Query 012952
Match_columns 452
No_of_seqs 259 out of 1703
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 9.7E-57 2.1E-61 467.1 28.9 328 1-357 15-355 (434)
2 PTZ00242 protein tyrosine phos 99.9 1.3E-21 2.9E-26 181.0 16.1 144 1-157 11-159 (166)
3 PF10409 PTEN_C2: C2 domain of 99.9 1.2E-21 2.7E-26 174.1 10.7 117 164-292 1-134 (134)
4 KOG1720 Protein tyrosine phosp 99.8 3.4E-19 7.4E-24 167.7 13.8 145 1-155 53-207 (225)
5 PTZ00393 protein tyrosine phos 99.8 1.4E-18 3E-23 168.1 14.4 138 4-157 90-230 (241)
6 smart00195 DSPc Dual specifici 99.6 1.8E-14 3.8E-19 127.8 13.4 135 2-154 2-137 (138)
7 cd00127 DSPc Dual specificity 99.5 2.1E-13 4.5E-18 120.3 13.1 135 1-152 2-138 (139)
8 COG2453 CDC14 Predicted protei 99.5 1.6E-13 3.6E-18 128.5 11.9 97 56-157 72-168 (180)
9 PF00782 DSPc: Dual specificit 99.5 3E-13 6.6E-18 118.9 11.0 119 28-154 11-132 (133)
10 smart00404 PTPc_motif Protein 99.4 1.8E-13 3.9E-18 113.9 7.1 91 58-151 4-101 (105)
11 smart00012 PTPc_DSPc Protein t 99.4 1.8E-13 3.9E-18 113.9 7.1 91 58-151 4-101 (105)
12 KOG2836 Protein tyrosine phosp 99.4 3.1E-12 6.7E-17 113.3 13.3 110 37-153 41-153 (173)
13 PRK12361 hypothetical protein; 99.4 6.8E-12 1.5E-16 136.0 15.2 137 2-154 96-235 (547)
14 PF05706 CDKN3: Cyclin-depende 99.4 3.3E-12 7.1E-17 117.7 10.0 118 5-126 40-168 (168)
15 KOG1719 Dual specificity phosp 99.3 2.8E-11 6E-16 109.7 9.8 92 58-155 77-169 (183)
16 PRK15375 pathogenicity island 99.2 1E-10 2.2E-15 123.6 12.2 96 59-156 426-529 (535)
17 cd00047 PTPc Protein tyrosine 99.2 7.1E-11 1.5E-15 113.7 10.1 89 60-151 134-227 (231)
18 PHA02740 protein tyrosine phos 99.2 8.5E-11 1.8E-15 118.6 9.5 93 59-151 181-282 (298)
19 smart00194 PTPc Protein tyrosi 99.2 1.3E-10 2.7E-15 114.0 10.1 90 58-151 160-254 (258)
20 KOG0792 Protein tyrosine phosp 99.1 8.1E-11 1.8E-15 131.3 7.8 96 59-157 1031-1128(1144)
21 PHA02742 protein tyrosine phos 99.1 2.1E-10 4.4E-15 116.0 8.8 90 59-151 186-290 (303)
22 KOG0790 Protein tyrosine phosp 99.1 3.9E-11 8.5E-16 123.5 3.4 92 58-152 416-516 (600)
23 PHA02747 protein tyrosine phos 99.0 5.9E-10 1.3E-14 113.1 8.9 88 59-149 187-288 (312)
24 PHA02746 protein tyrosine phos 99.0 5.4E-10 1.2E-14 113.9 8.0 90 59-151 205-308 (323)
25 PHA02738 hypothetical protein; 99.0 1.2E-09 2.5E-14 111.4 8.9 90 59-151 182-288 (320)
26 PF00102 Y_phosphatase: Protei 99.0 2.2E-09 4.7E-14 102.1 8.8 90 58-151 137-231 (235)
27 KOG0791 Protein tyrosine phosp 98.9 1.9E-09 4.1E-14 109.5 8.3 99 52-151 248-348 (374)
28 COG5599 PTP2 Protein tyrosine 98.8 3.2E-09 7E-14 103.8 4.9 96 58-156 187-293 (302)
29 KOG1718 Dual specificity phosp 98.7 3.2E-07 6.9E-12 84.7 13.4 119 1-134 17-136 (198)
30 KOG1716 Dual specificity phosp 98.6 9.7E-07 2.1E-11 88.6 14.1 138 3-157 77-217 (285)
31 KOG0789 Protein tyrosine phosp 98.5 3.8E-07 8.3E-12 94.8 8.1 89 57-150 265-360 (415)
32 KOG4228 Protein tyrosine phosp 98.4 7.6E-08 1.6E-12 108.9 2.3 123 30-157 668-795 (1087)
33 TIGR01244 conserved hypothetic 98.2 2.5E-05 5.5E-10 69.9 13.2 112 2-133 3-125 (135)
34 KOG1717 Dual specificity phosp 98.2 6.2E-06 1.4E-10 81.1 9.6 114 37-157 197-313 (343)
35 PF03162 Y_phosphatase2: Tyros 98.2 9.2E-06 2E-10 75.4 10.3 133 3-156 9-150 (164)
36 KOG2386 mRNA capping enzyme, g 98.2 4.6E-06 1E-10 86.6 8.9 112 22-134 48-166 (393)
37 KOG0793 Protein tyrosine phosp 98.0 9.6E-06 2.1E-10 88.1 6.7 89 58-150 894-988 (1004)
38 KOG4228 Protein tyrosine phosp 97.9 8.9E-06 1.9E-10 92.5 5.0 113 38-158 967-1084(1087)
39 PF14566 PTPlike_phytase: Inos 97.9 1.9E-05 4E-10 72.1 5.9 57 56-115 92-148 (149)
40 PLN02727 NAD kinase 97.8 0.00019 4.1E-09 81.3 12.1 88 24-118 271-368 (986)
41 PF13350 Y_phosphatase3: Tyros 97.7 9.2E-05 2E-09 68.0 6.7 43 82-127 116-158 (164)
42 COG2365 Protein tyrosine/serin 96.9 0.002 4.4E-08 63.7 6.9 43 90-133 135-177 (249)
43 KOG1572 Predicted protein tyro 96.8 0.0062 1.4E-07 59.5 8.7 100 26-130 76-185 (249)
44 PF04273 DUF442: Putative phos 96.6 0.021 4.5E-07 49.7 10.2 93 1-111 2-105 (110)
45 PF14671 DSPn: Dual specificit 96.3 0.0094 2E-07 54.2 6.3 104 2-132 2-110 (141)
46 COG5350 Predicted protein tyro 94.2 0.1 2.2E-06 48.1 5.6 85 62-157 65-153 (172)
47 cd01518 RHOD_YceA Member of th 92.2 0.82 1.8E-05 38.0 7.9 80 24-117 6-85 (101)
48 PRK01415 hypothetical protein; 92.1 0.81 1.8E-05 45.4 8.9 101 4-118 92-196 (247)
49 PRK00142 putative rhodanese-re 88.5 2.4 5.3E-05 43.4 9.1 101 4-118 91-196 (314)
50 cd01448 TST_Repeat_1 Thiosulfa 88.3 3 6.5E-05 35.7 8.3 86 24-118 4-105 (122)
51 PRK05320 rhodanese superfamily 87.2 3.1 6.8E-05 41.4 8.7 104 4-118 90-200 (257)
52 PF06602 Myotub-related: Myotu 82.1 3.2 6.9E-05 43.3 6.4 25 90-114 230-254 (353)
53 PF04179 Init_tRNA_PT: Initiat 81.5 5.9 0.00013 42.7 8.3 76 39-115 320-400 (451)
54 KOG4471 Phosphatidylinositol 3 81.3 3 6.5E-05 46.0 6.0 23 91-113 374-396 (717)
55 PF00581 Rhodanese: Rhodanese- 80.6 5.4 0.00012 32.8 6.3 81 24-111 2-86 (113)
56 COG1054 Predicted sulfurtransf 76.5 8.9 0.00019 39.1 7.3 101 4-118 92-197 (308)
57 cd01533 4RHOD_Repeat_2 Member 76.4 7.6 0.00017 32.6 6.0 78 23-117 13-90 (109)
58 COG3453 Uncharacterized protei 76.1 13 0.00029 33.1 7.4 94 2-113 4-108 (130)
59 cd01523 RHOD_Lact_B Member of 75.7 12 0.00027 30.7 7.0 82 24-117 3-85 (100)
60 cd01522 RHOD_1 Member of the R 74.5 14 0.0003 31.8 7.2 85 24-117 3-88 (117)
61 PLN02160 thiosulfate sulfurtra 74.1 6.7 0.00015 35.0 5.3 85 23-117 18-105 (136)
62 cd01519 RHOD_HSP67B2 Member of 71.5 13 0.00027 30.7 6.1 86 23-117 2-90 (106)
63 TIGR03865 PQQ_CXXCW PQQ-depend 67.7 40 0.00087 31.0 9.1 19 89-107 114-132 (162)
64 cd01525 RHOD_Kc Member of the 66.3 14 0.00031 30.4 5.3 85 24-117 3-89 (105)
65 cd01529 4RHOD_Repeats Member o 62.3 22 0.00049 28.9 5.7 78 28-117 3-80 (96)
66 cd01530 Cdc25 Cdc25 phosphatas 60.7 46 0.001 28.8 7.7 83 24-115 6-91 (121)
67 cd01443 Cdc25_Acr2p Cdc25 enzy 56.9 37 0.0008 28.7 6.3 75 24-108 6-83 (113)
68 cd01531 Acr2p Eukaryotic arsen 55.6 1.2E+02 0.0025 25.5 9.2 74 23-107 5-78 (113)
69 cd01520 RHOD_YbbB Member of th 54.6 64 0.0014 28.0 7.6 38 24-66 3-40 (128)
70 cd01528 RHOD_2 Member of the R 51.4 69 0.0015 26.2 7.0 79 24-117 4-82 (101)
71 KOG3824 Huntingtin interacting 51.4 66 0.0014 33.5 7.9 74 66-157 328-416 (472)
72 smart00450 RHOD Rhodanese Homo 50.1 42 0.0009 26.3 5.3 76 37-117 3-80 (100)
73 KOG1089 Myotubularin-related p 48.6 38 0.00082 37.6 6.2 21 92-112 345-365 (573)
74 cd01444 GlpE_ST GlpE sulfurtra 47.8 73 0.0016 25.5 6.5 26 90-117 55-80 (96)
75 PRK07411 hypothetical protein; 41.9 60 0.0013 34.2 6.3 82 23-117 285-366 (390)
76 cd01526 RHOD_ThiF Member of th 41.6 1.3E+02 0.0028 25.7 7.4 82 23-118 11-97 (122)
77 cd01449 TST_Repeat_2 Thiosulfa 41.5 62 0.0013 27.1 5.3 17 90-107 77-93 (118)
78 PRK00162 glpE thiosulfate sulf 38.1 1.3E+02 0.0028 25.0 6.7 75 23-117 8-82 (108)
79 PF15274 MLIP: Muscular LMNA-i 37.3 53 0.0011 32.5 4.6 21 344-365 17-37 (256)
80 PRK11493 sseA 3-mercaptopyruva 36.6 99 0.0022 30.7 6.7 21 23-46 8-28 (281)
81 cd00158 RHOD Rhodanese Homolog 36.4 53 0.0012 25.4 3.9 27 89-117 48-74 (89)
82 PLN02723 3-mercaptopyruvate su 36.1 1.4E+02 0.003 30.5 7.7 86 23-117 193-293 (320)
83 cd01534 4RHOD_Repeat_3 Member 35.1 2.4E+02 0.0051 22.7 7.7 77 24-116 3-79 (95)
84 PRK05600 thiamine biosynthesis 32.7 99 0.0021 32.5 6.1 80 24-117 275-356 (370)
85 PRK09629 bifunctional thiosulf 31.2 1.9E+02 0.0041 32.6 8.3 77 24-108 151-239 (610)
86 COG0607 PspE Rhodanese-related 29.2 64 0.0014 26.4 3.3 28 89-118 59-86 (110)
87 PRK10287 thiosulfate:cyanide s 28.5 57 0.0012 27.8 3.0 27 89-117 58-84 (104)
88 cd01524 RHOD_Pyr_redox Member 28.4 2.6E+02 0.0055 22.3 6.8 26 89-116 49-74 (90)
89 cd01445 TST_Repeats Thiosulfat 28.4 4E+02 0.0087 23.6 8.6 22 24-45 3-25 (138)
90 cd01532 4RHOD_Repeat_1 Member 27.2 91 0.002 25.2 3.9 28 90-117 49-76 (92)
91 cd01535 4RHOD_Repeat_4 Member 26.5 2.1E+02 0.0045 25.7 6.4 26 90-117 48-73 (145)
92 PRK09629 bifunctional thiosulf 23.6 2.4E+02 0.0053 31.7 7.5 76 23-106 12-96 (610)
93 PHA03249 DNA packaging tegumen 23.5 2.3E+02 0.0049 31.9 6.9 17 434-450 171-189 (653)
94 TIGR02981 phageshock_pspE phag 23.2 1.3E+02 0.0028 25.4 4.1 27 89-117 56-82 (101)
95 cd01521 RHOD_PspE2 Member of t 21.2 1.3E+02 0.0029 25.1 3.9 80 23-117 11-90 (110)
96 KOG0952 DNA/RNA helicase MER3/ 21.0 4E+02 0.0087 32.2 8.6 99 7-116 277-376 (1230)
97 cd05567 PTS_IIB_mannitol PTS_I 20.8 1.1E+02 0.0024 24.8 3.2 18 93-111 2-19 (87)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.7e-57 Score=467.06 Aligned_cols=328 Identities=38% Similarity=0.627 Sum_probs=274.3
Q ss_pred CceecCceEEEcCCCCCCCCC--CCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHH
Q 012952 1 MTYITENIIAMGFPAGDISSG--NHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASF 78 (452)
Q Consensus 1 LtYIT~rIIam~~P~~~~e~~--N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f 78 (452)
|||||+||||||||++++++. |+++||+.||+++|++||+|||||+||.||..+|+++|..|||+||++|+|+.|..|
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~ 94 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPF 94 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHH
Confidence 799999999999999999876 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCC--ceeecccHHHHHHHHHHHH
Q 012952 79 CRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDG--KALVLPSQIRYVKYFERIL 156 (452)
Q Consensus 79 ~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~--kgv~~PSQ~RYl~Yf~~lL 156 (452)
|+.|++||+++++|||||||++|+||||+||||||++++++.++++|+++|.++|+..+ .++++|||+|||+||+.+|
T Consensus 95 c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 95 CKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred HHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999996665 5799999999999999963
Q ss_pred hhhcCCCCCCc---ceeEeeEEeecCCC------cccCeEEEEeCCceEEeccCCCccccCCCcceeeecCCCCeEEEEc
Q 012952 157 TYSNGEIQPAR---RCMLRGFRLLQCPY------WIRPSITIFNHSGILFSTRKHPKTKDLMPEDFWIKAPKKGIVVFAL 227 (452)
Q Consensus 157 ~~~~~~~~p~~---~l~L~~i~l~~~P~------~~rP~i~I~~~~~~l~st~~~~~~k~l~p~~~~~~~~~~g~~~f~l 227 (452)
- ++..++.. ++.|+.+.++.+|. .|+|++.|+.+.+.+++......+.
T Consensus 175 ~--~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k~~~~~~~s~~~~~--------------------- 231 (434)
T KOG2283|consen 175 L--NGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGKKKVYSFSSDGIMR--------------------- 231 (434)
T ss_pred h--cCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecceeeEEeccCCccc---------------------
Confidence 3 35555543 78999999999996 3999999999988887765432111
Q ss_pred CCCCCcceeeccEEEEEEecCCcEEEEecceeecCcccccCCCCCCCCCCCCCCCCcEEEEEEeeCCCCCCCCCCCcccc
Q 012952 228 PGEPGLTELVGDFKVLFHDRQGDFYCWLNTTMTENRKILDGSDLDGFDKRKVPSPGFQVEIVMIDYDGILPTKTKSDSAN 307 (452)
Q Consensus 228 ~~~~g~~~v~GDv~I~f~~~~~~F~~wFnT~Fi~n~l~L~k~eLD~~~k~k~~~~~F~VeL~F~d~~~~~p~~~~~~~~~ 307 (452)
..++.|+|.|.+.-+.+ ++||+.+.+.+++..+...+++.+..+..-..-|.+++.....+...|.....+...
T Consensus 232 -----~~~~~g~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 305 (434)
T KOG2283|consen 232 -----LGELDGKIVIPLGLRVD-VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFFQADLPIYVSNEFVF 305 (434)
T ss_pred -----ccccccceecccccccc-eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeecccccCCccccccccc
Confidence 11235555555554444 778888888888888888888888776655666778888888888888888888877
Q ss_pred ccCCCCCCCCccCCCCCCcCCCCCCCCCCCCCCCcccCCCccccccchhh
Q 012952 308 RRQDCSTDYASVPTDGATIGPNHRKVTKSEDNDDVFSDSDGEEADTSKSR 357 (452)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vfsd~~~~~~~~~~~~ 357 (452)
.-...+......+....++..-.+......+.++.+..+++++.+..+..
T Consensus 306 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (434)
T KOG2283|consen 306 NFFQVSLEVENTPNDDQSSPLTPNTEQSSTKSDSYVTLNGGSEPGPDQLT 355 (434)
T ss_pred cccceeeecccCccccccccccCCCcccccccccccccccccccCccccc
Confidence 77777766666665555554445666666677899999999988776654
No 2
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.88 E-value=1.3e-21 Score=180.99 Aligned_cols=144 Identities=22% Similarity=0.389 Sum_probs=119.2
Q ss_pred CceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccc---cCceEEeecCCCCCCCHHHHHH
Q 012952 1 MTYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALF---QGKVACFPFDDHNCPPIQLIAS 77 (452)
Q Consensus 1 LtYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f---~~~V~~~p~pD~~~P~l~~L~~ 77 (452)
++|||.|+|+|.-|... .+.+....|+.. +...|+|+| +..|+...+ +-.+.++||+|+.+|+.+.+..
T Consensus 11 ~~~~~~r~~~~~~P~~~-----~~~~~l~~L~~~--gI~~Iv~l~-~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~ 82 (166)
T PTZ00242 11 IEYVLFKFLILDAPSPS-----NLPLYIKELQRY--NVTHLVRVC-GPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDN 82 (166)
T ss_pred eeeeceEEEEecCCCcc-----cHHHHHHHHHhC--CCeEEEecC-CCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHH
Confidence 68999999999999763 344555666666 578999997 566776544 3468889999999999998888
Q ss_pred HHHHHHHHHHh--cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHHH
Q 012952 78 FCRSAYSWLKE--DILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERI 155 (452)
Q Consensus 78 f~~~v~~wL~~--d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~l 155 (452)
+++.++.++.. ..+++|+|||.+|+||||++||||||..+.+ ++++|+.+++.+| ++...+.|++||..|...
T Consensus 83 ~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~-s~~eAi~~vr~~R----~~~i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 83 WLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGM-EPLDAVGFVREKR----KGAINQTQLQFLKKYKPR 157 (166)
T ss_pred HHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHC----CCCchHHHHHHHHHHHHH
Confidence 88888888765 5578999999999999999999999998866 8999999999999 333468899999999887
Q ss_pred Hh
Q 012952 156 LT 157 (452)
Q Consensus 156 L~ 157 (452)
++
T Consensus 158 ~~ 159 (166)
T PTZ00242 158 KK 159 (166)
T ss_pred hc
Confidence 65
No 3
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.86 E-value=1.2e-21 Score=174.08 Aligned_cols=117 Identities=32% Similarity=0.466 Sum_probs=88.6
Q ss_pred CCCcceeEeeEEeecCCCc-----ccCeEEEEeCCceEEeccCCCccccCCCcceeeecCCCCeEEEEcCCCCCcceeec
Q 012952 164 QPARRCMLRGFRLLQCPYW-----IRPSITIFNHSGILFSTRKHPKTKDLMPEDFWIKAPKKGIVVFALPGEPGLTELVG 238 (452)
Q Consensus 164 ~p~~~l~L~~i~l~~~P~~-----~rP~i~I~~~~~~l~st~~~~~~k~l~p~~~~~~~~~~g~~~f~l~~~~g~~~v~G 238 (452)
|+++++.|++|+|+++|.+ |||+++|++++..++++........ .. ..+.+.+.++. .++|+|
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~-------~~--~~~~~~~~~~~---~~~l~G 68 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPK-------SY--EQDSVIIELPK---NLPLRG 68 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCC-------EE--ETTCEEEEEEE---EEEEES
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccc-------cc--cceeEEEEeCC---CCeEeC
Confidence 3568999999999999976 9999999999999985443222110 01 12334555543 468999
Q ss_pred cEEEEEEec-------CCcEEEEecceeec---CcccccCCCCCCCCCC--CCCCCCcEEEEEEee
Q 012952 239 DFKVLFHDR-------QGDFYCWLNTTMTE---NRKILDGSDLDGFDKR--KVPSPGFQVEIVMID 292 (452)
Q Consensus 239 Dv~I~f~~~-------~~~F~~wFnT~Fi~---n~l~L~k~eLD~~~k~--k~~~~~F~VeL~F~d 292 (452)
||+|+|+++ +.||+|||||+|++ +.+.|+|+|||+++++ ++|+++|+|||+|++
T Consensus 69 DV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 69 DVLIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred CEEEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 999999985 35999999999998 5899999999999998 999999999999985
No 4
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.81 E-value=3.4e-19 Score=167.71 Aligned_cols=145 Identities=28% Similarity=0.424 Sum_probs=121.8
Q ss_pred CceecCc-eEEEcCCCCC---CCCC---CCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccC---ceEEeecCCCCCC
Q 012952 1 MTYITEN-IIAMGFPAGD---ISSG---NHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQG---KVACFPFDDHNCP 70 (452)
Q Consensus 1 LtYIT~r-IIam~~P~~~---~e~~---N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~---~V~~~p~pD~~~P 70 (452)
.+||++. +|+..-|... ++++ +-...+..+++ |...-.++.| .++.||++.|.. ..++++++|..+|
T Consensus 53 fnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~--~~~v~s~vrl-n~~~yd~~~f~~~Gi~h~~l~f~Dg~tP 129 (225)
T KOG1720|consen 53 FNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFK--NNNVTSIVRL-NKRLYDAKRFTDAGIDHHDLFFADGSTP 129 (225)
T ss_pred cceeccchhhhhcCccccccchhhcccccCChhHHHHhh--hcccceEEEc-CCCCCChHHhcccCceeeeeecCCCCCC
Confidence 3799986 8888877643 3343 55777888888 3346678888 589999998865 3678999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHH
Q 012952 71 PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVK 150 (452)
Q Consensus 71 ~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~ 150 (452)
+++.+.+|++.++..++ .++|+|||++|.||||+||||||||...+ ++.|||+++|..|. .+|+.|.|..++.
T Consensus 130 ~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGRTG~liAc~lmy~~g~-ta~eaI~~lR~~Rp---G~V~gpqQ~~l~~ 202 (225)
T KOG1720|consen 130 TDAIVKEFVKIVENAEK---GGKIAVHCKAGLGRTGTLIACYLMYEYGM-TAGEAIAWLRICRP---GAVIGPQQHKLLH 202 (225)
T ss_pred CHHHHHHHHHHHHHHHh---cCeEEEEeccCCCchhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---ccccCHHHHHHHH
Confidence 99999999999998876 48999999999999999999999999777 99999999999992 4588999999998
Q ss_pred HHHHH
Q 012952 151 YFERI 155 (452)
Q Consensus 151 Yf~~l 155 (452)
.+..+
T Consensus 203 ~q~~~ 207 (225)
T KOG1720|consen 203 KQRDL 207 (225)
T ss_pred HHHHH
Confidence 88774
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.79 E-value=1.4e-18 Score=168.10 Aligned_cols=138 Identities=20% Similarity=0.372 Sum_probs=111.3
Q ss_pred ecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCccccc---CceEEeecCCCCCCCHHHHHHHHH
Q 012952 4 ITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQ---GKVACFPFDDHNCPPIQLIASFCR 80 (452)
Q Consensus 4 IT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~---~~V~~~p~pD~~~P~l~~L~~f~~ 80 (452)
-.-|+|++.-|... .+...+..|+.. +...|+++| |+.|+...+. .++.++||+|+.+|+.+.+.+|+.
T Consensus 90 ~~~rfLi~~~P~~~-----~~~~yl~eLk~~--gV~~lVrlc-E~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~ 161 (241)
T PTZ00393 90 GKIKILILDAPTND-----LLPLYIKEMKNY--NVTDLVRTC-ERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLT 161 (241)
T ss_pred CceeEEEeCCCCHH-----HHHHHHHHHHHc--CCCEEEECC-CCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHH
Confidence 34488888888542 233444555555 467899997 7788877653 468999999999999999999998
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHHHHh
Q 012952 81 SAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 81 ~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
.++..++. ++.|+|||++|+||||+|+||||+..++ ++++|+++++.+| ++..+..|++||..|+..+.
T Consensus 162 ~i~~~l~~--g~~VaVHC~AGlGRTGtl~AayLI~~Gm--speeAI~~VR~~R----PgAIn~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 162 IVNNVIKN--NRAVAVHCVAGLGRAPVLASIVLIEFGM--DPIDAIVFIRDRR----KGAINKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcc
Confidence 88877743 5789999999999999999999999765 8999999999999 55457899999998887654
No 6
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.59 E-value=1.8e-14 Score=127.85 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=99.1
Q ss_pred ceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCC-HHHHHHHHH
Q 012952 2 TYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPP-IQLIASFCR 80 (452)
Q Consensus 2 tYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~-l~~L~~f~~ 80 (452)
+-|+++|+.+++|... + ..+|... |...|+||+.+.. .......++.++|+.|...++ ...+..+++
T Consensus 2 ~~I~~~l~~G~~~~~~--------~-~~~l~~~--gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~ 69 (138)
T smart00195 2 SEILPHLYLGSYSSAL--------N-LALLKKL--GITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVE 69 (138)
T ss_pred cEEeCCeEECChhHcC--------C-HHHHHHc--CCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHH
Confidence 5699999999999642 2 3566665 5678999975543 222233478999999965444 455555555
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHH
Q 012952 81 SAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFER 154 (452)
Q Consensus 81 ~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~ 154 (452)
.+..... .+++|+|||.+|+||||++++||||+...+ ++++|+++++.+|. .....+.|++.|..|++
T Consensus 70 ~i~~~~~--~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~-~~~~A~~~v~~~R~---~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 70 FIEDAEK--KGGKVLVHCQAGVSRSATLIIAYLMKYRNL-SLNDAYDFVKDRRP---IISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHHhc--CCCeEEEECCCCCchHHHHHHHHHHHHhCC-CHHHHHHHHHHHCC---ccCCCHhHHHHHHHHhh
Confidence 5555443 357999999999999999999999998777 89999999999993 22356788888877764
No 7
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.51 E-value=2.1e-13 Score=120.35 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=96.0
Q ss_pred CceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCcc-CcccccCceEEeecCCCCCCCHH-HHHHH
Q 012952 1 MTYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLY-DAALFQGKVACFPFDDHNCPPIQ-LIASF 78 (452)
Q Consensus 1 LtYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~y-d~s~f~~~V~~~p~pD~~~P~l~-~L~~f 78 (452)
+|-|+++|++.++|... + ..+|.+. +.-.|+||+.+..+ ....-...+.++|+.|...+++. .+..+
T Consensus 2 ~~~i~~~l~~g~~~~~~--------d-~~~L~~~--gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (139)
T cd00127 2 LSEITPGLYLGSYPAAS--------D-KELLKKL--GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEA 70 (139)
T ss_pred cCEEcCCeEECChhHhc--------C-HHHHHHc--CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHH
Confidence 57899999999999642 2 3345544 46789999865443 11122346888999998866553 45555
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHH
Q 012952 79 CRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYF 152 (452)
Q Consensus 79 ~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf 152 (452)
++.+...+.. +++|+|||.+|.||||+++++|||..+.+ ++++|+++++.+|.. ....+.+++.|.-|
T Consensus 71 ~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~-~~~~a~~~vr~~r~~---~~~~~~~~~~l~~~ 138 (139)
T cd00127 71 VDFIDDAREK--GGKVLVHCLAGVSRSATLVIAYLMKTLGL-SLREAYEFVKSRRPI---ISPNAGFMRQLKEY 138 (139)
T ss_pred HHHHHHHHhc--CCcEEEECCCCCchhHHHHHHHHHHHcCC-CHHHHHHHHHHHCCc---cCCCHHHHHHHHHh
Confidence 6666555443 47999999999999999999999998877 899999999999942 22445555555433
No 8
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-13 Score=128.45 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=81.4
Q ss_pred cCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhcccc
Q 012952 56 QGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCV 135 (452)
Q Consensus 56 ~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~ 135 (452)
..++.++|++|+.+|++..+.+++..++..++.. +.|||||.+|+|||||++|||||+.+.+..+++++.+.+.+|..
T Consensus 72 ~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g--~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~ 149 (180)
T COG2453 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKG--KKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG 149 (180)
T ss_pred CceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcC--CeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 3468999999999999999999999999888664 49999999999999999999999997777999999999888831
Q ss_pred CCceeecccHHHHHHHHHHHHh
Q 012952 136 DGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 136 ~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
.+..+.|.+|...+.....
T Consensus 150 ---~v~~~~q~~~~~e~~~~~~ 168 (180)
T COG2453 150 ---AVVTEIQHLFELEQELFRK 168 (180)
T ss_pred ---ccccHHHHHHHHHHHHHHh
Confidence 5677778777766555443
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.47 E-value=3e-13 Score=118.87 Aligned_cols=119 Identities=28% Similarity=0.316 Sum_probs=90.1
Q ss_pred HHHHHhcCCCeEEEEEeCcCCcc--CcccccCceEEeecCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCCh
Q 012952 28 IKFFETHHKGKYKVYNLCSERLY--DAALFQGKVACFPFDDH-NCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMAR 104 (452)
Q Consensus 28 ~~fL~~~h~~~y~V~NL~sEr~y--d~s~f~~~V~~~p~pD~-~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGR 104 (452)
..+|... +.-.|+|++.+... ........+.++|+.|. ..|....+..+++.++.+... ++.|+|||.+|.||
T Consensus 11 ~~~l~~~--~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~R 86 (133)
T PF00782_consen 11 IAFLKNL--GITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISE--GGKVLVHCKAGLSR 86 (133)
T ss_dssp HHHHHHT--TEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHT--TSEEEEEESSSSSH
T ss_pred HHHHHHC--CCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcc--cceeEEEeCCCccc
Confidence 5677666 57789999754332 12233446888999994 455566777777777777544 57999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHH
Q 012952 105 TGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFER 154 (452)
Q Consensus 105 TGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~ 154 (452)
||++++||||+.+.+ +.++|+.+++.+|.. ....+.|+++|..|++
T Consensus 87 S~~v~~ayLm~~~~~-~~~~A~~~v~~~rp~---~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 87 SGAVAAAYLMKKNGM-SLEEAIEYVRSRRPQ---INPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHHHHHHHTS-SHHHHHHHHHHHSTT---STHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCC-CHHHHHHHHHHHCCC---CCCCHHHHHHHHHhhc
Confidence 999999999998777 899999999999932 2345678888887764
No 10
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.44 E-value=1.8e-13 Score=113.95 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=72.1
Q ss_pred ceEEeecCCCCCCCH-HHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChhHHHHHHHHHHhcCC-----CCHHHHHHHhh
Q 012952 58 KVACFPFDDHNCPPI-QLIASFCRSAYSWLKEDI-LNVVVVHCKAGMARTGLMICSLLLFLKFF-----PTAEEAIDYYN 130 (452)
Q Consensus 58 ~V~~~p~pD~~~P~l-~~L~~f~~~v~~wL~~d~-~nvVvVHCkaGkGRTGt~iaayLl~~~~~-----~t~eeAl~~f~ 130 (452)
++.+.+|||+++|.. ..+++|+..+..+....+ +++|+|||.+|+||||++|++|++..+.. .+..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456789999999965 899999999999987543 57999999999999999999999887642 35567777777
Q ss_pred hccccCCceeecccHHHHHHH
Q 012952 131 QKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 131 ~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
..|. ..+..+.|+.|++.
T Consensus 84 ~~r~---~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRP---GMVQTFEQYLFLYR 101 (105)
T ss_pred hhhh---hhCCcHHHHHHHHH
Confidence 6662 45677778877754
No 11
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.44 E-value=1.8e-13 Score=113.95 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=72.1
Q ss_pred ceEEeecCCCCCCCH-HHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChhHHHHHHHHHHhcCC-----CCHHHHHHHhh
Q 012952 58 KVACFPFDDHNCPPI-QLIASFCRSAYSWLKEDI-LNVVVVHCKAGMARTGLMICSLLLFLKFF-----PTAEEAIDYYN 130 (452)
Q Consensus 58 ~V~~~p~pD~~~P~l-~~L~~f~~~v~~wL~~d~-~nvVvVHCkaGkGRTGt~iaayLl~~~~~-----~t~eeAl~~f~ 130 (452)
++.+.+|||+++|.. ..+++|+..+..+....+ +++|+|||.+|+||||++|++|++..+.. .+..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456789999999965 899999999999987543 57999999999999999999999887642 35567777777
Q ss_pred hccccCCceeecccHHHHHHH
Q 012952 131 QKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 131 ~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
..|. ..+..+.|+.|++.
T Consensus 84 ~~r~---~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRP---GMVQTFEQYLFLYR 101 (105)
T ss_pred hhhh---hhCCcHHHHHHHHH
Confidence 6662 45677778877754
No 12
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.42 E-value=3.1e-12 Score=113.29 Aligned_cols=110 Identities=27% Similarity=0.484 Sum_probs=95.1
Q ss_pred CeEEEEEeCcCCccCccccc---CceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHH
Q 012952 37 GKYKVYNLCSERLYDAALFQ---GKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLL 113 (452)
Q Consensus 37 ~~y~V~NL~sEr~yd~s~f~---~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayL 113 (452)
|...|+.+| |-.||...+. ..|.++||.|+.+|+.+.+-.....+..-.++.|+..|.|||-+|.||..+++|.-|
T Consensus 41 gvttvVRVC-e~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalal 119 (173)
T KOG2836|consen 41 GVTTVVRVC-EPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALAL 119 (173)
T ss_pred CCeEEEEec-ccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHH
Confidence 578899998 7789876543 368999999999998877777777777777889999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHH
Q 012952 114 LFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFE 153 (452)
Q Consensus 114 l~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~ 153 (452)
+..++ ..++|+++++++| +|..+..|+.||..|.
T Consensus 120 ie~gm--kyedave~ir~kr----rga~n~kql~~lekyr 153 (173)
T KOG2836|consen 120 IEAGM--KYEDAVEMIRQKR----RGAINSKQLLYLEKYR 153 (173)
T ss_pred HHccc--cHHHHHHHHHHHh----hccccHHHHHHHHHhC
Confidence 99998 8999999999999 7888899999987654
No 13
>PRK12361 hypothetical protein; Provisional
Probab=99.37 E-value=6.8e-12 Score=135.98 Aligned_cols=137 Identities=20% Similarity=0.158 Sum_probs=104.3
Q ss_pred ceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccC-cccc--cCceEEeecCCCCCCCHHHHHHH
Q 012952 2 TYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYD-AALF--QGKVACFPFDDHNCPPIQLIASF 78 (452)
Q Consensus 2 tYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd-~s~f--~~~V~~~p~pD~~~P~l~~L~~f 78 (452)
+-|++.++.+++|.. .|+ .+|.+. +.-.|+||+.|.... ...+ ...+.++|+.|+..|.++.+.+.
T Consensus 96 ~~I~~~l~lG~~~~a--------~d~-~~L~~~--gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a 164 (547)
T PRK12361 96 QKIDENLYLGCRLFP--------ADL-EKLKSN--KITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQA 164 (547)
T ss_pred eEEcCcEEECCCCCc--------ccH-HHHHHc--CCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHH
Confidence 458999999999854 233 355443 456899998664321 1122 23688899999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHH
Q 012952 79 CRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFER 154 (452)
Q Consensus 79 ~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~ 154 (452)
++.|++.+++ ++.|+|||.+|+|||+++++||||..+..-+.++|+++++++|. ....++.|++.+..|.+
T Consensus 165 ~~~i~~~~~~--~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp---~v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 165 INWIHRQVRA--NKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK---TARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHHHHHHC--CCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHH
Confidence 9988887765 46899999999999999999999987533399999999999994 23467888888876643
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.36 E-value=3.3e-12 Score=117.69 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=69.4
Q ss_pred cCceEEEcCCCCCCCCC-CCHHHHHHHHHhcCCCeEEEEEeCcCC---ccCcc-------cccCceEEeecCCCCCCCHH
Q 012952 5 TENIIAMGFPAGDISSG-NHMEEVIKFFETHHKGKYKVYNLCSER---LYDAA-------LFQGKVACFPFDDHNCPPIQ 73 (452)
Q Consensus 5 T~rIIam~~P~~~~e~~-N~i~dV~~fL~~~h~~~y~V~NL~sEr---~yd~s-------~f~~~V~~~p~pD~~~P~l~ 73 (452)
+.+|-.+..|...+... .+++.=...|... +.-.|+.|+... .|... .....|+++|++|..+|+++
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~--G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~ 117 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKDW--GAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFA 117 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHHT--T--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HH
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHHC--CCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHH
Confidence 34666667776432211 3444334445443 456677787322 23321 22346899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHH
Q 012952 74 LIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAI 126 (452)
Q Consensus 74 ~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl 126 (452)
.+.+++..+..+|++ ++.|+|||++|.||||+++||+|+..+..-++++||
T Consensus 118 ~~~~i~~eL~~~L~~--g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 118 AAWQILEELAARLEN--GRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHHT--T--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHHc--CCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999999987 478999999999999999999999988655898886
No 15
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.25 E-value=2.8e-11 Score=109.66 Aligned_cols=92 Identities=25% Similarity=0.327 Sum_probs=77.5
Q ss_pred ceEEeecCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccC
Q 012952 58 KVACFPFDDH-NCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVD 136 (452)
Q Consensus 58 ~V~~~p~pD~-~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~ 136 (452)
....+|--|. ++|+++.|...++.|+..+.. +..|+|||+||+|||+||++||||..+.+ ++++|++.++.+|.
T Consensus 77 E~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asL--GktvYVHCKAGRtRSaTvV~cYLmq~~~w-tpe~A~~~vr~iRp-- 151 (183)
T KOG1719|consen 77 EFLVIPTRDYTGAPSLENIQKAVEFIHKNASL--GKTVYVHCKAGRTRSATVVACYLMQHKNW-TPEAAVEHVRKIRP-- 151 (183)
T ss_pred eeEEeccccccCCCCHHHHHHHHHHHHhcccc--CCeEEEEecCCCccchhhhhhhhhhhcCC-CHHHHHHHHHhcCc--
Confidence 4556677775 689999999999999988765 46999999999999999999999999988 89999999999994
Q ss_pred CceeecccHHHHHHHHHHH
Q 012952 137 GKALVLPSQIRYVKYFERI 155 (452)
Q Consensus 137 ~kgv~~PSQ~RYl~Yf~~l 155 (452)
+-+.-|.|++-+.-|...
T Consensus 152 -~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 152 -RVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred -ceeecHHHHHHHHHHHHH
Confidence 345779999987654443
No 16
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.20 E-value=1e-10 Score=123.59 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=72.6
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHHHHhc-------CCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhh
Q 012952 59 VACFPFDDHNCPP-IQLIASFCRSAYSWLKED-------ILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYN 130 (452)
Q Consensus 59 V~~~p~pD~~~P~-l~~L~~f~~~v~~wL~~d-------~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~ 130 (452)
++...||||++|+ ...|+.|.+.++.+-+.. .+...||||+||.||||++|||+++......+.++.+..+|
T Consensus 426 FHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR 505 (535)
T PRK15375 426 LHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFR 505 (535)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 4445999999874 467888998888774322 11235899999999999999999987654457888888888
Q ss_pred hccccCCceeecccHHHHHHHHHHHH
Q 012952 131 QKRCVDGKALVLPSQIRYVKYFERIL 156 (452)
Q Consensus 131 ~kR~~~~kgv~~PSQ~RYl~Yf~~lL 156 (452)
..|. +.+|+.+.|+-.++-+..-|
T Consensus 506 ~qRn--g~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 506 NSRN--NRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred hcCC--ccccccHHHHHHHHHHHHHH
Confidence 7773 34789999999888766543
No 17
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.20 E-value=7.1e-11 Score=113.66 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred EEeecCCCCCCCH-HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhc----CCCCHHHHHHHhhhccc
Q 012952 60 ACFPFDDHNCPPI-QLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLK----FFPTAEEAIDYYNQKRC 134 (452)
Q Consensus 60 ~~~p~pD~~~P~l-~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~----~~~t~eeAl~~f~~kR~ 134 (452)
....|+|+++|+. ..++.|+..+..+......++|+|||.+|.||||++||++++... ...+..+++..+++.|.
T Consensus 134 ~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~ 213 (231)
T cd00047 134 QYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRP 213 (231)
T ss_pred eECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 3457999998855 789999999988764345689999999999999999999987654 22378888888888883
Q ss_pred cCCceeecccHHHHHHH
Q 012952 135 VDGKALVLPSQIRYVKY 151 (452)
Q Consensus 135 ~~~kgv~~PSQ~RYl~Y 151 (452)
..+..+.|++|++.
T Consensus 214 ---~~v~~~~Qy~f~~~ 227 (231)
T cd00047 214 ---GMVQTEEQYIFLYR 227 (231)
T ss_pred ---cccCCHHHHHHHHH
Confidence 46788999999865
No 18
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.17 E-value=8.5e-11 Score=118.55 Aligned_cols=93 Identities=5% Similarity=0.048 Sum_probs=64.6
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHH-------hcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC-CHHHHHHHh
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLK-------EDILNVVVVHCKAGMARTGLMICSLLLFLKFFP-TAEEAIDYY 129 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~-------~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~-t~eeAl~~f 129 (452)
+....|||+++| ....+++|+..|..... ....++|||||++|.||||++||+..+..++.. ..-+....+
T Consensus 181 fqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V 260 (298)
T PHA02740 181 FQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANAL 260 (298)
T ss_pred EeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 444599999999 57788999888775432 122469999999999999999999877654311 111222334
Q ss_pred hhccccCCceeecccHHHHHHH
Q 012952 130 NQKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 130 ~~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
...|.++...|+.+.|+.|++.
T Consensus 261 ~~lR~qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 261 KKVRQKKYGCMNCLDDYVFCYH 282 (298)
T ss_pred HHHHhhCccccCCHHHHHHHHH
Confidence 4444444467889999988864
No 19
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.16 E-value=1.3e-10 Score=113.97 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=71.9
Q ss_pred ceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhc----CCCCHHHHHHHhhhc
Q 012952 58 KVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLK----FFPTAEEAIDYYNQK 132 (452)
Q Consensus 58 ~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~----~~~t~eeAl~~f~~k 132 (452)
++....|||+++| ....+++|+..+..+... ..++|+|||.+|.||||++||++++..+ ...+..+++..++..
T Consensus 160 ~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~ 238 (258)
T smart00194 160 HYHYTNWPDHGVPESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQ 238 (258)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 3455699999999 678899999999987643 2579999999999999999999887543 223677888888877
Q ss_pred cccCCceeecccHHHHHHH
Q 012952 133 RCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 133 R~~~~kgv~~PSQ~RYl~Y 151 (452)
|. ..+..+.|++|++.
T Consensus 239 R~---~~v~~~~Qy~f~~~ 254 (258)
T smart00194 239 RP---GMVQTEEQYIFLYR 254 (258)
T ss_pred cc---cccCCHHHHHHHHH
Confidence 73 46788999999864
No 20
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.13 E-value=8.1e-11 Score=131.26 Aligned_cols=96 Identities=23% Similarity=0.302 Sum_probs=72.7
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcC-CCCHHHHHHHhhhccccC
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF-FPTAEEAIDYYNQKRCVD 136 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~-~~t~eeAl~~f~~kR~~~ 136 (452)
..+.-||||+|| +...++.|+..|..-.+ +.+-+|+|||.||+||||++|+.-++.+-+ ...+-+.+++++..|.++
T Consensus 1031 LQYtaWPDHg~P~D~~~FL~FleevrsvR~-~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1031 LQYTAWPDHGVPDDPNDFLDFLEEVRSVRR-GTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred eeecccccCCCCCChHHHHHHHHHHHHHhc-cCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 455699999999 67899999999987543 334599999999999999999875443322 223446677777777776
Q ss_pred CceeecccHHHHHHHHHHHHh
Q 012952 137 GKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 137 ~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
...|++++||+||+ +-||.
T Consensus 1110 ~~mVQT~~QYkFVy--evil~ 1128 (1144)
T KOG0792|consen 1110 AMMVQTLSQYKFVY--EVILR 1128 (1144)
T ss_pred hhhccchHHhhHHH--HHHHH
Confidence 77899999999984 44554
No 21
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.10 E-value=2.1e-10 Score=115.96 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=64.2
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHHh----------cCCCeEEEEcCCCCChhHHHHHHHHHHhcCC----CCHH
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLKE----------DILNVVVVHCKAGMARTGLMICSLLLFLKFF----PTAE 123 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~----------d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~----~t~e 123 (452)
+....|||+++| ....+++|+..+..+... ...++|||||.+|.||||++||+..+..++- -+..
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~ 265 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLL 265 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHH
Confidence 344599999999 567899999988875321 1236999999999999999999987765431 1333
Q ss_pred HHHHHhhhccccCCceeecccHHHHHHH
Q 012952 124 EAIDYYNQKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 124 eAl~~f~~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
+++..+|+.| ...|+++.|+.|++.
T Consensus 266 ~~V~~lR~qR---~~~Vqt~~QY~F~y~ 290 (303)
T PHA02742 266 SIVRDLRKQR---HNCLSLPQQYIFCYF 290 (303)
T ss_pred HHHHHHHhhc---ccccCCHHHHHHHHH
Confidence 4444444444 456888888888753
No 22
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=99.10 E-value=3.9e-11 Score=123.52 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=68.6
Q ss_pred ceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChhHHHHHHHHHHhc----CCC---CHHHHHHH
Q 012952 58 KVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDI-LNVVVVHCKAGMARTGLMICSLLLFLK----FFP---TAEEAIDY 128 (452)
Q Consensus 58 ~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~-~nvVvVHCkaGkGRTGt~iaayLl~~~----~~~---t~eeAl~~ 128 (452)
+++...||||++| ....++.|+.+|+.-...-. -++|||||+||+|||||+|.+.+|... ... +....|.+
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqm 495 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQM 495 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHH
Confidence 3566799999999 56789999999986533211 369999999999999999988776643 222 44555566
Q ss_pred hhhccccCCceeecccHHHHHHHH
Q 012952 129 YNQKRCVDGKALVLPSQIRYVKYF 152 (452)
Q Consensus 129 f~~kR~~~~kgv~~PSQ~RYl~Yf 152 (452)
++..| ...|++..|++||||-
T Consensus 496 VRsqR---SGmVQTEaQYkFiY~A 516 (600)
T KOG0790|consen 496 VRSQR---SGMVQTEAQYKFIYVA 516 (600)
T ss_pred HHHHh---cchhhhHHhHHHHHHH
Confidence 66655 3558899999999853
No 23
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.04 E-value=5.9e-10 Score=113.08 Aligned_cols=88 Identities=15% Similarity=0.271 Sum_probs=63.0
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHHhc---------CCCeEEEEcCCCCChhHHHHHHHHHHhcC----CCCHHH
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLKED---------ILNVVVVHCKAGMARTGLMICSLLLFLKF----FPTAEE 124 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d---------~~nvVvVHCkaGkGRTGt~iaayLl~~~~----~~t~ee 124 (452)
++...|||+++| ....+++|+..+..+.+.. ..+++||||.+|.||||++||+.++..++ .-+..+
T Consensus 187 ~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~ 266 (312)
T PHA02747 187 FQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAK 266 (312)
T ss_pred EEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 344599999999 4667888888776654321 12689999999999999999998765442 114444
Q ss_pred HHHHhhhccccCCceeecccHHHHH
Q 012952 125 AIDYYNQKRCVDGKALVLPSQIRYV 149 (452)
Q Consensus 125 Al~~f~~kR~~~~kgv~~PSQ~RYl 149 (452)
++..+|..| ...|+.+.|+.|+
T Consensus 267 ~V~~lR~qR---~~~Vqt~~QY~F~ 288 (312)
T PHA02747 267 TAEKIREQR---HAGIMNFDDYLFI 288 (312)
T ss_pred HHHHHHhcc---ccccCCHHHHHHH
Confidence 555555554 4578899999998
No 24
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.02 E-value=5.4e-10 Score=113.95 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=64.7
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHHh-------cC--CCeEEEEcCCCCChhHHHHHHHHHHhcC----CCCHHH
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLKE-------DI--LNVVVVHCKAGMARTGLMICSLLLFLKF----FPTAEE 124 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~-------d~--~nvVvVHCkaGkGRTGt~iaayLl~~~~----~~t~ee 124 (452)
++...|||+++| ....+++|+..|..+... ++ .+++||||.+|.||||++||+.++..++ .-+..+
T Consensus 205 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~ 284 (323)
T PHA02746 205 FWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGE 284 (323)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHH
Confidence 344599999999 467899999998877432 11 3699999999999999999987765432 113444
Q ss_pred HHHHhhhccccCCceeecccHHHHHHH
Q 012952 125 AIDYYNQKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 125 Al~~f~~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
++..+|..| ...|+...|+.|++.
T Consensus 285 ~V~~lR~qR---~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 285 IVLKIRKQR---HSSVFLPEQYAFCYK 308 (323)
T ss_pred HHHHHHhcc---cccCCCHHHHHHHHH
Confidence 444444444 457888999988863
No 25
>PHA02738 hypothetical protein; Provisional
Probab=98.99 E-value=1.2e-09 Score=111.37 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=63.9
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHHHHh---------c---CCCeEEEEcCCCCChhHHHHHHHHHHhcCC----CC
Q 012952 59 VACFPFDDHNCP-PIQLIASFCRSAYSWLKE---------D---ILNVVVVHCKAGMARTGLMICSLLLFLKFF----PT 121 (452)
Q Consensus 59 V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~---------d---~~nvVvVHCkaGkGRTGt~iaayLl~~~~~----~t 121 (452)
+....|||+++| ....+++|+..|..+.+. + ..++|||||.+|.||||++||...+..++- -+
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vd 261 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVS 261 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcC
Confidence 344599999999 567889999888875321 1 135899999999999999999887665532 13
Q ss_pred HHHHHHHhhhccccCCceeecccHHHHHHH
Q 012952 122 AEEAIDYYNQKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 122 ~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
..+++..+++.| ...++.+.|+.|++.
T Consensus 262 v~~~V~~lR~qR---~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 262 IPSIVSSIRNQR---YYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHHHHHHhhh---hhccCCHHHHHHHHH
Confidence 334444444444 456888999988753
No 26
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.95 E-value=2.2e-09 Score=102.13 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=71.0
Q ss_pred ceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCC----CCHHHHHHHhhhc
Q 012952 58 KVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFF----PTAEEAIDYYNQK 132 (452)
Q Consensus 58 ~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~----~t~eeAl~~f~~k 132 (452)
++....|+++++| ....++.+++.+..+. ....++++|||.+|.||||++|++.++...+. .+..+++..+++.
T Consensus 137 ~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~ 215 (235)
T PF00102_consen 137 HFHYTNWPDDGVPPSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQ 215 (235)
T ss_dssp EEEEESSSSSSSGSSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTT
T ss_pred ceeeeeccccccccccchhhhhhhhccccc-cCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhh
Confidence 4455699999988 6788999999999887 45568999999999999999999998876542 2556666666666
Q ss_pred cccCCceeecccHHHHHHH
Q 012952 133 RCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 133 R~~~~kgv~~PSQ~RYl~Y 151 (452)
| ...+..+.|+.|++.
T Consensus 216 R---~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 216 R---PGAIQSPEQYRFCYM 231 (235)
T ss_dssp S---TTSSSSHHHHHHHHH
T ss_pred C---CCccCCHHHHHHHHH
Confidence 6 245778888888865
No 27
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.94 E-value=1.9e-09 Score=109.48 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=77.2
Q ss_pred cccccCceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC-CHHHHHHHh
Q 012952 52 AALFQGKVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFP-TAEEAIDYY 129 (452)
Q Consensus 52 ~s~f~~~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~-t~eeAl~~f 129 (452)
.+++..++.++.||||++| +...+++|.+.+..++... ..+++|||.+|.|||||++|..-|..+.-. ...+.+.++
T Consensus 248 ~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv 326 (374)
T KOG0791|consen 248 ESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVV 326 (374)
T ss_pred ccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccC-CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHH
Confidence 4456667888999999999 6688999999999999776 579999999999999999999876666522 244555667
Q ss_pred hhccccCCceeecccHHHHHHH
Q 012952 130 NQKRCVDGKALVLPSQIRYVKY 151 (452)
Q Consensus 130 ~~kR~~~~kgv~~PSQ~RYl~Y 151 (452)
.+.|..+..+|++-.|+-||++
T Consensus 327 ~~lR~~R~~mVqte~Qyvfl~~ 348 (374)
T KOG0791|consen 327 LELRSARMLMVQTEDQYVFLHQ 348 (374)
T ss_pred HHhhhccccccchHHHHHHHHH
Confidence 7777766666666677766654
No 28
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.82 E-value=3.2e-09 Score=103.78 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=68.8
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC------CH----HHHH
Q 012952 58 KVACFPFDDHNCPPIQLIASFCRSAYSWLKED-ILNVVVVHCKAGMARTGLMICSLLLFLKFFP------TA----EEAI 126 (452)
Q Consensus 58 ~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d-~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~------t~----eeAl 126 (452)
++....|.|.+.|++..|.+++..+. ... ..++++|||.||.|||||+||...+.+.--+ +. +-.+
T Consensus 187 hf~y~nW~D~~~p~i~sl~~~~~sl~---~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if 263 (302)
T COG5599 187 HFQYINWVDFNVPDIRSLTEVIHSLN---DSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIF 263 (302)
T ss_pred EEEecCccccCCcCHHHHHHHHHHhh---cCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHH
Confidence 34555999999997777776665543 121 3589999999999999999999887754321 11 2234
Q ss_pred HHhhhccccCCceeecccHHHHHHHHHHHH
Q 012952 127 DYYNQKRCVDGKALVLPSQIRYVKYFERIL 156 (452)
Q Consensus 127 ~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~lL 156 (452)
+.+...|.++.++|++..|..||+-.-..|
T Consensus 264 ~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 264 QIVLSLRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566777877778999999999987544333
No 29
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.70 E-value=3.2e-07 Score=84.67 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=79.8
Q ss_pred CceecCceEEE-cCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHH
Q 012952 1 MTYITENIIAM-GFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFC 79 (452)
Q Consensus 1 LtYIT~rIIam-~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~ 79 (452)
|+-||+-++.. |--+ ....+|.++ +..+|+|.+.|... ...-..+....|..|+.--.+...++.+
T Consensus 17 ~SqIt~sLfl~~GvaA----------~~k~~l~~~--~It~IiNat~E~pn-~~l~~~qy~kv~~~D~p~~~l~~hfD~v 83 (198)
T KOG1718|consen 17 MSQITPSLFLSNGVAA----------NDKLLLKKR--KITCIINATTEVPN-TSLPDIQYMKVPLEDTPQARLYDHFDPV 83 (198)
T ss_pred hhhcCcceeEeccccc----------cCHHHHHhc--CceEEEEcccCCCC-ccCCCceeEEEEcccCCcchhhhhhhHH
Confidence 34577777766 3221 223455555 57899999766432 2233345777888887654454433333
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccc
Q 012952 80 RSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRC 134 (452)
Q Consensus 80 ~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~ 134 (452)
.+...-+.. .++.++|||.||.+||+.+|.+|||....+ +..||..+++.+|.
T Consensus 84 AD~I~~v~~-~gG~TLvHC~AGVSRSAsLClAYLmK~~~m-sLreAy~~vKa~Rp 136 (198)
T KOG1718|consen 84 ADKIHSVIM-RGGKTLVHCVAGVSRSASLCLAYLMKYHCM-SLREAYHWVKARRP 136 (198)
T ss_pred HHHHHHHHh-cCCcEEEEEccccchhHHHHHHHHHHHccc-hHHHHHHHHHhhCc
Confidence 222222222 258999999999999999999999998876 89999999999994
No 30
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.57 E-value=9.7e-07 Score=88.58 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=86.5
Q ss_pred eecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccC-cccc-cCceEEeecCCCCCCCHHH-HHHHH
Q 012952 3 YITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYD-AALF-QGKVACFPFDDHNCPPIQL-IASFC 79 (452)
Q Consensus 3 YIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd-~s~f-~~~V~~~p~pD~~~P~l~~-L~~f~ 79 (452)
-|.++++..+++.. .-...|... +.-.|.|+..+..-. ...- ..+..+.+..|.....+.. +-+.+
T Consensus 77 ~i~p~l~lg~~~~~---------~~~~~l~~~--~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~ 145 (285)
T KOG1716|consen 77 EILPNLYLGSQGVA---------SDPDLLKKL--GITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAI 145 (285)
T ss_pred eecCCceecCcccc---------cchhhHHHc--CCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHH
Confidence 35556666665522 112233333 456788885332111 0111 1245666777766666644 33444
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHHHHh
Q 012952 80 RSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 80 ~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
..++..... ++.|+|||.+|++||.+++.||||+...+ +.++|+++++.+|... ..+..-++-+.-|+..+.
T Consensus 146 ~fI~~a~~~--~~~vlVHC~~GvSRSat~viAYlM~~~~~-~l~~A~~~vk~~R~~i---~PN~gf~~QL~~~e~~l~ 217 (285)
T KOG1716|consen 146 SFIEKAREK--GGKVLVHCQAGVSRSATLVIAYLMKYEGL-SLEDAYELVKSRRPII---SPNFGFLRQLLEFEKRLS 217 (285)
T ss_pred HHHHHHHhC--CCeEEEEcCCccchhHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc---CCCHHHHHHHHHHHHhhc
Confidence 444433333 58999999999999999999999998887 8999999999999421 144555666666666654
No 31
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.46 E-value=3.8e-07 Score=94.81 Aligned_cols=89 Identities=22% Similarity=0.348 Sum_probs=58.9
Q ss_pred CceEEeecCCCCCCC-HHHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCChhHHHHHHHHHHhcC-----CCCHHHHHHHh
Q 012952 57 GKVACFPFDDHNCPP-IQLIASFCRSAYSWLKED-ILNVVVVHCKAGMARTGLMICSLLLFLKF-----FPTAEEAIDYY 129 (452)
Q Consensus 57 ~~V~~~p~pD~~~P~-l~~L~~f~~~v~~wL~~d-~~nvVvVHCkaGkGRTGt~iaayLl~~~~-----~~t~eeAl~~f 129 (452)
.++.+..|||+++|. ...++.+++. ..+... ..++++|||.+|.||||++++...+...+ .....+.+..+
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i 342 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI 342 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 345667999999885 5666766654 222223 25799999999999999999876443332 22344555545
Q ss_pred hhccccCCceeecccHHHHHH
Q 012952 130 NQKRCVDGKALVLPSQIRYVK 150 (452)
Q Consensus 130 ~~kR~~~~kgv~~PSQ~RYl~ 150 (452)
+..| ...+++..|+.|++
T Consensus 343 R~qR---~~~vqt~~Qy~f~~ 360 (415)
T KOG0789|consen 343 RYQR---PGAVQSPLQYLFIY 360 (415)
T ss_pred HHHh---hhcccchhHHHHHH
Confidence 5544 35677788887775
No 32
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.44 E-value=7.6e-08 Score=108.88 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=79.2
Q ss_pred HHHhcCCCeEEEEEeCcC-CccCcccccCceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHH
Q 012952 30 FFETHHKGKYKVYNLCSE-RLYDAALFQGKVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGL 107 (452)
Q Consensus 30 fL~~~h~~~y~V~NL~sE-r~yd~s~f~~~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt 107 (452)
+.+.+--.+|.|.-++-+ ..++..+-..+++...||||++| ....|+.|++.+..+-.. ..+++||||+||.||||+
T Consensus 668 ~~~~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~-~aGPiVVHCSAGvGRTG~ 746 (1087)
T KOG4228|consen 668 LVQTKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPP-DAGPIVVHCSAGVGRTGC 746 (1087)
T ss_pred ceeeeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCc-CCCCEEEECCCCCCCcce
Confidence 333443445655555423 23454443445666799999999 457899999999876421 238999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH---HhhhccccCCceeecccHHHHHHHHHHHHh
Q 012952 108 MICSLLLFLKFFPTAEEAID---YYNQKRCVDGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 108 ~iaayLl~~~~~~t~eeAl~---~f~~kR~~~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
+|+..-|..++ ..+.-++ .+...|.++...|+.-+ .|+.-++.+|.
T Consensus 747 fi~iDaml~~~--~~e~~vdiy~~v~~lR~QR~~mVQt~e--QYiFi~~AllE 795 (1087)
T KOG4228|consen 747 FIVIDAMLDRL--ECEGKVDIYGHVKTLRRQRNNMVQTEE--QYIFIHEALLE 795 (1087)
T ss_pred EEEeHHHHHHH--HhhCccceechhHHHHhccccccccHH--HHHHHHHHHHH
Confidence 99887666554 2334444 44555655444454444 45555667665
No 33
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.23 E-value=2.5e-05 Score=69.94 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=76.4
Q ss_pred ceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcC--CccCcc---------cccCceEEeecCCCCCC
Q 012952 2 TYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSE--RLYDAA---------LFQGKVACFPFDDHNCP 70 (452)
Q Consensus 2 tYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sE--r~yd~s---------~f~~~V~~~p~pD~~~P 70 (452)
.-|++++.+.+-|.. +|+. .|.+. |.-.|+||++. +...+. .....+.++|+.... +
T Consensus 3 ~~i~~~~~~s~qlt~--------~d~~-~L~~~--GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~ 70 (135)
T TIGR01244 3 RKLTEHLYVSPQLTK--------ADAA-QAAQL--GFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-I 70 (135)
T ss_pred eEcCCCeeEcCCCCH--------HHHH-HHHHC--CCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-C
Confidence 357889888888843 4554 46555 56689999753 222221 124467788876554 4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhcc
Q 012952 71 PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133 (452)
Q Consensus 71 ~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR 133 (452)
+.+.+..|.+.+. . ..++|++||+.|+ |||++.+.++...+. +.+++++..+..-
T Consensus 71 ~~~~v~~f~~~~~----~-~~~pvL~HC~sG~-Rt~~l~al~~~~~g~--~~~~i~~~~~~~G 125 (135)
T TIGR01244 71 TPDDVETFRAAIG----A-AEGPVLAYCRSGT-RSSLLWGFRQAAEGV--PVEEIVRRAQAAG 125 (135)
T ss_pred CHHHHHHHHHHHH----h-CCCCEEEEcCCCh-HHHHHHHHHHHHcCC--CHHHHHHHHHHcC
Confidence 5556666655553 2 2478999999999 999999888887665 7888888776554
No 34
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.21 E-value=6.2e-06 Score=81.08 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=74.0
Q ss_pred CeEEEEEeCcCCc--cCcccccCceEEeecCCCCCCCHHH-HHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHH
Q 012952 37 GKYKVYNLCSERL--YDAALFQGKVACFPFDDHNCPPIQL-IASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLL 113 (452)
Q Consensus 37 ~~y~V~NL~sEr~--yd~s~f~~~V~~~p~pD~~~P~l~~-L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayL 113 (452)
+.-.|+|++.-.. |... -..++..+|+.||.---+.. +-+.+..|+...++ +.-|+|||.+|++|+.|++++||
T Consensus 197 gI~yviNVTpnlpn~fe~~-g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk--~cgvLVHClaGISRSvTvtvaYL 273 (343)
T KOG1717|consen 197 GIKYVINVTPNLPNNFENN-GEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK--NCGVLVHCLAGISRSVTVTVAYL 273 (343)
T ss_pred CceEEEecCCCCcchhhcC-CceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc--CCcEEEeeeccccchhHHHHHHH
Confidence 4556899963222 2110 11247788999997665533 23344444444333 46799999999999999999999
Q ss_pred HHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHHHHHh
Q 012952 114 LFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 114 l~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
|....+ +..+|.+++..++.-..+ +.--+-.|--|++.|.
T Consensus 274 Mqkl~l-slndAyd~Vk~kksnisP---NFnFMgQLldfertlg 313 (343)
T KOG1717|consen 274 MQKLNL-SLNDAYDFVKHKKSNISP---NFNFMGQLLDFERTLG 313 (343)
T ss_pred HHHhcc-chhhHHHHHHHhccCCCC---CcchhHHHHHHHHHhh
Confidence 998777 899999999988853332 2222333445566554
No 35
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.21 E-value=9.2e-06 Score=75.36 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=67.9
Q ss_pred eecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCc-cCcccc----cCceEEeecCCCCC----CCHH
Q 012952 3 YITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERL-YDAALF----QGKVACFPFDDHNC----PPIQ 73 (452)
Q Consensus 3 YIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~-yd~s~f----~~~V~~~p~pD~~~----P~l~ 73 (452)
-|.+.|+=.++|. ..-..||++.+ -=.|+||+.|.. .+...| ..++.+++...... ++.+
T Consensus 9 ~V~~~vYRS~~P~---------~~n~~fL~~L~--LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~ 77 (164)
T PF03162_consen 9 MVEPGVYRSAQPT---------PANFPFLERLG--LKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEE 77 (164)
T ss_dssp EEETTEEEESS-----------HHHHHHHHHHT---SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HH
T ss_pred CCCCCccCCCCCC---------hhhHHHHHHCC--CceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHH
Confidence 4677888888883 34456898865 337899975532 121112 23567777765544 2445
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCceeecccHHHHHHHHH
Q 012952 74 LIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRCVDGKALVLPSQIRYVKYFE 153 (452)
Q Consensus 74 ~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~~~~kgv~~PSQ~RYl~Yf~ 153 (452)
.+.++++.+. ...+.+|+|||..|+.|||++|+||=...+ + +...+++-|+.--. .+ ....-.+|+..|.
T Consensus 78 ~v~~aL~~il----d~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~-W-~~~~i~~Ey~~f~~--~~--~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 78 QVAEALEIIL----DPRNYPVLIHCNHGKDRTGLVVGCLRKLQG-W-SLSSIFDEYRRFAG--PK--IRYLDEQFIELFD 147 (164)
T ss_dssp HHHHHHHHHH-----GGG-SEEEE-SSSSSHHHHHHHHHHHHTT-B--HHHHHHHHHHHHG--GG----HHHHHHHHT--
T ss_pred HHHHHHHHHh----CCCCCCEEEEeCCCCcchhhHHHHHHHHcC-C-CHHHHHHHHHHhcC--CC--CcHHHHHHHHhcC
Confidence 5555555442 223579999999999999999999996544 5 78888886652110 00 1234566776665
Q ss_pred HHH
Q 012952 154 RIL 156 (452)
Q Consensus 154 ~lL 156 (452)
.=+
T Consensus 148 ~~~ 150 (164)
T PF03162_consen 148 VEL 150 (164)
T ss_dssp ---
T ss_pred cce
Confidence 433
No 36
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.20 E-value=4.6e-06 Score=86.57 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHhcCCCeEEEEEeCc-CCccCcccccC---ceEEeecCCCC-CCCHHHHHHHHHHHHHHHH--hcCCCeE
Q 012952 22 NHMEEVIKFFETHHKGKYKVYNLCS-ERLYDAALFQG---KVACFPFDDHN-CPPIQLIASFCRSAYSWLK--EDILNVV 94 (452)
Q Consensus 22 N~i~dV~~fL~~~h~~~y~V~NL~s-Er~yd~s~f~~---~V~~~p~pD~~-~P~l~~L~~f~~~v~~wL~--~d~~nvV 94 (452)
.+..++...|.++.....+++.|.. .|.|+...... .....-.+.+. +|.......|+..+..+.. ..+...|
T Consensus 48 f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI 127 (393)
T KOG2386|consen 48 FQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELI 127 (393)
T ss_pred cCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEE
Confidence 5688999999988766777888842 45674333222 23334555555 8999999999999999998 6777899
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhccc
Q 012952 95 VVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKRC 134 (452)
Q Consensus 95 vVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR~ 134 (452)
.|||..|+.|||.|||+||+..+.+ +..+|+..|...|.
T Consensus 128 ~vhcthG~NrtgyLI~~yL~~~~~~-s~~~aik~f~~~r~ 166 (393)
T KOG2386|consen 128 GVHCTHGLNRTGYLICAYLADVGGY-SSSEAIKRFADARP 166 (393)
T ss_pred EEeCCCcccccceeeeeeeeeccCc-cHHHHHHHHHHhCC
Confidence 9999999999999999999999987 89999999999993
No 37
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.00 E-value=9.6e-06 Score=88.09 Aligned_cols=89 Identities=17% Similarity=0.332 Sum_probs=68.1
Q ss_pred ceEEeecCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHH-----HHHHHhhh
Q 012952 58 KVACFPFDDHNCP-PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAE-----EAIDYYNQ 131 (452)
Q Consensus 58 ~V~~~p~pD~~~P-~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~e-----eAl~~f~~ 131 (452)
+++.+.|++.++| +-..|++|-+.|.+..+.. ..+|+|||++|-|||||.|...|+..++...+. ..++.++.
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGR-ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRD 972 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGR-SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRD 972 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCC-CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence 5677899999999 5578999999998877543 579999999999999999999988876643332 23455566
Q ss_pred ccccCCceeecccHHHHHH
Q 012952 132 KRCVDGKALVLPSQIRYVK 150 (452)
Q Consensus 132 kR~~~~kgv~~PSQ~RYl~ 150 (452)
.| ...|.+..|..|+.
T Consensus 973 QR---~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 973 QR---PGMVATKDQFEFAL 988 (1004)
T ss_pred cC---CcceeehhhhHHHH
Confidence 66 23467788887764
No 38
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.93 E-value=8.9e-06 Score=92.54 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=76.7
Q ss_pred eEEEEEeCcCCccCcccccCceEEeecCCCCCCCH--HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHH
Q 012952 38 KYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPI--QLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLF 115 (452)
Q Consensus 38 ~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l--~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~ 115 (452)
.|.|-|+. +. ..+...+++...||..+.|+. ..+..+......|-+....++++|||.+|.||+|++||+-++.
T Consensus 967 ~f~i~n~~-~~---~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~ 1042 (1087)
T KOG4228|consen 967 EFGVTNER-EK---QSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILL 1042 (1087)
T ss_pred hheeeecc-cc---CceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHH
Confidence 45666652 21 222223456679998886644 4566777777888777768999999999999999999998877
Q ss_pred hcCCCCHHHHHHHh---hhccccCCceeecccHHHHHHHHHHHHhh
Q 012952 116 LKFFPTAEEAIDYY---NQKRCVDGKALVLPSQIRYVKYFERILTY 158 (452)
Q Consensus 116 ~~~~~t~eeAl~~f---~~kR~~~~kgv~~PSQ~RYl~Yf~~lL~~ 158 (452)
.++ ..+..+|+| +..|..+...+....|+.|+| +.++++
T Consensus 1043 e~~--~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcY--dv~~~y 1084 (1087)
T KOG4228|consen 1043 ERM--RKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCY--DVALEY 1084 (1087)
T ss_pred HHH--hhcCceeeehhhhhhhhcCccccCcHHHHHHHH--HHHHHh
Confidence 665 455555544 444544445677888888884 444443
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.91 E-value=1.9e-05 Score=72.07 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=39.9
Q ss_pred cCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHH
Q 012952 56 QGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLF 115 (452)
Q Consensus 56 ~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~ 115 (452)
.-.+.++|++||..|..+.+-.|+..+... .++..+++||.+|+|||.++.++|.|.
T Consensus 92 g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 92 GLRYYRIPITDHQAPDPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp T-EEEEEEE-TTS---HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCcCCCCHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346889999999999988888888777654 224679999999999999888777654
No 40
>PLN02727 NAD kinase
Probab=97.77 E-value=0.00019 Score=81.28 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcc----------cccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAA----------LFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNV 93 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s----------~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nv 93 (452)
.+++.. |..+ |-=.|+||+.+...+.. .....++++|..+...|+.+.+.+|.+.+++ .-..+
T Consensus 271 pe~la~-LA~~--GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~----slpkP 343 (986)
T PLN02727 271 EEGLKW-LLEK--GFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD----SSKKP 343 (986)
T ss_pred HHHHHH-HHHC--CCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHh----hcCCC
Confidence 566654 4444 45679999754331111 1234688999999999999999998877743 22479
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 94 VVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 94 VvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
|++||+.|.+|+|+|+|||+.|.-.
T Consensus 344 VLvHCKSGarRAGamvA~yl~~~~~ 368 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQYMTR 368 (986)
T ss_pred EEEECCCCCchHHHHHHHHHHHHcc
Confidence 9999999999999999999998665
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.68 E-value=9.2e-05 Score=68.04 Aligned_cols=43 Identities=33% Similarity=0.549 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHH
Q 012952 82 AYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAID 127 (452)
Q Consensus 82 v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~ 127 (452)
+-.+|...+ +++++||.+||-|||+++|.+|...+. ..++.++
T Consensus 116 ~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV--~~~~I~~ 158 (164)
T PF13350_consen 116 IFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV--PDEDIIA 158 (164)
T ss_dssp HHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC--CHHHHHH
Confidence 344444455 799999999999999999999988887 4555554
No 42
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.93 E-value=0.002 Score=63.65 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhhhcc
Q 012952 90 ILNVVVVHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYNQKR 133 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~~kR 133 (452)
.+.+|++||.+|+-|||+++|||+...+.. ....+-++...-+
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~-~~~v~~dyl~~~~ 177 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGS-DETVAADYLLTNR 177 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCc-hhHHHHHHHHcCC
Confidence 358999999999999999999999998874 3334444444433
No 43
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=96.78 E-value=0.0062 Score=59.46 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCeEEEEEeCcCCccCcccc------cCceEEeecCCCC----CCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 012952 26 EVIKFFETHHKGKYKVYNLCSERLYDAALF------QGKVACFPFDDHN----CPPIQLIASFCRSAYSWLKEDILNVVV 95 (452)
Q Consensus 26 dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f------~~~V~~~p~pD~~----~P~l~~L~~f~~~v~~wL~~d~~nvVv 95 (452)
.-..||++-| ...|+-||.|. |....+ ...++++.++... -|......+.+..+.+.|-...+.+++
T Consensus 76 ~NfsFL~~L~--LksIisL~pE~-yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~L 152 (249)
T KOG1572|consen 76 ENFSFLKTLH--LKSIISLCPEP-YPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPIL 152 (249)
T ss_pred cchHHHHHhh--hheEEEecCCC-CChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceE
Confidence 4466887765 44566787664 433211 2357777777554 454333333333333344344568999
Q ss_pred EEcCCCCChhHHHHHHHHHHhcCCCCHHHHHHHhh
Q 012952 96 VHCKAGMARTGLMICSLLLFLKFFPTAEEAIDYYN 130 (452)
Q Consensus 96 VHCkaGkGRTGt~iaayLl~~~~~~t~eeAl~~f~ 130 (452)
|||..|+-|||++|.|+-...++ .....++-|.
T Consensus 153 ihc~rGkhRtg~lVgclRklq~W--~lssil~Ey~ 185 (249)
T KOG1572|consen 153 IHCKRGKHRTGCLVGCLRKLQNW--SLSSILDEYL 185 (249)
T ss_pred EecCCCCcchhhhHHHHHHHhcc--chhHHHHHHH
Confidence 99999999999999998755453 3445555443
No 44
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.63 E-value=0.021 Score=49.71 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=51.6
Q ss_pred CceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcC--CccCc---------ccccCceEEeecCCCCC
Q 012952 1 MTYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSE--RLYDA---------ALFQGKVACFPFDDHNC 69 (452)
Q Consensus 1 LtYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sE--r~yd~---------s~f~~~V~~~p~pD~~~ 69 (452)
+.-|++++.+.+.|. .+++.. |... |--.|+||+.. ..-.+ ......+.++|+... .
T Consensus 2 i~~i~~~~~vs~Q~~--------~~d~~~-la~~--GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~ 69 (110)
T PF04273_consen 2 IRQISDDLSVSGQPS--------PEDLAQ-LAAQ--GFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-A 69 (110)
T ss_dssp -EEEETTEEEECS----------HHHHHH-HHHC--T--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T
T ss_pred CEecCCCeEECCCCC--------HHHHHH-HHHC--CCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-C
Confidence 356899999999994 366664 4443 45579999732 21111 123446888999864 4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHH
Q 012952 70 PPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICS 111 (452)
Q Consensus 70 P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaa 111 (452)
++.+.+..|.+.+. .. .++|++||+.|. |++.+.+.
T Consensus 70 ~~~~~v~~f~~~l~----~~-~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 70 ITEEDVEAFADALE----SL-PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp --HHHHHHHHHHHH----TT-TTSEEEE-SCSH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHH----hC-CCCEEEECCCCh-hHHHHHHH
Confidence 67788888876664 33 369999999996 88776654
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.32 E-value=0.0094 Score=54.16 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=59.0
Q ss_pred ceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHH
Q 012952 2 TYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRS 81 (452)
Q Consensus 2 tYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~ 81 (452)
..|.+|++-..+.... +...+...|++..|..|+. | +.|.++..+..+..||..
T Consensus 2 E~i~drLyf~~~~~~p----------------~~~~~~~yF~iD~~l~Y~~--F--------~~DFGPlnL~~lyrfc~~ 55 (141)
T PF14671_consen 2 EIIPDRLYFASLRNKP----------------KSTPNTHYFSIDDELVYEN--F--------YADFGPLNLAQLYRFCCK 55 (141)
T ss_dssp --SSSSEEEEE-SS--------------------BTTEEEEE-TTTS------S--------SS------HHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCC----------------CCCCCcEEEEeCCeEEEec--c--------cCcCCCccHHHHHHHHHH
Confidence 4567777777765311 1112355566643334442 2 478999999999999999
Q ss_pred HHHHHHhcC-CCeEEEEcCCCC----ChhHHHHHHHHHHhcCCCCHHHHHHHhhhc
Q 012952 82 AYSWLKEDI-LNVVVVHCKAGM----ARTGLMICSLLLFLKFFPTAEEAIDYYNQK 132 (452)
Q Consensus 82 v~~wL~~d~-~nvVvVHCkaGk----GRTGt~iaayLl~~~~~~t~eeAl~~f~~k 132 (452)
+++-|+... .+..+|||...- .-++.+++||++....+ ++++|+..+...
T Consensus 56 l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l~~~ 110 (141)
T PF14671_consen 56 LNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPLASI 110 (141)
T ss_dssp HHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHTTT
T ss_pred HHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhc
Confidence 999997633 367778887543 33789999999887776 899999988665
No 46
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.15 E-value=0.1 Score=48.07 Aligned_cols=85 Identities=18% Similarity=0.283 Sum_probs=54.0
Q ss_pred eecCCCC--CCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhH--HHHHHHHHHhcCCCCHHHHHHHhhhccccCC
Q 012952 62 FPFDDHN--CPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTG--LMICSLLLFLKFFPTAEEAIDYYNQKRCVDG 137 (452)
Q Consensus 62 ~p~pD~~--~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTG--t~iaayLl~~~~~~t~eeAl~~f~~kR~~~~ 137 (452)
...+|.+ .|....+..+++.++.|-+ ..+++|||.+|++||. .+++++-+...+ +..+.-+.++..+..
T Consensus 65 I~~~~~g~~ap~e~Hv~~i~DF~~~wp~---~apllIHC~aGISRStA~A~i~a~ala~~~--de~ela~~Lra~sp~-- 137 (172)
T COG5350 65 IAEPDDGWIAPGEAHVRAIIDFADEWPR---FAPLLIHCYAGISRSTAAALIAALALAPDM--DETELAERLRALSPY-- 137 (172)
T ss_pred ccCCCccccCCCHHHHHHHHHHHhcCcc---ccceeeeeccccccchHHHHHHHHhhcccc--ChHHHHHHHHhcCcc--
Confidence 3444443 6767777778888888854 3689999999999974 345555565555 566666666655521
Q ss_pred ceeecccHHHHHHHHHHHHh
Q 012952 138 KALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 138 kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
.+ -..|-+..+...|.
T Consensus 138 ---at-PN~RliaI~d~~l~ 153 (172)
T COG5350 138 ---AT-PNPRLIAIADAALG 153 (172)
T ss_pred ---cC-CChhHHHHHHHHHh
Confidence 11 23456666666664
No 47
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.18 E-value=0.82 Score=37.99 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMA 103 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkG 103 (452)
.+++.+.++. +...|+.+++...|...... ....+|+.+ +..+...+...+..+++..|||+|..| .
T Consensus 6 ~~~l~~~~~~---~~~~iiDvR~~~e~~~ghi~-gA~~ip~~~--------~~~~~~~~~~~~~~~~~~~ivvyC~~G-~ 72 (101)
T cd01518 6 PAEWNELLED---PEVVLLDVRNDYEYDIGHFK-GAVNPDVDT--------FREFPFWLDENLDLLKGKKVLMYCTGG-I 72 (101)
T ss_pred HHHHHHHHcC---CCEEEEEcCChhhhhcCEec-cccCCCccc--------HhHhHHHHHhhhhhcCCCEEEEECCCc-h
Confidence 4677777752 35789999644344432221 122233322 222222233333335567899999876 6
Q ss_pred hhHHHHHHHHHHhc
Q 012952 104 RTGLMICSLLLFLK 117 (452)
Q Consensus 104 RTGt~iaayLl~~~ 117 (452)
|+... +.+|...+
T Consensus 73 rs~~a-~~~L~~~G 85 (101)
T cd01518 73 RCEKA-SAYLKERG 85 (101)
T ss_pred hHHHH-HHHHHHhC
Confidence 77543 34454443
No 48
>PRK01415 hypothetical protein; Validated
Probab=92.09 E-value=0.81 Score=45.42 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred ecCceEEEcCCCCCCC--CC--CCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHH
Q 012952 4 ITENIIAMGFPAGDIS--SG--NHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFC 79 (452)
Q Consensus 4 IT~rIIam~~P~~~~e--~~--N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~ 79 (452)
|...|+.||.|..... .+ =..+++..+|+. ....|++++....|+...|. .--.|++..+.++.
T Consensus 92 ~k~eiV~~g~~~~~~~~~~g~~i~p~e~~~ll~~---~~~vvIDVRn~~E~~~Ghi~---------gAinip~~~f~e~~ 159 (247)
T PRK01415 92 LKKEIVAMNVDDLNVDLFKGEYIEPKDWDEFITK---QDVIVIDTRNDYEVEVGTFK---------SAINPNTKTFKQFP 159 (247)
T ss_pred eeceEEecCCCCCCccccCccccCHHHHHHHHhC---CCcEEEECCCHHHHhcCCcC---------CCCCCChHHHhhhH
Confidence 5577999998853322 12 346678888874 35788988643334332232 22234555555554
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 80 RSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 80 ~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
..+...+....+..|+++|.+| .|+ ..++.+|...+.
T Consensus 160 ~~~~~~~~~~k~k~Iv~yCtgG-iRs-~kAa~~L~~~Gf 196 (247)
T PRK01415 160 AWVQQNQELLKGKKIAMVCTGG-IRC-EKSTSLLKSIGY 196 (247)
T ss_pred HHHhhhhhhcCCCeEEEECCCC-hHH-HHHHHHHHHcCC
Confidence 4333333345567899999877 565 555666665554
No 49
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=88.49 E-value=2.4 Score=43.41 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=56.0
Q ss_pred ecCceEEEcCC--CCCCCCC---CCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHH
Q 012952 4 ITENIIAMGFP--AGDISSG---NHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASF 78 (452)
Q Consensus 4 IT~rIIam~~P--~~~~e~~---N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f 78 (452)
+...|+.||++ ..+.... -..+++...|+. +...|++++....|....+.+ ---+++..+.++
T Consensus 91 ~~~eLv~~G~d~~v~~~~~~~~~is~~el~~~l~~---~~~vlIDVR~~~E~~~GhI~G---------Ai~ip~~~~~~~ 158 (314)
T PRK00142 91 VRKEIVALGLDDDIDPLENVGTYLKPKEVNELLDD---PDVVFIDMRNDYEYEIGHFEN---------AIEPDIETFREF 158 (314)
T ss_pred eeeeeeecCCCCCCCccccCCcccCHHHHHHHhcC---CCeEEEECCCHHHHhcCcCCC---------CEeCCHHHhhhh
Confidence 56678899985 2222222 346777777754 357889886433343332321 112344444444
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 79 CRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 79 ~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
...+...+...++..|+|+|.+| .|+. .++.||...|.
T Consensus 159 ~~~l~~~~~~~kdk~IvvyC~~G-~Rs~-~aa~~L~~~Gf 196 (314)
T PRK00142 159 PPWVEENLDPLKDKKVVMYCTGG-IRCE-KASAWMKHEGF 196 (314)
T ss_pred HHHHHHhcCCCCcCeEEEECCCC-cHHH-HHHHHHHHcCC
Confidence 44443333334567899999876 5664 44566655443
No 50
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=88.30 E-value=3 Score=35.67 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcC-------CccCcccccCceEEeecCCC---------CCCCHHHHHHHHHHHHHHHH
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSE-------RLYDAALFQGKVACFPFDDH---------NCPPIQLIASFCRSAYSWLK 87 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sE-------r~yd~s~f~~~V~~~p~pD~---------~~P~l~~L~~f~~~v~~wL~ 87 (452)
.+++...|.. ....|+++++. ..|......+ ...+|+.+. ..|+.+.+.+++... .
T Consensus 4 ~~~l~~~l~~---~~~~ivDvR~~~~~~~~~~~~~~ghI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (122)
T cd01448 4 PDWLAEHLDD---PDVRILDARWYLPDRDGRKEYLEGHIPG-AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSL----G 75 (122)
T ss_pred HHHHHHHhCC---CCeEEEEeecCCCCCchhhHHhhCCCCC-CEEcChhhccccCCCCCCCCCCHHHHHHHHHHc----C
Confidence 4566666654 34789999754 3333222222 244554332 223444444443221 2
Q ss_pred hcCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 88 EDILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 88 ~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
.+++..|+|+|..| |+.+..++.+|...+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~ 105 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLRYFGH 105 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHHHcCC
Confidence 34567899999988 6666666655655553
No 51
>PRK05320 rhodanese superfamily protein; Provisional
Probab=87.16 E-value=3.1 Score=41.40 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred ecCceEEEcCCCCCCCCC----CCHHHHHHHHHhcCC---CeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHH
Q 012952 4 ITENIIAMGFPAGDISSG----NHMEEVIKFFETHHK---GKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIA 76 (452)
Q Consensus 4 IT~rIIam~~P~~~~e~~----N~i~dV~~fL~~~h~---~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~ 76 (452)
+-+-|++||.|......+ -..+++..+++..+. ....|++++....|....+. .---+|+..+.
T Consensus 90 ~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~---------GAiniPl~~f~ 160 (257)
T PRK05320 90 LKREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFD---------GALDYRIDKFT 160 (257)
T ss_pred hhhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccC---------CCEeCChhHhh
Confidence 345677788775432221 346677777766431 24788888643344433332 22224455555
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 77 SFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 77 ~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
++...+..++...++..|+++|.+| .|+ ..++.+|...|+
T Consensus 161 ~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs-~~Aa~~L~~~Gf 200 (257)
T PRK05320 161 EFPEALAAHRADLAGKTVVSFCTGG-IRC-EKAAIHMQEVGI 200 (257)
T ss_pred hhHHHHHhhhhhcCCCeEEEECCCC-HHH-HHHHHHHHHcCC
Confidence 5544444443333457899999987 455 445566655443
No 52
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=82.13 E-value=3.2 Score=43.25 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHH
Q 012952 90 ILNVVVVHCKAGMARTGLMICSLLL 114 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt~iaayLl 114 (452)
.+..|+|||..|+.||..+++.-.|
T Consensus 230 ~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp T--EEEEECTTSSSHHHHHHHHHHH
T ss_pred cCceEEEEcCCCCcccHHHHHHHHH
Confidence 4578999999999999887765443
No 53
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=81.52 E-value=5.9 Score=42.71 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=50.6
Q ss_pred EEEEEeCcCCccC--cccccCceEEeecCCCCCCC--H-HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHH
Q 012952 39 YKVYNLCSERLYD--AALFQGKVACFPFDDHNCPP--I-QLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLL 113 (452)
Q Consensus 39 y~V~NL~sEr~yd--~s~f~~~V~~~p~pD~~~P~--l-~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayL 113 (452)
-.|+++ ++..+. ...-...++++|.+.+..-. | ..|-++|..+..+|..+++..|+|+|..|+-.+.-++-+.|
T Consensus 320 ~~vI~~-s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaIL 398 (451)
T PF04179_consen 320 DCVINC-SESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAIL 398 (451)
T ss_pred CEEEEc-CCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHH
Confidence 356665 444332 22334468888888776553 3 34677777788888777778999999999988765555555
Q ss_pred HH
Q 012952 114 LF 115 (452)
Q Consensus 114 l~ 115 (452)
+.
T Consensus 399 c~ 400 (451)
T PF04179_consen 399 CK 400 (451)
T ss_pred HH
Confidence 43
No 54
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.33 E-value=3 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHH
Q 012952 91 LNVVVVHCKAGMARTGLMICSLL 113 (452)
Q Consensus 91 ~nvVvVHCkaGkGRTGt~iaayL 113 (452)
+..|+|||+.|+-||+-+++.-+
T Consensus 374 ~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 374 SRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred CceEEEEcCCCccchHHHHHHHH
Confidence 46899999999999998876543
No 55
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=80.59 E-value=5.4 Score=32.79 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCC----CCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDH----NCPPIQLIASFCRSAYSWLKEDILNVVVVHCK 99 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~----~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCk 99 (452)
.+++...| ....++|+++++...|......+ -.++||+.. .......+...+.... ...+....|||+|.
T Consensus 2 ~~el~~~l---~~~~~~liD~R~~~~~~~~hI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 2 PEELKEML---ENESVLLIDVRSPEEYERGHIPG-AVNIPFPSLDPDEPSLSEDKLDEFLKELG--KKIDKDKDIVFYCS 75 (113)
T ss_dssp HHHHHHHH---TTTTEEEEEESSHHHHHHSBETT-EEEEEGGGGSSSSSBCHHHHHHHHHHHHT--HGSTTTSEEEEEES
T ss_pred HHHHHhhh---hCCCeEEEEeCCHHHHHcCCCCC-Ccccccccccccccccccccccccccccc--ccccccccceeeee
Confidence 46777777 33579999997655566554443 477888543 2223333443333222 22244567999995
Q ss_pred CCCChhHHHHHH
Q 012952 100 AGMARTGLMICS 111 (452)
Q Consensus 100 aGkGRTGt~iaa 111 (452)
.| .|++.++++
T Consensus 76 ~~-~~~~~~~~~ 86 (113)
T PF00581_consen 76 SG-WRSGSAAAA 86 (113)
T ss_dssp SS-CHHHHHHHH
T ss_pred cc-cccchhHHH
Confidence 44 445544444
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=76.51 E-value=8.9 Score=39.13 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred ecCceEEEcCCCCCCCC---C--CCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHH
Q 012952 4 ITENIIAMGFPAGDISS---G--NHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASF 78 (452)
Q Consensus 4 IT~rIIam~~P~~~~e~---~--N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f 78 (452)
+-+.|++||.|.+-.+. + =..+++-.+|... ...|++.+..-.|+.-.|.+ ---|+.+.+.+|
T Consensus 92 ~kkEIV~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~---~~vviDtRN~YE~~iG~F~g---------Av~p~~~tFref 159 (308)
T COG1054 92 LKKEIVALGVEDDVDPLENVGTYLSPKDWNELLSDP---DVVVIDTRNDYEVAIGHFEG---------AVEPDIETFREF 159 (308)
T ss_pred ehhhheecCCCCCcCccccccCccCHHHHHHHhcCC---CeEEEEcCcceeEeeeeecC---------ccCCChhhhhhh
Confidence 34689999999621111 1 2345666666544 47777764333344444432 335788888899
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 79 CRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 79 ~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
...+.+++....+..|++.|.+|+= . --.++||+..|+
T Consensus 160 P~~v~~~~~~~~~KkVvmyCTGGIR-C-EKas~~m~~~GF 197 (308)
T COG1054 160 PAWVEENLDLLKDKKVVMYCTGGIR-C-EKASAWMKENGF 197 (308)
T ss_pred HHHHHHHHHhccCCcEEEEcCCcee-e-hhhHHHHHHhcc
Confidence 8888888877777899999999863 1 345677776665
No 57
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=76.36 E-value=7.6 Score=32.61 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
..+++...++.. ....|+++++...|......+ ... .| +..+... + .++..+++..|+|+|..|.
T Consensus 13 ~~~~l~~~~~~~--~~~~liDvR~~~e~~~ghIpg-ain-------ip-~~~l~~~---~-~~l~~~~~~~ivv~C~~G~ 77 (109)
T cd01533 13 SADELAALQARG--APLVVLDGRRFDEYRKMTIPG-SVS-------CP-GAELVLR---V-GELAPDPRTPIVVNCAGRT 77 (109)
T ss_pred CHHHHHHHHhcC--CCcEEEeCCCHHHHhcCcCCC-cee-------CC-HHHHHHH---H-HhcCCCCCCeEEEECCCCc
Confidence 467888777543 246788886433344321111 112 22 3333322 2 2232344578999998874
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
|+. .++..|...+
T Consensus 78 -rs~-~a~~~L~~~G 90 (109)
T cd01533 78 -RSI-IGAQSLINAG 90 (109)
T ss_pred -hHH-HHHHHHHHCC
Confidence 663 3444454444
No 58
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.14 E-value=13 Score=33.13 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=49.5
Q ss_pred ceecCceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCC--ccCcc---------cccCceEEeecCCCCCC
Q 012952 2 TYITENIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSER--LYDAA---------LFQGKVACFPFDDHNCP 70 (452)
Q Consensus 2 tYIT~rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr--~yd~s---------~f~~~V~~~p~pD~~~P 70 (452)
..|.+++-+-+.| +++|+..+-.. |--.|+|.+... .-.+. .-...+.+.|.-..+ +
T Consensus 4 ~~I~d~lsVsgQi--------~~~D~~~iaa~---GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-i 71 (130)
T COG3453 4 RRINDRLSVSGQI--------SPADIASIAAL---GFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-I 71 (130)
T ss_pred eecccceeecCCC--------CHHHHHHHHHh---ccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-C
Confidence 4688899888888 35677665443 333566664221 11111 011123444443222 2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHH
Q 012952 71 PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLL 113 (452)
Q Consensus 71 ~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayL 113 (452)
+-+.+..|-+.+.+ -+++|+.||+.| +|+-++-..-.
T Consensus 72 T~~dV~~f~~Al~e-----aegPVlayCrsG-tRs~~ly~~~~ 108 (130)
T COG3453 72 TEADVEAFQRALDE-----AEGPVLAYCRSG-TRSLNLYGLGE 108 (130)
T ss_pred CHHHHHHHHHHHHH-----hCCCEEeeecCC-chHHHHHHHHH
Confidence 34455555554542 258999999987 56544433333
No 59
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=75.72 E-value=12 Score=30.66 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEcCCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKE-DILNVVVVHCKAGM 102 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~-d~~nvVvVHCkaGk 102 (452)
.+++...|+.. ....|++++....|......+ -..+|+.+. ...+.......+.. +++..|+|+|..|
T Consensus 3 ~~el~~~l~~~--~~~~liDvR~~~e~~~ghi~g-a~~ip~~~~-------~~~~~~~~~~~~~~~~~~~~ivv~C~~G- 71 (100)
T cd01523 3 PEDLYARLLAG--QPLFILDVRNESDYERWKIDG-ENNTPYFDP-------YFDFLEIEEDILDQLPDDQEVTVICAKE- 71 (100)
T ss_pred HHHHHHHHHcC--CCcEEEEeCCHHHHhhcccCC-Ccccccccc-------hHHHHHhhHHHHhhCCCCCeEEEEcCCC-
Confidence 46777777653 357889997544454322221 122333211 11111111111111 3457899999987
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
+|+. .++..|...+
T Consensus 72 ~rs~-~aa~~L~~~G 85 (100)
T cd01523 72 GSSQ-FVAELLAERG 85 (100)
T ss_pred CcHH-HHHHHHHHcC
Confidence 4664 3444454433
No 60
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=74.48 E-value=14 Score=31.78 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccC-cccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYD-AALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd-~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
.+++...|++. .++.|++++++..|. ..... .-..+|+.+...+... ..+...+...+ +++..|+|+|..|
T Consensus 3 ~~el~~~l~~~--~~~~vIDvR~~~e~~~~ghIp-gA~~ip~~~~~~~~~~--~~~~~~l~~~~--~~~~~ivv~C~~G- 74 (117)
T cd01522 3 PAEAWALLQAD--PQAVLVDVRTEAEWKFVGGVP-DAVHVAWQVYPDMEIN--PNFLAELEEKV--GKDRPVLLLCRSG- 74 (117)
T ss_pred HHHHHHHHHhC--CCeEEEECCCHHHHhcccCCC-CceecchhhccccccC--HHHHHHHHhhC--CCCCeEEEEcCCC-
Confidence 46788888773 358899997555565 33232 2345555432211111 11222222222 4567899999887
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
.|+.. ++.+|...+
T Consensus 75 ~rs~~-aa~~L~~~G 88 (117)
T cd01522 75 NRSIA-AAEAAAQAG 88 (117)
T ss_pred ccHHH-HHHHHHHCC
Confidence 45544 344454444
No 61
>PLN02160 thiosulfate sulfurtransferase
Probab=74.15 E-value=6.7 Score=34.99 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCc-eEEeecCCCCCCCHHHH--HHHHHHHHHHHHhcCCCeEEEEcC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGK-VACFPFDDHNCPPIQLI--ASFCRSAYSWLKEDILNVVVVHCK 99 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~-V~~~p~pD~~~P~l~~L--~~f~~~v~~wL~~d~~nvVvVHCk 99 (452)
..+++...++.. ..|++++....|......+. +..+||.++. |. ..+ ..+...+...+ +++..|+|||.
T Consensus 18 ~~~e~~~~~~~~----~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~-~~-~~l~~~~~~~~~~~~~--~~~~~IivyC~ 89 (136)
T PLN02160 18 DVSQAKTLLQSG----HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNT-PQ-GRVKNQEFLEQVSSLL--NPADDILVGCQ 89 (136)
T ss_pred CHHHHHHHHhCC----CEEEECCCHHHHhcCCCCCcceecccchhcC-cc-cccCCHHHHHHHHhcc--CCCCcEEEECC
Confidence 356777777542 36888865445654333322 2456664332 10 111 12222222222 34578999999
Q ss_pred CCCChhHHHHHHHHHHhc
Q 012952 100 AGMARTGLMICSLLLFLK 117 (452)
Q Consensus 100 aGkGRTGt~iaayLl~~~ 117 (452)
.| .|+... +..|...+
T Consensus 90 sG-~RS~~A-a~~L~~~G 105 (136)
T PLN02160 90 SG-ARSLKA-TTELVAAG 105 (136)
T ss_pred Cc-HHHHHH-HHHHHHcC
Confidence 77 677644 33343333
No 62
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=71.51 E-value=13 Score=30.73 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCC---CCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDH---NCPPIQLIASFCRSAYSWLKEDILNVVVVHCK 99 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~---~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCk 99 (452)
+.+++...|+. .+...|++++....|...... ....+|+.+. ..++.+.+..+ ..++...++..|||+|.
T Consensus 2 ~~~~~~~~l~~--~~~~~iiDvR~~~e~~~ghIp-gA~~ip~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ivv~c~ 74 (106)
T cd01519 2 SFEEVKNLPNP--HPNKVLIDVREPEELKTGKIP-GAINIPLSSLPDALALSEEEFEKK----YGFPKPSKDKELIFYCK 74 (106)
T ss_pred cHHHHHHhcCC--CCCEEEEECCCHHHHhcCcCC-CcEEechHHhhhhhCCCHHHHHHH----hcccCCCCCCeEEEECC
Confidence 35677776641 235789999754445433222 2344454331 11122222221 11222234568999999
Q ss_pred CCCChhHHHHHHHHHHhc
Q 012952 100 AGMARTGLMICSLLLFLK 117 (452)
Q Consensus 100 aGkGRTGt~iaayLl~~~ 117 (452)
.|. |+ ..++.+|...+
T Consensus 75 ~g~-~s-~~~~~~l~~~G 90 (106)
T cd01519 75 AGV-RS-KAAAELARSLG 90 (106)
T ss_pred CcH-HH-HHHHHHHHHcC
Confidence 874 54 33344444433
No 63
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=67.75 E-value=40 Score=31.00 Aligned_cols=19 Identities=21% Similarity=0.009 Sum_probs=14.9
Q ss_pred cCCCeEEEEcCCCCChhHH
Q 012952 89 DILNVVVVHCKAGMARTGL 107 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt 107 (452)
+++..|||.|..|..|+..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~ 132 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN 132 (162)
T ss_pred CCCCEEEEEECCCCHHHHH
Confidence 4568999999987767765
No 64
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=66.32 E-value=14 Score=30.44 Aligned_cols=85 Identities=12% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNC--PPIQLIASFCRSAYSWLKEDILNVVVVHCKAG 101 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~--P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaG 101 (452)
.+++...|+.. ..++.|+.++....|...... .-..+||.+... +.+..+. . ..|+....+.+|||+|..|
T Consensus 3 ~~~l~~~l~~~-~~~~~liDvR~~~e~~~ghIp-gA~~ip~~~~~~~~~~~~~~~----~-~~~~~~~~~~~vv~~c~~g 75 (105)
T cd01525 3 VYDVIRLLDNS-PAKLAAVDIRSSPDFRRGHIE-GSINIPFSSVFLKEGELEQLP----T-VPRLENYKGKIIVIVSHSH 75 (105)
T ss_pred HHHHHHHHhCC-CCCeEEEECCCHHHHhCCccC-CCEeCCHHHhccccccccccc----c-hHHHHhhcCCeEEEEeCCC
Confidence 46777777653 236889999644345432222 224556543211 1111111 1 1233333357899999887
Q ss_pred CChhHHHHHHHHHHhc
Q 012952 102 MARTGLMICSLLLFLK 117 (452)
Q Consensus 102 kGRTGt~iaayLl~~~ 117 (452)
. |++.++ ..|...+
T Consensus 76 ~-~s~~~a-~~L~~~G 89 (105)
T cd01525 76 K-HAALFA-AFLVKCG 89 (105)
T ss_pred c-cHHHHH-HHHHHcC
Confidence 5 554433 3444333
No 65
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=62.30 E-value=22 Score=28.91 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHH
Q 012952 28 IKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGL 107 (452)
Q Consensus 28 ~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt 107 (452)
...|+. +...+.|++++++..|......+ -..+|+.+.. +.... +..+-...++..|+|+|..| +|++.
T Consensus 3 ~~~l~~-~~~~~~iiDvR~~~~~~~~hIpg-A~~ip~~~~~-~~~~~-------~~~~~~~~~~~~ivv~c~~g-~~s~~ 71 (96)
T cd01529 3 ADWLGE-HEPGTALLDVRAEDEYAAGHLPG-KRSIPGAALV-LRSQE-------LQALEAPGRATRYVLTCDGS-LLARF 71 (96)
T ss_pred hHHHhc-CCCCeEEEeCCCHHHHcCCCCCC-cEeCCHHHhc-CCHHH-------HHHhhcCCCCCCEEEEeCCh-HHHHH
Confidence 345555 34567899997543454322221 2333432110 11111 11111124457899999865 56654
Q ss_pred HHHHHHHHhc
Q 012952 108 MICSLLLFLK 117 (452)
Q Consensus 108 ~iaayLl~~~ 117 (452)
+ +.+|...+
T Consensus 72 ~-~~~l~~~G 80 (96)
T cd01529 72 A-AQELLALG 80 (96)
T ss_pred H-HHHHHHcC
Confidence 4 44454444
No 66
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=60.73 E-value=46 Score=28.81 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcC---CCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 012952 24 MEEVIKFFETHH---KGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKA 100 (452)
Q Consensus 24 i~dV~~fL~~~h---~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCka 100 (452)
.+++...|+..- ...+.|++++....|...... ...++|+ .+.+...+.....-+..+++.+|+|||..
T Consensus 6 ~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~-gA~~ip~-------~~~l~~~~~~~~~~~~~~~~~~vv~yC~~ 77 (121)
T cd01530 6 PETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIK-GAVNLST-------KDELEEFFLDKPGVASKKKRRVLIFHCEF 77 (121)
T ss_pred HHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCC-CCEeCCc-------HHHHHHHHHHhhcccccCCCCEEEEECCC
Confidence 467777776531 246889998643334332211 1222332 11222211110000112456789999973
Q ss_pred CCChhHHHHHHHHHH
Q 012952 101 GMARTGLMICSLLLF 115 (452)
Q Consensus 101 GkGRTGt~iaayLl~ 115 (452)
+-.|+.. +|.+|..
T Consensus 78 sg~rs~~-aa~~L~~ 91 (121)
T cd01530 78 SSKRGPR-MARHLRN 91 (121)
T ss_pred ccccHHH-HHHHHHH
Confidence 3356544 4444543
No 67
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=56.89 E-value=37 Score=28.66 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcC---CCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 012952 24 MEEVIKFFETHH---KGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKA 100 (452)
Q Consensus 24 i~dV~~fL~~~h---~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCka 100 (452)
.+++...++... .....|++++.. .|....+. ....+|+ ..+...+..+...+......+|+|||..
T Consensus 6 ~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghip-gAi~ip~--------~~~~~~~~~~~~~~~~~~~~~iv~~C~~ 75 (113)
T cd01443 6 PEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIK-GSINLPA--------QSCYQTLPQVYALFSLAGVKLAIFYCGS 75 (113)
T ss_pred HHHHHHHHhCCccccCCcEEEEECCch-hcCCCccc-Cceecch--------hHHHHHHHHHHHHhhhcCCCEEEEECCC
Confidence 567888876530 135788888533 33322111 1222332 2222222222222333334689999997
Q ss_pred CCChhHHH
Q 012952 101 GMARTGLM 108 (452)
Q Consensus 101 GkGRTGt~ 108 (452)
|-.|+..+
T Consensus 76 ~g~rs~~a 83 (113)
T cd01443 76 SQGRGPRA 83 (113)
T ss_pred CCcccHHH
Confidence 65666543
No 68
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=55.57 E-value=1.2e+02 Score=25.54 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
..+++...+.... +...|+++... .|...... ...++|+ ..+......+..-+..+.+..+||||..+-
T Consensus 5 s~~~l~~~~~~~~-~~~~iiDvR~~-e~~~~hi~-gA~~ip~--------~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~ 73 (113)
T cd01531 5 SPAQLKGWIRNGR-PPFQVVDVRDE-DYAGGHIK-GSWHYPS--------TRFKAQLNQLVQLLSGSKKDTVVFHCALSQ 73 (113)
T ss_pred CHHHHHHHHHcCC-CCEEEEEcCCc-ccCCCcCC-CCEecCH--------HHHhhCHHHHHHHHhcCCCCeEEEEeecCC
Confidence 3567777775532 34678999644 44432221 1122222 222222222211111134578999998444
Q ss_pred ChhHH
Q 012952 103 ARTGL 107 (452)
Q Consensus 103 GRTGt 107 (452)
.|+..
T Consensus 74 ~r~~~ 78 (113)
T cd01531 74 VRGPS 78 (113)
T ss_pred cchHH
Confidence 55544
No 69
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=54.55 E-value=64 Score=27.99 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDD 66 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD 66 (452)
.+++...++. ...|+.++....|...... ...++||.+
T Consensus 3 ~~el~~~l~~----~~~iiDvR~~~e~~~ghIp-gAinip~~~ 40 (128)
T cd01520 3 AEDLLALRKA----DGPLIDVRSPKEFFEGHLP-GAINLPLLD 40 (128)
T ss_pred HHHHHHHHhc----CCEEEECCCHHHhccCcCC-CcEEccCCC
Confidence 4567777652 3578998654445543332 235677753
No 70
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=51.40 E-value=69 Score=26.22 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMA 103 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkG 103 (452)
.+++...++..+. ...|+++++...|+.....+ ...+| +..+..+...+..+ +++..++|+|..| .
T Consensus 4 ~~~l~~~~~~~~~-~~~iiDvR~~~e~~~~hI~g-a~~ip--------~~~~~~~~~~~~~~---~~~~~vv~~c~~g-~ 69 (101)
T cd01528 4 VAELAEWLADERE-EPVLIDVREPEELEIAFLPG-FLHLP--------MSEIPERSKELDSD---NPDKDIVVLCHHG-G 69 (101)
T ss_pred HHHHHHHHhcCCC-CCEEEECCCHHHHhcCcCCC-CEecC--------HHHHHHHHHHhccc---CCCCeEEEEeCCC-c
Confidence 4567777765422 35788885433343322221 12223 33333333222211 3457899999886 5
Q ss_pred hhHHHHHHHHHHhc
Q 012952 104 RTGLMICSLLLFLK 117 (452)
Q Consensus 104 RTGt~iaayLl~~~ 117 (452)
|+. .++.+|...+
T Consensus 70 rs~-~~~~~l~~~G 82 (101)
T cd01528 70 RSM-QVAQWLLRQG 82 (101)
T ss_pred hHH-HHHHHHHHcC
Confidence 653 3344454443
No 71
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.39 E-value=66 Score=33.50 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCC--------------CeEEEEcC-CCCChhHHHHHHHHHHhcCCCCHHHHHHHhh
Q 012952 66 DHNCPPIQLIASFCRSAYSWLKEDIL--------------NVVVVHCK-AGMARTGLMICSLLLFLKFFPTAEEAIDYYN 130 (452)
Q Consensus 66 D~~~P~l~~L~~f~~~v~~wL~~d~~--------------nvVvVHCk-aGkGRTGt~iaayLl~~~~~~t~eeAl~~f~ 130 (452)
.|-+|..+.+...+++..+||..... ..|+||=- .|-|||.-++.-++|.+-.+
T Consensus 328 ~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGy----------- 396 (472)
T KOG3824|consen 328 RHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGY----------- 396 (472)
T ss_pred CCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCC-----------
Confidence 45567788888888999999975321 24888875 89999987776555443333
Q ss_pred hccccCCceeecccHHHHHHHHHHHHh
Q 012952 131 QKRCVDGKALVLPSQIRYVKYFERILT 157 (452)
Q Consensus 131 ~kR~~~~kgv~~PSQ~RYl~Yf~~lL~ 157 (452)
+.|.+|.|.|--||..--+.
T Consensus 397 -------PPviipkeqRs~YYh~L~~A 416 (472)
T KOG3824|consen 397 -------PPVIIPKEQRSEYYHSLHVA 416 (472)
T ss_pred -------CCeeecHHHhhhHHHHHhhc
Confidence 45788888887766544433
No 72
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=50.13 E-value=42 Score=26.34 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=34.8
Q ss_pred CeEEEEEeCcCCccCcccccCceEEeecCCCCCC--CHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChhHHHHHHHHH
Q 012952 37 GKYKVYNLCSERLYDAALFQGKVACFPFDDHNCP--PIQLIASFCRSAYSWLKEDILNVVVVHCKAGMARTGLMICSLLL 114 (452)
Q Consensus 37 ~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P--~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkGRTGt~iaayLl 114 (452)
..+.|+++++...|......+ ..++|+...... ..... ............++..|+|+|..| .|+ ..++.+|.
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~g-a~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~c~~g-~~a-~~~~~~l~ 77 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPG-AVNIPLSELLDRRGELDIL--EFEELLKRLGLDKDKPVVVYCRSG-NRS-AKAAWLLR 77 (100)
T ss_pred CCEEEEECCCHHHhccCCCCC-ceeCCHHHhccCCCCcCHH--HHHHHHHHcCCCCCCeEEEEeCCC-cHH-HHHHHHHH
Confidence 357888886544455433322 234454332111 11111 112222223334567899999543 344 34444444
Q ss_pred Hhc
Q 012952 115 FLK 117 (452)
Q Consensus 115 ~~~ 117 (452)
..+
T Consensus 78 ~~G 80 (100)
T smart00450 78 ELG 80 (100)
T ss_pred HcC
Confidence 333
No 73
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=48.64 E-value=38 Score=37.60 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhHHHHHHH
Q 012952 92 NVVVVHCKAGMARTGLMICSL 112 (452)
Q Consensus 92 nvVvVHCkaGkGRTGt~iaay 112 (452)
-.|||||..|+-||..+++.-
T Consensus 345 ~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 345 ASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred CeEEEEccCCcchhHHHHHHH
Confidence 579999999999998877654
No 74
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=47.75 E-value=73 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=15.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 90 ILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
++..++|+|..| .| ...++.+|...+
T Consensus 55 ~~~~ivv~c~~g-~~-s~~a~~~l~~~G 80 (96)
T cd01444 55 RDRPVVVYCYHG-NS-SAQLAQALREAG 80 (96)
T ss_pred CCCCEEEEeCCC-Ch-HHHHHHHHHHcC
Confidence 457899999944 33 344444444444
No 75
>PRK07411 hypothetical protein; Validated
Probab=41.93 E-value=60 Score=34.24 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
..+++.+.++.. ...+.|++++....|....+.+ ...+||.+..... .+..+..+ .++..|+|||..|.
T Consensus 285 s~~el~~~l~~~-~~~~vlIDVR~~~E~~~ghIpG-AiniP~~~l~~~~------~~~~l~~l---~~d~~IVvyC~~G~ 353 (390)
T PRK07411 285 TVTELKALLDSG-ADDFVLIDVRNPNEYEIARIPG-SVLVPLPDIENGP------GVEKVKEL---LNGHRLIAHCKMGG 353 (390)
T ss_pred CHHHHHHHHhCC-CCCeEEEECCCHHHhccCcCCC-CEEccHHHhhccc------chHHHhhc---CCCCeEEEECCCCH
Confidence 456777777543 1257789986444455433332 2345654432110 01222222 23568999998764
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
|+.. ++.+|...+
T Consensus 354 -RS~~-aa~~L~~~G 366 (390)
T PRK07411 354 -RSAK-ALGILKEAG 366 (390)
T ss_pred -HHHH-HHHHHHHcC
Confidence 7644 444444443
No 76
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=41.55 E-value=1.3e+02 Score=25.73 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHH-----HHHHHhcCCCeEEEE
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSA-----YSWLKEDILNVVVVH 97 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v-----~~wL~~d~~nvVvVH 97 (452)
..+++...+++. ....|++++....|......+ ...+|+ ..+......+ ..|. .+++..++|+
T Consensus 11 s~~el~~~~~~~--~~~~ivDvR~~~e~~~~hIpg-ai~ip~--------~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~ 78 (122)
T cd01526 11 SVKDYKNILQAG--KKHVLLDVRPKVHFEICRLPE-AINIPL--------SELLSKAAELKSLQELPLD-NDKDSPIYVV 78 (122)
T ss_pred CHHHHHHHHhCC--CCeEEEEcCCHHHhhcccCCC-CeEccH--------HHHhhhhhhhhhhhhcccc-cCCCCcEEEE
Confidence 356777766542 357899997544454322221 122332 2222111111 1121 2446789999
Q ss_pred cCCCCChhHHHHHHHHHHhcC
Q 012952 98 CKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 98 CkaGkGRTGt~iaayLl~~~~ 118 (452)
|..| .|+. .++.+|...+.
T Consensus 79 C~~G-~rs~-~aa~~L~~~G~ 97 (122)
T cd01526 79 CRRG-NDSQ-TAVRKLKELGL 97 (122)
T ss_pred CCCC-CcHH-HHHHHHHHcCC
Confidence 9887 4654 44445544443
No 77
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=41.49 E-value=62 Score=27.11 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.9
Q ss_pred CCCeEEEEcCCCCChhHH
Q 012952 90 ILNVVVVHCKAGMARTGL 107 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt 107 (452)
++..|||+|..| .|+..
T Consensus 77 ~~~~iv~yc~~g-~~s~~ 93 (118)
T cd01449 77 PDKPVIVYCGSG-VTACV 93 (118)
T ss_pred CCCCEEEECCcH-HHHHH
Confidence 456899999876 35543
No 78
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.06 E-value=1.3e+02 Score=24.96 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=36.9
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
..+++...++.. ...|++++....|......+ ..++| +..+..++ .++ +.+..++|+|..|.
T Consensus 8 s~~el~~~l~~~---~~~ivDvR~~~e~~~ghi~g-A~~ip--------~~~l~~~~----~~~--~~~~~ivv~c~~g~ 69 (108)
T PRK00162 8 NVEQAHQKLQEG---GAVLVDIRDPQSFAMGHAPG-AFHLT--------NDSLGAFM----RQA--DFDTPVMVMCYHGN 69 (108)
T ss_pred CHHHHHHHHHcC---CCEEEEcCCHHHHhcCCCCC-CeECC--------HHHHHHHH----Hhc--CCCCCEEEEeCCCC
Confidence 356777777543 36788886433343322111 12222 23333222 222 34578999998774
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
|+ ..++..|...+
T Consensus 70 -~s-~~a~~~L~~~G 82 (108)
T PRK00162 70 -SS-QGAAQYLLQQG 82 (108)
T ss_pred -CH-HHHHHHHHHCC
Confidence 43 33444444433
No 79
>PF15274 MLIP: Muscular LMNA-interacting protein
Probab=37.29 E-value=53 Score=32.53 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=14.0
Q ss_pred cCCCccccccchhhhhhhccCC
Q 012952 344 SDSDGEEADTSKSRQADAASGG 365 (452)
Q Consensus 344 sd~~~~~~~~~~~~~~~~~~~~ 365 (452)
=||||||++.++. -+|-.++|
T Consensus 17 vDSegEdEat~rk-~~q~p~~G 37 (256)
T PF15274_consen 17 VDSEGEDEATSRK-GEQGPPGG 37 (256)
T ss_pred ecCCCcccccccc-cccCCCCC
Confidence 4999999877764 33555544
No 80
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=36.61 E-value=99 Score=30.74 Aligned_cols=21 Identities=0% Similarity=0.049 Sum_probs=13.6
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCc
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCS 46 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~s 46 (452)
..++|...|+. +.+.|++.+.
T Consensus 8 s~~~l~~~l~~---~~~~iiD~R~ 28 (281)
T PRK11493 8 AADWLAEHIDD---PEIQIIDARM 28 (281)
T ss_pred CHHHHHHhcCC---CCeEEEEeeC
Confidence 35666666643 3588999863
No 81
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=36.43 E-value=53 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=16.2
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 89 DILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
.++..|+|+|..| . .+..++.+|...+
T Consensus 48 ~~~~~vv~~c~~~-~-~a~~~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSG-N-RSARAAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCC-c-hHHHHHHHHHHhC
Confidence 4557899999885 2 3344444444433
No 82
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=36.08 E-value=1.4e+02 Score=30.54 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCccc-------ccCc---eEEeecC-----CCCCCCHHHHHHHHHHHHHHHH
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAAL-------FQGK---VACFPFD-----DHNCPPIQLIASFCRSAYSWLK 87 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~-------f~~~---V~~~p~p-----D~~~P~l~~L~~f~~~v~~wL~ 87 (452)
..++|...++. +.+.|++.++...|.... ..++ -.++||. ++..++.+.|..++... .
T Consensus 193 ~~~~v~~~~~~---~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~----g 265 (320)
T PLN02723 193 TLEQVKKNIED---KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQE----G 265 (320)
T ss_pred cHHHHHHhhcC---CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhc----C
Confidence 35677666643 247788886544453321 1122 2456663 22344555555544322 1
Q ss_pred hcCCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 88 EDILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 88 ~d~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
-.++..|+++|..| .++.++...|...|
T Consensus 266 i~~~~~iv~yC~sG--~~A~~~~~~L~~~G 293 (320)
T PLN02723 266 ISLDSPIVASCGTG--VTACILALGLHRLG 293 (320)
T ss_pred CCCCCCEEEECCcH--HHHHHHHHHHHHcC
Confidence 23457899999764 34444443343333
No 83
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=35.11 E-value=2.4e+02 Score=22.72 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGMA 103 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGkG 103 (452)
.+++.+.++... ..+.|+++++...|......+ -.++|+ ..+.. .+. ++....+..|+++|..|.
T Consensus 3 ~~~l~~~~~~~~-~~~~liDvR~~~e~~~ghipg-a~~ip~--------~~l~~---~~~-~~~~~~~~~iv~~c~~G~- 67 (95)
T cd01534 3 AAELARWAAEGD-RTVYRFDVRTPEEYEAGHLPG-FRHTPG--------GQLVQ---ETD-HFAPVRGARIVLADDDGV- 67 (95)
T ss_pred HHHHHHHHHcCC-CCeEEEECCCHHHHHhCCCCC-cEeCCH--------HHHHH---HHH-HhcccCCCeEEEECCCCC-
Confidence 467777776542 257888986444454322221 122222 22221 111 222223568999998763
Q ss_pred hhHHHHHHHHHHh
Q 012952 104 RTGLMICSLLLFL 116 (452)
Q Consensus 104 RTGt~iaayLl~~ 116 (452)
|+. ..+.+|...
T Consensus 68 rs~-~aa~~L~~~ 79 (95)
T cd01534 68 RAD-MTASWLAQM 79 (95)
T ss_pred hHH-HHHHHHHHc
Confidence 543 344444433
No 84
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=32.73 E-value=99 Score=32.46 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCcccccC--ceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAALFQG--KVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAG 101 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~--~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaG 101 (452)
.+++.+++++. ...|++++....|......+ ...++| +..|.+....+..+ ...++.+|+|||..|
T Consensus 275 ~~el~~~l~~~---~~~lIDVR~~~E~~~ghI~~~~gAinIP--------l~~l~~~~~~~~~l-~~~~~~~Ivv~C~sG 342 (370)
T PRK05600 275 TTSLIDATLNG---SATLLDVREPHEVLLKDLPEGGASLKLP--------LSAITDDADILHAL-SPIDGDNVVVYCASG 342 (370)
T ss_pred HHHHHHHHhcC---CeEEEECCCHHHhhhccCCCCCccEeCc--------HHHhhcchhhhhhc-cccCCCcEEEECCCC
Confidence 46677777553 35788886444454322211 122222 33332211111222 222345899999988
Q ss_pred CChhHHHHHHHHHHhc
Q 012952 102 MARTGLMICSLLLFLK 117 (452)
Q Consensus 102 kGRTGt~iaayLl~~~ 117 (452)
.|+.. ++.+|...+
T Consensus 343 -~RS~~-Aa~~L~~~G 356 (370)
T PRK05600 343 -IRSAD-FIEKYSHLG 356 (370)
T ss_pred -hhHHH-HHHHHHHcC
Confidence 56654 455555444
No 85
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=31.23 E-value=1.9e+02 Score=32.57 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCcCCccCccc----ccCce---EEeecCC-----CCCCCHHHHHHHHHHHHHHHHhcCC
Q 012952 24 MEEVIKFFETHHKGKYKVYNLCSERLYDAAL----FQGKV---ACFPFDD-----HNCPPIQLIASFCRSAYSWLKEDIL 91 (452)
Q Consensus 24 i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~----f~~~V---~~~p~pD-----~~~P~l~~L~~f~~~v~~wL~~d~~ 91 (452)
.++|...++. ..+.|++.++...|.... -.+++ ..+||.+ +..++.+.|.+++... .-+++
T Consensus 151 ~e~v~~~l~~---~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~----Gi~~~ 223 (610)
T PRK09629 151 REYLQSRLGA---ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDL----GITPD 223 (610)
T ss_pred HHHHHHhhCC---CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHc----CCCCC
Confidence 4566555532 357788886544453211 11222 5567642 2344555554443221 12456
Q ss_pred CeEEEEcCCCCChhHHH
Q 012952 92 NVVVVHCKAGMARTGLM 108 (452)
Q Consensus 92 nvVvVHCkaGkGRTGt~ 108 (452)
..|+++|..|. |++.+
T Consensus 224 ~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 224 KEVITHCQTHH-RSGFT 239 (610)
T ss_pred CCEEEECCCCh-HHHHH
Confidence 78999998874 55543
No 86
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=29.19 E-value=64 Score=26.36 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=19.0
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcC
Q 012952 89 DILNVVVVHCKAGMARTGLMICSLLLFLKF 118 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt~iaayLl~~~~ 118 (452)
+.+..++|+|..| .|+ ..++.+|...++
T Consensus 59 ~~~~~ivv~C~~G-~rS-~~aa~~L~~~G~ 86 (110)
T COG0607 59 PDDDPIVVYCASG-VRS-AAAAAALKLAGF 86 (110)
T ss_pred CCCCeEEEEeCCC-CCh-HHHHHHHHHcCC
Confidence 4468999999987 445 455566666664
No 87
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=28.45 E-value=57 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=16.2
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 89 DILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
+.+..++|+|..| .|+... +..|...+
T Consensus 58 ~~~~~IVlyC~~G-~rS~~a-a~~L~~~G 84 (104)
T PRK10287 58 DKNDTVKLYCNAG-RQSGQA-KEILSEMG 84 (104)
T ss_pred CCCCeEEEEeCCC-hHHHHH-HHHHHHcC
Confidence 4456799999876 555544 33343333
No 88
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=28.43 E-value=2.6e+02 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=14.9
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHh
Q 012952 89 DILNVVVVHCKAGMARTGLMICSLLLFL 116 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt~iaayLl~~ 116 (452)
+++..||++|..| .| +..++..|...
T Consensus 49 ~~~~~vvl~c~~g-~~-a~~~a~~L~~~ 74 (90)
T cd01524 49 PKDKEIIVYCAVG-LR-GYIAARILTQN 74 (90)
T ss_pred CCCCcEEEEcCCC-hh-HHHHHHHHHHC
Confidence 3456899999875 23 33444444433
No 89
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=28.36 E-value=4e+02 Score=23.57 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcC-CCeEEEEEeC
Q 012952 24 MEEVIKFFETHH-KGKYKVYNLC 45 (452)
Q Consensus 24 i~dV~~fL~~~h-~~~y~V~NL~ 45 (452)
.++|...|+... ..+..|+..+
T Consensus 3 ~e~l~~~l~~~~~~~~~~iiD~r 25 (138)
T cd01445 3 TEQLAENLEAGKVGKGFQLLDAR 25 (138)
T ss_pred HHHHHHHhhccccCCCeEEEEcc
Confidence 467777775321 2357888875
No 90
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=27.19 E-value=91 Score=25.22 Aligned_cols=28 Identities=18% Similarity=-0.046 Sum_probs=17.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 90 ILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
++.+|||.|..|...+...++..|...+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 3568999999875444445554554443
No 91
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=26.50 E-value=2.1e+02 Score=25.71 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=16.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 90 ILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 90 ~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
++..|||+|..| ..+..+|..|...+
T Consensus 48 ~~~~vVv~c~~g--~~a~~aa~~L~~~G 73 (145)
T cd01535 48 AAERYVLTCGSS--LLARFAAADLAALT 73 (145)
T ss_pred CCCCEEEEeCCC--hHHHHHHHHHHHcC
Confidence 457899999874 44455555555444
No 92
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=23.59 E-value=2.4e+02 Score=31.69 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCC---------CCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDD---------HNCPPIQLIASFCRSAYSWLKEDILNV 93 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD---------~~~P~l~~L~~f~~~v~~wL~~d~~nv 93 (452)
..+++.+.|+. +...|++.+....|......+ -.+++|.. +..|+.+.+...+..+ --+++..
T Consensus 12 s~~eL~~~l~~---~~vvIIDvR~~~eY~~GHIPG-Av~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~l----GI~~d~~ 83 (610)
T PRK09629 12 EPNDLLERLDA---PELILVDLTSSARYEAGHIRG-ARFVDPKRTQLGKPPAPGLLPDTADLEQLFGEL----GHNPDAV 83 (610)
T ss_pred cHHHHHHHhcC---CCEEEEECCChHHHHhCCCCC-cEEcChhHhhccCCCCCCCCCCHHHHHHHHHHc----CCCCCCE
Confidence 35778888854 257788886433454322222 23455531 2235555555544333 1245678
Q ss_pred EEEEcCCCCChhH
Q 012952 94 VVVHCKAGMARTG 106 (452)
Q Consensus 94 VvVHCkaGkGRTG 106 (452)
|||.|..|..+++
T Consensus 84 VVvYd~~g~~~A~ 96 (610)
T PRK09629 84 YVVYDDEGGGWAG 96 (610)
T ss_pred EEEECCCCCchHH
Confidence 9999998765554
No 93
>PHA03249 DNA packaging tegument protein UL25; Provisional
Probab=23.48 E-value=2.3e+02 Score=31.87 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=13.6
Q ss_pred hccccceeccCCC--Cccc
Q 012952 434 MAADASVFSFGDD--EDYE 450 (452)
Q Consensus 434 ~~~~~~~~~~~~~--~~~~ 450 (452)
=+|+++-|||||- ||||
T Consensus 171 ~~~~~~e~~~~~~~~~~f~ 189 (653)
T PHA03249 171 DLAEGHEFSFCDSDIEDFE 189 (653)
T ss_pred CcccccccccccccHHHHH
Confidence 4789999999996 5555
No 94
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.24 E-value=1.3e+02 Score=25.44 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhc
Q 012952 89 DILNVVVVHCKAGMARTGLMICSLLLFLK 117 (452)
Q Consensus 89 d~~nvVvVHCkaGkGRTGt~iaayLl~~~ 117 (452)
+.+..|+|+|..| .|+... +..|...+
T Consensus 56 ~~~~~vvlyC~~G-~rS~~a-a~~L~~~G 82 (101)
T TIGR02981 56 DKNDTVKLYCNAG-RQSGMA-KDILLDMG 82 (101)
T ss_pred CCCCeEEEEeCCC-HHHHHH-HHHHHHcC
Confidence 4456899999887 365444 34444433
No 95
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.23 E-value=1.3e+02 Score=25.05 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 012952 23 HMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRSAYSWLKEDILNVVVVHCKAGM 102 (452)
Q Consensus 23 ~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~v~~wL~~d~~nvVvVHCkaGk 102 (452)
..+++...|... ...+.|++++....|......+ ..++ | ...+. .... + .-.++..|||+|..|.
T Consensus 11 s~~el~~~l~~~-~~~~~iiDvR~~~e~~~ghIpg-A~~i-------p-~~~l~---~~~~-~-~i~~~~~vvvyc~~g~ 75 (110)
T cd01521 11 DCWDVAIALKNG-KPDFVLVDVRSAEAYARGHVPG-AINL-------P-HREIC---ENAT-A-KLDKEKLFVVYCDGPG 75 (110)
T ss_pred CHHHHHHHHHcC-CCCEEEEECCCHHHHhcCCCCC-CEeC-------C-HHHhh---hHhh-h-cCCCCCeEEEEECCCC
Confidence 356777777653 1357899996433343322211 1122 2 22211 0100 1 1234678999998876
Q ss_pred ChhHHHHHHHHHHhc
Q 012952 103 ARTGLMICSLLLFLK 117 (452)
Q Consensus 103 GRTGt~iaayLl~~~ 117 (452)
...+..++..|...+
T Consensus 76 ~~~s~~~a~~l~~~G 90 (110)
T cd01521 76 CNGATKAALKLAELG 90 (110)
T ss_pred CchHHHHHHHHHHcC
Confidence 433334444443333
No 96
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=21.01 E-value=4e+02 Score=32.18 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=52.3
Q ss_pred ceEEEcCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEEeCcCCccCcccccCceEEeecCCCCCCCHHHHHHHHHH-HHHH
Q 012952 7 NIIAMGFPAGDISSGNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFQGKVACFPFDDHNCPPIQLIASFCRS-AYSW 85 (452)
Q Consensus 7 rIIam~~P~~~~e~~N~i~dV~~fL~~~h~~~y~V~NL~sEr~yd~s~f~~~V~~~p~pD~~~P~l~~L~~f~~~-v~~w 85 (452)
||++.+.--. +++||++||..+...+ ||-+ .+ .|.+-.+...+.-++.. ..--....+-+.|.+ +..+
T Consensus 277 RivgLSATlP------N~eDvA~fL~vn~~~g--lfsF-d~-~yRPvpL~~~~iG~k~~-~~~~~~~~~d~~~~~kv~e~ 345 (1230)
T KOG0952|consen 277 RIVGLSATLP------NYEDVARFLRVNPYAG--LFSF-DQ-RYRPVPLTQGFIGIKGK-KNRQQKKNIDEVCYDKVVEF 345 (1230)
T ss_pred EEEEeeccCC------CHHHHHHHhcCCCccc--eeee-cc-cccccceeeeEEeeecc-cchhhhhhHHHHHHHHHHHH
Confidence 7777774322 6899999998873222 2333 22 34443333344444444 222334455555543 5667
Q ss_pred HHhcCCCeEEEEcCCCCChhHHHHHHHHHHh
Q 012952 86 LKEDILNVVVVHCKAGMARTGLMICSLLLFL 116 (452)
Q Consensus 86 L~~d~~nvVvVHCkaGkGRTGt~iaayLl~~ 116 (452)
++.+..--|.||-+++--|+|-.++---+..
T Consensus 346 ~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~ 376 (1230)
T KOG0952|consen 346 LQEGHQVLVFVHSRNETIRTAKKLRERAETN 376 (1230)
T ss_pred HHcCCeEEEEEecChHHHHHHHHHHHHHHhc
Confidence 7665433455675555556655555444433
No 97
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.80 E-value=1.1e+02 Score=24.80 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=13.9
Q ss_pred eEEEEcCCCCChhHHHHHH
Q 012952 93 VVVVHCKAGMARTGLMICS 111 (452)
Q Consensus 93 vVvVHCkaGkGRTGt~iaa 111 (452)
.|+|.|.+|.| |++|++.
T Consensus 2 kilvvCg~G~g-tS~ml~~ 19 (87)
T cd05567 2 KIVFACDAGMG-SSAMGAS 19 (87)
T ss_pred EEEEECCCCcc-HHHHHHH
Confidence 48899999999 5566554
Done!