------- 86 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCc--ccHHHHHHHHHH-cCCcEEE-cCCcC---------------------
Confidence 456788999999999988774322 111000 122222222222 2333322 11111
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCC--C-CC-C
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVE--G-AI-P 301 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~--~-r~-d 301 (452)
..++++.++++|++.|.+-...-+ ..+.+.+ .++..|. .+.+.+..- +.+.. + .. +
T Consensus 87 --~~~~~~~~~~~Ga~~v~iGs~~~~-------------~~~~~~~---i~~~~g~~~i~~sid~~-~~~v~~~g~~~~~ 147 (241)
T PRK13585 87 --SAEDAASLLDLGVDRVILGTAAVE-------------NPEIVRE---LSEEFGSERVMVSLDAK-DGEVVIKGWTEKT 147 (241)
T ss_pred --CHHHHHHHHHcCCCEEEEChHHhh-------------ChHHHHH---HHHHhCCCcEEEEEEee-CCEEEECCCcccC
Confidence 235889999999999887542210 1122222 2333332 233333311 00000 0 01 1
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
...+.++++.+.++|++.|.+-|+ .|...+. -.++++.+++.++ +|+-.-..=. ...+.....++||+.|=+.
T Consensus 148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~i~~~~~-iPvia~GGI~---~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 148 GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGV-NTEPVKELVDSVD-IPVIASGGVT---TLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHhCC-CCEEEeCCCC---CHHHHHHHHHcCCCEEEEE
Confidence 124567788888999999999776 5555443 2456777777764 3565544322 1345556677899965443
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949 380 VAGLGGCPYAKGASGNVATEDVVYML 405 (452)
Q Consensus 380 v~GlGecP~a~graGNaalE~vv~~L 405 (452)
-.-+ .+.-.+++++..+
T Consensus 223 sa~~---------~~~~~~~~~~~~~ 239 (241)
T PRK13585 223 SALY---------KGKFTLEEAIEAV 239 (241)
T ss_pred HHHh---------cCCcCHHHHHHHh
Confidence 3222 2344567666554
No 387
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.68 E-value=13 Score=39.91 Aligned_cols=149 Identities=10% Similarity=0.036 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcc--cccCCHHHHHHHHHh----ccCCceeEEe-cchhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWV--PQLADARDVMEAVRD----LEGARLPVLT-PNLKVILQRSIL 213 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~--p~~~D~e~v~~~i~~----~~~~~l~~l~-~~~~~~i~r~~~ 213 (452)
..+.+..++-++.|.+.|++.|.+... .....- .......++++.+.. ..+.....+. ....
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~-------- 251 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPK-------- 251 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcc--------
Confidence 468899999999999999998866421 110000 001133455555521 1222221111 0000
Q ss_pred hhhccchhhhhhhhccHHhHHHHHH--cCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEE
Q 012949 214 FQQCHASVISSNLWVYLQGFEAAIA--AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYV 288 (452)
Q Consensus 214 ~~~~~~~~i~~~~~~~~~~ie~a~~--~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l 288 (452)
. ...+-++...+ .|...+++.+ +.|+.-++. .|+. ...+.+.++++.+++. |+.+.+.+
T Consensus 252 -------~------i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~-m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~ 315 (455)
T PRK14335 252 -------D------LSDDLIATIAQESRLCRLVHLPVQHGSNGVLKR-MNRS--YTREHYLSLVGKLKASIPNVALSTDI 315 (455)
T ss_pred -------c------CCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHH-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 0 11235555555 4789999987 556654443 4442 2345666788888888 88877777
Q ss_pred EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
+ +|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 316 I--vGfPgET---~edf~~Tl~~i~~l~~~~~~ 343 (455)
T PRK14335 316 L--IGFPGET---EEDFEQTLDLMREVEFDSAF 343 (455)
T ss_pred E--EeCCCCC---HHHHHHHHHHHHhcCCCeEE
Confidence 6 6778764 56777777777777776554
No 388
>PRK08444 hypothetical protein; Provisional
Probab=89.66 E-value=1.3 Score=46.15 Aligned_cols=74 Identities=12% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCC-----------CcCcHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHD-----------TYGQSLPN 364 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hn-----------d~GlA~AN 364 (452)
..++|.+.+.++.+.+.|+.+|.|. .|.- ..+.+.++++.+++.+|. +|.|- ..|+.+.-
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~----i~i~a~s~~Ei~~~a~~~g~~~~e 152 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPN----LHVKAMTAAEVDFLSRKFGKSYEE 152 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCC----ceEeeCCHHHHHHHHHHcCCCHHH
Confidence 4688999999999999999999998 3321 236788999999999986 45555 78899877
Q ss_pred HHHHH-HcCCCEEee
Q 012949 365 ILISL-QMGISTVDC 378 (452)
Q Consensus 365 aLaAl-~aGa~~VD~ 378 (452)
.+..+ +||++.+..
T Consensus 153 ~l~~LkeAGl~~~~g 167 (353)
T PRK08444 153 VLEDMLEYGVDSMPG 167 (353)
T ss_pred HHHHHHHhCcccCCC
Confidence 77777 589886653
No 389
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.49 E-value=2.9 Score=45.32 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|+.+|.+ -.++-...+..++++||+.|++++
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 67888899999998866434344 5778899999999998777777 445566788999999999999644
No 390
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=89.45 E-value=1.4 Score=43.40 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=60.6
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~-s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+.++.|++.|++.|-+.+.. +.. .++. ..++.++++..++++|+++|+.|.+ ..-.+.+.+..++
T Consensus 135 ~qi~~A~~~GAd~VELhTG~---YA~-a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----------GHgLny~Nv~~i~ 200 (237)
T TIGR00559 135 DQISAAAEVGADRIEIHTGP---YAN-AYNKKEMAEELQRIVKASVHAHSLGLKVNA----------GHGLNYHNVKYFA 200 (237)
T ss_pred HHHHHHHHhCcCEEEEechh---hhc-CCCchhHHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHhHHHHH
Confidence 38899999999999998742 111 1222 2245599999999999999999862 2224455555554
Q ss_pred HHHHHCC-cCEEEE-----cCCcCCCcHHHHHHHHHHHH
Q 012949 310 KELHDMG-CFEISL-----GDTIGVGTPGTVVPMLEAVM 342 (452)
Q Consensus 310 ~~l~~~G-ad~I~L-----~DT~G~~~P~~v~~li~~l~ 342 (452)
+. -+ ...++| ++.+=++.+..|+++.+.++
T Consensus 201 ~~---~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 201 EI---LPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred hC---CCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 32 23 566665 44555556666666655543
No 391
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.41 E-value=5.2 Score=41.30 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCc--CEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949 306 AYVAKELHDMGC--FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382 (452)
Q Consensus 306 ~~~a~~l~~~Ga--d~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G 382 (452)
.+-++.+.++|+ |.|.| |++- ..-..+.++|+.+++.+|+.+|-.=- -+ -...+..++++||+.|.++..|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~---V~-t~e~a~~l~~aGad~i~vg~~~ 171 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGN---VG-TPEAVRELENAGADATKVGIGP 171 (326)
T ss_pred HHHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEe---cC-CHHHHHHHHHcCcCEEEECCCC
Confidence 356677888855 98888 6554 45578899999999999975544310 11 3456788889999998766544
No 392
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.40 E-value=4.5 Score=40.94 Aligned_cols=101 Identities=9% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949 270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV 347 (452)
Q Consensus 270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p~ 347 (452)
++++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.-. .-+.....+..+++.+.++..
T Consensus 6 ~k~ll~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~- 74 (283)
T PRK07998 6 GRILLDRIQEKHVLAGA-----FN-----TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD- 74 (283)
T ss_pred HHHHHHHHHHCCCEEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC-
Confidence 45777899999987642 31 23578888899999988876 4444322 122344667778888887775
Q ss_pred ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949 348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 383 (452)
Q Consensus 348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 383 (452)
+|+.+|. |.|.-+.....|+++|.+ ++|+|-..+
T Consensus 75 vPV~lHL--DH~~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (283)
T PRK07998 75 VPVSLHL--DHGKTFEDVKQAVRAGFTSVMIDGAALPF 110 (283)
T ss_pred CCEEEEC--cCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 3677655 667778899999999998 678886644
No 393
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.39 E-value=6.3 Score=39.80 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=50.0
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++.+.+.|++.|.+=++.-....+...|....+..+.+.++++.+|+. .++|.+-+. | +.+.+.++++
T Consensus 118 ~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~~~~~~~a~ 187 (299)
T cd02940 118 LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NITDIREIAR 187 (299)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----CchhHHHHHH
Confidence 3445555788877764432221111222222222334555666666653 566653332 2 2346788999
Q ss_pred HHHHCCcCEEEEcCCcCC
Q 012949 311 ELHDMGCFEISLGDTIGV 328 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~ 328 (452)
.+.++|++.|.+.+|...
T Consensus 188 ~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 188 AAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHcCCCEEEEeccccc
Confidence 999999999998777643
No 394
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.35 E-value=29 Score=35.98 Aligned_cols=232 Identities=22% Similarity=0.244 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS 224 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~ 224 (452)
-+.+.-++=++.|.++|.+.+-+.. |.+.+++ -+..+++-.++.+.+ . |+ |.
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvav-------p~~~~A~-al~~I~~~~~iPlVA---D----IH----Fd--------- 82 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTV-------PDRESAA-AFEAIKEGTNVPLVA---D----IH----FD--------- 82 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHH-hHHHHHhCCCCCEEE---e----eC----CC---------
Confidence 4556667778899999999999965 4333332 334444322222221 1 11 00
Q ss_pred hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------C
Q 012949 225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------G 298 (452)
Q Consensus 225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~ 298 (452)
..-.-.+++.|++.+||--. |++. -++++++++.||++|+.++.-+- .|+-.. +
T Consensus 83 -----~~lAl~a~~~g~dkiRINPG--------Nig~-----~e~v~~vv~~ak~~~ipIRIGVN--~GSL~~~~~~kyg 142 (346)
T TIGR00612 83 -----YRLAALAMAKGVAKVRINPG--------NIGF-----RERVRDVVEKARDHGKAMRIGVN--HGSLERRLLEKYG 142 (346)
T ss_pred -----cHHHHHHHHhccCeEEECCC--------CCCC-----HHHHHHHHHHHHHCCCCEEEecC--CCCCcHHHHHHcC
Confidence 01234567889999998532 3433 36778999999999999995443 232221 1
Q ss_pred CCCHHHHH----HHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCCCcCcHHHHHHHHH-
Q 012949 299 AIPPSKVA----YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISL- 369 (452)
Q Consensus 299 r~d~e~l~----~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hnd~GlA~ANaLaAl- 369 (452)
..+++-++ +.++.+.++|-+ .|+++.| .+..+.+-.+.+.+. ||- .|++-=--+.-.++-.+-+++
T Consensus 143 ~~t~eamveSAl~~v~~le~~~F~diviS~KsS----dv~~~i~ayr~la~~~dyPL-HlGVTEAG~~~~G~IKSaigig 217 (346)
T TIGR00612 143 DATAEAMVQSALEEAAILEKLGFRNVVLSMKAS----DVAETVAAYRLLAERSDYPL-HLGVTEAGMGVKGIVKSSAGIG 217 (346)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----CHHHHHHHHHHHHhhCCCCc-eeccccCCCCCCchhHHHHHHH
Confidence 12344433 355667778876 4555544 444444444444444 342 233322222333333333332
Q ss_pred ---HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHHH---HcCCCC--------------CCCChhhHHHHHHHHHH
Q 012949 370 ---QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVE--------------TNVDLRKLMLAGDFINK 428 (452)
Q Consensus 370 ---~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~L---~~~Gi~--------------t~iDl~~L~~la~~v~~ 428 (452)
..|. |.|-+|+.+ .|.||+-... +.+|+. +.+|+..+ ++.+++
T Consensus 218 ~LL~~GIGDTIRVSLT~-------------dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~---~~~ve~ 281 (346)
T TIGR00612 218 ILLARGIGDTIRVSLTD-------------DPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEKV---VRRVQE 281 (346)
T ss_pred HHHhhCCCCeEEEECCC-------------CcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHHH---HHHHHH
Confidence 4564 688888873 3577776543 333432 34555444 334444
Q ss_pred Hh-CCCCCCCcccccchh
Q 012949 429 HL-GRPSGSKTAIALNRI 445 (452)
Q Consensus 429 ~~-g~~~p~~~pi~G~~v 445 (452)
.+ +.+.|-+.++.|.-|
T Consensus 282 ~l~~~~~~l~VAVMGCvV 299 (346)
T TIGR00612 282 ALFHLKTPLKVAVMGCVV 299 (346)
T ss_pred HHhcCCCCCEEEEECcee
Confidence 33 667777777777544
No 395
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.26 E-value=2.7 Score=42.62 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
.+..|.+.+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+++..++ ++|-+|.-.+..-++..+..|-++|
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999988 57888888888888877643 4565565445666777888888999
Q ss_pred CCEEee
Q 012949 373 ISTVDC 378 (452)
Q Consensus 373 a~~VD~ 378 (452)
|+.|=.
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998844
No 396
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=89.24 E-value=10 Score=36.55 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=90.7
Q ss_pred HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949 154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG 232 (452)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ 232 (452)
+....+.|.++||+=..-.. ..-| +..+++.+++..+..+.+|++.+.. -+.|...--+.| .++
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTP----S~g~i~~~~~~~~ipv~vMIRpr~g----dF~Ys~~E~~~M-------~~d 77 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTP----SLGLIRQAREAVDIPVHVMIRPRGG----DFVYSDEEIEIM-------KED 77 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHTTSEEEEE--SSSS-----S---HHHHHHH-------HHH
T ss_pred HHHHHHcCCCEEEECCCccCCCcCc----CHHHHHHHHhhcCCceEEEECCCCC----CccCCHHHHHHH-------HHH
Confidence 44557899999999542110 1113 2345555555566777788865541 133444433333 359
Q ss_pred HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 312 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l 312 (452)
++.+.+.|++.|.+-+-..|-.. -.+.+.++++.|+ |+++. +=.+| |.. .| ..+..+.+
T Consensus 78 I~~~~~~GadG~VfG~L~~dg~i----------D~~~~~~Li~~a~--~~~~t--FHRAf---D~~-~d---~~~al~~L 136 (201)
T PF03932_consen 78 IRMLRELGADGFVFGALTEDGEI----------DEEALEELIEAAG--GMPVT--FHRAF---DEV-PD---PEEALEQL 136 (201)
T ss_dssp HHHHHHTT-SEEEE--BETTSSB-----------HHHHHHHHHHHT--TSEEE--E-GGG---GGS-ST---HHHHHHHH
T ss_pred HHHHHHcCCCeeEEEeECCCCCc----------CHHHHHHHHHhcC--CCeEE--EeCcH---HHh-CC---HHHHHHHH
Confidence 99999999998877653333211 1245566677765 66665 22333 222 22 44567778
Q ss_pred HHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHH-cCCCEEeec
Q 012949 313 HDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQ-MGISTVDCS 379 (452)
Q Consensus 313 ~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD~S 379 (452)
.++|+++|-= .|...+ .+-.+.++.+.+...+ +.|-.=. |.-..|.-.-++ .|+..||+|
T Consensus 137 ~~lG~~rVLT---SGg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg----Gv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 137 IELGFDRVLT---SGGAPTALEGIENLKELVEQAKGRIEIMPGG----GVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHT-SEEEE---STTSSSTTTCHHHHHHHHHHHTTSSEEEEES----S--TTTHHHHHHHHT-SEEEET
T ss_pred HhcCCCEEEC---CCCCCCHHHHHHHHHHHHHHcCCCcEEEecC----CCCHHHHHHHHHhhCCeEEeec
Confidence 8889998863 333322 2222334444443322 2222221 455556666666 899999986
No 397
>PTZ00124 adenosine deaminase; Provisional
Probab=89.20 E-value=23 Score=37.06 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=84.6
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh---CCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV---LSIPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~---~G~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
+-++.+.+-|+..+-+.+ ++.+....-|.+.++.++.+.+.++.|++ .|+.+..-++.. -..+++...+
T Consensus 110 e~~~d~~~dgV~Y~Eir~--~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~------R~~~~e~a~e 181 (362)
T PTZ00124 110 HAVFNKYKEGVVLMEFRY--SPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGD------TGHDAAPIKE 181 (362)
T ss_pred HHHHHHHHcCCEEEEEEc--CchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEec------CCCCHHHHHH
Confidence 456677778988777776 34332234578999999999999998875 577766433321 1135666666
Q ss_pred HHHHHHHCCcCEEEEcCCcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHH-HcCCCEEeeccc
Q 012949 308 VAKELHDMGCFEISLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISL-QMGISTVDCSVA 381 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~DT~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl-~aGa~~VD~Sv~ 381 (452)
.++.+.++.-..+.+ |-.|-=. +....+.++..++ .+.++.+|+=...+.. ..+...|+ ..|+++|.=.+.
T Consensus 182 ~~~~a~~~~~~vvGi-DLaG~E~~~~~f~~~f~~Ar~--~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~ 255 (362)
T PTZ00124 182 SADFCLKHKADFVGF-DHAGHEVDLKPFKDIFDYVRE--AGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIR 255 (362)
T ss_pred HHHHHHhccCCeEEE-eccCCCCCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccc
Confidence 777666653333433 5555322 1234555555555 3457899996653333 12334455 589998865554
No 398
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=89.17 E-value=19 Score=37.81 Aligned_cols=139 Identities=20% Similarity=0.175 Sum_probs=84.4
Q ss_pred HhHHHHHHcCCCEEEEEecC---------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEee--e-c
Q 012949 231 QGFEAAIAAGAKEVAIFASA---------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCV--V-G 293 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~---------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~--~-g 293 (452)
+..++|.++|.|.|.|-..- |+.. +...+|-|.++=++.+.++++.+|+. | +.|.+-++.. + +
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 45667888999998886421 1111 22235778888888888999888874 3 3454444420 0 0
Q ss_pred C-----C----CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC-----------C-cHHHHHHHHHHHHHhCCCccEEE
Q 012949 294 C-----P----VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV-----------G-TPGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 294 ~-----p----~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~-----------~-~P~~v~~li~~l~~~~p~~~l~v 352 (452)
. | ..+-.++++..++++.+.++|+|.|.+. .|. . .+....++++.+++.+.. +|..
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~ 310 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDV-PVIM 310 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCCC-CEEE
Confidence 0 0 0112467889999999999999999884 221 0 111224567778887653 4433
Q ss_pred -EeCCCcCcHHHHHHHHHHcC-CCEE
Q 012949 353 -HLHDTYGQSLPNILISLQMG-ISTV 376 (452)
Q Consensus 353 -H~Hnd~GlA~ANaLaAl~aG-a~~V 376 (452)
...+ ..+.+..+++.| +|.|
T Consensus 311 ~G~i~----~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 311 AGRME----DPELASEAINEGIADMI 332 (382)
T ss_pred eCCCC----CHHHHHHHHHcCCCCee
Confidence 3332 246677788877 6655
No 399
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=89.17 E-value=10 Score=37.88 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=71.6
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
..+.-.+.|++.|.|-...++ ++-.+++..+++.+++. +.++. + |. +++ ++++
T Consensus 30 ~A~~~~~~GAdiIDVg~~~~~-----------~eE~~r~~~~v~~l~~~~~~pls------I---DT--~~~----~v~e 83 (261)
T PRK07535 30 LALKQAEAGADYLDVNAGTAV-----------EEEPETMEWLVETVQEVVDVPLC------I---DS--PNP----AAIE 83 (261)
T ss_pred HHHHHHHCCCCEEEECCCCCc-----------hhHHHHHHHHHHHHHHhCCCCEE------E---eC--CCH----HHHH
Confidence 444556789999999876432 34567788888888764 65543 1 22 233 3444
Q ss_pred HHHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH----------HHHHHHHHHcCCC----
Q 012949 311 ELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS----------LPNILISLQMGIS---- 374 (452)
Q Consensus 311 ~l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA----------~ANaLaAl~aGa~---- 374 (452)
++.++ |++.|+ |..|-. ....++++.+++ +...-+.+|.|+. |.. ....-.|.++|+.
T Consensus 84 aaL~~~~G~~iIN--sIs~~~--~~~~~~~~l~~~-~g~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~~a~~~GI~~~~I 157 (261)
T PRK07535 84 AGLKVAKGPPLIN--SVSAEG--EKLEVVLPLVKK-YNAPVVALTMDDT-GIPKDAEDRLAVAKELVEKADEYGIPPEDI 157 (261)
T ss_pred HHHHhCCCCCEEE--eCCCCC--ccCHHHHHHHHH-hCCCEEEEecCCC-CCCCCHHHHHHHHHHHHHHHHHcCCCHhHE
Confidence 45554 887644 655543 112234443333 4333467788754 322 2334457789995
Q ss_pred EEeecccCCCC
Q 012949 375 TVDCSVAGLGG 385 (452)
Q Consensus 375 ~VD~Sv~GlGe 385 (452)
++|..+..+|.
T Consensus 158 ilDPgi~~~~~ 168 (261)
T PRK07535 158 YIDPLVLPLSA 168 (261)
T ss_pred EEeCCCCcccC
Confidence 88998886654
No 400
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=89.13 E-value=17 Score=36.77 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=76.5
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
..+..++.|++.|.|-...+-.. .-..+.++-++++..+++..++ .++.+. + |. +-.++++
T Consensus 43 ~a~~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT------~~~~va~ 104 (282)
T PRK11613 43 HANLMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DT------SKPEVIR 104 (282)
T ss_pred HHHHHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---EC------CCHHHHH
Confidence 44555678999999975332111 1135678888999999988885 354432 1 22 2236778
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC-----------------cHHHHHHHHHHcCC
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-----------------QSLPNILISLQMGI 373 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G-----------------lA~ANaLaAl~aGa 373 (452)
++.++|++.| -|..|...| .+.++ +++ +...-+-.|.+.+.. ..-...-.|..+|+
T Consensus 105 ~AL~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI 177 (282)
T PRK11613 105 ESAKAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGI 177 (282)
T ss_pred HHHHcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 8888899975 477776555 33333 333 322235667643211 11234455888999
Q ss_pred C----EEeecccCCCC
Q 012949 374 S----TVDCSVAGLGG 385 (452)
Q Consensus 374 ~----~VD~Sv~GlGe 385 (452)
. ++|-.+ |+|.
T Consensus 178 ~~~~IilDPGi-GF~k 192 (282)
T PRK11613 178 AKEKLLLDPGF-GFGK 192 (282)
T ss_pred ChhhEEEeCCC-CcCC
Confidence 7 789953 5554
No 401
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=89.00 E-value=13 Score=44.66 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH-HHHhccC---C-ceeEEecchhhhhhhhhhhhhccch
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME-AVRDLEG---A-RLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~-~i~~~~~---~-~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
+.+..++.++.+.+.|.+.|+||.... . .|.++.+. .+..+.. . +++..+...+
T Consensus 366 d~~~a~~~A~~qve~GA~iIDVn~~~~-----~-vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~--------------- 424 (1178)
T TIGR02082 366 DYDEALDIAKQQVENGAQILDINVDYG-----M-LDGVAAMKRFLNLLASEPDISTVPLMLDSSE--------------- 424 (1178)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC-----C-CCHHHHHHHHHHHHHhccCCCCCeEEEeCCc---------------
Confidence 456778889999999999999997532 1 24333333 3333321 1 3333332221
Q ss_pred hhhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCC
Q 012949 221 VISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPV 296 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~ 296 (452)
.+-+++|+++ |.+.|.=. +.-+. + +++.+++..+++.|..+. +++. -|.|.
T Consensus 425 ---------~~v~eaaLk~~~G~~IINsI-s~~~g----------~---~~~~~~~~l~~~yga~vV--~m~~de~G~p~ 479 (1178)
T TIGR02082 425 ---------WAVLEAGLKCIQGKCIVNSI-SLKDG----------E---ERFIETAKLIKEYGAAVV--VMAFDEEGQAR 479 (1178)
T ss_pred ---------HHHHHHHHHhcCCCCEEEeC-CCCCC----------C---ccHHHHHHHHHHhCCCEE--EEecCCCCCCC
Confidence 2367888887 87766522 11100 0 233366788889998875 3332 12222
Q ss_pred CCCCCHHHHHHHHHHHHH-CCcC--EEEEcC----CcCCCcH------HHHHHHHHHHHHhCCCccEEE
Q 012949 297 EGAIPPSKVAYVAKELHD-MGCF--EISLGD----TIGVGTP------GTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~-~Gad--~I~L~D----T~G~~~P------~~v~~li~~l~~~~p~~~l~v 352 (452)
...-..+.+.+..+.+.+ +|++ .|.| | |+|.... .+.-+.++.+++++|+.++.+
T Consensus 480 t~e~r~~i~~~~~~~~~~~~Gi~~edIi~-DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~~pg~~~~~ 547 (1178)
T TIGR02082 480 TADRKIEICKRAYNILTEKVGFPPEDIIF-DPNILTIATGIEEHRRYAINFIEAIRWIKEELPDAKISG 547 (1178)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCccccccCchHHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 111123456667777776 8973 5655 4 3445443 245566777777888755444
No 402
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.99 E-value=2.8 Score=42.19 Aligned_cols=82 Identities=10% Similarity=0.040 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
.+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+++...+ .+|-+|.=.+..-++..+..|-++|
T Consensus 20 dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 20 DGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999998 56778888888888777644 4566665334667777888888999
Q ss_pred CCEEee
Q 012949 373 ISTVDC 378 (452)
Q Consensus 373 a~~VD~ 378 (452)
|+.+=.
T Consensus 100 adav~~ 105 (296)
T TIGR03249 100 ADGYLL 105 (296)
T ss_pred CCEEEE
Confidence 998743
No 403
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.87 E-value=18 Score=32.94 Aligned_cols=126 Identities=21% Similarity=0.132 Sum_probs=73.3
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 311 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~ 311 (452)
-++.+++.|++.|.+.- +.++ .+.+..+...+++.+.+. .+. +....+...+.++.
T Consensus 18 ~~~~~~~~gv~gi~~~g----------------~~i~---~~~~~~~~~~~~v~~~v~----~~~-~~~~~~~~~~~a~~ 73 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP----------------GYVR---LAADALAGSDVPVIVVVG----FPT-GLTTTEVKVAEVEE 73 (201)
T ss_pred HHHHHHHhCCcEEEECH----------------HHHH---HHHHHhCCCCCeEEEEec----CCC-CCCcHHHHHHHHHH
Confidence 66778889999776652 1222 222222221244443232 221 11236788889999
Q ss_pred HHHCCcCEEEEcCCcCCCc---HHHHHHHHHHHHHhC-CCccEEE--EeCCCcCcHHHH--HHHHHHcCCCEEeeccc
Q 012949 312 LHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PVEKLAV--HLHDTYGQSLPN--ILISLQMGISTVDCSVA 381 (452)
Q Consensus 312 l~~~Gad~I~L~DT~G~~~---P~~v~~li~~l~~~~-p~~~l~v--H~Hnd~GlA~AN--aLaAl~aGa~~VD~Sv~ 381 (452)
+.++|+|.+.+.-..+... ++.+.+.++.+.+.. .+.++-+ ..+.+....... +..+.+.|++.|-.+..
T Consensus 74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 9999999998876665443 577888888888874 2334433 223331222111 12345799999988774
No 404
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.84 E-value=15 Score=40.14 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhccCCc-eeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLEGAR-LPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
..+.+..++=++.|.+-|++.|.+.......|.-.+.+ ..++++.+..+.+.+ +....+...
T Consensus 185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~-------------- 250 (502)
T PRK14326 185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPA-------------- 250 (502)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChh--------------
Confidence 46788888888999888999887742110000000012 234455444443321 111111100
Q ss_pred hhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949 220 SVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC 294 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~ 294 (452)
. ...+-++...++| ...+++.+ +.||--++. +|+. ...+.+.++++.+++. |+.+.++++ +|.
T Consensus 251 -~------~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGf 318 (502)
T PRK14326 251 -E------FTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGF 318 (502)
T ss_pred -h------CCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EEC
Confidence 0 1224556666776 67788865 566654443 4443 3345566777888885 667776666 677
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 319 PgET---~edf~~Tl~~i~~~~~~~~~ 342 (502)
T PRK14326 319 PGET---EEDFQATLDVVREARFSSAF 342 (502)
T ss_pred CCCC---HHHHHHHHHHHHHcCCCEEE
Confidence 8775 56677777777777776443
No 405
>PRK08185 hypothetical protein; Provisional
Probab=88.78 E-value=5.2 Score=40.45 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCCCcc
Q 012949 271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEK 349 (452)
Q Consensus 271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~ 349 (452)
.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.-..--..|..+..++..+.++.. +|
T Consensus 2 ~~~L~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP 70 (283)
T PRK08185 2 KELLKVAKEHQFAVGA-----FN-----VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP 70 (283)
T ss_pred HHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence 4667889999987752 21 24678888899999999877 4444333222234557888888777765 36
Q ss_pred EEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949 350 LAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG 385 (452)
Q Consensus 350 l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe 385 (452)
+.+| =|-|.-+.....|+++|.+ ++|+|-..+-+
T Consensus 71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~ee 106 (283)
T PRK08185 71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLLPYEE 106 (283)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 6665 4777788899999999977 67888775554
No 406
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.77 E-value=6.1 Score=39.29 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeC-CCcCcHHHHHHHHHHc
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLH-DTYGQSLPNILISLQM 371 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~H-nd~GlA~ANaLaAl~a 371 (452)
.+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+++...+ .+|-+|.- ++..-++..+..|.++
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999999998 67788888888888887753 56767765 4677888999999999
Q ss_pred CCCEEeeccc
Q 012949 372 GISTVDCSVA 381 (452)
Q Consensus 372 Ga~~VD~Sv~ 381 (452)
|++.|=..--
T Consensus 95 G~d~v~~~~P 104 (284)
T cd00950 95 GADAALVVTP 104 (284)
T ss_pred CCCEEEEccc
Confidence 9998776643
No 407
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=88.75 E-value=1.8 Score=43.77 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=75.3
Q ss_pred HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+..+.|-++|.+.|.+.... ||.. +.. |..+-...+.+.. ++.+ -.++|.+ ..-..+ ..-+
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~-~~g-g~~Rm~~p~~I~a-Ik~~--V~iPVig------------k~Righ-~~Ea 89 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIR-AAG-GVARMADPKMIEE-IMDA--VSIPVMA------------KARIGH-FVEA 89 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHh-hcC-CeeecCCHHHHHH-HHHh--CCCCeEE------------eehhhH-HHHH
Confidence 35667778888877765432 4432 222 3333333333321 1211 2566642 111233 4567
Q ss_pred HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
+.+.++|+|.| |-+..++| ..+++...|..| ..+|-.-+- | +..++.++..|+++|-+|
T Consensus 90 ~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~-~----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 90 QILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGAR-N----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence 78899999999 88899999 668899999988 334433332 2 577899999999999988
No 408
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.75 E-value=28 Score=34.88 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQ 215 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~ 215 (452)
.++.+.-.++++.|.+. |++.|=+...... .+.+. .+|-.+.++ +..+-++++++ .+.+
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE--~~~Lt-~~Er~~~~~~~~~~~~~~~~viagv~~~~~~---------- 83 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGE--GFLLS-VEERKQIAEIVAEAAKGKVTLIAHVGSLNLK---------- 83 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcC--cccCC-HHHHHHHHHHHHHHhCCCCeEEeccCCCCHH----------
Confidence 47899999999999999 9999877533221 23343 233333333 22222333332 1111
Q ss_pred hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecC
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGC 294 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~ 294 (452)
+. .+..+.|.++|++.+.+..+.. +..|.++.++-+..+.+ .. ++++..| ..
T Consensus 84 ----~a--------i~~a~~a~~~Gad~v~~~~P~y-------~~~~~~~i~~~~~~v~~---a~~~lpi~iY-----n~ 136 (288)
T cd00954 84 ----ES--------QELAKHAEELGYDAISAITPFY-------YKFSFEEIKDYYREIIA---AAASLPMIIY-----HI 136 (288)
T ss_pred ----HH--------HHHHHHHHHcCCCEEEEeCCCC-------CCCCHHHHHHHHHHHHH---hcCCCCEEEE-----eC
Confidence 11 2355678899999998876532 23455666665655544 34 5676532 23
Q ss_pred CCCC--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949 295 PVEG--AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 295 p~~~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG 372 (452)
|..+ ..+++.+.+++ + ....+.++|+.|- ...+.++ ++..+....-+-+++. ..+.++.+|
T Consensus 137 P~~tg~~l~~~~~~~L~----~-~pnivgiK~s~~d--~~~~~~~----~~~~~~~~~v~~G~d~------~~~~~~~~G 199 (288)
T cd00954 137 PALTGVNLTLEQFLELF----E-IPNVIGVKFTATD--LYDLERI----RAASPEDKLVLNGFDE------MLLSALALG 199 (288)
T ss_pred ccccCCCCCHHHHHHHh----c-CCCEEEEEeCCCC--HHHHHHH----HHhCCCCcEEEEechH------HHHHHHHcC
Confidence 4322 35666666555 3 3579999999874 3444443 3445532233444543 345577899
Q ss_pred CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949 373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 406 (452)
Q Consensus 373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~ 406 (452)
++.. +.| .+|+-.|.++...+
T Consensus 200 ~~G~---i~~----------~~n~~P~~~~~l~~ 220 (288)
T cd00954 200 ADGA---IGS----------TYNVNGKRYRKIFE 220 (288)
T ss_pred CCEE---EeC----------hhhhCHHHHHHHHH
Confidence 8743 443 33455555555554
No 409
>PLN02417 dihydrodipicolinate synthase
Probab=88.70 E-value=6.9 Score=39.15 Aligned_cols=100 Identities=11% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM 371 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a 371 (452)
.+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..++ ++|-+|. +++.--++..+..|-++
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999 56778888888887777654 4666655 67888889999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949 372 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 406 (452)
Q Consensus 372 Ga~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~ 406 (452)
||+.|=..- ||- ..++-|+++.+++
T Consensus 96 Gadav~~~~------P~y----~~~~~~~i~~~f~ 120 (280)
T PLN02417 96 GMHAALHIN------PYY----GKTSQEGLIKHFE 120 (280)
T ss_pred CCCEEEEcC------Ccc----CCCCHHHHHHHHH
Confidence 999776643 221 1234566666665
No 410
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=88.70 E-value=16 Score=38.86 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCcee---EEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLP---VLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~---~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.++.++=++.|.+.|++.|.+... ........-....++++.+..+.+.+.. .+-|..
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~------------- 229 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDE------------- 229 (430)
T ss_pred ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCccc-------------
Confidence 357788888888888899998875421 1110000012356666666554322211 010110
Q ss_pred cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~ 292 (452)
...+-++.+.++| ...+++.+ +.|+.-++. +|+. ...+.+.++++.+++. |+.+.++++ +
T Consensus 230 ----------~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~-m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~ 294 (430)
T TIGR01125 230 ----------LTDDVIDLMAEGPKVLPYLDIPLQHASDRILKL-MRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--V 294 (430)
T ss_pred ----------CCHHHHHHHhhCCcccCceEeCCCCCCHHHHhh-CCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--E
Confidence 1224556666774 67777755 555544332 3332 2245566777888887 455555554 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 295 G~PgET---~e~~~~t~~fl~~~~~~~~~ 320 (430)
T TIGR01125 295 GFPGET---EEDFQELLDFVEEGQFDRLG 320 (430)
T ss_pred ECCCCC---HHHHHHHHHHHHhcCCCEEe
Confidence 777664 67777777877888876554
No 411
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=88.64 E-value=21 Score=37.45 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=82.2
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~----G~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
-++.-...|.|.+..++-..+ ...+++++-+.+.+..+++++. ...-.-.. .|| +..+-.+++.-.+
T Consensus 125 ~i~~q~~igsDI~m~LD~~~~------~~~~~~~~~~av~rT~rW~~r~~~~~~~~~~~~~--lfg-iVqGg~~~dLR~~ 195 (368)
T TIGR00430 125 SMEIQYALGSDIIMAFDECTP------YPADRDYAEKSTERTLRWAERCLEAHDRRGNKQA--LFG-IVQGGTYEDLRSQ 195 (368)
T ss_pred HHHHHHHhCCCEEEECCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCee--EEE-EeCCCCCHHHHHH
Confidence 344445578887777653322 1233344444444444443331 10000001 122 3445455555555
Q ss_pred HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccCC
Q 012949 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
-++.+.+.+.+.+.|.--+..-..+++.++|..++..+|.. .-.|. +|.+. .+.+.++..|+|.+|.+.-=.
T Consensus 196 sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~ptr 268 (368)
T TIGR00430 196 SAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPKD-KPRYL---MGVGTPEDLLNAIRRGIDMFDCVMPTR 268 (368)
T ss_pred HHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCCcc-cceee---cCCCCHHHHHHHHHcCCCEEEecCccc
Confidence 78889999999988877333345677889999988888752 23343 55554 689999999999999887533
No 412
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.63 E-value=3.2 Score=41.81 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHH
Q 012949 297 EGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQ 370 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~ 370 (452)
.+..|.+.+.++++.+.+.| ++.|.+.-|+|= +++++-.++++.+.+...+ ++|-+|. |++.--++..+..|-+
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999 999999999874 7888888899888887653 5778885 7888888999999999
Q ss_pred cCCCEEeec
Q 012949 371 MGISTVDCS 379 (452)
Q Consensus 371 aGa~~VD~S 379 (452)
+||+.|=..
T Consensus 95 ~Gad~v~v~ 103 (290)
T TIGR00683 95 LGYDCLSAV 103 (290)
T ss_pred hCCCEEEEe
Confidence 999988763
No 413
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=88.57 E-value=9.6 Score=38.45 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
.+++.+.+.++.+.+.|++.|-+--+-+ ..+++.+..+++..++. +.++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 3578888889999999999887664332 46788888888887764 45788888754 455678
Q ss_pred HHcCCCEEe
Q 012949 369 LQMGISTVD 377 (452)
Q Consensus 369 l~aGa~~VD 377 (452)
+++|++.|+
T Consensus 190 l~~G~~~i~ 198 (342)
T cd01299 190 IRAGVDTIE 198 (342)
T ss_pred HHcCCCEEe
Confidence 889988653
No 414
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.55 E-value=30 Score=35.09 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~ 217 (452)
.++.+.-.++++.|.+.|++.|=+...... .|.+. +..++++.+.+..+-++++++ .+.+
T Consensus 21 ~vD~~a~~~lv~~li~~Gv~gi~~~GttGE--~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~------------ 86 (299)
T COG0329 21 SVDEEALRRLVEFLIAAGVDGLVVLGTTGE--SPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA------------ 86 (299)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--chhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHH------------
Confidence 378999999999999999997777432211 23332 223344444444443444332 2221
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
+. .+-.+.|.+.|+|-+.+..+- + .+-+.++..+-+..+++.+ ++++.. |. .|.-
T Consensus 87 --ea--------i~lak~a~~~Gad~il~v~Py---Y----~k~~~~gl~~hf~~ia~a~---~lPvil---YN--~P~~ 141 (299)
T COG0329 87 --EA--------IELAKHAEKLGADGILVVPPY---Y----NKPSQEGLYAHFKAIAEAV---DLPVIL---YN--IPSR 141 (299)
T ss_pred --HH--------HHHHHHHHhcCCCEEEEeCCC---C----cCCChHHHHHHHHHHHHhc---CCCEEE---Ee--Cccc
Confidence 11 124566778999999887652 1 2334555666555555544 555542 22 2322
Q ss_pred C--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949 298 G--AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGIS 374 (452)
Q Consensus 298 ~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~ 374 (452)
+ ..+++.+.+++ + ....+.++|+.|- -..+.+ +++..++ .-+.+=+.++ -.+.++..|++
T Consensus 142 tg~~l~~e~i~~la----~-~~nivgiKd~~gd--~~~~~~----~~~~~~~~~f~v~~G~d~------~~~~~~~~G~~ 204 (299)
T COG0329 142 TGVDLSPETIARLA----E-HPNIVGVKDSSGD--LDRLEE----IIAALGDRDFIVLSGDDE------LALPALLLGAD 204 (299)
T ss_pred cCCCCCHHHHHHHh----c-CCCEEEEEeCCcC--HHHHHH----HHHhcCccCeeEEeCchH------HHHHHHhCCCC
Confidence 2 23455555444 4 4679999999993 233333 3333443 1233333332 34455568876
Q ss_pred EEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
+.+. .++|..-+..+...+.
T Consensus 205 ---G~is----------~~~N~~p~~~~~l~~~ 224 (299)
T COG0329 205 ---GVIS----------VTANVAPELAVELYRA 224 (299)
T ss_pred ---eEEe----------cccccCHHHHHHHHHH
Confidence 3444 3456766766665554
No 415
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.37 E-value=4.4 Score=40.19 Aligned_cols=175 Identities=19% Similarity=0.247 Sum_probs=99.1
Q ss_pred HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949 152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~ 230 (452)
.+.+.+..+|.+.+-+..- +... + ...+.+++.++.. + + -+.||.. -.+..++.++
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~~-~--~-~~lpNTa--------G~~ta~eAv~------- 80 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDKS-G--Y-TLLPNTA--------GCRTAEEAVR------- 80 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhcccc-C--C-EECCCCC--------CCCCHHHHHH-------
Confidence 4567788899999988743 1110 0 1224566666531 1 1 1345543 1111112111
Q ss_pred HhHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949 231 QGFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVA 306 (452)
Q Consensus 231 ~~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~r~d~e~l~ 306 (452)
-.+.|.+. |.++|.+-+-..+- .-+.+..+.++.|+++ |+.|..|.. + |+
T Consensus 81 -~a~lare~~~~~~iKlEVi~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~vlpyc~-----d-----d~---- 134 (248)
T cd04728 81 -TARLAREALGTDWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFTVLPYCT-----D-----DP---- 134 (248)
T ss_pred -HHHHHHHHhCCCeEEEEEecCcc-----------ccccCHHHHHHHHHHHHHCCCEEEEEeC-----C-----CH----
Confidence 23444454 77888887654442 2245666777888887 998864332 1 22
Q ss_pred HHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE--eeccc
Q 012949 307 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV--DCSVA 381 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V--D~Sv~ 381 (452)
..++++.++|++.| .+ ..+|....-...++|+.+++.. .++|-+-. |.. -.-+..|++.||+.| .++|.
T Consensus 135 ~~ar~l~~~G~~~v-mPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~eg----GI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 135 VLAKRLEDAGCAAV-MPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDA----GIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred HHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeC----CCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 47788888999988 44 5666555444466677777763 33443322 222 356778999999844 44454
No 416
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.35 E-value=18 Score=38.56 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCC---CCcccccCCHHHHHHHHHhccCCc-ee--EEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS---PKWVPQLADARDVMEAVRDLEGAR-LP--VLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s---~~~~p~~~D~e~v~~~i~~~~~~~-l~--~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.++.++-++.|.+.|++.|-+....- ....+...+..++++.+..+.+.. +. ..-|..
T Consensus 175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~------------- 241 (439)
T PRK14328 175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKD------------- 241 (439)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhh-------------
Confidence 46788888889999999999987754211 111111123455666665443321 21 111210
Q ss_pred cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~ 292 (452)
...+-++...++| ...+++.+ +.|+.-++. +|+. ...+.+.++++.+++. ++.+.++++ +
T Consensus 242 ----------i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--v 306 (439)
T PRK14328 242 ----------LSDDLIEAIADCDKVCEHIHLPVQSGSNRILKK-MNRH--YTREYYLELVEKIKSNIPDVAITTDII--V 306 (439)
T ss_pred ----------cCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--E
Confidence 1223555566665 67788875 566654443 4432 1233444566777776 555655555 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEI 320 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I 320 (452)
|.|.++ .+.+.+.++.+.+.+.+.+
T Consensus 307 G~PgET---~ed~~~tl~~i~~l~~~~~ 331 (439)
T PRK14328 307 GFPGET---EEDFEETLDLVKEVRYDSA 331 (439)
T ss_pred ECCCCC---HHHHHHHHHHHHhcCCCcc
Confidence 778775 5666667777777765543
No 417
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=88.34 E-value=21 Score=34.66 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=62.1
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCC-------C-
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAI-------P- 301 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~-------d- 301 (452)
.++.+.++|++.+.+...... +.++.+++.+++. +..+.+.+... +...+. +
T Consensus 72 ~i~~~~~~gad~itvH~~ag~---------------~~i~~~~~~~~~~~~~~~~~V~~lts---~~~~~l~~~~~~~~~ 133 (230)
T PRK00230 72 AVRALAKLGVDMVNVHASGGP---------------RMMKAAREALEPKSRPLLIAVTVLTS---MDEEDLAELGINLSL 133 (230)
T ss_pred HHHHHHHcCCCEEEEcccCCH---------------HHHHHHHHHhhccCCCeEEEEEECCC---CCHHHHHhCcCCCCH
Confidence 567788999999888765443 3344445555543 33444444432 221111 1
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC--------CCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--------PVEKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~--------p~~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
.+.+..+++.+.+.|++.+... |.. ++.+|+.+ |+++.. -...+-.--+...-.|+++|+
T Consensus 134 ~~~v~~~a~~a~~~g~dgvv~~-------~~~----~~~ir~~~~~~~~~v~pGI~~~-g~~~~dq~~~~~~~~ai~~Ga 201 (230)
T PRK00230 134 EEQVLRLAKLAQEAGLDGVVCS-------AQE----AAAIREATGPDFLLVTPGIRPA-GSDAGDQKRVMTPAQAIAAGS 201 (230)
T ss_pred HHHHHHHHHHHHHcCCeEEEeC-------hHH----HHHHHhhcCCceEEEcCCcCCC-CCCcchHHHHhCHHHHHHcCC
Confidence 2455677888888999876543 222 23333333 443210 001122223456778889999
Q ss_pred CEE
Q 012949 374 STV 376 (452)
Q Consensus 374 ~~V 376 (452)
+.|
T Consensus 202 d~i 204 (230)
T PRK00230 202 DYI 204 (230)
T ss_pred CEE
Confidence 977
No 418
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.30 E-value=3.4 Score=41.35 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM 371 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a 371 (452)
.+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ ++|-+|. +++..-++..+..|-++
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDV 92 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999998988 45677777788877776543 4566665 55677788899999999
Q ss_pred CCCEEeecc
Q 012949 372 GISTVDCSV 380 (452)
Q Consensus 372 Ga~~VD~Sv 380 (452)
||+.|=..-
T Consensus 93 Gad~v~v~p 101 (285)
T TIGR00674 93 GADGFLVVT 101 (285)
T ss_pred CCCEEEEcC
Confidence 999876654
No 419
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.26 E-value=20 Score=39.27 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCccccc-CCHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~-~D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~ 217 (452)
..+.++.++-++.|.+.|++.|.+... ...+..... ....++++.+..+ ..+++...-|..
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~------------- 306 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRD------------- 306 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCccc-------------
Confidence 478899999999999999998876421 111110000 1134556665543 112222111210
Q ss_pred cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949 218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 292 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~ 292 (452)
...+-++...++| ...+++.+ +.|+.-++. .|+. ...+.+.++++.+|+. ++.+.+.++ +
T Consensus 307 ----------i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~p~i~i~tdiI--v 371 (509)
T PRK14327 307 ----------FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKI-MARK--YTRESYLELVRKIKEAIPNVALTTDII--V 371 (509)
T ss_pred ----------CCHHHHHHHHhcCCccceEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCcEEeeeEE--E
Confidence 1123556666777 57788876 556654433 3332 2234555777888887 555555555 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 372 GfPgET---~edf~~Tl~~v~~l~~d~~~~ 398 (509)
T PRK14327 372 GFPNET---DEQFEETLSLYREVGFDHAYT 398 (509)
T ss_pred eCCCCC---HHHHHHHHHHHHHcCCCeEEE
Confidence 778774 567777777777778765554
No 420
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.24 E-value=3.3 Score=41.79 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949 297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM 371 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a 371 (452)
.+..|.+.+.++++.+.+.|++.|.+.-|+| .++-++-.++++.+.+...+ ++|-+|. +++.--++..+..|-++
T Consensus 15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~ 94 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEA 94 (294)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999998 45667777777777776644 5666655 67788889999999999
Q ss_pred CCCEEeecc
Q 012949 372 GISTVDCSV 380 (452)
Q Consensus 372 Ga~~VD~Sv 380 (452)
||+.|=..-
T Consensus 95 Gad~v~v~p 103 (294)
T TIGR02313 95 GADAAMVIV 103 (294)
T ss_pred CCCEEEEcC
Confidence 999775543
No 421
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=88.24 E-value=18 Score=38.49 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-----ccccCCHHHHHHHHHhccCCc---eeEEecchhhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQLADARDVMEAVRDLEGAR---LPVLTPNLKVILQRSILFQ 215 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~-----~p~~~D~e~v~~~i~~~~~~~---l~~l~~~~~~~i~r~~~~~ 215 (452)
..+.+..++-++.|.+.|++.|-+.......+ .+...+..++++.+....+.. +..+-|..
T Consensus 173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~----------- 241 (438)
T TIGR01574 173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLD----------- 241 (438)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCccc-----------
Confidence 57889999999999999999886643110001 011113455666665433332 11111110
Q ss_pred hccchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEe
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSC 290 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~ 290 (452)
...+-++...++| ...+++.+ +.|+.-++. .|+. ...+.+.++++.+++. |+.+.+.++
T Consensus 242 ------------l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~ir~~~~~i~i~~d~I- 305 (438)
T TIGR01574 242 ------------FDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL-MKRG--YTREWYLNLVRKLRAACPNVSISTDII- 305 (438)
T ss_pred ------------CCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEeeCEE-
Confidence 1224566677777 78888876 556655443 3332 1233444566777776 666666665
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949 291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 322 (452)
Q Consensus 291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L 322 (452)
+|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 306 -vG~PgEt---~ed~~~tl~~i~~~~~~~~~~ 333 (438)
T TIGR01574 306 -VGFPGET---EEDFEETLDLLREVEFDSAFS 333 (438)
T ss_pred -EeCCCCC---HHHHHHHHHHHHhcCCCeeee
Confidence 5677764 677777888888888775553
No 422
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.19 E-value=11 Score=37.69 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=63.6
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++..++.|++.|-+.-+..|.+ -.|.+|-.+.++.+++.++. .++|.+.+ +..+.+...++++
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~-----~ls~~Er~~~~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~ 90 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESP-----TLTHEEHEELIRAVVEAVNG-RVPVIAGT---------GSNSTAEAIELTK 90 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccc-----cCCHHHHHHHHHHHHHHhCC-CCcEEeec---------CCchHHHHHHHHH
Confidence 367777888999888887777753 34666666666555555532 23443222 1234577777888
Q ss_pred HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949 311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP 346 (452)
Q Consensus 311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p 346 (452)
.+.++|+|.|.+ +=.....+++.+.+.++.+.+..+
T Consensus 91 ~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~ 127 (292)
T PRK03170 91 FAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD 127 (292)
T ss_pred HHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 888888886665 333344466777777777776543
No 423
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.18 E-value=5.6 Score=40.31 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCC-CcHHHHHHHHHHHHHhC
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAVV 345 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~-~~P~~v~~li~~l~~~~ 345 (452)
.+.++.+.|++.++-|-+ |. -++.+.+..+++.+.+.+.. .|.+... ... .....+..+++.+.++.
T Consensus 5 ~~~~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~ 74 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQ-----FN-----MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEM 74 (285)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHc
Confidence 346777899999987752 21 24678888899999988876 5555442 233 33456778888888776
Q ss_pred C-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949 346 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 383 (452)
Q Consensus 346 p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 383 (452)
. .+|+.+| =|-|.-+.....|+++|.+ ++|+|-..+
T Consensus 75 ~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVM~DgS~lp~ 113 (285)
T PRK07709 75 NITVPVAIH--LDHGSSFEKCKEAIDAGFTSVMIDASHHPF 113 (285)
T ss_pred CCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 4 2466655 5777789999999999998 779887644
No 424
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.13 E-value=7.7 Score=39.44 Aligned_cols=107 Identities=13% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-----C------CC
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-----G------VG 329 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-----G------~~ 329 (452)
.+.++.++.++++++. ..++|.+-+- .+--++..+.+.++++.++|+..|.|-|.+ | +.
T Consensus 61 l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv 130 (292)
T PRK11320 61 TTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIV 130 (292)
T ss_pred CCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCccc
Confidence 3567777776665443 4677764333 333378899999999999999999999987 3 34
Q ss_pred cHHHHHHHHHHHHHhCCCccEEEEeC------CCcCcHHHHHHHHHHcCCCEEe
Q 012949 330 TPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 330 ~P~~v~~li~~l~~~~p~~~l~vH~H------nd~GlA~ANaLaAl~aGa~~VD 377 (452)
.+++....|++.++.-.+..+-+=.- ..+--|+.-+.+-.+||||.|=
T Consensus 131 ~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~if 184 (292)
T PRK11320 131 SQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIF 184 (292)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence 66777777887776543222333222 2345678888889999999663
No 425
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=88.13 E-value=11 Score=41.14 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 313 (452)
Q Consensus 234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~ 313 (452)
+--...|.|.+..++-..+ ...+++++-+.+....+++++.--...-.=...| .+..|-..++--.+-++.+.
T Consensus 109 ~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~-giVQGg~~~dLR~~sa~~l~ 181 (487)
T PRK13533 109 EFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGDMLWV-APVQGGTYPDLREESAREAS 181 (487)
T ss_pred HHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEE-EEecCCCCHHHHHHHHHHHH
Confidence 3334568898888764332 2334555555555555444432100000000112 23456677888888999999
Q ss_pred HCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeeccc
Q 012949 314 DMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 314 ~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~Sv~ 381 (452)
++|.+.+.|.-.+... ...++.++|..++..+|. .++.+ +|.| ..+...++..|+|.+|.+..
T Consensus 182 ~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL-----~GvG~P~~i~~~V~lGvDlFD~v~p 249 (487)
T PRK13533 182 KLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHL-----FGAGHPMMFALAVALGCDLFDSAAY 249 (487)
T ss_pred hCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEE-----eCCCCHHHHHHHHHhCCCceeccHH
Confidence 9999999987655554 568899999999999864 34433 3555 46899999999999998764
No 426
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.07 E-value=33 Score=35.20 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CCH-HHHHHHHHhcc-CCceeEEe---cchhhhhhhhhhhhhc
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADA-RDVMEAVRDLE-GARLPVLT---PNLKVILQRSILFQQC 217 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~-e~v~~~i~~~~-~~~l~~l~---~~~~~~i~r~~~~~~~ 217 (452)
.+.++-.++++.+.++|++.||+-....|. -+.. .+. +.+++.++.+. .+.+++++ |+..
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~------------ 177 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPT-DPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS------------ 177 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch------------
Confidence 356777899999999999999996532121 0111 112 22334444332 12344443 2211
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC----hHHHhh---hcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEE
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS----EAFSKS---NINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVS 289 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S----d~~~~~---~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~ 289 (452)
+ ..+..+.+.++|++.|.+..... +..... ..+.|-...+....+.+..+++ .++++.+
T Consensus 178 --~--------~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig--- 244 (334)
T PRK07565 178 --N--------LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAA--- 244 (334)
T ss_pred --h--------HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEE---
Confidence 0 01244667789999988765431 110000 1122333333334455555544 3565532
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949 290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~ 344 (452)
. .+-.+.+++.+.. .+||+.|.++=..=.--|.-+.++++.|.+.
T Consensus 245 --~----GGI~s~~Da~e~l----~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~ 289 (334)
T PRK07565 245 --T----TGVHDAEDVIKML----LAGADVVMIASALLRHGPDYIGTILRGLEDW 289 (334)
T ss_pred --E----CCCCCHHHHHHHH----HcCCCceeeehHHhhhCcHHHHHHHHHHHHH
Confidence 1 3444566655544 3799888887222111266666666666543
No 427
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.05 E-value=6.4 Score=38.15 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=60.2
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CC---C--C---
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GA---I--P--- 301 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r---~--d--- 301 (452)
+.++.+.++|.+.|-+..+. .. .+.++.+.+++.|+++.+ ++..++.... .+ . +
T Consensus 18 e~~~~~~e~G~~~vEl~~~~---------~~-------~~~~l~~~l~~~gl~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR03234 18 ERFAAAAQAGFTGVEYLFPY---------DW-------DAEALKARLAAAGLEQVL-FNLPAGDWAAGERGIACLPGREE 80 (254)
T ss_pred HHHHHHHHcCCCEEEecCCc---------cC-------CHHHHHHHHHHcCCeEEE-EeCCCCccccCCCccccCCccHH
Confidence 47888999999999987532 11 123445677899999863 2211110000 00 0 1
Q ss_pred --HHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHH-HHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949 302 --PSKVAYVAKELHDMGCFEISLGDTI--GVGTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDT 357 (452)
Q Consensus 302 --~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd 357 (452)
.+.+.+.++.+.++|+..|.+.-.. +-...++ ...+++.+++. . -++.|.++.||.
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 1445567778889999998874211 1111222 23333333332 2 245788888864
No 428
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.96 E-value=2.9 Score=40.50 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 379 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S 379 (452)
.+++...++++.+.+.|++.|-+. .-+| ...+.|+.+++.+|+..|+...=-|. ..+-.|+++||+++=+-
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEECC
Confidence 468999999999999999999887 4456 56677899999999877777665554 67889999999976432
Q ss_pred ccCC--------CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949 380 VAGL--------GGCPYAKGASGNVATEDVVYMLSGLGVE 411 (452)
Q Consensus 380 v~Gl--------GecP~a~graGNaalE~vv~~L~~~Gi~ 411 (452)
..-- =+.|+.|| -..++| +..++ .+|.+
T Consensus 95 ~~~~~vi~~a~~~~i~~iPG--~~TptE-i~~a~-~~Ga~ 130 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIPG--VSTPSE-LMLGM-ELGLR 130 (212)
T ss_pred CCCHHHHHHHHHcCCCEeCC--CCCHHH-HHHHH-HCCCC
Confidence 1100 12466666 245666 44444 44543
No 429
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=87.88 E-value=31 Score=34.39 Aligned_cols=178 Identities=19% Similarity=0.271 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~ 217 (452)
.++.+.-.++++.|.+.|++.|=++..... ...+.+ ..++.+.+.+..+-++.+++ .+.+
T Consensus 18 ~id~~~~~~~i~~l~~~Gv~gl~~~GstGE--~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~------------ 83 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEAGVDGLVVLGSTGE--FYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTE------------ 83 (289)
T ss_dssp SB-HHHHHHHHHHHHHTTSSEEEESSTTTT--GGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHH------------
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHccCceEEEecCcchhHH------------
Confidence 478899999999999999999888643322 122322 23333333332222333322 1221
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 297 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~ 297 (452)
+ ..+-.+.|.+.|+|.+.+..+. + +..|.++.++-++++. ..-++++..|-.-.. ..
T Consensus 84 --~--------~i~~a~~a~~~Gad~v~v~~P~---~----~~~s~~~l~~y~~~ia---~~~~~pi~iYn~P~~---tg 140 (289)
T PF00701_consen 84 --E--------AIELARHAQDAGADAVLVIPPY---Y----FKPSQEELIDYFRAIA---DATDLPIIIYNNPAR---TG 140 (289)
T ss_dssp --H--------HHHHHHHHHHTT-SEEEEEEST---S----SSCCHHHHHHHHHHHH---HHSSSEEEEEEBHHH---HS
T ss_pred --H--------HHHHHHHHhhcCceEEEEeccc---c----ccchhhHHHHHHHHHH---hhcCCCEEEEECCCc---cc
Confidence 1 1235677888999999887652 1 3456666665554444 345677764433110 11
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE-EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~-vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
...+++.+.+++ + -...+.++|+.|- +.++.++++ ..+. .+. +.+++. + .+.++.+|++.+
T Consensus 141 ~~ls~~~l~~L~----~-~~nv~giK~s~~~--~~~~~~~~~----~~~~-~~~v~~G~d~--~----~~~~l~~G~~G~ 202 (289)
T PF00701_consen 141 NDLSPETLARLA----K-IPNVVGIKDSSGD--LERLIQLLR----AVGP-DFSVFCGDDE--L----LLPALAAGADGF 202 (289)
T ss_dssp STSHHHHHHHHH----T-STTEEEEEESSSB--HHHHHHHHH----HSST-TSEEEESSGG--G----HHHHHHTTSSEE
T ss_pred cCCCHHHHHHHh----c-CCcEEEEEcCchh--HHHHHHHhh----hccc-Ceeeeccccc--c----ccccccccCCEE
Confidence 234555555444 4 3579999998874 344444333 3333 243 344222 2 357778897643
No 430
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.87 E-value=9.3 Score=37.59 Aligned_cols=124 Identities=18% Similarity=0.117 Sum_probs=66.8
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ecCCCCC--CCCH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VGCPVEG--AIPP 302 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g~p~~~--r~d~ 302 (452)
+.++.+.++|.+.|-+.....+.+. ...+++.+ .+..+-+.+++.|+++.. ++.. ++.++.. +...
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~-~~~~~~~~----~~~~l~~~l~~~gl~i~~-~~~~~~~~~~~~~~~~~~r~~~~ 98 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERL-ARLDWSRE----QRLALVNALVETGFRVNS-MCLSAHRRFPLGSEDDAVRAQAL 98 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccch-hccCCCHH----HHHHHHHHHHHcCCceeE-EecccccccCCCCCCHHHHHHHH
Confidence 4788899999999998754321110 11223332 344566778889999753 2211 1111100 0112
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCc---CCCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCcCc
Q 012949 303 SKVAYVAKELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTYGQ 360 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT~---G~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~Gl 360 (452)
+.+.+.++.+.++|++.|.+.--. +.-.+.....++..++... -++.|.+|.|.+.-+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~ 164 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFM 164 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCccc
Confidence 356678888899999999885111 1112333333333333321 246799998865433
No 431
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.82 E-value=14 Score=37.13 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEEec--CCCCC-cccccCCHHHHHHHHHhccC-CceeEEe---cchhhhhhhhhhhhh
Q 012949 145 VPTGVKVELIRRLVSSG-LPVVEATS--FVSPK-WVPQLADARDVMEAVRDLEG-ARLPVLT---PNLKVILQRSILFQQ 216 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~G-v~~IEvG~--~~s~~-~~p~~~D~e~v~~~i~~~~~-~~l~~l~---~~~~~~i~r~~~~~~ 216 (452)
.+.++-.+.++.+.++| ++.||+-. |..+. ...-..+.+.+.+.++.+.. +.+++++ ++..
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~----------- 169 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT----------- 169 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch-----------
Confidence 36889999999999999 99999953 22111 00011244444444444322 1333333 2111
Q ss_pred ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHH--Hh-------hhc-CCCHHHHHHHHHHHHHHHHh-CCCcEE
Q 012949 217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF--SK-------SNI-NCSIEDSLVRYRAVAHAAKV-LSIPVR 285 (452)
Q Consensus 217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~--~~-------~~~-~~s~e~~l~~~~~~v~~Ak~-~G~~V~ 285 (452)
+ ..+-++.+.++|++.|.++....... .. ... +.+-........+.++.+++ .+++|.
T Consensus 170 ---~--------~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi 238 (301)
T PRK07259 170 ---D--------IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPII 238 (301)
T ss_pred ---h--------HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEE
Confidence 0 01245677789999887753221100 00 000 01100000111233344444 366654
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949 286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 343 (452)
Q Consensus 286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~ 343 (452)
+ . .+-.+++.+.++. .+|||.|.++=..=. .|.-+.++.+.+.+
T Consensus 239 ~-----~----GGI~~~~da~~~l----~aGAd~V~igr~ll~-~P~~~~~i~~~l~~ 282 (301)
T PRK07259 239 G-----M----GGISSAEDAIEFI----MAGASAVQVGTANFY-DPYAFPKIIEGLEA 282 (301)
T ss_pred E-----E----CCCCCHHHHHHHH----HcCCCceeEcHHHhc-CcHHHHHHHHHHHH
Confidence 1 1 2344666666554 469998888655433 67777777666644
No 432
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=87.70 E-value=75 Score=38.64 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred CccccCCCCCCC-CCHHHHHHH----HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCC------ceeEEe
Q 012949 133 GPRDGLQNEKNT-VPTGVKVEL----IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA------RLPVLT 201 (452)
Q Consensus 133 TLRDG~Q~~~~~-~~~~~k~~i----~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~------~l~~l~ 201 (452)
+++.+.-.++.. ++.++..+. ++.|.+.|+|.|-+ -.+.|..+...++..+... .+++++
T Consensus 144 sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllli---------ETi~d~~EakAal~a~~~~~~~~~~~lPv~v 214 (1229)
T PRK09490 144 SISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILI---------ETIFDTLNAKAAIFAVEEVFEELGVRLPVMI 214 (1229)
T ss_pred ccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEE---------eeeCCHHHHHHHHHHHHHHHhhcCCCCeEEE
Q ss_pred cchhhhhhhhhhhhh-ccchhhhhhhhccHHhHHHHH----HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949 202 PNLKVILQRSILFQQ-CHASVISSNLWVYLQGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 276 (452)
Q Consensus 202 ~~~~~~i~r~~~~~~-~~~~~i~~~~~~~~~~ie~a~----~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~ 276 (452)
.+++.+ ......++ +++.+. ..+++.|.+-++..+ +.+..+++.
T Consensus 215 ---------S~T~~d~~Gr~lsG~-------~~ea~~~~l~~~~~~avGlNCs~GP---------------~~m~~~l~~ 263 (1229)
T PRK09490 215 ---------SGTITDASGRTLSGQ-------TTEAFWNSLRHAKPLSIGLNCALGA---------------DELRPYVEE 263 (1229)
T ss_pred ---------EEEEECCCCccCCCC-------cHHHHHHHHhcCCCCEEEEcCCCcH---------------HHHHHHHHH
Q ss_pred HHhCCCcEEEEEEeeecCCCCC---CCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949 277 AKVLSIPVRGYVSCVVGCPVEG---AIPPSKVAYVAKELHDMG-CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV 352 (452)
Q Consensus 277 Ak~~G~~V~~~l~~~~g~p~~~---r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v 352 (452)
..+.. ..-..+--.-|-|... ..+|+.+.+.++.+.+.| +..|.=|= .-+|+.++.+.+.++..-|......
T Consensus 264 l~~~~-~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~ 339 (1229)
T PRK09490 264 LSRIA-DTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCC---GTTPEHIAAIAEAVAGLPPRKLPEI 339 (1229)
T ss_pred HHHhc-CCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecC---CCCHHHHHHHHHHHhcCCCCCCCCc
Q ss_pred EeC--------------------------------------CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 012949 353 HLH--------------------------------------DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG 394 (452)
Q Consensus 353 H~H--------------------------------------nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG 394 (452)
..+ .|+.-++.-+..-+++||++||+.+ |... ..+
T Consensus 340 ~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-g~~~------id~ 412 (1229)
T PRK09490 340 PVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINM-DEGM------LDS 412 (1229)
T ss_pred CcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCH
Q ss_pred cccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949 395 NVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPS 434 (452)
Q Consensus 395 NaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g~~~ 434 (452)
-..++.++..+.. ..+..-||..+-.-+..-++.+-|.++
T Consensus 413 ~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~I 456 (1229)
T PRK09490 413 EAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGI 456 (1229)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCE
No 433
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=87.63 E-value=11 Score=38.04 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=76.2
Q ss_pred HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
-+.|+.+|-...|-+--...+.++.|.-.-. ...+.+.++++.+|+. ..++.+ . .. +. +-++
T Consensus 139 ~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~-g~~~~i~~av~~~r~~~~~~kIeV--E------v~---tl----eea~ 202 (277)
T TIGR01334 139 AVKAVLAAGGVIHRIGLSETLLVFANHRTFL-NDNFDWGGAIGRLKQTAPERKITV--E------AD---TI----EQAL 202 (277)
T ss_pred HHHHHHhCCCcCeecCCchhheehHHHHHHh-CCcccHHHHHHHHHHhCCCCCEEE--E------CC---CH----HHHH
Confidence 3567788877666654434444444320000 0001344556666664 333432 1 11 22 4555
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
++.++|+|.|.| | -++|+++.+.++.+++..|...|++=. |.-..|..+=...|+|+|-++-.
T Consensus 203 ea~~~GaDiI~l-D---n~~~e~l~~~v~~l~~~~~~~~leasG----GI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 203 TVLQASPDILQL-D---KFTPQQLHHLHERLKFFDHIPTLAAAG----GINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHHcCcCEEEE-C---CCCHHHHHHHHHHHhccCCCEEEEEEC----CCCHHHHHHHHhcCCCEEEeCcc
Confidence 667899999998 5 589999999999987656665566643 56667777777899999866543
No 434
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=87.58 E-value=19 Score=39.17 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=90.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
+-++.+.+-|+..+-+.......+.....+.+.++.++.+.+.++.+++..- -+.+.+.+.. . -..+++.+.+.+
T Consensus 201 ~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~---~-R~~~~~~~~~~~ 276 (479)
T TIGR01431 201 RALEEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSP---L-RNKDKEELDNYI 276 (479)
T ss_pred HHHHHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---c-CCCCHHHHHHHH
Confidence 4667778889988888776555554444556889999999999988877542 1333344321 1 124667666666
Q ss_pred HHHHHC---CcC-EEEEcCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCCc--Cc-HHHHHHHHHHcCCCEEee
Q 012949 310 KELHDM---GCF-EISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTY--GQ-SLPNILISLQMGISTVDC 378 (452)
Q Consensus 310 ~~l~~~---Gad-~I~L~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd~--Gl-A~ANaLaAl~aGa~~VD~ 378 (452)
+.+.++ -.+ .+.+ |-+|-= .|....+.+..+++. .++++.+|+=.+. |. .-.|...||..|+++|.=
T Consensus 277 ~~a~~~k~~~p~~vvGf-DL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGH 354 (479)
T TIGR01431 277 KVAMELKEKYPDFVAGF-DLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGH 354 (479)
T ss_pred HHHHHHHhhCCCeEEEE-eccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccC
Confidence 665543 233 3333 776642 234444444433432 3468999998776 43 347999999999999854
Q ss_pred ccc
Q 012949 379 SVA 381 (452)
Q Consensus 379 Sv~ 381 (452)
.+.
T Consensus 355 G~~ 357 (479)
T TIGR01431 355 GFA 357 (479)
T ss_pred ccc
Confidence 443
No 435
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.55 E-value=8.4 Score=39.57 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
...+.++.+.++|++.|.+ |+.. ..+..+.++|+.+++.+|.++|.+ +|- .....+..++++|||.|-+.+.
T Consensus 94 ~~~~~~~~l~eagv~~I~v-d~~~-G~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVI-DSAH-GHSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEE-ECCC-CCcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence 3456788889999998887 4322 345788899999999988655555 222 4456778889999999987553
No 436
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=87.50 E-value=27 Score=36.44 Aligned_cols=86 Identities=17% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.+.++...++|+.+|.+-+ +.+|-. ...+|+. ...+.+.++++.+++.+..|.+.++ +|.|.. +.+.+.+-
T Consensus 104 ~e~L~~l~~~GvnrislGvQS~~d~v-L~~l~R~--~~~~~~~~ai~~~~~~~~~v~~dli--~GlPgq---t~~~~~~~ 175 (380)
T PRK09057 104 AGRFRGYRAAGVNRVSLGVQALNDAD-LRFLGRL--HSVAEALAAIDLAREIFPRVSFDLI--YARPGQ---TLAAWRAE 175 (380)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHH-HHHcCCC--CCHHHHHHHHHHHHHhCccEEEEee--cCCCCC---CHHHHHHH
Confidence 3578888999999998877 334432 2233332 1233444566778888877776666 566655 35666667
Q ss_pred HHHHHHCCcCEEEEc
Q 012949 309 AKELHDMGCFEISLG 323 (452)
Q Consensus 309 a~~l~~~Gad~I~L~ 323 (452)
++.+.+.+++.|.+-
T Consensus 176 l~~~~~l~p~~is~y 190 (380)
T PRK09057 176 LKEALSLAADHLSLY 190 (380)
T ss_pred HHHHHhcCCCeEEee
Confidence 777788899877765
No 437
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=87.46 E-value=3.9 Score=41.06 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHHH-CCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHH
Q 012949 297 EGAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQ 370 (452)
Q Consensus 297 ~~r~d~e~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~ 370 (452)
.+..|.+-+.++++.+.+ .|++.|.++-|+|= ++.++-.++++.+++..++ ++|-++. +++.--++..+..|-+
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999 99999999999885 7788888888888887754 5677777 7788888999999999
Q ss_pred cCCCEEeecc
Q 012949 371 MGISTVDCSV 380 (452)
Q Consensus 371 aGa~~VD~Sv 380 (452)
+||+.|=..-
T Consensus 98 ~Gad~v~v~~ 107 (293)
T PRK04147 98 LGYDAISAVT 107 (293)
T ss_pred cCCCEEEEeC
Confidence 9999876553
No 438
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=87.41 E-value=4.9 Score=43.46 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=13.4
Q ss_pred CChhhHHHHHHHHHHHhCCCCC
Q 012949 414 VDLRKLMLAGDFINKHLGRPSG 435 (452)
Q Consensus 414 iDl~~L~~la~~v~~~~g~~~p 435 (452)
.....+.++...+.+.+++|+.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~ 200 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVE 200 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceE
Confidence 4456666777777666655443
No 439
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.39 E-value=34 Score=34.31 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC--cCEEEEc----CCc--C---CCc
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLG----DTI--G---VGT 330 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G--ad~I~L~----DT~--G---~~~ 330 (452)
..+..++.+.. ..++.+.++.+.|. | .+++.+.+.++.+.+++ +|.|.|. -+. | ...
T Consensus 74 g~~~~~~~~~~---~~~~~~~pl~~qi~---g------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~ 141 (300)
T TIGR01037 74 GVEAFLEELKP---VREEFPTPLIASVY---G------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQD 141 (300)
T ss_pred CHHHHHHHHHH---HhccCCCcEEEEee---c------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccC
Confidence 45555554433 33455666655553 1 35789999999998764 7877663 111 1 247
Q ss_pred HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949 331 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378 (452)
Q Consensus 331 P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~ 378 (452)
|+.+.++++.+++.++ .+|.+-.-.+.--...-+..+.++|++.|.+
T Consensus 142 ~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 142 PELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 8999999999999874 4677765433333444555677899998864
No 440
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.13 E-value=6 Score=39.06 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=87.2
Q ss_pred HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949 152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~ 230 (452)
.+.+.+..+|.+.+-+..- +....-+ +.+.+++.++. .++. +.||.. -.+..++.++
T Consensus 23 ~m~~ai~aSg~evvTvalRR~~~~~~~---~~~~~~~~i~~---~~~~-lLPNTa--------Gc~tA~EAv~------- 80 (247)
T PF05690_consen 23 VMREAIEASGAEVVTVALRRVNLGSKP---GGDNILDYIDR---SGYT-LLPNTA--------GCRTAEEAVR------- 80 (247)
T ss_dssp HHHHHHHHTT-SEEEEECCGSTTTS-T---TCHHCCCCTTC---CTSE-EEEE-T--------T-SSHHHHHH-------
T ss_pred HHHHHHHHhCCcEEEEEEecccCCCCC---CCccHHHHhcc---cCCE-ECCcCC--------CCCCHHHHHH-------
Confidence 3556788899999988753 1111000 12344444432 2222 345543 1112222211
Q ss_pred HhHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 231 QGFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 231 ~~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
-.+.|.+. +.++|.+-+-..+..+. .+.++.+ ++.+...+.|+.|..|+. + ++ -++
T Consensus 81 -~A~laRe~~~t~wIKLEVi~D~~~L~-------PD~~etl-~Aae~Lv~eGF~VlPY~~-----~--------D~-v~a 137 (247)
T PF05690_consen 81 -TARLAREAFGTNWIKLEVIGDDKTLL-------PDPIETL-KAAEILVKEGFVVLPYCT-----D--------DP-VLA 137 (247)
T ss_dssp -HHHHHHHTTS-SEEEE--BS-TTT---------B-HHHHH-HHHHHHHHTT-EEEEEE------S---------H-HHH
T ss_pred -HHHHHHHHcCCCeEEEEEeCCCCCcC-------CChhHHH-HHHHHHHHCCCEEeecCC-----C--------CH-HHH
Confidence 33455554 78899987655543221 2333333 233444467999987664 1 11 388
Q ss_pred HHHHHCCcCEEE-EcCCc----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-HHHHHHHcCCC--EEeeccc
Q 012949 310 KELHDMGCFEIS-LGDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGIS--TVDCSVA 381 (452)
Q Consensus 310 ~~l~~~Gad~I~-L~DT~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-NaLaAl~aGa~--~VD~Sv~ 381 (452)
+++.++||..|. ++-.+ |+.+|..++.+++ +++ +|+-+ |-|++.+ -+-.|++.|+| .|+++|.
T Consensus 138 krL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~-vPvIv----DAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 138 KRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RAD-VPVIV----DAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp HHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGS-SSBEE----ES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred HHHHHCCCCEEEecccccccCcCCCCHHHHHHHHH----hcC-CcEEE----eCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 999999998665 44444 5566665555544 442 34555 5577754 67889999999 5588887
No 441
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=87.06 E-value=43 Score=37.35 Aligned_cols=166 Identities=18% Similarity=0.167 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
+.+++.-++=+..|.++|.+.+-++. |.+.+++.+....+.+ .+..++. +...- |..
T Consensus 37 T~D~~atv~Qi~~l~~aGceiVRvtv-------~~~~~a~~l~~I~~~l~~~G~~iPL-VADIH--------F~~----- 95 (611)
T PRK02048 37 TMDTEACVAQAKRIIDAGGEYVRLTT-------QGVREAENLMNINIGLRSQGYMVPL-VADVH--------FNP----- 95 (611)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHHhHHHHHHHHhhcCCCCCE-EEecC--------CCc-----
Confidence 45677778888999999999999975 4444444333333332 2223221 11111 110
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHH----------HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF----------SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~----------~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~ 291 (452)
+-...|++. ++.|||--. |=.. ....+....+..-+++..+++.||++|..++.-+-
T Consensus 96 ---------~~A~~a~~~-v~kiRINPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN-- 162 (611)
T PRK02048 96 ---------KVADVAAQY-AEKVRINPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN-- 162 (611)
T ss_pred ---------HHHHHHHHh-hCCEEECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--
Confidence 122345556 888888421 1000 00111122334446777899999999999984332
Q ss_pred ecCCCC---CC--CCHHHHH----HHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949 292 VGCPVE---GA--IPPSKVA----YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMA 343 (452)
Q Consensus 292 ~g~p~~---~r--~d~e~l~----~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~ 343 (452)
.|+-.. .+ .+|+-++ +.++.+.+.|-+ .|+++-|.-..+-...+.++..+.+
T Consensus 163 ~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~ 225 (611)
T PRK02048 163 HGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA 225 (611)
T ss_pred CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 222110 11 1444333 356677778865 6677777654444445555555543
No 442
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.99 E-value=37 Score=34.37 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHH----HCCCCEEEEecCC-----CCCcc--cccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhh
Q 012949 146 PTGVKVELIRRLV----SSGLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILF 214 (452)
Q Consensus 146 ~~~~k~~i~~~L~----~~Gv~~IEvG~~~-----s~~~~--p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~ 214 (452)
+.++..++++.|. ++|++.+==|+|- ||.-+ |.+.+.-++++.+++-.++ ++++--.
T Consensus 28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Gl--pvvTeV~---------- 95 (281)
T PRK12457 28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGV--PVITDVH---------- 95 (281)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--ceEEEeC----------
Confidence 5688889999876 5999887666542 33211 2221223344444443343 3333211
Q ss_pred hhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC
Q 012949 215 QQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 294 (452)
Q Consensus 215 ~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~ 294 (452)
..++++.+.+. +|.+.|-.-. ..+ -++++.+.+.|..|- |--
T Consensus 96 --------------~~~~~~~~ae~-vDilQIgAr~-----~rn------------tdLL~a~~~t~kpV~--lKr---- 137 (281)
T PRK12457 96 --------------EVEQAAPVAEV-ADVLQVPAFL-----ARQ------------TDLVVAIAKTGKPVN--IKK---- 137 (281)
T ss_pred --------------CHHHHHHHhhh-CeEEeeCchh-----hch------------HHHHHHHhccCCeEE--ecC----
Confidence 12377777777 8999886531 111 155566667777664 221
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC---cCCCc-HHHHHHHHHHHHHhCCCccEEE---Ee-----------CC
Q 012949 295 PVEGAIPPSKVAYVAKELHDMGCFEISLGDT---IGVGT-PGTVVPMLEAVMAVVPVEKLAV---HL-----------HD 356 (452)
Q Consensus 295 p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT---~G~~~-P~~v~~li~~l~~~~p~~~l~v---H~-----------Hn 356 (452)
.--.+++.+...++.+...|...|.||.= .|+-. +.++.. |..+++..+..||-+ |. =-
T Consensus 138 --Gqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G 214 (281)
T PRK12457 138 --PQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGG 214 (281)
T ss_pred --CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCC
Confidence 11145788888999999999998888862 12211 122222 344555434444544 54 23
Q ss_pred CcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 357 TYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 357 d~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
++-+....+.+|+.+|||.+=.=+-
T Consensus 215 ~re~v~~larAAvA~GaDGl~iEvH 239 (281)
T PRK12457 215 RRRQVLDLARAGMAVGLAGLFLEAH 239 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4456788899999999995544333
No 443
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=86.95 E-value=11 Score=39.18 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST 375 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~ 375 (452)
.+++.+.+.++.+.+.|+.+|.|. + |- ..++.+.++++.+++.+|.+.+++. -+...-...-.++|++.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence 378888888988889999988887 2 32 3356788888888888875443331 14333333344689988
Q ss_pred EeecccC
Q 012949 376 VDCSVAG 382 (452)
Q Consensus 376 VD~Sv~G 382 (452)
+...+--
T Consensus 176 ~~i~lET 182 (366)
T TIGR02351 176 VTVYQET 182 (366)
T ss_pred EEEEeec
Confidence 7765554
No 444
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=86.91 E-value=7.7 Score=37.63 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcH----HHHHHHHHHcCCCEEeecc
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQS----LPNILISLQMGISTVDCSV 380 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA----~ANaLaAl~aGa~~VD~Sv 380 (452)
.+-.+++.++|++.|.+ |-+---.|. .+.++++. .++|+ -+=|| +.-.+.|..+|+|.|-+|+
T Consensus 88 lkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~---------~l~MAD~St~ee~l~a~~~G~D~IGTTL 155 (229)
T COG3010 88 LKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPG---------QLAMADCSTFEEGLNAHKLGFDIIGTTL 155 (229)
T ss_pred HHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCC---------cEEEeccCCHHHHHHHHHcCCcEEeccc
Confidence 34556788899999999 766677887 77777776 33443 33333 5677889999999999999
Q ss_pred cCCCC
Q 012949 381 AGLGG 385 (452)
Q Consensus 381 ~GlGe 385 (452)
.|+=+
T Consensus 156 sGYT~ 160 (229)
T COG3010 156 SGYTG 160 (229)
T ss_pred ccccC
Confidence 99865
No 445
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=86.71 E-value=40 Score=40.73 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHC-CcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCc--------------cEEEEe---------
Q 012949 300 IPPSKVAYVAKELHDM-GCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVE--------------KLAVHL--------- 354 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~-Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~--------------~l~vH~--------- 354 (452)
.+|+.+.+.++.+.+. |+..|. -|-| +|+.++.+-+.++..-|.. .+.+.-
T Consensus 273 ~~p~~~a~~~~~~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGE 348 (1178)
T TIGR02082 273 LTPDELAKALADFAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGE 348 (1178)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEee
Confidence 4688888888888887 588776 3344 9999999988886432310 111110
Q ss_pred ---------------CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC----CCCCCCC
Q 012949 355 ---------------HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVD 415 (452)
Q Consensus 355 ---------------Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~----Gi~t~iD 415 (452)
-.|+.-++.-+..-+++||++||+.+. ... ..+-..++.++..+... .+...||
T Consensus 349 r~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-~~~------vd~~eem~rvv~~i~~~~~~~~vPlsID 421 (1178)
T TIGR02082 349 RTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-YGM------LDGVAAMKRFLNLLASEPDISTVPLMLD 421 (1178)
T ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-CCC------CCHHHHHHHHHHHHHhccCCCCCeEEEe
Confidence 022334556666777999999999864 222 44555666666666532 3434567
Q ss_pred hhhHHHHHHHHHH
Q 012949 416 LRKLMLAGDFINK 428 (452)
Q Consensus 416 l~~L~~la~~v~~ 428 (452)
..+-.-+..-++.
T Consensus 422 S~~~~v~eaaLk~ 434 (1178)
T TIGR02082 422 SSEWAVLEAGLKC 434 (1178)
T ss_pred CCcHHHHHHHHHh
Confidence 6665554444444
No 446
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=86.69 E-value=8.4 Score=37.94 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEcCC-cC-----CCcHHH
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGDT-IG-----VGTPGT 333 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~-d~e~l~~~a~~l~~~Gad~I~L~DT-~G-----~~~P~~ 333 (452)
.|.+|.++.++++++.. .++|.+-+- .+-- ++..+.+.++.+.++|+..|.|-|. .| +..+++
T Consensus 52 lt~~e~~~~~~~I~~~~---~iPv~vD~d-------~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee 121 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV---SIPVIVDAD-------TGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEE 121 (238)
T ss_dssp S-HHHHHHHHHHHHHHS---SSEEEEE-T-------TTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHH
T ss_pred CCHHHHHHHHHHHHhhh---cCcEEEEcc-------cccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHH
Confidence 35677777766665544 677764443 2322 4899999999999999999999999 34 457788
Q ss_pred HHHHHHHHHHhCCCccEEEEeCCC--------cCcHHHHHHHHHHcCCCEEe
Q 012949 334 VVPMLEAVMAVVPVEKLAVHLHDT--------YGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 334 v~~li~~l~~~~p~~~l~vH~Hnd--------~GlA~ANaLaAl~aGa~~VD 377 (452)
..+.|++.++...+..+-+=.--| +--|+.-+.+-.+||||.|=
T Consensus 122 ~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~if 173 (238)
T PF13714_consen 122 MVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIF 173 (238)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 888888888765332233333322 23456677778899999663
No 447
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=86.66 E-value=25 Score=36.97 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~--s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.+-+..-+-.....+|+ +.++++ ++++.+++.+..|.+.++ +|-|-. +.+.+.+
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~----~ai~~~~~~~~~v~~DlI--~GlPgq---t~e~~~~ 181 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAI----KTIEAANTIFPRVSFDLI--YARSGQ---TLKDWQE 181 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHH----HHHHHHHHhCCcEEEEee--cCCCCC---CHHHHHH
Confidence 45788888999999998874433233333444 444444 556777777667776676 566654 3677777
Q ss_pred HHHHHHHCCcCEEEEc
Q 012949 308 VAKELHDMGCFEISLG 323 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L~ 323 (452)
-++.+.+.+++.|.+=
T Consensus 182 ~l~~~~~l~p~his~y 197 (390)
T PRK06582 182 ELKQAMQLATSHISLY 197 (390)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 8888888898877663
No 448
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=86.51 E-value=16 Score=36.83 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=56.1
Q ss_pred hHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++..++.| ++.|-+.-+..|. ...|.+|-.+.++.+++.++. .++|.+.+ +..+.+...++++
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~-----~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv---------~~~~t~~~i~la~ 90 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGEN-----FMLSTEEKKEIFRIAKDEAKD-QIALIAQV---------GSVNLKEAVELGK 90 (290)
T ss_pred HHHHHHhCCCcCEEEECCccccc-----ccCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHH
Confidence 667777888 8888777666664 234666666655555555432 23443222 1234566667777
Q ss_pred HHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhC
Q 012949 311 ELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVV 345 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~ 345 (452)
.+.+.|+|.|.+.=. .-..+++++.+.++.+.+..
T Consensus 91 ~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 91 YATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred HHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 777777775555222 22234566666666665444
No 449
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=86.40 E-value=4 Score=35.44 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=43.6
Q ss_pred HHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949 274 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353 (452)
Q Consensus 274 v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH 353 (452)
++.+++.|++...++- |+....+.-....+.+.+.++|...+.++=+.+-.+++.+..+.+.+.+ .|. |+-+|
T Consensus 20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h 92 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH 92 (110)
T ss_dssp HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence 3567789999775553 4432222223444667778899999999999999999999998877765 565 67677
Q ss_pred eCCC
Q 012949 354 LHDT 357 (452)
Q Consensus 354 ~Hnd 357 (452)
|...
T Consensus 93 C~sG 96 (110)
T PF04273_consen 93 CRSG 96 (110)
T ss_dssp -SCS
T ss_pred CCCC
Confidence 6654
No 450
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=86.36 E-value=11 Score=36.16 Aligned_cols=118 Identities=15% Similarity=0.078 Sum_probs=66.6
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCH-HHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPP-SKVAYV 308 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~-e~l~~~ 308 (452)
.++.+.+.|++.+.+...... +.+..+++.+++.|..+.+-.. .+++... ..+. +.+.++
T Consensus 68 ~~~~~~~~gad~vTvh~~~g~---------------~~l~~~~~~~~~~~~~v~~v~~--lss~~~~~~~~~~~~~v~~~ 130 (213)
T TIGR01740 68 QYESKIKQGADMVNVHGVAGS---------------ESVEAAKEAASEGGRGLLAVTE--LTSMGSLDYGEDTMEKVLEY 130 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCCH---------------HHHHHHHHHhhcCCCeEEEEEc--CCCCChhhhCcCHHHHHHHH
Confidence 456678899999998765443 4455677777877755432221 1223221 2223 566777
Q ss_pred HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh----CCCccEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 012949 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV----VPVEKLAVHLH-DTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~----~p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~V 376 (452)
++...+.|.+.+. ..|..+..+ +.+... .|+ |....= .+-..-++|.-.+.++||+.+
T Consensus 131 a~~~~~~g~~g~v-------~~~~~~~~i-r~~~~~~~~vtPG--I~~~g~~~~dq~~~~~~~~~~~~Gad~i 193 (213)
T TIGR01740 131 AKEAKAFGLDGPV-------CSAEEAKEI-RKFTGDFLILTPG--IRLQSKGADDQQRVVTLEDAKEAGADVI 193 (213)
T ss_pred HHHhhhcCCeEEE-------eCHHHHHHH-HHhcCCceEEeCC--cCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 7777777776442 345554443 222111 244 222221 223345678888899999966
No 451
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=86.33 E-value=12 Score=37.96 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCC-CcHHHHHHHHHHHHHh
Q 012949 268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAV 344 (452)
Q Consensus 268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~-~~P~~v~~li~~l~~~ 344 (452)
..+.++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.++. .|.+... ..+ ..+..+..++..+.++
T Consensus 4 v~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~ 73 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPA-----FN-----INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEA 73 (288)
T ss_pred ccHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHh
Confidence 3456788999999987752 21 13578888899999998877 4444332 222 3366778888877777
Q ss_pred CC-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949 345 VP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG 407 (452)
Q Consensus 345 ~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~ 407 (452)
.+ .+|+.+| =|.|.-......|+++|.+ ++|+|-..+-+ | .-|-+++...+.
T Consensus 74 ~~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~ 129 (288)
T TIGR00167 74 YPYGVPVALH--LDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE---------NIELTKKVVERAHK 129 (288)
T ss_pred ccCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 62 3466655 4777788999999999998 77999876655 4 344555555553
No 452
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=86.27 E-value=4.5 Score=41.67 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcH---HHHHHHHHHH
Q 012949 267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTP---GTVVPMLEAV 341 (452)
Q Consensus 267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P---~~v~~li~~l 341 (452)
+-.+.++.+.|++.|+-|-+ |. -.+.+.+..+++.+.+.+.. .|.+.... .+..+ ..+...+..+
T Consensus 9 lv~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~ 78 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPA-----YN-----FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY 78 (321)
T ss_pred ccCHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence 45567888999999987752 21 23578888899999998876 55554433 22222 2233344444
Q ss_pred HHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949 342 MAVVP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG 385 (452)
Q Consensus 342 ~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe 385 (452)
.++.. .+|+.+|. |.|.-......|+++|.+ ++|+|-..+-+
T Consensus 79 a~~a~~~VPV~lHL--DHg~~~e~i~~ai~~GftSVMiD~S~lp~ee 123 (321)
T PRK07084 79 AKELGCPIPIVLHL--DHGDSFELCKDCIDSGFSSVMIDGSHLPYEE 123 (321)
T ss_pred HHHcCCCCcEEEEC--CCCCCHHHHHHHHHcCCCEEEeeCCCCCHHH
Confidence 44442 34666655 667778899999999998 77998765444
No 453
>PLN02433 uroporphyrinogen decarboxylase
Probab=86.20 E-value=4.8 Score=41.47 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCcCEEEEcC-CcCCCcHHHHHHHHH--------HHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949 303 SKVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLE--------AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 373 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~li~--------~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa 373 (452)
+.+.++++...++||+.|.+.| +.|.++|+...+++. .+++..+..++.+|.+.+. ...-.-.+.|+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~ 254 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC
Q ss_pred CEEee
Q 012949 374 STVDC 378 (452)
Q Consensus 374 ~~VD~ 378 (452)
+.+..
T Consensus 255 ~~i~~ 259 (345)
T PLN02433 255 DVIGL 259 (345)
T ss_pred CEEEc
No 454
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=86.10 E-value=25 Score=31.50 Aligned_cols=178 Identities=19% Similarity=0.124 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
+.-.++++.+.+.|++.++++... ++.... ....+.+..+....+..+.+-. .+.. .+..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--- 73 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDA-------------AAAV--- 73 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCc-------------hhhh---
Confidence 567889999999999999999753 222111 1100123333322233222211 1000 0000
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPS 303 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e 303 (452)
....+.+.++|.+.|.+-...-.. .+...+.++.+++. ++.+...+.. .. +.+
T Consensus 74 ----~~~a~~~~~~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~ 128 (200)
T cd04722 74 ----DIAAAAARAAGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELA 128 (200)
T ss_pred ----hHHHHHHHHcCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccc
Confidence 001247888999999887653211 12234455555654 6666543321 11 011
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCcCCCc----HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEee
Q 012949 304 KVAYVAKELHDMGCFEISLGDTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDC 378 (452)
Q Consensus 304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~----P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~ 378 (452)
.. .+.++|++.|.+....+... +......++.+++. +..++.. +-|... .+...++++||+.|.+
T Consensus 129 ~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 129 AA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred hh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 10 16788999998866544321 11112334444443 3345554 446666 7888888999998865
No 455
>PRK09206 pyruvate kinase; Provisional
Probab=86.02 E-value=51 Score=35.80 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc--CCceeEEecchhhhhhhhhhhhhccchhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE--GARLPVLTPNLKVILQRSILFQQCHASVI 222 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~--~~~l~~l~~~~~~~i~r~~~~~~~~~~~i 222 (452)
++..++.. ++...+.|+|+|-+.|-.++ .|-+++.+.+.... .+.+.+-+-...
T Consensus 170 ltekD~~d-i~f~~~~~vD~ia~SFVr~~------~Dv~~~r~~l~~~~~~~~~iiaKIEt~e----------------- 225 (470)
T PRK09206 170 LAEKDKQD-LIFGCEQGVDFVAASFIRKR------SDVLEIREHLKAHGGENIQIISKIENQE----------------- 225 (470)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHcCCCCceEEEEECCHH-----------------
Confidence 66666666 47777999999988653332 23344444443321 222222222211
Q ss_pred hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee---ecCCCCCC
Q 012949 223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV---VGCPVEGA 299 (452)
Q Consensus 223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~---~g~p~~~r 299 (452)
-.+.++..++. +|.|.|. -.|.-.+ ...++......++++.|+++|.+|.+.-.+- .-.| +
T Consensus 226 ------av~nldeIl~~-~DgImVa--RGDLgve----lg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np---~ 289 (470)
T PRK09206 226 ------GLNNFDEILEA-SDGIMVA--RGDLGVE----IPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNP---R 289 (470)
T ss_pred ------HHHhHHHHHHh-CCEEEEC--cchhhhh----cCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---C
Confidence 12345555555 7766553 3343222 2255666667789999999999975221110 1122 3
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCc---cEEEEe----C-CCcCcHHHHHHHHHH
Q 012949 300 IPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVE---KLAVHL----H-DTYGQSLPNILISLQ 370 (452)
Q Consensus 300 ~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~---~l~vH~----H-nd~GlA~ANaLaAl~ 370 (452)
.+..++.+++....+ |+|.|.|. -|+=...|.+..+++..+..+.-.. .+..+. | -...+|.+...+|..
T Consensus 290 PTRAEvsDVanav~d-G~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~ 368 (470)
T PRK09206 290 PTRAEAGDVANAILD-GTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEK 368 (470)
T ss_pred CCchhhHHHHHHhhh-CCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhc
Confidence 345677778877665 89999994 4555668988887777776543210 011111 1 113355666667778
Q ss_pred cCCC-EEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCCCC
Q 012949 371 MGIS-TVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGSK 437 (452)
Q Consensus 371 aGa~-~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p~~ 437 (452)
.+++ +|=.|-.|--. + |-+|- -+.++-+.+...|.-. |+.+ .-|.+.+...+.......|.--+..
T Consensus 369 l~a~aIv~~T~sG~tA~~is~~RP~~pI-ia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd 447 (470)
T PRK09206 369 LDAPLIVVATQGGKSARSVRKYFPDATI-LALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGD 447 (470)
T ss_pred CCCCEEEEECCCcHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence 8887 55556655321 0 11111 2234556776666653 6543 2355555555544444566655555
Q ss_pred ccc
Q 012949 438 TAI 440 (452)
Q Consensus 438 ~pi 440 (452)
.-+
T Consensus 448 ~vv 450 (470)
T PRK09206 448 VVV 450 (470)
T ss_pred EEE
Confidence 444
No 456
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.94 E-value=9.8 Score=39.62 Aligned_cols=117 Identities=11% Similarity=0.005 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC----cCCCcHH-----------
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT----IGVGTPG----------- 332 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT----~G~~~P~----------- 332 (452)
.+.++.+.|++.++-|-+ |. -.+.+.+..+++.+.+++.. .|.+... .+..+.+
T Consensus 3 ~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~ 72 (345)
T cd00946 3 DVLKLFDYAKENGFAIPA-----VN-----CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGA 72 (345)
T ss_pred HHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhH
Confidence 456788999999987642 21 23678888899999999876 5555443 1222111
Q ss_pred -HHHHHHHHHHHhCCCccEEEEeCCCcCcH-----HH--------HHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-
Q 012949 333 -TVVPMLEAVMAVVPVEKLAVHLHDTYGQS-----LP--------NILISLQMGIS--TVDCSVAGLGGCPYAKGASGN- 395 (452)
Q Consensus 333 -~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-----~A--------NaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN- 395 (452)
.+..++..+.++++ +|+.+|. |.|.- .. ....|+++|.+ ++|+|-..+-+ |
T Consensus 73 ~~~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eE---------NI 140 (345)
T cd00946 73 IAAAHHVRSMAEHYG-VPVVLHT--DHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEE---------NI 140 (345)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEC--CCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHH---------HH
Confidence 57788888888775 4677665 44544 33 33445588987 88999887766 5
Q ss_pred ccHHHHHHHHHc
Q 012949 396 VATEDVVYMLSG 407 (452)
Q Consensus 396 aalE~vv~~L~~ 407 (452)
.-|.+++...+.
T Consensus 141 ~~TkevVe~Ah~ 152 (345)
T cd00946 141 EICKKYLERMAK 152 (345)
T ss_pred HHHHHHHHHHHH
Confidence 445667666663
No 457
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.66 E-value=39 Score=35.74 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCC------CcccccCCHHHHHHHHHhc-cCCceeEEe---cchhhhhhhhhhhh
Q 012949 146 PTGVKVELIRRLVSSGLPVVEATSFVSP------KWVPQLADARDVMEAVRDL-EGARLPVLT---PNLKVILQRSILFQ 215 (452)
Q Consensus 146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~------~~~p~~~D~e~v~~~i~~~-~~~~l~~l~---~~~~~~i~r~~~~~ 215 (452)
+.++-.++++.+.++|++.||+-..... ....-..|.+.+.+.++.+ ..+.+++++ |+......
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~------ 184 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIRE------ 184 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHH------
Q ss_pred hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--------------HHHhhhc-CCCHHHHHHHHHHHHHHHHhC
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--------------AFSKSNI-NCSIEDSLVRYRAVAHAAKVL 280 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--------------~~~~~~~-~~s~e~~l~~~~~~v~~Ak~~ 280 (452)
-++.+.++|++.|.++..... +|.+... +.|=.-......+.|..+++.
T Consensus 185 ----------------~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~ 248 (420)
T PRK08318 185 ----------------PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD 248 (420)
T ss_pred ----------------HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc
Q ss_pred ----CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949 281 ----SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 343 (452)
Q Consensus 281 ----G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~ 343 (452)
.+++.+ ..+-.+.+++.++.. +||+.|.++=..-.--|.-+.++++.+.+
T Consensus 249 ~~~~~ipIig---------~GGI~s~~da~e~i~----aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~ 302 (420)
T PRK08318 249 PETRGLPISG---------IGGIETWRDAAEFIL----LGAGTVQVCTAAMQYGFRIVEDMISGLSH 302 (420)
T ss_pred cccCCCCEEe---------ecCcCCHHHHHHHHH----hCCChheeeeeeccCCchhHHHHHHHHHH
No 458
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=85.63 E-value=41 Score=33.56 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC 217 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~ 217 (452)
.++.+.-.++++.|.+.|++-|=+.-.... .+.+.+ ..++++.+.+..+-++++++ .+.+
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE--~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~------------ 80 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGE--SPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATE------------ 80 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHH------------
Confidence 479999999999999999999887422211 133322 22333333222222333322 1111
Q ss_pred cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949 218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV- 296 (452)
Q Consensus 218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~- 296 (452)
+. .+-.+.|.++|+|.|.+..+.. +.-+.++.++-+..+.+. .+++|..|= .|.
T Consensus 81 --~~--------i~~a~~a~~~Gad~v~v~pP~y-------~~~~~~~i~~~~~~i~~~---~~~pi~lYn-----~P~~ 135 (285)
T TIGR00674 81 --EA--------ISLTKFAEDVGADGFLVVTPYY-------NKPTQEGLYQHFKAIAEE---VDLPIILYN-----VPSR 135 (285)
T ss_pred --HH--------HHHHHHHHHcCCCEEEEcCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CcHH
Confidence 11 2345677889999998876531 233556666655555443 467765332 343
Q ss_pred -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949 297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST 375 (452)
Q Consensus 297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~ 375 (452)
....+++.+.+++ +. ...+.++|+.|- ...+.+++ +..+. .+.+-.=+| ...+.++..|++.
T Consensus 136 tg~~l~~~~l~~L~----~~-~~v~giK~s~~d--~~~~~~l~----~~~~~-~~~v~~G~d-----~~~~~~~~~G~~G 198 (285)
T TIGR00674 136 TGVSLYPETVKRLA----EE-PNIVAIKEATGN--LERISEIK----AIAPD-DFVVLSGDD-----ALTLPMMALGGKG 198 (285)
T ss_pred hcCCCCHHHHHHHH----cC-CCEEEEEeCCCC--HHHHHHHH----HhcCC-CeEEEECch-----HHHHHHHHcCCCE
Confidence 2245666666554 33 368999999874 44444443 44453 344443333 2345778999763
Q ss_pred E
Q 012949 376 V 376 (452)
Q Consensus 376 V 376 (452)
.
T Consensus 199 ~ 199 (285)
T TIGR00674 199 V 199 (285)
T ss_pred E
Confidence 3
No 459
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=85.62 E-value=5.1 Score=42.05 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHH--HCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE-
Q 012949 300 IPPSKVAYVAKELH--DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV- 376 (452)
Q Consensus 300 ~d~e~l~~~a~~l~--~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V- 376 (452)
.+.+++..-+..+. ..|.+.|.=+=--++-+|+++.++|..||+..|..+|++-.=-..+....... +..+|+|.|
T Consensus 154 Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~It 232 (368)
T PF01645_consen 154 LPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFIT 232 (368)
T ss_dssp E-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEE
T ss_pred echhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEE
Confidence 34455555444444 44678888888888999999999999999999888999877665555544333 889999965
Q ss_pred -eecccCCCC
Q 012949 377 -DCSVAGLGG 385 (452)
Q Consensus 377 -D~Sv~GlGe 385 (452)
|+.=+|-|.
T Consensus 233 IDG~~GGTGA 242 (368)
T PF01645_consen 233 IDGAEGGTGA 242 (368)
T ss_dssp EE-TT---SS
T ss_pred EeCCCCCCCC
Confidence 444444433
No 460
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=85.57 E-value=26 Score=35.98 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEAT 168 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG 168 (452)
+-++..+++++.+.++|++.|-+.
T Consensus 183 ~~t~~~~~~~~~~~eaGad~i~i~ 206 (346)
T PRK00115 183 KLADATIAYLNAQIEAGAQAVQIF 206 (346)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Confidence 455667788888889999999765
No 461
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=85.50 E-value=28 Score=37.51 Aligned_cols=149 Identities=14% Similarity=0.085 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecC---CC----CCc-ccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS----PKW-VPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILF 214 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s----~~~-~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~ 214 (452)
..+.+..++-++.|.+.|++.|-+... .. ... .+...+..++++.+... .+.++...+.+..
T Consensus 196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--------- 266 (467)
T PRK14329 196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPK--------- 266 (467)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcc---------
Confidence 468889899999999999988865321 00 000 00011344555555432 2223222211110
Q ss_pred hhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEE
Q 012949 215 QQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVS 289 (452)
Q Consensus 215 ~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~ 289 (452)
. ...+-++...++ |...|++.+ +.||..++. .|+. ...+.+.++++.+|+. ++.+.++++
T Consensus 267 -----~-------l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~-m~R~--~t~~~~~~~i~~ir~~~~~~~i~~d~I 331 (467)
T PRK14329 267 -----D-------MTDDVLEVMAKYDNICKHIHLPVQSGSDRILKL-MNRK--YTREWYLDRIDAIRRIIPDCGISTDMI 331 (467)
T ss_pred -----c-------CCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEeEE
Confidence 0 112355666665 788999876 556544433 3332 1123444566777775 455665555
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
+|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 332 --vGfPgET---~edf~~tl~~i~~l~~~~~~ 358 (467)
T PRK14329 332 --AGFPTET---EEDHQDTLSLMEEVGYDFAF 358 (467)
T ss_pred --EeCCCCC---HHHHHHHHHHHHhhCCCeEe
Confidence 7778764 57777777777777776554
No 462
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=85.48 E-value=38 Score=33.00 Aligned_cols=110 Identities=25% Similarity=0.252 Sum_probs=67.4
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc--cE--EEEeCCCcCc
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE--KL--AVHLHDTYGQ 360 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~--~l--~vH~Hnd~Gl 360 (452)
|+.+.|+|.. ..+.+.-..-++.+.+.|++.|-+.=-+|.. ....+.+-++.+++..+.. ++ +.--=++..+
T Consensus 60 v~tVigFP~G-~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i 138 (221)
T PRK00507 60 VCTVIGFPLG-ANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEK 138 (221)
T ss_pred EEEEecccCC-CChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHH
Confidence 4455677875 4444554556677888999988776444433 2455666677777654322 22 2222223333
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 408 (452)
Q Consensus 361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~ 408 (452)
..-+..++++|+|+|=++-+ ++ +|.+.+|++-.+.+..
T Consensus 139 -~~a~~~~~~agadfIKTsTG-~~--------~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 139 -VKACEIAKEAGADFVKTSTG-FS--------TGGATVEDVKLMRETV 176 (221)
T ss_pred -HHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHh
Confidence 45667799999998877643 43 3458888887776653
No 463
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.43 E-value=11 Score=37.83 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHCC-c--CEEEEcCCcCCCcHHH------HHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHH
Q 012949 298 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPGT------VVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILI 367 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~G-a--d~I~L~DT~G~~~P~~------v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLa 367 (452)
+|-+.-.+..+.+.++..| + .++.|.|++-+ -.+. +..-++.+|+.+| ..+|++=+|+ +.-+..
T Consensus 124 TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s-----~eea~~ 197 (268)
T cd01572 124 TRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-----LEQLKE 197 (268)
T ss_pred CCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECC-----HHHHHH
Confidence 4544445666666666554 3 47888887633 2322 3455788888887 5578888887 577888
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC--CCC----CCCChhhHHHHHH
Q 012949 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL--GVE----TNVDLRKLMLAGD 424 (452)
Q Consensus 368 Al~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~--Gi~----t~iDl~~L~~la~ 424 (452)
|+++|||+|-. ||...|++-...+.. .+. -||+.+.+.++++
T Consensus 198 A~~~gaDyI~l---------------d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~ 245 (268)
T cd01572 198 ALEAGADIIML---------------DNMSPEELREAVALLKGRVLLEASGGITLENIRAYAE 245 (268)
T ss_pred HHHcCCCEEEE---------------CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHH
Confidence 99999998844 234566666655532 122 2788888877655
No 464
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=85.30 E-value=56 Score=35.58 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS 223 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~ 223 (452)
++..++.. ++...+.|+|+|-+.|-.++ .|-.++.+.+... ..+.+.+.+-...
T Consensus 172 ltekD~~d-i~f~~~~~vD~ia~SFV~~~------~di~~~r~~l~~~~~~~~iiakIEt~~------------------ 226 (480)
T cd00288 172 LSEKDKAD-LRFGVEQGVDMIFASFVRKA------SDVLEIREVLGEKGKDIKIIAKIENQE------------------ 226 (480)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHH------------------
Confidence 55566555 55667889999999763332 1333334444332 1222222221111
Q ss_pred hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-CCCCCH
Q 012949 224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPP 302 (452)
Q Consensus 224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-~~r~d~ 302 (452)
-.+.++..++. +|.|.|. -.|.-.. ...++......++++.|+++|.++...-.+ .-+.. ..+.+.
T Consensus 227 -----av~nldeI~~~-~DgImIa--rgDLg~e----~g~~~v~~~qk~ii~~~~~~gkpvi~ATqm-LeSM~~~p~PTR 293 (480)
T cd00288 227 -----GVNNFDEILEA-SDGIMVA--RGDLGVE----IPAEEVFLAQKMLIAKCNLAGKPVITATQM-LESMIYNPRPTR 293 (480)
T ss_pred -----HHHhHHHHHHh-cCEEEEC--cchhhhh----cChHHHHHHHHHHHHHHHHcCCCEEEEchh-HHHHhhCCCCCc
Confidence 12355555555 7766553 3453222 225677777788999999999987521111 00001 112345
Q ss_pred HHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCc-cEE-------EEe----CCCcCcHHHHHHHHH
Q 012949 303 SKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVE-KLA-------VHL----HDTYGQSLPNILISL 369 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~-~l~-------vH~----Hnd~GlA~ANaLaAl 369 (452)
.++.+++....+ |+|.|.|. -|+=.-.|-+..+++..+.++.-.. ... .+. .++.-+|.+....|-
T Consensus 294 AEvtDVanav~d-G~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~ 372 (480)
T cd00288 294 AEVSDVANAVLD-GTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAF 372 (480)
T ss_pred hhhHHHHHHHHh-CCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHH
Confidence 677777777665 89999994 4555568888877777776643210 000 010 122233334444566
Q ss_pred HcCCC-EEeecccCC
Q 012949 370 QMGIS-TVDCSVAGL 383 (452)
Q Consensus 370 ~aGa~-~VD~Sv~Gl 383 (452)
+.+++ +|-.|-.|-
T Consensus 373 ~l~akaIVv~T~SG~ 387 (480)
T cd00288 373 ELGAKAIVVLTTSGR 387 (480)
T ss_pred hcCCCEEEEECCCcH
Confidence 77887 666666654
No 465
>PRK06354 pyruvate kinase; Provisional
Probab=85.29 E-value=67 Score=35.92 Aligned_cols=256 Identities=14% Similarity=0.125 Sum_probs=135.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASV 221 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~ 221 (452)
.++..++..| +...+.|+|+|-+.|-.++ .|-.++.+.+....+ +.+.+-+-...
T Consensus 175 ~ltekD~~di-~f~~~~~vD~ia~SFVr~~------~dv~~~r~~l~~~~~~~~~iiaKIEt~e---------------- 231 (590)
T PRK06354 175 AITEKDREDL-IFGLEQGVDWIALSFVRNP------SDVLEIRELIEEHNGKHIPIIAKIEKQE---------------- 231 (590)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHhcCCCceEEEEECCHH----------------
Confidence 3666776665 6777999999998763222 133333344422112 22322222211
Q ss_pred hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee---ecCCCCC
Q 012949 222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV---VGCPVEG 298 (452)
Q Consensus 222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~---~g~p~~~ 298 (452)
-.+.++..++. +|.|.|. -.|.-.+ ...++.....+++++.|+++|.+|.+.-.+- ...|
T Consensus 232 -------av~nldeI~~~-~DgImVa--RGDLgve----~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p--- 294 (590)
T PRK06354 232 -------AIDNIDAILEL-CDGLMVA--RGDLGVE----IPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNP--- 294 (590)
T ss_pred -------HHHhHHHHHHh-cCEEEEc--cchhhcc----cCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---
Confidence 12245555555 7766554 3343222 2256666777889999999999975211110 1122
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-ccEEEE--e----CCCcC--cHHHHHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EKLAVH--L----HDTYG--QSLPNILIS 368 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH--~----Hnd~G--lA~ANaLaA 368 (452)
+.+..++.+++.+..+ |+|.|.|. -|+=...|.+..+++..+.++.-. .....+ . +++.. +|.+...+|
T Consensus 295 ~PTRAEvsDVaNav~D-G~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a 373 (590)
T PRK06354 295 RPTRAEASDVANAILD-GTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIA 373 (590)
T ss_pred CCCchhhHHHHHHhhh-CCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHH
Confidence 3345677778887765 89999997 465666898888887777764321 000001 0 12222 333444456
Q ss_pred HHcCCC-EEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCC
Q 012949 369 LQMGIS-TVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSG 435 (452)
Q Consensus 369 l~aGa~-~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p 435 (452)
-..+++ +|-.|-.|--. + |-.|- -..++-+.+...|.-+ |+.+ ..|.+.+.+.+....+..|.--+
T Consensus 374 ~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI-~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 452 (590)
T PRK06354 374 LQLDAAAIVTLTKSGATARNVSKYRPKTPI-LAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQ 452 (590)
T ss_pred hhcCCCEEEEECCChHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 788887 55666665322 0 11110 1223456666656543 6533 23555555555555555666555
Q ss_pred CCcccc
Q 012949 436 SKTAIA 441 (452)
Q Consensus 436 ~~~pi~ 441 (452)
..+-++
T Consensus 453 gd~vv~ 458 (590)
T PRK06354 453 GDLVVI 458 (590)
T ss_pred CCEEEE
Confidence 554443
No 466
>PLN02389 biotin synthase
Probab=85.22 E-value=6.9 Score=41.19 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHH
Q 012949 262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAV 341 (452)
Q Consensus 262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l 341 (452)
+.++.++ .++.+++.|+.-. .+...+........+.+++.++++.+.+.+.. ++=+.|.++++.+..|-++=
T Consensus 117 s~EeIl~----~a~~~~~~G~~~~-~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAG 188 (379)
T PLN02389 117 SKDDVLE----AAKRAKEAGSTRF-CMGAAWRDTVGRKTNFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAG 188 (379)
T ss_pred CHHHHHH----HHHHHHHcCCCEE-EEEecccCCCCChhHHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcC
Confidence 4455554 4566777787632 22211101111112457888888888766643 34588988888877775441
Q ss_pred HHhCCCccEE--------EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949 342 MAVVPVEKLA--------VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 408 (452)
Q Consensus 342 ~~~~p~~~l~--------vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~ 408 (452)
.+.++. .|+ +|...++---+.....|.++|...--+-|.|+|| ..-...+.+..|+.+
T Consensus 189 ld~~~~-~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE--------t~edrv~~l~~Lr~L 254 (379)
T PLN02389 189 LTAYNH-NLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE--------AEEDRVGLLHTLATL 254 (379)
T ss_pred CCEEEe-eecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC--------CHHHHHHHHHHHHhc
Confidence 222221 122 2333355556778888889999888889999998 123344455555544
No 467
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=85.20 E-value=18 Score=36.36 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=58.9
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 309 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a 309 (452)
....+-++|+|.|.+-.+..-.-.-. .+..|.++.+...+.+.+.++. .+. + ...|+.+..+++...+.+
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~v--v---~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLI--V---TDLPFMSYATPEQALKNA 98 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceE--E---eCCCcCCCCCHHHHHHHH
Confidence 34556678999888654433221111 1245677777666555444321 111 1 224555544677777766
Q ss_pred HHHHH-CCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949 310 KELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 310 ~~l~~-~Gad~I~L~DT~G~~~P~~v~~li~~l~~~ 344 (452)
.++.+ +||+.|.|-|. .++.++|+.+.+.
T Consensus 99 ~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~ 128 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG------EWLVETVQMLTER 128 (263)
T ss_pred HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence 66655 99999999995 4466777777664
No 468
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.19 E-value=13 Score=40.27 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASVISSN 225 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~ 225 (452)
++..+.++.|.+.|++.|-+-.-. . ..+.+.+.++++.. ..+++++-|.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~-g-------~~~~~~~~i~~i~~~~~~~~vi~g~~--------------------- 274 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH-G-------HQVKMISAIKAVRALDLGVPIVAGNV--------------------- 274 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC-C-------CcHHHHHHHHHHHHHCCCCeEEEecc---------------------
Confidence 566789999999999998874321 1 12345555554432 1344444322
Q ss_pred hhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949 226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304 (452)
Q Consensus 226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~ 304 (452)
++.+..+.++++|+|.|.+-...--.+.. ...++.+.. +..+.++++.+++.|++|.+ +.+-..+.+
T Consensus 275 --~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~-~~a~~~~~~~~~~~~~~via---------dGgi~~~~d 342 (475)
T TIGR01303 275 --VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQ-FSAVLECAAEARKLGGHVWA---------DGGVRHPRD 342 (475)
T ss_pred --CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCch-HHHHHHHHHHHHHcCCcEEE---------eCCCCCHHH
Confidence 23468889999999999976532221111 223333332 34455777888888887641 334334444
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE----EEeCCCcCcHHHHHHH
Q 012949 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA----VHLHDTYGQSLPNILI 367 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~----vH~Hnd~GlA~ANaLa 367 (452)
+ ++.+ .+||+.+.+.-. ++.- .+.|+..+. -.+-.-+|||..-++.
T Consensus 343 i---~kal-a~GA~~vm~g~~------------~ag~-~espg~~~~~~~g~~~k~yrGmgs~~a~~ 392 (475)
T TIGR01303 343 V---ALAL-AAGASNVMVGSW------------FAGT-YESPGDLMRDRDGRPYKESFGMASKRAVV 392 (475)
T ss_pred H---HHHH-HcCCCEEeechh------------hccc-ccCCCceEEeECCEEEEEEecccCHHHHh
Confidence 3 3433 489999887543 3332 335653232 2445578999765554
No 469
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=85.18 E-value=31 Score=31.82 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=48.1
Q ss_pred hHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.++..+++| ++.|.+....++-......+..... -+++.+.++.+++.|+++.+.+... .+-.+.+.+.++++
T Consensus 104 ~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~-~~~~~~~i~~l~~~gi~~~i~~~v~-----~~~~~~~ei~~~~~ 177 (191)
T TIGR02495 104 VLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNG-SNNILKSLEILLRSGIPFELRTTVH-----RGFLDEEDLAEIAT 177 (191)
T ss_pred HHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCch-HHHHHHHHHHHHHcCCCEEEEEEEe-----CCCCCHHHHHHHHH
Confidence 566677777 6888876654332222223332111 1466677889999999876444321 12344568888999
Q ss_pred HHHHCC
Q 012949 311 ELHDMG 316 (452)
Q Consensus 311 ~l~~~G 316 (452)
.+.+.|
T Consensus 178 ~l~~~~ 183 (191)
T TIGR02495 178 RIKENG 183 (191)
T ss_pred HhccCC
Confidence 888877
No 470
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=85.14 E-value=26 Score=33.02 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=80.8
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~ 308 (452)
.++++.+.+.|++.|.+-. ..|+.+. ..+.+.++.+.++..-..|.+ |- --+++.+.++
T Consensus 9 ~ed~~~a~~~Gvd~ig~i~~~~s~R~v----------~~~~a~~l~~~~~~~~~~V~v-----~v-----n~~~~~i~~i 68 (203)
T cd00405 9 LEDALAAAEAGADAIGFIFAPKSPRYV----------SPEQAREIVAALPPFVKRVGV-----FV-----NEDLEEILEI 68 (203)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCC----------CHHHHHHHHHhCCCCCcEEEE-----Ee-----CCCHHHHHHH
Confidence 4589999999999999865 3333211 145555555555542122221 10 0123444444
Q ss_pred HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCC
Q 012949 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGG 385 (452)
Q Consensus 309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGe 385 (452)
+.+.|+|.|.|-..- .|. .++.+++.++. +...+|.+...-+ ....+...|+|++ |+...+.++
T Consensus 69 ---a~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~~~i~~i~~~~~~~~---~~~~~~~~~aD~il~dt~~~~~~G 135 (203)
T cd00405 69 ---AEELGLDVVQLHGDE---SPE----YCAQLRARLGLPVIKAIRVKDEEDL---EKAAAYAGEVDAILLDSKSGGGGG 135 (203)
T ss_pred ---HHhcCCCEEEECCCC---CHH----HHHHHHhhcCCcEEEEEecCChhhH---HHhhhccccCCEEEEcCCCCCCCC
Confidence 556799999997542 333 34555655432 2222444433222 2245667899865 665444332
Q ss_pred CCCCCCCCCcccHHHHHHHHH-cC--CCCCCCChhhHHHHHHH
Q 012949 386 CPYAKGASGNVATEDVVYMLS-GL--GVETNVDLRKLMLAGDF 425 (452)
Q Consensus 386 cP~a~graGNaalE~vv~~L~-~~--Gi~t~iDl~~L~~la~~ 425 (452)
++|.+---+++..+. .. -+--|++.+.+.++.+.
T Consensus 136 ------g~g~~~~~~~l~~~~~~~PvilaGGI~~~Nv~~~i~~ 172 (203)
T cd00405 136 ------GTGKTFDWSLLRGLASRKPVILAGGLTPDNVAEAIRL 172 (203)
T ss_pred ------CCcceEChHHhhccccCCCEEEECCCChHHHHHHHHh
Confidence 455433333333332 11 01126777777776654
No 471
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=85.10 E-value=4 Score=40.22 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=60.9
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.|++.|++.|-+++.. +... ++...++.++++..+.++|+++|+.|.+ ..-.+.+.+..+++
T Consensus 138 ~qi~~A~~~GAd~VELhTG~---yA~a-~~~~~~~el~~~~~aa~~a~~lGL~VnA----------GHgLny~Nv~~i~~ 203 (239)
T PRK05265 138 EQIEAAAEVGADRIELHTGP---YADA-KTEAEAAELERIAKAAKLAASLGLGVNA----------GHGLNYHNVKPIAA 203 (239)
T ss_pred HHHHHHHHhCcCEEEEechh---hhcC-CCcchHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHhHHHHhh
Confidence 38999999999999998742 1111 1223355699999999999999999861 22345555555422
Q ss_pred HHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHH
Q 012949 311 ELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVM 342 (452)
Q Consensus 311 ~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~ 342 (452)
+ -+...++| ++.+=++.+..|+++.+.+.
T Consensus 204 -i--p~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~ 237 (239)
T PRK05265 204 -I--PGIEELNIGHAIIARALFVGLEEAVREMKRLMD 237 (239)
T ss_pred -C--CCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1 13556655 45555556666666655544
No 472
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=85.08 E-value=45 Score=35.73 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=58.2
Q ss_pred HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAY 307 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~ 307 (452)
.+.++...++|+.+|.+-+. .+|.- ...+|+. ...+.+.++++.+++.| ..|.+.++ +|.|.. +.+.+.+
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~v-Lk~lgR~--~~~~~~~~~i~~l~~~g~~~v~~DlI--~GlPgq---T~e~~~~ 234 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQV-RRRAGRK--DDREEVLARLEELVARDRAAVVCDLI--FGLPGQ---TPEIWQQ 234 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHH-HHHhCCC--CCHHHHHHHHHHHHhCCCCcEEEEEE--eeCCCC---CHHHHHH
Confidence 45788889999999998774 44432 3334442 12334446678888898 55776666 666755 4677888
Q ss_pred HHHHHHHCCcCEEEE
Q 012949 308 VAKELHDMGCFEISL 322 (452)
Q Consensus 308 ~a~~l~~~Gad~I~L 322 (452)
-++.+.+.+++.|.+
T Consensus 235 ~l~~~~~l~~~~is~ 249 (449)
T PRK09058 235 DLAIVRDLGLDGVDL 249 (449)
T ss_pred HHHHHHhcCCCEEEE
Confidence 888889999987764
No 473
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=84.99 E-value=16 Score=37.29 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CC
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VG 329 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~ 329 (452)
.+.++.+..+.++++. ..++|.+-+-.-| -++..+.+.++++.++|+..|.|-|.++ +.
T Consensus 60 l~~~e~~~~~~~I~~~---~~lPv~aD~dtGy-------G~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv 129 (294)
T TIGR02319 60 TSVSEQAINAKNIVLA---VDVPVIMDADAGY-------GNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLI 129 (294)
T ss_pred CCHHHHHHHHHHHHhc---cCCCEEEECCCCC-------CCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCcccc
Confidence 4566777766555443 4677765444322 2334478899999999999999999874 34
Q ss_pred cHHHHHHHHHHHHHhCCCccEEEE------eCCCcCcHHHHHHHHHHcCCCEEe
Q 012949 330 TPGTVVPMLEAVMAVVPVEKLAVH------LHDTYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 330 ~P~~v~~li~~l~~~~p~~~l~vH------~Hnd~GlA~ANaLaAl~aGa~~VD 377 (452)
.+++..+.|++.++.-.+.++-+= ....+--|+.-+.+-.++|||.|=
T Consensus 130 ~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~if 183 (294)
T TIGR02319 130 STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIF 183 (294)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEE
Confidence 667777777777764332222221 122345678888888899999653
No 474
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=84.95 E-value=27 Score=36.50 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=81.7
Q ss_pred hHHHHHHcCCCEEEEEecC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCCCC
Q 012949 232 GFEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEG 298 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~--------Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~~~ 298 (452)
..++|.++|.|.|.|-..- |+. +....+|-|.|+=.+.+.++++.+|+. |.+ |.+-|+..-..+..+
T Consensus 155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g 234 (370)
T cd02929 155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGG 234 (370)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCC
Confidence 5677888999999886432 333 222346788998888899999988884 543 333343210011112
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC----------cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG----------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368 (452)
Q Consensus 299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~----------~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA 368 (452)
-.+++...++++.+.+. +|.|.+. .|.. .+....++++.+|+.++. +|..-.- . .....+..+
T Consensus 235 ~~~~~e~~~~~~~l~~~-~D~i~vs--~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~--i-~~~~~~~~~ 307 (370)
T cd02929 235 IESEGEGVEFVEMLDEL-PDLWDVN--VGDWANDGEDSRFYPEGHQEPYIKFVKQVTSK-PVVGVGR--F-TSPDKMVEV 307 (370)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEec--CCCccccccccccCCccccHHHHHHHHHHCCC-CEEEeCC--C-CCHHHHHHH
Confidence 23677778888888765 6766552 2311 111124567778887653 4433221 1 123667788
Q ss_pred HHcC-CCEEe
Q 012949 369 LQMG-ISTVD 377 (452)
Q Consensus 369 l~aG-a~~VD 377 (452)
++.| +|.|-
T Consensus 308 l~~g~~D~V~ 317 (370)
T cd02929 308 VKSGILDLIG 317 (370)
T ss_pred HHcCCCCeee
Confidence 8877 67653
No 475
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.92 E-value=5.8 Score=40.24 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEE-EeCCCcCcHHHHHHHHHHcC
Q 012949 298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAV-HLHDTYGQSLPNILISLQMG 372 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~v-H~Hnd~GlA~ANaLaAl~aG 372 (452)
+..|.+-+.++++.+.+.|++.|.++-|+| .+++++-.++++.+++...+ +++-. ...|+..-|++.+..|-+.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 668999999999999999999999999999 67889999999999988754 44555 67888999999999999999
Q ss_pred CCEEeec
Q 012949 373 ISTVDCS 379 (452)
Q Consensus 373 a~~VD~S 379 (452)
||.+=+.
T Consensus 100 ad~il~v 106 (299)
T COG0329 100 ADGILVV 106 (299)
T ss_pred CCEEEEe
Confidence 9977543
No 476
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=84.86 E-value=60 Score=34.78 Aligned_cols=165 Identities=10% Similarity=0.048 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccC-C--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccc
Q 012949 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLA-D--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHA 219 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~-D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~ 219 (452)
.++.++..++++.+.+ .+|..|-++-. -|-+. | .+.+++.+++++.++..-+..... ++.+.
T Consensus 137 ~ls~eei~~~i~yI~~~p~I~~VlLSGG-----DPLll~d~~L~~iL~~L~~IphV~~IRI~TR~p-------vv~P~-- 202 (417)
T TIGR03820 137 IPSKEQILEGIEYIRNTPQIRDVLLSGG-----DPLLLSDDYLDWILTELRAIPHVEVIRIGTRVP-------VVLPQ-- 202 (417)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEeCC-----ccccCChHHHHHHHHHHhhcCCCceEEEeeccc-------ccccc--
Confidence 4688888999998887 58887766532 12222 2 244456666666554221111100 00000
Q ss_pred hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE--EEEEeeecCCCC
Q 012949 220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR--GYVSCVVGCPVE 297 (452)
Q Consensus 220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~--~~l~~~~g~p~~ 297 (452)
+.+.+-++...+.+. +.|.++.+-. .|..+...++++..++.|+.+. ..|. -|-
T Consensus 203 -------RIT~ell~~Lk~~~~--~~v~~h~nhp----------~Eit~~a~~Al~~L~~aGI~l~nQsVLL--kGV--- 258 (417)
T TIGR03820 203 -------RITDELVAILKKHHP--VWLNTHFNHP----------REITASSKKALAKLADAGIPLGNQSVLL--AGV--- 258 (417)
T ss_pred -------ccCHHHHHHHHhcCC--eEEEEeCCCh----------HhChHHHHHHHHHHHHcCCEEEeeceEE--CCc---
Confidence 012334455556664 4443433321 2445777788899999999874 2222 111
Q ss_pred CCCCHHHHHHHHHHHHHCCc--CEEEEcCCcCCCc----H-HHHHHHHHHHHHhCCC
Q 012949 298 GAIPPSKVAYVAKELHDMGC--FEISLGDTIGVGT----P-GTVVPMLEAVMAVVPV 347 (452)
Q Consensus 298 ~r~d~e~l~~~a~~l~~~Ga--d~I~L~DT~G~~~----P-~~v~~li~~l~~~~p~ 347 (452)
--+++.+.++.+.+.++|+ .-+..+|-+.... | .+..++++.++.++++
T Consensus 259 -ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 259 -NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred -CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 1267889999999999996 5889999776543 2 5578999999998865
No 477
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.80 E-value=11 Score=36.63 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=6.1
Q ss_pred HHHHHHHhCCCc
Q 012949 272 AVAHAAKVLSIP 283 (452)
Q Consensus 272 ~~v~~Ak~~G~~ 283 (452)
++++...+.|++
T Consensus 23 ~i~~~L~~~GV~ 34 (265)
T cd03174 23 EIAEALDEAGVD 34 (265)
T ss_pred HHHHHHHHcCCC
Confidence 344445555655
No 478
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=84.76 E-value=39 Score=33.19 Aligned_cols=131 Identities=16% Similarity=0.105 Sum_probs=75.3
Q ss_pred HcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 012949 238 AAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 316 (452)
Q Consensus 238 ~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G 316 (452)
+.+++.|.|-++..... .+...|...-.-.+.+.++++.+++.+.+|.+-+..- .+.....++++.+.++|
T Consensus 90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~--------~~~~~~~~~a~~l~~aG 161 (231)
T TIGR00736 90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN--------CIPLDELIDALNLVDDG 161 (231)
T ss_pred hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC--------CCcchHHHHHHHHHHcC
Confidence 34788777754432210 1111222222233566677788887788776544321 13346778999999999
Q ss_pred cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949 317 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380 (452)
Q Consensus 317 ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv 380 (452)
++.|.+ |..=...|..-.+.|+.+++.++.++|-- -++- ....-++..+++||+.|-.+=
T Consensus 162 ad~i~V-d~~~~g~~~a~~~~I~~i~~~~~~ipIIg--NGgI-~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 162 FDGIHV-DAMYPGKPYADMDLLKILSEEFNDKIIIG--NNSI-DDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred CCEEEE-eeCCCCCchhhHHHHHHHHHhcCCCcEEE--ECCc-CCHHHHHHHHHhCCCeEEEcH
Confidence 999988 42111223345678888888875333322 1111 223566777788999886543
No 479
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.73 E-value=18 Score=35.27 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=60.9
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-------CC--
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-------IP-- 301 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-------~d-- 301 (452)
+.++++.++|.+.|-+..+.. ....++-+.+++.|+++... ..-++....+. ..
T Consensus 19 ~~l~~~a~~Gf~~VEl~~~~~----------------~~~~~~~~~l~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09997 19 ARFEKAAQCGFRGVEFMFPYD----------------YDIEELKQVLASNKLEHTLH-NLPAGDWAAGERGIACIPGREE 81 (258)
T ss_pred HHHHHHHHhCCCEEEEcCCCC----------------CCHHHHHHHHHHcCCcEEEE-cCCCCccccCcCccccCCCcHH
Confidence 478899999999999865211 12334556677899998532 11111100000 01
Q ss_pred --HHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHH-HHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949 302 --PSKVAYVAKELHDMGCFEISLGDTIGV----GTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDT 357 (452)
Q Consensus 302 --~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd 357 (452)
.+.+.+.++.+.++|+..|.+. .|. ..+.+ ...+++.+++. . -++.|.+|.||.
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCL--VGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 2446778888889999988764 222 23333 23333333321 1 246899998764
No 480
>PRK05985 cytosine deaminase; Provisional
Probab=84.71 E-value=32 Score=35.73 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=89.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.++.+++.|.+.+..+.+.+. ....+ +.+.++++.|+++|+.+...+... .......+.++++
T Consensus 164 ~ll~~~l~~g~~~~gg~~p~~~-------~~~~~---~~l~~~~~~A~~~g~~i~~Hv~e~------~d~~~~~~~~~~e 227 (391)
T PRK05985 164 ELLDAALRAGADVVGGLDPAGI-------DGDPE---GQLDIVFGLAERHGVGIDIHLHEP------GELGAFQLERIAA 227 (391)
T ss_pred HHHHHHHHcCCCEEeCCCCCCc-------CCCHH---HHHHHHHHHHHHhCCCcEEeeCCC------CCccHHHHHHHHH
Confidence 3577788888774443322111 11122 455678899999999887554321 1112245556666
Q ss_pred HHHHCCcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 012949 311 ELHDMGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP 387 (452)
Q Consensus 311 ~l~~~Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP 387 (452)
.+.+.|.. .+.-+...+.+.+.++.++++.+++. + +.+ .|+. ..+.+++..-..+++|++..=+|=+.. .|
T Consensus 228 ~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~-g-~~v-~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD~~~--~~ 301 (391)
T PRK05985 228 RTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA-G-VAI-MTNA-PGSVPVPPVAALRAAGVTVFGGNDGIR--DT 301 (391)
T ss_pred HHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc-C-CeE-EEeC-CCCCCCCCHHHHHHCCCeEEEecCCCC--CC
Confidence 66666753 66667777888899888888888774 3 223 3553 346778889999999998654444322 25
Q ss_pred CCCCCCCcccHHHH
Q 012949 388 YAKGASGNVATEDV 401 (452)
Q Consensus 388 ~a~graGNaalE~v 401 (452)
|.|...++ .++.+
T Consensus 302 ~~p~~~~~-~~~~~ 314 (391)
T PRK05985 302 WWPYGNGD-MLERA 314 (391)
T ss_pred CcCCCCCc-HHHHH
Confidence 55543444 35443
No 481
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=84.70 E-value=29 Score=34.94 Aligned_cols=209 Identities=17% Similarity=0.174 Sum_probs=126.8
Q ss_pred cCCCCccEEEeCC---ccccCCCC---C-CC-CCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHH
Q 012949 121 KGIPRFVKIVEVG---PRDGLQNE---K-NT-VPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAV 189 (452)
Q Consensus 121 ~~~p~~V~I~D~T---LRDG~Q~~---~-~~-~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i 189 (452)
....+.+.|+|+. .+.|.... | .. =+.++.+.+++.+.++|.+.+--|-| .||.-+-.+ . ++-+..+
T Consensus 24 ~~~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl-g-e~gL~~l 101 (286)
T COG2876 24 REVKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL-G-EEGLKLL 101 (286)
T ss_pred ccccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc-C-HHHHHHH
Confidence 3445567788865 44443211 1 12 46789999999999999999999854 355422222 2 2334444
Q ss_pred Hhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHH
Q 012949 190 RDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 268 (452)
Q Consensus 190 ~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~ 268 (452)
++. ....+++++.-+ ..++++.+.+. +|.+.|-.. + ++
T Consensus 102 ~~a~~~~Gl~vvtEvm------------------------~~~~~e~~~~y-~DilqvGAR-----N-----------MQ 140 (286)
T COG2876 102 KRAADETGLPVVTEVM------------------------DVRDVEAAAEY-ADILQVGAR-----N-----------MQ 140 (286)
T ss_pred HHHHHHcCCeeEEEec------------------------CHHHHHHHHhh-hhHHHhccc-----c-----------hh
Confidence 432 123344444222 12488888776 777776542 1 11
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc-----HHHH-HHHHHHHH
Q 012949 269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT-----PGTV-VPMLEAVM 342 (452)
Q Consensus 269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~-----P~~v-~~li~~l~ 342 (452)
+. ++.+.+=+.+.+|- |..- --.+.+++...|+-+...|-..|.||-- |+-+ +... -.-|..+|
T Consensus 141 NF-~LLke~G~~~kPvL--LKRg------~~aTieEwL~AAEYI~s~GN~~vILCER-GIRtfe~~TRntLDi~aV~~~k 210 (286)
T COG2876 141 NF-ALLKEVGRQNKPVL--LKRG------LSATIEEWLNAAEYILSHGNGNVILCER-GIRTFEKATRNTLDISAVPILK 210 (286)
T ss_pred hh-HHHHHhcccCCCeE--EecC------ccccHHHHHHHHHHHHhCCCCcEEEEec-ccccccccccceechHHHHHHH
Confidence 11 23344444556664 2221 1246788888999999999888989863 3333 3221 12245555
Q ss_pred Hh--CCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949 343 AV--VPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVAGL 383 (452)
Q Consensus 343 ~~--~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 383 (452)
+. +|.+ +.. |.-+..-+-..-+.+|+.+|||.+-..|..=
T Consensus 211 q~THLPVi-vDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~ 253 (286)
T COG2876 211 QETHLPVI-VDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPD 253 (286)
T ss_pred hhcCCCEE-ECCCCcccchhhHHHHHHHHHhccCCeeEEEecCC
Confidence 54 4642 333 8888899999999999999999998888753
No 482
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=84.70 E-value=12 Score=36.95 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=51.2
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+.+++|++.|++.|-+.+.. +........++..++++.+++++|+++|+.|.+ ..-.+.+.+..+++
T Consensus 135 ~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA----------GHgLny~Nv~~i~~ 201 (234)
T cd00003 135 EQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVNA----------GHGLNYENVKPIAK 201 (234)
T ss_pred HHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHHHHHHHh
Confidence 38899999999999998742 111111223455699999999999999999862 22345566665554
Q ss_pred HHHHCCcCEEEEc
Q 012949 311 ELHDMGCFEISLG 323 (452)
Q Consensus 311 ~l~~~Gad~I~L~ 323 (452)
+ -+...++|.
T Consensus 202 -i--p~i~ElnIG 211 (234)
T cd00003 202 -I--PGIAELNIG 211 (234)
T ss_pred -C--CCCeEEccC
Confidence 2 246666653
No 483
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=84.67 E-value=8.6 Score=37.63 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=63.3
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee-----ec--CCCC-C-CCC
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV-----VG--CPVE-G-AIP 301 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~-----~g--~p~~-~-r~d 301 (452)
+.++.+.++|.+.|-++......+ ....+ ...+.++-+.+++.|++|.. +... +. .++. . +..
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~---~~~~~----~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~~~r~~~ 88 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAF---APDLK----AGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDEHMRRES 88 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCcccc---ccccC----chHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCHHHHHHH
Confidence 488999999999999864211100 00111 12345566778899998853 2110 00 0000 0 012
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCC-cCC-CcHHH-HHHHHHHHHHh---C--CCccEEEEeCCCc
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDT-IGV-GTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDTY 358 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT-~G~-~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd~ 358 (452)
.+++.+.++.+...|++.|.+.=+ .|. .++.+ ...+++.++.. . -++.|.+|.|..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 245666778888999998877311 111 12322 23333333221 1 2568999988643
No 484
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=84.62 E-value=21 Score=38.13 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC-C------CCcccc---cCCHHHHHHHHHhccCCc-eeEEecchhhhhhhhh
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-S------PKWVPQ---LADARDVMEAVRDLEGAR-LPVLTPNLKVILQRSI 212 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s------~~~~p~---~~D~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~ 212 (452)
..+.+..++=++.|.+.|++.|.+.... . +...|. ..+..++++.+..+.+.. +......
T Consensus 176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~--------- 246 (448)
T PRK14333 176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSH--------- 246 (448)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCC---------
Confidence 3577888888888888999988764210 0 000011 113455666665544421 1110100
Q ss_pred hhhhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEE
Q 012949 213 LFQQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGY 287 (452)
Q Consensus 213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~ 287 (452)
...+ ..+-++.+.+. +...+++.+ +.|+--++. .|+. ...+.+.++++.+++. |+.+.++
T Consensus 247 ------p~~~------~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~p~i~i~~d 311 (448)
T PRK14333 247 ------PRYF------TERLIKACAELPKVCEHFHIPFQSGDNEILKA-MARG--YTHEKYRRIIDKIREYMPDASISAD 311 (448)
T ss_pred ------hhhh------hHHHHHHHhcCCcccccccCCCccCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCcEEEee
Confidence 0000 12234444554 467777755 455543332 3332 2344555777888888 6666666
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 321 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~ 321 (452)
++ +|.|.++ .+.+.+.++.+.+.+.+.+.
T Consensus 312 ~I--vGfPgET---~edf~~tl~~l~~~~~~~~~ 340 (448)
T PRK14333 312 AI--VGFPGET---EAQFENTLKLVEEIGFDQLN 340 (448)
T ss_pred EE--EECCCCC---HHHHHHHHHHHHHcCCCEEe
Confidence 65 6777764 67777777878888876554
No 485
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=84.54 E-value=30 Score=34.11 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=112.7
Q ss_pred HHHHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949 152 ELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230 (452)
Q Consensus 152 ~i~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~ 230 (452)
+-+....+.|.++||+=.--+. ..-|+ --++..+.+..++.+.++++.+.. =+.|....-++|.
T Consensus 12 ~~l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ipv~~MIRPRgG----dFvY~~~E~~iM~------- 76 (241)
T COG3142 12 EGLLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIPVYVMIRPRGG----DFVYSDDELEIML------- 76 (241)
T ss_pred hhHHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCceEEEEecCCC----CcccChHHHHHHH-------
Confidence 4466778899999998532111 01121 123444444456666667755542 2456665555554
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
+|++.+.++|++.|.+-....|-.+. .++++++++.|..+++... .+| |.. .| -.+..+
T Consensus 77 ~DI~~~~~lG~~GVV~G~lt~dg~iD----------~~~le~Li~aA~gL~vTFH----rAF---D~~-~d---~~~ale 135 (241)
T COG3142 77 EDIRLARELGVQGVVLGALTADGNID----------MPRLEKLIEAAGGLGVTFH----RAF---DEC-PD---PLEALE 135 (241)
T ss_pred HHHHHHHHcCCCcEEEeeecCCCccC----------HHHHHHHHHHccCCceeee----hhh---hhc-CC---HHHHHH
Confidence 59999999999988887655553221 3566777777765443322 233 221 22 345667
Q ss_pred HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH-HHcCCCEEeecccC
Q 012949 311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTVDCSVAG 382 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA-l~aGa~~VD~Sv~G 382 (452)
.+.+.|+.+|-= +-|..++.+-.++++.+.+...+ ++.+=. --|.-..|...- ...|++.+|+|-..
T Consensus 136 ~li~~Gv~RILT--sGg~~sa~eg~~~l~~li~~a~g-ri~Im~--GaGV~~~N~~~l~~~tg~~e~H~s~~~ 203 (241)
T COG3142 136 QLIELGVERILT--SGGKASALEGLDLLKRLIEQAKG-RIIIMA--GAGVRAENIAELVLLTGVTEVHGSAGV 203 (241)
T ss_pred HHHHCCCcEEec--CCCcCchhhhHHHHHHHHHHhcC-CEEEEe--CCCCCHHHHHHHHHhcCchhhhhcccc
Confidence 889999988753 44556676666667776665543 222211 124444555444 57999999999876
No 486
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=84.53 E-value=62 Score=36.80 Aligned_cols=166 Identities=12% Similarity=0.130 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hc--cCCceeEEecchhhhhhhhhhhhhccch
Q 012949 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DL--EGARLPVLTPNLKVILQRSILFQQCHAS 220 (452)
Q Consensus 144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~ 220 (452)
+.+++.-++=+..|.++|.+.+-++. |...+++. +..|+ .+ .+..++. +... + |.
T Consensus 106 T~D~eatv~Qi~~l~~aGceiVRvtv-------~~~~~A~a-l~~I~~~L~~~g~~iPL-VADI----H----F~----- 163 (733)
T PLN02925 106 TKDVEATVDQVMRIADKGADIVRITV-------QGKKEADA-CFEIKNTLVQKGYNIPL-VADI----H----FA----- 163 (733)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHHh-HHHHHHHHhhcCCCCCE-EEec----C----CC-----
Confidence 46677788889999999999999975 33444433 33333 22 1222221 1111 1 11
Q ss_pred hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc------CCCHHHHHHHHH----HHHHHHHhCCCcEEEEEEe
Q 012949 221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYR----AVAHAAKVLSIPVRGYVSC 290 (452)
Q Consensus 221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~------~~s~e~~l~~~~----~~v~~Ak~~G~~V~~~l~~ 290 (452)
.+-...|++. ++.|||--. |=...+..| .-..++-+++++ .+|+.||++|..++.-+-
T Consensus 164 ---------~~~Al~a~~~-vdkiRINPG-N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN- 231 (733)
T PLN02925 164 ---------PSVALRVAEC-FDKIRVNPG-NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN- 231 (733)
T ss_pred ---------HHHHHHHHHh-cCCeEECCc-ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC-
Confidence 0122345556 888888421 100000000 112334454444 599999999999984332
Q ss_pred eecCCCC---CC--CCHHHH----HHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949 291 VVGCPVE---GA--IPPSKV----AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAV 344 (452)
Q Consensus 291 ~~g~p~~---~r--~d~e~l----~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~ 344 (452)
.|+-.. .+ -+|+-+ .+.++.+.+.|-+ .|+++.|.=...-...+.++..+.+.
T Consensus 232 -~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~ 295 (733)
T PLN02925 232 -HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVL 295 (733)
T ss_pred -CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhc
Confidence 222110 01 144433 3466777788876 56666664443444455555555443
No 487
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=84.37 E-value=40 Score=32.43 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCC--CCCCHHHH-
Q 012949 230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVE--GAIPPSKV- 305 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~--~r~d~e~l- 305 (452)
.+++..|.+.|+++|-+....+. =|.|+- +. .++.++ ...++|.+=|- |-. ..++.+++
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l~~------GGlTPS--~g----~i~~~~~~~~ipv~vMIR-----pr~gdF~Ys~~E~~ 72 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNLEV------GGLTPS--LG----LIRQAREAVDIPVHVMIR-----PRGGDFVYSDEEIE 72 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTGGG------T-B-----HH----HHHHHHHHTTSEEEEE-------SSSS-S---HHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCccC------CCcCcC--HH----HHHHHHhhcCCceEEEEC-----CCCCCccCCHHHHH
Confidence 35888999999999999864332 133432 22 223333 46777653222 322 24555554
Q ss_pred --HHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEEeecc
Q 012949 306 --AYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTVDCSV 380 (452)
Q Consensus 306 --~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~VD~Sv 380 (452)
.+-++.+.++|++.|.+. +.-|...-..+.++++... ..++.||-==|.=.-...++..+ +.|+++|=||=
T Consensus 73 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG 148 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG 148 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST
T ss_pred HHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC
Confidence 456678889999977763 4555555566666666543 45778876555444455555555 78999998772
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHcCCCC----CCCChhhHHHHHH
Q 012949 381 AGLGGCPYAKGASGNVATEDVVYMLSGLGVE----TNVDLRKLMLAGD 424 (452)
Q Consensus 381 ~GlGecP~a~graGNaalE~vv~~L~~~Gi~----t~iDl~~L~~la~ 424 (452)
.--.. -.|..-|.+++..... .++ -|++.+.+.++.+
T Consensus 149 g~~~a------~~g~~~L~~lv~~a~~-~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 149 GAPTA------LEGIENLKELVEQAKG-RIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp TSSST------TTCHHHHHHHHHHHTT-SSEEEEESS--TTTHHHHHH
T ss_pred CCCCH------HHHHHHHHHHHHHcCC-CcEEEecCCCCHHHHHHHHH
Confidence 22111 1233334444333221 121 2677777776554
No 488
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=84.35 E-value=14 Score=35.42 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=87.0
Q ss_pred HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230 (452)
Q Consensus 151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~ 230 (452)
.++++.-...|-..|-+.+ .++ ...+++..++.+-++.- + .|..+. -+..-+.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~------------~~d-I~aik~~v~lPIIGi~K--~-------~y~~~~-----V~ITPT~ 54 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG------------VED-IRAIKKAVDLPIIGIIK--R-------DYPDSD-----VYITPTL 54 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES------------HHH-HHHHHTTB-S-EEEE-B----------SBTTSS-------BS-SH
T ss_pred HHHHHHHHHCCceEEEcCC------------HHH-HHHHHHhcCCCEEEEEe--c-------cCCCCC-----eEECCCH
Confidence 3566666777777777643 233 45566544444333331 0 011111 0122345
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
++++...++|++.|.+=.... .+. +.+.+++++.|+.+..+.+.++ +. +-+.
T Consensus 55 ~ev~~l~~aGadIIAlDaT~R----------~Rp---~~l~~li~~i~~~~~l~MADis-----------t~----ee~~ 106 (192)
T PF04131_consen 55 KEVDALAEAGADIIALDATDR----------PRP---ETLEELIREIKEKYQLVMADIS-----------TL----EEAI 106 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-SSS----------S-S---S-HHHHHHHHHHCTSEEEEE-S-----------SH----HHHH
T ss_pred HHHHHHHHcCCCEEEEecCCC----------CCC---cCHHHHHHHHHHhCcEEeeecC-----------CH----HHHH
Confidence 799999999999999854322 223 4456778888998844433222 22 3455
Q ss_pred HHHHCCcCEEEE------cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949 311 ELHDMGCFEISL------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 376 (452)
Q Consensus 311 ~l~~~Gad~I~L------~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V 376 (452)
.+.++|+|.|.- .+|.+ -.| =.+|++.+++. ..++-.-.|-. -...+..|+++||..|
T Consensus 107 ~A~~~G~D~I~TTLsGYT~~t~~-~~p--D~~lv~~l~~~--~~pvIaEGri~---tpe~a~~al~~GA~aV 170 (192)
T PF04131_consen 107 NAAELGFDIIGTTLSGYTPYTKG-DGP--DFELVRELVQA--DVPVIAEGRIH---TPEQAAKALELGAHAV 170 (192)
T ss_dssp HHHHTT-SEEE-TTTTSSTTSTT-SSH--HHHHHHHHHHT--TSEEEEESS-----SHHHHHHHHHTT-SEE
T ss_pred HHHHcCCCEEEcccccCCCCCCC-CCC--CHHHHHHHHhC--CCcEeecCCCC---CHHHHHHHHhcCCeEE
Confidence 677899999864 45555 223 35677888775 34554433322 2477889999999865
No 489
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=84.31 E-value=9.1 Score=41.79 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 381 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~ 381 (452)
.+.+.+.++.+.+.|||.|-+.=-.+.-.|..+...|+.+++.++ .+|.+=..+ ..-+.+|+++||++|+ ++.
T Consensus 164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~-----~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPT-----LDELYEALKAGASGVI-MPD 236 (499)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCC-----HHHHHHHHHcCCCEEE-ECC
Confidence 378888999999999999999865555566779999999988764 478876554 3566789999999998 555
Q ss_pred C
Q 012949 382 G 382 (452)
Q Consensus 382 G 382 (452)
|
T Consensus 237 ~ 237 (499)
T TIGR00284 237 V 237 (499)
T ss_pred c
Confidence 5
No 490
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=84.28 E-value=5.9 Score=40.34 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHH----HHHHhCCCccEEEEeCCCcCcHHHHHHHH-HHcCCCEE
Q 012949 305 VAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLE----AVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTV 376 (452)
Q Consensus 305 l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~----~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA-l~aGa~~V 376 (452)
+.++++.+.++||+.|.+.|+.+ .++|....+++. .+.+.+......+|++-+.. ..+.. .+.|++.+
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~----~~l~~~~~~g~d~~ 257 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLT----SILEEMADCGFDGI 257 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCch----HHHHHHHhcCCCee
Confidence 34566778889999999999875 689988776653 33333332145678875542 22333 35788764
Q ss_pred eecccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949 377 DCSVAGLGGCPYAKGASGNVATEDVVYML 405 (452)
Q Consensus 377 D~Sv~GlGecP~a~graGNaalE~vv~~L 405 (452)
. +.. ..+++++...+
T Consensus 258 ~-----~d~---------~~dl~~~~~~~ 272 (339)
T PRK06252 258 S-----IDE---------KVDVKTAKENV 272 (339)
T ss_pred c-----cCC---------CCCHHHHHHHh
Confidence 3 334 24677776655
No 491
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=84.27 E-value=53 Score=33.68 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CH----HHHHHHHHhccCCceeEEe---cchhhhhhhhhhhh
Q 012949 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DA----RDVMEAVRDLEGARLPVLT---PNLKVILQRSILFQ 215 (452)
Q Consensus 145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~----e~v~~~i~~~~~~~l~~l~---~~~~~~i~r~~~~~ 215 (452)
.+.++-.++++.+.++|++.||+-....+. -|... +. .++++.+++.. ++++++ |+..
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p~~~---------- 175 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPT-DPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSPFFS---------- 175 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-CCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCCCcc----------
Confidence 356888999999999999999997642111 01111 11 23344444322 334433 2221
Q ss_pred hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--HHHh-----hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEE
Q 012949 216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--AFSK-----SNINCSIEDSLVRYRAVAHAAKV-LSIPVRGY 287 (452)
Q Consensus 216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--~~~~-----~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~ 287 (452)
+ ..+.++++.++|++-|.+...... +..+ ...+.|-........+.+..+++ ..+++.+
T Consensus 176 ----~--------~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig- 242 (325)
T cd04739 176 ----A--------LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAA- 242 (325)
T ss_pred ----C--------HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEE-
Confidence 0 113556788899999888654311 1000 00111111111222233444433 3555532
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949 288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 343 (452)
Q Consensus 288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~ 343 (452)
. .+-.+.+++.+.. .+||+.|.++=..=.--|.-+.++++.|.+
T Consensus 243 ----~----GGI~s~~Da~e~l----~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 286 (325)
T cd04739 243 ----S----GGVHDAEDVVKYL----LAGADVVMTTSALLRHGPDYIGTLLAGLEA 286 (325)
T ss_pred ----E----CCCCCHHHHHHHH----HcCCCeeEEehhhhhcCchHHHHHHHHHHH
Confidence 1 3445566655544 279999999843322237777777776655
No 492
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.20 E-value=9.1 Score=36.47 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc----------CCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeC--CCcC-cHHHH
Q 012949 301 PPSKVAYVAKELHDMGCFEISLG----------DTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLH--DTYG-QSLPN 364 (452)
Q Consensus 301 d~e~l~~~a~~l~~~Gad~I~L~----------DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~H--nd~G-lA~AN 364 (452)
+++.+.+.++.+.++|+|.|.|. |-.|. ..|..+.++++.+++..+ .++.+-.- .+.. -...-
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHH
Confidence 57888888998888899988874 33333 278888999999988876 34544332 2222 12222
Q ss_pred HHHHHHcCCCEEeec
Q 012949 365 ILISLQMGISTVDCS 379 (452)
Q Consensus 365 aLaAl~aGa~~VD~S 379 (452)
+-...++|++.|..+
T Consensus 144 ~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 144 AKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHhCCCEEEEC
Confidence 223335799988654
No 493
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=84.13 E-value=23 Score=36.02 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc----------C---
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI----------G--- 327 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~----------G--- 327 (452)
.+.++.++.+.++++.. .++|.+-+-.-| -++..+.+.++++.++|+..|.|-|.+ |
T Consensus 58 l~~~e~~~~~~~I~~~~---~lPv~aD~d~Gy-------G~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~ 127 (290)
T TIGR02321 58 LSMSTHLEMMRAIASTV---SIPLIADIDTGF-------GNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQE 127 (290)
T ss_pred CCHHHHHHHHHHHHhcc---CCCEEEECCCCC-------CCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCcc
Confidence 46777777776555443 677765444322 233368889999999999999999974 2
Q ss_pred CCcHHHHHHHHHHHHHhCCCccEEEEeCC-------CcCcHHHHHHHHHHcCCCEEe
Q 012949 328 VGTPGTVVPMLEAVMAVVPVEKLAVHLHD-------TYGQSLPNILISLQMGISTVD 377 (452)
Q Consensus 328 ~~~P~~v~~li~~l~~~~p~~~l~vH~Hn-------d~GlA~ANaLaAl~aGa~~VD 377 (452)
+..++...+.|++.++.-.+..+-+=.-- ..--|+.-+.+-.+||||.|=
T Consensus 128 l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~if 184 (290)
T TIGR02321 128 LVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAIL 184 (290)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 34667777778877764322223222221 224577788888899999653
No 494
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=84.10 E-value=42 Score=32.45 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEee
Q 012949 302 PSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDC 378 (452)
Q Consensus 302 ~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD~ 378 (452)
.....++++.+.+.|++.|.+ -+..|..... -.++++.+++..+ +|+-.-.--. .......+++. ||+.|=+
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~---~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAG---KPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCC---CHHHHHHHHHhCCCCEEEE
Confidence 345667888899999998888 4444433222 3466777776653 3555543211 12445555665 7764432
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949 379 SVAGLGGCPYAKGASGNVATEDVVYMLSG 407 (452)
Q Consensus 379 Sv~GlGecP~a~graGNaalE~vv~~L~~ 407 (452)
|-.= -.|..+++++...|++
T Consensus 223 ---g~al------~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 223 ---ASIF------HFGEYTIAELKEYLAE 242 (243)
T ss_pred ---eHHH------HcCCCCHHHHHHHHhh
Confidence 2111 2455678887776653
No 495
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=84.01 E-value=39 Score=33.27 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe-ee-cCCCCCC------CCH
Q 012949 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-VV-GCPVEGA------IPP 302 (452)
Q Consensus 231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~-~~-g~p~~~r------~d~ 302 (452)
+.++.+.++|.+.|-+...-.+... ..+..+ -..+.++.+.+++.|++|.. ++. .+ ..+.... ...
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~~~~~~r~~~~ 93 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRL-SRLDWS----REQRLALVNAIIETGVRIPS-MCLSAHRRFPLGSKDKAVRQQGL 93 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchh-hccCCC----HHHHHHHHHHHHHcCCCcee-eecCCCccCcCCCcCHHHHHHHH
Confidence 4788899999999999754321100 011222 23344566788899999752 221 00 0011111 112
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCC---cCCCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCc
Q 012949 303 SKVAYVAKELHDMGCFEISLGDT---IGVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTY 358 (452)
Q Consensus 303 e~l~~~a~~l~~~Gad~I~L~DT---~G~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~ 358 (452)
+.+.+.++.+.++|+..|.+.-. .+-..+.....+++.+++.. -++.|.+|.|+..
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~ 157 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTP 157 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc
Confidence 35677888889999999988632 12223444555555554432 1467999988653
No 496
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.98 E-value=24 Score=38.41 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNL 226 (452)
Q Consensus 148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~ 226 (452)
++..+.++.|.+.|++.|-+-.-..+. ....+.++.+|+ .++ +.+++-|.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~-----~~~~~~i~~ik~~~p~--~~v~agnv---------------------- 276 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGHQ-----EKMLEALRAVRALDPG--VPIVAGNV---------------------- 276 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCcc-----HHHHHHHHHHHHHCCC--CeEEeecc----------------------
Confidence 456789999999999997774321110 112333444443 233 23333232
Q ss_pred hccHHhHHHHHHcCCCEEEEEecCChH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949 227 WVYLQGFEAAIAAGAKEVAIFASASEA-FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 305 (452)
Q Consensus 227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~-~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l 305 (452)
++.+..+.++++|+|.|.+-+..--+ -.+...+.++. .+..+.++.+.|++.|++|.+ +.+-.++..+
T Consensus 277 -~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p-~~~av~~~~~~~~~~~~~via---------~ggi~~~~~~ 345 (479)
T PRK07807 277 -VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRP-QFSAVLECAAAARELGAHVWA---------DGGVRHPRDV 345 (479)
T ss_pred -CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchh-HHHHHHHHHHHHHhcCCcEEe---------cCCCCCHHHH
Confidence 23458888999999999976643100 01122344442 566777888888899988751 3444455444
Q ss_pred HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE----EEEeCCCcCcHHHHHHH
Q 012949 306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILI 367 (452)
Q Consensus 306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l----~vH~Hnd~GlA~ANaLa 367 (452)
. + +..+||+.+.+.- ++.. -.+.|...+ +-..-.-+||+..-++.
T Consensus 346 ~---~-al~~ga~~v~~g~------------~~ag-~~Espg~~~~~~~g~~~k~yrgmgs~~a~~ 394 (479)
T PRK07807 346 A---L-ALAAGASNVMIGS------------WFAG-TYESPGDLMRDRDGRPYKESFGMASARAVA 394 (479)
T ss_pred H---H-HHHcCCCeeeccH------------hhcc-CccCCCceEeccCCeEEEEeeccccHHHHh
Confidence 3 3 3347999988754 2222 233455222 22333468999766554
No 497
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=83.96 E-value=45 Score=32.67 Aligned_cols=217 Identities=10% Similarity=-0.045 Sum_probs=117.0
Q ss_pred CccEEEeCCccccCCCCCCC---CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe
Q 012949 125 RFVKIVEVGPRDGLQNEKNT---VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT 201 (452)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~---~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~ 201 (452)
++++|-...+-+|.-..=.. =+.++.+.-++.+...|+|.||.-...-.. .+.+++.+.++.+....++.+.
T Consensus 7 ~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~-----~~~~~~~~~~~~l~~~~~p~I~ 81 (229)
T PRK01261 7 DKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD-----HSIESEPEIISALNEMDIDYIF 81 (229)
T ss_pred CeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC-----CChHHHHHHHHHHhhcCCCEEE
Confidence 34666677776665322122 344555555677888899999997542211 1233333433333221223332
Q ss_pred cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949 202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS 281 (452)
Q Consensus 202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G 281 (452)
..+. ..+ .+-++.+.+.+++.|.|-...- ..+ .+++.|
T Consensus 82 T~R~------------~~~---------~~~l~~a~~~~~d~vDIEl~~~----------------~~~-----~~~~~~ 119 (229)
T PRK01261 82 TYRG------------VDA---------RKYYETAIDKMPPAVDLDINLI----------------GKL-----EFRPRN 119 (229)
T ss_pred EEcC------------CCH---------HHHHHHHHhhCCCEEEEEcccc----------------hhh-----hhhcCC
Confidence 2111 011 1355667777788888765320 111 234567
Q ss_pred CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC--CCccEEEEeCCCcC
Q 012949 282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYG 359 (452)
Q Consensus 282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~--p~~~l~vH~Hnd~G 359 (452)
.++. +|+ |+ .+.+.+.++.+.+.+.|+|.+-++=+. -++.++-.++..+.+.. ...++-.=+ +|
T Consensus 120 ~kvI--vS~------Ht-p~~eeL~~~l~~m~~~gaDI~KiAvmp--~~~~Dvl~~l~~~~~~~~~~~~p~i~is---MG 185 (229)
T PRK01261 120 TMLM--VSY------HT-NNSDNMPAILDIMNEKNPDYVKVACNY--NDNKKFVDDLQYILMKKDEKYKPIVFIP---MG 185 (229)
T ss_pred CeEE--EEe------CC-CCHHHHHHHHHHHHHhCCCEEEEEeCC--CChHHHHHHHHHHHHHHhcCCCCEEEEE---CC
Confidence 7765 442 33 256889999999999999998887532 23333333332222211 222222211 44
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410 (452)
Q Consensus 360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi 410 (452)
- .-.=+++...|-...=+++. + |-|| |+.+++++-..++.+++
T Consensus 186 ~-~iSRi~~~~fGS~lTyas~~---~-~sAP---GQi~v~~l~~~~~~~~~ 228 (229)
T PRK01261 186 R-EFLRIFSGYYVSDIVYARYD---N-ETAP---GQPKRDYYESAFIKYGY 228 (229)
T ss_pred c-HHHHHHHHHHCCceEEeeCC---C-CCCC---CCCCHHHHHHHHHHhcc
Confidence 4 34445566677665334443 4 4455 59999999999988765
No 498
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=83.83 E-value=25 Score=36.80 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHC-CcCEEEEcCCcCCCcHHHHHHHHH
Q 012949 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLE 339 (452)
Q Consensus 261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~li~ 339 (452)
.|.++.. ++++.+++.|++.. .++ |.|-.-+ + .+.++++.+.+. |...+.+ .|.|++.+..+.+
T Consensus 90 ls~eei~----~~i~~~~~~Gv~~I-~~t---GGEPllr--~-dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~~--- 154 (373)
T PLN02951 90 LSQDEIV----RLAGLFVAAGVDKI-RLT---GGEPTLR--K-DIEDICLQLSSLKGLKTLAM-TTNGITLSRKLPR--- 154 (373)
T ss_pred CCHHHHH----HHHHHHHHCCCCEE-EEE---CCCCcch--h-hHHHHHHHHHhcCCCceEEE-eeCcchHHHHHHH---
Confidence 4555554 44566667887531 122 3332212 2 366677777765 7766776 6999988765443
Q ss_pred HHHHh-CCCccEEEEeCC-----------CcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949 340 AVMAV-VPVEKLAVHLHD-----------TYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYML 405 (452)
Q Consensus 340 ~l~~~-~p~~~l~vH~Hn-----------d~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNaalE~vv~~L 405 (452)
+++. +..+.|.++..+ ++...+.+.-+|.++|.. .|++++.- |. -.-.+++++..+
T Consensus 155 -L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~--------N~~Ei~~li~~a 224 (373)
T PLN02951 155 -LKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF--------NDDEICDFVELT 224 (373)
T ss_pred -HHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC--------CHHHHHHHHHHH
Confidence 3332 223445555422 223445666667788875 34544431 22 113466777777
Q ss_pred HcCCC
Q 012949 406 SGLGV 410 (452)
Q Consensus 406 ~~~Gi 410 (452)
+..|+
T Consensus 225 ~~~gi 229 (373)
T PLN02951 225 RDKPI 229 (373)
T ss_pred HhCCC
Confidence 76664
No 499
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=83.77 E-value=26 Score=31.27 Aligned_cols=69 Identities=32% Similarity=0.364 Sum_probs=41.6
Q ss_pred hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAK 310 (452)
Q Consensus 232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~ 310 (452)
.+++|++.+++.|.+.... . ...+.+.++++..++.|.. +. |. .| +..+.+. .+
T Consensus 45 ~v~aa~e~~adii~iSsl~-~------------~~~~~~~~~~~~L~~~g~~~i~--vi--vG----G~~~~~~----~~ 99 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLA-G------------GHLTLVPALRKELDKLGRPDIL--VV--VG----GVIPPQD----FD 99 (132)
T ss_pred HHHHHHHcCCCEEEEcCch-h------------hhHHHHHHHHHHHHhcCCCCCE--EE--Ee----CCCChHh----HH
Confidence 4566777888877775332 1 3456667788888888763 22 11 22 2222222 34
Q ss_pred HHHHCCcCEEEEcCC
Q 012949 311 ELHDMGCFEISLGDT 325 (452)
Q Consensus 311 ~l~~~Gad~I~L~DT 325 (452)
.+.++|++.+.-+-|
T Consensus 100 ~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 100 ELKEMGVAEIFGPGT 114 (132)
T ss_pred HHHHCCCCEEECCCC
Confidence 578899998887765
No 500
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=83.76 E-value=52 Score=34.56 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=56.4
Q ss_pred HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949 230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 306 (452)
Q Consensus 230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~--s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~ 306 (452)
.+.++...++|+++|.+-+ +.+|...+ .+|+ +.++ +.++++.+++.+..|.+.++ +|.|-. +.+.+.
T Consensus 122 ~e~L~~l~~~GvnrisiGvQS~~~~~L~-~l~R~~~~~~----~~~~i~~~~~~~~~v~~dlI--~GlPgq---t~~~~~ 191 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGIQSFNDAHLK-ALGRIHDGAE----ARAAIEIAAKHFDNFNLDLM--YALPGQ---TLDEAL 191 (394)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHH-HhCCCCCHHH----HHHHHHHHHHhCCceEEEEE--cCCCCC---CHHHHH
Confidence 3588889999999999987 44444333 3333 4444 44556777776666766665 666654 467777
Q ss_pred HHHHHHHHCCcCEEEE
Q 012949 307 YVAKELHDMGCFEISL 322 (452)
Q Consensus 307 ~~a~~l~~~Gad~I~L 322 (452)
+-++.+.+++++.|.+
T Consensus 192 ~~l~~~~~l~p~~is~ 207 (394)
T PRK08898 192 ADVETALAFGPPHLSL 207 (394)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 7788889999987764
Done!