Query 012953
Match_columns 452
No_of_seqs 137 out of 221
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ilr_A Protein FACE, fanconi a 98.6 2.1E-06 7.2E-11 83.9 18.9 180 213-396 63-246 (264)
2 1abv_A Delta subunit of the F1 34.2 51 0.0017 27.4 4.9 88 299-398 45-132 (134)
3 3ech_A MEXR, multidrug resista 22.4 2.9E+02 0.0098 22.1 7.3 103 288-396 34-137 (142)
4 2lm4_A Succinate dehydrogenase 19.7 1.1E+02 0.0039 26.0 4.4 37 371-412 42-78 (109)
5 4gco_A Protein STI-1; structur 17.7 2.2E+02 0.0077 22.3 5.6 69 164-243 6-74 (126)
6 2h5n_A Hypothetical protein PG 16.8 4E+02 0.014 22.4 7.2 58 322-394 34-91 (133)
7 3m03_A ORC6, origin recognitio 16.7 24 0.00083 29.7 -0.5 43 173-226 18-60 (95)
8 2zc2_A DNAD-like replication p 14.8 2.3E+02 0.0078 21.6 4.7 40 370-412 5-45 (78)
9 3k2a_A Homeobox protein MEIS2; 14.8 2E+02 0.0068 21.6 4.3 31 382-412 5-36 (67)
10 2ilr_A Protein FACE, fanconi a 12.8 6.1E+02 0.021 24.7 8.1 90 288-400 46-159 (264)
No 1
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=98.62 E-value=2.1e-06 Score=83.94 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=152.9
Q ss_pred CCchhHHHHhHHHhhc---CCChHHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcC-chhhhhhhhcccccCCC
Q 012953 213 KWTPNAMFQATRIFSS---NLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGT 288 (452)
Q Consensus 213 ~WSp~A~~~aTriF~S---nl~~~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyK-P~AFfkGil~PL~~s~~ 288 (452)
+-|..++++....+.+ -++-..|..|....+||++++- +..-.-+|..|+.--.-| |.||..|+++||+..+.
T Consensus 63 ~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L---~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~ 139 (264)
T 2ilr_A 63 QLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL---TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPG 139 (264)
T ss_dssp GCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC---SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 6788899998886666 4567889999999999999987 677788888888766544 99999999999998776
Q ss_pred cchhHHHHHHHHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHH
Q 012953 289 CNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWH 368 (452)
Q Consensus 289 CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWH 368 (452)
-..-.+-+|..+|.--++++.|.+..+-.+-+.+|+-.+...+..+|++|-.|.-..++.+|..+..-...-.. -..+-
T Consensus 140 ~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk-SlkFa 218 (264)
T 2ilr_A 140 TGPAQTELLCCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT-SMAYA 218 (264)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC-SHHHH
T ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc-ccHHH
Confidence 67788889999998677999999999999999999999999999999999999999999999988754432221 46799
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012953 369 QSLLAFVQRYKNELQKEDKDDLRILLKK 396 (452)
Q Consensus 369 QsLL~FvqrYk~dls~eqk~~L~~Ll~~ 396 (452)
+-+|+|+..|...|++.|+..|...+..
T Consensus 219 kLll~~itky~~~i~~~~~~~L~~~l~~ 246 (264)
T 2ilr_A 219 KLMLTVMTKYQANITETQRLGLAMALEP 246 (264)
T ss_dssp HHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999999888887743
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=34.19 E-value=51 Score=27.43 Aligned_cols=88 Identities=7% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHh
Q 012953 299 SVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRY 378 (452)
Q Consensus 299 SVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrY 378 (452)
.+|. -.||.-.-...|..++.-..+..+.-||++|++++- ...+..++..|....+..+.. ..+-| ..
T Consensus 45 ~~l~-P~i~~~~K~~~l~~~~~~~~~~~~~nfl~ll~~~~R---l~~l~~I~~~f~~l~~~~~~~-------~~a~V-~S 112 (134)
T 1abv_A 45 ELLS-GALAPETLAESFIAVCGEQLDENGQNLIRVMAENGR---LNALPDVLEQFIHLRAVSEAT-------AEVDV-IS 112 (134)
T ss_dssp HHHT-CSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHC-ccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHCCe-------eEEEE-Ee
Confidence 3444 445555555666677665566677789999999884 234556666665555432110 00000 12
Q ss_pred hhhcCHHHHHHHHHHHHhCC
Q 012953 379 KNELQKEDKDDLRILLKKQK 398 (452)
Q Consensus 379 k~dls~eqk~~L~~Ll~~~~ 398 (452)
...||++|++.|.+.|.+..
T Consensus 113 A~~Ls~~q~~~l~~~L~~~~ 132 (134)
T 1abv_A 113 AAALSEQQLAKISAAMEKRL 132 (134)
T ss_dssp --------------------
T ss_pred cCCCCHHHHHHHHHHHHHHh
Confidence 34789999999988876543
No 3
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=22.42 E-value=2.9e+02 Score=22.12 Aligned_cols=103 Identities=10% Similarity=0.005 Sum_probs=57.1
Q ss_pred CcchhHHHHHHHHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHH-HHHHHHHHhhhccCCCcchH
Q 012953 288 TCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVV-DAIVAHFMRFLEDTRVMPVI 366 (452)
Q Consensus 288 ~CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~vi-DalV~hFlrF~~~~~~lPVl 366 (452)
+.|..+..|+..+-..-.+.+-- |.....++ .++.|-.|..|.++.|---.+-- |.=. ..+......+.+---
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~e----La~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~DrR~-~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQD----LGRQMCRD-KALITRKIRELEGRNLVRRERNPSDQRS-FQLFLTDEGLAIHLH 107 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHH----HHHHHC----CHHHHHHHHHHHTTSEEC-----------CCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCHHH----HHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCCCCe-eeeEECHHHHHHHHH
Confidence 37788888887776654443332 22233333 46778889999999885432211 1100 111111222222233
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012953 367 WHQSLLAFVQRYKNELQKEDKDDLRILLKK 396 (452)
Q Consensus 367 WHQsLL~FvqrYk~dls~eqk~~L~~Ll~~ 396 (452)
+.+.+-.+.+..-..+++++.+.|..++.+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (142)
T 3ech_A 108 AELIMSRVHDELFAPLTPVEQATLVHLLDQ 137 (142)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455556666677788999999999998864
No 4
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=19.68 E-value=1.1e+02 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhh
Q 012953 371 LLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 412 (452)
Q Consensus 371 LL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~ 412 (452)
|-.|+++|-..+|.+|...+-.||... .++|-.=+..
T Consensus 42 L~~F~~~~~~~ls~~el~~f~~LL~~~-----D~DL~~wl~g 78 (109)
T 2lm4_A 42 LSGFAAKYLKKMNEEELEEYDSLLNEL-----DWDIYYWATK 78 (109)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTSC-----HHHHHHHHTT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHcCC-----CHHHHHHHhC
Confidence 449999999999999999999988542 4566555554
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=17.68 E-value=2.2e+02 Score=22.35 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=49.8
Q ss_pred CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhh
Q 012953 164 PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 243 (452)
Q Consensus 164 ~~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~~~aqrF~~~VL 243 (452)
..|||...+.|...|..+ |+.|+..+|++ .++..|.+ .|.. +.+.+.-..++...=+-..|...|+.+|
T Consensus 6 a~inP~~a~~~~~~G~~~--~~~g~~~~A~~------~~~~al~~-~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEY--FKKGDYPTAMR------HYNEAVKR-DPEN--AILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp -CCCHHHHHHHHHHHHHH--HHTTCHHHHHH------HHHHHHHH-CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHH--HHcCCHHHHHH------HHHHHHHh-CCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 369999999999999865 78999999865 46777776 3654 4455555555555557777777777655
No 6
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=16.77 E-value=4e+02 Score=22.44 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=38.0
Q ss_pred cCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 012953 322 EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILL 394 (452)
Q Consensus 322 ~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll 394 (452)
.++..---+++.++.+ |.|+-.-.+.++.+|-.+ ..-.+++.++ .++.++|..+++.+
T Consensus 34 ~v~~~E~~~l~~~l~~-lgl~~~e~~~l~~~~~~~-------------~~~~~~~~~~-~~~~e~r~~ll~~L 91 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMR-FGILQDQVDLLLKASDSI-------------EASQAVALIA-RMDEERKKYVASYL 91 (133)
T ss_dssp CCCHHHHHHHHHHHGG-GTCCHHHHHHHHHHHTTS-------------CHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHhc-------------cHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3666777788888888 999988888888877311 1112223333 36788877776665
No 7
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=16.72 E-value=24 Score=29.66 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHh
Q 012953 173 LYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIF 226 (452)
Q Consensus 173 vY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF 226 (452)
+-+.+-.+|.+|+ ..||..=+ .=+.+++|. +++.|+|+|.|+-
T Consensus 18 ~~~~a~~lL~~Yk-~~l~~~~~---------~~~D~s~P~-f~aaA~~~acr~~ 60 (95)
T 3m03_A 18 AVNMASKILKSYE-SSLPQTQQ---------VDLDLSRPL-FTSAALLSACKIL 60 (95)
T ss_dssp GHHHHHHHHHHHH-TTSCHHHH---------HHCCTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHhHHHhh---------ccccccccH-HHHHHHHHHHHHH
Confidence 4466778999999 33442211 346788887 9999999999964
No 8
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=14.82 E-value=2.3e+02 Score=21.57 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHHhhh-hcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhh
Q 012953 370 SLLAFVQRYKN-ELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 412 (452)
Q Consensus 370 sLL~FvqrYk~-dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~ 412 (452)
.|+.|+|++.+ .+|+-+.+.|..++...+ .+||+..++..
T Consensus 5 ~l~~~~e~~~gr~ls~~e~~~i~~w~~~~~---~~~elI~~A~~ 45 (78)
T 2zc2_A 5 ALVEDFERELGRMLSPFELEDLQKTVSDDK---TDPDLVRSALR 45 (78)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHTTTC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 57788888877 899999999999997643 46888877764
No 9
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=14.77 E-value=2e+02 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhC-CCCCCCHHHHHHHhh
Q 012953 382 LQKEDKDDLRILLKKQ-KHKLVTPEIIRELDS 412 (452)
Q Consensus 382 ls~eqk~~L~~Ll~~~-~H~~ItpEIrreL~~ 412 (452)
++.+|+..|...+..| .|+-.|++.+.+|..
T Consensus 5 f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~ 36 (67)
T 3k2a_A 5 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQ 36 (67)
T ss_dssp -CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
No 10
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=12.85 E-value=6.1e+02 Score=24.67 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHhccCCchhcHHHHHHHHhcccC---CchHHHHHHHHHHhh--------------------hcCcHH
Q 012953 288 TCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY---CGTTSYFIKLLLEKK--------------------YGLPYR 344 (452)
Q Consensus 288 ~CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~---sg~~s~firvLldKK--------------------YaLPy~ 344 (452)
+|+.++--.+.+-|.-.+++=--.......+..+.+ .+..++|++.|+=-| -+.|+-
T Consensus 46 ~~sp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L~~~ASR~L~sal~~f~k~~p~a 125 (264)
T 2ilr_A 46 ECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSLTSSASRLLTTALTSFAAKYTYP 125 (264)
T ss_dssp GCCHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHSHHH
T ss_pred hCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhCcHH
Q ss_pred HHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH-hCCCC
Q 012953 345 VVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLK-KQKHK 400 (452)
Q Consensus 345 viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~-~~~H~ 400 (452)
++++++. |++|- ..+...|.+.|..+++ .-.|+
T Consensus 126 ~~~all~------------PLL~~-----------~~~g~~Q~eLi~rlik~e~l~p 159 (264)
T 2ilr_A 126 VCSALLD------------PVLQA-----------PGTGPAQTELLCCLVKMESLEP 159 (264)
T ss_dssp HHHHHHH------------HHHHS-----------TTCCHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHH------------HHHcC-----------CCCCHHHHHHHHHHHHhccCCH
Done!