BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012954
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6MEG4|RSMH_PARUW Ribosomal RNA small subunit methyltransferase H OS=Protochlamydia
amoebophila (strain UWE25) GN=rsmH PE=3 SV=1
Length = 316
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 30/337 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L EV++ F + + F+D TLGA GH+ AI+ HPE++L++G+D DP+AL A
Sbjct: 8 HRSVLLEEVIEAFQPVQ-LKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L K NF L +I S +D +L+DLG+SSMQ++ P
Sbjct: 67 KRLEKWKQ-------KILLKQGNFSQFDIFLKEIG----FSSMDGLLVDLGVSSMQLDQP 115
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS DGPLDMRM+P+ L A DI+N+W + ++G++ R+YGEE W L IVQAR
Sbjct: 116 ERGFSFSKDGPLDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQAR 175
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +T +L +L++ P + I T +FQALRI VN EL LE + FD
Sbjct: 176 QVKQILTTTDLANLLK---PAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFD 232
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
L PGGR+ VISFHSLEDRIVK L + ++ + G L RD
Sbjct: 233 YLKPGGRVAVISFHSLEDRIVKNE-LRLAASDKWETTGLGSGL--FRDKKP--------- 280
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
K++ ++PI P +E + N R RSAK R+ +K+
Sbjct: 281 ---VAKLVNRKPICPHEKEIKENPRSRSAKFRIAEKL 314
>sp|C6D563|RSMH_PAESJ Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus
sp. (strain JDR-2) GN=rsmH PE=3 SV=1
Length = 316
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 184/342 (53%), Gaps = 34/342 (9%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
HI V+L E +D + + +VDCTLG AGHS I+ I D D +AL AR
Sbjct: 4 HITVLLEEAVDGLAI-KPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDNAR 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRS--GVDAILMDLGMSSMQV 232
L P++ T K NFR+++ +L D + VD IL DLG+SS Q+
Sbjct: 63 VRLA--------PYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQL 114
Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
+ ERGFS D PLDMRMD +L A DI+NSW + E+ R+L YGEE + KIV
Sbjct: 115 DEAERGFSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIV 174
Query: 293 QARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
QAR + +TGEL +L+++ P RR G A R FQALRIAVNDEL E +L
Sbjct: 175 QARENAPIETTGELAELVKTGIPAA-ARRTGG-HPAKRSFQALRIAVNDELGAEEDALEE 232
Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIR 412
C+ PGGR+ VI+FHSLEDRI KQ F S ++ +
Sbjct: 233 AVKCIRPGGRISVITFHSLEDRICKQLFASYVEKCTCPPD------------------FP 274
Query: 413 QIIQGWNGK--ILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ + G GK ++ ++PI P+ +E +N R RSAKLRV +K+
Sbjct: 275 KCVCGGTGKLRLVNRKPIVPTEQELEVNPRSRSAKLRVAEKL 316
>sp|Q07876|RSMH_BACSU Ribosomal RNA small subunit methyltransferase H OS=Bacillus
subtilis (strain 168) GN=rsmH PE=3 SV=2
Length = 311
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 188/348 (54%), Gaps = 54/348 (15%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + + ++VDCTLG AGHS+ +++ E I D D +AL A+
Sbjct: 4 HKTVLLRETVDGLNI-KPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L+ GQ NFR++K L + + + + VD IL DLG+SS Q++ P
Sbjct: 63 EVLSDY-KGQ------LILIKSNFRYLKEYLNE--QGV--TEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A+L A++++N W ++ R+ +YGEE + KI +AR
Sbjct: 112 ERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
++ + +TG+LVDLI+ P RR G A RVFQA+RIAVNDEL+ E +L +
Sbjct: 172 MKSPIQTTGQLVDLIKDAIPAP-ARRSGG-HPAKRVFQAIRIAVNDELRVFEEALEQAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTF------------LSIIDHNREDAEGNEEELRNIRD 403
L PGGR+ VI+FHSLEDRI K TF L +I E E EL
Sbjct: 230 VLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVI------PEEFEPEL----- 278
Query: 404 DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PIT S EE N R RSAKLR+ +K
Sbjct: 279 -----------------KLITRKPITASQEELEENNRARSAKLRIAEK 309
>sp|A8FCX3|RSMH_BACP2 Ribosomal RNA small subunit methyltransferase H OS=Bacillus pumilus
(strain SAFR-032) GN=rsmH PE=3 SV=1
Length = 310
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 183/342 (53%), Gaps = 42/342 (12%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + T +VDCTLG AGHSS ++ E IG D D +AL AR
Sbjct: 4 HETVLLKETVDGLNVKEDGT-YVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHAR 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L A NFR++K L + + I + VD ++ DLG+SS Q++ P
Sbjct: 63 EKL-------AGSKANILFIKSNFRYLKERLNE--QGI--TSVDGVIFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A+L A+ ++N WP ++ R+ +YGEE + KI +AR
Sbjct: 112 ERGFSYHHDAPLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEAR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TGELVD+I+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 172 KKAPIETTGELVDIIKEGIPAP-ARRTGG-HPAKRVFQAIRIAVNDELKVFEEALEQAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTF-----LSIIDHNRE-DAEGNEEELRNIRDDNINET 409
L P GR+ VI+FHSLEDRI K TF L + H EG E +L
Sbjct: 230 LLNPKGRISVITFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKL----------- 278
Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI S +E N R RSAKLR+ +K
Sbjct: 279 -----------KLITRKPIVASEQELEHNNRARSAKLRIAEK 309
>sp|A4J2A3|RSMH_DESRM Ribosomal RNA small subunit methyltransferase H OS=Desulfotomaculum
reducens (strain MI-1) GN=rsmH PE=3 SV=1
Length = 313
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 191/344 (55%), Gaps = 44/344 (12%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIR-AHPELKLHIGVDVDPSALAKA 174
H+ V+L E +D + +VDCTLG AGHS I+R PE KL +G+D DP+A+A A
Sbjct: 5 HVSVLLHESIDGLKI-KPGGIYVDCTLGGAGHSLEILRRLGPEGKL-VGIDQDPAAIANA 62
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
L GQ H +NF IK +L + S VD IL DLG+SS Q++
Sbjct: 63 AEKLQEF-PGQ------FHAVQRNFFQIKQIL----REMAISEVDGILFDLGVSSYQLDT 111
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS + D LDMRM P ++ A++++N + E+ ++R YGE+ + + IV+
Sbjct: 112 PERGFSYMHDAELDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKE 171
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +H+TGELVD+I++ P + RR+G A R FQALRIAVN+EL+ LE ++
Sbjct: 172 RKKRAIHTTGELVDIIKAAVP-VGARREGP-HPAKRTFQALRIAVNNELEILEQTMKDAV 229
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNRED------AEGNEEELRNIRDDNINE 408
L GGR+ VI+FHSLEDRI+K TF + + A G + ++
Sbjct: 230 TALKSGGRISVITFHSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQI---------- 279
Query: 409 TWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
KI+T +PI PS EE N R RSAKLR+ +K+
Sbjct: 280 ------------KIVTGKPIQPSKEELEHNPRARSAKLRIAEKL 311
>sp|Q894B4|RSMH_CLOTE Ribosomal RNA small subunit methyltransferase H OS=Clostridium
tetani (strain Massachusetts / E88) GN=rsmH PE=3 SV=1
Length = 310
Score = 205 bits (522), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 31/337 (9%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
HI V+L E ++ + +VDCTLG AGHSS I++ + IG+D D AL A
Sbjct: 5 HISVLLDECIEGLNIKEN-GIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAAS 63
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L + L H+ NF HIK +L +++ VD ILMDLG+SS Q++
Sbjct: 64 EKLK-----EYENVLYKHS---NFYHIKDILEELE----VGKVDGILMDLGVSSYQLDEK 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
RGFS + + PLDMRM+ ++SL A +++N + ++++ R++++YGEE + N IV++R
Sbjct: 112 SRGFSYMQNAPLDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELVD+I+ P + RR+G A R FQA+RI VN EL+ L ++
Sbjct: 172 ENKKIETTGELVDIIKRAIPA-KFRREGP-HPAKRTFQAIRIEVNGELEILNKAIEDSVK 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
L GGR+ +I+FHSLEDRIVK F + E+ +D I ++
Sbjct: 230 SLKSGGRIAIITFHSLEDRIVKNKFKEL-----------EDPCICPKDFPICTCGKEPLV 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
KI+T++PI PS EE +N R RSAKLR+ +K+
Sbjct: 279 -----KIITRKPIDPSKEEVEINPRSRSAKLRIAEKL 310
>sp|Q65JY8|RSMH_BACLD Ribosomal RNA small subunit methyltransferase H OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=rsmH PE=3
SV=1
Length = 312
Score = 204 bits (520), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 185/337 (54%), Gaps = 32/337 (9%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + T +VDCTLG AGHS ++ E + D D +AL A+
Sbjct: 4 HTTVLLKETVDGLNVKEDGT-YVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRHAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
L GQ F K NFR++K L +I + VD +L DLG+SS Q++
Sbjct: 63 EKLADY-EGQV-------VFIKSNFRYLKDRLNEIG----ITKVDGVLFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A++++N WP ++ ++ +YGEE + KI +A
Sbjct: 111 PERGFSYHHDAPLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKA 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + + +TG+LVD+I+ P RR G A R+FQA+RIAVNDEL+ E +L
Sbjct: 171 REQSPIETTGQLVDIIKEAIPAP-ARRSGG-HPAKRIFQAIRIAVNDELRVFEEALLQAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ L PGGR+ VI+FHSLEDRI K TF +D E + I + + ++
Sbjct: 229 EVLKPGGRVSVITFHSLEDRICKSTF--------KDMSSPPELPHGL--PVIPKEFEPKL 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++ ++PIT S EE N R RSAKLR+ +K
Sbjct: 279 ------KLVNRKPITASEEELEHNNRARSAKLRIAEK 309
>sp|A4IM00|RSMH_GEOTN Ribosomal RNA small subunit methyltransferase H OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rsmH PE=3 SV=1
Length = 310
Score = 204 bits (520), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 180/336 (53%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + R +VDCTLG GHS ++ + D D +A+ A
Sbjct: 4 HTTVLLKEAVDGLNV-RPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILHAS 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L A + +NFR ++ L + + VD IL DLG+SS Q++ P
Sbjct: 63 ERL-------ARYREQVQFINRNFRFLQEELSALGIH----AVDGILFDLGVSSPQLDEP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD + L A +I+N WP E+ R+ YGEE + KI + R
Sbjct: 112 ERGFSYQHDAPLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TGELV++I++ P RR G A R+FQALRIAVNDEL+ +L +
Sbjct: 172 RKRPIETTGELVEVIKAAIPAP-ARRSGG-HPAKRIFQALRIAVNDELEAFREALEQAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
LAPGGR+ VI+FHSLEDRI K+TF ++ L + DD R ++
Sbjct: 230 LLAPGGRVSVITFHSLEDRICKETF-----KKASESPPLPPGLPVLPDD------YRPVL 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
KI+TK+P+ PSAEE N R RSAKLR+ +K
Sbjct: 279 -----KIITKKPVVPSAEELERNNRARSAKLRIAEK 309
>sp|A9VU80|RSMH_BACWK Ribosomal RNA small subunit methyltransferase H OS=Bacillus
weihenstephanensis (strain KBAB4) GN=rsmH PE=3 SV=1
Length = 310
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 179/336 (53%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V+L E +D + T +VDCTLG GHSS ++ + I D D A+ A+
Sbjct: 4 HVTVLLKETVDGLDIKPSGT-YVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++ P
Sbjct: 63 EKFSS--YGEQFVTVKS-----NFRYLSEKLHELG----ITEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI R
Sbjct: 112 ERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L + D
Sbjct: 172 ENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAID 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
+ PGGR+ VI+FHSLEDRI K TF R + I D
Sbjct: 230 MVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPQGLPIIPDEFKPKL----- 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|A5D113|RSMH_PELTS Ribosomal RNA small subunit methyltransferase H OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=rsmH PE=3 SV=1
Length = 311
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 188/344 (54%), Gaps = 44/344 (12%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSALAKA 174
H PVML EVL+ + + +VDCT+G AGH AI+ R E +L IG+D DP ALA A
Sbjct: 5 HRPVMLDEVLEGLNL-KPGGVYVDCTVGGAGHGEAILKRTGAEGRL-IGIDRDPEALAAA 62
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
L + +G+ + NF I VL E + ++GVD IL DLG+SS Q++N
Sbjct: 63 ERRL--VPYGK-----RVDLVRANFEDIGKVL----ERLGQTGVDGILFDLGVSSYQLDN 111
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
P RGFS D LDMRMDP+ A +++N+ E+ R++++YGEE + IV+
Sbjct: 112 PARGFSYKRDSLLDMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEE 171
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R R + +TG L ++I+ P G R+ A R FQALRIAVN EL+ L +L +
Sbjct: 172 RKRSPIETTGRLAEIIKKAIPA--GARREGPHPARRTFQALRIAVNRELEVLGGALRSAV 229
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAE------GNEEELRNIRDDNINE 408
L PGGR+ VI++HSLEDRIVK+TF + E G ++E+
Sbjct: 230 RVLRPGGRICVITYHSLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEI---------- 279
Query: 409 TWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
KI+T RP+ PSA E N R RSAKLR+ +K+
Sbjct: 280 ------------KIVTARPVVPSAGEVEENPRARSAKLRIAEKL 311
>sp|Q5L0Y4|RSMH_GEOKA Ribosomal RNA small subunit methyltransferase H OS=Geobacillus
kaustophilus (strain HTA426) GN=rsmH PE=3 SV=1
Length = 310
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 182/337 (54%), Gaps = 30/337 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + R +VDCTLG+ GHS ++ E D D +A+ AR
Sbjct: 4 HTTVLLKEAVDGLNI-RPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMHAR 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L +G+ + +NFR ++ L + VD +L DLG+SS Q++ P
Sbjct: 63 ERLAR--YGR-----QVQFVHRNFRFLQEELSALGVK----SVDGVLFDLGVSSPQLDEP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRM+ + L A +I+N WP E+ R+ YGEE + KI + R
Sbjct: 112 ERGFSYQHDAPLDMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELVD+I++ P RR G A R+FQALRIAVNDEL+ +L +
Sbjct: 172 RTRPIKTTGELVDVIKAAIPAP-ARRSGG-HPAKRIFQALRIAVNDELEAFREALEQAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
LAPGGR+ VI+FHSLEDRI K+TF ++ L + DD R ++
Sbjct: 230 LLAPGGRVSVITFHSLEDRICKETF-----KKASESPPLPPGLPVLPDD------YRPVL 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
KI+TK+PI PS EE N R RSAKLR+ +K+
Sbjct: 279 -----KIITKKPIVPSEEELERNHRARSAKLRIAEKL 310
>sp|Q6HEP6|RSMH_BACHK Ribosomal RNA small subunit methyltransferase H OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=rsmH
PE=3 SV=1
Length = 310
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 180/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD ASL A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|C0ZGB3|RSMH_BREBN Ribosomal RNA small subunit methyltransferase H OS=Brevibacillus
brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rsmH PE=3
SV=1
Length = 314
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 184/337 (54%), Gaps = 30/337 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V++ E + + R +VDCTLG AGHSS I E I +D D AL AR
Sbjct: 8 HVTVLMDEAVQGLNI-RPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAIDQDDWALDNAR 66
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L S + + NFRHIK ++ +++ SGVD +L DLG+SS Q++
Sbjct: 67 ERLASYMD-------RVTLVKSNFRHIKDIV----KDLGLSGVDGVLFDLGVSSPQLDEG 115
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD QA L A DI+N W + E+ +++ YGEE + +IVQ R
Sbjct: 116 ERGFSYNADAPLDMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQR 175
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TGELV+LI+ P RR G A R FQA+RIAVNDEL + ++ +
Sbjct: 176 KKQPIQTTGELVELIKEGIPAA-ARRTG-PHPAKRTFQAIRIAVNDELDAFKEAVVDAIE 233
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
L P GR+ VI+FHSLEDRI KQ + ++ ++G N+ +
Sbjct: 234 VLNPEGRVSVITFHSLEDRICKQIY-------QDFSKGCTCPPAFPICTCGNKAVV---- 282
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
K++T++PI PS EE N R RSAKLRV +K+
Sbjct: 283 -----KVITRKPILPSEEELEANKRARSAKLRVAEKL 314
>sp|B1ZU25|RSMH_OPITP Ribosomal RNA small subunit methyltransferase H OS=Opitutus terrae
(strain DSM 11246 / PB90-1) GN=rsmH PE=3 SV=1
Length = 306
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 176/337 (52%), Gaps = 35/337 (10%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H PV+L EVL F + R ++DCT G GH+ A++ A E+++ + +D DP+A +A
Sbjct: 5 HQPVLLREVLG-FLAPRARGRYLDCTFGGGGHTRALLEAAAEVRV-VALDRDPAAQPRAA 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
A TF + F I G++ E + G D +L D G+SS Q++
Sbjct: 63 A--------------LRETFGERFEFIDRDFGRLAE-LPHEGFDGVLFDFGVSSFQLDET 107
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D P DMRMDP++ + A L + + + R +R++GEE +W + I AR
Sbjct: 108 ERGFSFRHDAPADMRMDPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDAR 167
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
G L T L +LI + P R I ATR FQ +RIAVNDE+ +E +L A F
Sbjct: 168 GTGALARTASLAELIAAAIPAC-DRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFA 226
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
LAPGG L VISFHSLEDR KQ F + A+ ++LR D
Sbjct: 227 KLAPGGVLCVISFHSLEDRPAKQFFRRMCGQPESAADATPQDLRVKLADP---------- 276
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
LT+RP+TP+ +E N R RSAKLR ++++
Sbjct: 277 -------LTRRPVTPADDELAANPRSRSAKLRALRRL 306
>sp|A7Z4D7|RSMH_BACA2 Ribosomal RNA small subunit methyltransferase H OS=Bacillus
amyloliquefaciens (strain FZB42) GN=rsmH PE=3 SV=1
Length = 311
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 186/348 (53%), Gaps = 54/348 (15%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + + ++VDCTLG AGHS+ +++ E I D D +AL A+
Sbjct: 4 HKTVLLRETVDGLNI-KPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALENAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L S GQ NFR++K L + I + VD IL DLG+SS Q++ P
Sbjct: 63 KTL-SEYKGQ------LILVKSNFRYLKECLHE--HGI--TSVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A+L A++++N W ++ R+ +YGEE + KI +AR
Sbjct: 112 ERGFSYHHDAPLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TG+LVDLI+ P RR G A RVFQA+RIAVNDEL+ E +L +
Sbjct: 172 EKSPIQTTGQLVDLIKDAIPAP-ARRSGG-HPAKRVFQAIRIAVNDELQVFEEALLQAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTF------------LSIIDHNREDAEGNEEELRNIRD 403
L PGGR+ VI+FHSLEDR+ K TF L +I E E EL
Sbjct: 230 VLKPGGRVSVITFHSLEDRMCKMTFKEKSSLPELPPGLPVI------PEEFEPEL----- 278
Query: 404 DNINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PIT S EE N R RSAKLR+ +K
Sbjct: 279 -----------------KLITRKPITASKEELEENNRARSAKLRIAEK 309
>sp|B7H6Q4|RSMH_BACC4 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain B4264) GN=rsmH PE=3 SV=1
Length = 310
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 179/336 (53%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V+L E +D + + ++VDCTLG GHSS ++ E I D D A+ A+
Sbjct: 4 HVTVLLKETVDGLNI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+S +G+ +K+ NFR++ L +I + VD IL DLG+SS Q++ P
Sbjct: 63 EKFSS--YGEQFITVKS-----NFRYLAEKLQEIG----ITEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI R
Sbjct: 112 ERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L + +
Sbjct: 172 ENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
+ PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 230 MVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL----- 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|Q819P8|RSMH_BACCR Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=rsmH PE=3 SV=1
Length = 310
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 178/336 (52%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A+
Sbjct: 4 HVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+S +G+ +K+ NFR++ L +I + VD IL DLG+SS Q++ P
Sbjct: 63 EKFSS--YGEQFITVKS-----NFRYLAEKLQEIG----ITEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI R
Sbjct: 112 ERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L + +
Sbjct: 172 ENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
+ PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 230 MVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL----- 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|B7IVF3|RSMH_BACC2 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain G9842) GN=rsmH PE=3 SV=1
Length = 310
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 178/336 (52%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A+
Sbjct: 4 HVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+S +G+ +K+ NFR++ L +I + VD IL DLG+SS Q++ P
Sbjct: 63 EKFSS--YGEQFITVKS-----NFRYLAEKLQEIG----ITEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI R
Sbjct: 112 ERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L + +
Sbjct: 172 ENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
+ PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 230 MVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL----- 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|A7GRP4|RSMH_BACCN Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
subsp. cytotoxis (strain NVH 391-98) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 183/336 (54%), Gaps = 30/336 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ V+L E +D T +VDCTLG GHSS ++ E I D D A+ A+
Sbjct: 4 HVTVLLEETVDGLDIKPNGT-YVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++ P
Sbjct: 63 DKFSS--YGEQFIAVKS-----NFRYLSEKLHELG----ITEVDGILFDLGVSSPQLDTP 111
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
ERGFS D PLDMRMD +A L A D++N+W ++ R+ +YGEE + KI R
Sbjct: 112 ERGFSYHHDAPLDMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYR 171
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L A +
Sbjct: 172 EKKKIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALEAAIE 229
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
+ PGGR+ VI+FHSLEDRI K TF R I I E + ++
Sbjct: 230 IVKPGGRISVITFHSLEDRICKTTF------KRNSTTPELPPGLPI----IPEEFKPKL- 278
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 -----KLITRKPILPSDVELEENNRARSAKLRIAEK 309
>sp|Q636A8|RSMH_BACCZ Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ZK / E33L) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|C1EPT2|RSMH_BACC3 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain 03BB102) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|B7JK06|RSMH_BACC0 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain AH820) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|Q81WC3|RSMH_BACAN Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|A0RHT9|RSMH_BACAH Ribosomal RNA small subunit methyltransferase H OS=Bacillus
thuringiensis (strain Al Hakam) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|C3L6F3|RSMH_BACAC Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis (strain CDC 684 / NRRL 3495) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|C3P688|RSMH_BACAA Ribosomal RNA small subunit methyltransferase H OS=Bacillus
anthracis (strain A0248) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|B9IVZ5|RSMH_BACCQ Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain Q1) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|P62468|RSMH_BACC1 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain ATCC 10987) GN=rsmH PE=3 SV=1
Length = 310
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ +K+ NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGEQFITVKS-----NFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPA-PARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|Q39YM7|RSMH_GEOMG Ribosomal RNA small subunit methyltransferase H OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=rsmH PE=3 SV=1
Length = 313
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 183/344 (53%), Gaps = 43/344 (12%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+ VM EVL + S R +VD TLG AGH+ I+ A + +G D DP ALA A
Sbjct: 6 HLSVMPAEVLALLSP-RPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAAS 64
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAI---LMDLGMSSMQV 232
+ S F R ++S +DE++ G+D I L+DLG+SS Q+
Sbjct: 65 KRIAS--------------FGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQL 110
Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
+ ERGFS D PLDMRMDP+ A D++N E+ R++REYGEE + + +V
Sbjct: 111 DTAERGFSFQVDAPLDMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVV 170
Query: 293 QARLR-GGLHSTGELVDLIQSVTPGMRGRRQGW---IKTATRVFQALRIAVNDELKTLES 348
+AR + G + ST +LVD ++ P R W I ATR FQALRIAVNDEL +LE
Sbjct: 171 KAREQHGPIESTLQLVDCVKGAIP-----RAAWEERIHPATRTFQALRIAVNDELGSLER 225
Query: 349 SLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINE 408
L A + LAPGGR VISFHSLEDRIVK F R A+G R N+
Sbjct: 226 GLVAGIERLAPGGRGVVISFHSLEDRIVKTVF-------RRYAQGCTCPKMLPRCVCGNK 278
Query: 409 TWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+R ILT +P+ +E N R RSAK+R ++K+
Sbjct: 279 PRVR---------ILTGKPVMAGGDEVATNPRARSAKVRAVEKL 313
>sp|P60396|RSMH_GEOSL Ribosomal RNA small subunit methyltransferase H OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=rsmH PE=3 SV=1
Length = 311
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 183/339 (53%), Gaps = 32/339 (9%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
SH PVM EVL+ + S R +VD TLG AGH+ I+ A + IG D DP+AL A
Sbjct: 4 SHRPVMPAEVLE-YLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVA 62
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
R L L G+ + NF + VL ++ + GVD L+D+G+SS Q++
Sbjct: 63 RERLA--LFGE-----RFRPVPGNFSEMGRVLAELGVD----GVDGFLLDVGVSSHQLDT 111
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
ERGFS L D PLDMRM+ A D++N + E+ R+++EYGEE + + IV+A
Sbjct: 112 AERGFSFLTDAPLDMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKA 171
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R+ G + T +LVD+I+ P RG + I ATR FQALRIAVNDEL +LE L +
Sbjct: 172 RVDGPIERTLQLVDIIKGAIP--RGAWEERIHPATRTFQALRIAVNDELGSLERGLESAL 229
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
L PGGR VISFHSLEDRIVK F R A+G + R +
Sbjct: 230 GLLRPGGRGVVISFHSLEDRIVKTMF-------RRYAQGC----------TCPKELPRCV 272
Query: 415 IQGW-NGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
G +ILT RP+ E N R RSAKLR +K+
Sbjct: 273 CGGVPRLRILTGRPVVAGDVEVAENPRARSAKLRAAEKL 311
>sp|B4S6R7|RSMH_PROA2 Ribosomal RNA small subunit methyltransferase H OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=rsmH PE=3 SV=1
Length = 333
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 192/352 (54%), Gaps = 44/352 (12%)
Query: 111 QQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-----HPELKLHIGVD 165
+ H+PVM+ EV D+ + I ++D TLG GH+ +++ A L IG+D
Sbjct: 2 EHDGYHLPVMVSEVTDLLARRPGI--YIDGTLGGGGHAFSVMSALRRSGFENDSLLIGID 59
Query: 166 VDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSG----VDAI 221
D AL +A L + NF + +++ +I LR G V I
Sbjct: 60 QDSFALEEAAGRLRPFAS-------RVRLERGNFSEMAAIIERIR---LREGCRLPVMGI 109
Query: 222 LMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEE 281
L+DLG+SS Q++ P+RGFS L GPLDMRMDP A DI+N+ ++E+ ++ YGEE
Sbjct: 110 LLDLGVSSFQIDTPDRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEE 169
Query: 282 SNWHLLQNKI-VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVN 340
+ I + R +G T EL +++SV G RQ IK+ +RVFQALRIAVN
Sbjct: 170 KKSRAIARAIKARVREKGDFRETAELAAVVRSVVAGHD--RQ--IKSLSRVFQALRIAVN 225
Query: 341 DELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRN 400
DEL LES+L CLAP GR+GV+S+HSLEDR+VK+ F R+ +E
Sbjct: 226 DELGVLESALEDGTACLAPSGRMGVMSYHSLEDRMVKRFF-------RDKSE-------- 270
Query: 401 IRDD-NINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
DD +R+ ++ K++T++ + S +E R+N R RSA+LRVI+K
Sbjct: 271 --DDWGPKGVGLREPLRSAGFKLVTRKSVVASDDEVRINPRARSARLRVIEK 320
>sp|B7GGJ0|RSMH_ANOFW Ribosomal RNA small subunit methyltransferase H OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=rsmH PE=3 SV=1
Length = 313
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 184/339 (54%), Gaps = 34/339 (10%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSALAKA 174
H+ V+L E +D + + T +VDCTLG AGHS ++ + PE +L D D A+ A
Sbjct: 7 HVTVLLKETVDGLNIKKDGT-YVDCTLGGAGHSEYLLSQLSPEGRL-FAFDQDDIAIRHA 64
Query: 175 RAHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVN 233
+ L GQ T K NFR++K L + VD IL DLG+SS Q++
Sbjct: 65 QQRLERY-RGQ-------FTIIKSNFRYLKQQLALYGVH----EVDGILFDLGVSSPQLD 112
Query: 234 NPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQ 293
PERGFS + PLDMRMD + +L A D++N+WP ++ ++ +YGEE + KI Q
Sbjct: 113 MPERGFSYQHEAPLDMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQ 172
Query: 294 ARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC 353
R + + +T EL ++I+ P RR G A RVFQA+RIAVNDEL+ E ++
Sbjct: 173 TRKQKPIETTTELAEVIKEAIPAP-ARRTGG-HPAKRVFQAIRIAVNDELRAFEEAIEQA 230
Query: 354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQ 413
D L PGGR+ VI+FHSLEDRI K F + L I D+ +
Sbjct: 231 IDLLKPGGRISVITFHSLEDRICKIAF-----KQASETPHLPPGLPIIPDEYKPKL---- 281
Query: 414 IIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
KI+TK+PI PS EE + N R RSAKLR+ +K+
Sbjct: 282 -------KIITKKPIVPSEEELQHNHRARSAKLRIAEKL 313
>sp|B7HM39|RSMH_BACC7 Ribosomal RNA small subunit methyltransferase H OS=Bacillus cereus
(strain AH187) GN=rsmH PE=3 SV=1
Length = 310
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 178/337 (52%), Gaps = 30/337 (8%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
+H+ V+L E +D + ++VDCTLG GHSS ++ E I D D A+ A
Sbjct: 3 NHVTVLLKETVDGLDI-KPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNA 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ +S +G+ + T NFR++ L ++ + VD IL DLG+SS Q++
Sbjct: 62 KEKFSS--YGE-----QFITVRSNFRYLSEKLQELG----ITEVDGILFDLGVSSPQLDT 110
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS D PLDMRMD A L A D++NSW ++ R+ +YGEE + KI
Sbjct: 111 PERGFSYHHDAPLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAY 170
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +TGELV+LI+ P RR G A RVFQA+RIAVNDELK E +L +
Sbjct: 171 RENKAIETTGELVELIKEGIPAP-ARRTGG-HPAKRVFQAIRIAVNDELKVFEEALESAI 228
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ + PGGR+ VI+FHSLEDRI K TF R I D
Sbjct: 229 EMVKPGGRVSVITFHSLEDRICKTTF------KRNSTTPQLPPGLPIIPDEFKPKL---- 278
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
K++T++PI PS E N R RSAKLR+ +K
Sbjct: 279 ------KLITRKPILPSDIELEENNRARSAKLRIAEK 309
>sp|B1HPY0|RSMH_LYSSC Ribosomal RNA small subunit methyltransferase H OS=Lysinibacillus
sphaericus (strain C3-41) GN=rsmH PE=3 SV=1
Length = 316
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 186/343 (54%), Gaps = 42/343 (12%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H V+L E +D + +VDCTLG AGHS +++ + I D D +A+ A+
Sbjct: 4 HTTVLLKETVDGLNIDPD-GVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIENAK 62
Query: 176 AHLNSLLHGQAHPHLKTHTFA-KNFRHIKSVLGQIDENILRSG---VDAILMDLGMSSMQ 231
L P+++ TF NFR++K E +L G VD IL DLG+SS Q
Sbjct: 63 IRLA--------PYIERVTFIHSNFRYLK-------EELLAHGFEQVDGILYDLGVSSPQ 107
Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
++ PERGFS D PLDMRMD A+L A +++N W ++ R+ YGEE + KI
Sbjct: 108 LDTPERGFSYHHDAPLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKI 167
Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
+AR + +TG+LV+LI+ P R+ G A R+FQA+RIAVNDEL E SL
Sbjct: 168 EEARKSAPIETTGQLVELIKEGIPAAARRKGG--HPAKRIFQAIRIAVNDELGAAEDSLV 225
Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIR--DDNINET 409
D + GGR+ VI+FHSLEDR+ K F ++A E N+ D++ T
Sbjct: 226 DAIDMINVGGRISVITFHSLEDRLCKTIF--------KEASSLPELPPNLPVIPDDMKPT 277
Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
K++T++PI PS EE +N R RSAKLRV++KI
Sbjct: 278 L----------KLITRKPIVPSDEELEVNNRARSAKLRVVEKI 310
>sp|Q97H81|RSMH_CLOAB Ribosomal RNA small subunit methyltransferase H OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=rsmH PE=3 SV=1
Length = 312
Score = 198 bits (504), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 183/343 (53%), Gaps = 37/343 (10%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172
+ +H+PV+L E ++ + +VDCTLG AGHSS I++ IG+D D AL
Sbjct: 2 EFNHVPVLLEETIENLNIKED-GIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALK 60
Query: 173 KARAHLNSLLHGQAHPHLKTHTFA-KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231
A L K TF NF +IK++L E + VD IL DLG+SS Q
Sbjct: 61 AASERLK---------EYKNLTFVHDNFSNIKNIL----EELKIDKVDGILADLGVSSYQ 107
Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
++ PERGFS + D PLDMRM+ + A D++N + + ++ +++ YGEE + I
Sbjct: 108 LDEPERGFSYMNDAPLDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFI 167
Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
V+ R +++T ELVD+I++ P + RRQG A R FQA+RI VN EL+ L ++
Sbjct: 168 VEKRSEEAINTTFELVDIIKAAIPA-KFRRQGP-HPAKRTFQAIRIEVNQELEILNKTIE 225
Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWI 411
D L GR+ +I+FHSLEDRIVK + R ++D + I
Sbjct: 226 DSVDKLKSEGRICIITFHSLEDRIVKNKY------------------RELQDPCMCPKDI 267
Query: 412 RQIIQGWNG--KILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ G KI+T++PI S+ E N R RSAKLRV +KI
Sbjct: 268 PMCVCGKKPKIKIITRKPIEASSYELEYNPRSRSAKLRVAEKI 310
>sp|B0UFI0|RSMH_METS4 Ribosomal RNA small subunit methyltransferase H OS=Methylobacterium
sp. (strain 4-46) GN=rsmH PE=3 SV=1
Length = 337
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 177/341 (51%), Gaps = 37/341 (10%)
Query: 114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAK 173
+ HIPV+L EV V VD T GA G+S A++ A P+L++ I +D DP+A+A
Sbjct: 4 APHIPVLLAEVRGVLRLGEGPGVVVDGTFGAGGYSRALLAADPDLRV-IAIDRDPTAVAA 62
Query: 174 ARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGV---DAILMDLGMSSM 230
R ++ G +D + R GV D +++D+G+SSM
Sbjct: 63 G--------------QELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSM 108
Query: 231 QVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNK 290
Q++ ERGFS DGPLDMRM+ A A D++N P+AE+ ++ +GEE +
Sbjct: 109 QLDRAERGFSFRADGPLDMRME-GAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARA 167
Query: 291 IVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSL 350
I++AR R + +TG L +++ V +R I ATR FQALRIAVNDEL L +L
Sbjct: 168 ILEARRRAPIATTGALAEIVAGV---VRAEPGSGIHPATRTFQALRIAVNDELGELNRAL 224
Query: 351 HACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETW 410
HA L PGGRL V++FHSLEDRIVKQ F + R +
Sbjct: 225 HAAERILRPGGRLAVVTFHSLEDRIVKQFF-------------SARSGRAVSASRHLPMA 271
Query: 411 IRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
R + + + ++TK P+ PS E N R RSAKLR ++
Sbjct: 272 ERPVPRSFT--LVTKGPVGPSEAEAAANPRARSAKLRAGER 310
>sp|O07104|RSMH_ENTFA Ribosomal RNA small subunit methyltransferase H OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=rsmH PE=3 SV=3
Length = 318
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 183/343 (53%), Gaps = 32/343 (9%)
Query: 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSAL 171
++ H V+L E +D + +VDCTLG AGHS ++ E D D AL
Sbjct: 3 EEFRHYTVLLKETVDGLQV-KPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKAL 61
Query: 172 AKARAHLNSLL-HGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229
A A+ L + GQ TF K NFR+IK L + + VD IL DLG+SS
Sbjct: 62 AHAKTRLQKYVDKGQV-------TFIKSNFRNIKEELAE--HGVFH--VDGILYDLGVSS 110
Query: 230 MQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQN 289
Q++ ERGFS D PLDMRMD A L A +++N++ +E+ ++ YGEE +
Sbjct: 111 PQLDEAERGFSYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAR 170
Query: 290 KIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESS 349
+I + R + + +TGELV++I++ P R+ G A R+FQA+RIAVNDEL +E S
Sbjct: 171 EIERVREKQPIETTGELVEIIKTAIPAPARRKGGH--PAKRIFQAIRIAVNDELGAVEES 228
Query: 350 LHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINET 409
L D LA GR+ VI+FHSLEDRIVK F +E ++D
Sbjct: 229 LEQAIDLLAKNGRISVITFHSLEDRIVKTMF---------------KEYSTVQDLPPGIP 273
Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ + Q K++T++PI PS E N R RSAKLR+ +KI
Sbjct: 274 VVPEEFQP-ELKVITRKPILPSDSELSENNRSRSAKLRIAEKI 315
>sp|C6DZJ8|RSMH_GEOSM Ribosomal RNA small subunit methyltransferase H OS=Geobacter sp.
(strain M21) GN=rsmH PE=3 SV=1
Length = 312
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 187/338 (55%), Gaps = 32/338 (9%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKA 174
HI V+ EVL S ++ +VD TLG AGH+ I+ A PE +L IG D D A+A A
Sbjct: 6 HISVLPDEVLQALSP-KSGGVYVDGTLGGAGHAGLILTASAPEGRL-IGFDRDEEAIAVA 63
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
R L S+ G + +NF I L +I + G+D ++DLG+SS Q++
Sbjct: 64 RQRL-SVFGG------RVRIIHRNFAGIAQALAEIGVD----GIDGFVLDLGVSSHQLDR 112
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
ERGFS + D PLDMRMD + A D++N+ P+AE+ R++ EYGEE + + IV+A
Sbjct: 113 DERGFSFMHDAPLDMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKA 172
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +T ELVD+I+ P + + + + ATR FQALRIAVN+ELK+LE L
Sbjct: 173 RDERPIETTLELVDVIKGAIP--KAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLL 230
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
L GGR VISFHSLEDRIVK+ F R A G E I
Sbjct: 231 SLLKQGGRGAVISFHSLEDRIVKEGF-------RAAATGC---------TCPKELPICVC 274
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ K++T++PIT E N R RSAKLRV++KI
Sbjct: 275 GRVPRFKLVTRKPITAGESEVAANPRSRSAKLRVVEKI 312
>sp|Q1WT95|RSMH_LACS1 Ribosomal RNA small subunit methyltransferase H OS=Lactobacillus
salivarius (strain UCC118) GN=rsmH PE=3 SV=1
Length = 314
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 178/337 (52%), Gaps = 28/337 (8%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
HI V+L E +D + + ++VDCTLG GHS I+ E D D +A+
Sbjct: 6 HITVLLNEAVDGLNI-KPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAI---- 60
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
+ N + + K + NFR+I L + NIL GVD IL DLG+SS Q +N
Sbjct: 61 -NFNKDKFEEENELGKINFIKSNFRNISEELNK--RNIL--GVDGILYDLGVSSPQFDNA 115
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQAR 295
+RGFS D PLDMRMD SL A D++N W ++ R+ YGEE + +I + R
Sbjct: 116 DRGFSYNYDAPLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVR 175
Query: 296 LRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFD 355
+ + +TG+LVDLI+ P + RR+G A + FQA+RIAVNDEL LE SL D
Sbjct: 176 QQTPIETTGQLVDLIKEAIPA-KARRKGG-HPAKKTFQAIRIAVNDELGALEESLEQALD 233
Query: 356 CLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQII 415
L PGGR+ VI+F SLEDR+VK F + L I D
Sbjct: 234 LLNPGGRISVITFQSLEDRLVKVMF-----KQKTSLPELPPGLPVIPDS----------- 277
Query: 416 QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
Q K++T++PI PS +E N R SAKLR+I+K+
Sbjct: 278 QKVEYKLITRKPIVPSEDEITHNNRAHSAKLRIIEKL 314
>sp|Q8KGC6|RSMH_CHLTE Ribosomal RNA small subunit methyltransferase H OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=rsmH
PE=3 SV=1
Length = 318
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 182/348 (52%), Gaps = 41/348 (11%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPEL---KLHIGVDVDPS 169
Q H PV+ E + + + I ++D TLG GHS ++R L L +G+D D
Sbjct: 4 QDYHEPVLARESVSLLVTLPGI--YIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTH 61
Query: 170 ALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSG-----VDAILMD 224
AL A L + NF +K ++ E ++R V L+D
Sbjct: 62 ALEAAGKKLGEFGD-------RRRLVRGNFGMVKELV----EPMMRGAGNGLPVMGFLLD 110
Query: 225 LGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNW 284
LG+SS Q++ PERGFS L DGPLDMRMDP L A DI+N + +A + ++ YGEE
Sbjct: 111 LGVSSFQIDTPERGFSYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLG 170
Query: 285 HLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELK 344
+ IV AR L +TGEL ++I++ P R+ IKT +R++QALRI VNDEL
Sbjct: 171 GRIARAIVSARSSAPLTTTGELAEVIRAACP----RKDLAIKTLSRIYQALRIEVNDELG 226
Query: 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDD 404
LE +L F+ L+ GGR VIS+HSLEDRIVK+ F + + D
Sbjct: 227 VLEQALEDGFELLSSGGRFAVISYHSLEDRIVKRFFAA----------------KTSADW 270
Query: 405 NINETWIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+R+ ++ ++ ++P+ +AEE N R RSA+LRVIQK+
Sbjct: 271 GPKGLALREPLKPAEAVLVVRKPLEATAEEISRNPRSRSARLRVIQKL 318
>sp|A8F758|RSMH_THELT Ribosomal RNA small subunit methyltransferase H OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=rsmH PE=3 SV=1
Length = 292
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 186/339 (54%), Gaps = 55/339 (16%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175
H+PVM+ EVL FS+ R + F+DCT+GA GHS AI+ + + + IG+DVD L+ A+
Sbjct: 5 HVPVMVKEVLSYFSNLRGV--FLDCTVGAGGHSEAIL-ENIKGSVVIGIDVDEEILSVAK 61
Query: 176 AHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235
L + L T+ + R VL Q+ V+ I+MDLG+S++Q+
Sbjct: 62 QRLKKY-ESEGRAKLLKATYVEAQR----VLSQLGVK----AVNGIIMDLGVSTLQLMKG 112
Query: 236 ERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWH-LLQNKIVQA 294
ERGF+ DGPLDMRMD L A DI+N W + ++ R+ EYGEE + + IV+
Sbjct: 113 ERGFAFSSDGPLDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRYAGRIARFIVKN 172
Query: 295 RLRGGLHSTGELVDLIQSVTPGM--RGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
R + +T +LV++I P R RR+ + ATRVFQA+RIAVN+EL+ L + L
Sbjct: 173 R---PVETTAKLVEVIARALPEKERRFRRRHF---ATRVFQAIRIAVNNELENLRNFLVQ 226
Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIR 412
D L GR+ VISFHSLEDRIVK+ F SI +EL
Sbjct: 227 VPDILNQNGRIIVISFHSLEDRIVKEAFRSI------------QEL-------------- 260
Query: 413 QIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQK 451
+LT++P+ PS EE R N + RSAK+R+ ++
Sbjct: 261 --------DVLTRKPVRPSLEEVRENPKARSAKMRIAER 291
>sp|Q3AAD7|RSMH_CARHZ Ribosomal RNA small subunit methyltransferase H OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rsmH PE=3
SV=1
Length = 311
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 183/343 (53%), Gaps = 39/343 (11%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAII-RAHPELKLHIGVDVDPSAL 171
+ SH+PV+L E ++ + + +VD TLG GHS I+ RA + +G+D D AL
Sbjct: 2 EFSHVPVLLNETIEHLNL-KAGGVYVDATLGGGGHSEEILKRADCRV---VGLDQDEDAL 57
Query: 172 AKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231
A L G +K+ NFR+I+ V+ ++ + VD +LMDLG+SS Q
Sbjct: 58 NHAAKRLAPF--GDRFIPVKS-----NFRNIRKVVYRLGLD----AVDGVLMDLGVSSFQ 106
Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
++NP +GFS DGPLDMRMDPQ A D++N++P+ E+ R+ EYGEE + I
Sbjct: 107 LDNPLKGFSFQHDGPLDMRMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAI 166
Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
V+ R + ST EL + I P + RR+ A RVFQA+RI VNDEL +LE L
Sbjct: 167 VKRREKKPFTSTLELAEEIIRAVPA-KARREKH--PAKRVFQAIRIEVNDELSSLEEGLV 223
Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWI 411
+ L PGGR+ VI+FHSLEDR+VK F R + I
Sbjct: 224 GAVEVLKPGGRIVVITFHSLEDRLVKNFF------------------RREENPCICPKDF 265
Query: 412 RQIIQGWNG--KILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ G K++TK+P+ PS EE N R SAKLR +K+
Sbjct: 266 PMCVCGKKPRLKVITKKPLVPSEEEIEKNRRAHSAKLRAAEKL 308
>sp|B8CWI8|RSMH_HALOH Ribosomal RNA small subunit methyltransferase H OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmH PE=3
SV=1
Length = 311
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 175/340 (51%), Gaps = 35/340 (10%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
H PV+L E LD ++D TLG GH+ II+A + L IG+D D A+
Sbjct: 3 EHKPVLLKESLDYLKCKEN-GIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIESV 61
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+ L + T NF +I +L Q NI VD +L DLG+SS Q +N
Sbjct: 62 KKRLKK--------YSSLRTVHDNFTNIPFILEQF--NI--KAVDGMLFDLGVSSPQFDN 109
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
PERGFS +GPLDMRMD L AE I+N++ E+ + +EYGEE + N I+++
Sbjct: 110 PERGFSYRKEGPLDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKS 169
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +T +L +I+ P R+ G A R FQALRIA NDEL L+ +++
Sbjct: 170 RQHKPIKTTLQLTTIIKDAIPASARRKGGH--PARRTFQALRIATNDELNILKKTINHVV 227
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
L PGGR+ +ISFHSLEDRIVK+TF R + D + +
Sbjct: 228 KFLKPGGRICIISFHSLEDRIVKKTF------------------RELARDCVCPPDFPEC 269
Query: 415 I--QGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ KI+TK+P+ P E N R RSA+LRV +++
Sbjct: 270 VCDHKRKLKIITKKPVKPGENEVENNPRARSARLRVAERV 309
>sp|Q9ZCY2|RSMH_RICPR Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
prowazekii (strain Madrid E) GN=rsmH PE=3 SV=1
Length = 306
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 38/338 (11%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKA 174
HIPVML EVL V + + S++DCT GA G+S+AI+ + + + +D DP+ +
Sbjct: 5 HIPVMLSEVLAVLAP-KGYESYLDCTFGAGGYSNAILNSCYCSV---TSLDRDPNVIESV 60
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
+G+ +KT+ FA +FR +K D I+MDLG+SSMQ++
Sbjct: 61 EKIKQD--YGERFNFIKTN-FADSFRKLK-----------HKKFDGIVMDLGVSSMQLDI 106
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
+RGFS L DGPLDMRM Q AE+ +N+ + E+ V+ +YG ES + IV+
Sbjct: 107 ADRGFSFLYDGPLDMRMSVQG-FSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEY 165
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + ST +L ++++ G R+G I +AT+ FQA+RI +N+EL+ LE L
Sbjct: 166 RKTARIDSTRKLAEIVRYSI----GFRKGKIDSATKTFQAIRIYINNELEELEQFLANVK 221
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQI 414
+ L GRL V+SFHSLEDRIVK F +E++E + +D+ I+
Sbjct: 222 NILKKDGRLVVVSFHSLEDRIVKNFF-------KENSEKQVARSKYAKDE------IKID 268
Query: 415 IQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
W KI+T + +TPS++E RLN R RSAKLR +KI
Sbjct: 269 PNKW-LKIITPKVLTPSSQEIRLNVRARSAKLRAAKKI 305
>sp|B2TS30|RSMH_CLOBB Ribosomal RNA small subunit methyltransferase H OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=rsmH PE=3 SV=1
Length = 310
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 180/345 (52%), Gaps = 41/345 (11%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172
+ HI V+L E LD +VDCTLG AGHSS I+ L IG+D D AL
Sbjct: 2 EFKHISVLLNECLDALDIKDN-GIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60
Query: 173 KARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQV 232
A+ L + + H+ NF I ++L +D VD ILMDLG+SS Q+
Sbjct: 61 AAKERLKRFENVKY-----VHS---NFYDIDNILQNLD----IPKVDGILMDLGVSSYQL 108
Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
+ RGFS + D PLDMRM+ A +I+N + + E+ +++R YGEE + N IV
Sbjct: 109 DEGARGFSYMKDAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIV 168
Query: 293 QARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
R + +T ELVD+I++ P + RR+G A R FQA+RI VN ELK L ++
Sbjct: 169 NRRSDKPIETTMELVDIIKAAIPA-KARREGP-HPAKRTFQAIRIEVNSELKILNQTIED 226
Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIR 412
+ L PGGR+ +I+FHSLEDRIVK F R+ N T R
Sbjct: 227 GVNRLKPGGRMAIITFHSLEDRIVKLKF---------------------RELNDPCTCPR 265
Query: 413 QIIQGWNGK-----ILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ GK +++++ I P+ EE N R RSAKLR+I+K+
Sbjct: 266 EFPMCICGKKPSVRLISRKGIEPTKEEVEENPRSRSAKLRIIEKL 310
>sp|Q1RJ43|RSMH_RICBR Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
bellii (strain RML369-C) GN=rsmH PE=3 SV=1
Length = 305
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 185/343 (53%), Gaps = 42/343 (12%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHI-GVDVDPSAL 171
Q HIPVML E+L F + + S++DCT GA G+S A++ ++ +D DP+ +
Sbjct: 2 QQPHIPVMLNEMLK-FLAPKAGESYLDCTFGAGGYSKALLE---NCDCYVTALDRDPNVI 57
Query: 172 AKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231
KA H + F +++ G + D I++DLG+SSMQ
Sbjct: 58 KKAEEI--------------KHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQ 103
Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
++ P+RGFS L DGPLDMRM Q L AE+ +N+ + ++ V+ +YG+E+ + KI
Sbjct: 104 LDIPDRGFSFLHDGPLDMRMSGQG-LSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKI 162
Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
V+ R + STG+L D+++S G R+G I AT+ FQA+RI +N+EL LE L
Sbjct: 163 VEVRKAARIDSTGKLADIVRSCI----GFRKGKIDPATKTFQAIRIYINNELGELEQFLA 218
Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNI--NET 409
+ L GRL V+SFHSLEDRIVK F +E++E + ++D + +
Sbjct: 219 NVKNILKKDGRLVVVSFHSLEDRIVKNFF-------KENSEKPVARSKYAKEDIMLNPDK 271
Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
W+ KI+T + PS +E LN R RSAKLR +KI
Sbjct: 272 WL---------KIITNKAEIPSDKEISLNVRARSAKLRAAKKI 305
>sp|B2V4W0|RSMH_CLOBA Ribosomal RNA small subunit methyltransferase H OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=rsmH PE=3
SV=1
Length = 310
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 180/345 (52%), Gaps = 41/345 (11%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172
+ HI V+L E LD +VDCTLG AGHSS I+ L IG+D D AL
Sbjct: 2 EFKHISVLLNECLDALDIKDN-GIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALK 60
Query: 173 KARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQV 232
A+ L + + H+ NF I ++L +D VD ILMDLG+SS Q+
Sbjct: 61 AAKERLKRFENVKY-----VHS---NFYDIDNILQNLD----IPKVDGILMDLGVSSYQL 108
Query: 233 NNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIV 292
+ RGFS + D PLDMRM+ A +I+N + + E+ +++R YGEE + N IV
Sbjct: 109 DEGARGFSYMKDAPLDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIV 168
Query: 293 QARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352
R + +T ELVD+I++ P + RR+G A R FQA+RI VN ELK L ++
Sbjct: 169 NRRSDKPIETTMELVDIIKAAIPA-KARREGP-HPAKRTFQAIRIEVNSELKILNQTIED 226
Query: 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIR 412
+ L PGGR+ +I+FHSLEDRIVK F R+ N T R
Sbjct: 227 GVNRLKPGGRMAIITFHSLEDRIVKLKF---------------------RELNDPCTCPR 265
Query: 413 QIIQGWNGK-----ILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ GK +++++ I P+ EE N R RSAKLR+I+K+
Sbjct: 266 EFPMCICGKKPSVRLVSRKGIEPTKEEVEENPRSRSAKLRIIEKL 310
>sp|A6TS69|RSMH1_ALKMQ Ribosomal RNA small subunit methyltransferase H 1 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsmH1 PE=3 SV=1
Length = 311
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 186/340 (54%), Gaps = 34/340 (10%)
Query: 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174
H V+L E ++ +VD TLG AGHS I++ + L IG+D D +AL+ A
Sbjct: 4 EHTSVLLKECIEALDIKEN-GIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALSAA 62
Query: 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234
L HG K NF ++ +L EN+ + +D +L+DLG+SS Q++
Sbjct: 63 GERLEE--HGT-----KVKLVHDNFHNLDKIL----ENLEITTIDGVLLDLGVSSHQLDE 111
Query: 235 PERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQA 294
ERGFS + D PLDMRMD ++ A DI+N + + E+ R+++EYGE+ + IVQ
Sbjct: 112 RERGFSYMQDAPLDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQE 171
Query: 295 RLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACF 354
R + +T ++V++I+ P +G R+ A R FQA+RI VN EL+ +E+++ A
Sbjct: 172 RELAPIETTHQMVEVIKKAVP--KGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAA 229
Query: 355 DCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNI--NETWIR 412
+ PGGR+ +ISFHSLEDRIVK F R +++ + + +
Sbjct: 230 KHMKPGGRIAIISFHSLEDRIVKNVF------------------RRLQNPCVCPPQFPVC 271
Query: 413 QIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
+ + KI+T++PI PS E +N R RSAKLRV +++
Sbjct: 272 KCEKEQMVKIVTRKPILPSEAELEVNPRSRSAKLRVAERV 311
>sp|A8GVV6|RSMH_RICB8 Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
bellii (strain OSU 85-389) GN=rsmH PE=3 SV=1
Length = 305
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 184/343 (53%), Gaps = 42/343 (12%)
Query: 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHI-GVDVDPSAL 171
Q HIPVML E+L F + + S++DCT GA G+S A++ ++ +D DP+ +
Sbjct: 2 QQPHIPVMLNEMLK-FLAPKAGESYLDCTFGAGGYSKALLE---NCDCYVTALDRDPNVI 57
Query: 172 AKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231
KA H + F +++ G + D I++DLG+SSMQ
Sbjct: 58 KKAEEI--------------KHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQ 103
Query: 232 VNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291
++ P+RGFS L DGPLDMRM Q L AE+ +N+ + ++ V+ +YG+E+ + KI
Sbjct: 104 LDIPDRGFSFLHDGPLDMRMSGQG-LSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKI 162
Query: 292 VQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351
V+ R + STG+L D++ S G R+G I AT+ FQA+RI +N+EL LE L
Sbjct: 163 VEVRKAARIDSTGKLADIVHSCI----GFRKGKIDPATKTFQAIRIYINNELGELEQFLA 218
Query: 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNI--NET 409
+ L GRL V+SFHSLEDRIVK F +E++E + ++D + +
Sbjct: 219 NVKNILKKDGRLVVVSFHSLEDRIVKNFF-------KENSEKPVARSKYAKEDIMLNPDK 271
Query: 410 WIRQIIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
W+ KI+T + PS +E LN R RSAKLR +KI
Sbjct: 272 WL---------KIITNKAEIPSDKEISLNVRARSAKLRAAKKI 305
>sp|A5UZS9|RSMH_ROSS1 Ribosomal RNA small subunit methyltransferase H OS=Roseiflexus sp.
(strain RS-1) GN=rsmH PE=3 SV=1
Length = 313
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 185/339 (54%), Gaps = 51/339 (15%)
Query: 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKA 174
H PV+L EV+ R ++D T+G GH++AI+ A P+ +L +G+D DP+ALA A
Sbjct: 23 HTPVLLAEVVAGLLP-RPGGRYIDGTVGGGGHAAAILEASSPDGRL-LGIDCDPAALAAA 80
Query: 175 RAHLNSLLHGQAHPHLKTHTFAK-NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVN 233
A + P+ T + +FR I GQ+ V+ +++DLG+SS Q++
Sbjct: 81 AA--------RLAPYGDRVTLVRGSFREI----GQLAATSGFVQVEGVVLDLGVSSYQLD 128
Query: 234 NPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQ 293
PERGFS PLDMR+DP A + A ++N+ P+ E+ ++ YGEE + IV+
Sbjct: 129 TPERGFSFQAHAPLDMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVE 188
Query: 294 ARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC 353
AR R + +T EL ++ G RGR I ATR FQALRIAVN+EL +LE++L
Sbjct: 189 ARQRKPVTTTDELAAIVTRALGGQRGR----IHPATRTFQALRIAVNNELASLEAALPQI 244
Query: 354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQ 413
D LAPGGR+ +I+FHSLEDRIVK T +R
Sbjct: 245 IDLLAPGGRMAIIAFHSLEDRIVKHT-------------------------------LRA 273
Query: 414 IIQGWNGKILTKRPITPSAEEERLNCRCRSAKLRVIQKI 452
Q I+T++P+ S EE+R N R RSA+LRV +++
Sbjct: 274 EAQAGRLHIITRKPVEASIEEQRANPRSRSARLRVAERV 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,437,423
Number of Sequences: 539616
Number of extensions: 6773757
Number of successful extensions: 21236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 17750
Number of HSP's gapped (non-prelim): 1275
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)