BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012952
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TYI NIIAMGFPA + N++++V++F ++ HK YK+YNLC+ER YD A F +
Sbjct: 19 LTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCR 78
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
VA +PF+DHN P ++LI FC WL ED +V +HCKAG RTG+MIC+ LL
Sbjct: 79 VAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGK 138
Query: 119 FPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERIL 156
F A+EA+D+Y + R D K + +PSQ RYV Y+ +L
Sbjct: 139 FLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLL 176
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 2/175 (1%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 27 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 86
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +H K G RTG ++ S LL
Sbjct: 87 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGK 146
Query: 119 FPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 147 FDTAKEALEYFGSRRTDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 201
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 22 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 81
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +HCKAG RTG ++ S LL
Sbjct: 82 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLVSSWLLEDGK 141
Query: 119 FPTAEEAIDYYNQKRCVDG-----KALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 142 FDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 201
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 34 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 93
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +HCK G RTG ++ S LL
Sbjct: 94 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGK 153
Query: 119 FPTAEEAIDYYNQKRCVDG-----KALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 154 FDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 213
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 12 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 71
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +HCK G RTG ++ S LL
Sbjct: 72 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGK 131
Query: 119 FPTAEEAIDYYNQKRCVDG-----KALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 132 FDTAKEALEYFGSRRTDFEVGDVFQGVFTASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 191
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 22 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 81
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +HCK G RTG ++ S LL
Sbjct: 82 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGK 141
Query: 119 FPTAEEAIDYYNQKRCVDGKALVL-----PSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R V SQIRYV YFE+I G++ P ++ + G
Sbjct: 142 FDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 201
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 27 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 86
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +H K G RTG ++ S LL
Sbjct: 87 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGK 146
Query: 119 FPTAEEAIDYYNQKRCVDG-----KALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 147 FDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 206
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 1 MTYITENIIAMGFPAGDISS--GNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
+TY+T+++IAM FP+ S N + EV +FF+T H K+++YNLCSER YD F
Sbjct: 12 LTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 71
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V DDHN P + + F A W+ D +V+ +H K G RTG ++ S LL
Sbjct: 72 VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGK 131
Query: 119 FPTAEEAIDYYNQKRCVDG-----KALVLPSQIRYVKYFERILTYSNGEIQPARRCMLRG 173
F TA+EA++Y+ +R + + SQIRYV YFE+I G++ P ++ + G
Sbjct: 132 FDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 191
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 1 MTYITENIIAMGFP--AGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK 58
TY+T II M FP + DI N ++++ F ++ H Y VYNL S + Y A F +
Sbjct: 24 FTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNL-SPKSYRTAKFHSR 82
Query: 59 VACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118
V+ + P + + + CR+ Y+WL ++ NV VVHC G A + +++ ++ +F
Sbjct: 83 VSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNL 142
Query: 119 FPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERIL 156
+ T A+ KR G + PS RY+ Y +L
Sbjct: 143 YSTPGPAVRLLYAKRPGIGLS---PSHRRYLGYMCDLL 177
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 110
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VHC AG+ R +++ L ++ E+A+ + QKR
Sbjct: 111 KFREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGMKYEDAVQFIRQKR 157
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 110
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VHC AG+ R +++ L ++ E+A+ + QKR
Sbjct: 111 KFREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGMKYEDAVQFIRQKR 157
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
Length = 159
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 31 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 89
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VHC AG+ R +++ L ++ E+A+ + QKR
Sbjct: 90 KFREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR 136
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 26 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 84
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VHC AG+ R +++ L ++ E+A+ + QKR
Sbjct: 85 KFREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR 131
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 37 GKYKVYNLCSERLYDAALFQG---KVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNV 93
G V +C E YD + V +PFDD PP +++ + + E +
Sbjct: 44 GATTVVRVC-EVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSC 102
Query: 94 VVVHCKAGMARTGLMICSLLL--FLKFFPTAEEAIDYYNQKR 133
V VHC AG+ R +++ L+ +K+ E+AI + QKR
Sbjct: 103 VAVHCVAGLGRAPVLVALALIESGMKY----EDAIQFIRQKR 140
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 17 DISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQ 73
D S +++ IK E H+G + +C YDA L + + V +PFDD PP +
Sbjct: 29 DAPSPSNLPTYIK--ELQHRGVRHLVRVCGPT-YDATLVKSRGIDVHSWPFDD-GAPPTR 84
Query: 74 LIASFCRSAYSWLK----------EDIL---NVVVVHCKAGMARTGLMICSLLLFLKFFP 120
+ SWLK ED + VHC AG+ R +++ +L L
Sbjct: 85 AVLD------SWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILV-ALALVEYGNV 137
Query: 121 TAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFER 154
+A +AI +KR K + +Q ++ ++R
Sbjct: 138 SALDAIALIREKR----KGAINQTQXHWITKYKR 167
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)
Query: 11 MGFPAGDISSGNHMEEVIK----------FFETHHK-GKYKVYNLCSERLYDAALFQG-- 57
M PA S HM +I F E K G V +C E YD +
Sbjct: 4 MNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVC-EVTYDKTPLEKDG 62
Query: 58 -KVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLL-- 114
V +PFDD PP +++ + + E + V VHC AG+ R +++ L+
Sbjct: 63 ITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIES 122
Query: 115 FLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYF--ERILTYSNGEIQPARRCML 171
+K+ E+AI + QKR + + Q+ Y++ + ++ L + + R C++
Sbjct: 123 GMKY----EDAIQFIRQKR----RGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM 173
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 69 CPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDY 128
CP + +F R + + + ++ VHC G RTG +IC+ L+ K + E A+
Sbjct: 119 CPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLV-EKMDWSIEAAVAT 177
Query: 129 YNQKR 133
+ Q R
Sbjct: 178 FAQAR 182
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 70 PPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLF-LKFFPTAEEAIDY 128
PP ++ F + + ++ +V VHC G+ RTG M+C L+ L P +EAID
Sbjct: 92 PPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAP--QEAIDR 149
Query: 129 YNQKR 133
+ + R
Sbjct: 150 FEKAR 154
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 18 ISSGNHM---EEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFP-----FDDHNC 69
+ SG H E I++F+ H+ N +R+YDA F A F F D +
Sbjct: 198 LESGYHQHSPETYIQYFKNHNVTTIIRLN---KRMYDAKRFTD--AGFDHHDLFFADGST 252
Query: 70 PPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDY 128
P ++ F + E+ + VHCKAG+ RTG +I ++ + TA E I +
Sbjct: 253 PTDAIVKEFLD-----ICENAEGAIAVHCKAGLGRTGTLIACYIM-KHYRMTAAETIAW 305
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 110
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VH AG+ R +++ L ++ E+A+ + QKR
Sbjct: 111 KFREEPGCCIAVHSVAGLGRAPVLVA--LALIEGGMKYEDAVQFIRQKR 157
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 94 VVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFE 153
V VHCKAG +R+ M+ + L+ + + + EEAI+ + R + PSQ+ +K F
Sbjct: 92 VYVHCKAGRSRSATMVAAYLIQVHNW-SPEEAIEAIAKIR---SHISIRPSQLEVLKEFH 147
Query: 154 RILT 157
+ +T
Sbjct: 148 KEIT 151
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 69 CPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDY 128
CP + +F R + + ++ VHC G RTG +IC+ L+ K + E A+
Sbjct: 97 CPTTENTETFIRLCERFNERSPPELIGVHCTHGFNRTGFLICAFLV-EKMDWSIEAAVAT 155
Query: 129 YNQKR 133
+ Q R
Sbjct: 156 FAQAR 160
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 29 KFFETHHK-GKYKVYNLCSERLYDAALFQGK---VACFPFDDHNCPPIQLIASFCRSAYS 84
KF E K G + +C E YD L + + V +PFDD P Q++ +
Sbjct: 32 KFIEELKKYGVTTIVRVC-EATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKI 90
Query: 85 WLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133
+E+ + VH AG+ R +++ L ++ E+A+ + QKR
Sbjct: 91 KFREEPGCCIAVHSVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR 137
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 18/81 (22%)
Query: 94 VVVHCKAGMARTGLMI------CSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVL--PSQ 145
VVVHC AG+ RTG++I C + +P +D R D +A+++ PSQ
Sbjct: 240 VVVHCSAGIGRTGVLITMETAMCLIECNQPVYP-----LDIVRTMR--DQRAMMIQTPSQ 292
Query: 146 IRYVKYFERIL-TYSNGEIQP 165
R+V E IL Y G ++P
Sbjct: 293 YRFV--CEAILKVYEEGFVKP 311
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 64 FDDHNCPP--------IQLIASFCRSAYSWLKEDILNV---VVVHCKAGMARTGLMICSL 112
+ DH CP ++ I S R S L E N +VVHC AG+ RTG++I S
Sbjct: 215 WPDHGCPEDVQGFLSYLEEIQSVRRHTNSML-EGTKNRHPPIVVHCSAGVGRTGVLILSE 273
Query: 113 LLF 115
L+
Sbjct: 274 LMI 276
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 94 VVVHCKAGMARTG--LMICSLLLFLKFFPTAEEAIDYYNQKRCVDG-KALVLPSQIRYVK 150
+VVHC AG+ RTG ++I ++L +K E+ +D Y C+ + ++ ++ +YV
Sbjct: 212 MVVHCSAGVGRTGCFIVIDAMLERMKH----EKTVDIYGHVTCMRSQRNYMVQTEDQYVF 267
Query: 151 YFERIL---TYSNGEIQPARRCMLRGFRLLQCP 180
E +L T + E+ PAR +L Q P
Sbjct: 268 IHEALLEAATCGHTEV-PARNLYAHIQKLGQVP 299
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 22/92 (23%)
Query: 55 FQG--KVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNV---------VVVHCKAGMA 103
F+G + C P +D++ I SW E I + V+VH +AG++
Sbjct: 44 FEGHYQYKCIPVEDNHKADIS----------SWFMEAIEYIDAVKDCRGRVLVHSQAGIS 93
Query: 104 RTGLMICSLLLFLKFFPTAEEAIDYYNQKRCV 135
R+ IC L +K EEA ++ Q+R +
Sbjct: 94 RSA-TICLAYLMMKKRVRLEEAFEFVKQRRSI 124
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 42 YNLCSERLYDAALFQGKVACFPFDDHNCP-PIQLIASFCRSAYSWL-KEDILNVVVVHCK 99
+ +C E DA + DH P Q + F R+ ++ + VVHC
Sbjct: 170 FKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCS 229
Query: 100 AGMARTGLMI 109
AG+ RTG I
Sbjct: 230 AGVGRTGTFI 239
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 18 ISSGNHM---EEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFP-----FDDHNC 69
+ SG H E I++F+ H+ N +R+YDA F A F F D +
Sbjct: 198 LESGYHQHSPETYIQYFKNHNVTTIIRLN---KRMYDAKRFTD--AGFDHHDLFFADGST 252
Query: 70 PPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDY 128
P ++ F + E+ + VH KAG+ RTG +I ++ + TA E I +
Sbjct: 253 PTDAIVKEFLD-----ICENAEGAIAVHSKAGLGRTGTLIACYIM-KHYRMTAAETIAW 305
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 42 YNLCSERLYDAALFQGKVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDI-LNVVVVHCK 99
+ +C E DA + DH P Q + F R+ ++ VVHC
Sbjct: 186 FKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCS 245
Query: 100 AGMARTGLMI 109
AG+ RTG I
Sbjct: 246 AGVGRTGTFI 255
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 42 YNLCSERLYDAALFQGKVACFPFDDHNCP-PIQLIASFCRSAYSWL-KEDILNVVVVHCK 99
+ +C E DA + DH P Q + F R+ ++ + VVHC
Sbjct: 167 FKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCS 226
Query: 100 AGMARTGLMI 109
AG+ RTG I
Sbjct: 227 AGVGRTGTFI 236
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 94 VVVHCKAGMARTG--LMICSLLLFLKFFPTAEEAIDYYN-QKRCVDGKALVLPSQIRYVK 150
+VVHC AG+ RTG ++I +++ + AE+ +D + R + + ++ + ++Y
Sbjct: 226 IVVHCSAGVGRTGTFIVIDAMMAMMH----AEQKVDVFEFVSRIRNQRPQMVQTDMQYTF 281
Query: 151 YFERILTY 158
++ +L Y
Sbjct: 282 IYQALLEY 289
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 94 VVVHCKAGMARTGLMI------CSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIR 147
V+VHC AG+ RTG+++ C L +P +D + R D +A+++ + +
Sbjct: 212 VLVHCSAGIGRTGVLVTMETAMCLTERNLPIYP-----LDIVRKMR--DQRAMMVQTSSQ 264
Query: 148 YVKYFERIL-TYSNGEIQ 164
Y E IL Y G +Q
Sbjct: 265 YKFVCEAILRVYEEGLVQ 282
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 94 VVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYV 149
+VVHC AG+ RTG I + + P E+ +D Y G ++ SQ Y+
Sbjct: 224 IVVHCSAGVGRTGCFIVIDAMLERIKP--EKTVDVY-------GHVTLMRSQRNYM 270
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 94 VVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFE 153
V VH KAG +R+ M+ + L+ + + + EEAI+ + R + PSQ+ +K F
Sbjct: 93 VYVHSKAGRSRSATMVAAYLIQVHNW-SPEEAIEAIAKIR---SHISIRPSQLEVLKEFH 148
Query: 154 RILT 157
+ +T
Sbjct: 149 KEIT 152
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 113 LLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVK-----YFERILTYSNGEIQ 164
L F+K + I ++ Q R VDGK + +P+++ +++ Y+ T +G +Q
Sbjct: 327 LSFVKVDSHFRQGIPFFGQVRLVDGKGVPIPNKVIFIRGNEANYYSNATTDEHGLVQ 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,517,347
Number of Sequences: 62578
Number of extensions: 627491
Number of successful extensions: 1331
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 47
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)