Query 012954
Match_columns 452
No_of_seqs 155 out of 1388
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0275 Predicted S-adenosylme 100.0 1E-117 3E-122 879.5 28.9 310 112-452 3-312 (314)
2 PF01795 Methyltransf_5: MraW 100.0 8E-116 2E-120 875.7 20.5 308 114-452 2-310 (310)
3 TIGR00006 S-adenosyl-methyltra 100.0 5E-114 1E-118 861.9 33.4 305 113-452 1-305 (305)
4 PRK00050 16S rRNA m(4)C1402 me 100.0 9E-108 2E-112 814.8 33.5 295 114-452 1-295 (296)
5 KOG2782 Putative SAM dependent 100.0 8.7E-81 1.9E-85 593.5 12.6 283 88-384 3-285 (303)
6 PF06962 rRNA_methylase: Putat 98.8 3.6E-09 7.9E-14 96.3 4.8 57 160-228 1-57 (140)
7 TIGR00446 nop2p NOL1/NOP2/sun 98.5 5.8E-06 1.3E-10 81.5 18.0 108 99-228 44-151 (264)
8 PF13659 Methyltransf_26: Meth 98.4 2.6E-06 5.5E-11 72.0 10.2 83 134-230 1-83 (117)
9 TIGR00080 pimt protein-L-isoas 98.0 2.4E-05 5.1E-10 74.5 9.3 93 117-225 62-154 (215)
10 PF05175 MTS: Methyltransferas 98.0 4.5E-05 9.8E-10 70.2 10.1 77 133-226 31-107 (170)
11 TIGR03533 L3_gln_methyl protei 98.0 0.00032 7E-09 70.2 16.3 89 119-224 107-196 (284)
12 PRK14903 16S rRNA methyltransf 97.9 6.9E-05 1.5E-09 79.3 11.4 89 127-230 232-320 (431)
13 TIGR01177 conserved hypothetic 97.9 0.00014 3E-09 73.8 13.1 90 119-227 169-258 (329)
14 PRK14902 16S rRNA methyltransf 97.9 7.9E-05 1.7E-09 78.7 10.4 87 127-228 245-331 (444)
15 PF09445 Methyltransf_15: RNA 97.9 4E-05 8.7E-10 71.6 7.3 133 135-314 1-136 (163)
16 PRK13944 protein-L-isoaspartat 97.8 8.9E-05 1.9E-09 70.3 9.5 96 117-227 57-152 (205)
17 TIGR01934 MenG_MenH_UbiE ubiqu 97.8 0.00029 6.3E-09 65.5 12.7 89 119-225 26-114 (223)
18 PRK11805 N5-glutamine S-adenos 97.8 0.00064 1.4E-08 69.0 16.0 90 119-224 119-208 (307)
19 PRK13942 protein-L-isoaspartat 97.8 0.0001 2.2E-09 70.5 9.2 96 115-226 59-154 (212)
20 PF12847 Methyltransf_18: Meth 97.8 0.00016 3.5E-09 60.3 9.2 78 133-225 1-78 (112)
21 PRK00121 trmB tRNA (guanine-N( 97.7 0.00022 4.7E-09 67.7 10.3 113 95-225 6-119 (202)
22 TIGR02752 MenG_heptapren 2-hep 97.7 0.0002 4.3E-09 68.0 10.1 90 122-227 35-124 (231)
23 TIGR02469 CbiT precorrin-6Y C5 97.7 0.00023 4.9E-09 60.0 9.3 89 121-225 8-96 (124)
24 PRK00107 gidB 16S rRNA methylt 97.7 0.00057 1.2E-08 64.8 12.2 74 133-223 45-118 (187)
25 PRK00377 cbiT cobalt-precorrin 97.7 0.00036 7.8E-09 65.6 10.7 96 116-225 20-119 (198)
26 PRK14901 16S rRNA methyltransf 97.7 0.00023 5E-09 75.1 10.2 93 125-229 245-337 (434)
27 PRK14968 putative methyltransf 97.6 0.0031 6.8E-08 57.2 15.3 85 125-227 16-100 (188)
28 PF13847 Methyltransf_31: Meth 97.5 0.00043 9.3E-09 61.9 8.1 80 133-226 3-82 (152)
29 PTZ00338 dimethyladenosine tra 97.5 0.00056 1.2E-08 69.2 9.7 97 112-228 16-112 (294)
30 PRK13943 protein-L-isoaspartat 97.5 0.0005 1.1E-08 70.5 9.1 98 116-229 64-161 (322)
31 PRK07402 precorrin-6B methylas 97.4 0.0011 2.5E-08 61.9 10.7 76 117-200 21-100 (196)
32 PRK10901 16S rRNA methyltransf 97.4 0.00079 1.7E-08 70.9 10.5 90 124-229 236-325 (427)
33 PRK11933 yebU rRNA (cytosine-C 97.4 0.00096 2.1E-08 71.7 10.8 112 99-229 84-195 (470)
34 PF01135 PCMT: Protein-L-isoas 97.4 0.00058 1.2E-08 66.0 7.9 96 117-229 57-153 (209)
35 PRK14904 16S rRNA methyltransf 97.4 0.0011 2.3E-08 70.4 10.6 87 126-229 244-330 (445)
36 TIGR00563 rsmB ribosomal RNA s 97.4 0.001 2.3E-08 70.0 10.2 94 123-230 229-322 (426)
37 PRK13168 rumA 23S rRNA m(5)U19 97.3 0.0012 2.5E-08 69.9 10.3 96 117-227 282-377 (443)
38 PLN02781 Probable caffeoyl-CoA 97.2 0.0021 4.5E-08 62.7 10.2 101 116-225 51-152 (234)
39 PF13649 Methyltransf_25: Meth 97.2 0.0013 2.8E-08 54.8 7.5 71 137-223 1-73 (101)
40 PRK08287 cobalt-precorrin-6Y C 97.2 0.0038 8.2E-08 57.9 11.0 89 116-223 11-103 (187)
41 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0027 5.8E-08 63.8 10.5 91 126-230 79-169 (283)
42 COG2226 UbiE Methylase involve 97.1 0.0024 5.1E-08 63.2 9.2 92 119-227 38-129 (238)
43 COG2242 CobL Precorrin-6B meth 97.1 0.0037 8.1E-08 59.8 10.1 92 117-226 15-111 (187)
44 PF01209 Ubie_methyltran: ubiE 97.1 0.0022 4.7E-08 62.7 8.7 92 121-228 36-127 (233)
45 PRK11036 putative S-adenosyl-L 97.1 0.0034 7.3E-08 61.2 10.0 87 122-226 35-121 (255)
46 TIGR03534 RF_mod_PrmC protein- 97.1 0.0037 8E-08 59.6 9.9 93 119-230 75-167 (251)
47 TIGR00479 rumA 23S rRNA (uraci 97.1 0.0036 7.9E-08 65.7 10.6 93 118-225 278-370 (431)
48 PRK00517 prmA ribosomal protei 97.0 0.016 3.5E-07 56.6 14.2 47 132-180 118-164 (250)
49 PLN02233 ubiquinone biosynthes 97.0 0.0038 8.2E-08 61.6 9.8 100 123-237 64-163 (261)
50 PRK00312 pcm protein-L-isoaspa 97.0 0.0033 7.2E-08 59.4 8.8 92 116-226 62-153 (212)
51 PRK14967 putative methyltransf 97.0 0.0062 1.4E-07 58.3 10.5 93 118-230 22-114 (223)
52 PF08704 GCD14: tRNA methyltra 97.0 0.0032 6.9E-08 62.6 8.6 106 117-234 25-130 (247)
53 PRK03522 rumB 23S rRNA methylu 97.0 0.0042 9.1E-08 62.8 9.7 87 120-224 161-247 (315)
54 TIGR00091 tRNA (guanine-N(7)-) 96.9 0.0053 1.1E-07 57.7 9.6 81 133-226 16-96 (194)
55 PRK08317 hypothetical protein; 96.9 0.0053 1.1E-07 57.2 9.3 92 120-228 7-98 (241)
56 PRK00216 ubiE ubiquinone/menaq 96.9 0.0048 1E-07 57.9 9.0 96 116-226 35-130 (239)
57 PRK11188 rrmJ 23S rRNA methylt 96.9 0.0041 8.8E-08 59.6 8.6 85 121-226 39-126 (209)
58 COG0144 Sun tRNA and rRNA cyto 96.9 0.0027 6E-08 65.7 7.8 110 102-230 132-242 (355)
59 PRK14121 tRNA (guanine-N(7)-)- 96.9 0.0064 1.4E-07 64.1 10.3 95 116-225 104-200 (390)
60 smart00650 rADc Ribosomal RNA 96.8 0.0064 1.4E-07 55.6 9.0 86 121-227 2-87 (169)
61 KOG2730 Methylase [General fun 96.8 0.0015 3.3E-08 64.3 5.0 98 102-207 61-160 (263)
62 TIGR00740 methyltransferase, p 96.7 0.009 1.9E-07 57.5 9.7 66 132-202 52-118 (239)
63 PRK15451 tRNA cmo(5)U34 methyl 96.7 0.0067 1.5E-07 59.1 8.6 80 132-227 55-135 (247)
64 TIGR02085 meth_trns_rumB 23S r 96.7 0.0077 1.7E-07 62.6 9.5 87 120-224 221-307 (374)
65 TIGR03704 PrmC_rel_meth putati 96.7 0.0067 1.5E-07 59.7 8.6 93 119-228 72-164 (251)
66 PRK10909 rsmD 16S rRNA m(2)G96 96.7 0.01 2.2E-07 57.0 9.5 91 120-226 40-130 (199)
67 PLN02244 tocopherol O-methyltr 96.6 0.012 2.5E-07 60.4 9.7 98 120-235 101-202 (340)
68 PRK14896 ksgA 16S ribosomal RN 96.6 0.011 2.3E-07 58.3 8.9 93 112-227 9-101 (258)
69 cd02440 AdoMet_MTases S-adenos 96.6 0.011 2.4E-07 46.0 7.4 78 137-230 2-79 (107)
70 PRK00274 ksgA 16S ribosomal RN 96.5 0.008 1.7E-07 59.7 7.7 93 113-227 23-115 (272)
71 PRK01683 trans-aconitate 2-met 96.5 0.012 2.7E-07 56.9 8.9 86 118-226 17-102 (258)
72 COG2519 GCD14 tRNA(1-methylade 96.5 0.012 2.7E-07 58.7 8.8 90 121-226 83-172 (256)
73 PTZ00146 fibrillarin; Provisio 96.5 0.014 3.1E-07 59.4 9.2 81 131-225 130-210 (293)
74 PRK11524 putative methyltransf 96.4 0.0069 1.5E-07 60.5 6.9 63 112-180 188-252 (284)
75 PRK09328 N5-glutamine S-adenos 96.4 0.019 4.2E-07 55.7 9.8 93 119-229 95-187 (275)
76 TIGR02021 BchM-ChlM magnesium 96.4 0.018 3.8E-07 54.7 9.3 74 120-201 41-115 (219)
77 TIGR00536 hemK_fam HemK family 96.4 0.017 3.7E-07 57.6 9.5 75 119-199 100-174 (284)
78 PLN02476 O-methyltransferase 96.4 0.025 5.4E-07 57.2 10.6 101 117-226 99-203 (278)
79 COG2265 TrmA SAM-dependent met 96.4 0.014 3E-07 62.3 9.0 97 112-224 273-369 (432)
80 COG2263 Predicted RNA methylas 96.4 0.016 3.4E-07 56.0 8.3 84 133-239 45-129 (198)
81 PRK14966 unknown domain/N5-glu 96.3 0.014 3E-07 62.3 8.7 87 119-224 240-326 (423)
82 PRK04266 fibrillarin; Provisio 96.3 0.027 5.8E-07 55.0 10.1 74 118-201 55-131 (226)
83 PRK10742 putative methyltransf 96.3 0.023 4.9E-07 56.8 9.7 94 124-229 78-176 (250)
84 PRK11873 arsM arsenite S-adeno 96.3 0.016 3.5E-07 56.7 8.7 80 131-225 75-154 (272)
85 KOG2915 tRNA(1-methyladenosine 96.3 0.015 3.2E-07 59.0 8.0 96 117-225 90-185 (314)
86 COG4122 Predicted O-methyltran 96.2 0.039 8.4E-07 54.1 10.6 110 109-229 32-144 (219)
87 TIGR00138 gidB 16S rRNA methyl 96.2 0.023 4.9E-07 53.4 8.7 75 133-224 42-116 (181)
88 PF01170 UPF0020: Putative RNA 96.2 0.019 4.1E-07 53.8 8.2 84 130-227 25-116 (179)
89 COG4123 Predicted O-methyltran 96.2 0.02 4.4E-07 57.1 8.5 92 116-224 31-122 (248)
90 TIGR03438 probable methyltrans 96.1 0.042 9.1E-07 55.4 10.5 68 133-205 63-130 (301)
91 PF02390 Methyltransf_4: Putat 96.1 0.039 8.4E-07 52.6 9.6 90 117-225 6-96 (195)
92 PRK11207 tellurite resistance 96.0 0.034 7.3E-07 52.5 8.8 54 123-180 21-74 (197)
93 PF05958 tRNA_U5-meth_tr: tRNA 96.0 0.018 3.8E-07 59.6 7.4 70 118-198 183-252 (352)
94 TIGR00406 prmA ribosomal prote 96.0 0.034 7.3E-07 55.7 9.1 86 120-225 148-233 (288)
95 COG2518 Pcm Protein-L-isoaspar 96.0 0.045 9.8E-07 53.4 9.5 125 95-238 29-165 (209)
96 TIGR00537 hemK_rel_arch HemK-r 95.9 0.04 8.8E-07 50.7 8.7 84 119-227 9-92 (179)
97 PRK14103 trans-aconitate 2-met 95.9 0.027 6E-07 54.8 8.0 94 115-235 12-105 (255)
98 PRK04457 spermidine synthase; 95.9 0.059 1.3E-06 53.5 10.0 79 133-225 66-144 (262)
99 PF01596 Methyltransf_3: O-met 95.8 0.042 9.1E-07 53.0 8.5 98 120-226 32-130 (205)
100 TIGR00438 rrmJ cell division p 95.8 0.043 9.4E-07 51.0 8.2 84 121-225 20-106 (188)
101 TIGR00755 ksgA dimethyladenosi 95.8 0.037 7.9E-07 54.2 8.0 79 112-202 9-87 (253)
102 PLN03075 nicotianamine synthas 95.7 0.05 1.1E-06 55.5 9.0 78 133-224 123-202 (296)
103 PLN02336 phosphoethanolamine N 95.7 0.051 1.1E-06 57.6 9.3 94 121-235 255-348 (475)
104 PRK01544 bifunctional N5-gluta 95.7 0.064 1.4E-06 58.3 10.2 81 134-230 139-219 (506)
105 PLN02589 caffeoyl-CoA O-methyl 95.7 0.063 1.4E-06 53.3 9.3 103 115-224 56-163 (247)
106 PRK06922 hypothetical protein; 95.6 0.036 7.8E-07 62.1 8.3 78 133-225 418-495 (677)
107 PRK05031 tRNA (uracil-5-)-meth 95.6 0.082 1.8E-06 54.9 10.3 72 119-201 194-265 (362)
108 PF02475 Met_10: Met-10+ like- 95.6 0.087 1.9E-06 50.8 9.8 98 118-231 86-183 (200)
109 PRK05785 hypothetical protein; 95.6 0.022 4.8E-07 55.1 5.7 158 121-313 38-203 (226)
110 TIGR02987 met_A_Alw26 type II 95.5 0.13 2.7E-06 55.7 11.9 92 135-236 33-131 (524)
111 PF04445 SAM_MT: Putative SAM- 95.5 0.023 5E-07 56.2 5.6 80 135-225 77-159 (234)
112 TIGR02143 trmA_only tRNA (urac 95.5 0.08 1.7E-06 54.8 9.7 76 116-202 182-257 (353)
113 PTZ00098 phosphoethanolamine N 95.4 0.079 1.7E-06 52.4 9.1 83 121-223 41-123 (263)
114 PF01728 FtsJ: FtsJ-like methy 95.4 0.11 2.5E-06 47.7 9.5 49 121-169 9-59 (181)
115 TIGR00095 RNA methyltransferas 95.4 0.1 2.2E-06 49.4 9.4 95 121-228 37-132 (189)
116 PF02353 CMAS: Mycolic acid cy 95.3 0.083 1.8E-06 53.0 8.9 76 120-203 50-125 (273)
117 PRK06202 hypothetical protein; 95.2 0.047 1E-06 52.3 6.6 48 132-179 59-109 (232)
118 PHA03411 putative methyltransf 95.2 0.053 1.1E-06 55.0 7.0 116 88-229 17-138 (279)
119 PRK07580 Mg-protoporphyrin IX 95.1 0.11 2.4E-06 48.9 8.8 72 120-199 48-121 (230)
120 TIGR00477 tehB tellurite resis 95.1 0.13 2.8E-06 48.5 9.1 56 121-180 19-74 (195)
121 PF03602 Cons_hypoth95: Conser 95.1 0.096 2.1E-06 49.6 8.3 96 119-227 26-124 (183)
122 PRK15128 23S rRNA m(5)C1962 me 95.1 0.14 3.1E-06 54.0 10.3 82 133-225 220-301 (396)
123 PF06325 PrmA: Ribosomal prote 95.1 0.07 1.5E-06 54.4 7.6 58 120-182 150-208 (295)
124 COG2890 HemK Methylase of poly 95.0 0.092 2E-06 52.8 8.3 87 120-227 99-186 (280)
125 TIGR02716 C20_methyl_CrtF C-20 95.0 0.11 2.4E-06 52.0 8.8 73 120-200 137-209 (306)
126 PF03291 Pox_MCEL: mRNA cappin 94.9 0.053 1.1E-06 56.0 6.4 63 117-181 46-108 (331)
127 KOG3420 Predicted RNA methylas 94.9 0.032 6.9E-07 52.3 4.2 69 112-182 27-95 (185)
128 PRK09489 rsmC 16S ribosomal RN 94.8 0.15 3.2E-06 52.8 9.2 56 124-181 188-243 (342)
129 PF08241 Methyltransf_11: Meth 94.8 0.1 2.2E-06 41.3 6.4 68 138-225 1-68 (95)
130 PF01555 N6_N4_Mtase: DNA meth 94.7 0.06 1.3E-06 49.8 5.7 59 112-176 171-231 (231)
131 COG2264 PrmA Ribosomal protein 94.6 0.094 2E-06 53.7 7.1 59 117-180 148-207 (300)
132 TIGR02072 BioC biotin biosynth 94.6 0.12 2.5E-06 48.4 7.3 88 120-227 19-108 (240)
133 PRK00811 spermidine synthase; 94.3 0.26 5.5E-06 49.5 9.4 95 112-225 64-158 (283)
134 COG0220 Predicted S-adenosylme 94.1 0.27 5.8E-06 48.4 8.8 78 135-225 50-127 (227)
135 PRK12335 tellurite resistance 94.1 0.24 5.2E-06 49.4 8.7 55 122-180 110-164 (287)
136 PRK15001 SAM-dependent 23S rib 94.1 0.35 7.6E-06 51.0 10.3 89 124-227 220-308 (378)
137 PRK13699 putative methylase; P 94.1 0.15 3.3E-06 49.7 7.1 64 112-181 143-208 (227)
138 PRK11705 cyclopropane fatty ac 94.0 0.29 6.2E-06 51.4 9.4 56 121-179 156-211 (383)
139 TIGR02081 metW methionine bios 94.0 0.18 3.9E-06 47.1 7.1 51 121-176 4-54 (194)
140 PLN02490 MPBQ/MSBQ methyltrans 93.8 0.25 5.4E-06 51.4 8.4 90 117-225 97-186 (340)
141 PLN02396 hexaprenyldihydroxybe 93.8 0.32 6.9E-06 50.1 9.1 84 133-235 131-214 (322)
142 TIGR03587 Pse_Me-ase pseudamin 93.7 0.19 4.1E-06 48.1 6.9 55 120-178 33-87 (204)
143 KOG1663 O-methyltransferase [S 93.7 0.37 8.1E-06 47.9 9.0 82 134-224 74-156 (237)
144 PF03848 TehB: Tellurite resis 93.6 0.34 7.4E-06 46.6 8.5 55 122-180 20-74 (192)
145 PRK15068 tRNA mo(5)U34 methylt 93.6 0.35 7.7E-06 49.5 9.0 84 122-223 112-195 (322)
146 PRK10258 biotin biosynthesis p 93.5 0.22 4.7E-06 48.1 7.1 55 120-178 30-84 (251)
147 TIGR00308 TRM1 tRNA(guanine-26 93.5 0.35 7.5E-06 50.9 9.0 80 135-229 46-125 (374)
148 PRK05134 bifunctional 3-demeth 93.4 0.51 1.1E-05 44.9 9.3 89 118-225 34-122 (233)
149 PRK04338 N(2),N(2)-dimethylgua 93.2 0.48 1E-05 49.9 9.5 81 133-229 57-138 (382)
150 PRK01544 bifunctional N5-gluta 93.2 0.43 9.4E-06 51.9 9.4 95 115-225 331-425 (506)
151 PHA03412 putative methyltransf 93.1 0.23 5E-06 49.5 6.5 88 116-227 34-124 (241)
152 TIGR00452 methyltransferase, p 93.0 0.52 1.1E-05 48.5 9.1 54 119-175 108-161 (314)
153 PRK11783 rlmL 23S rRNA m(2)G24 92.9 0.45 9.7E-06 53.7 9.3 79 133-225 538-616 (702)
154 PLN02585 magnesium protoporphy 92.8 0.54 1.2E-05 48.3 9.0 60 119-181 128-189 (315)
155 PRK03612 spermidine synthase; 92.7 0.6 1.3E-05 50.9 9.7 83 133-225 297-381 (521)
156 COG2230 Cfa Cyclopropane fatty 92.7 0.68 1.5E-05 47.2 9.4 74 121-202 61-134 (283)
157 PLN02366 spermidine synthase 92.6 0.7 1.5E-05 47.3 9.4 95 112-225 79-173 (308)
158 COG2520 Predicted methyltransf 92.5 0.63 1.4E-05 48.6 9.0 103 117-235 172-274 (341)
159 smart00828 PKS_MT Methyltransf 92.1 0.67 1.4E-05 43.8 8.0 58 136-199 2-59 (224)
160 TIGR01444 fkbM_fam methyltrans 92.0 0.54 1.2E-05 41.0 6.9 45 136-181 1-45 (143)
161 TIGR00417 speE spermidine synt 92.0 1.4 3E-05 43.8 10.5 80 135-225 74-153 (270)
162 KOG1122 tRNA and rRNA cytosine 91.9 0.42 9.1E-06 51.2 7.0 109 101-229 216-324 (460)
163 PLN02336 phosphoethanolamine N 91.9 0.5 1.1E-05 50.2 7.7 51 122-176 27-77 (475)
164 PF11599 AviRa: RRNA methyltra 91.7 0.25 5.3E-06 48.9 4.7 64 114-179 28-98 (246)
165 PF00398 RrnaAD: Ribosomal RNA 91.6 0.51 1.1E-05 46.6 6.9 80 112-203 10-89 (262)
166 PRK11727 23S rRNA mA1618 methy 91.4 1.1 2.3E-05 46.4 9.3 84 133-227 114-199 (321)
167 PRK01581 speE spermidine synth 91.1 1 2.3E-05 47.5 8.9 82 134-225 151-234 (374)
168 TIGR00478 tly hemolysin TlyA f 91.1 0.61 1.3E-05 45.9 6.8 51 121-173 63-113 (228)
169 PF01564 Spermine_synth: Sperm 90.8 0.63 1.4E-05 45.9 6.6 94 112-225 64-158 (246)
170 COG0742 N6-adenine-specific me 90.7 2.4 5.1E-05 40.9 10.2 95 121-228 29-125 (187)
171 PRK11088 rrmA 23S rRNA methylt 90.2 0.96 2.1E-05 44.7 7.4 45 133-177 85-131 (272)
172 COG0293 FtsJ 23S rRNA methylas 90.2 0.75 1.6E-05 44.9 6.4 63 122-201 34-96 (205)
173 PF02384 N6_Mtase: N-6 DNA Met 90.1 0.4 8.8E-06 47.9 4.7 102 117-232 30-140 (311)
174 PF08242 Methyltransf_12: Meth 89.6 0.061 1.3E-06 44.3 -1.3 44 138-182 1-44 (99)
175 PRK04148 hypothetical protein; 89.6 1.2 2.5E-05 40.8 6.9 51 124-177 8-58 (134)
176 COG1041 Predicted DNA modifica 89.0 1.1 2.4E-05 47.0 7.0 90 121-229 185-278 (347)
177 TIGR03439 methyl_EasF probable 89.0 3.6 7.9E-05 42.5 10.7 96 133-236 76-174 (319)
178 PF13679 Methyltransf_32: Meth 88.5 1.7 3.8E-05 38.8 7.1 49 132-182 24-77 (141)
179 PF01209 Ubie_methyltran: ubiE 88.3 0.29 6.3E-06 48.0 2.1 42 344-385 130-171 (233)
180 PRK11783 rlmL 23S rRNA m(2)G24 88.0 1.7 3.7E-05 49.2 8.3 53 160-224 258-310 (702)
181 COG4106 Tam Trans-aconitate me 87.8 1.2 2.6E-05 44.4 6.0 57 122-180 20-76 (257)
182 COG0421 SpeE Spermidine syntha 87.4 1.9 4.2E-05 43.8 7.4 80 135-225 78-157 (282)
183 KOG2360 Proliferation-associat 87.4 0.81 1.8E-05 48.6 4.8 98 131-254 211-308 (413)
184 COG2813 RsmC 16S RNA G1207 met 86.6 5.2 0.00011 41.3 10.0 56 124-181 150-205 (300)
185 PF13578 Methyltransf_24: Meth 86.1 1 2.3E-05 37.6 4.0 70 144-226 7-78 (106)
186 KOG2904 Predicted methyltransf 86.0 2.8 6E-05 43.2 7.6 98 121-228 134-233 (328)
187 COG0116 Predicted N6-adenine-s 85.6 3 6.4E-05 44.3 7.9 54 160-227 256-309 (381)
188 TIGR01983 UbiG ubiquinone bios 85.4 5.9 0.00013 37.2 9.2 75 133-224 45-119 (224)
189 COG0030 KsgA Dimethyladenosine 85.3 3.4 7.3E-05 41.7 7.8 98 111-228 9-106 (259)
190 TIGR03840 TMPT_Se_Te thiopurin 84.8 3.3 7.2E-05 40.0 7.4 52 120-175 22-73 (213)
191 PF08123 DOT1: Histone methyla 84.5 7.3 0.00016 37.7 9.5 96 117-224 27-129 (205)
192 KOG1541 Predicted protein carb 83.8 3.1 6.7E-05 41.7 6.6 62 112-176 27-90 (270)
193 COG2226 UbiE Methylase involve 83.3 1.5 3.2E-05 43.7 4.3 41 345-385 134-174 (238)
194 PLN02823 spermine synthase 83.3 5.4 0.00012 41.5 8.6 94 112-225 91-184 (336)
195 PF12836 HHH_3: Helix-hairpin- 82.9 0.33 7.1E-06 38.4 -0.4 41 263-309 8-49 (65)
196 PF06962 rRNA_methylase: Putat 81.1 1.4 3E-05 40.7 2.9 36 348-383 73-113 (140)
197 PLN02672 methionine S-methyltr 81.0 4.8 0.0001 48.0 8.0 66 134-200 119-194 (1082)
198 KOG0820 Ribosomal RNA adenine 80.5 11 0.00023 38.9 9.2 90 118-227 44-133 (315)
199 PF07279 DUF1442: Protein of u 80.2 11 0.00023 37.4 8.9 92 121-226 29-124 (218)
200 PF02254 TrkA_N: TrkA-N domain 80.1 4.6 0.0001 34.0 5.7 67 142-226 4-71 (116)
201 COG1092 Predicted SAM-dependen 80.1 11 0.00023 40.3 9.6 80 133-224 217-297 (393)
202 KOG1540 Ubiquinone biosynthesi 79.6 8.9 0.00019 39.2 8.3 95 121-228 89-188 (296)
203 COG2521 Predicted archaeal met 79.2 2.3 5.1E-05 42.9 4.0 158 24-224 46-212 (287)
204 KOG1540 Ubiquinone biosynthesi 78.8 2.9 6.3E-05 42.6 4.6 40 346-385 193-232 (296)
205 PF10672 Methyltrans_SAM: S-ad 78.4 14 0.00031 37.7 9.5 79 133-224 123-202 (286)
206 PF00891 Methyltransf_2: O-met 78.1 7.3 0.00016 37.4 7.0 63 123-200 91-153 (241)
207 PF08003 Methyltransf_9: Prote 76.9 11 0.00023 39.2 8.1 51 121-174 104-154 (315)
208 smart00138 MeTrc Methyltransfe 76.7 5.6 0.00012 39.6 5.9 62 116-177 79-151 (264)
209 PF03059 NAS: Nicotianamine sy 76.3 5.1 0.00011 40.8 5.6 56 142-202 127-186 (276)
210 PF05401 NodS: Nodulation prot 76.2 7.5 0.00016 38.0 6.5 58 133-201 43-100 (201)
211 KOG2899 Predicted methyltransf 76.1 6 0.00013 40.2 5.9 64 117-181 41-105 (288)
212 PRK13255 thiopurine S-methyltr 75.9 8.2 0.00018 37.4 6.7 51 121-175 26-76 (218)
213 PLN02232 ubiquinone biosynthes 75.6 2.9 6.3E-05 38.2 3.4 38 345-383 59-96 (160)
214 PRK00536 speE spermidine synth 75.6 8.2 0.00018 38.9 6.8 89 111-225 59-147 (262)
215 KOG2198 tRNA cytosine-5-methyl 72.7 13 0.00028 39.6 7.6 113 101-229 130-248 (375)
216 KOG3191 Predicted N6-DNA-methy 72.6 27 0.00058 34.2 9.1 78 133-227 43-120 (209)
217 PF13489 Methyltransf_23: Meth 70.9 18 0.00039 31.4 7.1 39 132-173 21-59 (161)
218 TIGR00426 competence protein C 70.7 3.3 7.2E-05 32.8 2.2 41 263-308 10-51 (69)
219 PRK13256 thiopurine S-methyltr 70.2 16 0.00036 36.0 7.4 52 121-176 32-83 (226)
220 TIGR00438 rrmJ cell division p 69.7 6.3 0.00014 36.6 4.2 26 344-369 123-148 (188)
221 PF08241 Methyltransf_11: Meth 69.3 2.1 4.5E-05 33.7 0.8 22 344-365 74-95 (95)
222 PRK11188 rrmJ 23S rRNA methylt 67.5 7 0.00015 37.5 4.1 25 346-370 144-168 (209)
223 TIGR00537 hemK_rel_arch HemK-r 66.1 11 0.00024 34.5 5.0 35 341-375 114-149 (179)
224 PF07021 MetW: Methionine bios 64.8 25 0.00054 34.2 7.2 49 124-176 6-54 (193)
225 KOG1271 Methyltransferases [Ge 63.9 13 0.00029 36.4 5.2 45 134-179 68-112 (227)
226 PF12847 Methyltransf_18: Meth 63.3 5.5 0.00012 32.9 2.2 23 344-366 88-110 (112)
227 PRK11207 tellurite resistance 61.1 9.2 0.0002 36.1 3.5 31 343-373 110-140 (197)
228 TIGR02469 CbiT precorrin-6Y C5 60.3 9.9 0.00022 31.6 3.3 26 343-369 98-123 (124)
229 PLN02233 ubiquinone biosynthes 59.3 9.1 0.0002 37.9 3.3 31 343-373 158-188 (261)
230 PRK06940 short chain dehydroge 59.2 52 0.0011 32.1 8.6 76 143-228 9-87 (275)
231 TIGR00477 tehB tellurite resis 59.0 11 0.00024 35.5 3.7 28 344-371 110-137 (195)
232 KOG2187 tRNA uracil-5-methyltr 58.3 12 0.00027 41.3 4.3 72 116-197 367-438 (534)
233 PRK00377 cbiT cobalt-precorrin 58.1 6.1 0.00013 37.1 1.8 29 344-373 122-150 (198)
234 TIGR03704 PrmC_rel_meth putati 57.9 19 0.00042 35.5 5.3 42 340-382 189-230 (251)
235 COG4262 Predicted spermidine s 56.6 43 0.00093 36.2 7.7 69 147-225 300-373 (508)
236 COG1555 ComEA DNA uptake prote 56.5 11 0.00023 35.0 3.0 40 263-308 91-131 (149)
237 PRK07478 short chain dehydroge 55.8 1.1E+02 0.0023 29.0 9.9 84 135-228 7-94 (254)
238 TIGR02752 MenG_heptapren 2-hep 55.6 12 0.00026 35.4 3.3 36 345-380 129-164 (231)
239 PRK12939 short chain dehydroge 54.5 1.1E+02 0.0024 28.4 9.7 82 140-230 12-97 (250)
240 PRK07666 fabG 3-ketoacyl-(acyl 53.7 79 0.0017 29.5 8.5 80 141-229 13-96 (239)
241 PRK08945 putative oxoacyl-(acy 53.4 57 0.0012 30.8 7.5 81 141-229 18-104 (247)
242 PF06859 Bin3: Bicoid-interact 52.4 13 0.00028 33.1 2.8 30 337-366 14-43 (110)
243 PRK09328 N5-glutamine S-adenos 52.1 28 0.00062 33.7 5.4 42 340-382 211-252 (275)
244 TIGR00563 rsmB ribosomal RNA s 52.0 24 0.00052 37.4 5.2 35 347-381 348-384 (426)
245 PF12147 Methyltransf_20: Puta 51.6 61 0.0013 33.8 7.8 69 115-183 117-186 (311)
246 PRK14967 putative methyltransf 50.8 32 0.00068 32.9 5.4 23 344-366 136-158 (223)
247 PRK09072 short chain dehydroge 50.5 86 0.0019 29.9 8.4 78 141-229 11-92 (263)
248 PF08242 Methyltransf_12: Meth 49.8 9.4 0.0002 31.2 1.4 20 344-363 80-99 (99)
249 PF14164 YqzH: YqzH-like prote 49.1 32 0.00069 28.0 4.2 44 268-314 7-58 (64)
250 PF04672 Methyltransf_19: S-ad 49.1 84 0.0018 32.1 8.3 81 121-208 56-139 (267)
251 KOG4589 Cell division protein 48.7 38 0.00081 33.5 5.5 45 121-168 60-104 (232)
252 PRK13798 putative OHCU decarbo 48.3 41 0.00088 31.7 5.6 49 260-314 8-56 (166)
253 PF04816 DUF633: Family of unk 47.6 1.1E+02 0.0023 29.8 8.5 60 137-202 1-61 (205)
254 PRK14902 16S rRNA methyltransf 47.2 30 0.00065 36.9 5.1 35 347-382 359-397 (444)
255 PRK07402 precorrin-6B methylas 47.2 35 0.00077 31.8 5.0 38 345-383 120-158 (196)
256 PRK05867 short chain dehydroge 47.1 1.2E+02 0.0025 28.8 8.7 80 141-229 15-98 (253)
257 PF05724 TPMT: Thiopurine S-me 46.8 44 0.00094 32.6 5.7 53 120-176 25-77 (218)
258 PRK06194 hypothetical protein; 46.1 1.9E+02 0.0041 27.9 10.0 82 140-230 11-96 (287)
259 PRK11760 putative 23S rRNA C24 46.0 38 0.00083 35.9 5.5 45 121-168 192-243 (357)
260 PRK07677 short chain dehydroge 46.0 1.7E+02 0.0037 27.7 9.6 78 141-227 7-88 (252)
261 PRK08251 short chain dehydroge 45.9 1.6E+02 0.0034 27.6 9.3 83 140-229 7-93 (248)
262 PRK08217 fabG 3-ketoacyl-(acyl 45.5 2.1E+02 0.0045 26.6 10.0 81 140-229 10-94 (253)
263 TIGR01963 PHB_DH 3-hydroxybuty 45.4 1.3E+02 0.0028 28.1 8.5 80 141-229 7-90 (255)
264 PTZ00098 phosphoethanolamine N 45.1 24 0.00053 34.9 3.8 26 345-370 134-159 (263)
265 PF02005 TRM: N2,N2-dimethylgu 44.8 84 0.0018 33.3 7.9 124 135-281 51-175 (377)
266 PRK04266 fibrillarin; Provisio 44.6 40 0.00087 33.0 5.1 19 347-365 156-174 (226)
267 KOG3339 Predicted glycosyltran 44.3 21 0.00045 35.0 3.0 35 141-176 44-85 (211)
268 TIGR03840 TMPT_Se_Te thiopurin 44.2 27 0.00058 33.8 3.8 26 345-370 130-155 (213)
269 PRK07523 gluconate 5-dehydroge 44.2 1.4E+02 0.003 28.3 8.6 80 140-228 15-98 (255)
270 TIGR00740 methyltransferase, p 44.1 37 0.0008 32.6 4.8 36 345-380 139-174 (239)
271 TIGR00138 gidB 16S rRNA methyl 44.1 19 0.0004 33.9 2.6 25 343-367 118-142 (181)
272 COG2227 UbiG 2-polyprenyl-3-me 43.7 46 0.001 33.5 5.4 43 133-178 59-101 (243)
273 PF00145 DNA_methylase: C-5 cy 43.6 51 0.0011 32.3 5.7 41 136-178 2-42 (335)
274 cd00315 Cyt_C5_DNA_methylase C 43.6 46 0.00099 33.3 5.5 40 136-177 2-41 (275)
275 COG2242 CobL Precorrin-6B meth 43.4 6.8 0.00015 37.9 -0.4 35 336-372 105-139 (187)
276 TIGR02716 C20_methyl_CrtF C-20 43.3 27 0.00059 35.0 3.8 26 344-369 231-256 (306)
277 PLN02232 ubiquinone biosynthes 42.8 34 0.00073 31.2 4.1 64 162-239 1-64 (160)
278 PF02153 PDH: Prephenate dehyd 42.7 74 0.0016 31.4 6.7 72 152-226 5-79 (258)
279 TIGR00406 prmA ribosomal prote 42.7 46 0.001 33.4 5.4 38 345-382 237-274 (288)
280 COG4798 Predicted methyltransf 42.7 22 0.00048 35.2 2.9 46 122-168 38-83 (238)
281 KOG1975 mRNA cap methyltransfe 42.2 39 0.00085 35.8 4.8 48 132-181 116-163 (389)
282 PRK14904 16S rRNA methyltransf 42.2 49 0.0011 35.4 5.7 35 348-382 358-395 (445)
283 PF13489 Methyltransf_23: Meth 42.1 17 0.00038 31.5 2.0 25 346-370 94-118 (161)
284 PRK12335 tellurite resistance 41.5 29 0.00063 34.6 3.7 30 344-373 200-229 (287)
285 PRK05866 short chain dehydroge 41.4 1.6E+02 0.0034 29.2 8.8 80 140-228 45-128 (293)
286 PRK06197 short chain dehydroge 41.2 3.1E+02 0.0066 27.0 10.9 88 134-229 16-107 (306)
287 cd01468 trunk_domain trunk dom 41.0 33 0.00072 33.4 3.9 30 340-369 19-50 (239)
288 PF00107 ADH_zinc_N: Zinc-bind 40.9 15 0.00033 31.2 1.4 22 349-370 71-92 (130)
289 PLN02244 tocopherol O-methyltr 40.8 27 0.00058 36.0 3.4 24 346-369 202-225 (340)
290 PRK00216 ubiE ubiquinone/menaq 40.8 45 0.00097 31.1 4.7 31 345-375 136-166 (239)
291 KOG3010 Methyltransferase [Gen 40.4 48 0.001 33.7 4.9 40 135-177 35-74 (261)
292 TIGR00091 tRNA (guanine-N(7)-) 40.3 49 0.0011 31.0 4.8 35 347-381 112-146 (194)
293 COG1189 Predicted rRNA methyla 40.2 60 0.0013 32.8 5.6 48 121-170 67-114 (245)
294 PRK07097 gluconate 5-dehydroge 39.9 1.6E+02 0.0035 28.1 8.5 83 136-229 14-99 (265)
295 PF04989 CmcI: Cephalosporin h 39.8 36 0.00078 33.4 3.9 74 119-203 22-98 (206)
296 PRK05599 hypothetical protein; 39.7 1.6E+02 0.0036 28.0 8.5 81 141-229 6-89 (246)
297 PF11055 Gsf2: Glucose signall 39.6 77 0.0017 33.7 6.5 82 221-313 271-361 (377)
298 PRK11036 putative S-adenosyl-L 39.6 28 0.00061 33.9 3.2 32 345-377 127-158 (255)
299 PRK07904 short chain dehydroge 39.3 93 0.002 29.9 6.7 79 141-228 14-98 (253)
300 PRK08317 hypothetical protein; 39.1 40 0.00087 31.2 4.1 38 346-383 103-147 (241)
301 PRK08277 D-mannonate oxidoredu 38.8 1.8E+02 0.004 27.9 8.7 81 140-229 15-99 (278)
302 PRK11873 arsM arsenite S-adeno 38.8 29 0.00064 33.9 3.2 25 347-371 163-187 (272)
303 PRK10258 biotin biosynthesis p 38.8 30 0.00065 33.4 3.2 26 345-370 118-143 (251)
304 PRK08287 cobalt-precorrin-6Y C 38.3 59 0.0013 30.0 5.0 20 346-365 110-129 (187)
305 PRK07062 short chain dehydroge 38.2 2.1E+02 0.0045 27.2 8.9 82 140-228 13-98 (265)
306 TIGR01259 comE comEA protein. 37.9 27 0.00058 31.0 2.5 40 263-308 62-102 (120)
307 cd01478 Sec23-like Sec23-like: 37.9 44 0.00096 33.6 4.3 28 342-369 18-45 (267)
308 PF02353 CMAS: Mycolic acid cy 37.4 43 0.00094 33.7 4.2 32 344-375 143-174 (273)
309 TIGR03534 RF_mod_PrmC protein- 37.3 69 0.0015 30.4 5.4 42 340-382 190-231 (251)
310 PF05185 PRMT5: PRMT5 arginine 37.2 95 0.0021 33.7 7.0 74 134-222 187-263 (448)
311 PRK08339 short chain dehydroge 37.1 1.9E+02 0.0041 27.9 8.5 79 140-227 13-95 (263)
312 TIGR02072 BioC biotin biosynth 36.9 50 0.0011 30.7 4.3 28 345-372 113-140 (240)
313 cd05007 SIS_Etherase N-acetylm 36.7 93 0.002 31.0 6.4 51 302-370 9-59 (257)
314 KOG1709 Guanidinoacetate methy 36.7 1.3E+02 0.0029 30.4 7.3 78 132-225 100-177 (271)
315 PRK04457 spermidine synthase; 36.7 40 0.00088 33.5 3.8 24 347-370 157-180 (262)
316 smart00828 PKS_MT Methyltransf 36.4 38 0.00081 31.9 3.4 24 346-369 83-106 (224)
317 PRK08643 acetoin reductase; Va 35.7 2.6E+02 0.0056 26.4 9.0 79 139-228 9-90 (256)
318 PRK11933 yebU rRNA (cytosine-C 35.4 51 0.0011 36.0 4.6 41 342-382 216-259 (470)
319 COG2927 HolC DNA polymerase II 35.2 47 0.001 31.0 3.7 87 85-182 41-130 (144)
320 KOG1271 Methyltransferases [Ge 35.0 45 0.00096 32.9 3.6 33 348-380 162-194 (227)
321 PF08660 Alg14: Oligosaccharid 34.9 50 0.0011 31.0 4.0 36 141-176 4-46 (170)
322 PRK12429 3-hydroxybutyrate deh 34.7 2.3E+02 0.0049 26.5 8.4 80 141-229 10-93 (258)
323 PRK10901 16S rRNA methyltransf 34.7 58 0.0013 34.6 4.9 36 346-381 351-388 (427)
324 COG4123 Predicted O-methyltran 34.1 38 0.00083 34.1 3.2 28 341-368 144-171 (248)
325 PRK08263 short chain dehydroge 34.0 2E+02 0.0044 27.7 8.1 77 141-229 9-89 (275)
326 COG4976 Predicted methyltransf 33.7 31 0.00067 35.1 2.4 68 105-176 98-165 (287)
327 PRK09489 rsmC 16S ribosomal RN 33.6 69 0.0015 33.4 5.1 41 342-382 278-319 (342)
328 TIGR03206 benzo_BadH 2-hydroxy 32.8 3E+02 0.0066 25.6 8.9 62 159-229 28-92 (250)
329 PRK06181 short chain dehydroge 32.8 2.6E+02 0.0056 26.5 8.6 80 141-229 7-90 (263)
330 PRK15451 tRNA cmo(5)U34 methyl 32.6 74 0.0016 31.0 4.9 23 345-367 142-164 (247)
331 COG1023 Gnd Predicted 6-phosph 32.5 1.9E+02 0.0041 29.8 7.6 29 218-247 111-139 (300)
332 PRK06198 short chain dehydroge 32.4 3.3E+02 0.0071 25.6 9.2 61 160-229 33-96 (260)
333 PRK06949 short chain dehydroge 32.4 2.7E+02 0.0058 26.1 8.6 80 141-229 15-98 (258)
334 PRK14901 16S rRNA methyltransf 32.4 89 0.0019 33.3 5.8 38 346-383 363-403 (434)
335 PRK12826 3-ketoacyl-(acyl-carr 32.1 3E+02 0.0064 25.5 8.7 79 141-228 12-94 (251)
336 PRK07814 short chain dehydroge 31.8 2.6E+02 0.0056 26.7 8.4 77 141-228 19-98 (263)
337 PF14579 HHH_6: Helix-hairpin- 31.7 58 0.0013 27.1 3.4 27 284-310 36-62 (90)
338 PLN03209 translocon at the inn 31.7 2.3E+02 0.005 32.0 9.0 83 141-229 86-171 (576)
339 PRK08340 glucose-1-dehydrogena 31.5 2.5E+02 0.0054 26.7 8.3 79 141-229 6-88 (259)
340 TIGR00536 hemK_fam HemK family 31.4 77 0.0017 31.6 4.9 41 340-381 217-257 (284)
341 PF02086 MethyltransfD12: D12 31.2 87 0.0019 30.0 5.1 57 120-180 8-64 (260)
342 KOG1270 Methyltransferases [Co 31.2 77 0.0017 32.6 4.8 41 134-177 90-130 (282)
343 cd02440 AdoMet_MTases S-adenos 31.1 66 0.0014 24.4 3.5 24 343-366 80-103 (107)
344 PRK13394 3-hydroxybutyrate deh 31.1 3.8E+02 0.0083 25.1 9.4 80 140-228 12-95 (262)
345 PRK12829 short chain dehydroge 31.0 3.9E+02 0.0086 25.0 9.5 80 136-228 15-97 (264)
346 PRK06914 short chain dehydroge 30.8 2.9E+02 0.0063 26.5 8.6 82 140-230 11-94 (280)
347 PRK06125 short chain dehydroge 30.7 2.7E+02 0.0059 26.4 8.3 76 139-228 14-92 (259)
348 PLN02396 hexaprenyldihydroxybe 30.4 45 0.00097 34.5 3.1 30 341-370 209-238 (322)
349 PRK07102 short chain dehydroge 30.4 3.3E+02 0.0072 25.4 8.8 77 141-228 7-87 (243)
350 KOG0564 5,10-methylenetetrahyd 30.2 1.1E+02 0.0025 34.0 6.1 15 135-149 48-62 (590)
351 PF04811 Sec23_trunk: Sec23/Se 30.0 65 0.0014 31.2 4.0 31 340-370 19-51 (243)
352 PF01234 NNMT_PNMT_TEMT: NNMT/ 29.9 35 0.00076 34.4 2.1 26 343-368 175-200 (256)
353 PRK07041 short chain dehydroge 29.7 3.7E+02 0.008 24.8 8.9 60 159-229 22-81 (230)
354 KOG1500 Protein arginine N-met 29.7 2.5E+02 0.0055 30.3 8.3 70 124-202 169-238 (517)
355 PRK08213 gluconate 5-dehydroge 29.4 3.7E+02 0.008 25.4 9.0 79 141-228 18-100 (259)
356 PRK00121 trmB tRNA (guanine-N( 29.2 52 0.0011 31.1 3.1 24 346-369 135-158 (202)
357 PRK06720 hypothetical protein; 29.2 4E+02 0.0086 24.6 8.9 84 137-229 18-105 (169)
358 COG1561 Uncharacterized stress 28.8 64 0.0014 33.3 3.8 49 330-383 208-256 (290)
359 PF05401 NodS: Nodulation prot 28.7 40 0.00087 33.1 2.2 28 342-369 121-148 (201)
360 PRK09242 tropinone reductase; 28.6 4E+02 0.0088 25.1 9.1 81 141-228 15-99 (257)
361 COG1041 Predicted DNA modifica 28.5 52 0.0011 34.8 3.2 26 343-368 285-311 (347)
362 PF12692 Methyltransf_17: S-ad 28.5 1.6E+02 0.0036 27.9 6.1 48 121-172 18-66 (160)
363 KOG0874 Sphingolipid hydroxyla 28.4 55 0.0012 32.9 3.1 33 338-372 10-42 (287)
364 PRK14103 trans-aconitate 2-met 28.3 54 0.0012 31.9 3.1 23 346-368 105-127 (255)
365 cd01479 Sec24-like Sec24-like: 28.2 86 0.0019 30.9 4.5 31 340-370 19-52 (244)
366 PRK09291 short chain dehydroge 28.1 3.3E+02 0.0071 25.5 8.4 76 141-228 8-84 (257)
367 KOG1499 Protein arginine N-met 27.9 1.9E+02 0.0041 30.8 7.1 104 100-223 21-133 (346)
368 PRK05876 short chain dehydroge 27.7 3.6E+02 0.0078 26.3 8.8 81 140-229 11-95 (275)
369 PRK10538 malonic semialdehyde 27.3 3E+02 0.0065 26.0 8.0 77 141-229 6-86 (248)
370 KOG2361 Predicted methyltransf 27.3 1.1E+02 0.0023 31.3 4.9 59 120-178 57-117 (264)
371 KOG2671 Putative RNA methylase 27.2 39 0.00085 36.1 2.0 44 126-172 201-244 (421)
372 PRK06124 gluconate 5-dehydroge 27.1 3.5E+02 0.0076 25.4 8.4 79 141-228 17-99 (256)
373 PRK11705 cyclopropane fatty ac 26.8 66 0.0014 33.9 3.7 26 344-369 244-269 (383)
374 PRK07792 fabG 3-ketoacyl-(acyl 26.7 4.7E+02 0.01 25.9 9.6 85 134-229 12-101 (306)
375 PRK12745 3-ketoacyl-(acyl-carr 26.4 3.8E+02 0.0081 25.1 8.4 82 140-230 7-93 (256)
376 PF13847 Methyltransf_31: Meth 26.1 35 0.00076 30.2 1.3 29 344-372 87-115 (152)
377 PRK07890 short chain dehydroge 26.0 5.3E+02 0.011 24.1 9.4 80 138-228 11-93 (258)
378 PRK07024 short chain dehydroge 26.0 3.7E+02 0.0081 25.5 8.4 79 141-229 8-90 (257)
379 PRK06500 short chain dehydroge 25.9 3.3E+02 0.0071 25.3 7.9 79 138-228 9-91 (249)
380 PRK06172 short chain dehydroge 25.8 3.3E+02 0.0072 25.6 7.9 79 139-228 14-95 (253)
381 PRK14966 unknown domain/N5-glu 25.7 1.1E+02 0.0024 33.2 5.1 43 339-382 353-395 (423)
382 TIGR02415 23BDH acetoin reduct 25.7 4.5E+02 0.0098 24.5 8.8 78 140-228 8-88 (254)
383 PRK13255 thiopurine S-methyltr 25.5 65 0.0014 31.3 3.1 29 345-373 133-161 (218)
384 PRK06196 oxidoreductase; Provi 25.4 3.7E+02 0.0081 26.6 8.6 77 140-229 31-111 (315)
385 KOG1661 Protein-L-isoaspartate 25.2 92 0.002 31.2 4.0 65 118-182 66-132 (237)
386 PRK08085 gluconate 5-dehydroge 25.1 4.5E+02 0.0097 24.8 8.7 79 141-228 15-97 (254)
387 PRK05717 oxidoreductase; Valid 24.8 5.2E+02 0.011 24.4 9.1 84 133-229 9-96 (255)
388 PRK06139 short chain dehydroge 24.7 3.6E+02 0.0079 27.5 8.5 81 140-229 12-96 (330)
389 PRK07454 short chain dehydroge 24.7 4E+02 0.0086 24.8 8.2 79 141-228 12-94 (241)
390 PRK06138 short chain dehydroge 24.5 4.7E+02 0.01 24.3 8.7 80 138-229 11-93 (252)
391 PRK07831 short chain dehydroge 24.5 4.5E+02 0.0098 24.9 8.7 76 143-228 29-108 (262)
392 KOG2899 Predicted methyltransf 24.3 45 0.00098 34.1 1.8 28 339-366 181-208 (288)
393 PRK12384 sorbitol-6-phosphate 24.2 5.4E+02 0.012 24.2 9.1 76 145-229 15-93 (259)
394 COG1352 CheR Methylase of chem 24.0 1E+02 0.0022 31.3 4.3 63 114-176 75-147 (268)
395 COG0863 DNA modification methy 24.0 2.4E+02 0.0053 27.5 6.8 63 114-182 204-268 (302)
396 COG3963 Phospholipid N-methylt 23.7 3.7E+02 0.0081 26.3 7.6 91 116-223 32-123 (194)
397 COG4017 Uncharacterized protei 23.7 67 0.0015 31.9 2.7 48 135-183 101-154 (254)
398 PRK07063 short chain dehydroge 23.5 4.9E+02 0.011 24.5 8.7 81 141-228 13-97 (260)
399 TIGR00452 methyltransferase, p 23.3 83 0.0018 32.5 3.5 23 346-368 204-226 (314)
400 KOG2651 rRNA adenine N-6-methy 23.2 2E+02 0.0043 31.4 6.2 55 120-176 140-194 (476)
401 PRK07774 short chain dehydroge 23.2 5E+02 0.011 24.2 8.6 80 141-229 12-95 (250)
402 PRK07109 short chain dehydroge 23.2 4.4E+02 0.0095 26.7 8.7 80 139-229 15-97 (334)
403 PF00072 Response_reg: Respons 23.1 3.9E+02 0.0085 21.3 7.0 53 161-227 1-53 (112)
404 COG4076 Predicted RNA methylas 23.0 1.5E+02 0.0031 29.6 4.8 56 134-198 33-88 (252)
405 PF10354 DUF2431: Domain of un 22.9 1.3E+02 0.0028 28.1 4.4 36 333-370 93-128 (166)
406 PF07015 VirC1: VirC1 protein; 22.7 1.9E+02 0.0042 28.9 5.8 80 143-231 11-98 (231)
407 PF01739 CheR: CheR methyltran 22.7 82 0.0018 30.3 3.2 62 115-176 10-82 (196)
408 PLN02672 methionine S-methyltr 22.4 1.8E+02 0.004 35.2 6.5 43 340-382 251-293 (1082)
409 PRK07832 short chain dehydroge 22.3 5.1E+02 0.011 24.8 8.6 81 140-230 8-91 (272)
410 PRK08267 short chain dehydroge 22.3 4.2E+02 0.009 25.1 7.9 61 159-229 26-89 (260)
411 PRK01683 trans-aconitate 2-met 22.2 80 0.0017 30.5 3.0 25 346-370 109-133 (258)
412 PLN02540 methylenetetrahydrofo 22.1 2.1E+02 0.0045 32.3 6.5 58 123-182 19-86 (565)
413 PF05527 DUF758: Domain of unk 22.0 82 0.0018 30.6 2.9 32 258-294 34-66 (186)
414 COG0144 Sun tRNA and rRNA cyto 22.0 78 0.0017 33.1 3.0 41 342-382 262-305 (355)
415 PRK07231 fabG 3-ketoacyl-(acyl 21.9 5E+02 0.011 24.0 8.3 80 138-229 11-93 (251)
416 PF13155 Toprim_2: Toprim-like 21.9 2.5E+02 0.0053 22.8 5.5 33 149-181 39-71 (96)
417 PF14350 Beta_protein: Beta pr 21.8 3.7E+02 0.0081 27.5 7.9 80 142-229 76-166 (347)
418 KOG1986 Vesicle coat complex C 21.7 1E+02 0.0022 35.6 3.9 30 341-370 135-164 (745)
419 PRK07326 short chain dehydroge 21.7 5.3E+02 0.011 23.8 8.3 59 159-227 31-92 (237)
420 PRK11524 putative methyltransf 21.4 1E+02 0.0022 30.8 3.7 21 346-366 59-79 (284)
421 PRK07576 short chain dehydroge 20.9 5.9E+02 0.013 24.4 8.7 60 159-227 34-96 (264)
422 TIGR01829 AcAcCoA_reduct aceto 20.9 6.4E+02 0.014 23.2 8.7 79 140-229 8-90 (242)
423 PRK05565 fabG 3-ketoacyl-(acyl 20.8 5.4E+02 0.012 23.7 8.2 81 137-228 10-94 (247)
424 PRK05650 short chain dehydroge 20.8 6E+02 0.013 24.2 8.8 79 140-229 8-89 (270)
425 PRK06113 7-alpha-hydroxysteroi 20.7 6.4E+02 0.014 23.8 8.8 79 140-229 19-100 (255)
426 COG1724 Predicted RNA binding 20.4 53 0.0011 26.9 1.1 17 357-373 34-50 (66)
427 PRK05653 fabG 3-ketoacyl-(acyl 20.3 6.1E+02 0.013 23.2 8.4 81 140-229 10-94 (246)
428 TIGR00274 N-acetylmuramic acid 20.2 1.3E+02 0.0029 30.7 4.2 49 302-368 17-65 (291)
429 PRK08278 short chain dehydroge 20.2 5.8E+02 0.013 24.6 8.6 81 140-229 11-102 (273)
430 PRK05854 short chain dehydroge 20.1 6.6E+02 0.014 25.0 9.2 83 140-229 19-105 (313)
No 1
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-117 Score=879.51 Aligned_cols=310 Identities=43% Similarity=0.667 Sum_probs=285.6
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
..+.|+|||++|+++.|. ++|+++|||||||+||||.+||+++++.++|||+|+||+||+.|+++|..|.. |
T Consensus 3 ~~~~HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-------r 74 (314)
T COG0275 3 NSFRHIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-------R 74 (314)
T ss_pred CCCCccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-------c
Confidence 456799999999999998 57999999999999999999999999999999999999999999999999853 8
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHH
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEV 271 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL 271 (452)
++++|+||+++..++.+.+ ..+||||||||||||||||+++|||||++|||||||||+++++||+||||+|++++|
T Consensus 75 ~~~v~~~F~~l~~~l~~~~----i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L 150 (314)
T COG0275 75 VTLVHGNFANLAEALKELG----IGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDL 150 (314)
T ss_pred EEEEeCcHHHHHHHHHhcC----CCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHH
Confidence 9999999999999998875 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHH
Q 012954 272 GRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLH 351 (452)
Q Consensus 272 ~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~ 351 (452)
++||++||||++|++||++||++|+++||+||.||+++|..++|... +.+++||||||||||||+|||||++|+++|+
T Consensus 151 ~~I~~~yGEEr~arrIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~--~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~ 228 (314)
T COG0275 151 ARIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEIIKSAIPAKE--KRKKIHPATRTFQAIRIYVNDELEELEEALE 228 (314)
T ss_pred HHHHHHhccHhhHHHHHHHHHHHhccCCCccHHHHHHHHHHhCCchh--cccCCCcchhhhhhheeeehhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999752 3345899999999999999999999999999
Q ss_pred HHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCC
Q 012954 352 ACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPS 431 (452)
Q Consensus 352 ~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps 431 (452)
+|+++|+|||||+|||||||||||||+||++++. +. +|..+|++.+. ..+ .++++|||||.||
T Consensus 229 ~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~~~s~-~~-----~p~~lP~~~~~--~~~---------~~~~itkK~i~ps 291 (314)
T COG0275 229 AALDLLKPGGRLAVISFHSLEDRIVKNFFKELSK-PG-----VPKGLPVTEEG--PAL---------KFKLITKKPIMPS 291 (314)
T ss_pred HHHHhhCCCcEEEEEEecchHHHHHHHHHHHhcc-cC-----CCCCCCccccc--ccc---------hhhhccCCCcCCC
Confidence 9999999999999999999999999999999876 21 35556654332 111 1578999999999
Q ss_pred HHHHHhCcCccccccceeEeC
Q 012954 432 AEEERLNCRCRSAKLRVIQKI 452 (452)
Q Consensus 432 ~eEi~~NpRSRSAKLRv~eK~ 452 (452)
++|++.|||||||||||+||+
T Consensus 292 ~~Ei~~NpRsRSAkLRv~ek~ 312 (314)
T COG0275 292 EEEIEANPRARSAKLRVAEKI 312 (314)
T ss_pred HHHHHhCcchhhhHHHhhhhh
Confidence 999999999999999999985
No 2
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=100.00 E-value=7.5e-116 Score=875.71 Aligned_cols=308 Identities=48% Similarity=0.701 Sum_probs=242.2
Q ss_pred CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954 114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH 193 (452)
Q Consensus 114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~ 193 (452)
+.|+|||++||+++|. ++++++|||||||+||||.+||+++++ ++|||||+||+|++.|+++|+.|. .|+.
T Consensus 2 ~~H~PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-------~r~~ 72 (310)
T PF01795_consen 2 FYHIPVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-------DRFI 72 (310)
T ss_dssp SS---TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-------TTEE
T ss_pred CceecccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-------ceEE
Confidence 6799999999999998 579999999999999999999999999 789999999999999999998873 3899
Q ss_pred EEccCcchHHHHHhhh-cccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHH
Q 012954 194 TFAKNFRHIKSVLGQI-DENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVG 272 (452)
Q Consensus 194 li~~nF~~i~~~L~~~-~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~ 272 (452)
++++||+++.+++.+. + ...||||||||||||||||+++|||||++|||||||||+++++||+||||+||+++|+
T Consensus 73 ~~~~~F~~l~~~l~~~~~----~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~ 148 (310)
T PF01795_consen 73 FIHGNFSNLDEYLKELNG----INKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELA 148 (310)
T ss_dssp EEES-GGGHHHHHHHTTT----TS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHH
T ss_pred EEeccHHHHHHHHHHccC----CCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHH
Confidence 9999999999999886 3 3589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 012954 273 RVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352 (452)
Q Consensus 273 ~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~ 352 (452)
+||++||||++|++||++||++|+++||+||.||+++|.+++|.. .+++++||||||||||||+||+||++|+.+|++
T Consensus 149 ~I~~~yGee~~a~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~--~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~ 226 (310)
T PF01795_consen 149 RIFREYGEEKFARRIARAIVEARKKKPITTTKELAEIIEKAVPKK--RRRRKIHPATRVFQALRIAVNDELEELERGLEA 226 (310)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HH--HCC-SS-TTHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcc--cccccCCHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 234468999999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCH
Q 012954 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSA 432 (452)
Q Consensus 353 a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~ 432 (452)
++++|+|||||+|||||||||||||++|+++...|. +|..++++.+.. .+.++++|||||+||+
T Consensus 227 a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~~~~~-----~p~~lp~~~~~~-----------~~~~~~i~kk~i~ps~ 290 (310)
T PF01795_consen 227 APDLLKPGGRLVVISFHSLEDRIVKQFFRELAKSCK-----CPPGLPVCECGK-----------HPKFKLITKKPITPSE 290 (310)
T ss_dssp HHHHEEEEEEEEEEESSHHHHHHHHHHHHCCSSC----------------------------------EESESS-B---H
T ss_pred HHHHhcCCcEEEEEEecchhhHHHHHHHHHhcccCC-----Cccccccccccc-----------ccceEEccCCccCCCh
Confidence 999999999999999999999999999999987654 345555543321 2236899999999999
Q ss_pred HHHHhCcCccccccceeEeC
Q 012954 433 EEERLNCRCRSAKLRVIQKI 452 (452)
Q Consensus 433 eEi~~NpRSRSAKLRv~eK~ 452 (452)
+||+.|||||||||||+||+
T Consensus 291 ~Ei~~NpRsRSAkLRv~ek~ 310 (310)
T PF01795_consen 291 EEIEENPRSRSAKLRVAEKI 310 (310)
T ss_dssp HHHHH-GGGTT-EEEEEEE-
T ss_pred hhhhcCCchHhhhhheEEeC
Confidence 99999999999999999996
No 3
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=100.00 E-value=5.2e-114 Score=861.87 Aligned_cols=305 Identities=43% Similarity=0.628 Sum_probs=278.9
Q ss_pred CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT 192 (452)
Q Consensus 113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~ 192 (452)
++.|+|||++|+|++|. ++++++|||||||+||||.+||+++++ ++|||||+|++|++.|+++|+.|. .|+
T Consensus 1 ~~~H~pVll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~ 71 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRV 71 (305)
T ss_pred CCCCcchhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcE
Confidence 47899999999999998 579999999999999999999999987 889999999999999999998873 389
Q ss_pred EEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHH
Q 012954 193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVG 272 (452)
Q Consensus 193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~ 272 (452)
+++|+||+++.+++.+.+ ...||||||||||||||||+++|||||+.|||||||||+++++||+||||+||++||+
T Consensus 72 ~~i~~nF~~l~~~l~~~~----~~~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~ 147 (305)
T TIGR00006 72 VLIHDNFANFFEHLDELL----VTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLE 147 (305)
T ss_pred EEEeCCHHHHHHHHHhcC----CCcccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHH
Confidence 999999999999998765 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHH
Q 012954 273 RVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHA 352 (452)
Q Consensus 273 ~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~ 352 (452)
+||++||||++|++||++||++|+.+||+||.||+++|++++|.. .+++++||||||||||||+|||||++|+++|+.
T Consensus 148 ~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~--~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~ 225 (305)
T TIGR00006 148 RILKKYGEEKFSKRIARAIVERRKKKPIQTTKELAELISKAVPGF--SKHKSIHPATRVFQAIRIYVNDELEELEEALQF 225 (305)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCcc--ccccCCCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999953 223457999999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCH
Q 012954 353 CFDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSA 432 (452)
Q Consensus 353 a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~ 432 (452)
++++|+|||||||||||||||||||++|+++...+ +|..++.+.+ ..++++|||||+||+
T Consensus 226 ~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~~~~~------~~~~~~~~~~--------------~~~~~lt~k~i~ps~ 285 (305)
T TIGR00006 226 APNLLAPGGRLSIISFHSLEDRIVKNFFRELSKFP------QPPGLPVKET--------------PLYALITKKPITPSE 285 (305)
T ss_pred HHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccC------CCCCCCcccc--------------cceeEccCCCcCCCH
Confidence 99999999999999999999999999999886532 1333443321 125789999999999
Q ss_pred HHHHhCcCccccccceeEeC
Q 012954 433 EEERLNCRCRSAKLRVIQKI 452 (452)
Q Consensus 433 eEi~~NpRSRSAKLRv~eK~ 452 (452)
+||+.|||||||||||+||+
T Consensus 286 ~Ei~~NpRsRSAkLRv~~k~ 305 (305)
T TIGR00006 286 EEIKENPRSRSAKLRVAEKK 305 (305)
T ss_pred HHHHhCccHHhhhheeEEeC
Confidence 99999999999999999985
No 4
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=100.00 E-value=8.6e-108 Score=814.81 Aligned_cols=295 Identities=46% Similarity=0.676 Sum_probs=271.1
Q ss_pred CCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954 114 SSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH 193 (452)
Q Consensus 114 ~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~ 193 (452)
+.|+|||++|||+.|. ++|+++|||||+|+||||.+||+.+++.++|||||+|++|++.|+++|++ . .|++
T Consensus 1 ~~H~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~-------~ri~ 71 (296)
T PRK00050 1 FKHIPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F-------GRFT 71 (296)
T ss_pred CCCccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C-------CcEE
Confidence 3699999999999997 57999999999999999999999998678999999999999999998865 2 2899
Q ss_pred EEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954 194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGR 273 (452)
Q Consensus 194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~ 273 (452)
+++++|+++..++.+ + ...||||+|||||||||||+++|||||+.|||||||||++.++||+||||+||+++|++
T Consensus 72 ~i~~~f~~l~~~l~~-~----~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~ 146 (296)
T PRK00050 72 LVHGNFSNLKEVLAE-G----LGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELAR 146 (296)
T ss_pred EEeCCHHHHHHHHHc-C----CCccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHH
Confidence 999999999888865 3 23699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012954 274 VLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHAC 353 (452)
Q Consensus 274 Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a 353 (452)
||++||||++|++||++||++|+++||+||.||+++|..++|. +++++||||||||||||+|||||++|+++|+++
T Consensus 147 i~~~yGee~~a~~iA~~Iv~~R~~~~~~tt~~L~~~i~~~~~~----~~~~~hpatr~FQAlRI~VN~El~~L~~~L~~~ 222 (296)
T PRK00050 147 IFKEYGEERFARRIARAIVEARPKKPITTTGELAEIIKSAVPP----RRKGIHPATRTFQALRIEVNDELEELERALEAA 222 (296)
T ss_pred HHHHhcCcchHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCc----cCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999992 134579999999999999999999999999999
Q ss_pred HHhhcCCCeEEEEeecchhHHHHHHHHHhhhccCCCccCCchhhhhcccccCcchhHHHHHhhCCcceeecCCCCCCCHH
Q 012954 354 FDCLAPGGRLGVISFHSLEDRIVKQTFLSIIDHNREDAEGNEEELRNIRDDNINETWIRQIIQGWNGKILTKRPITPSAE 433 (452)
Q Consensus 354 ~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltkKpi~Ps~e 433 (452)
+++|+|||||+|||||||||||||+||+++...+ + . ..+.++++|||||+||++
T Consensus 223 ~~~L~~gGrl~visfHSlEDriVK~~f~~~~~~~--~---------------~---------~~~~~~~~~~k~i~ps~~ 276 (296)
T PRK00050 223 LDLLKPGGRLAVISFHSLEDRIVKRFFRELSKGC--C---------------G---------NKPKLKLLTKKPIKPSEE 276 (296)
T ss_pred HHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccc--c---------------c---------cCCceEEcCCCCcCCCHH
Confidence 9999999999999999999999999999875431 0 0 112357899999999999
Q ss_pred HHHhCcCccccccceeEeC
Q 012954 434 EERLNCRCRSAKLRVIQKI 452 (452)
Q Consensus 434 Ei~~NpRSRSAKLRv~eK~ 452 (452)
||+.|||||||||||++|+
T Consensus 277 Ei~~NpRsRSAkLR~~~k~ 295 (296)
T PRK00050 277 EIAANPRARSAKLRVAERL 295 (296)
T ss_pred HHHhCcchHhhhheEEEec
Confidence 9999999999999999985
No 5
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=8.7e-81 Score=593.49 Aligned_cols=283 Identities=63% Similarity=0.965 Sum_probs=258.1
Q ss_pred cchhccccccCCccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCC
Q 012954 88 MGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVD 167 (452)
Q Consensus 88 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD 167 (452)
+...++|+||| -|+-..+ +.-...|+|||++||+++|++ .++++|+|||||+||||..||++.++. ++|++|+|
T Consensus 3 ~~~n~~k~r~~---~~~~a~~-d~~~~~HVPVm~devl~~lsp-v~g~sf~DmTfGagGHt~~ilqk~se~-k~yalDrD 76 (303)
T KOG2782|consen 3 AVVNKEKRRTR---GYELADG-DEVPSSHVPVMLDEVLDILSP-VRGRSFVDMTFGAGGHTSSILQKHSEL-KNYALDRD 76 (303)
T ss_pred cccChHhhhcc---ceeeccc-ccccccCCceehhhHHHHcCC-CCCceEEEEeccCCcchHHHHHhCcHh-hhhhhccC
Confidence 44568899998 3443333 445667999999999999984 699999999999999999999999996 59999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCCCCCC
Q 012954 168 PSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPL 247 (452)
Q Consensus 168 ~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPL 247 (452)
|.|.+.|....++.-. .++..+.+||+++++++++.+ +...+|||||||||+||||+|+|+||||..+||||
T Consensus 77 P~A~~La~~~s~el~~------~~l~a~Lg~Fs~~~~l~~~~g--l~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpL 148 (303)
T KOG2782|consen 77 PVARKLAHFHSDELMH------PTLKAVLGNFSYIKSLIADTG--LLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPL 148 (303)
T ss_pred hHHHHHHHHhhHhhcc------hhHHHHHhhhHHHHHHHHHhC--CCcCCcceEEeecCccccccCCccccceeeccCCc
Confidence 9999999877644322 255568999999999999876 45678999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhCCCCcCCCCCccch
Q 012954 248 DMRMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVTPGMRGRRQGWIKT 327 (452)
Q Consensus 248 DMRMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~p~~~~~~~~~~hp 327 (452)
|||||+....+|.+++|+|+|.||.+|+|.||||++|++||+.||++|..+.|+||.||+++|+..-|.++..+++|+|.
T Consensus 149 DMRMDgg~s~g~~~~~~~~~e~~l~rvlr~ygee~~~~~l~~~iv~ar~~~~l~st~~l~dli~~~~~~~r~~~~~~~~t 228 (303)
T KOG2782|consen 149 DMRMDGGASLGAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKT 228 (303)
T ss_pred ceeecCCCccceeeeecccchhhHHHHHHHhhhhhHHHHHHhhhHHhhhccccccchhHHHHhccCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999989888889999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhh
Q 012954 328 ATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSII 384 (452)
Q Consensus 328 ATR~FQALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~ 384 (452)
|||+||+|||+|||||++|...|--+.++|.||||+++|||||||||+||+.|....
T Consensus 229 atk~fqg~ri~vnnel~~~~~~~~l~~~vl~~~grl~~isfhSLed~vvkr~~~~i~ 285 (303)
T KOG2782|consen 229 ATKVFQGLRIAVNNELKTLQNSLYLSFDVLAPGGRLAVISFHSLEDRVVKRTFLDIL 285 (303)
T ss_pred cchhhhhHHHHhhhhhhhccCceeccccccCCCccEEEEEhhhHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999998753
No 6
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.82 E-value=3.6e-09 Score=96.31 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=45.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+|||||+|++||+.|+++|++.+. ..|+++++++|++|++++++ ..||+++|||||=
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~-------~~v~~~iFNLGYL 57 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPE-------GPVDAAIFNLGYL 57 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S---------EEEEEEEESB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCcc-------CCcCEEEEECCcC
Confidence 589999999999999999998764 34899999999999988875 2699999999993
No 7
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.53 E-value=5.8e-06 Score=81.54 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=79.4
Q ss_pred CccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 99 SNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 99 ~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
.-.+|..+.+..++...-.++ ..|. ++++..++|+..|.||.|..|.+.+++.+.|+|+|+++..++.+++++
T Consensus 44 ~~~~~~~G~~~~qd~~s~~~~------~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~ 116 (264)
T TIGR00446 44 STPEYLSGLYYIQEASSMIPP------LALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI 116 (264)
T ss_pred cChhHhCCeEEEECHHHHHHH------HHhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 334566665555555444333 2444 468899999999999999999998877788999999999999999999
Q ss_pred hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+..+. .++.+++.+...+... ...+|.||+|-=+|
T Consensus 117 ~~~g~------~~v~~~~~D~~~~~~~---------~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 117 NRCGV------LNVAVTNFDGRVFGAA---------VPKFDAILLDAPCS 151 (264)
T ss_pred HHcCC------CcEEEecCCHHHhhhh---------ccCCCEEEEcCCCC
Confidence 87653 2577777776544211 12599999998766
No 8
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.40 E-value=2.6e-06 Score=71.98 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI 213 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l 213 (452)
|..++|...|.|-=+.++++.. ...++|+|+|+.+++.|+.++...+. ..++.++++++..+.+.+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~------ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLP------ 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCT------
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhcc------
Confidence 4579999999997777777766 35799999999999999998877643 2478999999877653332
Q ss_pred cccCccEEEEccCCCcc
Q 012954 214 LRSGVDAILMDLGMSSM 230 (452)
Q Consensus 214 ~~~~VDGILfDLGvSS~ 230 (452)
...+|.|++|.=|...
T Consensus 68 -~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 68 -DGKFDLIVTNPPYGPR 83 (117)
T ss_dssp -TT-EEEEEE--STTSB
T ss_pred -CceeEEEEECCCCccc
Confidence 2479999999988643
No 9
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.03 E-value=2.4e-05 Score=74.45 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=74.1
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
.|.++..+++.|. .+++..++|...|.|..+..+.+..+..++|+|+|+++++++.|+++++.++. .++++++
T Consensus 62 ~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~ 134 (215)
T TIGR00080 62 APHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIV 134 (215)
T ss_pred hHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEE
Confidence 4678899999997 57899999999999999988887776667899999999999999999987653 2678888
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++.... +.. ...+|.|++|.
T Consensus 135 ~d~~~~---~~~------~~~fD~Ii~~~ 154 (215)
T TIGR00080 135 GDGTQG---WEP------LAPYDRIYVTA 154 (215)
T ss_pred CCcccC---Ccc------cCCCCEEEEcC
Confidence 776432 111 13699999874
No 10
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.99 E-value=4.5e-05 Score=70.20 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=57.1
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
+++.++|.-.|.|-=+..+++..+.. +|+++|+++.|++.|++.++..+. . .+++++.+..+ ..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~-----~-~v~~~~~d~~~------~~--- 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGL-----E-NVEVVQSDLFE------AL--- 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTC-----T-TEEEEESSTTT------TC---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCc-----c-ccccccccccc------cc---
Confidence 56899999999998888888877763 599999999999999998877643 1 27777766432 11
Q ss_pred ccccCccEEEEccC
Q 012954 213 ILRSGVDAILMDLG 226 (452)
Q Consensus 213 l~~~~VDGILfDLG 226 (452)
....+|.|+.|-=
T Consensus 95 -~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 95 -PDGKFDLIVSNPP 107 (170)
T ss_dssp -CTTCEEEEEE---
T ss_pred -cccceeEEEEccc
Confidence 1247999999865
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.96 E-value=0.00032 Score=70.17 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=66.2
Q ss_pred cchHHHHh-hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 119 VMLGEVLD-VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 119 VLl~Evl~-~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
+++.+++. .+. ..++..++|...|.|..+.++++..++ .+++|+|+++.|++.|+++.+.++. ..++.++++
T Consensus 107 ~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~ 179 (284)
T TIGR03533 107 ELIEDGFAPWLE-PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQS 179 (284)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEC
Confidence 56666665 342 234578999999999999999988876 4799999999999999998876543 136888887
Q ss_pred CcchHHHHHhhhcccccccCccEEEEc
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
+... .+. ...+|.|+.|
T Consensus 180 D~~~---~~~-------~~~fD~Iv~N 196 (284)
T TIGR03533 180 DLFA---ALP-------GRKYDLIVSN 196 (284)
T ss_pred chhh---ccC-------CCCccEEEEC
Confidence 7521 111 1358999988
No 12
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=6.9e-05 Score=79.26 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=72.1
Q ss_pred hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH
Q 012954 127 VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL 206 (452)
Q Consensus 127 ~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L 206 (452)
.|. +.++..++|++.|.||-|..+++..++.+.|+|+|+++..++.++++++..+. .++++++.+...+...+
T Consensus 232 ~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 232 LME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYV 304 (431)
T ss_pred HhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhh
Confidence 344 56889999999999999999999987778999999999999999999987653 25777787766554332
Q ss_pred hhhcccccccCccEEEEccCCCcc
Q 012954 207 GQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 207 ~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
. ..+|.||+|-=+|+.
T Consensus 305 ~--------~~fD~Vl~DaPCsg~ 320 (431)
T PRK14903 305 Q--------DTFDRILVDAPCTSL 320 (431)
T ss_pred h--------ccCCEEEECCCCCCC
Confidence 2 369999999888864
No 13
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.92 E-value=0.00014 Score=73.83 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=64.8
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|..-++.... .+++..++|.-+|.|+...+... . ...++|+|+|+.+++.|+++++.++.. .+.+++.+
T Consensus 169 ~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~------~i~~~~~D 238 (329)
T TIGR01177 169 KLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIE------DFFVKRGD 238 (329)
T ss_pred HHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCC------CCeEEecc
Confidence 34444444444 46888999999999988766433 2 246999999999999999999887642 36778888
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
+.++.. ....+|.|+.|-=|
T Consensus 239 ~~~l~~---------~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 239 ATKLPL---------SSESVDAIATDPPY 258 (329)
T ss_pred hhcCCc---------ccCCCCEEEECCCC
Confidence 876421 12369999999544
No 14
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.86 E-value=7.9e-05 Score=78.67 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=69.3
Q ss_pred hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH
Q 012954 127 VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL 206 (452)
Q Consensus 127 ~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L 206 (452)
.|. +.++..++|+..|.||.|..+++.+++.++|+|+|+++.+++.++++++.++. .++.++++++..+...+
T Consensus 245 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 245 ALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKF 317 (444)
T ss_pred HhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchh
Confidence 444 45788999999999999999999886567899999999999999999987653 25888888876643222
Q ss_pred hhhcccccccCccEEEEccCCC
Q 012954 207 GQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 207 ~~~~~~l~~~~VDGILfDLGvS 228 (452)
. ..+|.|++|--+|
T Consensus 318 ~--------~~fD~Vl~D~Pcs 331 (444)
T PRK14902 318 A--------EKFDKILVDAPCS 331 (444)
T ss_pred c--------ccCCEEEEcCCCC
Confidence 1 3699999997665
No 15
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.85 E-value=4e-05 Score=71.61 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=79.4
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
.+++|+|.|.||.+.++.... .+|+|+|+|+.-++.|+.+.+-|+- ..++.+++++|.++. ....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~---~~~~---- 65 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELL---KRLK---- 65 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHG---GGB-----
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHH---hhcc----
Confidence 378999999999999999874 3699999999999999999999874 248999999998743 3221
Q ss_pred ccC-ccEEEEccCCCccCCCCCCCCcccCCCCCCcc--cCCCCCCCCHHHHHhcCChHHHHHHHHHhCCCcchHHHHHHH
Q 012954 215 RSG-VDAILMDLGMSSMQVNNPERGFSVLGDGPLDM--RMDPQASLKAEDILNSWPDAEVGRVLREYGEESNWHLLQNKI 291 (452)
Q Consensus 215 ~~~-VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDM--RMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE~~A~rIA~aI 291 (452)
... +|.|++| -|=-|-+|......|+ .|.| . .|.++++. +.+++..|
T Consensus 66 ~~~~~D~vFlS---------PPWGGp~Y~~~~~fdL~~~~~p---~------------~~~~l~~~------~~~~t~nv 115 (163)
T PF09445_consen 66 SNKIFDVVFLS---------PPWGGPSYSKKDVFDLEKSMQP---F------------NLEDLLKA------ARKITPNV 115 (163)
T ss_dssp -----SEEEE------------BSSGGGGGSSSB-TTTSSSS-----------------HHHHHHH------HHHH-S-E
T ss_pred ccccccEEEEC---------CCCCCccccccCccCHHHccCC---C------------CHHHHHHH------HHhhCCCE
Confidence 112 6888764 3445688888777777 4443 2 33344443 56666665
Q ss_pred HHHHhhCCCCcHHHHHHHHHhhC
Q 012954 292 VQARLRGGLHSTGELVDLIQSVT 314 (452)
Q Consensus 292 v~~R~~~~i~TT~eLa~iI~~~~ 314 (452)
+-.-- +=....||+++..+..
T Consensus 116 ~l~LP--Rn~dl~ql~~~~~~l~ 136 (163)
T PF09445_consen 116 VLFLP--RNSDLNQLSQLTRELF 136 (163)
T ss_dssp EEEEE--TTB-HHHHHHT----T
T ss_pred EEEeC--CCCCHHHHHHHhcccc
Confidence 53211 1235566766655543
No 16
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.84 E-value=8.9e-05 Score=70.33 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=74.6
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
.|-++..+++.|. +.++..++|.-.|.|..+..+.+.++..++|+|+|+++++++.|+++++..+. ..++++++
T Consensus 57 ~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~ 130 (205)
T PRK13944 57 APHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYH 130 (205)
T ss_pred hHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEE
Confidence 4667888999997 46889999999999988877777776567899999999999999998876543 23678888
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
+++.+. +.. ...+|.|+++.++
T Consensus 131 ~d~~~~---~~~------~~~fD~Ii~~~~~ 152 (205)
T PRK13944 131 GDGKRG---LEK------HAPFDAIIVTAAA 152 (205)
T ss_pred CCcccC---Ccc------CCCccEEEEccCc
Confidence 877542 111 1369999998653
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.84 E-value=0.00029 Score=65.45 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=64.7
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.....+++.+. ..++..++|...|.|..+..+++.++..++++|+|+++.+++.+++++. . ..++.+++.+
T Consensus 26 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------~~~i~~~~~d 96 (223)
T TIGR01934 26 LWRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------PLNIEFIQAD 96 (223)
T ss_pred HHHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------CCCceEEecc
Confidence 34456677775 3478899999999999999999888764579999999999999988765 1 1256677777
Q ss_pred cchHHHHHhhhcccccccCccEEEEcc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+.++. .. ...+|.|++..
T Consensus 97 ~~~~~--~~-------~~~~D~i~~~~ 114 (223)
T TIGR01934 97 AEALP--FE-------DNSFDAVTIAF 114 (223)
T ss_pred hhcCC--CC-------CCcEEEEEEee
Confidence 65432 11 13588876543
No 18
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.82 E-value=0.00064 Score=68.95 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=65.4
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.++.+++..+....+...++|...|.|..+..++...|. ..|+|+|+++.|++.|+++++.++. ..++++++++
T Consensus 119 ~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D 192 (307)
T PRK11805 119 ELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESD 192 (307)
T ss_pred HHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECc
Confidence 355666653321222368999999999999999988876 4699999999999999998876543 2368888887
Q ss_pred cchHHHHHhhhcccccccCccEEEEc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
+.. .+. ...+|.|+.|
T Consensus 193 ~~~---~l~-------~~~fDlIvsN 208 (307)
T PRK11805 193 LFA---ALP-------GRRYDLIVSN 208 (307)
T ss_pred hhh---hCC-------CCCccEEEEC
Confidence 532 121 1358999988
No 19
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.80 E-value=0.0001 Score=70.48 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=75.1
Q ss_pred CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT 194 (452)
Q Consensus 115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l 194 (452)
.-.|-|...+++.+. ..++..++|...|.|..|..+.+..+..++|+|+|++++.++.|+++++..+. .++++
T Consensus 59 ~~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~ 131 (212)
T PRK13942 59 ISAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEV 131 (212)
T ss_pred eCcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEE
Confidence 356788999999997 57899999999999988877776666667899999999999999999987643 36888
Q ss_pred EccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954 195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
++++..+. +.. ...+|.|+++..
T Consensus 132 ~~gd~~~~---~~~------~~~fD~I~~~~~ 154 (212)
T PRK13942 132 IVGDGTLG---YEE------NAPYDRIYVTAA 154 (212)
T ss_pred EECCcccC---CCc------CCCcCEEEECCC
Confidence 88886532 111 236999998644
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.79 E-value=0.00016 Score=60.35 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
|++.++|.=.|.|..+..+++..+. .+|+|+|.++++++.|+++...... ..+++++++++ . .....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~---~~~~~--- 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E---FDPDF--- 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H---GGTTT---
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c---cCccc---
Confidence 5788999999999999999997666 4699999999999999999844332 35899999998 2 11111
Q ss_pred ccccCccEEEEcc
Q 012954 213 ILRSGVDAILMDL 225 (452)
Q Consensus 213 l~~~~VDGILfDL 225 (452)
...+|.|+.+.
T Consensus 68 --~~~~D~v~~~~ 78 (112)
T PF12847_consen 68 --LEPFDLVICSG 78 (112)
T ss_dssp --SSCEEEEEECS
T ss_pred --CCCCCEEEECC
Confidence 23699999888
No 21
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.74 E-value=0.00022 Score=67.65 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=82.4
Q ss_pred cccCCccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHH
Q 012954 95 RRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174 (452)
Q Consensus 95 ~r~~~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~A 174 (452)
||.-+.+++++.+. ..+..-+|=|..+..+.+. .++..++|.-+|.|.++..+++..|. ..|+|+|.++++++.|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a 80 (202)
T PRK00121 6 RRRGRLTKGQQRAI--EELWPRLSPAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKA 80 (202)
T ss_pred hhccccccchhhhh--cccchhhcCCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHH
Confidence 34445667776644 2333344446777777775 37789999999999999999988776 4699999999999999
Q ss_pred HHHHhhhccCCCCCCceEEEEccCc-chHHHHHhhhcccccccCccEEEEcc
Q 012954 175 RAHLNSLLHGQAHPHLKTHTFAKNF-RHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 175 k~rL~~~~~~~~~~~~r~~li~~nF-~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+++++..+. .++.+++++. ..+...+. ...+|.|++++
T Consensus 81 ~~~~~~~~~------~~v~~~~~d~~~~l~~~~~-------~~~~D~V~~~~ 119 (202)
T PRK00121 81 LKKIEEEGL------TNLRLLCGDAVEVLLDMFP-------DGSLDRIYLNF 119 (202)
T ss_pred HHHHHHcCC------CCEEEEecCHHHHHHHHcC-------ccccceEEEEC
Confidence 988866432 3688899988 66654432 23699998764
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.73 E-value=0.0002 Score=67.96 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
+++++.+. ..++..++|+-.|.|.-+..+.+..++.+.|+|+|+++.+++.|+++++.... .++.+++++...
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME 107 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc
Confidence 66777776 46788999999999999998888876667899999999999999998865432 367888887755
Q ss_pred HHHHHhhhcccccccCccEEEEccCC
Q 012954 202 IKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 202 i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
+. + ....+|.|++++++
T Consensus 108 ~~--~-------~~~~fD~V~~~~~l 124 (231)
T TIGR02752 108 LP--F-------DDNSFDYVTIGFGL 124 (231)
T ss_pred CC--C-------CCCCccEEEEeccc
Confidence 32 1 12469999987554
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.73 E-value=0.00023 Score=59.97 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=65.7
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
...+++.+. ..++..++|.-.|.|.++..+++..|+ ++|+|+|.++.+++.+++.++.++. .+++++.++..
T Consensus 8 ~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~ 79 (124)
T TIGR02469 8 RALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAP 79 (124)
T ss_pred HHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEecccc
Confidence 344566665 346789999999999999999998877 5799999999999999988876643 25777776654
Q ss_pred hHHHHHhhhcccccccCccEEEEcc
Q 012954 201 HIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+. +... ...+|.|+.+.
T Consensus 80 ~~---~~~~-----~~~~D~v~~~~ 96 (124)
T TIGR02469 80 EA---LEDS-----LPEPDRVFIGG 96 (124)
T ss_pred cc---Chhh-----cCCCCEEEECC
Confidence 32 1111 13699998854
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.68 E-value=0.00057 Score=64.78 Aligned_cols=74 Identities=16% Similarity=0.018 Sum_probs=58.8
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
++..++|.-.|.|..+..++...+. ++|+|+|.++++++.|+++++..+. .++++++++..++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-------- 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-------- 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC--------
Confidence 4789999999999888888877765 5799999999999999998877643 248888887765321
Q ss_pred ccccCccEEEE
Q 012954 213 ILRSGVDAILM 223 (452)
Q Consensus 213 l~~~~VDGILf 223 (452)
...+|.|+.
T Consensus 110 --~~~fDlV~~ 118 (187)
T PRK00107 110 --EEKFDVVTS 118 (187)
T ss_pred --CCCccEEEE
Confidence 136999996
No 25
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.67 E-value=0.00036 Score=65.56 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=70.0
Q ss_pred ccccchHHHH----hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 116 HIPVMLGEVL----DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 116 H~PVLl~Evl----~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
|.|+.-.|+- ..+. ..++..++|...|.|..+.+++...+..++|+|+|+++.+++.|+++++.++. ..+
T Consensus 20 ~~~~t~~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~ 93 (198)
T PRK00377 20 EIPMTKEEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNN 93 (198)
T ss_pred CCCCCHHHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCC
Confidence 6775545542 3333 35889999999999999999988776667899999999999999998877652 136
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+.++++++.+. +.... ..+|.|+.+.
T Consensus 94 v~~~~~d~~~~---l~~~~-----~~~D~V~~~~ 119 (198)
T PRK00377 94 IVLIKGEAPEI---LFTIN-----EKFDRIFIGG 119 (198)
T ss_pred eEEEEechhhh---HhhcC-----CCCCEEEECC
Confidence 78888776542 33221 3689998753
No 26
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.66 E-value=0.00023 Score=75.13 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=72.2
Q ss_pred HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954 125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS 204 (452)
Q Consensus 125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~ 204 (452)
...|. ++++..++|+..|.||-|..|++..++.++|+|+|+++..++.++++++.++. .++++++.+...+..
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLE 317 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccc
Confidence 34554 46889999999999999999999887778999999999999999999988754 258888887765532
Q ss_pred HHhhhcccccccCccEEEEccCCCc
Q 012954 205 VLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 205 ~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
.... ....+|.||+|-=+|.
T Consensus 318 ~~~~-----~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 318 LKPQ-----WRGYFDRILLDAPCSG 337 (434)
T ss_pred cccc-----ccccCCEEEEeCCCCc
Confidence 2111 0236999999977665
No 27
>PRK14968 putative methyltransferase; Provisional
Probab=97.59 E-value=0.0031 Score=57.24 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=58.3
Q ss_pred HhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH
Q 012954 125 LDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS 204 (452)
Q Consensus 125 l~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~ 204 (452)
++.+. ..++..++|...|.|..+..+++. . ..++|+|+++++++.+++++...+.. ..++.+++.++..
T Consensus 16 ~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~--- 84 (188)
T PRK14968 16 AENAV-DKKGDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFE--- 84 (188)
T ss_pred HHhhh-ccCCCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccc---
Confidence 34443 247789999999999988888876 2 57999999999999999887654321 0015666655422
Q ss_pred HHhhhcccccccCccEEEEccCC
Q 012954 205 VLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 205 ~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.+. ...+|.|++|..|
T Consensus 85 ~~~-------~~~~d~vi~n~p~ 100 (188)
T PRK14968 85 PFR-------GDKFDVILFNPPY 100 (188)
T ss_pred ccc-------ccCceEEEECCCc
Confidence 111 1258889887654
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.49 E-value=0.00043 Score=61.88 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=62.6
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
.+..++|.-+|.|..+..+++.+.+.+.++|+|.++++++.|+++++..+. .++++++++..+++..+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~----- 71 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE----- 71 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-----
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-----
Confidence 567999999999988888886655557899999999999999998877653 379999999887532211
Q ss_pred ccccCccEEEEccC
Q 012954 213 ILRSGVDAILMDLG 226 (452)
Q Consensus 213 l~~~~VDGILfDLG 226 (452)
..+|.|+.+..
T Consensus 72 ---~~~D~I~~~~~ 82 (152)
T PF13847_consen 72 ---EKFDIIISNGV 82 (152)
T ss_dssp ---TTEEEEEEEST
T ss_pred ---CCeeEEEEcCc
Confidence 36999888833
No 29
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.48 E-value=0.00056 Score=69.20 Aligned_cols=97 Identities=11% Similarity=0.227 Sum_probs=79.0
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.|+-+-|.+++.+++.+. ..++..++|.-.|.|..|..+++.. .+|+|+|+|+.+++.+++++..++. ..+
T Consensus 16 QnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~-----~~~ 86 (294)
T PTZ00338 16 QHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPL-----ASK 86 (294)
T ss_pred ccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCC-----CCc
Confidence 667788999999999997 4688999999999999999999863 3599999999999999998876432 237
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
++++++++-.++ + ..+|.|+.||-|.
T Consensus 87 v~ii~~Dal~~~--~---------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTE--F---------PYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhc--c---------cccCEEEecCCcc
Confidence 899999886532 1 2478899888874
No 30
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.46 E-value=0.0005 Score=70.46 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=75.5
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
-.|.|+..+++.+. .+++..++|...|.|.-+..+.+..+..+.|+|+|+++++++.|++.++..+. .+++++
T Consensus 64 ~~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i 136 (322)
T PRK13943 64 SQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFV 136 (322)
T ss_pred CcHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEE
Confidence 36889999999986 46889999999999877777776676556799999999999999998877643 367778
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+++... .+... ..+|.|+++.|+..
T Consensus 137 ~gD~~~---~~~~~------~~fD~Ii~~~g~~~ 161 (322)
T PRK13943 137 CGDGYY---GVPEF------APYDVIFVTVGVDE 161 (322)
T ss_pred eCChhh---ccccc------CCccEEEECCchHH
Confidence 776532 22211 35999999988654
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.45 E-value=0.0011 Score=61.92 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=58.0
Q ss_pred cccchHHHH----hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954 117 IPVMLGEVL----DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT 192 (452)
Q Consensus 117 ~PVLl~Evl----~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~ 192 (452)
+|+.-.|+- +.|. ..+++.++|.-.|.|.++..++...+. ++|+|+|+|+++++.++++++.++. .++
T Consensus 21 ~p~t~~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~------~~v 92 (196)
T PRK07402 21 IPLTKREVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGV------KNV 92 (196)
T ss_pred CCCCHHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC------CCe
Confidence 455544443 3443 457889999999999999999876665 5799999999999999998887643 257
Q ss_pred EEEccCcc
Q 012954 193 HTFAKNFR 200 (452)
Q Consensus 193 ~li~~nF~ 200 (452)
++++++..
T Consensus 93 ~~~~~d~~ 100 (196)
T PRK07402 93 EVIEGSAP 100 (196)
T ss_pred EEEECchH
Confidence 77777653
No 32
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.43 E-value=0.00079 Score=70.95 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=69.4
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK 203 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~ 203 (452)
++..|. +.++..++|+..|.||.|..+++..+. ++|+|+|+++.+++.++++++.++. ++++++.+..++.
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~ 306 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPA 306 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccch
Confidence 344554 468899999999999999999998865 6899999999999999999887643 3566777666543
Q ss_pred HHHhhhcccccccCccEEEEccCCCc
Q 012954 204 SVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 204 ~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
..+. ...+|.|++|-=+|.
T Consensus 307 ~~~~-------~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 307 QWWD-------GQPFDRILLDAPCSA 325 (427)
T ss_pred hhcc-------cCCCCEEEECCCCCc
Confidence 3221 136999999988763
No 33
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.40 E-value=0.00096 Score=71.74 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=84.1
Q ss_pred CccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 99 SNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 99 ~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
....|..+.+..|+.....||.+-. +. ++++..++|++.|-||=|.+|++.+++.|.|+|.|+++.=++..++++
T Consensus 84 ~~~~~~~G~~yvQd~sS~l~~~~L~----~~-~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl 158 (470)
T PRK11933 84 NTAEHLSGLFYIQEASSMLPVAALF----AD-DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANI 158 (470)
T ss_pred cChHHHCCcEEEECHHHHHHHHHhc----cC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3445666766666666666554211 13 468999999999999999999999988889999999999999999999
Q ss_pred hhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 179 NSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 179 ~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+.++. .++.+.+.+-..+...+. ..+|.||+|-=+|.
T Consensus 159 ~r~G~------~nv~v~~~D~~~~~~~~~--------~~fD~ILvDaPCSG 195 (470)
T PRK11933 159 SRCGV------SNVALTHFDGRVFGAALP--------ETFDAILLDAPCSG 195 (470)
T ss_pred HHcCC------CeEEEEeCchhhhhhhch--------hhcCeEEEcCCCCC
Confidence 98864 256666655544433222 35999999999986
No 34
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.37 E-value=0.00058 Score=65.97 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
.|-|.-.+++.|. .+|+..++|.-.|.| +..++|.. .++.++|+++|+|+...+.|+++|+..+. .++.++
T Consensus 57 ~P~~~a~~l~~L~-l~pg~~VLeIGtGsG-Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~ 128 (209)
T PF01135_consen 57 APSMVARMLEALD-LKPGDRVLEIGTGSG-YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVV 128 (209)
T ss_dssp -HHHHHHHHHHTT-C-TT-EEEEES-TTS-HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEE
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEecCCCc-HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEE
Confidence 4779999999998 689999999999998 77788877 46677899999999999999999998754 378888
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+++-..- +.+ ...+|.|++.-++..
T Consensus 129 ~gdg~~g---~~~------~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 129 VGDGSEG---WPE------EAPFDRIIVTAAVPE 153 (209)
T ss_dssp ES-GGGT---TGG------G-SEEEEEESSBBSS
T ss_pred Ecchhhc---ccc------CCCcCEEEEeeccch
Confidence 8765321 111 236999999988864
No 35
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.37 E-value=0.0011 Score=70.37 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=67.8
Q ss_pred hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954 126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV 205 (452)
Q Consensus 126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~ 205 (452)
..|. +.++..++|+..|.||-|..+.+.+++.++|+|+|+++.+++.++++++..+. .++.+++.+...+.
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 244 LLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS-- 314 (445)
T ss_pred HhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc--
Confidence 3454 45888999999999999999998877667899999999999999999987653 25777776654431
Q ss_pred HhhhcccccccCccEEEEccCCCc
Q 012954 206 LGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 206 L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
. ...+|.|++|--+|.
T Consensus 315 -~-------~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 315 -P-------EEQPDAILLDAPCTG 330 (445)
T ss_pred -c-------CCCCCEEEEcCCCCC
Confidence 1 136999999966654
No 36
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.35 E-value=0.001 Score=69.97 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=67.9
Q ss_pred HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954 123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI 202 (452)
Q Consensus 123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i 202 (452)
-+...|. +.++..++|+..|.||-|..+++..+ .++|+|+|+++..++.++++++.++. ..+++++.++-..+
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGP 301 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeccccccc
Confidence 3455565 46889999999999999999999887 57899999999999999999987653 12344444432222
Q ss_pred HHHHhhhcccccccCccEEEEccCCCcc
Q 012954 203 KSVLGQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 203 ~~~L~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
.... ....+|.|+.|==+|+.
T Consensus 302 ~~~~-------~~~~fD~VllDaPcSg~ 322 (426)
T TIGR00563 302 SQWA-------ENEQFDRILLDAPCSAT 322 (426)
T ss_pred cccc-------cccccCEEEEcCCCCCC
Confidence 1110 12369999999777764
No 37
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.32 E-value=0.0012 Score=69.93 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=71.4
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
..+|++++++++. ..++..++|+-.|.|..+..+++.. .+|+|+|++++|++.|+++++..+. .++++++
T Consensus 282 ~e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~ 351 (443)
T PRK13168 282 NQKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYH 351 (443)
T ss_pred HHHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEE
Confidence 3568999999996 4578899999999999999988764 4699999999999999998765532 2578888
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
++..+. +.... +....+|.|++|-=+
T Consensus 352 ~d~~~~---l~~~~--~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 352 ANLEED---FTDQP--WALGGFDKVLLDPPR 377 (443)
T ss_pred eChHHh---hhhhh--hhcCCCCEEEECcCC
Confidence 877542 21110 011358999887544
No 38
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.24 E-value=0.0021 Score=62.69 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=74.1
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
++|....+.+..|....+.+.++|.-.|.|.=+..|+..+++.++|+++|+|+++++.|++.++.++. ..+++++
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~ 125 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFI 125 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEE
Confidence 55666666676665444678999999999966777877788778999999999999999999988764 2478888
Q ss_pred ccCcchH-HHHHhhhcccccccCccEEEEcc
Q 012954 196 AKNFRHI-KSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 196 ~~nF~~i-~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+++..+. +.+... + ....+|.|++|-
T Consensus 126 ~gda~~~L~~l~~~-~---~~~~fD~VfiDa 152 (234)
T PLN02781 126 QSDALSALDQLLNN-D---PKPEFDFAFVDA 152 (234)
T ss_pred EccHHHHHHHHHhC-C---CCCCCCEEEECC
Confidence 8886543 222221 1 013699999874
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.22 E-value=0.0013 Score=54.80 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred EEEEccCCChhHHHHHHhCCC--CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 137 FVDCTLGAAGHSSAIIRAHPE--LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 137 yVDaTlG~GGHS~aIL~~~p~--~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
++|...|.|-++..+++.++. ...++|+|+++++++.++++....+ .++++++.++.++.. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~----~----- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPF----S----- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHH----H-----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcc----c-----
Confidence 589999999999999998722 2579999999999999998876532 257789999988752 1
Q ss_pred ccCccEEEE
Q 012954 215 RSGVDAILM 223 (452)
Q Consensus 215 ~~~VDGILf 223 (452)
...+|.|+.
T Consensus 65 ~~~~D~v~~ 73 (101)
T PF13649_consen 65 DGKFDLVVC 73 (101)
T ss_dssp SSSEEEEEE
T ss_pred CCCeeEEEE
Confidence 236998888
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.20 E-value=0.0038 Score=57.89 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred ccccchHH----HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 116 HIPVMLGE----VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 116 H~PVLl~E----vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
++|+...+ +++.|. ..++..++|.-.|.|.++..+++..+. ++|+|+|+++.+++.|+++++.++. .+
T Consensus 11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~------~~ 82 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGC------GN 82 (187)
T ss_pred CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCC------CC
Confidence 44544444 345565 357889999999999999999988766 5799999999999999988876542 25
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEE
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILM 223 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILf 223 (452)
+++++++.. ..+ ...+|.|++
T Consensus 83 i~~~~~d~~---~~~--------~~~~D~v~~ 103 (187)
T PRK08287 83 IDIIPGEAP---IEL--------PGKADAIFI 103 (187)
T ss_pred eEEEecCch---hhc--------CcCCCEEEE
Confidence 777776542 111 135888886
No 41
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.18 E-value=0.0027 Score=63.81 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=70.5
Q ss_pred hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954 126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV 205 (452)
Q Consensus 126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~ 205 (452)
..|. +.++..++|++.|-||-|..|++..++.|.|+|.|+++.-+..-+++++.++. .++.++......+...
T Consensus 79 ~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 79 LALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPK 151 (283)
T ss_dssp HHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHH
T ss_pred cccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccccccc
Confidence 3455 56899999999999999999999998889999999999999999999988764 2566665444444322
Q ss_pred HhhhcccccccCccEEEEccCCCcc
Q 012954 206 LGQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 206 L~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
.. ...+|.||.|-=+|..
T Consensus 152 ~~-------~~~fd~VlvDaPCSg~ 169 (283)
T PF01189_consen 152 KP-------ESKFDRVLVDAPCSGL 169 (283)
T ss_dssp HH-------TTTEEEEEEECSCCCG
T ss_pred cc-------ccccchhhcCCCccch
Confidence 21 1259999999888864
No 42
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.11 E-value=0.0024 Score=63.20 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=73.7
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.--++.++.+. ..+|..++|+..|.|-=+..+.+..+ .+.|+|+|+.+..|+.|++++.+.+. ..+++++++
T Consensus 38 ~Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~d 109 (238)
T COG2226 38 LWRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGD 109 (238)
T ss_pred HHHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEec
Confidence 45678888886 45899999999999988888887788 57899999999999999999887543 138889999
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
..+|+ +. .+.+|.+.+.+|.
T Consensus 110 Ae~LP--f~-------D~sFD~vt~~fgl 129 (238)
T COG2226 110 AENLP--FP-------DNSFDAVTISFGL 129 (238)
T ss_pred hhhCC--CC-------CCccCEEEeeehh
Confidence 88875 22 2468888887775
No 43
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.10 E-value=0.0037 Score=59.83 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=69.5
Q ss_pred cccchHHHHh-----hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 117 IPVMLGEVLD-----VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 117 ~PVLl~Evl~-----~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.| |.+|-+. .|. +.|++.++|.=.|.|.=+..+. ...+.+++||+|+|++|++.++++.+.|+. .+
T Consensus 15 ~p-~TK~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n 85 (187)
T COG2242 15 GP-MTKEEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV------DN 85 (187)
T ss_pred CC-CcHHHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC------Cc
Confidence 46 6666544 455 5799999999999999999999 655668999999999999999999999874 37
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
++++.+.= .++|... ..+|.|++-=|
T Consensus 86 ~~vv~g~A---p~~L~~~------~~~daiFIGGg 111 (187)
T COG2242 86 LEVVEGDA---PEALPDL------PSPDAIFIGGG 111 (187)
T ss_pred EEEEeccc---hHhhcCC------CCCCEEEECCC
Confidence 88777653 2344432 25888877544
No 44
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.09 E-value=0.0022 Score=62.75 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=60.6
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
-+.+++.+. ..++..++|...|.|-=+..+++..++.++|+|+|..+..++.|+++++..+. .++++++++..
T Consensus 36 r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~ 108 (233)
T PF01209_consen 36 RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAE 108 (233)
T ss_dssp -SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTT
T ss_pred HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHH
Confidence 346777775 46889999999999955666777777778899999999999999999887543 37999999998
Q ss_pred hHHHHHhhhcccccccCccEEEEccCCC
Q 012954 201 HIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+++ +. .+.+|.|..=+|+-
T Consensus 109 ~lp--~~-------d~sfD~v~~~fglr 127 (233)
T PF01209_consen 109 DLP--FP-------DNSFDAVTCSFGLR 127 (233)
T ss_dssp B----S--------TT-EEEEEEES-GG
T ss_pred Hhc--CC-------CCceeEEEHHhhHH
Confidence 875 11 24799999877654
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.09 E-value=0.0034 Score=61.19 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=66.0
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
.++++.+. .++..++|.-.|.|..+..+++. + ..|+|+|.++++++.|++++...+. ..++++++++..+
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~-g--~~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~ 104 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL-G--HQVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD 104 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH
Confidence 46777774 35679999999999999888875 2 4699999999999999998876543 2368888888877
Q ss_pred HHHHHhhhcccccccCccEEEEccC
Q 012954 202 IKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 202 i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
+.... ...+|.|++...
T Consensus 105 l~~~~--------~~~fD~V~~~~v 121 (255)
T PRK11036 105 IAQHL--------ETPVDLILFHAV 121 (255)
T ss_pred Hhhhc--------CCCCCEEEehhH
Confidence 64322 136999987533
No 46
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.07 E-value=0.0037 Score=59.62 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=70.2
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
-|+..+++.+. ..+..++|...|.|..+..+++..+.. .++|+|+++.+++.|++.+...+. .++.+++++
T Consensus 75 ~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d 145 (251)
T TIGR03534 75 ELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDA-RVTAVDISPEALAVARKNAARLGL------DNVTFLQSD 145 (251)
T ss_pred HHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECc
Confidence 36667777774 245689999999999999999888764 699999999999999998876533 268888887
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
+... +. ...+|.|+.|.-|.+.
T Consensus 146 ~~~~---~~-------~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 146 WFEP---LP-------GGKFDLIVSNPPYIPE 167 (251)
T ss_pred hhcc---Cc-------CCceeEEEECCCCCch
Confidence 6431 11 2369999997665443
No 47
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.06 E-value=0.0036 Score=65.75 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=68.4
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
-.|++.+++++. ..++..++|+..|.|..+..+.+.. .+|+|+|.+++|++.|+++++..+. .+++++++
T Consensus 278 ~~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~ 347 (431)
T TIGR00479 278 EKLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAG 347 (431)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeC
Confidence 357788888886 4567899999999999998877653 4699999999999999998876542 37889999
Q ss_pred CcchHHHHHhhhcccccccCccEEEEcc
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+..+. +.... .....+|.|++|-
T Consensus 348 d~~~~---l~~~~--~~~~~~D~vi~dP 370 (431)
T TIGR00479 348 TLETV---LPKQP--WAGQIPDVLLLDP 370 (431)
T ss_pred CHHHH---HHHHH--hcCCCCCEEEECc
Confidence 88653 22210 0012589998654
No 48
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.04 E-value=0.016 Score=56.61 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=38.1
Q ss_pred CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.++..++|.-.|.|..+.++. +.+. .+|+|+|+|+.+++.|+++++.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~-~~g~-~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAA-KLGA-KKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHH-HcCC-CeEEEEECCHHHHHHHHHHHHH
Confidence 368899999999987776654 4544 3599999999999999987754
No 49
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.03 E-value=0.0038 Score=61.62 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954 123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI 202 (452)
Q Consensus 123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i 202 (452)
.+++.+. ..++..++|...|.|..+..+.+..++.+.|+|+|.++++++.|+++...... ....++++++++..++
T Consensus 64 ~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 64 MAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccC
Confidence 3445554 45788999999999998888887776556899999999999999876532110 0123677888877654
Q ss_pred HHHHhhhcccccccCccEEEEccCCCccCCCCCCC
Q 012954 203 KSVLGQIDENILRSGVDAILMDLGMSSMQVNNPER 237 (452)
Q Consensus 203 ~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~R 237 (452)
+ +..+.+|.|++.+++. .++++.+
T Consensus 140 p---------~~~~sfD~V~~~~~l~--~~~d~~~ 163 (261)
T PLN02233 140 P---------FDDCYFDAITMGYGLR--NVVDRLK 163 (261)
T ss_pred C---------CCCCCEeEEEEecccc--cCCCHHH
Confidence 2 1124699999887764 3455544
No 50
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.00 E-value=0.0033 Score=59.40 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=68.1
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
-.|-+...+++.|. ..++..++|...|.|..|..+. ... ++++++|+++++++.|+++++.++. .+++++
T Consensus 62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la-~~~--~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~ 131 (212)
T PRK00312 62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLA-HLV--RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVR 131 (212)
T ss_pred CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHH-HHh--CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEE
Confidence 46777778888887 4688999999999998876544 433 3699999999999999999887643 257777
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
++++.+. +.. ...+|.|++|-.
T Consensus 132 ~~d~~~~---~~~------~~~fD~I~~~~~ 153 (212)
T PRK00312 132 HGDGWKG---WPA------YAPFDRILVTAA 153 (212)
T ss_pred ECCcccC---CCc------CCCcCEEEEccC
Confidence 7775431 111 136999998753
No 51
>PRK14967 putative methyltransferase; Provisional
Probab=96.97 E-value=0.0062 Score=58.27 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=67.1
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
+.++-+++..+. ..++..++|.-.|.|.-+..+... +. ++++|+|+++.+++.|+++++..+. ++.++++
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~ 91 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV-------DVDVRRG 91 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEEC
Confidence 345667777665 357889999999999877776653 43 4799999999999999988765432 5677777
Q ss_pred CcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
++.. .+. ...+|.|+.|.+|...
T Consensus 92 d~~~---~~~-------~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 92 DWAR---AVE-------FRPFDVVVSNPPYVPA 114 (223)
T ss_pred chhh---hcc-------CCCeeEEEECCCCCCC
Confidence 6643 222 2369999998876543
No 52
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.97 E-value=0.0032 Score=62.55 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=74.1
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
+|-=+.=++..|. ..||..+|+|=-|.|.=|.+|+..+++.|+|+.||..++-.+.|++.++.++. ..++++.|
T Consensus 25 YpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~ 98 (247)
T PF08704_consen 25 YPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHH 98 (247)
T ss_dssp -HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEE
T ss_pred eCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEe
Confidence 3333555777886 57999999999999999999999987789999999999999999999998875 24788888
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEccCCCccCCCC
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNN 234 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd 234 (452)
.+..+- -..+ + + ...+|+|++||.=.-.-|+.
T Consensus 99 ~Dv~~~--g~~~-~--~-~~~~DavfLDlp~Pw~~i~~ 130 (247)
T PF08704_consen 99 RDVCEE--GFDE-E--L-ESDFDAVFLDLPDPWEAIPH 130 (247)
T ss_dssp S-GGCG----ST-T----TTSEEEEEEESSSGGGGHHH
T ss_pred cceecc--cccc-c--c-cCcccEEEEeCCCHHHHHHH
Confidence 776421 0111 0 0 14699999999755544443
No 53
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.96 E-value=0.0042 Score=62.85 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=65.5
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
|++.+.+++.. .++..++|+-.|.|..+..+.+. . ..|+|+|.++.|++.|++..+..+. .++++++++.
T Consensus 161 l~~~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~--~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~ 230 (315)
T PRK03522 161 LYATARDWVRE-LPPRSMWDLFCGVGGFGLHCATP--G-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHHh-cCCCEEEEccCCCCHHHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCH
Confidence 66667777752 35689999999999999888873 2 4699999999999999998876542 2688888887
Q ss_pred chHHHHHhhhcccccccCccEEEEc
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
..+. ... ...+|.|++|
T Consensus 231 ~~~~---~~~-----~~~~D~Vv~d 247 (315)
T PRK03522 231 TQFA---TAQ-----GEVPDLVLVN 247 (315)
T ss_pred HHHH---Hhc-----CCCCeEEEEC
Confidence 6543 211 1258999988
No 54
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.95 E-value=0.0053 Score=57.72 Aligned_cols=81 Identities=9% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
....++|.-+|.|..+..+++..|+. .++|+|+++.+++.|++++...+. .++.+++++...+...+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~-~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~---- 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDK-NFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFP---- 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCC----
Confidence 45799999999999999999988874 699999999999999988776533 2788999988765432211
Q ss_pred ccccCccEEEEccC
Q 012954 213 ILRSGVDAILMDLG 226 (452)
Q Consensus 213 l~~~~VDGILfDLG 226 (452)
...+|.|++++.
T Consensus 85 --~~~~d~v~~~~p 96 (194)
T TIGR00091 85 --DGSLSKVFLNFP 96 (194)
T ss_pred --CCceeEEEEECC
Confidence 136999998854
No 55
>PRK08317 hypothetical protein; Provisional
Probab=96.92 E-value=0.0053 Score=57.19 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=66.1
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
+.+.+++.+. ..++..++|...|.|..+..+.+.+++.++++|+|.++..++.++++.... ..++.++..++
T Consensus 7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~ 78 (241)
T PRK08317 7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEeccc
Confidence 4456677776 467889999999999999999988755568999999999999998873321 12566666666
Q ss_pred chHHHHHhhhcccccccCccEEEEccCCC
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
..+. + ....+|.|+.+..+.
T Consensus 79 ~~~~--~-------~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 79 DGLP--F-------PDGSFDAVRSDRVLQ 98 (241)
T ss_pred ccCC--C-------CCCCceEEEEechhh
Confidence 5432 1 123688888775543
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.91 E-value=0.0048 Score=57.91 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=71.4
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
+......+++..+. ..++..++|...|.|..+..+++.++...+++++|.++.+++.+++++...+. ..++.++
T Consensus 35 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~ 108 (239)
T PRK00216 35 LHRVWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFV 108 (239)
T ss_pred CcHHHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEE
Confidence 44566778888886 45778999999999999999999887446799999999999999988754321 1257777
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
..++.++. . ....+|.|++..+
T Consensus 109 ~~d~~~~~-----~----~~~~~D~I~~~~~ 130 (239)
T PRK00216 109 QGDAEALP-----F----PDNSFDAVTIAFG 130 (239)
T ss_pred ecccccCC-----C----CCCCccEEEEecc
Confidence 77776542 1 1236898876543
No 57
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.91 E-value=0.0041 Score=59.60 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=60.4
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
+.|+.+.+...+++..++|.-.|.|+.+..+++..+..++|+|+|+++. ... .+++++++++.
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~--------~~v~~i~~D~~ 101 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPI--------VGVDFLQGDFR 101 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCC--------CCcEEEecCCC
Confidence 4555555543357889999999999999999999877678999999981 111 24788899988
Q ss_pred hH---HHHHhhhcccccccCccEEEEccC
Q 012954 201 HI---KSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 201 ~i---~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
+. .+++.... ...+|.|+-|+.
T Consensus 102 ~~~~~~~i~~~~~----~~~~D~V~S~~~ 126 (209)
T PRK11188 102 DELVLKALLERVG----DSKVQVVMSDMA 126 (209)
T ss_pred ChHHHHHHHHHhC----CCCCCEEecCCC
Confidence 74 33333322 246888887753
No 58
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0027 Score=65.74 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=83.2
Q ss_pred CCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHhh
Q 012954 102 DYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 102 ~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
+|..|.+..|+...-+|+ ..|. ++||..++|++.+-||=|..|++...+ .+.|+|+|+|+.=+...+++++.
T Consensus 132 ~~~~G~~~vQd~sS~l~a------~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 132 EFAEGLIYVQDEASQLPA------LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred hhhceEEEEcCHHHHHHH------HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 777777777776665555 4555 679999999999999999999999876 44459999999999999999988
Q ss_pred hccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCcc
Q 012954 181 LLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM 230 (452)
Q Consensus 181 ~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~ 230 (452)
.+. .++.+++..-+.+....... ..+|-||+|==+|+.
T Consensus 205 lG~------~nv~~~~~d~~~~~~~~~~~------~~fD~iLlDaPCSg~ 242 (355)
T COG0144 205 LGV------RNVIVVNKDARRLAELLPGG------EKFDRILLDAPCSGT 242 (355)
T ss_pred cCC------CceEEEeccccccccccccc------CcCcEEEECCCCCCC
Confidence 865 25666666655544333211 249999999888863
No 59
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.86 E-value=0.0064 Score=64.12 Aligned_cols=95 Identities=17% Similarity=0.315 Sum_probs=73.3
Q ss_pred ccccchH--HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954 116 HIPVMLG--EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH 193 (452)
Q Consensus 116 H~PVLl~--Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~ 193 (452)
..+.+++ ++++.+.. ..+.++||.-+|.|.++..+....|+. .++|+|+++.+++.|.++....+. .++.
T Consensus 104 ~~~~~~d~~~~~~~~~~-~~~p~vLEIGcGsG~~ll~lA~~~P~~-~~iGIEI~~~~i~~a~~ka~~~gL------~NV~ 175 (390)
T PRK14121 104 KKPYILDIDNFLDFISK-NQEKILIEIGFGSGRHLLYQAKNNPNK-LFIGIEIHTPSIEQVLKQIELLNL------KNLL 175 (390)
T ss_pred cccccCCHHHHHHHhcC-CCCCeEEEEcCcccHHHHHHHHhCCCC-CEEEEECCHHHHHHHHHHHHHcCC------CcEE
Confidence 4444565 67888863 467799999999999999999999875 599999999999999888766543 3688
Q ss_pred EEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 194 TFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 194 li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+++++-..+...+. .+.+|.|.+.+
T Consensus 176 ~i~~DA~~ll~~~~-------~~s~D~I~lnF 200 (390)
T PRK14121 176 IINYDARLLLELLP-------SNSVEKIFVHF 200 (390)
T ss_pred EEECCHHHhhhhCC-------CCceeEEEEeC
Confidence 88888665544333 24699998764
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.84 E-value=0.0064 Score=55.64 Aligned_cols=86 Identities=8% Similarity=0.149 Sum_probs=66.1
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
++.+++.+. ..++..++|.=.|.|..+..+++. .++|+|+|+|+.+++.+++++... .+++++++++.
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~--------~~v~ii~~D~~ 69 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA--------DNLTVIHGDAL 69 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC--------CCEEEEECchh
Confidence 567788886 457889999999999999999987 246999999999999998877531 26888888886
Q ss_pred hHHHHHhhhcccccccCccEEEEccCC
Q 012954 201 HIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
++. +. ...+|.|+.|+=|
T Consensus 70 ~~~--~~-------~~~~d~vi~n~Py 87 (169)
T smart00650 70 KFD--LP-------KLQPYKVVGNLPY 87 (169)
T ss_pred cCC--cc-------ccCCCEEEECCCc
Confidence 542 11 1247888887655
No 61
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.82 E-value=0.0015 Score=64.27 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCchhhhhhcCCCC-ccccchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHh
Q 012954 102 DYDYESIIQQQQSS-HIPVMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN 179 (452)
Q Consensus 102 ~~~~~~~~~~~~~~-H~PVLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~ 179 (452)
-||.+-+++.+.-. -.|-=+.|.|...... .....+||+-+|.||.+..+..+.+ .||++|+||.=|+-|+++++
T Consensus 61 rfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNae 137 (263)
T KOG2730|consen 61 RFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAE 137 (263)
T ss_pred hhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccce
Confidence 35656555544332 2232333333322210 0235789999999999998887765 48999999999999999999
Q ss_pred hhccCCCCCCceEEEEccCcchHHHHHh
Q 012954 180 SLLHGQAHPHLKTHTFAKNFRHIKSVLG 207 (452)
Q Consensus 180 ~~~~~~~~~~~r~~li~~nF~~i~~~L~ 207 (452)
-||-. +|++|++++|-.+.+-|+
T Consensus 138 iYGI~-----~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 138 VYGVP-----DRITFICGDFLDLASKLK 160 (263)
T ss_pred eecCC-----ceeEEEechHHHHHHHHh
Confidence 99863 499999999987765554
No 62
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.75 E-value=0.009 Score=57.51 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI 202 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i 202 (452)
.++..++|.-.|.|..+..+++.++ +...++|+|.++.+++.|+++++.+.. ..+++++++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhC
Confidence 3678999999999999999998753 346799999999999999999877643 23678888887654
No 63
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.71 E-value=0.0067 Score=59.10 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCCEEEEEccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
.++..++|.-.|.|..+..+++.+ .+..+++|+|.++.+++.|+++++.++. ..+++++++++..+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~------- 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIA------- 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCC-------
Confidence 367899999999999998888753 2346799999999999999999877543 236788887765431
Q ss_pred ccccccCccEEEEccCC
Q 012954 211 ENILRSGVDAILMDLGM 227 (452)
Q Consensus 211 ~~l~~~~VDGILfDLGv 227 (452)
...+|.|++.+.+
T Consensus 123 ----~~~~D~vv~~~~l 135 (247)
T PRK15451 123 ----IENASMVVLNFTL 135 (247)
T ss_pred ----CCCCCEEehhhHH
Confidence 1247888876543
No 64
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.71 E-value=0.0077 Score=62.62 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=64.1
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
|++.+.+++. ..++..++|+-.|.|..+..++... ..|+|+|+|+.|++.|+++.+..+. .+++++++++
T Consensus 221 l~~~~~~~l~-~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~ 290 (374)
T TIGR02085 221 LYATARQWVR-EIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDS 290 (374)
T ss_pred HHHHHHHHHH-hcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCH
Confidence 5566666664 2356899999999999998888542 4699999999999999998876532 2688888887
Q ss_pred chHHHHHhhhcccccccCccEEEEc
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
.... ... ...+|.|++|
T Consensus 291 ~~~~---~~~-----~~~~D~vi~D 307 (374)
T TIGR02085 291 AKFA---TAQ-----MSAPELVLVN 307 (374)
T ss_pred HHHH---Hhc-----CCCCCEEEEC
Confidence 6542 211 1248999998
No 65
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.71 E-value=0.0067 Score=59.75 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|++++++.+....+...++|.-.|.|.=+..+++..+.. .++|+|+|+.|++.|+++++..+ .++++++
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~-~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D 141 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGI-ELHAADIDPAAVRCARRNLADAG---------GTVHEGD 141 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcC---------CEEEEee
Confidence 5888888877522233589999999999999999887763 69999999999999999876531 2456665
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+.+ .+... ....+|.|++|-=|.
T Consensus 142 ~~~---~l~~~----~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 142 LYD---ALPTA----LRGRVDILAANAPYV 164 (251)
T ss_pred chh---hcchh----cCCCEeEEEECCCCC
Confidence 432 11110 012588888886553
No 66
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.69 E-value=0.01 Score=56.97 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=64.2
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
+...++++|....++..++|+-.|.|.=+.+.|.... ..|+++|+|+.|++.+++.++..+. .++.+++++.
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~ 111 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNA 111 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchH
Confidence 3455677774324678999999999988877776642 4799999999999999998877643 2678888776
Q ss_pred chHHHHHhhhcccccccCccEEEEccC
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
.+ .+.... ..+|.|++|==
T Consensus 112 ~~---~l~~~~-----~~fDlV~~DPP 130 (199)
T PRK10909 112 LS---FLAQPG-----TPHNVVFVDPP 130 (199)
T ss_pred HH---HHhhcC-----CCceEEEECCC
Confidence 43 232211 24888886643
No 67
>PLN02244 tocopherol O-methyltransferase
Probab=96.59 E-value=0.012 Score=60.44 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=71.1
Q ss_pred chHHHHhhccCC----CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 120 MLGEVLDVFSSS----RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 120 Ll~Evl~~L~~~----~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
|++++++.+... .++..++|.-+|.|+.+..+.++++ ..|+|+|+++.+++.|+++.+..+. ..+++++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~ 173 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL-----SDKVSFQ 173 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEE
Confidence 788999988631 4678999999999999988888773 4699999999999999987765432 2367777
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~ 235 (452)
.++..++. + ..+.+|.|+... +.+++.+.
T Consensus 174 ~~D~~~~~--~-------~~~~FD~V~s~~--~~~h~~d~ 202 (340)
T PLN02244 174 VADALNQP--F-------EDGQFDLVWSME--SGEHMPDK 202 (340)
T ss_pred EcCcccCC--C-------CCCCccEEEECC--chhccCCH
Confidence 77765531 1 124689888743 33455444
No 68
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.57 E-value=0.011 Score=58.33 Aligned_cols=93 Identities=8% Similarity=0.097 Sum_probs=74.2
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.++-+-|=+++.+++.+. ..++..++|.-.|.|..|..+++.. ..|+|+|+|+.+++.+++++... .+
T Consensus 9 Qnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~--------~~ 76 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAA--------GN 76 (258)
T ss_pred ccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccC--------CC
Confidence 566677888999999986 4578999999999999999999872 46999999999999998876541 26
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
++++++++..++ . ..+|.|+.||=|
T Consensus 77 v~ii~~D~~~~~-----~------~~~d~Vv~NlPy 101 (258)
T PRK14896 77 VEIIEGDALKVD-----L------PEFNKVVSNLPY 101 (258)
T ss_pred EEEEEeccccCC-----c------hhceEEEEcCCc
Confidence 888888876542 1 136788888776
No 69
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.56 E-value=0.011 Score=45.95 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=57.2
Q ss_pred EEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccccc
Q 012954 137 FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRS 216 (452)
Q Consensus 137 yVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~ 216 (452)
++|...|.|+.+..+++ .+ ...++++|.++.++..+++...... ..+..+++.++.+... . ...
T Consensus 2 ildig~G~G~~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~-----~~~ 65 (107)
T cd02440 2 VLDLGCGTGALALALAS-GP-GARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPP---E-----ADE 65 (107)
T ss_pred eEEEcCCccHHHHHHhc-CC-CCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhcc---c-----cCC
Confidence 68999999999999987 33 3579999999999999885333221 2367788888776532 1 124
Q ss_pred CccEEEEccCCCcc
Q 012954 217 GVDAILMDLGMSSM 230 (452)
Q Consensus 217 ~VDGILfDLGvSS~ 230 (452)
++|.|+.+..+..+
T Consensus 66 ~~d~i~~~~~~~~~ 79 (107)
T cd02440 66 SFDVIISDPPLHHL 79 (107)
T ss_pred ceEEEEEccceeeh
Confidence 69999998887654
No 70
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.51 E-value=0.008 Score=59.70 Aligned_cols=93 Identities=8% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954 113 QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT 192 (452)
Q Consensus 113 ~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~ 192 (452)
++.+-+-+++.+++.+. ..++..++|.-.|.|..|..++++.+ +|+|+|+|+.+++.+++++.. .++
T Consensus 23 ~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---------~~v 89 (272)
T PRK00274 23 NFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---------DNL 89 (272)
T ss_pred CcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---------Cce
Confidence 45566678899999986 46888999999999999999998853 599999999999999876532 268
Q ss_pred EEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
+++++++..++ +.+. ..+.|+.|+-|
T Consensus 90 ~~i~~D~~~~~--~~~~-------~~~~vv~NlPY 115 (272)
T PRK00274 90 TIIEGDALKVD--LSEL-------QPLKVVANLPY 115 (272)
T ss_pred EEEEChhhcCC--HHHc-------CcceEEEeCCc
Confidence 88898887642 1110 14667777665
No 71
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.51 E-value=0.012 Score=56.91 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=64.1
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
.-...++++.+. ..++..++|.-.|.|..+..+.+.++. +.|+|+|.++.+++.|++++. ++.++.+
T Consensus 17 ~~~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~ 83 (258)
T PRK01683 17 TRPARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLP-----------DCQFVEA 83 (258)
T ss_pred hcHHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCC-----------CCeEEEC
Confidence 335778888886 457889999999999999988888866 479999999999999987642 3455566
Q ss_pred CcchHHHHHhhhcccccccCccEEEEccC
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
+...+ .. ...+|.|+.+..
T Consensus 84 d~~~~---~~-------~~~fD~v~~~~~ 102 (258)
T PRK01683 84 DIASW---QP-------PQALDLIFANAS 102 (258)
T ss_pred chhcc---CC-------CCCccEEEEccC
Confidence 55432 11 136888887753
No 72
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.012 Score=58.74 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=70.5
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
..-++..+. ..||..++|+=.|.|-=|..|+...++.|+|+.+|++++-.+.|+++|+.++. .+++++..++..
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~ 156 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVR 156 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccc
Confidence 444567776 57999999999999999999998888889999999999999999999999865 235666654443
Q ss_pred hHHHHHhhhcccccccCccEEEEccC
Q 012954 201 HIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
+ ... ...||+|++|+.
T Consensus 157 ~---~~~-------~~~vDav~LDmp 172 (256)
T COG2519 157 E---GID-------EEDVDAVFLDLP 172 (256)
T ss_pred c---ccc-------ccccCEEEEcCC
Confidence 2 222 236999999874
No 73
>PTZ00146 fibrillarin; Provisional
Probab=96.45 E-value=0.014 Score=59.39 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=56.7
Q ss_pred CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
.+++..++|+-.|.|+-|..+++..++.++|||+|.++.+++...+..+. ..++.++..+..+-..+-..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~-- 199 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRML-- 199 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhcc--
Confidence 46889999999999999999998888778999999998765433332211 12566777776542222111
Q ss_pred ccccccCccEEEEcc
Q 012954 211 ENILRSGVDAILMDL 225 (452)
Q Consensus 211 ~~l~~~~VDGILfDL 225 (452)
...||.|+.|.
T Consensus 200 ----~~~vDvV~~Dv 210 (293)
T PTZ00146 200 ----VPMVDVIFADV 210 (293)
T ss_pred ----cCCCCEEEEeC
Confidence 13699999998
No 74
>PRK11524 putative methyltransferase; Provisional
Probab=96.45 E-value=0.0069 Score=60.51 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.|..-.|| |+..+|..+. .+|++++|.-+|.| |+++... ++ .+.||||+|++.++.|++||+.
T Consensus 188 ~HPt~kP~~L~erlI~~~S--~~GD~VLDPF~GSG--TT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 188 NHPTQKPEALLKRIILASS--NPGDIVLDPFAGSF--TTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cCcccChHHHHHHHHHHhC--CCCCEEEECCCCCc--HHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 46667888 9999999996 58999999999999 6666554 43 4689999999999999999865
No 75
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.44 E-value=0.019 Score=55.75 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=67.3
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|++.+++.+. ..++..++|...|.|.-+..++...+. ..++|+|+++.+++.|++++. ... ..++.+++++
T Consensus 95 ~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~~~~~d 166 (275)
T PRK09328 95 ELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAK-HGL-----GARVEFLQGD 166 (275)
T ss_pred HHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH-hCC-----CCcEEEEEcc
Confidence 34555555554 346779999999999999999988876 479999999999999999876 111 2367788877
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+-.- +. ...+|.|+.|.-|.+
T Consensus 167 ~~~~---~~-------~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 167 WFEP---LP-------GGRFDLIVSNPPYIP 187 (275)
T ss_pred ccCc---CC-------CCceeEEEECCCcCC
Confidence 6211 11 136999999876654
No 76
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.44 E-value=0.018 Score=54.67 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred chHHHHhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 120 MLGEVLDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 120 Ll~Evl~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
+...+++.|.. ..++..++|.-+|.|..+..+++. + .+|+|+|+++++++.|++++..... ..++.+.+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d 112 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-G--AIVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVND 112 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECC
Confidence 44556667651 236789999999999989888764 2 3699999999999999998765422 1256666666
Q ss_pred cch
Q 012954 199 FRH 201 (452)
Q Consensus 199 F~~ 201 (452)
+.+
T Consensus 113 ~~~ 115 (219)
T TIGR02021 113 LLS 115 (219)
T ss_pred hhh
Confidence 554
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.42 E-value=0.017 Score=57.58 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=57.3
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|+..+++.+....+...++|...|.|.-+..++...++ .+++|+|+++.|++.|+++.+.++. ..++.+++++
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d 173 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSN 173 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECc
Confidence 367777776642223368999999999999999988876 4699999999999999998776543 1257777776
Q ss_pred c
Q 012954 199 F 199 (452)
Q Consensus 199 F 199 (452)
+
T Consensus 174 ~ 174 (284)
T TIGR00536 174 L 174 (284)
T ss_pred h
Confidence 5
No 78
>PLN02476 O-methyltransferase
Probab=96.41 E-value=0.025 Score=57.24 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=71.5
Q ss_pred cccchHHHHh---hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEE
Q 012954 117 IPVMLGEVLD---VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTH 193 (452)
Q Consensus 117 ~PVLl~Evl~---~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~ 193 (452)
.|++-.+..+ .|........+++.--|.|.=|..++..+++.++|+++|.|++..+.|++.++.++.. .+++
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~ 173 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVN 173 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEE
Confidence 3443444444 3332235689999999999777777777887789999999999999999999988752 4889
Q ss_pred EEccCcchH-HHHHhhhcccccccCccEEEEccC
Q 012954 194 TFAKNFRHI-KSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 194 li~~nF~~i-~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
++.+...+. .++..+ + ....+|.|++|--
T Consensus 174 li~GdA~e~L~~l~~~-~---~~~~FD~VFIDa~ 203 (278)
T PLN02476 174 VKHGLAAESLKSMIQN-G---EGSSYDFAFVDAD 203 (278)
T ss_pred EEEcCHHHHHHHHHhc-c---cCCCCCEEEECCC
Confidence 988876543 222211 1 0236999999953
No 79
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.014 Score=62.31 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=72.1
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.+..=..+|+..+++++. ..++..++|+.+|.|.-|..+..+ ..+|+|+++.++|++.|++..+..+. .+
T Consensus 273 ~N~~~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i------~N 342 (432)
T COG2265 273 VNPAVAEKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI------DN 342 (432)
T ss_pred cCHHHHHHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC------Cc
Confidence 344455679999999997 457789999999999999888854 35699999999999999998776543 35
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
++++.+.=..+.....+ ...+|.||+|
T Consensus 343 ~~f~~~~ae~~~~~~~~------~~~~d~VvvD 369 (432)
T COG2265 343 VEFIAGDAEEFTPAWWE------GYKPDVVVVD 369 (432)
T ss_pred EEEEeCCHHHHhhhccc------cCCCCEEEEC
Confidence 77776654443322211 1368999986
No 80
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.016 Score=55.95 Aligned_cols=84 Identities=27% Similarity=0.337 Sum_probs=57.9
Q ss_pred CCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~ 211 (452)
.|..++|+-+|.| ..+|-.. ++. .+|+|+|+|++|++.++++.++++ .++.++.++-+.+
T Consensus 45 ~g~~V~DlG~GTG--~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~-------g~v~f~~~dv~~~--------- 105 (198)
T COG2263 45 EGKTVLDLGAGTG--ILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL-------GDVEFVVADVSDF--------- 105 (198)
T ss_pred CCCEEEEcCCCcC--HHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC-------CceEEEEcchhhc---------
Confidence 6778999999999 4445444 454 479999999999999999887743 3677777766554
Q ss_pred cccccCccEEEEccCCCccCCCCCCCCc
Q 012954 212 NILRSGVDAILMDLGMSSMQVNNPERGF 239 (452)
Q Consensus 212 ~l~~~~VDGILfDLGvSS~QLDd~~RGF 239 (452)
...+|-+++|==+-+ |..-++|=|
T Consensus 106 ---~~~~dtvimNPPFG~-~~rhaDr~F 129 (198)
T COG2263 106 ---RGKFDTVIMNPPFGS-QRRHADRPF 129 (198)
T ss_pred ---CCccceEEECCCCcc-ccccCCHHH
Confidence 246888887732222 444444433
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.35 E-value=0.014 Score=62.29 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=63.9
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|++.+++.+. +++.++|...|.|-.+..++...+. ..++|+|+++.|++.|+++++..+ .++++++++
T Consensus 240 ~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gD 308 (423)
T PRK14966 240 HLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-------ARVEFAHGS 308 (423)
T ss_pred HHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcc
Confidence 35555665553 4579999999999999888887776 469999999999999999887653 267888887
Q ss_pred cchHHHHHhhhcccccccCccEEEEc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
+.+.. +.. ...+|.|+.|
T Consensus 309 l~e~~--l~~------~~~FDLIVSN 326 (423)
T PRK14966 309 WFDTD--MPS------EGKWDIIVSN 326 (423)
T ss_pred hhccc--ccc------CCCccEEEEC
Confidence 63311 111 1258888886
No 82
>PRK04266 fibrillarin; Provisional
Probab=96.35 E-value=0.027 Score=54.99 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=53.7
Q ss_pred ccchHHHHh---hccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954 118 PVMLGEVLD---VFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT 194 (452)
Q Consensus 118 PVLl~Evl~---~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l 194 (452)
+=+...++. .+. .+++..++|.-.|.|+-+..+.+..+ .++|||+|+++.+++...++.+.. .++.+
T Consensus 55 ~~~~~~ll~~~~~l~-i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~ 124 (226)
T PRK04266 55 SKLAAAILKGLKNFP-IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIP 124 (226)
T ss_pred cchHHHHHhhHhhCC-CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEE
Confidence 334444444 454 56889999999999999988888787 578999999999998766554332 25666
Q ss_pred EccCcch
Q 012954 195 FAKNFRH 201 (452)
Q Consensus 195 i~~nF~~ 201 (452)
++++..+
T Consensus 125 i~~D~~~ 131 (226)
T PRK04266 125 ILADARK 131 (226)
T ss_pred EECCCCC
Confidence 7666543
No 83
>PRK10742 putative methyltransferase; Provisional
Probab=96.34 E-value=0.023 Score=56.79 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=63.0
Q ss_pred HHhhccCCCCCC--EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC---ceEEEEccC
Q 012954 124 VLDVFSSSRTIT--SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH---LKTHTFAKN 198 (452)
Q Consensus 124 vl~~L~~~~~gg--iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~---~r~~li~~n 198 (452)
++++.- .+++. .++|||+|.|..+..+++. ++.|++++++|.+....++.|+....+.+... .|+++++++
T Consensus 78 l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 345554 34565 8999999999888777765 24599999999999988887776311111111 378888877
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
... +|.... ..+|.|.+|==|.-
T Consensus 154 a~~---~L~~~~-----~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLT---ALTDIT-----PRPQVVYLDPMFPH 176 (250)
T ss_pred HHH---HHhhCC-----CCCcEEEECCCCCC
Confidence 543 444332 25999999865543
No 84
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.34 E-value=0.016 Score=56.73 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
..++..++|.-.|.|.-+..++...+..++|+|+|+++.+++.|+++.+.++. .++.++++++..+. +
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~--~---- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALP--V---- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCC--C----
Confidence 35789999999999755655665566666899999999999999998776543 26777777765432 1
Q ss_pred ccccccCccEEEEcc
Q 012954 211 ENILRSGVDAILMDL 225 (452)
Q Consensus 211 ~~l~~~~VDGILfDL 225 (452)
....+|.|+.+.
T Consensus 143 ---~~~~fD~Vi~~~ 154 (272)
T PRK11873 143 ---ADNSVDVIISNC 154 (272)
T ss_pred ---CCCceeEEEEcC
Confidence 123689888774
No 85
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.015 Score=59.04 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
+|-=+.-+++.|. ..||.++|.+--|.|+=|.+|+....+.|+||.||.+..--+.|.+.++..+- ..++++.|
T Consensus 90 Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~h 163 (314)
T KOG2915|consen 90 YTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTH 163 (314)
T ss_pred ecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEE
Confidence 3333677889997 57999999999999999999999999999999999998877777766665543 23677766
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
.+-..---.++ ...+|+|.+||
T Consensus 164 rDVc~~GF~~k-------s~~aDaVFLDl 185 (314)
T KOG2915|consen 164 RDVCGSGFLIK-------SLKADAVFLDL 185 (314)
T ss_pred eecccCCcccc-------ccccceEEEcC
Confidence 55433211111 24689999987
No 86
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.25 E-value=0.039 Score=54.13 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=78.6
Q ss_pred hhcCCCCccccchHHHHhhcc---CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCC
Q 012954 109 IQQQQSSHIPVMLGEVLDVFS---SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQ 185 (452)
Q Consensus 109 ~~~~~~~H~PVLl~Evl~~L~---~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~ 185 (452)
+........|++..|...+|. .....+.++...-+.|-=+..|+..+|..++|+.+|+|++-.+.|++.++.++..
T Consensus 32 ~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~- 110 (219)
T COG4122 32 EEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD- 110 (219)
T ss_pred HHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-
Confidence 344555678888777766663 2346789999999999666666667886789999999999999999999998763
Q ss_pred CCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 186 AHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 186 ~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
.++.++.+ -+--+.+... ....+|.|++|=.=+.
T Consensus 111 ----~~i~~~~~--gdal~~l~~~----~~~~fDliFIDadK~~ 144 (219)
T COG4122 111 ----DRIELLLG--GDALDVLSRL----LDGSFDLVFIDADKAD 144 (219)
T ss_pred ----ceEEEEec--CcHHHHHHhc----cCCCccEEEEeCChhh
Confidence 46777775 2222333321 1247999999976543
No 87
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.24 E-value=0.023 Score=53.40 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=57.9
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
++..++|.-.|.|-.+..+....+. ++|+|+|.++.+++.+++.++..+. .++++++++..++ ..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~----~~---- 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDF----QH---- 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhc----cc----
Confidence 4789999999999777777655554 5799999999999999988876543 2688889887654 11
Q ss_pred ccccCccEEEEc
Q 012954 213 ILRSGVDAILMD 224 (452)
Q Consensus 213 l~~~~VDGILfD 224 (452)
...+|.|+.+
T Consensus 107 --~~~fD~I~s~ 116 (181)
T TIGR00138 107 --EEQFDVITSR 116 (181)
T ss_pred --cCCccEEEeh
Confidence 1369999886
No 88
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.24 E-value=0.019 Score=53.80 Aligned_cols=84 Identities=21% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEccCCChhHHHHHHhCCCCC--------EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 130 SSRTITSFVDCTLGAAGHSSAIIRAHPELK--------LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 130 ~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g--------~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
..+++.+++|-.+|.|.=-.+-+....+.. .++|+|+|+.+++.|+++++.++. ...+.+.+.+|.+
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDARE 99 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhh
Confidence 356889999999999943322111122221 389999999999999999988764 2367888888888
Q ss_pred HHHHHhhhcccccccCccEEEEccCC
Q 012954 202 IKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 202 i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
+. +. ...+|.|+.|.=|
T Consensus 100 l~--~~-------~~~~d~IvtnPPy 116 (179)
T PF01170_consen 100 LP--LP-------DGSVDAIVTNPPY 116 (179)
T ss_dssp GG--GT-------TSBSCEEEEE--S
T ss_pred cc--cc-------cCCCCEEEECcch
Confidence 75 11 2369999998755
No 89
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.20 E-value=0.02 Score=57.09 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=68.0
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
+-.|||-.-+.. ...+.++|...|+|.=+.++.++.++ .++.|+|+|+++.+.|++.++.... ..|++++
T Consensus 31 ~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~ 100 (248)
T COG4123 31 TDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVI 100 (248)
T ss_pred cHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEe
Confidence 344565443333 34789999999999888888888777 5799999999999999998765332 4589999
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
++++.++...... ..+|.|+.|
T Consensus 101 ~~Di~~~~~~~~~-------~~fD~Ii~N 122 (248)
T COG4123 101 EADIKEFLKALVF-------ASFDLIICN 122 (248)
T ss_pred hhhHHHhhhcccc-------cccCEEEeC
Confidence 9999887544331 247777754
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.13 E-value=0.042 Score=55.39 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV 205 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~ 205 (452)
++..+||.-.|.|-.|..||+.++....|+|+|+++++++.|.+++..... ..++..++++|.+...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccchhhh
Confidence 567999999999999999999986435699999999999999988865211 24677788888764333
No 91
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.09 E-value=0.039 Score=52.61 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=66.6
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
.|+-.+++...- ..++||.-+|.|.|..++....|+. .++|+|+....+..|.+++...+. .|+.+++
T Consensus 6 ~~~~~~~~f~~~-----~~l~lEIG~G~G~~l~~~A~~~Pd~-n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~ 73 (195)
T PF02390_consen 6 EPLDWQEIFGND-----NPLILEIGCGKGEFLIELAKRNPDI-NFIGIEIRKKRVAKALRKAEKRGL------KNVRFLR 73 (195)
T ss_dssp CTTCHHHHHTSC-----CEEEEEET-TTSHHHHHHHHHSTTS-EEEEEES-HHHHHHHHHHHHHHTT------SSEEEEE
T ss_pred CccCHHHHcCCC-----CCeEEEecCCCCHHHHHHHHHCCCC-CEEEEecchHHHHHHHHHHHhhcc------cceEEEE
Confidence 455566655543 2399999999999999999999986 589999999999999888877654 4899999
Q ss_pred cCcch-HHHHHhhhcccccccCccEEEEcc
Q 012954 197 KNFRH-IKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 197 ~nF~~-i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++-.. +..++. .+.+|.|.+.+
T Consensus 74 ~da~~~l~~~~~-------~~~v~~i~i~F 96 (195)
T PF02390_consen 74 GDARELLRRLFP-------PGSVDRIYINF 96 (195)
T ss_dssp S-CTTHHHHHST-------TTSEEEEEEES
T ss_pred ccHHHHHhhccc-------CCchheEEEeC
Confidence 88776 443433 24688887764
No 92
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.04 E-value=0.034 Score=52.49 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=43.2
Q ss_pred HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
++++.+.. .+++.++|.-.|.|.++..++++ ...|+|+|.++.+++.++++...
T Consensus 21 ~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 21 EVLEAVKV-VKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred HHHHhccc-CCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 44555553 36689999999999999888875 23699999999999999987654
No 93
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.02 E-value=0.018 Score=59.62 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=52.3
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
..|++.+++++. ..++ .++|+=.|.|..|..+.+.. .+|+|+|.+++|++.|++..+..+- .++++++.
T Consensus 183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~ 251 (352)
T PF05958_consen 183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRG 251 (352)
T ss_dssp HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-
T ss_pred HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEe
Confidence 459999999997 3344 79999999999999987764 4699999999999999988765432 36777765
Q ss_pred C
Q 012954 198 N 198 (452)
Q Consensus 198 n 198 (452)
+
T Consensus 252 ~ 252 (352)
T PF05958_consen 252 D 252 (352)
T ss_dssp -
T ss_pred e
Confidence 4
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.99 E-value=0.034 Score=55.72 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
|.-+.++.+. .++..++|.-.|.|..+.+++. .+. .+|+|+|+|+.|++.|++++...+. ..++.++..+.
T Consensus 148 l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~-~g~-~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~ 218 (288)
T TIGR00406 148 LCLEWLEDLD--LKDKNVIDVGCGSGILSIAALK-LGA-AKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYL 218 (288)
T ss_pred HHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHH-cCC-CeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccc
Confidence 5556666654 3788999999999988877664 444 4799999999999999998765432 12444444331
Q ss_pred chHHHHHhhhcccccccCccEEEEcc
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
. .. ....+|.|++|+
T Consensus 219 ~---~~--------~~~~fDlVvan~ 233 (288)
T TIGR00406 219 E---QP--------IEGKADVIVANI 233 (288)
T ss_pred c---cc--------cCCCceEEEEec
Confidence 1 11 123699999875
No 95
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.045 Score=53.38 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred cccCCccCCchhhhhhcC------CCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH
Q 012954 95 RRTRSNKDYDYESIIQQQ------QSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP 168 (452)
Q Consensus 95 ~r~~~~~~~~~~~~~~~~------~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~ 168 (452)
|--+-+..|..-+|.+.. ...=-|-|+--+++.|. ++++..+++.=.|.| +..|+|+++-. +|+++|+++
T Consensus 29 Re~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~-~~~g~~VLEIGtGsG-Y~aAvla~l~~--~V~siEr~~ 104 (209)
T COG2518 29 RELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE-LKPGDRVLEIGTGSG-YQAAVLARLVG--RVVSIERIE 104 (209)
T ss_pred HHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC-CCCCCeEEEECCCch-HHHHHHHHHhC--eEEEEEEcH
Confidence 333444444444443332 33356778999999998 679999999999999 77788888654 799999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCcc------CCCCCCCC
Q 012954 169 SALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSM------QVNNPERG 238 (452)
Q Consensus 169 ~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~------QLDd~~RG 238 (452)
+-.+.|+++|+..+. .++.+++++=+. =+.+ ...+|.|+..-++... ||....|-
T Consensus 105 ~L~~~A~~~L~~lg~------~nV~v~~gDG~~---G~~~------~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl 165 (209)
T COG2518 105 ELAEQARRNLETLGY------ENVTVRHGDGSK---GWPE------EAPYDRIIVTAAAPEVPEALLDQLKPGGRL 165 (209)
T ss_pred HHHHHHHHHHHHcCC------CceEEEECCccc---CCCC------CCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence 999999999998865 257777765331 1111 1369999999988875 77776653
No 96
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.94 E-value=0.04 Score=50.68 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=61.1
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
+||.+.+..+ +++.++|.-.|.|..+..+.+..+ +|+|+|.++++++.|+++++..+. ++++++++
T Consensus 9 ~~l~~~l~~~----~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d 74 (179)
T TIGR00537 9 LLLEANLREL----KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV-------GLDVVMTD 74 (179)
T ss_pred HHHHHHHHhc----CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEcc
Confidence 4555555544 346899999999999998887643 699999999999999998865422 46666666
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.... . ...+|.|+.|.-+
T Consensus 75 ~~~~---~--------~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 75 LFKG---V--------RGKFDVILFNPPY 92 (179)
T ss_pred cccc---c--------CCcccEEEECCCC
Confidence 4331 1 1268999988665
No 97
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.94 E-value=0.027 Score=54.77 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=67.1
Q ss_pred CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT 194 (452)
Q Consensus 115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l 194 (452)
.|.+-++..+++.+. ..++..++|.-.|.|.-+..+.+..|. ..|+|+|.++.+++.|+++ ++.+
T Consensus 12 ~~~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~-------------~~~~ 76 (255)
T PRK14103 12 DHRGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARER-------------GVDA 76 (255)
T ss_pred hHhhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhc-------------CCcE
Confidence 366667788999996 457889999999999888888887765 5799999999999998752 2334
Q ss_pred EccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954 195 FAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235 (452)
Q Consensus 195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~ 235 (452)
++++...+ .. ...+|.|+.+..+ +.+.++
T Consensus 77 ~~~d~~~~---~~-------~~~fD~v~~~~~l--~~~~d~ 105 (255)
T PRK14103 77 RTGDVRDW---KP-------KPDTDVVVSNAAL--QWVPEH 105 (255)
T ss_pred EEcChhhC---CC-------CCCceEEEEehhh--hhCCCH
Confidence 55554322 11 1358888886654 344444
No 98
>PRK04457 spermidine synthase; Provisional
Probab=95.85 E-value=0.059 Score=53.54 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
+...++|.=+|+|.-+..+++..|. .+++++|+|+++++.|++.+..... ..++++++++..+ ++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~---~l~~~--- 133 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAE---YIAVH--- 133 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHH---HHHhC---
Confidence 4568999999999888888888876 4699999999999999987643211 2478888887654 33332
Q ss_pred ccccCccEEEEcc
Q 012954 213 ILRSGVDAILMDL 225 (452)
Q Consensus 213 l~~~~VDGILfDL 225 (452)
...+|.|++|.
T Consensus 134 --~~~yD~I~~D~ 144 (262)
T PRK04457 134 --RHSTDVILVDG 144 (262)
T ss_pred --CCCCCEEEEeC
Confidence 13699999984
No 99
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.81 E-value=0.042 Score=53.03 Aligned_cols=98 Identities=11% Similarity=0.118 Sum_probs=68.5
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
.....+..|........++..--|.|-=+..|++.+|+.++|+.+|.|++-.+.|++.++..+. ..+++++.++-
T Consensus 32 ~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda 106 (205)
T PF01596_consen 32 ETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-H
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEecc
Confidence 3444455543222447999999999955566666688889999999999999999999988765 35899998876
Q ss_pred chH-HHHHhhhcccccccCccEEEEccC
Q 012954 200 RHI-KSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 200 ~~i-~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
.++ +++..+.. ...+|.|++|-.
T Consensus 107 ~~~l~~l~~~~~----~~~fD~VFiDa~ 130 (205)
T PF01596_consen 107 LEVLPELANDGE----EGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHHHHHTTT----TTSEEEEEEEST
T ss_pred HhhHHHHHhccC----CCceeEEEEccc
Confidence 553 33332211 236999999974
No 100
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.77 E-value=0.043 Score=50.96 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=56.8
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
+.|+.+-+....+++.++|...|.||-+..+++.+...++|+|+|+++.. .. .++.+++.++.
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~--------~~i~~~~~d~~ 82 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI--------ENVDFIRGDFT 82 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC--------CCceEEEeeCC
Confidence 45566655544688999999999999999999987655689999999853 11 13556666665
Q ss_pred hHH---HHHhhhcccccccCccEEEEcc
Q 012954 201 HIK---SVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 201 ~i~---~~L~~~~~~l~~~~VDGILfDL 225 (452)
+.. .+.... ...++|.|+.|.
T Consensus 83 ~~~~~~~l~~~~----~~~~~D~V~~~~ 106 (188)
T TIGR00438 83 DEEVLNKIRERV----GDDKVDVVMSDA 106 (188)
T ss_pred ChhHHHHHHHHh----CCCCccEEEcCC
Confidence 432 111111 123688888775
No 101
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.76 E-value=0.037 Score=54.17 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=63.3
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.++-.-|-+++++++.+. ..++..++|.=.|.|..|..|++..+ .|+|+|.|+.+++.+++++... .+
T Consensus 9 q~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~--------~~ 76 (253)
T TIGR00755 9 QNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLY--------ER 76 (253)
T ss_pred CccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcC--------Cc
Confidence 445556778999999996 45788999999999999999998864 3899999999999998766431 26
Q ss_pred EEEEccCcchH
Q 012954 192 THTFAKNFRHI 202 (452)
Q Consensus 192 ~~li~~nF~~i 202 (452)
++++++++.++
T Consensus 77 v~v~~~D~~~~ 87 (253)
T TIGR00755 77 LEVIEGDALKV 87 (253)
T ss_pred EEEEECchhcC
Confidence 78888877543
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=95.71 E-value=0.05 Score=55.54 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh-hccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS-LLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~-~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
+...++|.=.|.||-|..+|.+ +.+.++++|+|+|++|++.|++.+.. .+. ..+++|...|-.++. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~---~~-- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVT---ES-- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcc---cc--
Confidence 6688999999999998888875 44557899999999999999998743 322 246888777765431 11
Q ss_pred ccccccCccEEEEc
Q 012954 211 ENILRSGVDAILMD 224 (452)
Q Consensus 211 ~~l~~~~VDGILfD 224 (452)
...+|.|+.+
T Consensus 193 ----l~~FDlVF~~ 202 (296)
T PLN03075 193 ----LKEYDVVFLA 202 (296)
T ss_pred ----cCCcCEEEEe
Confidence 1369999988
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.67 E-value=0.051 Score=57.63 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=64.7
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
..++++.+. ..++..++|...|.|+++..+.+.. + ..|+|+|+++.+++.|+++.... ..++++++.++.
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~ 324 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-D-VHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCT 324 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcc
Confidence 455667665 4577899999999999998888766 3 46999999999999998765432 136777777765
Q ss_pred hHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954 201 HIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~ 235 (452)
.+. + ....+|.|+...- -+++.++
T Consensus 325 ~~~--~-------~~~~fD~I~s~~~--l~h~~d~ 348 (475)
T PLN02336 325 KKT--Y-------PDNSFDVIYSRDT--ILHIQDK 348 (475)
T ss_pred cCC--C-------CCCCEEEEEECCc--ccccCCH
Confidence 421 1 1235888876432 3444444
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.66 E-value=0.064 Score=58.26 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENI 213 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l 213 (452)
+..++|.-.|.|.-+..++..+|. .+|+|+|+++.|++.|+++++.++. ..++.++++++-. .+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~---~~~------ 203 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFE---NIE------ 203 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhh---hCc------
Confidence 468999999999999999988876 4799999999999999998876543 2368888877521 111
Q ss_pred cccCccEEEEccCCCcc
Q 012954 214 LRSGVDAILMDLGMSSM 230 (452)
Q Consensus 214 ~~~~VDGILfDLGvSS~ 230 (452)
...+|.|+.|.=|-..
T Consensus 204 -~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 204 -KQKFDFIVSNPPYISH 219 (506)
T ss_pred -CCCccEEEECCCCCCc
Confidence 1369999998876653
No 105
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=95.65 E-value=0.063 Score=53.33 Aligned_cols=103 Identities=11% Similarity=0.015 Sum_probs=68.8
Q ss_pred Cccccch--H---HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCC
Q 012954 115 SHIPVML--G---EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPH 189 (452)
Q Consensus 115 ~H~PVLl--~---Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~ 189 (452)
.+.|.|. . +.+..|........++..--+.|-=+..|...+++.++|+++|+|++..+.|++.++..+. .
T Consensus 56 ~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~ 130 (247)
T PLN02589 56 HPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----A 130 (247)
T ss_pred cCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----C
Confidence 3456653 2 3333333222446888888788855566666688788999999999999999999988764 3
Q ss_pred ceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
.++++++++..+.-.-+...+. ....+|.|++|
T Consensus 131 ~~I~~~~G~a~e~L~~l~~~~~--~~~~fD~iFiD 163 (247)
T PLN02589 131 HKIDFREGPALPVLDQMIEDGK--YHGTFDFIFVD 163 (247)
T ss_pred CceEEEeccHHHHHHHHHhccc--cCCcccEEEec
Confidence 5899999987654322221110 01369999998
No 106
>PRK06922 hypothetical protein; Provisional
Probab=95.63 E-value=0.036 Score=62.08 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
+++.++|.-+|.|..+..+.+.+|+ +.++|+|+++.+++.|++++...+ .++.+++++..++...+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fe----- 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFE----- 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccC-----
Confidence 5789999999999888888877876 579999999999999998765432 256777777655433232
Q ss_pred ccccCccEEEEcc
Q 012954 213 ILRSGVDAILMDL 225 (452)
Q Consensus 213 l~~~~VDGILfDL 225 (452)
...+|.|++..
T Consensus 485 --deSFDvVVsn~ 495 (677)
T PRK06922 485 --KESVDTIVYSS 495 (677)
T ss_pred --CCCEEEEEEch
Confidence 24699998653
No 107
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.60 E-value=0.082 Score=54.89 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=56.8
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.|++.+.+++. . .+..++|+-.|.|.-|.++.... .+|+|+|.++.|++.|+++++..+. .++++++++
T Consensus 194 ~l~~~v~~~~~-~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d 262 (362)
T PRK05031 194 KMLEWALDATK-G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHhh-c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECC
Confidence 48888888885 2 23579999999999999777654 3699999999999999998766532 268888887
Q ss_pred cch
Q 012954 199 FRH 201 (452)
Q Consensus 199 F~~ 201 (452)
...
T Consensus 263 ~~~ 265 (362)
T PRK05031 263 AEE 265 (362)
T ss_pred HHH
Confidence 654
No 108
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.60 E-value=0.087 Score=50.83 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
|=|..|=........++.+++|+-.|-|..|..+++.... ..|+|+|+.|.|++..++.++...- ..++..+++
T Consensus 86 ~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~ 159 (200)
T PF02475_consen 86 PRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVING 159 (200)
T ss_dssp GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES
T ss_pred cccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcC
Confidence 4455665555443468999999999999999999875433 5799999999999999887765433 346888888
Q ss_pred CcchHHHHHhhhcccccccCccEEEEccCCCccC
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQ 231 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~Q 231 (452)
....+.. . ..+|-|+|+|=-+|..
T Consensus 160 D~~~~~~---~-------~~~drvim~lp~~~~~ 183 (200)
T PF02475_consen 160 DAREFLP---E-------GKFDRVIMNLPESSLE 183 (200)
T ss_dssp -GGG------T-------T-EEEEEE--TSSGGG
T ss_pred CHHHhcC---c-------cccCEEEECChHHHHH
Confidence 8776643 1 3689999999766654
No 109
>PRK05785 hypothetical protein; Provisional
Probab=95.58 E-value=0.022 Score=55.15 Aligned_cols=158 Identities=9% Similarity=0.073 Sum_probs=100.9
Q ss_pred hHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 121 LGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 121 l~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
-+++++.+... .+++.++|.-.|.|-.+..+.+.. + +.|+|+|..+++++.|+++. ..+++++
T Consensus 38 r~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~ 101 (226)
T PRK05785 38 RAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVAD--------------DKVVGSF 101 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhcc--------------ceEEech
Confidence 34455544310 246899999999998888777766 2 57999999999999987631 1245555
Q ss_pred chHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCcccCC--CCC----CcccCCCCCCCCHHHHHhcCChHHHHH
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLG--DGP----LDMRMDPQASLKAEDILNSWPDAEVGR 273 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~--dgP----LDMRMD~~~~~tAadiLN~~se~eL~~ 273 (452)
.+++ +..+.+|.|+.-+|+ ++++|+++.++=.. =-| |++ ..........+++-|...-+-.
T Consensus 102 ~~lp---------~~d~sfD~v~~~~~l--~~~~d~~~~l~e~~RvLkp~~~ile~--~~p~~~~~~~~~~~y~~~~~P~ 168 (226)
T PRK05785 102 EALP---------FRDKSFDVVMSSFAL--HASDNIEKVIAEFTRVSRKQVGFIAM--GKPDNVIKRKYLSFYLRYIMPY 168 (226)
T ss_pred hhCC---------CCCCCEEEEEecChh--hccCCHHHHHHHHHHHhcCceEEEEe--CCCCcHHHHHHHHHHHHHHHHH
Confidence 4431 113479999998876 57888877765332 012 232 1112223455666677777777
Q ss_pred HHHHhCCCcchHH-HHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 012954 274 VLREYGEESNWHL-LQNKIVQARLRGGLHSTGELVDLIQSV 313 (452)
Q Consensus 274 Ifr~YGEE~~A~r-IA~aIv~~R~~~~i~TT~eLa~iI~~~ 313 (452)
|-+-++..+.+++ +...|- .+.+..+|.++++++
T Consensus 169 ~~~~~~~~~~~Y~yl~~si~------~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 169 IACLAGAKCRDYKYIYYIYE------RLPTNSFHREIFEKY 203 (226)
T ss_pred HHHHhcCChHHHHHHHHHHH------HCCCHHHHHHHHHHH
Confidence 7777777666653 455442 456788888888886
No 110
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.55 E-value=0.13 Score=55.73 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred CEEEEEccCCChhHHHHHHhCCC-------CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHh
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPE-------LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLG 207 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~-------~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~ 207 (452)
..++|-++|.|+=..++++.++. .-.++|+|+|+.|+..|+.+|..++. ....+.+.+|-.- ..+.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~-~~~~ 105 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSY-VLLN 105 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeecccccc-cccc
Confidence 47999999999999999987642 13589999999999999998876531 1233344443211 0100
Q ss_pred hhcccccccCccEEEEccCCCccCCCCCC
Q 012954 208 QIDENILRSGVDAILMDLGMSSMQVNNPE 236 (452)
Q Consensus 208 ~~~~~l~~~~VDGILfDLGvSS~QLDd~~ 236 (452)
... ...++|.|+.|==|..+|.+..+
T Consensus 106 ~~~---~~~~fD~IIgNPPy~~~k~~~~~ 131 (524)
T TIGR02987 106 IES---YLDLFDIVITNPPYGRLKPDKKE 131 (524)
T ss_pred ccc---ccCcccEEEeCCCccccCcchhh
Confidence 000 01246777766666665655444
No 111
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.50 E-value=0.023 Score=56.20 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=45.3
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCC---CCceEEEEccCcchHHHHHhhhcc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAH---PHLKTHTFAKNFRHIKSVLGQIDE 211 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~---~~~r~~li~~nF~~i~~~L~~~~~ 211 (452)
..++|||+|.|.+| .+|..++ ++|+++.++|-.-...+.-|+.+....+. -..|++++++++.+. |...
T Consensus 77 ~~VLDaTaGLG~Da-~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~-- 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDA-FVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQP-- 148 (234)
T ss_dssp --EEETT-TTSHHH-HHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCH--
T ss_pred CEEEECCCcchHHH-HHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---Hhhc--
Confidence 48999999999555 4555664 46999999998877766655554322110 013899999998764 3321
Q ss_pred cccccCccEEEEcc
Q 012954 212 NILRSGVDAILMDL 225 (452)
Q Consensus 212 ~l~~~~VDGILfDL 225 (452)
...+|.|-||=
T Consensus 149 ---~~s~DVVY~DP 159 (234)
T PF04445_consen 149 ---DNSFDVVYFDP 159 (234)
T ss_dssp ---SS--SEEEE--
T ss_pred ---CCCCCEEEECC
Confidence 24799999984
No 112
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.47 E-value=0.08 Score=54.83 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=59.9
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
....|++.+++++. . .++.++|.-.|.|.-|.++.+.. ..|+|+|.++.|++.|+++++..+. .+++++
T Consensus 182 ~~~~l~~~v~~~~~-~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~ 250 (353)
T TIGR02143 182 VNIKMLEWACEVTQ-G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQII 250 (353)
T ss_pred HHHHHHHHHHHHhh-c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEE
Confidence 45789999999986 2 23469999999999999776655 3699999999999999998866532 267888
Q ss_pred ccCcchH
Q 012954 196 AKNFRHI 202 (452)
Q Consensus 196 ~~nF~~i 202 (452)
.++..++
T Consensus 251 ~~d~~~~ 257 (353)
T TIGR02143 251 RMSAEEF 257 (353)
T ss_pred EcCHHHH
Confidence 8887553
No 113
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.44 E-value=0.079 Score=52.40 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=61.0
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
..++++.+. ..++..++|.-.|.|+-+..+.+..+ ..|+|+|.++.+++.|+++... ..++.+++.++.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcc
Confidence 577888886 46889999999999998888876653 4799999999999999987543 125777777664
Q ss_pred hHHHHHhhhcccccccCccEEEE
Q 012954 201 HIKSVLGQIDENILRSGVDAILM 223 (452)
Q Consensus 201 ~i~~~L~~~~~~l~~~~VDGILf 223 (452)
.+. +....+|.|+.
T Consensus 110 ~~~---------~~~~~FD~V~s 123 (263)
T PTZ00098 110 KKD---------FPENTFDMIYS 123 (263)
T ss_pred cCC---------CCCCCeEEEEE
Confidence 321 11235787776
No 114
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.39 E-value=0.11 Score=47.70 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred hHHHHhhccCCCC--CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHH
Q 012954 121 LGEVLDVFSSSRT--ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPS 169 (452)
Q Consensus 121 l~Evl~~L~~~~~--ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~ 169 (452)
|.|+.+.+....+ +..++|...+-||=|..++++....++|+|+|.-+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 5677777762234 489999999999999999998755578999999976
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.38 E-value=0.1 Score=49.37 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=63.4
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc-
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF- 199 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF- 199 (452)
..-+...|...-++..++|+-.|.|.=+.+.+++.. .+|+++|+|+.|++.+++.++..+. ..++++++.+.
T Consensus 37 rea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~ 109 (189)
T TIGR00095 37 RELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHH
Confidence 333445443222578999999999999998888743 3699999999999999998877643 23677777775
Q ss_pred chHHHHHhhhcccccccCccEEEEccCCC
Q 012954 200 RHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 200 ~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+.+...... ...+|.|++|==|.
T Consensus 110 ~~l~~~~~~------~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 110 RALKFLAKK------PTFDNVIYLDPPFF 132 (189)
T ss_pred HHHHHhhcc------CCCceEEEECcCCC
Confidence 333221110 11367777776554
No 116
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.31 E-value=0.083 Score=53.03 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=57.6
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
+++-+++.+. .+||..++|.-+|.||=+..+.++++ .+|.|+..+++-.+.+++++...+. .+++++...+|
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~ 121 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-G
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeec
Confidence 4777888886 57999999999999999999999983 4799999999999999999987654 34788888888
Q ss_pred chHH
Q 012954 200 RHIK 203 (452)
Q Consensus 200 ~~i~ 203 (452)
.++.
T Consensus 122 ~~~~ 125 (273)
T PF02353_consen 122 RDLP 125 (273)
T ss_dssp GG--
T ss_pred cccC
Confidence 7764
No 117
>PRK06202 hypothetical protein; Provisional
Probab=95.22 E-value=0.047 Score=52.30 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCCEEEEEccCCChhHHHHHHhC---CCCCEEEEEeCCHHHHHHHHHHHh
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAH---PELKLHIGVDVDPSALAKARAHLN 179 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~---p~~g~VigfDrD~~Ai~~Ak~rL~ 179 (452)
.++..++|.-.|.|+.+..|++.. +....|+|+|.++++++.|+++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 456799999999999998887643 223479999999999999987653
No 118
>PHA03411 putative methyltransferase; Provisional
Probab=95.16 E-value=0.053 Score=55.01 Aligned_cols=116 Identities=9% Similarity=0.110 Sum_probs=77.1
Q ss_pred cchhccccccCCccCCchhhhhhc------CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEE
Q 012954 88 MGLVKEKRRTRSNKDYDYESIIQQ------QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLH 161 (452)
Q Consensus 88 ~~~~~~~~r~~~~~~~~~~~~~~~------~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~V 161 (452)
.+-++.+.-|-..|+|=+..++-. .-++..+|+-..++ . ..+.+.++|...|.|.-+..++...+. .+|
T Consensus 17 ~l~~~~~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~---~-~~~~grVLDLGcGsGilsl~la~r~~~-~~V 91 (279)
T PHA03411 17 ELINSDRPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTI---D-AHCTGKVLDLCAGIGRLSFCMLHRCKP-EKI 91 (279)
T ss_pred HHHhCCcccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHh---c-cccCCeEEEcCCCCCHHHHHHHHhCCC-CEE
Confidence 344455555666777776655332 22334445434332 2 235679999999999999988887654 469
Q ss_pred EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 162 IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 162 igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+|+|+++.+++.|++++. ++.++++++..+. . ...+|.|+.|-=+-.
T Consensus 92 ~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~---~-------~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 92 VCVELNPEFARIGKRLLP-----------EAEWITSDVFEFE---S-------NEKFDVVISNPPFGK 138 (279)
T ss_pred EEEECCHHHHHHHHHhCc-----------CCEEEECchhhhc---c-------cCCCcEEEEcCCccc
Confidence 999999999999987531 4567788776432 1 136999999876644
No 119
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.15 E-value=0.11 Score=48.93 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=52.9
Q ss_pred chHHHHhhccC--CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 120 MLGEVLDVFSS--SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 120 Ll~Evl~~L~~--~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
+++.+++.|.. ..++..++|.-.|.|.-+..+++.. ..|+|+|.++.+++.|++++...+. ..++.++..
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~ 119 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGL-----AGNITFEVG 119 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEc
Confidence 34566666642 2367899999999999888888653 3499999999999999998765432 125666666
Q ss_pred Cc
Q 012954 198 NF 199 (452)
Q Consensus 198 nF 199 (452)
++
T Consensus 120 d~ 121 (230)
T PRK07580 120 DL 121 (230)
T ss_pred Cc
Confidence 64
No 120
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.12 E-value=0.13 Score=48.49 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=43.8
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
-.++++.+.. .+++.++|.-.|.|..+..+.+. + ..|+|+|+++.+++.++++.+.
T Consensus 19 ~~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~ 74 (195)
T TIGR00477 19 HSAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKAR 74 (195)
T ss_pred hHHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHH
Confidence 4466777763 45689999999999877777764 2 4699999999999998876543
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.12 E-value=0.096 Score=49.55 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=62.8
Q ss_pred cchHHH-HhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 119 VMLGEV-LDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 119 VLl~Ev-l~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
=.++|. .+.|... -++..++|+-.|.|.=...-|++- ...|+.+|+|+.|+...+++++..+. ..+++++.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~ 98 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIK 98 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEE
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCC-----Ccceeeec
Confidence 344554 4555421 268999999999999998888873 34699999999999999999988764 23577777
Q ss_pred cC-cchHHHHHhhhcccccccCccEEEEccCC
Q 012954 197 KN-FRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 197 ~n-F~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.+ +..+.+.... ...+|-|++|==|
T Consensus 99 ~d~~~~l~~~~~~------~~~fDiIflDPPY 124 (183)
T PF03602_consen 99 GDAFKFLLKLAKK------GEKFDIIFLDPPY 124 (183)
T ss_dssp SSHHHHHHHHHHC------TS-EEEEEE--ST
T ss_pred cCHHHHHHhhccc------CCCceEEEECCCc
Confidence 66 5555443221 2469999998433
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.10 E-value=0.14 Score=54.01 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
++..++|+-.|.||=+.+.+. +....|+++|+|+.|++.|++.++..+.+ ..++++++++..+ ++.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~---~l~~~~~- 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFK---LLRTYRD- 289 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHH---HHHHHHh-
Confidence 578999999999997765553 33457999999999999999988765421 1267888877433 2322110
Q ss_pred ccccCccEEEEcc
Q 012954 213 ILRSGVDAILMDL 225 (452)
Q Consensus 213 l~~~~VDGILfDL 225 (452)
....+|.|++|-
T Consensus 290 -~~~~fDlVilDP 301 (396)
T PRK15128 290 -RGEKFDVIVMDP 301 (396)
T ss_pred -cCCCCCEEEECC
Confidence 013699999763
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.05 E-value=0.07 Score=54.39 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=44.4
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
|.=|.|+.+. .++..++|.-.|.| -.+|... ++- ++|+|+|+||.|++.|+++.+..+
T Consensus 150 lcl~~l~~~~--~~g~~vLDvG~GSG--ILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~ 208 (295)
T PF06325_consen 150 LCLELLEKYV--KPGKRVLDVGCGSG--ILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG 208 (295)
T ss_dssp HHHHHHHHHS--STTSEEEEES-TTS--HHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc--cCCCEEEEeCCcHH--HHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC
Confidence 6666666664 47889999999999 5555555 554 579999999999999999876543
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.092 Score=52.84 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=60.4
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN- 198 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n- 198 (452)
|+..++..+. ..+. .++|...|.|==+.+++...+.. .|+|.|+.++|++.|+++.+.++. .++.+++.+
T Consensus 99 Lve~~l~~~~-~~~~-~ilDlGTGSG~iai~la~~~~~~-~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dl 169 (280)
T COG2890 99 LVEAALALLL-QLDK-RILDLGTGSGAIAIALAKEGPDA-EVIAVDISPDALALARENAERNGL------VRVLVVQSDL 169 (280)
T ss_pred HHHHHHHhhh-hcCC-cEEEecCChHHHHHHHHhhCcCC-eEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeec
Confidence 4555443343 2122 79999999998888888888874 699999999999999998877642 244444442
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
|+.+ ..++|.|++|==|
T Consensus 170 f~~~------------~~~fDlIVsNPPY 186 (280)
T COG2890 170 FEPL------------RGKFDLIVSNPPY 186 (280)
T ss_pred cccc------------CCceeEEEeCCCC
Confidence 4433 1368888887444
No 125
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.02 E-value=0.11 Score=51.98 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=58.0
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
..+.+++.+. ..++..++|.-.|.|.++..+++++|+. +++++|. |.+++.++++++..+. ..|++++.++|
T Consensus 137 ~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~ 208 (306)
T TIGR02716 137 AIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDI 208 (306)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCc
Confidence 3455666665 4577899999999999999999999875 6899998 7899999988877653 24788888776
Q ss_pred c
Q 012954 200 R 200 (452)
Q Consensus 200 ~ 200 (452)
.
T Consensus 209 ~ 209 (306)
T TIGR02716 209 Y 209 (306)
T ss_pred c
Confidence 4
No 126
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.94 E-value=0.053 Score=56.01 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=49.3
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
..||+++.+..+....++..++|..+|-||+...-... ..+.++|+|++.++|+.|++|.++.
T Consensus 46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 47888888887654447789999999999999988875 3467999999999999999998554
No 127
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.032 Score=52.27 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
.+..|+-+=.-++|+.--..-+|..+.|...|.|==| |.-..+....++|||+||+|++.+..+.++|.
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE 95 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFE 95 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhh
Confidence 5566887744455554322136789999999999433 33345666679999999999999998888773
No 128
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.78 E-value=0.15 Score=52.83 Aligned_cols=56 Identities=27% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
.++.|. ....+.++|.-.|.|..+..+++..|.. .|+++|+++.|++.|++.++..
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n 243 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAAN 243 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHc
Confidence 356664 2345789999999999999999888764 6999999999999999988764
No 129
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.76 E-value=0.1 Score=41.30 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=43.8
Q ss_pred EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccC
Q 012954 138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSG 217 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~ 217 (452)
+|.=.|.|-.+..+++. +. ..|+|+|.++++++.+++++... ++.+++.++.++. +....
T Consensus 1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~~---------~~~~~~~d~~~l~---------~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKNE---------GVSFRQGDAEDLP---------FPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTTS---------TEEEEESBTTSSS---------S-TT-
T ss_pred CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhccccc---------CchheeehHHhCc---------ccccc
Confidence 57778988555555554 44 57999999999999999977543 3446677776651 11246
Q ss_pred ccEEEEcc
Q 012954 218 VDAILMDL 225 (452)
Q Consensus 218 VDGILfDL 225 (452)
+|.|+..-
T Consensus 61 fD~v~~~~ 68 (95)
T PF08241_consen 61 FDVVFSNS 68 (95)
T ss_dssp EEEEEEES
T ss_pred cccccccc
Confidence 88886643
No 130
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.74 E-value=0.06 Score=49.76 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=41.6
Q ss_pred CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHH
Q 012954 112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
.|..-.|| |++.+|.... .+|++++|.-+|.| |+++... ++ .+.||+|++++..+.|++
T Consensus 171 ~h~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSG--TT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 171 KHPTQKPVELIERLIKAST--NPGDIVLDPFAGSG--TTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp --TT-S-HHHHHHHHHHHS---TT-EEEETT-TTT--HHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ceeecCCHHHHHHHHHhhh--ccceeeehhhhccC--hHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 35556777 8899999985 58999999999999 5555544 54 468999999999999874
No 131
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.094 Score=53.73 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=45.3
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.-.|.=|.++-+. +++..++|.=.|.| -.+|... ++- .+++|+|+||.|++.|+++...
T Consensus 148 TT~lcL~~Le~~~--~~g~~vlDvGcGSG--ILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 148 TTSLCLEALEKLL--KKGKTVLDVGCGSG--ILAIAAAKLGA-KKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred hHHHHHHHHHHhh--cCCCEEEEecCChh--HHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHH
Confidence 3357778888875 58999999999999 3444443 554 4699999999999999987654
No 132
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.56 E-value=0.12 Score=48.36 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=60.9
Q ss_pred chHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 120 MLGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 120 Ll~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
+..++++.+... .....++|.-.|.|..+..+++..+.. +++|+|.++.+++.+++++.. ++.++..
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~----------~~~~~~~ 87 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSE----------NVQFICG 87 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCC----------CCeEEec
Confidence 344455555421 234689999999999999999887764 599999999999999876531 4556666
Q ss_pred CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
++.++. + ....+|.|+.+..+
T Consensus 88 d~~~~~--~-------~~~~fD~vi~~~~l 108 (240)
T TIGR02072 88 DAEKLP--L-------EDSSFDLIVSNLAL 108 (240)
T ss_pred chhhCC--C-------CCCceeEEEEhhhh
Confidence 665431 0 12368998887543
No 133
>PRK00811 spermidine synthase; Provisional
Probab=94.28 E-value=0.26 Score=49.51 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
+...|.|.+.. + ....++|+=.|.|+-+..+|+. ++..+|.++|+|++.++.|++.+..+.... ....|
T Consensus 64 e~l~h~~~~~~--------~-~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~r 132 (283)
T PRK00811 64 EMMTHVPLFAH--------P-NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPR 132 (283)
T ss_pred HHhhhHHHhhC--------C-CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCc
Confidence 45556665532 2 3468899999999999999965 444579999999999999999886542110 01247
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++++.++-.. ++... ...+|.|+.|+
T Consensus 133 v~v~~~Da~~---~l~~~-----~~~yDvIi~D~ 158 (283)
T PRK00811 133 VELVIGDGIK---FVAET-----ENSFDVIIVDS 158 (283)
T ss_pred eEEEECchHH---HHhhC-----CCcccEEEECC
Confidence 8888777544 34332 24699999986
No 134
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.09 E-value=0.27 Score=48.43 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=63.3
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
.++|+.-||.|.|...+.++.|+.. ++|+++-...+..|.+++.+.+. .|+.+++.+=..+-+++...
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~----- 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPD----- 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCC-----
Confidence 5999999999999999999999975 89999999999999988887643 17888887766655554432
Q ss_pred ccCccEEEEcc
Q 012954 215 RSGVDAILMDL 225 (452)
Q Consensus 215 ~~~VDGILfDL 225 (452)
+.+|+|.+++
T Consensus 118 -~sl~~I~i~F 127 (227)
T COG0220 118 -GSLDKIYINF 127 (227)
T ss_pred -CCeeEEEEEC
Confidence 3699998875
No 135
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.08 E-value=0.24 Score=49.42 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.++++.+.. .+++.++|.=.|.|..+..+++. + ..|+|+|.++.|++.++++.+.
T Consensus 110 ~~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 110 SEVLEAVQT-VKPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHH
Confidence 345555532 24569999999999888888764 2 4799999999999999887654
No 136
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.07 E-value=0.35 Score=50.95 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK 203 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~ 203 (452)
.++.|. ...++.++|.-+|+|--+..+++..|. .+|+++|+++.|++.|++.++..... ...+++++.++.-
T Consensus 220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l--- 291 (378)
T PRK15001 220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNAL--- 291 (378)
T ss_pred HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEcccc---
Confidence 445554 234579999999999999888888876 47999999999999999988655321 0125666665531
Q ss_pred HHHhhhcccccccCccEEEEccCC
Q 012954 204 SVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 204 ~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
... ....+|.|+.|-=|
T Consensus 292 ---~~~----~~~~fDlIlsNPPf 308 (378)
T PRK15001 292 ---SGV----EPFRFNAVLCNPPF 308 (378)
T ss_pred ---ccC----CCCCEEEEEECcCc
Confidence 111 01258888887444
No 137
>PRK13699 putative methylase; Provisional
Probab=94.05 E-value=0.15 Score=49.74 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCCCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 112 QQSSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 112 ~~~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
.|..-.|| |+..+|+.+. .+|++++|.=+|.| |+++... ++ ...+|+|+|++-.+.|.+|++..
T Consensus 143 ~hp~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsg--tt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 143 HHPTEKPVTSLQPLIESFT--HPNAIVLDPFAGSG--STCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCC--HHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence 46667898 7777888886 58999999999999 5555544 43 45899999999999999998765
No 138
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.98 E-value=0.29 Score=51.42 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=46.1
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHh
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN 179 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~ 179 (452)
++.+++.+. .+++..++|.-+|.|+-+..+.+.++ .+|+|+|.++++++.|+++.+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc
Confidence 445667775 46889999999999999888887663 369999999999999998764
No 139
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=93.98 E-value=0.18 Score=47.10 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=40.8
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
++++.+.+. ++..++|.-+|.|.++..+.+..+. .++|+|.++++++.+++
T Consensus 4 ~~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 4 LESILNLIP---PGSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHH
Confidence 567777774 5679999999999998888765432 47999999999988864
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=93.80 E-value=0.25 Score=51.38 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=62.8
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
...|.+++++.+....++..++|...|.|.-+..+++.++. ..++++|.++.+++.|+++... .++.+++
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~ 166 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL---------KECKIIE 166 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhc---------cCCeEEe
Confidence 44566777776643346789999999999888888887765 4699999999999999886431 1455566
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++..++. +....+|.|+...
T Consensus 167 gD~e~lp---------~~~~sFDvVIs~~ 186 (340)
T PLN02490 167 GDAEDLP---------FPTDYADRYVSAG 186 (340)
T ss_pred ccHHhCC---------CCCCceeEEEEcC
Confidence 6654331 0123588887743
No 141
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.77 E-value=0.32 Score=50.11 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
++..++|.-+|+|..+..+.+ . ...|+|+|.++++++.|+++...... ..++++++++..++.. .
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~--g~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~---~---- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-M--GATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLAD---E---- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-c--CCEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhh---c----
Confidence 567899999999998887764 2 24799999999999999876543211 1267788888765531 1
Q ss_pred ccccCccEEEEccCCCccCCCCC
Q 012954 213 ILRSGVDAILMDLGMSSMQVNNP 235 (452)
Q Consensus 213 l~~~~VDGILfDLGvSS~QLDd~ 235 (452)
...+|.|+.-- ..+++.++
T Consensus 196 --~~~FD~Vi~~~--vLeHv~d~ 214 (322)
T PLN02396 196 --GRKFDAVLSLE--VIEHVANP 214 (322)
T ss_pred --cCCCCEEEEhh--HHHhcCCH
Confidence 13689888733 34566664
No 142
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.71 E-value=0.19 Score=48.12 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=43.0
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
++.+++..+ .++..++|.-+|.|..+..+.+.++. ..++|+|+++++++.|++++
T Consensus 33 ~~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 33 MFARALNRL---PKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred HHHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC
Confidence 344445444 25678999999999888888877765 46999999999999998753
No 143
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.69 E-value=0.37 Score=47.86 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=56.1
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhccc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDEN 212 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~~ 212 (452)
....||.=.=.|--+.+....+|+.|+|++||+|+++.+.+.+..+..+- ..+++++++. -..|+++++..+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i~g~a~esLd~l~~~~~-- 146 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFIEGPALESLDELLADGE-- 146 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeeeecchhhhHHHHHhcCC--
Confidence 35677765545644555666699999999999999999999776665443 3477777755 456666666532
Q ss_pred ccccCccEEEEc
Q 012954 213 ILRSGVDAILMD 224 (452)
Q Consensus 213 l~~~~VDGILfD 224 (452)
...+|.+++|
T Consensus 147 --~~tfDfaFvD 156 (237)
T KOG1663|consen 147 --SGTFDFAFVD 156 (237)
T ss_pred --CCceeEEEEc
Confidence 3457777666
No 144
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.65 E-value=0.34 Score=46.63 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.||++++... +.+.++|.-.|.|.+|..+.++ + -.|.|+|+++.|++.+++..+.
T Consensus 20 s~v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~-G--~~VtAvD~s~~al~~l~~~a~~ 74 (192)
T PF03848_consen 20 SEVLEAVPLL-KPGKALDLGCGEGRNALYLASQ-G--FDVTAVDISPVALEKLQRLAEE 74 (192)
T ss_dssp HHHHHHCTTS--SSEEEEES-TTSHHHHHHHHT-T---EEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc-CCCcEEEcCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHhh
Confidence 4555555533 5689999999999999999876 2 2499999999999988765443
No 145
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=93.57 E-value=0.35 Score=49.48 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
+.++..|.+ ..++.++|.-+|.|.|+..+++..+. .|+|+|.++..+..++..-..... ..+++++..++.+
T Consensus 112 ~~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHH
Confidence 345556653 47889999999999999999987443 599999999888765432111111 1267777777765
Q ss_pred HHHHHhhhcccccccCccEEEE
Q 012954 202 IKSVLGQIDENILRSGVDAILM 223 (452)
Q Consensus 202 i~~~L~~~~~~l~~~~VDGILf 223 (452)
+.. ...+|.|+.
T Consensus 184 lp~----------~~~FD~V~s 195 (322)
T PRK15068 184 LPA----------LKAFDTVFS 195 (322)
T ss_pred CCC----------cCCcCEEEE
Confidence 521 135888774
No 146
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.54 E-value=0.22 Score=48.13 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=42.9
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
+.+.+++.|. ..+.+.++|.-+|.|..+..+.+. ...|+|+|+++.+++.|+++.
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC
Confidence 4566677775 346789999999999877776653 246999999999999998764
No 147
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.50 E-value=0.35 Score=50.89 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=61.1
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
-.++|+-.|.|-=+..++.+.++...|++.|++++|++.++++++.... .++++++.+...+ +...+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~---l~~~~---- 112 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANV---LRYRN---- 112 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHH---HHHhC----
Confidence 4899999999999999998865556799999999999999998876532 2567777766544 33221
Q ss_pred ccCccEEEEccCCCc
Q 012954 215 RSGVDAILMDLGMSS 229 (452)
Q Consensus 215 ~~~VDGILfDLGvSS 229 (452)
..+|.|.+|= +-|
T Consensus 113 -~~fDvIdlDP-fGs 125 (374)
T TIGR00308 113 -RKFHVIDIDP-FGT 125 (374)
T ss_pred -CCCCEEEeCC-CCC
Confidence 3599999996 544
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=93.41 E-value=0.51 Score=44.91 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=61.4
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
|+.++-+.+.+. ..++..++|.-.|.|..+..+++. . ..++++|.++.+++.|++++...+. ++.++..
T Consensus 34 ~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~ 102 (233)
T PRK05134 34 PLRLNYIREHAG-GLFGKRVLDVGCGGGILSESMARL-G--ADVTGIDASEENIEVARLHALESGL-------KIDYRQT 102 (233)
T ss_pred HHHHHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEec
Confidence 444555555554 346789999999999988877764 2 3599999999999999987765322 4556666
Q ss_pred CcchHHHHHhhhcccccccCccEEEEcc
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++..+. ... ...+|.|++..
T Consensus 103 ~~~~~~---~~~-----~~~fD~Ii~~~ 122 (233)
T PRK05134 103 TAEELA---AEH-----PGQFDVVTCME 122 (233)
T ss_pred CHHHhh---hhc-----CCCccEEEEhh
Confidence 665442 111 13699998754
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=93.20 E-value=0.48 Score=49.90 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
++..++|+-.|.|.=+..++...+. ..|+++|+|+.|++.++++++..+. .+.++++++...+ +.. .
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~---l~~-~-- 123 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANAL---LHE-E-- 123 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHH---Hhh-c--
Confidence 3468999999999999988877653 4699999999999999998865432 1345666665432 321 1
Q ss_pred ccccCccEEEEc-cCCCc
Q 012954 213 ILRSGVDAILMD-LGMSS 229 (452)
Q Consensus 213 l~~~~VDGILfD-LGvSS 229 (452)
..+|.|++| .|...
T Consensus 124 ---~~fD~V~lDP~Gs~~ 138 (382)
T PRK04338 124 ---RKFDVVDIDPFGSPA 138 (382)
T ss_pred ---CCCCEEEECCCCCcH
Confidence 259999999 55543
No 150
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.19 E-value=0.43 Score=51.92 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=70.0
Q ss_pred CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT 194 (452)
Q Consensus 115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l 194 (452)
.|.|.++=..-..+. ..+.++||.-+|.|+|...+....|+.. ++|+|+....+..+..+....+. .++.+
T Consensus 331 ~~~p~~~i~~eklf~--~~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l------~N~~~ 401 (506)
T PRK01544 331 NELPKYLFSKEKLVN--EKRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNI------TNFLL 401 (506)
T ss_pred hhhhhhCCCHHHhCC--CCCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCC------CeEEE
Confidence 467776644433332 3567999999999999999999999964 89999999999888776655432 37778
Q ss_pred EccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 195 FAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 195 i~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
+..+...+..++. ...+|.|.+.+
T Consensus 402 ~~~~~~~~~~~~~-------~~sv~~i~i~F 425 (506)
T PRK01544 402 FPNNLDLILNDLP-------NNSLDGIYILF 425 (506)
T ss_pred EcCCHHHHHHhcC-------cccccEEEEEC
Confidence 8877666655543 23688888765
No 151
>PHA03412 putative methyltransferase; Provisional
Probab=93.07 E-value=0.23 Score=49.48 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=58.4
Q ss_pred cccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceE
Q 012954 116 HIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHP--ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKT 192 (452)
Q Consensus 116 H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p--~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~ 192 (452)
.+|. |...++... ..++.++|...|.|.=+.+++++.+ ....|+|+|+|+.|++.|++.+. ++
T Consensus 34 fTP~~iAr~~~i~~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~ 99 (241)
T PHA03412 34 FTPIGLARDFTIDA---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EA 99 (241)
T ss_pred CCCHHHHHHHHHhc---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CC
Confidence 5555 334443222 2468999999999988888887643 23479999999999999987542 35
Q ss_pred EEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 193 HTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 193 ~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.++++++.... . ...+|.||.|==|
T Consensus 100 ~~~~~D~~~~~-----~-----~~~FDlIIsNPPY 124 (241)
T PHA03412 100 TWINADALTTE-----F-----DTLFDMAISNPPF 124 (241)
T ss_pred EEEEcchhccc-----c-----cCCccEEEECCCC
Confidence 56676665321 0 1257888776443
No 152
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=92.99 E-value=0.52 Score=48.47 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=42.6
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak 175 (452)
+..+.++..+. ..+++.++|..+|.|.|+..++...+ ..|+|+|..+..+..++
T Consensus 108 ~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 108 IKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFE 161 (314)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHH
Confidence 34556777775 35789999999999999999887643 36999999999887653
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.92 E-value=0.45 Score=53.73 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=59.3
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
.+..++|+-.|.|+=|..++.. + ...|+++|+++.|++.|+++++..+.+ ..++++++++.-+ ++...+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~---~l~~~~-- 606 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLA---WLKEAR-- 606 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHH---HHHHcC--
Confidence 4789999999999999998874 3 246999999999999999988765431 1368888877432 333222
Q ss_pred ccccCccEEEEcc
Q 012954 213 ILRSGVDAILMDL 225 (452)
Q Consensus 213 l~~~~VDGILfDL 225 (452)
..+|.|++|-
T Consensus 607 ---~~fDlIilDP 616 (702)
T PRK11783 607 ---EQFDLIFIDP 616 (702)
T ss_pred ---CCcCEEEECC
Confidence 3699999993
No 154
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=92.85 E-value=0.54 Score=48.33 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=47.4
Q ss_pred cchHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 119 VMLGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 119 VLl~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
.+++.+++++... .++..++|.-.|.|.-+..+++. ...|+|+|+.+.+++.|+++....
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc
Confidence 4567788887521 25679999999999888888864 246999999999999999987653
No 155
>PRK03612 spermidine synthase; Provisional
Probab=92.69 E-value=0.6 Score=50.92 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=58.2
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH--HHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA--HLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~--rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
+.+.++|.=.|.|+-+..+++ ++...++.++|+|+++++.|++ .+...... .....|+++++++..+ ++...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-~~~dprv~vi~~Da~~---~l~~~- 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGG-ALDDPRVTVVNDDAFN---WLRKL- 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-ccCCCceEEEEChHHH---HHHhC-
Confidence 456899999999999999996 5554579999999999999998 34332110 0012478888776543 34332
Q ss_pred ccccccCccEEEEcc
Q 012954 211 ENILRSGVDAILMDL 225 (452)
Q Consensus 211 ~~l~~~~VDGILfDL 225 (452)
...+|.|+.|+
T Consensus 371 ----~~~fDvIi~D~ 381 (521)
T PRK03612 371 ----AEKFDVIIVDL 381 (521)
T ss_pred ----CCCCCEEEEeC
Confidence 24799999994
No 156
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.69 E-value=0.68 Score=47.23 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=59.9
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
++++++-|. .+||..++|.=+|.||=+....++++ .+|+|++..++..+.+++++...+.. .++++...++.
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r 132 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR 132 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc
Confidence 667788887 68999999999999999999998884 46999999999999999998876652 25666555554
Q ss_pred hH
Q 012954 201 HI 202 (452)
Q Consensus 201 ~i 202 (452)
.+
T Consensus 133 d~ 134 (283)
T COG2230 133 DF 134 (283)
T ss_pred cc
Confidence 44
No 157
>PLN02366 spermidine synthase
Probab=92.56 E-value=0.7 Score=47.34 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
+...|.|.+. . + +...++|.=.|.|+=...+++ +++..+|..+|+|+..++.|++.+...... ....|
T Consensus 79 e~l~h~~l~~-------~-~-~pkrVLiIGgG~G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpR 146 (308)
T PLN02366 79 EMITHLPLCS-------I-P-NPKKVLVVGGGDGGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPR 146 (308)
T ss_pred HHHHHHHHhh-------C-C-CCCeEEEEcCCccHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCc
Confidence 4555666542 2 2 346789999999988888885 466567999999999999999987543210 01248
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++++.++-.. ++.+.. ...+|.|+.|+
T Consensus 147 v~vi~~Da~~---~l~~~~----~~~yDvIi~D~ 173 (308)
T PLN02366 147 VNLHIGDGVE---FLKNAP----EGTYDAIIVDS 173 (308)
T ss_pred eEEEEChHHH---HHhhcc----CCCCCEEEEcC
Confidence 8888776433 333321 13699999986
No 158
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=92.46 E-value=0.63 Score=48.61 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=78.1
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFA 196 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~ 196 (452)
-|=|..|=...+....+|.+++|+=.|-|.-|..++..-.. . |+|+|+.|.|++..++.++-..- ..++..++
T Consensus 172 sprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~ 244 (341)
T COG2520 172 SPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKV-----EGRVEPIL 244 (341)
T ss_pred CCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCc-----cceeeEEe
Confidence 45577776666654567999999999999999998866333 3 99999999999999998765433 23577888
Q ss_pred cCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCC
Q 012954 197 KNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNP 235 (452)
Q Consensus 197 ~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~ 235 (452)
+.-.++...+ ..+|-|+|.+=.|++|+...
T Consensus 245 gD~rev~~~~---------~~aDrIim~~p~~a~~fl~~ 274 (341)
T COG2520 245 GDAREVAPEL---------GVADRIIMGLPKSAHEFLPL 274 (341)
T ss_pred ccHHHhhhcc---------ccCCEEEeCCCCcchhhHHH
Confidence 8776653222 36999999999988887654
No 159
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=92.06 E-value=0.67 Score=43.75 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=46.3
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCc
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNF 199 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF 199 (452)
.++|.-.|.|+.+..+++.++. ..++|+|.++++++.|++++...+. ..+++++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEeccc
Confidence 5799999999999999988866 4699999999999999998866433 23566666554
No 160
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.02 E-value=0.54 Score=41.05 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=38.3
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
+++|+-.|.|-+|..+++..+. +++++||-||.+++.+++.++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHc
Confidence 4899999999998888877655 47999999999999998877654
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.98 E-value=1.4 Score=43.76 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=55.5
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
..++|.-.|.|+=+..+|+..+. ..+.++|+|+++++.|++.+...... ....+++++.++.. +++...
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~i~~~D~~---~~l~~~----- 142 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVDLQIDDGF---KFLADT----- 142 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceEEEECchH---HHHHhC-----
Confidence 48899999999988888876533 56999999999999999877543210 01236777664432 334332
Q ss_pred ccCccEEEEcc
Q 012954 215 RSGVDAILMDL 225 (452)
Q Consensus 215 ~~~VDGILfDL 225 (452)
...+|.|+.|.
T Consensus 143 ~~~yDvIi~D~ 153 (270)
T TIGR00417 143 ENTFDVIIVDS 153 (270)
T ss_pred CCCccEEEEeC
Confidence 13699999884
No 162
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.91 E-value=0.42 Score=51.20 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=81.4
Q ss_pred cCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 101 KDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 101 ~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
-+|-++-|+.|....-.||| .|. ++||..++|++.--||-|++|.+-..+.|.|||.|.-..-+..-++.+..
T Consensus 216 ~e~lag~~~LQ~~sS~Lpv~------aL~-Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r 288 (460)
T KOG1122|consen 216 PEYLAGHYMLQNASSFLPVM------ALD-PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR 288 (460)
T ss_pred hhhcccceeeccCcccceee------ecC-CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence 46788889999999999998 465 68999999999999999999999999999999999998888887777777
Q ss_pred hccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 181 LLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 181 ~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
.+-+ +. +..|+.... +.+ + .....+|-||+|==+|-
T Consensus 289 lGv~------nt--iv~n~D~~e--f~~-~--~~~~~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 289 LGVT------NT--IVSNYDGRE--FPE-K--EFPGSFDRVLLDAPCSG 324 (460)
T ss_pred hCCC------ce--EEEccCccc--ccc-c--ccCcccceeeecCCCCC
Confidence 6532 22 334444320 100 0 01125888888876664
No 163
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.85 E-value=0.5 Score=50.17 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
..+++.+. ..+++.++|.-+|.|.++..+.+.. .+|+|+|.++.+++.+++
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~ 77 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES 77 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH
Confidence 34556665 3467899999999999999988763 469999999999998765
No 164
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.70 E-value=0.25 Score=48.95 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCcccc-----chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-C-CCCCEEEEEeCCHHHHHHHHHHHh
Q 012954 114 SSHIPV-----MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-H-PELKLHIGVDVDPSALAKARAHLN 179 (452)
Q Consensus 114 ~~H~PV-----Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~-p~~g~VigfDrD~~Ai~~Ak~rL~ 179 (452)
+.-.|| +.+.++++|. ....-..-|+++|+| |-.-+|-- + .....|||-|+|++|++.|+++|.
T Consensus 28 ~p~FPVRLAsEi~qR~l~~l~-~~~p~tLyDPCCG~g-yLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 28 FPAFPVRLASEIFQRALHYLE-GKGPYTLYDPCCGSG-YLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp B----HHHHHHHHHHHHCTSS-S-S-EEEEETT-TTS-HHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhc-CCCCeeeeccCCCcc-HHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 446788 4455566664 223346789999998 66666554 2 235569999999999999998763
No 165
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.57 E-value=0.51 Score=46.63 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
.++-+-|-+++.+++.+. ..++..+||.=-|.|--|.+|++.. .+|+++++|+...+.-++++.. ..+
T Consensus 10 QnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~~~ 77 (262)
T PF00398_consen 10 QNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------NPN 77 (262)
T ss_dssp SSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------CSS
T ss_pred cCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------ccc
Confidence 566677889999999997 4588999999999999999999986 5799999999988877765542 238
Q ss_pred EEEEccCcchHH
Q 012954 192 THTFAKNFRHIK 203 (452)
Q Consensus 192 ~~li~~nF~~i~ 203 (452)
+++++++|-.++
T Consensus 78 ~~vi~~D~l~~~ 89 (262)
T PF00398_consen 78 VEVINGDFLKWD 89 (262)
T ss_dssp EEEEES-TTTSC
T ss_pred ceeeecchhccc
Confidence 999999987643
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=91.44 E-value=1.1 Score=46.41 Aligned_cols=84 Identities=21% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-ccCCCCCCceEEEEc-cCcchHHHHHhhhc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-LHGQAHPHLKTHTFA-KNFRHIKSVLGQID 210 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-~~~~~~~~~r~~li~-~nF~~i~~~L~~~~ 210 (452)
++..++|.-.|.|+=...+..+.+. ..++|+|+|+.|++.|++.++.. .. ..++.+++ .+-.++..-+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~- 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHK- 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhccccc-
Confidence 4578999999988666666666665 46999999999999999988765 22 23666643 3323322211100
Q ss_pred ccccccCccEEEEccCC
Q 012954 211 ENILRSGVDAILMDLGM 227 (452)
Q Consensus 211 ~~l~~~~VDGILfDLGv 227 (452)
...+|.||.|==|
T Consensus 187 ----~~~fDlivcNPPf 199 (321)
T PRK11727 187 ----NERFDATLCNPPF 199 (321)
T ss_pred ----CCceEEEEeCCCC
Confidence 1357777766444
No 167
>PRK01581 speE spermidine synthase; Validated
Probab=91.12 E-value=1 Score=47.54 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH--HHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA--HLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~--rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~ 211 (452)
...+++.=.|.|+-...+|+ +++..+|.++|+|+++++.|++ .|..+... .....|++++.++-.. ++...
T Consensus 151 PkrVLIIGgGdG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~-~~~DpRV~vvi~Da~~---fL~~~-- 223 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKS-AFFDNRVNVHVCDAKE---FLSSP-- 223 (374)
T ss_pred CCEEEEECCCHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccc-cCCCCceEEEECcHHH---HHHhc--
Confidence 35788888898988888886 4555679999999999999996 23221110 0012478887765443 34432
Q ss_pred cccccCccEEEEcc
Q 012954 212 NILRSGVDAILMDL 225 (452)
Q Consensus 212 ~l~~~~VDGILfDL 225 (452)
...+|.|++|+
T Consensus 224 ---~~~YDVIIvDl 234 (374)
T PRK01581 224 ---SSLYDVIIIDF 234 (374)
T ss_pred ---CCCccEEEEcC
Confidence 23699999994
No 168
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.08 E-value=0.61 Score=45.88 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=41.7
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAK 173 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~ 173 (452)
|.++++.+....++.+++|...|.||.|..+++. + .++|+|+|..+..+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence 6778888763346789999999999999999986 3 3579999999987754
No 169
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=90.78 E-value=0.63 Score=45.93 Aligned_cols=94 Identities=19% Similarity=0.320 Sum_probs=58.8
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
+...|.|.++.. +|..+.|= =.|.||-...+++. ++...+..+|+|+..++.|++.+...... ....|
T Consensus 64 e~l~h~~~~~~~--------~p~~VLii-GgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r 131 (246)
T PF01564_consen 64 EMLVHPPLLLHP--------NPKRVLII-GGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPR 131 (246)
T ss_dssp HHHHHHHHHHSS--------ST-EEEEE-ESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTT
T ss_pred HHHhhhHhhcCC--------CcCceEEE-cCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCc
Confidence 445577777543 24444433 37888888888854 44457999999999999999876543211 01247
Q ss_pred EEEEccCcchHHHHHhhhccccccc-CccEEEEcc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRS-GVDAILMDL 225 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~-~VDGILfDL 225 (452)
++++.++=. .+|++.. . .+|.|+.|+
T Consensus 132 ~~i~~~Dg~---~~l~~~~-----~~~yDvIi~D~ 158 (246)
T PF01564_consen 132 VRIIIGDGR---KFLKETQ-----EEKYDVIIVDL 158 (246)
T ss_dssp EEEEESTHH---HHHHTSS-----ST-EEEEEEES
T ss_pred eEEEEhhhH---HHHHhcc-----CCcccEEEEeC
Confidence 777765532 3444432 3 699999998
No 170
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.75 E-value=2.4 Score=40.93 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred hHHH-HhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 121 LGEV-LDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 121 l~Ev-l~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
++|. ..+|.. .-+|..++|+=.|.|+=...=|++.- .+++.+|+|..|+...+++++..+.. .++.+++.+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~~~~~d 101 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE-----GEARVLRND 101 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc-----cceEEEeec
Confidence 4444 455543 14789999999999988888887743 46899999999999999998887531 355555543
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
=. .+|...+. ...+|.|.+|==|-
T Consensus 102 a~---~~L~~~~~---~~~FDlVflDPPy~ 125 (187)
T COG0742 102 AL---RALKQLGT---REPFDLVFLDPPYA 125 (187)
T ss_pred HH---HHHHhcCC---CCcccEEEeCCCCc
Confidence 22 34444321 12499999885443
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.17 E-value=0.96 Score=44.66 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=38.7
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHH
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPEL--KLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~--g~VigfDrD~~Ai~~Ak~r 177 (452)
+...++|.=+|.|.++..+.+.+++. ..++|+|+.+.+++.|.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 55789999999999999999887643 2689999999999999765
No 172
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.17 E-value=0.75 Score=44.87 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=47.2
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
.|+.+-.....++..+||.-.--||+|+...++.+..++|+|+|+||-.. . ..+.+++++|.+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~--------~~V~~iq~d~~~ 96 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I--------PGVIFLQGDITD 96 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------C--------CCceEEeeeccC
Confidence 33333333335789999999999999999999988878899999997533 1 247777777764
No 173
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=90.05 E-value=0.4 Score=47.86 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=57.6
Q ss_pred ccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhC-------CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCC
Q 012954 117 IPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH-------PELKLHIGVDVDPSALAKARAHLNSLLHGQAHP 188 (452)
Q Consensus 117 ~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~-------p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~ 188 (452)
+|. +.+-+++.+. +.++..++|-++|.||=-.++++.+ .. ..++|+|+|+.++..|+-++.-.+..
T Consensus 30 TP~~i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~~~~---- 103 (311)
T PF02384_consen 30 TPREIVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLHGID---- 103 (311)
T ss_dssp --HHHHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHTTHH----
T ss_pred hHHHHHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhhccc----
Confidence 444 2444445554 5677789999999999888877643 33 46999999999999998765332221
Q ss_pred CceEEEEccC-cchHHHHHhhhcccccccCccEEEEccCCCccCC
Q 012954 189 HLKTHTFAKN-FRHIKSVLGQIDENILRSGVDAILMDLGMSSMQV 232 (452)
Q Consensus 189 ~~r~~li~~n-F~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QL 232 (452)
.....+.+++ |..-. .. ....+|.||.|-=++..+.
T Consensus 104 ~~~~~i~~~d~l~~~~-~~-------~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 104 NSNINIIQGDSLENDK-FI-------KNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp CBGCEEEES-TTTSHS-CT-------ST--EEEEEEE--CTCES-
T ss_pred cccccccccccccccc-cc-------cccccccccCCCCcccccc
Confidence 1122344443 32210 00 0246999999988887755
No 174
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=89.63 E-value=0.061 Score=44.29 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=36.2
Q ss_pred EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
+|.=.|.|.-+..|++.++. .+++|+|+++.+++.|++++....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~-~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPD-ARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-E-EEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC
Confidence 47778999999999999866 579999999999999998887754
No 175
>PRK04148 hypothetical protein; Provisional
Probab=89.62 E-value=1.2 Score=40.78 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r 177 (452)
+.+.+. ...+..++|.=+|.|.+-...|.+.+. .|+|+|+++.|++.++++
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh
Confidence 344443 234578999999999867777777653 599999999999998775
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.03 E-value=1.1 Score=46.97 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=61.6
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc-C
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK-N 198 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~-n 198 (452)
+.-++-+|+-.++|..++|==+|.|| .+.+. +-+ .++||.|+|..++.-|+.+|+.|+-. .+.++.. +
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGg---iLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~------~~~~~~~~D 254 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGG---ILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE------DYPVLKVLD 254 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccH---HHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC------ceeEEEecc
Confidence 56666777666799999999999995 33333 333 47999999999999999999988521 2333332 3
Q ss_pred cchHHHHHhhhcccccccCccEEEEc--cCCCc
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMD--LGMSS 229 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfD--LGvSS 229 (452)
=.+++ | ..+.||+|+-| -|.||
T Consensus 255 a~~lp--l-------~~~~vdaIatDPPYGrst 278 (347)
T COG1041 255 ATNLP--L-------RDNSVDAIATDPPYGRST 278 (347)
T ss_pred cccCC--C-------CCCccceEEecCCCCccc
Confidence 33333 2 22359999987 34444
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.97 E-value=3.6 Score=42.50 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=68.6
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhh
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPE---LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQI 209 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~---~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~ 209 (452)
++..+||.=.|+|-++..+|+.+.. ...++++|+..++|+.+.++|..-.. +...+.-+++.|.....++...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhcccc
Confidence 5668999999999999999998642 24699999999999999998872111 1346777999998877766431
Q ss_pred cccccccCccEEEEccCCCccCCCCCC
Q 012954 210 DENILRSGVDAILMDLGMSSMQVNNPE 236 (452)
Q Consensus 210 ~~~l~~~~VDGILfDLGvSS~QLDd~~ 236 (452)
.. ..... ++|=||-|-.-++.++
T Consensus 152 ~~---~~~~r-~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 152 EN---RSRPT-TILWLGSSIGNFSRPE 174 (319)
T ss_pred cc---cCCcc-EEEEeCccccCCCHHH
Confidence 00 11233 5666888776666544
No 178
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=88.46 E-value=1.7 Score=38.81 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCCEEEEEccCCChhHHHHHHh-----CCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRA-----HPELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~-----~p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
.+...+||.-.|.| |-..+|.. .++ -.|+|+|.++..++.+.++.+...
T Consensus 24 ~~~~~vvD~GsG~G-yLs~~La~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKG-YLSRALAHLLCNSSPN-LRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChh-HHHHHHHHHHHhcCCC-CeEEEEECCcHHHHHHHHHHHHhc
Confidence 46779999999999 77776666 444 469999999999999988776653
No 179
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=88.33 E-value=0.29 Score=47.99 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhc
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID 385 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~ 385 (452)
..+.++|..+..+|||||+++|+-|+.-+-.+++.++.-+.+
T Consensus 130 ~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 130 PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK 171 (233)
T ss_dssp SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence 346789999999999999999999999999999988776544
No 180
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.99 E-value=1.7 Score=49.16 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
+++|+|+|+.|++.|+++++.++. ..++++.++++.++..... ...+|.|+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~-------~~~~d~IvtN 310 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGV-----AELITFEVKDVADLKNPLP-------KGPTGLVISN 310 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeCChhhcccccc-------cCCCCEEEEC
Confidence 599999999999999999987764 2367888888877532111 1247888887
No 181
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=87.76 E-value=1.2 Score=44.36 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=42.3
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
.|.+.... ..+-..++|.-+|-|.-|..+.+++|.. .|.|||-++++|+.|+++|-+
T Consensus 20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~ 76 (257)
T COG4106 20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPD 76 (257)
T ss_pred HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCC
Confidence 34444443 3456789999999994444445558874 699999999999999988743
No 182
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=87.40 E-value=1.9 Score=43.81 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=56.3
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
..++=.=.|.||=+.++|+..+ ..+++.+|+|++.++.|++.|....... ...|++++.+ +-.+++....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~---Dg~~~v~~~~---- 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIID---DGVEFLRDCE---- 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEec---cHHHHHHhCC----
Confidence 4555566899999999997665 4579999999999999999886653110 1247776543 3334555432
Q ss_pred ccCccEEEEcc
Q 012954 215 RSGVDAILMDL 225 (452)
Q Consensus 215 ~~~VDGILfDL 225 (452)
.++|.|+.|.
T Consensus 148 -~~fDvIi~D~ 157 (282)
T COG0421 148 -EKFDVIIVDS 157 (282)
T ss_pred -CcCCEEEEcC
Confidence 3699999995
No 183
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.35 E-value=0.81 Score=48.59 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=70.9
Q ss_pred CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 131 SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 131 ~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
+.+++.++|.+.-.|--|..+..-..+.++++|||+|.+=.+.-++.|...+. ..+..+.+.|-+. -+-..+
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t-~~~~~~- 282 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNT-ATPEKF- 282 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCC-CCcccc-
Confidence 56889999999999987777776666678999999999988877777766543 2455667777664 111111
Q ss_pred ccccccCccEEEEccCCCccCCCCCCCCcccCCCCCCcccCCCC
Q 012954 211 ENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQ 254 (452)
Q Consensus 211 ~~l~~~~VDGILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~ 254 (452)
..|..||.|=|+|- +-=+.||+|++.
T Consensus 283 -----~~v~~iL~DpscSg-------------Sgm~~r~~~~~~ 308 (413)
T KOG2360|consen 283 -----RDVTYILVDPSCSG-------------SGMVSRQDEDPG 308 (413)
T ss_pred -----cceeEEEeCCCCCC-------------CccccceeeccC
Confidence 35889999999873 112578888875
No 184
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=86.58 E-value=5.2 Score=41.26 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
.++.|. ...++.++|.-+|+|==+..+++..|. ..|.-+|+|..|++.|++.++..
T Consensus 150 Ll~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 150 LLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred HHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHc
Confidence 355664 345679999999999777777777775 56999999999999999988764
No 185
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=86.09 E-value=1 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=25.4
Q ss_pred CChhHHHHHHhCCCCC--EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEE
Q 012954 144 AAGHSSAIIRAHPELK--LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAI 221 (452)
Q Consensus 144 ~GGHS~aIL~~~p~~g--~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGI 221 (452)
.|.=|..|++.+.+.+ +++++|.++. .+.+.+.+++.+. ..+++++++++.+.-..+. ...+|.|
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~-------~~~~dli 73 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLP-------DGPIDLI 73 (106)
T ss_dssp --------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHH-------H--EEEE
T ss_pred cccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcC-------CCCEEEE
Confidence 5655566666666554 7999999995 2223333332222 2379999999976533332 1369999
Q ss_pred EEccC
Q 012954 222 LMDLG 226 (452)
Q Consensus 222 LfDLG 226 (452)
++|-+
T Consensus 74 ~iDg~ 78 (106)
T PF13578_consen 74 FIDGD 78 (106)
T ss_dssp EEES-
T ss_pred EECCC
Confidence 99975
No 186
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=85.99 E-value=2.8 Score=43.16 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=64.3
Q ss_pred hHHHHhhccCC--CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 121 LGEVLDVFSSS--RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 121 l~Evl~~L~~~--~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
+.-|++.++.. -.+...+|...|.|-=|..+|..+|. ++++|+|+.+.|+..|.++-+.+.. ..++..+|-.
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~ 207 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNI 207 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecc
Confidence 44566666421 13458999999999999999999995 6799999999999999987766643 2366655433
Q ss_pred cchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 199 FRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 199 F~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
++. +.+. ++. +..+++|+++=|==|=
T Consensus 208 me~-d~~~-~~~--l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 208 MES-DASD-EHP--LLEGKIDLLVSNPPYI 233 (328)
T ss_pred ccc-cccc-ccc--cccCceeEEecCCCcc
Confidence 321 1111 110 1234677776554443
No 187
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.62 E-value=3 Score=44.32 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=40.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.+||+|+|+.+++.|+.+....+- ...+++.+..+..+...+ ..+|.||.|.=|
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~---------~~~gvvI~NPPY 309 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGV-----GDLIEFKQADATDLKEPL---------EEYGVVISNPPY 309 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCC-----CceEEEEEcchhhCCCCC---------CcCCEEEeCCCc
Confidence 488999999999999998877664 347888888888765433 247778876544
No 188
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=85.36 E-value=5.9 Score=37.17 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
.+..++|...|.|.-+..+++.. ..++|+|.++.+++.+++++...+. .++.+...++.++. ...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~---~~~--- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLA---EKG--- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhh---cCC---
Confidence 36789999999997666666542 3489999999999999987765321 14666666665432 111
Q ss_pred ccccCccEEEEc
Q 012954 213 ILRSGVDAILMD 224 (452)
Q Consensus 213 l~~~~VDGILfD 224 (452)
...+|.|+..
T Consensus 110 --~~~~D~i~~~ 119 (224)
T TIGR01983 110 --AKSFDVVTCM 119 (224)
T ss_pred --CCCccEEEeh
Confidence 1368888864
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=85.31 E-value=3.4 Score=41.73 Aligned_cols=98 Identities=4% Similarity=0.060 Sum_probs=75.1
Q ss_pred cCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954 111 QQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL 190 (452)
Q Consensus 111 ~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~ 190 (452)
+.|+-|-+-.++.+++... ..++..++..=-|-|.=|..+|++. .+|+|+.+|+..++.-++++..+ .
T Consensus 9 GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~--------~ 76 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPY--------D 76 (259)
T ss_pred ccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccc--------c
Confidence 3677787888999999998 4678999999999999999999875 35999999999999888776532 3
Q ss_pred eEEEEccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
+++++++++-.++ +.++ ...+-|+.||=|+
T Consensus 77 n~~vi~~DaLk~d--~~~l------~~~~~vVaNlPY~ 106 (259)
T COG0030 77 NLTVINGDALKFD--FPSL------AQPYKVVANLPYN 106 (259)
T ss_pred ceEEEeCchhcCc--chhh------cCCCEEEEcCCCc
Confidence 7999998875432 1110 0356788888663
No 190
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=84.83 E-value=3.3 Score=40.00 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=38.6
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak 175 (452)
.+.+.++.+. ..+++.++|.-+|.|-++..+.++ +- .|+|+|+.+.|++.+.
T Consensus 22 ~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~--~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 22 LLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GH--RVLGVELSEIAVEQFF 73 (213)
T ss_pred HHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CC--eEEEEeCCHHHHHHHH
Confidence 3445556553 236789999999999777777653 33 5999999999999763
No 191
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=84.49 E-value=7.3 Score=37.74 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred cccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh-------ccCCCCCC
Q 012954 117 IPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL-------LHGQAHPH 189 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~-------~~~~~~~~ 189 (452)
.|-.+.++++.+. ..++++|+|.=-|-|. .........+..+.+|+++++...+.|+..++.+ +.. .
T Consensus 27 ~~~~~~~il~~~~-l~~~dvF~DlGSG~G~-~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~----~ 100 (205)
T PF08123_consen 27 SPEFVSKILDELN-LTPDDVFYDLGSGVGN-VVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR----P 100 (205)
T ss_dssp HHHHHHHHHHHTT---TT-EEEEES-TTSH-HHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------
T ss_pred CHHHHHHHHHHhC-CCCCCEEEECCCCCCH-HHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc----c
Confidence 3456788888887 5789999999999994 3222222334566899999999998887644332 221 2
Q ss_pred ceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 190 LKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 190 ~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
.++.+.+++|-+-+.. ... ....|.|++|
T Consensus 101 ~~v~l~~gdfl~~~~~-~~~-----~s~AdvVf~N 129 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFV-KDI-----WSDADVVFVN 129 (205)
T ss_dssp -EEEEECS-TTTHHHH-HHH-----GHC-SEEEE-
T ss_pred ccceeeccCccccHhH-hhh-----hcCCCEEEEe
Confidence 4788899999765421 111 1246777776
No 192
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=83.85 E-value=3.1 Score=41.72 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCCCcccc-chHHHHhhccCCC-CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 112 QQSSHIPV-MLGEVLDVFSSSR-TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 112 ~~~~H~PV-Ll~Evl~~L~~~~-~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
....|+-. |..-.++.|.-+. ..+.++|.-+|.| =|..+|+.-+ -..+|+|+.|.+++.|.+
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsG-LSg~vL~~~G--h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSG-LSGSVLSDSG--HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCC-cchheeccCC--ceEEeecCCHHHHHHHHH
Confidence 34445544 7788888887321 1578999999999 8888887654 358999999999999976
No 193
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=83.34 E-value=1.5 Score=43.70 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhc
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID 385 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~ 385 (452)
..+++|..+..+||||||++|+.|+.=+.-.+++++..+..
T Consensus 134 d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~ 174 (238)
T COG2226 134 DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF 174 (238)
T ss_pred CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHH
Confidence 67889999999999999999999999999888877766543
No 194
>PLN02823 spermine synthase
Probab=83.29 E-value=5.4 Score=41.51 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCce
Q 012954 112 QQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLK 191 (452)
Q Consensus 112 ~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r 191 (452)
+...|.|.+.. +.| ..++-.=.|.|+-...+|+..+. .+|..+|+|++.++.|++.+...... ....|
T Consensus 91 E~l~h~~l~~~--------~~p-k~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~--~~dpr 158 (336)
T PLN02823 91 ESLVHPALLHH--------PNP-KTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREA--FCDKR 158 (336)
T ss_pred HHHHhHHHhhC--------CCC-CEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhccccccc--ccCCc
Confidence 45556665532 223 35566666878778888875443 57999999999999999876432110 01247
Q ss_pred EEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 192 THTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 192 ~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
++++.++-. ++|... ...+|.|++|+
T Consensus 159 v~v~~~Da~---~~L~~~-----~~~yDvIi~D~ 184 (336)
T PLN02823 159 LELIINDAR---AELEKR-----DEKFDVIIGDL 184 (336)
T ss_pred eEEEEChhH---HHHhhC-----CCCccEEEecC
Confidence 888776543 244332 24699999997
No 195
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=82.88 E-value=0.33 Score=38.39 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=29.5
Q ss_pred HhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHh-hCCCCcHHHHHHH
Q 012954 263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARL-RGGLHSTGELVDL 309 (452)
Q Consensus 263 LN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~-~~~i~TT~eLa~i 309 (452)
||+.|.+||..+- | -..+.|++||++|+ .+++.+..||.++
T Consensus 8 iN~as~~eL~~lp---g---i~~~~A~~Iv~~R~~~G~f~s~~dL~~v 49 (65)
T PF12836_consen 8 INTASAEELQALP---G---IGPKQAKAIVEYREKNGPFKSLEDLKEV 49 (65)
T ss_dssp TTTS-HHHHHTST---T-----HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred CccCCHHHHHHcC---C---CCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence 6899999998762 1 35679999999995 5799999999864
No 196
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=81.11 E-value=1.4 Score=40.68 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCeEEEEeec-----chhHHHHHHHHHhh
Q 012954 348 SSLHACFDCLAPGGRLGVISFH-----SLEDRIVKQTFLSI 383 (452)
Q Consensus 348 ~~L~~a~~~L~pGGRLvVISFH-----SLEDRIVK~~F~~~ 383 (452)
.+|+++.++|+|||+|+|+.|. --|-..|.+|+..+
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 4566777999999999999997 35667788777665
No 197
>PLN02672 methionine S-methyltransferase
Probab=80.98 E-value=4.8 Score=48.02 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccC----------CCCCCceEEEEccCcc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHG----------QAHPHLKTHTFAKNFR 200 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~----------~~~~~~r~~li~~nF~ 200 (452)
+..++|.-.|.|-=+.+++++.+. .+|+|+|++++|++.|+++++..+.+ ......|+++++++.-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 458999999999888888888876 47999999999999999887653210 0011237888888753
No 198
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=80.53 E-value=11 Score=38.95 Aligned_cols=90 Identities=13% Similarity=0.258 Sum_probs=69.9
Q ss_pred ccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 118 PVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 118 PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
|-.++.+++.-. .++.++++.|-=|.|.=|..+|++. .+|+|+..||..+..-+++.+.-.. ..+++++++
T Consensus 44 p~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~-----~~kLqV~~g 114 (315)
T KOG0820|consen 44 PLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHG 114 (315)
T ss_pred HHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCc-----cceeeEEec
Confidence 777788887775 5799999999999999999999973 4699999999999888887754322 247888888
Q ss_pred CcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 198 NFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 198 nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
.|=.. . ...+|+++.||=|
T Consensus 115 D~lK~------d-----~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 115 DFLKT------D-----LPRFDGCVSNLPY 133 (315)
T ss_pred ccccC------C-----CcccceeeccCCc
Confidence 87322 1 1258888888754
No 199
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.16 E-value=11 Score=37.38 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=60.7
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChh--HHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGH--SSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGH--S~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
..|.|.+|.--...+.+|+++-++|.- |.++... ..-+|+++++--|++.+...++.|..++. ..-++++.+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~~~vEfvvg 103 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----SDVVEFVVG 103 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----cccceEEec
Confidence 569999997544567899998876654 3444433 23357899999999998888887876643 123566654
Q ss_pred C-cchHHHHHhhhcccccccCccEEEEccC
Q 012954 198 N-FRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 198 n-F~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
+ -+ +++..+ .++|++|+|.-
T Consensus 104 ~~~e---~~~~~~------~~iDF~vVDc~ 124 (218)
T PF07279_consen 104 EAPE---EVMPGL------KGIDFVVVDCK 124 (218)
T ss_pred CCHH---HHHhhc------cCCCEEEEeCC
Confidence 4 22 233332 36888888865
No 200
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.13 E-value=4.6 Score=34.01 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=48.8
Q ss_pred cCCChhHHHHHHhCCCCC-EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccE
Q 012954 142 LGAAGHSSAIIRAHPELK-LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDA 220 (452)
Q Consensus 142 lG~GGHS~aIL~~~p~~g-~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDG 220 (452)
+|.|..+..+++.+...+ .|+.+|.|++.++.+++. .+.++.++..+...+ .+.+ ....|.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l-~~a~----i~~a~~ 65 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVL-ERAG----IEKADA 65 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHH-HHTT----GGCESE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHH-hhcC----ccccCE
Confidence 689999999999865555 799999999998777642 145688999887544 4433 357999
Q ss_pred EEEccC
Q 012954 221 ILMDLG 226 (452)
Q Consensus 221 ILfDLG 226 (452)
++...+
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 998877
No 201
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=80.11 E-value=11 Score=40.31 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=58.3
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhcc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDE 211 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~ 211 (452)
.|+.++|+-.=.||-|.+-+.. ....|+++|.+..||+.|+++++-.+.. ..+..+++++ |+.|...-.. |
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~-g- 288 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERR-G- 288 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhc-C-
Confidence 4889999988889888876643 3346999999999999999987655432 2366777765 7666544332 2
Q ss_pred cccccCccEEEEc
Q 012954 212 NILRSGVDAILMD 224 (452)
Q Consensus 212 ~l~~~~VDGILfD 224 (452)
..+|.|++|
T Consensus 289 ----~~fDlIilD 297 (393)
T COG1092 289 ----EKFDLIILD 297 (393)
T ss_pred ----CcccEEEEC
Confidence 369999986
No 202
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=79.65 E-value=8.9 Score=39.22 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=66.9
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCC-----CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPEL-----KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~-----g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
-+-.++.|. +.++-.++|..-|.|-=+..||++.+.. ++|+.+|+.|..|+-+++|-++-+.. ...++..+
T Consensus 89 Kd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~ 164 (296)
T KOG1540|consen 89 KDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWV 164 (296)
T ss_pred HHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEE
Confidence 445567776 4577899999999998888899887663 68999999999999998876442221 11246667
Q ss_pred ccCcchHHHHHhhhcccccccCccEEEEccCCC
Q 012954 196 AKNFRHIKSVLGQIDENILRSGVDAILMDLGMS 228 (452)
Q Consensus 196 ~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvS 228 (452)
.+|=+.|+ + ....+|+..+=+|+=
T Consensus 165 ~~dAE~Lp--F-------dd~s~D~yTiafGIR 188 (296)
T KOG1540|consen 165 EGDAEDLP--F-------DDDSFDAYTIAFGIR 188 (296)
T ss_pred eCCcccCC--C-------CCCcceeEEEeccee
Confidence 76665543 1 124677777777764
No 203
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=79.17 E-value=2.3 Score=42.86 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=92.9
Q ss_pred CCceEEecCcccccceeeeeecCCCCCCcceeeE-eeeccccccc---cccchhhHhhhhcccccccccchhccccccCC
Q 012954 24 SNNYLVFPSSVKLKSAAVFGVSLPNPNPWAGVAV-FTTFPFRAAN---DSKNKKVAKAKATSARVGVGMGLVKEKRRTRS 99 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 99 (452)
..+|.+||+..+++- -++|+---|-|-+. +++=-+..+. ++--| +=+-+.-
T Consensus 46 ~~~~~~~~~g~~~~~-----d~~~~~~~d~~~vY~~~~ge~~~~~i~~~~~yK--------------------LvPt~~G 100 (287)
T COG2521 46 ERRIAVFPEGSRIKL-----DELPKILEDRGEVYFLKGGEVYKASIAAEHYYK--------------------LVPTPPG 100 (287)
T ss_pred eeeEEEcccccEEEe-----hhhhhhhcccceEEEEeCCeEEEEEeccCccEE--------------------EecCCCC
Confidence 346899998876653 36788888988444 4433332221 11111 1111111
Q ss_pred ccCCchhhhhhcCCCCccccchHHHHhhcc-----CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHH
Q 012954 100 NKDYDYESIIQQQQSSHIPVMLGEVLDVFS-----SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174 (452)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~-----~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~A 174 (452)
+-+++-.+--+|-.+..+...+.+. -++.|..++|++.|.|.-+..-+++ ...+||.+..||..|+.|
T Consensus 101 -----~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa 173 (287)
T COG2521 101 -----APTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELA 173 (287)
T ss_pred -----CCeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEee
Confidence 1233333445677777777666663 1246899999999999666666655 223799999999999988
Q ss_pred HHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEc
Q 012954 175 RAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMD 224 (452)
Q Consensus 175 k~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfD 224 (452)
+ |.++..+ -...++.++++.-. ++++.++ ...+|+|+=|
T Consensus 174 ~--lNPwSr~--l~~~~i~iilGD~~---e~V~~~~----D~sfDaIiHD 212 (287)
T COG2521 174 K--LNPWSRE--LFEIAIKIILGDAY---EVVKDFD----DESFDAIIHD 212 (287)
T ss_pred c--cCCCCcc--ccccccEEecccHH---HHHhcCC----ccccceEeeC
Confidence 6 4454221 11124677776533 3445443 2469999743
No 204
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=78.79 E-value=2.9 Score=42.61 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhhhc
Q 012954 346 LESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSIID 385 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~~~ 385 (452)
.+++|..|..+||||||+.++-|--.|-..++.|+..+..
T Consensus 193 ~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 193 IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSF 232 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhh
Confidence 4688899999999999999999999998999998887754
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=78.39 E-value=14 Score=37.70 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchHHHHHhhhcc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDE 211 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~ 211 (452)
.+..++|+=.=.||-|.+-+. +....|+++|....|++.|+++++-.+.+ ..+++++..+ |..+.. ++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~-~~~--- 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKR-LKK--- 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHH-HHH---
T ss_pred CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHH-Hhc---
Confidence 578999998888988887664 23346999999999999999987654432 2367777654 555544 332
Q ss_pred cccccCccEEEEc
Q 012954 212 NILRSGVDAILMD 224 (452)
Q Consensus 212 ~l~~~~VDGILfD 224 (452)
...+|.|++|
T Consensus 193 ---~~~fD~IIlD 202 (286)
T PF10672_consen 193 ---GGRFDLIILD 202 (286)
T ss_dssp ---TT-EEEEEE-
T ss_pred ---CCCCCEEEEC
Confidence 2379999987
No 206
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=78.06 E-value=7.3 Score=37.44 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=48.2
Q ss_pred HHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc
Q 012954 123 EVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR 200 (452)
Q Consensus 123 Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~ 200 (452)
.+++... ..+...+||.=-|.|-.+.+|++++|+. +++.+|. |++++.+++ . .|++++-++|-
T Consensus 91 ~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~------~------~rv~~~~gd~f 153 (241)
T PF00891_consen 91 ILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE------A------DRVEFVPGDFF 153 (241)
T ss_dssp HHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH------T------TTEEEEES-TT
T ss_pred hhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc------c------cccccccccHH
Confidence 3444543 4466799999999999999999999997 6899999 999998887 1 27888888873
No 207
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=76.86 E-value=11 Score=39.24 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=39.1
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKA 174 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~A 174 (452)
=+.+...|.+ -.|..++|.=+|+|.|+-.++.+-+ ..|+|||-++.-+.+.
T Consensus 104 W~rl~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 104 WDRLLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQF 154 (315)
T ss_pred HHHHHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHH
Confidence 3455556643 4789999999999999999998744 3699999887766553
No 208
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=76.65 E-value=5.6 Score=39.59 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=42.0
Q ss_pred ccccchHHHHhhccC---CCCCCEEEEEccCCChh--HHHH--HHhCCC----CCEEEEEeCCHHHHHHHHHH
Q 012954 116 HIPVMLGEVLDVFSS---SRTITSFVDCTLGAAGH--SSAI--IRAHPE----LKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 116 H~PVLl~Evl~~L~~---~~~ggiyVDaTlG~GGH--S~aI--L~~~p~----~g~VigfDrD~~Ai~~Ak~r 177 (452)
|.-.|.+.++..|.. ..++-.+.|+-+|.|-. |.+| ++..+. ...|+|+|+|+.+|+.|++.
T Consensus 79 ~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 79 HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 555566666655421 12345799999999964 4554 333442 35799999999999999864
No 209
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=76.28 E-value=5.1 Score=40.78 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=32.9
Q ss_pred cCCCh--hHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHh-hhccCCCCCCceEEEEccCcchH
Q 012954 142 LGAAG--HSSAIIRA-HPELKLHIGVDVDPSALAKARAHLN-SLLHGQAHPHLKTHTFAKNFRHI 202 (452)
Q Consensus 142 lG~GG--HS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~-~~~~~~~~~~~r~~li~~nF~~i 202 (452)
+|.|- =|..+|.+ +.....++++|+|++|++.|++.+. ..+. ..+.+++.++....
T Consensus 127 IGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 127 IGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDV 186 (276)
T ss_dssp E---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG
T ss_pred EcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhcc
Confidence 56663 45566654 4444568999999999999998777 2332 23677777776544
No 210
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=76.21 E-value=7.5 Score=37.99 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH 201 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~ 201 (452)
.-+..+|.-.|+|-=|..+.... ..|.++|+.+.|++.|++|+... .++.+++..+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~ 100 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPE 100 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCC
Confidence 44678999999995555554443 46999999999999999999764 257777766644
No 211
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=76.14 E-value=6 Score=40.16 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=50.1
Q ss_pred cccchHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 117 IPVMLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 117 ~PVLl~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
-|-..++-|..|... ......+|.-+-+|==|..|.+.++.. .|+|+|+|+.-|+.|++.+..+
T Consensus 41 ~~~~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 41 NPGDSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CCCCCChhhhhccccccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhcccc
Confidence 344566667777421 235678999999999999999888874 6999999999999999987654
No 212
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=75.88 E-value=8.2 Score=37.44 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=37.2
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKAR 175 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak 175 (452)
|.+.++.+. ..+++.++|.-+|.|-++..+.+ .+ -.|+|+|+.+.|++.+.
T Consensus 26 L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~-~G--~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 26 LQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAE-QG--HEVLGVELSELAVEQFF 76 (218)
T ss_pred HHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHh-CC--CeEEEEccCHHHHHHHH
Confidence 444555444 23678999999999966666654 33 35999999999999864
No 213
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=75.56 E-value=2.9 Score=38.16 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhh
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSI 383 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~ 383 (452)
....+|..+.++|+|||+++|+.|.- ++......+..+
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~-~~~~~~~~~~~~ 96 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNK-SNQSVTTFMQGW 96 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCC-CChHHHHHHHHH
Confidence 45678888899999999999999874 555555555444
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=75.56 E-value=8.2 Score=38.92 Aligned_cols=89 Identities=9% Similarity=-0.056 Sum_probs=57.2
Q ss_pred cCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCc
Q 012954 111 QQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHL 190 (452)
Q Consensus 111 ~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~ 190 (452)
|+...|.|.+.+ +.|..+.| +=-|.||=...+|+. +. +|.-+|+|++.++.+++.|...... ....
T Consensus 59 HEmLvHppl~~h--------~~pk~VLI-iGGGDGg~~REvLkh-~~--~v~mVeID~~Vv~~~k~~lP~~~~~--~~Dp 124 (262)
T PRK00536 59 SELLAHMGGCTK--------KELKEVLI-VDGFDLELAHQLFKY-DT--HVDFVQADEKILDSFISFFPHFHEV--KNNK 124 (262)
T ss_pred HHHHHHHHHhhC--------CCCCeEEE-EcCCchHHHHHHHCc-CC--eeEEEECCHHHHHHHHHHCHHHHHh--hcCC
Confidence 366678776632 23444443 344778888889865 43 6999999999999999866543221 1234
Q ss_pred eEEEEccCcchHHHHHhhhcccccccCccEEEEcc
Q 012954 191 KTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDL 225 (452)
Q Consensus 191 r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDL 225 (452)
|++++. .+.+.. .+.+|.|+.|+
T Consensus 125 Rv~l~~--------~~~~~~----~~~fDVIIvDs 147 (262)
T PRK00536 125 NFTHAK--------QLLDLD----IKKYDLIICLQ 147 (262)
T ss_pred CEEEee--------hhhhcc----CCcCCEEEEcC
Confidence 788764 122211 24699999994
No 215
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=72.66 E-value=13 Score=39.55 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=71.3
Q ss_pred cCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhC---CCCCEEEEEeCCHHHHHHHHHH
Q 012954 101 KDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAH---PELKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 101 ~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~---p~~g~VigfDrD~~Ai~~Ak~r 177 (452)
.+...+.|-+++...=+|||. |. .+|+..++|+++-=||-|.++|+.+ ++.|.|+|=|.|+.=+..-...
T Consensus 130 ~e~~vg~i~rqeavSmlPvL~------L~-v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q 202 (375)
T KOG2198|consen 130 LETGVGNIYRQEAVSMLPVLA------LG-VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQ 202 (375)
T ss_pred hhcccccchhhhhhhccchhh------cc-cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHH
Confidence 345556666666666777774 33 4799999999999999999999984 2346899999998877665554
Q ss_pred HhhhccCCCCCCceEEEEccCcchH--HHH-HhhhcccccccCccEEEEccCCCc
Q 012954 178 LNSLLHGQAHPHLKTHTFAKNFRHI--KSV-LGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 178 L~~~~~~~~~~~~r~~li~~nF~~i--~~~-L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
++.. . ...+...||... +.. ++..+ ......+|=||.|-=+|.
T Consensus 203 ~~~l-~-------~~~~~v~~~~~~~~p~~~~~~~~-~~~~~~fDrVLvDVPCS~ 248 (375)
T KOG2198|consen 203 LKRL-P-------SPNLLVTNHDASLFPNIYLKDGN-DKEQLKFDRVLVDVPCSG 248 (375)
T ss_pred Hhcc-C-------CcceeeecccceeccccccccCc-hhhhhhcceeEEecccCC
Confidence 4222 1 111223333321 111 11100 012346999999999987
No 216
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.60 E-value=27 Score=34.25 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccc
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDEN 212 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~ 212 (452)
...++++.-.|.|==|.++.+...+...+.+.|+.|.|.+.+++-..... .++..++.++.. -|.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~---~l~----- 107 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLS---GLR----- 107 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHh---hhc-----
Confidence 45799999999998888888777666788999999999999877544321 245556655431 222
Q ss_pred ccccCccEEEEccCC
Q 012954 213 ILRSGVDAILMDLGM 227 (452)
Q Consensus 213 l~~~~VDGILfDLGv 227 (452)
.++||-++||=+|
T Consensus 108 --~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 108 --NESVDVLVFNPPY 120 (209)
T ss_pred --cCCccEEEECCCc
Confidence 3579999998776
No 217
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=70.94 E-value=18 Score=31.44 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHH
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAK 173 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~ 173 (452)
.+++.++|.=.|.|..+..+ ...+. .++|+|.++.+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGF--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTS--EEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCC--EEEEEECCHHHHhh
Confidence 47889999999999776666 45444 69999999999976
No 218
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=70.66 E-value=3.3 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.9
Q ss_pred HhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhh-CCCCcHHHHHH
Q 012954 263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR-GGLHSTGELVD 308 (452)
Q Consensus 263 LN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~-~~i~TT~eLa~ 308 (452)
||+.+.++|..++---| ...|++|+++|.. +++++..||..
T Consensus 10 vNta~~~~L~~~ipgig-----~~~a~~Il~~R~~~g~~~s~~dL~~ 51 (69)
T TIGR00426 10 INTATAEELQRAMNGVG-----LKKAEAIVSYREEYGPFKTVEDLKQ 51 (69)
T ss_pred CcCCCHHHHHhHCCCCC-----HHHHHHHHHHHHHcCCcCCHHHHHc
Confidence 78899999988644444 3579999999984 57988888865
No 219
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=70.18 E-value=16 Score=35.99 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=37.2
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
|.+-+..+. ..+++.+++-=+|.| |....|...+- .|+|+|.-+.|++.+.+
T Consensus 32 L~~~~~~l~-~~~~~rvLvPgCGkg-~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 32 LVKHFSKLN-INDSSVCLIPMCGCS-IDMLFFLSKGV--KVIGIELSEKAVLSFFS 83 (226)
T ss_pred HHHHHHhcC-CCCCCeEEEeCCCCh-HHHHHHHhCCC--cEEEEecCHHHHHHHHH
Confidence 333345554 235679999999999 55555555544 49999999999998865
No 220
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=69.71 E-value=6.3 Score=36.55 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
+.++.+|..+.++|+|||++++..|.
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 34788899999999999999997654
No 221
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=69.32 E-value=2.1 Score=33.73 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEE
Q 012954 344 KTLESSLHACFDCLAPGGRLGV 365 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvV 365 (452)
+..+.+|..+..+|+|||+++|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7889999999999999999986
No 222
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=67.45 E-value=7 Score=37.46 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 346 LESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
++.+|..+..+|+|||+++|..|++
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecC
Confidence 5689999999999999999988886
No 223
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=66.11 E-value=11 Score=34.51 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCeEEEEeecch-hHHH
Q 012954 341 DELKTLESSLHACFDCLAPGGRLGVISFHSL-EDRI 375 (452)
Q Consensus 341 ~EL~~L~~~L~~a~~~L~pGGRLvVISFHSL-EDRI 375 (452)
++...++.+|..+..+|+|||+++++....- ++.+
T Consensus 114 ~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~ 149 (179)
T TIGR00537 114 DGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDT 149 (179)
T ss_pred chHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHH
Confidence 3445578999999999999999988765433 3344
No 224
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=64.76 E-value=25 Score=34.21 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.8
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
+|..+. .|+..++|.=+|.| --.+.|....+ ...+|+|+|++.+..+.+
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG-~LL~~L~~~k~-v~g~GvEid~~~v~~cv~ 54 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDG-ELLAYLKDEKQ-VDGYGVEIDPDNVAACVA 54 (193)
T ss_pred HHHHHc--CCCCEEEecCCCch-HHHHHHHHhcC-CeEEEEecCHHHHHHHHH
Confidence 444453 48999999999998 44455554433 358999999999988765
No 225
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=63.88 E-value=13 Score=36.41 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHh
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLN 179 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~ 179 (452)
...++|.-.|+| |-..=|.+-+-.+.|.|+|-.+.|++.|+..-+
T Consensus 68 A~~VlDLGtGNG-~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe 112 (227)
T KOG1271|consen 68 ADRVLDLGTGNG-HLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE 112 (227)
T ss_pred ccceeeccCCch-HHHHHHHHhcCCCCccccccCHHHHHHHHHHHH
Confidence 348999999999 766666553333458999999999999876433
No 226
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=63.30 E-value=5.5 Score=32.92 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEE
Q 012954 344 KTLESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVI 366 (452)
++.+.+|+.+.+.|+|||+++|-
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEE
Confidence 67778899999999999999874
No 227
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=61.12 E-value=9.2 Score=36.05 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeecchhH
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVISFHSLED 373 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVISFHSLED 373 (452)
.+.+..++..+..+|+|||+++++++.+-+|
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~ 140 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLIVAAMDTAD 140 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Confidence 3467889999999999999998888877655
No 228
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=60.26 E-value=9.9 Score=31.60 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
...++.++..+.++|+|||+++ ++||
T Consensus 98 ~~~~~~~l~~~~~~Lk~gG~li-~~~~ 123 (124)
T TIGR02469 98 GGLLQEILEAIWRRLRPGGRIV-LNAI 123 (124)
T ss_pred chhHHHHHHHHHHHcCCCCEEE-EEec
Confidence 3456688999999999999964 5554
No 229
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=59.30 E-value=9.1 Score=37.86 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeecchhH
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVISFHSLED 373 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVISFHSLED 373 (452)
+.....+|..+..+|+|||+++++.|..-+-
T Consensus 158 ~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 158 VVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 3457888999999999999999999876543
No 230
>PRK06940 short chain dehydrogenase; Provisional
Probab=59.21 E-value=52 Score=32.07 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=47.5
Q ss_pred CCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH---HHHhhhcccccccCcc
Q 012954 143 GAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK---SVLGQIDENILRSGVD 219 (452)
Q Consensus 143 G~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~---~~L~~~~~~l~~~~VD 219 (452)
|+||=-.++.+.+.....|+.+|++++.++...+.++..+ .++.++..+..+-. ..+.+.. ....+|
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~i~~~~~~~~---~~g~id 78 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-------FDVSTQEVDVSSRESVKALAATAQ---TLGPVT 78 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEeecCCHHHHHHHHHHHH---hcCCCC
Confidence 4455555666554445679999999887766655554432 25666666665543 3443321 124699
Q ss_pred EEEEccCCC
Q 012954 220 AILMDLGMS 228 (452)
Q Consensus 220 GILfDLGvS 228 (452)
+++.+=|+.
T Consensus 79 ~li~nAG~~ 87 (275)
T PRK06940 79 GLVHTAGVS 87 (275)
T ss_pred EEEECCCcC
Confidence 999999985
No 231
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=59.03 E-value=11 Score=35.46 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecch
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSL 371 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSL 371 (452)
+.+...+..+..+|+|||+++|+.+.+-
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~ 137 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDT 137 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 3567889999999999999988887653
No 232
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=58.33 E-value=12 Score=41.28 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=52.8
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
--+||-.-|=+++- ...+.+++|+.+|.|==+.++.... ++|||+.++++|++.|+..-+..+ -.+.+++
T Consensus 367 ~aevLys~i~e~~~-l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ng------isNa~Fi 436 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQING------ISNATFI 436 (534)
T ss_pred HHHHHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcC------ccceeee
Confidence 44666666666665 4577899999999996666665543 469999999999999987544332 2367777
Q ss_pred cc
Q 012954 196 AK 197 (452)
Q Consensus 196 ~~ 197 (452)
.+
T Consensus 437 ~g 438 (534)
T KOG2187|consen 437 VG 438 (534)
T ss_pred ec
Confidence 77
No 233
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=58.10 E-value=6.1 Score=37.09 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecchhH
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSLED 373 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLED 373 (452)
..+...|+.+.++|+|||++++ .+..+|.
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~-~~~~~~~ 150 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVI-DAILLET 150 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEE-EeecHHH
Confidence 4567789999999999999974 6666665
No 234
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=57.94 E-value=19 Score=35.51 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=31.9
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
.+-++.++..+..+..+|+|||+++++.-.+-.+. |...|++
T Consensus 189 ~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~-v~~~l~~ 230 (251)
T TIGR03704 189 ADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL-AVEAFAR 230 (251)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHH
Confidence 35688899999999999999999998765554443 4445554
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=56.55 E-value=43 Score=36.16 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=44.2
Q ss_pred hHHHH--HHhCCCCCEEEEEeCCHHHHHHHHHH--HhhhccCCCCCCceEEEEccC-cchHHHHHhhhcccccccCccEE
Q 012954 147 HSSAI--IRAHPELKLHIGVDVDPSALAKARAH--LNSLLHGQAHPHLKTHTFAKN-FRHIKSVLGQIDENILRSGVDAI 221 (452)
Q Consensus 147 HS~aI--L~~~p~~g~VigfDrD~~Ai~~Ak~r--L~~~~~~~~~~~~r~~li~~n-F~~i~~~L~~~~~~l~~~~VDGI 221 (452)
+-.++ |-++|..+.+.-+|.||..++.+++. |.....+ .....|++.+.+. | ++++... ..+|.|
T Consensus 300 DGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~-sf~dpRv~Vv~dDAf----~wlr~a~-----~~fD~v 369 (508)
T COG4262 300 DGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQG-SFSDPRVTVVNDDAF----QWLRTAA-----DMFDVV 369 (508)
T ss_pred chHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccC-CccCCeeEEEeccHH----HHHHhhc-----ccccEE
Confidence 44443 33588777899999999999999842 2221110 1134588887754 4 3454432 379999
Q ss_pred EEcc
Q 012954 222 LMDL 225 (452)
Q Consensus 222 LfDL 225 (452)
+.||
T Consensus 370 IVDl 373 (508)
T COG4262 370 IVDL 373 (508)
T ss_pred EEeC
Confidence 9997
No 236
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=56.47 E-value=11 Score=35.00 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.6
Q ss_pred HhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhh-CCCCcHHHHHH
Q 012954 263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR-GGLHSTGELVD 308 (452)
Q Consensus 263 LN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~-~~i~TT~eLa~ 308 (452)
||+.|.+|| +-+-- =..+.|.+|+.+|+. +++.+..||.+
T Consensus 91 iNtAs~eeL-~~lpg-----IG~~kA~aIi~yRe~~G~f~sv~dL~~ 131 (149)
T COG1555 91 INTASAEEL-QALPG-----IGPKKAQAIIDYREENGPFKSVDDLAK 131 (149)
T ss_pred ccccCHHHH-HHCCC-----CCHHHHHHHHHHHHHcCCCCcHHHHHh
Confidence 799999999 32322 235689999999986 59999999987
No 237
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.79 E-value=1.1e+02 Score=28.99 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=49.6
Q ss_pred CEEEEEccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQID 210 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~ 210 (452)
.+++ .|=|.||=-.++.+.+ ..+.+|+.++++++.++...+.+...+. ++.++..+..+.+++ +.+..
T Consensus 7 k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-------EAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-------cEEEEEcCCCCHHHHHHHHHHHH
Confidence 3443 4555555444444442 1234699999999888777666655421 456666666654433 33221
Q ss_pred ccccccCccEEEEccCCC
Q 012954 211 ENILRSGVDAILMDLGMS 228 (452)
Q Consensus 211 ~~l~~~~VDGILfDLGvS 228 (452)
. ....+|+++.+-|+.
T Consensus 79 ~--~~~~id~li~~ag~~ 94 (254)
T PRK07478 79 E--RFGGLDIAFNNAGTL 94 (254)
T ss_pred H--hcCCCCEEEECCCCC
Confidence 1 013699999999986
No 238
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=55.61 E-value=12 Score=35.45 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHH
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTF 380 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F 380 (452)
....+|..+..+|+|||+++++.++.-.-...+++.
T Consensus 129 ~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 164 (231)
T TIGR02752 129 DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLY 164 (231)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHH
Confidence 345678888999999999999998875555555543
No 239
>PRK12939 short chain dehydrogenase; Provisional
Probab=54.50 E-value=1.1e+02 Score=28.44 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=48.1
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|-|.||=-.++.+.+ .....|++++++++.++...+.++..+ .++.++..++.+...+ +..... ..
T Consensus 12 ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (250)
T PRK12939 12 VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-------GRAHAIAADLADPASVQRFFDAAAA--AL 82 (250)
T ss_pred EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 4444444444444432 122368999999887776666554432 2577777777765443 332211 01
Q ss_pred cCccEEEEccCCCcc
Q 012954 216 SGVDAILMDLGMSSM 230 (452)
Q Consensus 216 ~~VDGILfDLGvSS~ 230 (452)
.++|+|+..-|++..
T Consensus 83 ~~id~vi~~ag~~~~ 97 (250)
T PRK12939 83 GGLDGLVNNAGITNS 97 (250)
T ss_pred CCCCEEEECCCCCCC
Confidence 369999999998643
No 240
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.67 E-value=79 Score=29.54 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=50.1
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||-..++.+.+ .....|+.+++++...+...+.++..+ .++.++..++.+..++ +.+... ...
T Consensus 13 tG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 83 (239)
T PRK07666 13 TGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-------VKVVIATADVSDYEEVTAAIEQLKN--ELG 83 (239)
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-------CeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 666777777776653 233479999999887766555554432 2677777776655443 332211 013
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 84 ~id~vi~~ag~~~ 96 (239)
T PRK07666 84 SIDILINNAGISK 96 (239)
T ss_pred CccEEEEcCcccc
Confidence 6999999988753
No 241
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=53.41 E-value=57 Score=30.75 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=46.5
Q ss_pred ccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-----cchHHHHHhhhccccc
Q 012954 141 TLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-----FRHIKSVLGQIDENIL 214 (452)
Q Consensus 141 TlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-----F~~i~~~L~~~~~~l~ 214 (452)
|-|.||=..++.+.+- .+..|+++|++++..+...+.+..... .++.++..+ -+++.+++..... .
T Consensus 18 tG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~--~ 89 (247)
T PRK08945 18 TGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG------PQPAIIPLDLLTATPQNYQQLADTIEE--Q 89 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC------CCceEEEecccCCCHHHHHHHHHHHHH--H
Confidence 5556666666555532 233699999999887665555554321 244444433 3344444443321 0
Q ss_pred ccCccEEEEccCCCc
Q 012954 215 RSGVDAILMDLGMSS 229 (452)
Q Consensus 215 ~~~VDGILfDLGvSS 229 (452)
...+|+++..-|++.
T Consensus 90 ~~~id~vi~~Ag~~~ 104 (247)
T PRK08945 90 FGRLDGVLHNAGLLG 104 (247)
T ss_pred hCCCCEEEECCcccC
Confidence 136999999988754
No 242
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=52.40 E-value=13 Score=33.12 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCeEEEE
Q 012954 337 IAVNDELKTLESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 337 I~VN~EL~~L~~~L~~a~~~L~pGGRLvVI 366 (452)
|..|.=-+-|..++..+.++|+|||++++=
T Consensus 14 IHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 14 IHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 678888899999999999999999999874
No 243
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=52.08 E-value=28 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
++.++.++.++..+.++|+|||++++-.=++ ...-+++.|.+
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~ 252 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAA 252 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHh
Confidence 5678889999999999999999998753222 22335555553
No 244
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=52.05 E-value=24 Score=37.43 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCeEEEE--eecchhHHHHHHHHH
Q 012954 347 ESSLHACFDCLAPGGRLGVI--SFHSLEDRIVKQTFL 381 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvVI--SFHSLEDRIVK~~F~ 381 (452)
.++|..+..+|+|||+|++. |++.-|.--|=+.|.
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence 56788899999999999976 455557665554444
No 245
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=51.62 E-value=61 Score=33.78 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=54.3
Q ss_pred CccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHHhhhcc
Q 012954 115 SHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHLNSLLH 183 (452)
Q Consensus 115 ~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL~~~~~ 183 (452)
.|+=-++.+.+..|......-.++|...|-|-+-.-+|+.+|. ...+.--|-++..++..++.+++-+.
T Consensus 117 ~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL 186 (311)
T PF12147_consen 117 VHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL 186 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4777788888888863223346899999999888888888876 23588899999999999998887554
No 246
>PRK14967 putative methyltransferase; Provisional
Probab=50.79 E-value=32 Score=32.89 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEE
Q 012954 344 KTLESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVI 366 (452)
..++.++..+.++|+|||+++++
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 45788999999999999999876
No 247
>PRK09072 short chain dehydrogenase; Provisional
Probab=50.50 E-value=86 Score=29.88 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=48.1
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH---hhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL---GQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L---~~~~~~l~~~ 216 (452)
|-|.||--.+|...+ ..+..|+++|++++.++...+.+ ... .++.++..+..+..++- .... ...
T Consensus 11 tG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-------~~~~~~~~D~~d~~~~~~~~~~~~---~~~ 79 (263)
T PRK09072 11 TGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-------GRHRWVVADLTSEAGREAVLARAR---EMG 79 (263)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-------CceEEEEccCCCHHHHHHHHHHHH---hcC
Confidence 555666666666553 23357999999988776665544 221 25677777777655432 2211 024
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 80 ~id~lv~~ag~~~ 92 (263)
T PRK09072 80 GINVLINNAGVNH 92 (263)
T ss_pred CCCEEEECCCCCC
Confidence 6899999888754
No 248
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=49.81 E-value=9.4 Score=31.15 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhcCCCeE
Q 012954 344 KTLESSLHACFDCLAPGGRL 363 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRL 363 (452)
+.++.+|..+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 67788999999999999986
No 249
>PF14164 YqzH: YqzH-like protein
Probab=49.11 E-value=32 Score=28.01 Aligned_cols=44 Identities=20% Similarity=0.475 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCC--------cchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhC
Q 012954 268 DAEVGRVLREYGEE--------SNWHLLQNKIVQARLRGGLHSTGELVDLIQSVT 314 (452)
Q Consensus 268 e~eL~~Ifr~YGEE--------~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~ 314 (452)
+.-+.+-|+.||.. ..++.+.++|..++.. .+-.||.++|.+++
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~---~~~~Dl~eiVeDvV 58 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNE---EPDEDLHEIVEDVV 58 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHH
Confidence 56788999999876 3456788888887765 34468999998876
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=49.10 E-value=84 Score=32.09 Aligned_cols=81 Identities=25% Similarity=0.298 Sum_probs=52.5
Q ss_pred hHHHHhhccCCC-CCCEEEEEccCC--ChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEcc
Q 012954 121 LGEVLDVFSSSR-TITSFVDCTLGA--AGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAK 197 (452)
Q Consensus 121 l~Evl~~L~~~~-~ggiyVDaTlG~--GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~ 197 (452)
|.-++.+|.. . --.-|+|.=.|- -|+.-.+.++..+..+|+-+|.||.++..++..|..-. ..+..++++
T Consensus 56 l~RaVr~la~-~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------~g~t~~v~a 128 (267)
T PF04672_consen 56 LRRAVRYLAE-EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------RGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHC-TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------TSEEEEEE-
T ss_pred HHHHHHHHHH-hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------CccEEEEeC
Confidence 4556667652 2 224699986663 36777888874444679999999999999999887632 125889999
Q ss_pred CcchHHHHHhh
Q 012954 198 NFRHIKSVLGQ 208 (452)
Q Consensus 198 nF~~i~~~L~~ 208 (452)
+..+...+|..
T Consensus 129 D~r~p~~iL~~ 139 (267)
T PF04672_consen 129 DLRDPEAILAH 139 (267)
T ss_dssp -TT-HHHHHCS
T ss_pred CCCCHHHHhcC
Confidence 99999999984
No 251
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=48.73 E-value=38 Score=33.49 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP 168 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~ 168 (452)
++|=-.+| +|+.+++||-+--|--|+---++.++.|.|+|+|+++
T Consensus 60 indKy~~l---~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 60 INDKYRFL---RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ehhhcccc---CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 33434445 4789999999999999999999986778999999984
No 252
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=48.26 E-value=41 Score=31.74 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhhCCCCcHHHHHHHHHhhC
Q 012954 260 EDILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLIQSVT 314 (452)
Q Consensus 260 adiLN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~~~i~TT~eLa~iI~~~~ 314 (452)
-+-+|.++.++....|..==|-..| |..+...| |+.+..+|.+.+..++
T Consensus 8 l~~~N~l~~~~f~~~l~~~~e~~~W---a~~~~~~R---Pf~s~~~L~~a~~~~~ 56 (166)
T PRK13798 8 LAEFNALPERQAVHALFECCHSTAW---ARRLAAAR---PFADHDALLAAADEAL 56 (166)
T ss_pred HHHHhCCCHHHHHHHHHHHhcChHH---HHHHHHcC---CCCCHHHHHHHHHHHH
Confidence 6789999999999888754444433 34454544 9999999998887765
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=47.65 E-value=1.1e+02 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=41.4
Q ss_pred EEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC-cchH
Q 012954 137 FVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN-FRHI 202 (452)
Q Consensus 137 yVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n-F~~i 202 (452)
+.|+-.--|-=..+++++. ...++||.|+-+..++.|++.++.++. ..++++..++ ++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l 61 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVL 61 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG-
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCccccc
Confidence 3566666664455666553 345799999999999999999998865 3478887766 7765
No 254
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=47.19 E-value=30 Score=36.86 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEeecch---h-HHHHHHHHHh
Q 012954 347 ESSLHACFDCLAPGGRLGVISFHSL---E-DRIVKQTFLS 382 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvVISFHSL---E-DRIVK~~F~~ 382 (452)
...|..+..+|+|||+|+. |-+|+ | +..|..+.++
T Consensus 359 ~~iL~~a~~~LkpGG~lvy-stcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 359 LEILESVAQYLKKGGILVY-STCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred HHHHHHHHHHcCCCCEEEE-EcCCCChhhhHHHHHHHHHh
Confidence 4679999999999999975 33555 5 3466666654
No 255
>PRK07402 precorrin-6B methylase; Provisional
Probab=47.15 E-value=35 Score=31.75 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHH-HHHHHHhh
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRI-VKQTFLSI 383 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRI-VK~~F~~~ 383 (452)
.++.+|+.+..+|+|||++++.+ .++|+.. +.+.+++.
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATA-SSLEGLYAISEGLAQL 158 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe-ecHHHHHHHHHHHHhc
Confidence 35788899999999999988775 4666543 56666554
No 256
>PRK05867 short chain dehydrogenase; Provisional
Probab=47.13 E-value=1.2e+02 Score=28.79 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=47.0
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ ..+.+|+.+|++++.++...+.++..+ .++..+..++.+- .+++.+... ...
T Consensus 15 tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~g 85 (253)
T PRK05867 15 TGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-------GKVVPVCCDVSQHQQVTSMLDQVTA--ELG 85 (253)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------CeEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence 444444444444442 223469999999998877766665432 2566666665544 333433211 023
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++.+-|+..
T Consensus 86 ~id~lv~~ag~~~ 98 (253)
T PRK05867 86 GIDIAVCNAGIIT 98 (253)
T ss_pred CCCEEEECCCCCC
Confidence 6999999999753
No 257
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=46.81 E-value=44 Score=32.58 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=38.5
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
.|.+.++.+. ..+++.+++-=+|.| |....|...+- .|+|+|.-+.|++.+.+
T Consensus 25 ~L~~~~~~l~-~~~~~rvLvPgCG~g-~D~~~La~~G~--~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 25 ALVEYLDSLA-LKPGGRVLVPGCGKG-YDMLWLAEQGH--DVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp HHHHHHHHHT-TSTSEEEEETTTTTS-CHHHHHHHTTE--EEEEEES-HHHHHHHHH
T ss_pred HHHHHHHhcC-CCCCCeEEEeCCCCh-HHHHHHHHCCC--eEEEEecCHHHHHHHHH
Confidence 4556666665 357778888888988 66666666543 69999999999999843
No 258
>PRK06194 hypothetical protein; Provisional
Probab=46.13 E-value=1.9e+02 Score=27.89 Aligned_cols=82 Identities=18% Similarity=0.097 Sum_probs=49.9
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~ 215 (452)
.|=|+||=-.++.+.+ ..+..|+.+|++++.++...+.+...+ .++.++..+..+..+ ++..... ..
T Consensus 11 VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~--~~ 81 (287)
T PRK06194 11 ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-------AEVLGVRTDVSDAAQVEALADAALE--RF 81 (287)
T ss_pred EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 5666666555555542 223469999999888776655554321 257777777765443 3332210 01
Q ss_pred cCccEEEEccCCCcc
Q 012954 216 SGVDAILMDLGMSSM 230 (452)
Q Consensus 216 ~~VDGILfDLGvSS~ 230 (452)
..+|.++-.-|+++.
T Consensus 82 g~id~vi~~Ag~~~~ 96 (287)
T PRK06194 82 GAVHLLFNNAGVGAG 96 (287)
T ss_pred CCCCEEEECCCCCCC
Confidence 358999999998764
No 259
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=46.02 E-value=38 Score=35.87 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=35.4
Q ss_pred hHHHHhhccC-------CCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH
Q 012954 121 LGEVLDVFSS-------SRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP 168 (452)
Q Consensus 121 l~Evl~~L~~-------~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~ 168 (452)
|.|.++.+.+ ..+|..+||.=.+-||-|..++++ +.+|+|+|..+
T Consensus 192 LeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~ 243 (357)
T PRK11760 192 LEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP 243 (357)
T ss_pred HHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence 5666666642 247899999999999999999987 23799999665
No 260
>PRK07677 short chain dehydrogenase; Provisional
Probab=45.98 E-value=1.7e+02 Score=27.65 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=44.1
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc---hHHHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR---HIKSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~---~i~~~L~~~~~~l~~~ 216 (452)
|-|.||=-.++.+.+ ..+..|+++|++++.++...+.+.... .++.++..+.. .+...+.+... ...
T Consensus 7 tG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 77 (252)
T PRK07677 7 TGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-------GQVLTVQMDVRNPEDVQKMVEQIDE--KFG 77 (252)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEecCCCHHHHHHHHHHHHH--HhC
Confidence 444444444444432 123469999999887776666555432 25666655444 44444443311 013
Q ss_pred CccEEEEccCC
Q 012954 217 GVDAILMDLGM 227 (452)
Q Consensus 217 ~VDGILfDLGv 227 (452)
.+|+++.+-|.
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 69999998885
No 261
>PRK08251 short chain dehydrogenase; Provisional
Probab=45.86 E-value=1.6e+02 Score=27.61 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=51.5
Q ss_pred EccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|=|.||=-.++++.+- ...+|+..|++++.++...+.+..... ..+++++..+..+..++ +.+... ..
T Consensus 7 ItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 79 (248)
T PRK08251 7 ITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP-----GIKVAVAALDVNDHDQVFEVFAEFRD--EL 79 (248)
T ss_pred EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----CceEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 46666776677666632 224799999999888766655543211 13677777777665443 332211 12
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+++.+-|++.
T Consensus 80 ~~id~vi~~ag~~~ 93 (248)
T PRK08251 80 GGLDRVIVNAGIGK 93 (248)
T ss_pred CCCCEEEECCCcCC
Confidence 36999999999864
No 262
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.53 E-value=2.1e+02 Score=26.59 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=46.5
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~ 215 (452)
.|=|.||=-..+.+.+ .....|+.+|+++..++.+.+.+...+ .++.+++.+..+. .+.+..... ..
T Consensus 10 ItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 80 (253)
T PRK08217 10 ITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------TEVRGYAANVTDEEDVEATFAQIAE--DF 80 (253)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 3444454444444432 123469999999987776666555432 2566666666543 333443211 01
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+|+..-|+..
T Consensus 81 ~~id~vi~~ag~~~ 94 (253)
T PRK08217 81 GQLNGLINNAGILR 94 (253)
T ss_pred CCCCEEEECCCccC
Confidence 36999999999743
No 263
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=45.42 E-value=1.3e+02 Score=28.15 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=46.0
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||--..+.+.+ .....|+++|++++-.+...+.+.... .++.++..++.+-.++ +++... ...
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 77 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-------GSVIYLVADVTKEDEIADMIAAAAA--EFG 77 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEECCCCCHHHHHHHHHHHHH--hcC
Confidence 334444444544442 223469999999877666555554321 2577777777765433 333211 023
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+|+..-|+++
T Consensus 78 ~~d~vi~~a~~~~ 90 (255)
T TIGR01963 78 GLDILVNNAGIQH 90 (255)
T ss_pred CCCEEEECCCCCC
Confidence 5899998888754
No 264
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=45.13 E-value=24 Score=34.88 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
....+|..+..+|+|||+++|..+..
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 56788999999999999999987743
No 265
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=44.81 E-value=84 Score=33.32 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=72.1
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhccccc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENIL 214 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~ 214 (452)
-.++|+..|.|=-+...+..+++...|++-|+|++|++..+++++-.+.. ..++++ +..+...+|...
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----~~~~~v---~~~DAn~ll~~~----- 118 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----DERIEV---SNMDANVLLYSR----- 118 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----GCCEEE---EES-HHHHHCHS-----
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----CceEEE---ehhhHHHHhhhc-----
Confidence 47999999999999999988777678999999999999999987654321 114444 333444445321
Q ss_pred ccCccEEEEc-cCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhcCChHHHHHHHHHhCCC
Q 012954 215 RSGVDAILMD-LGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNSWPDAEVGRVLREYGEE 281 (452)
Q Consensus 215 ~~~VDGILfD-LGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~~se~eL~~Ifr~YGEE 281 (452)
...+|.|=+| +|-.++=||.+-+.-. .+|-| .+||.|.=--.. .....-|+.||--
T Consensus 119 ~~~fD~IDlDPfGSp~pfldsA~~~v~--~gGll--------~vTaTD~a~L~G-~~~~~~~r~Yg~~ 175 (377)
T PF02005_consen 119 QERFDVIDLDPFGSPAPFLDSALQAVK--DGGLL--------CVTATDTAVLCG-SYPEKCFRKYGAV 175 (377)
T ss_dssp TT-EEEEEE--SS--HHHHHHHHHHEE--EEEEE--------EEEE--HHHHTT-SSHHHHHHHHSSB
T ss_pred cccCCEEEeCCCCCccHhHHHHHHHhh--cCCEE--------EEeccccccccC-CChhHHHHhcCCc
Confidence 2468888777 6777777776533221 12222 345555432111 2334678999974
No 266
>PRK04266 fibrillarin; Provisional
Probab=44.62 E-value=40 Score=32.98 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCCCeEEE
Q 012954 347 ESSLHACFDCLAPGGRLGV 365 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvV 365 (452)
..+|..+..+|+|||+++|
T Consensus 156 ~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 4568888899999999999
No 267
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=44.35 E-value=21 Score=34.95 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=27.3
Q ss_pred ccCCChhHHHHHHh-------CCCCCEEEEEeCCHHHHHHHHH
Q 012954 141 TLGAAGHSSAIIRA-------HPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 141 TlG~GGHS~aIL~~-------~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
-+|.||||.+||+- +.+ ..+++-|-|....+.+..
T Consensus 44 vlGSGGHT~EMlrLl~~l~~~y~~-r~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339|consen 44 VLGSGGHTGEMLRLLEALQDLYSP-RSYIAADTDEMSEQKARS 85 (211)
T ss_pred EEcCCCcHHHHHHHHHHHHhhcCc-eEEEEecCchhhHHHHHh
Confidence 68999999999864 334 457888999888877765
No 268
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=44.18 E-value=27 Score=33.79 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
..+..+..+.++|+|||++.+++|.-
T Consensus 130 ~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 130 MRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 35668888899999999999999964
No 269
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=44.16 E-value=1.4e+02 Score=28.28 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=49.3
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|-|.||=-.++.+.+ ..+..|+.+|++++.++...+.++..+ .++..+..+..+..++ +..... ..
T Consensus 15 ItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 85 (255)
T PRK07523 15 VTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------LSAHALAFDVTDHDAVRAAIDAFEA--EI 85 (255)
T ss_pred EECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------ceEEEEEccCCCHHHHHHHHHHHHH--hc
Confidence 4666666666666653 233479999999988776666665432 2566777777665443 332211 12
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|+++..-|+.
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 3699999887765
No 270
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=44.09 E-value=37 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHH
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTF 380 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F 380 (452)
....+|..+...|+|||++++......+|......+
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~ 174 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL 174 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHH
Confidence 456789999999999999998876666665544443
No 271
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=44.07 E-value=19 Score=33.86 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEe
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVIS 367 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVIS 367 (452)
+..+...++.+.++|+|||++++..
T Consensus 118 ~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 4456677888899999999999773
No 272
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=43.66 E-value=46 Score=33.54 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
++..++|.-+|+|-=|..+.+ .+ ..|+|+|..+.+|+.|+.+-
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr-~G--a~VtgiD~se~~I~~Ak~ha 101 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLAR-LG--ASVTGIDASEKPIEVAKLHA 101 (243)
T ss_pred CCCeEEEecCCccHhhHHHHH-CC--CeeEEecCChHHHHHHHHhh
Confidence 788999999999955554443 33 56999999999999998653
No 273
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=43.64 E-value=51 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=32.8
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL 178 (452)
.+||.=.|.||-+..+-+.- -..++|+|+|+.|.+.-+.+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcc
Confidence 47999999999999988763 246999999999998766543
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=43.57 E-value=46 Score=33.29 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=33.0
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r 177 (452)
.++|.=.|.||-+..+.+. + ...++++|+|+.|++.-+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N 41 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEAN 41 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHh
Confidence 4789999999999998865 3 34689999999999876654
No 275
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=43.39 E-value=6.8 Score=37.87 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchh
Q 012954 336 RIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLE 372 (452)
Q Consensus 336 RI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLE 372 (452)
+|+|+.= ..|+..|+.+.+.|+||||||+ .+=.||
T Consensus 105 aiFIGGg-~~i~~ile~~~~~l~~ggrlV~-naitlE 139 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWERLKPGGRLVA-NAITLE 139 (187)
T ss_pred EEEECCC-CCHHHHHHHHHHHcCcCCeEEE-EeecHH
Confidence 3667777 8899999999999999999874 444444
No 276
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=43.32 E-value=27 Score=34.95 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
+.....|..+.+.|+|||||+|+-+.
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 35567899999999999999999874
No 277
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=42.85 E-value=34 Score=31.21 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred EEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCccCCCCCCCCc
Q 012954 162 IGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGF 239 (452)
Q Consensus 162 igfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS~QLDd~~RGF 239 (452)
.|+|..++.++.|+++....... ...++++++++..++. + ..+.+|+|++.+|+ +.+.|+.+.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~~lp--~-------~~~~fD~v~~~~~l--~~~~d~~~~l 64 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAIDLP--F-------DDCEFDAVTMGYGL--RNVVDRLRAM 64 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechhhCC--C-------CCCCeeEEEecchh--hcCCCHHHHH
Confidence 38999999999998765421100 1236888888876652 1 12469999987765 4455555444
No 278
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=42.68 E-value=74 Score=31.40 Aligned_cols=72 Identities=24% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHH-HhhhccC--CCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccC
Q 012954 152 IRAHPELKLHIGVDVDPSALAKARAH-LNSLLHG--QAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLG 226 (452)
Q Consensus 152 L~~~p~~g~VigfDrD~~Ai~~Ak~r-L~~~~~~--~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLG 226 (452)
|++.+....|+|+|++++.++.|.+. ....... ..-....+-++....+.+.+++.++.. .-+.+++++|.|
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~---~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAP---YLKPGAIVTDVG 79 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHC---GS-TTSEEEE--
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhh---hcCCCcEEEEeC
Confidence 34444445799999999999998542 1000000 000012467788888888888887642 134678999987
No 279
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=42.66 E-value=46 Score=33.38 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
.+..++..+.++|+|||++++..+..-+-..|+..+++
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~ 274 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ 274 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc
Confidence 34567888999999999998876654444445555543
No 280
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=42.66 E-value=22 Score=35.22 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=35.2
Q ss_pred HHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCH
Q 012954 122 GEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDP 168 (452)
Q Consensus 122 ~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~ 168 (452)
.|+|.+.- .+|+.++||.--|+|-.|.-|-..++..|+||++==+.
T Consensus 38 ~E~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 38 GEVLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred cceeEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 36677775 67999999999999966665555578888999985443
No 281
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=42.24 E-value=39 Score=35.81 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
+++..+.|.-+|-||+-..-... ..+.+||+|+-...|+.|++|..+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm 163 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDM 163 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHH
Confidence 46788999999999998887755 2346999999999999999887654
No 282
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=42.18 E-value=49 Score=35.37 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCeEEEEe--ecchhHH-HHHHHHHh
Q 012954 348 SSLHACFDCLAPGGRLGVIS--FHSLEDR-IVKQTFLS 382 (452)
Q Consensus 348 ~~L~~a~~~L~pGGRLvVIS--FHSLEDR-IVK~~F~~ 382 (452)
..|..+..+|+|||+|+.-| ++.-|.. .|..|++.
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 58899999999999998765 5566755 44555543
No 283
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=42.12 E-value=17 Score=31.51 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 346 LESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
...+|..+.++|+|||++++.+...
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 6788889999999999988877653
No 284
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=41.48 E-value=29 Score=34.62 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecchhH
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSLED 373 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLED 373 (452)
+.+...|..+.++|+|||+++++.+.+-+|
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~ 229 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTED 229 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 467788999999999999999988776555
No 285
>PRK05866 short chain dehydrogenase; Provisional
Probab=41.41 E-value=1.6e+02 Score=29.22 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=49.8
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~ 215 (452)
.|-|+||=-.++.+.+ ..+..|+.+|++++.++...+.+...+ .++.++..+..+ +.++++.... ..
T Consensus 45 ItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-------~~~~~~~~Dl~d~~~v~~~~~~~~~--~~ 115 (293)
T PRK05866 45 LTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-------GDAMAVPCDLSDLDAVDALVADVEK--RI 115 (293)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 5667777777777663 233479999999988776665554432 145555555444 4444443211 12
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|.++..-|+.
T Consensus 116 g~id~li~~AG~~ 128 (293)
T PRK05866 116 GGVDILINNAGRS 128 (293)
T ss_pred CCCCEEEECCCCC
Confidence 3699999999874
No 286
>PRK06197 short chain dehydrogenase; Provisional
Probab=41.19 E-value=3.1e+02 Score=26.99 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=52.0
Q ss_pred CCEEEEEccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhh
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQI 209 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~ 209 (452)
+.+++ .|=|.||=-.++.+.+- .+.+|+.++++++..+.+.+.+..... ..++.++..+..+..++ +.+.
T Consensus 16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP-----GADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCHHHHHHHHHHH
Confidence 34444 56666666566655432 233689999998877766555543211 12566777777665543 3332
Q ss_pred cccccccCccEEEEccCCCc
Q 012954 210 DENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 210 ~~~l~~~~VDGILfDLGvSS 229 (452)
.. ....+|+++.+-|+..
T Consensus 90 ~~--~~~~iD~li~nAg~~~ 107 (306)
T PRK06197 90 RA--AYPRIDLLINNAGVMY 107 (306)
T ss_pred Hh--hCCCCCEEEECCcccc
Confidence 11 0236999999999754
No 287
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=41.05 E-value=33 Score=33.35 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=27.1
Q ss_pred HhhHHHHHHHHHHHHHhhc--CCCeEEEEeec
Q 012954 340 NDELKTLESSLHACFDCLA--PGGRLGVISFH 369 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~--pGGRLvVISFH 369 (452)
+.+|+.+.++|..+++.|. ++-|+++|||-
T Consensus 19 ~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~ 50 (239)
T cd01468 19 EGLLQALKESLLASLDLLPGDPRARVGLITYD 50 (239)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Confidence 4689999999999999998 99999999994
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.92 E-value=15 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCeEEEEeecc
Q 012954 349 SLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 349 ~L~~a~~~L~pGGRLvVISFHS 370 (452)
.++.+.++|++||+++++.+++
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 4556667788888888888776
No 289
>PLN02244 tocopherol O-methyltransferase
Probab=40.83 E-value=27 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeec
Q 012954 346 LESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
...+|..+..+|+|||+++|.++.
T Consensus 202 ~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 202 KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEec
Confidence 457888889999999999999863
No 290
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=40.79 E-value=45 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHH
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRI 375 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRI 375 (452)
.+...|..+..+|+|||+++++.+..-+...
T Consensus 136 ~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~ 166 (239)
T PRK00216 136 DIDKALREMYRVLKPGGRLVILEFSKPTNPP 166 (239)
T ss_pred CHHHHHHHHHHhccCCcEEEEEEecCCCchH
Confidence 4667888999999999999999887655543
No 291
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=40.39 E-value=48 Score=33.71 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=34.5
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r 177 (452)
++.+|.-.|+| -+..+++.+.+ .|||.|..+..|+.|++.
T Consensus 35 ~~a~DvG~G~G-qa~~~iae~~k--~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAEHYK--EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred ceEEEeccCCC-cchHHHHHhhh--hheeecCCHHHHHHhhcC
Confidence 49999999999 88888887765 389999999999988764
No 292
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=40.31 E-value=49 Score=30.99 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHH
Q 012954 347 ESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFL 381 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~ 381 (452)
+.+|..+..+|+|||+|.+.|-+----..+...|.
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 67888899999999999999977543333334443
No 293
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=60 Score=32.78 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSA 170 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~A 170 (452)
|.+.++.+...-+|.+++|.-.-.||-|.-+|++- ..+|||+|.-..-
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Q 114 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQ 114 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCc
Confidence 77788888754578999999999999999999873 3479999987543
No 294
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=39.87 E-value=1.6e+02 Score=28.07 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=50.8
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccc
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDEN 212 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~ 212 (452)
++..+|=|-|.+...-|...+ .+|+.+|++++.++...+.+...+ .++.++..+..+..++ +.+...
T Consensus 14 lItGa~~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~- 83 (265)
T PRK07097 14 LITGASYGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYRELG-------IEAHGYVCDVTDEDGVQAMVSQIEK- 83 (265)
T ss_pred EEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHHHHH-
Confidence 344555555555554444433 468899999988877766665432 2566677776655543 332211
Q ss_pred ccccCccEEEEccCCCc
Q 012954 213 ILRSGVDAILMDLGMSS 229 (452)
Q Consensus 213 l~~~~VDGILfDLGvSS 229 (452)
....+|+++..-|+++
T Consensus 84 -~~~~id~li~~ag~~~ 99 (265)
T PRK07097 84 -EVGVIDILVNNAGIIK 99 (265)
T ss_pred -hCCCCCEEEECCCCCC
Confidence 1236999999999754
No 295
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=39.80 E-value=36 Score=33.39 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=37.7
Q ss_pred cchHHHHhhccCCCCCCEEEEEccCCChhHHH---HHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEE
Q 012954 119 VMLGEVLDVFSSSRTITSFVDCTLGAAGHSSA---IIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTF 195 (452)
Q Consensus 119 VLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~a---IL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li 195 (452)
+..+|+|--+. | .++|-+=.=.||=... +|+.++..++|+|+|+|....... .++.... ..|++++
T Consensus 22 ~~~qeli~~~k---P-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~-----~~rI~~i 90 (206)
T PF04989_consen 22 VAYQELIWELK---P-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM-----SPRITFI 90 (206)
T ss_dssp HHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEE
T ss_pred HHHHHHHHHhC---C-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc-----cCceEEE
Confidence 46789998886 3 4777766556665443 456676668999999986655432 1222111 1367777
Q ss_pred ccCcchHH
Q 012954 196 AKNFRHIK 203 (452)
Q Consensus 196 ~~nF~~i~ 203 (452)
.++=...+
T Consensus 91 ~Gds~d~~ 98 (206)
T PF04989_consen 91 QGDSIDPE 98 (206)
T ss_dssp ES-SSSTH
T ss_pred ECCCCCHH
Confidence 76655443
No 296
>PRK05599 hypothetical protein; Provisional
Probab=39.71 E-value=1.6e+02 Score=27.96 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=49.6
Q ss_pred ccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhcccccccC
Q 012954 141 TLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILRSG 217 (452)
Q Consensus 141 TlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~~~ 217 (452)
|=|.+|=-.++.+.+....+|+..+++++.++...+.+++.+. .++..+..+..+ +.+.+.+... ....
T Consensus 6 tGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~ 77 (246)
T PRK05599 6 LGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA------TSVHVLSFDAQDLDTHRELVKQTQE--LAGE 77 (246)
T ss_pred EeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC------CceEEEEcccCCHHHHHHHHHHHHH--hcCC
Confidence 4455555566666643456799999999988877666655421 235555555444 4444443211 1246
Q ss_pred ccEEEEccCCCc
Q 012954 218 VDAILMDLGMSS 229 (452)
Q Consensus 218 VDGILfDLGvSS 229 (452)
+|.++.+-|+..
T Consensus 78 id~lv~nag~~~ 89 (246)
T PRK05599 78 ISLAVVAFGILG 89 (246)
T ss_pred CCEEEEecCcCC
Confidence 999999988753
No 297
>PF11055 Gsf2: Glucose signalling factor 2; InterPro: IPR022757 This entry represents fungal Glucose singalling factor 2. Gsf2 is localised to the ER and functions to promote the secretion of certain hexose transporters [].
Probab=39.62 E-value=77 Score=33.75 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=61.7
Q ss_pred EEEccCCCccCCCCCCCCcccCCCCCCcccCCCCCCCCHHHHHhc----CChH---HHHHHHHHhCCCcch--HHHHHHH
Q 012954 221 ILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAEDILNS----WPDA---EVGRVLREYGEESNW--HLLQNKI 291 (452)
Q Consensus 221 ILfDLGvSS~QLDd~~RGFSf~~dgPLDMRMD~~~~~tAadiLN~----~se~---eL~~Ifr~YGEE~~A--~rIA~aI 291 (452)
.+.++|| ||.+. -|| +-|||=|.. .-|-.++-+. +|++ +|..-|+++=|.... .+++.+|
T Consensus 271 ~~~~~Gv---~L~~G-EGf----qTPL~~r~t---~~tf~~~e~~~KF~Ls~eYf~~L~~~~k~ni~~~~gdi~~~n~~I 339 (377)
T PF11055_consen 271 KAANPGV---QLGEG-EGF----QTPLDERFT---LSTFKTMEEEGKFILSEEYFAELENNFKENIEKCEGDIGKMNEEI 339 (377)
T ss_pred HHhcCCc---cccCC-CCC----CCccccccc---cchHHHHHhcCcEEEcHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4678998 77754 476 579987743 2234444443 4555 788889988887776 8999999
Q ss_pred HHHHhhCCCCcHHHHHHHHHhh
Q 012954 292 VQARLRGGLHSTGELVDLIQSV 313 (452)
Q Consensus 292 v~~R~~~~i~TT~eLa~iI~~~ 313 (452)
-+.|+-|.+++...+..+|+.-
T Consensus 340 k~FRRyGl~e~~~~i~~iV~~R 361 (377)
T PF11055_consen 340 KRFRRYGLFESNEKIKKIVELR 361 (377)
T ss_pred HHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999743
No 298
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=39.56 E-value=28 Score=33.89 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhHHHHH
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLEDRIVK 377 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK 377 (452)
....+|..+.++|+|||+|+|+ |++....+.+
T Consensus 127 ~~~~~l~~~~~~LkpgG~l~i~-~~n~~~~~~~ 158 (255)
T PRK11036 127 DPKSVLQTLWSVLRPGGALSLM-FYNANGLLMH 158 (255)
T ss_pred CHHHHHHHHHHHcCCCeEEEEE-EECccHHHHH
Confidence 3457788899999999999876 3333333333
No 299
>PRK07904 short chain dehydrogenase; Provisional
Probab=39.33 E-value=93 Score=29.93 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=45.4
Q ss_pred ccCCChhHHHHHHhC-CCC-CEEEEEeCCHHH-HHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhccccc
Q 012954 141 TLGAAGHSSAIIRAH-PEL-KLHIGVDVDPSA-LAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENIL 214 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~-g~VigfDrD~~A-i~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~ 214 (452)
|=|.||=-.++.+++ ... .+|+.++++++. ++.+.+.++..+. .+++++..+..+ +.+.+.+.- .
T Consensus 14 tGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~------~~v~~~~~D~~~~~~~~~~~~~~~---~ 84 (253)
T PRK07904 14 LGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA------SSVEVIDFDALDTDSHPKVIDAAF---A 84 (253)
T ss_pred EcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC------CceEEEEecCCChHHHHHHHHHHH---h
Confidence 555555556666553 221 379999999875 6655444544321 256666655544 333343321 1
Q ss_pred ccCccEEEEccCCC
Q 012954 215 RSGVDAILMDLGMS 228 (452)
Q Consensus 215 ~~~VDGILfDLGvS 228 (452)
...+|.++.+.|+.
T Consensus 85 ~g~id~li~~ag~~ 98 (253)
T PRK07904 85 GGDVDVAIVAFGLL 98 (253)
T ss_pred cCCCCEEEEeeecC
Confidence 13699999999984
No 300
>PRK08317 hypothetical protein; Provisional
Probab=39.15 E-value=40 Score=31.16 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEee-------cchhHHHHHHHHHhh
Q 012954 346 LESSLHACFDCLAPGGRLGVISF-------HSLEDRIVKQTFLSI 383 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISF-------HSLEDRIVK~~F~~~ 383 (452)
...+|..+.++|+|||++++..+ ++..+..+++++..+
T Consensus 103 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (241)
T PRK08317 103 PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW 147 (241)
T ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH
Confidence 46678888999999999998653 343344455444433
No 301
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=38.84 E-value=1.8e+02 Score=27.88 Aligned_cols=81 Identities=14% Similarity=-0.004 Sum_probs=50.8
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|=|.||=-.++...+ ..+..|+.+|++++..+...+.+..++ .++.++..+..+..++ +.+... ..
T Consensus 15 VtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 85 (278)
T PRK08277 15 ITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG-------GEALAVKADVLDKESLEQARQQILE--DF 85 (278)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 4666666667776664 233469999999887766655555432 2577777777654433 333210 02
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+++..-|+..
T Consensus 86 g~id~li~~ag~~~ 99 (278)
T PRK08277 86 GPCDILINGAGGNH 99 (278)
T ss_pred CCCCEEEECCCCCC
Confidence 36999999999754
No 302
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=38.80 E-value=29 Score=33.91 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEeecch
Q 012954 347 ESSLHACFDCLAPGGRLGVISFHSL 371 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvVISFHSL 371 (452)
...|..+.++|+|||++++..+...
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEEEeecc
Confidence 5678888999999999999876543
No 303
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=38.75 E-value=30 Score=33.37 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
.+..+|..+.++|+|||++++.+|..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 45788888999999999999998765
No 304
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=38.26 E-value=59 Score=29.95 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCCCeEEE
Q 012954 346 LESSLHACFDCLAPGGRLGV 365 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvV 365 (452)
+...+..+.++|+|||++++
T Consensus 110 ~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 110 LTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 45667888999999999965
No 305
>PRK07062 short chain dehydrogenase; Provisional
Probab=38.18 E-value=2.1e+02 Score=27.25 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=49.5
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~ 215 (452)
.|=|.||=-.++.+.+ ..+.+|+.++++++.++.+.+.+..... ..++..+..+..+.++ ++.+... ..
T Consensus 13 ItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~--~~ 85 (265)
T PRK07062 13 VTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----GARLLAARCDVLDEADVAAFAAAVEA--RF 85 (265)
T ss_pred EeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----CceEEEEEecCCCHHHHHHHHHHHHH--hc
Confidence 3666666666666653 2345699999999888777665543211 1256666665555443 3433211 12
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|+++.+-|+.
T Consensus 86 g~id~li~~Ag~~ 98 (265)
T PRK07062 86 GGVDMLVNNAGQG 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 3699999999874
No 306
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=37.93 E-value=27 Score=31.04 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.4
Q ss_pred HhcCChHHHHHHHHHhCCCcchHHHHHHHHHHHhh-CCCCcHHHHHH
Q 012954 263 LNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLR-GGLHSTGELVD 308 (452)
Q Consensus 263 LN~~se~eL~~Ifr~YGEE~~A~rIA~aIv~~R~~-~~i~TT~eLa~ 308 (452)
||+.+.++|..|- - -....|++|+++|+. +++.+..||.+
T Consensus 62 iNtA~~~eL~~lp-G-----IG~~~A~~Ii~~R~~~g~f~s~eeL~~ 102 (120)
T TIGR01259 62 INAASLEELQALP-G-----IGPAKAKAIIEYREENGAFKSVDDLTK 102 (120)
T ss_pred CCcCCHHHHhcCC-C-----CCHHHHHHHHHHHHhcCCcCCHHHHHc
Confidence 7899999998753 2 234789999999975 68988888854
No 307
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=37.86 E-value=44 Score=33.59 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 342 ELKTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 342 EL~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
|++.|.+.|..+++.|-++.++++|||-
T Consensus 18 el~~l~~sl~~~L~~lP~~a~VGlITfd 45 (267)
T cd01478 18 ELDALKESLIMSLSLLPPNALVGLITFG 45 (267)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 6889999999999999999999999974
No 308
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=37.36 E-value=43 Score=33.72 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecchhHHH
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSLEDRI 375 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRI 375 (452)
.++..++..+..+|+|||+++|=++-..+..-
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~ 174 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPY 174 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccc
Confidence 35677788889999999999987776655443
No 309
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=37.25 E-value=69 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
.+.+..+..+++.+..+|+|||++++..-.+-+ .-++++|.+
T Consensus 190 ~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~-~~~~~~l~~ 231 (251)
T TIGR03534 190 EDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG-EAVRALFEA 231 (251)
T ss_pred CcHHHHHHHHHHHHHHhcccCCEEEEEECccHH-HHHHHHHHh
Confidence 567788889999999999999998875422222 224445543
No 310
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=37.22 E-value=95 Score=33.71 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCEEEEEccCCChhHHHHHHhC---CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhc
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAH---PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQID 210 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~---p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~ 210 (452)
+.+++|.=.|.|-=+.+.|+.. ....+|||++..+.|+...+++++..+- ..++++++++-+++. .
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~-----l- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVE-----L- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSC-----H-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCC-----C-
Confidence 5689999999998877777653 3345799999999999887776554332 248999999887652 1
Q ss_pred ccccccCccEEE
Q 012954 211 ENILRSGVDAIL 222 (452)
Q Consensus 211 ~~l~~~~VDGIL 222 (452)
..+||.|+
T Consensus 256 ----pekvDIIV 263 (448)
T PF05185_consen 256 ----PEKVDIIV 263 (448)
T ss_dssp ----SS-EEEEE
T ss_pred ----CCceeEEE
Confidence 23688776
No 311
>PRK08339 short chain dehydrogenase; Provisional
Probab=37.10 E-value=1.9e+02 Score=27.92 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=48.7
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~ 215 (452)
.|-|.||=-.++.+.+ ..+.+|+.+|++++.++.+.+.+..... .++..+..+..+ +..++.+.. ..
T Consensus 13 ItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~i~~~~~~~~---~~ 83 (263)
T PRK08339 13 TTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESN------VDVSYIVADLTKREDLERTVKELK---NI 83 (263)
T ss_pred EeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC------CceEEEEecCCCHHHHHHHHHHHH---hh
Confidence 4666666666666663 2345799999999888776665543211 245666655554 444444331 12
Q ss_pred cCccEEEEccCC
Q 012954 216 SGVDAILMDLGM 227 (452)
Q Consensus 216 ~~VDGILfDLGv 227 (452)
..+|.++.+-|+
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 469999988885
No 312
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=36.85 E-value=50 Score=30.68 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchh
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLE 372 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLE 372 (452)
.+...|..+..+|+|||++++.+|-...
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 3567899999999999999998875543
No 313
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=36.72 E-value=93 Score=30.99 Aligned_cols=51 Identities=27% Similarity=0.364 Sum_probs=38.7
Q ss_pred cHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 302 STGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 302 TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
+|.|+++++.+. -.++++| |=.++.+|.++++.+.+.|+.||||.++--=+
T Consensus 9 ~~~~~~~~~~~~--------------~~~~~~a----v~~~l~~I~~av~~~~~~l~~ggrl~~~GaGt 59 (257)
T cd05007 9 STLEILRLLNEE--------------DKKVAAA----VEAALPQIARAVDAAAERLRAGGRLIYVGAGT 59 (257)
T ss_pred CHHHHHHHHHHH--------------HHHHHHH----HHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcH
Confidence 577777777543 2455666 44678899999999999999999998886543
No 314
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=36.71 E-value=1.3e+02 Score=30.43 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcc
Q 012954 132 RTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDE 211 (452)
Q Consensus 132 ~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~ 211 (452)
..|+.++..-||.|==+++|= ..++..+ +-+..-|+.++.-++ .+-. .+.++.++.+...+...-|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQ-e~~p~~H-~IiE~hp~V~krmr~----~gw~---ek~nViil~g~WeDvl~~L~---- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQ-EAPPDEH-WIIEAHPDVLKRMRD----WGWR---EKENVIILEGRWEDVLNTLP---- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHh-hcCCcce-EEEecCHHHHHHHHh----cccc---cccceEEEecchHhhhcccc----
Confidence 368999999999995555544 4555444 678999999876543 2211 14589888888876543332
Q ss_pred cccccCccEEEEcc
Q 012954 212 NILRSGVDAILMDL 225 (452)
Q Consensus 212 ~l~~~~VDGILfDL 225 (452)
...+|||++|-
T Consensus 167 ---d~~FDGI~yDT 177 (271)
T KOG1709|consen 167 ---DKHFDGIYYDT 177 (271)
T ss_pred ---ccCcceeEeec
Confidence 24699999994
No 315
>PRK04457 spermidine synthase; Provisional
Probab=36.68 E-value=40 Score=33.51 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEeecc
Q 012954 347 ESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 347 ~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
..++..+.++|+|||+++|-.+++
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCC
Confidence 578888999999999999854433
No 316
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=36.36 E-value=38 Score=31.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeec
Q 012954 346 LESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
....|..+.++|+|||++++..+.
T Consensus 83 ~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 83 KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 578889999999999999998763
No 317
>PRK08643 acetoin reductase; Validated
Probab=35.65 E-value=2.6e+02 Score=26.36 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=47.5
Q ss_pred EEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 139 DCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 139 DaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
-+|=|-|.|....|.+.+ ..|+.+|++++..+...+.+...+ .++.++..+..+.+.+ +.+... ..
T Consensus 9 Gas~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 77 (256)
T PRK08643 9 GAGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAADKLSKDG-------GKAIAVKADVSDRDQVFAAVRQVVD--TF 77 (256)
T ss_pred CCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 344445555555554433 469999999887776666555432 2566677777665443 333211 11
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
.++|+++.+-|+.
T Consensus 78 ~~id~vi~~ag~~ 90 (256)
T PRK08643 78 GDLNVVVNNAGVA 90 (256)
T ss_pred CCCCEEEECCCCC
Confidence 3699999998864
No 318
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=35.38 E-value=51 Score=36.01 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=31.2
Q ss_pred hHHHHH-HHHHHHHHhhcCCCeEEEE--eecchhHHHHHHHHHh
Q 012954 342 ELKTLE-SSLHACFDCLAPGGRLGVI--SFHSLEDRIVKQTFLS 382 (452)
Q Consensus 342 EL~~L~-~~L~~a~~~L~pGGRLvVI--SFHSLEDRIVK~~F~~ 382 (452)
++..|+ +.|..|.++|+|||+||-. ||+..|+.-|=++|.+
T Consensus 216 ~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~ 259 (470)
T PRK11933 216 EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (470)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 566665 4667789999999999644 5777999888777754
No 319
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=35.23 E-value=47 Score=30.98 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=57.9
Q ss_pred ccccchhccccccCCccCCchhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEE
Q 012954 85 GVGMGLVKEKRRTRSNKDYDYESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGV 164 (452)
Q Consensus 85 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~Vigf 164 (452)
|+.|+-+++ =|+++.+|=++.+-.++...+.||++.-....=+ .....+.||.|-..-+ +.....+--|
T Consensus 41 q~e~LD~~L--Wt~~~~sFiPH~~~~e~~~~~qPIli~~~~~~pn-~~~~~~lInl~d~~~~--------~~~~~~~~v~ 109 (144)
T COG2927 41 QAEALDEHL--WTFSAESFIPHNLAGEPPPAGQPILIAWPGGNPN-SARVDLLINLADEFPD--------FAYEFVTRVF 109 (144)
T ss_pred HHHHHHHhh--hccchhcccCCccCCCCCCCCCCEEEEcCCCCCC-CCceeEEEeccccCCC--------ccceEEEEEe
Confidence 334444443 4899999999988888888999998765433322 1133689998876552 2222226678
Q ss_pred eC--CHHH-HHHHHHHHhhhc
Q 012954 165 DV--DPSA-LAKARAHLNSLL 182 (452)
Q Consensus 165 Dr--D~~A-i~~Ak~rL~~~~ 182 (452)
|. |.++ ++.|+++.+.|-
T Consensus 110 d~V~d~~~~~~~AR~r~k~yr 130 (144)
T COG2927 110 DFVPDEEALLQLARERWKAYR 130 (144)
T ss_pred eccCcCHHHHHHHHHHHHHHH
Confidence 85 5544 999999988874
No 320
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=35.02 E-value=45 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCCeEEEEeecchhHHHHHHHH
Q 012954 348 SSLHACFDCLAPGGRLGVISFHSLEDRIVKQTF 380 (452)
Q Consensus 348 ~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F 380 (452)
--+....++|+|||+++|-|-.--+|.+|++|=
T Consensus 162 ~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred eehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 345667789999999999999999999999873
No 321
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=34.89 E-value=50 Score=30.99 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=25.6
Q ss_pred ccCCChhHHHHHHh---C----CCCCEEEEEeCCHHHHHHHHH
Q 012954 141 TLGAAGHSSAIIRA---H----PELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 141 TlG~GGHS~aIL~~---~----p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
-+|.|||+.+|+.- + .....++.-+-|....+.+++
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~ 46 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQ 46 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHH
Confidence 37999999999875 3 223356777888877776654
No 322
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.73 E-value=2.3e+02 Score=26.51 Aligned_cols=80 Identities=23% Similarity=0.154 Sum_probs=49.6
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ .....|+++|++++..+...+.++..+ .+++++..++.+..++ ++.... ...
T Consensus 10 tG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 80 (258)
T PRK12429 10 TGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-------GKAIGVAMDVTDEEAINAGIDYAVE--TFG 80 (258)
T ss_pred ECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 445555555555552 223469999999988877666565432 2677788888776554 222210 113
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 81 ~~d~vi~~a~~~~ 93 (258)
T PRK12429 81 GVDILVNNAGIQH 93 (258)
T ss_pred CCCEEEECCCCCC
Confidence 6999999988754
No 323
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=34.73 E-value=58 Score=34.62 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEe--ecchhHHHHHHHHH
Q 012954 346 LESSLHACFDCLAPGGRLGVIS--FHSLEDRIVKQTFL 381 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVIS--FHSLEDRIVK~~F~ 381 (452)
.+..|..+..+|+|||+++..| ++..|..-|=..|.
T Consensus 351 q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l 388 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence 3578889999999999999764 55556554444443
No 324
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=34.14 E-value=38 Score=34.09 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHhhcCCCeEEEEee
Q 012954 341 DELKTLESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 341 ~EL~~L~~~L~~a~~~L~pGGRLvVISF 368 (452)
.+--.|+..+..|..+|+|||++++|.=
T Consensus 144 e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 144 EITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred hhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 3445588999999999999999998854
No 325
>PRK08263 short chain dehydrogenase; Provisional
Probab=34.03 E-value=2e+02 Score=27.68 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=44.9
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|=|.||--.++.+.+ .....|+++|++++.++...+.+ . .++.++..++.+..+ .+..... ...
T Consensus 9 tGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 76 (275)
T PRK08263 9 TGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G-------DRLLPLALDVTDRAAVFAAVETAVE--HFG 76 (275)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c-------CCeeEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 445565556666553 22346999999988776544322 1 145556666655443 3333210 123
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 77 ~~d~vi~~ag~~~ 89 (275)
T PRK08263 77 RLDIVVNNAGYGL 89 (275)
T ss_pred CCCEEEECCCCcc
Confidence 6999999999864
No 326
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.67 E-value=31 Score=35.07 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=49.8
Q ss_pred hhhhhhcCCCCccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 105 YESIIQQQQSSHIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 105 ~~~~~~~~~~~H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
|+.+-...-.+-+|-+|.|+|.-+. ..+=..++|.-+|.|=--.+|=... .++-|+|+...+++.|.+
T Consensus 98 Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 98 FDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHh
Confidence 4444556677889999999999997 3455789999999983333332222 247899999999998865
No 327
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=33.56 E-value=69 Score=33.36 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEEeecch-hHHHHHHHHHh
Q 012954 342 ELKTLESSLHACFDCLAPGGRLGVISFHSL-EDRIVKQTFLS 382 (452)
Q Consensus 342 EL~~L~~~L~~a~~~L~pGGRLvVISFHSL-EDRIVK~~F~~ 382 (452)
.....+.++..+.++|+|||+|.|+.-.-| -..++++.|..
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~ 319 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS 319 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC
Confidence 356778999999999999999988764333 12456666654
No 328
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=32.83 E-value=3e+02 Score=25.57 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=39.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccccCccEEEEccCCCc
Q 012954 159 KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 159 g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
-.|+.+|++.+......+.+...+ .++.++..+..+..+ .+.+... ....+|+++...|++.
T Consensus 28 ~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~d~vi~~ag~~~ 92 (250)
T TIGR03206 28 AKVAVFDLNREAAEKVAADIRAKG-------GNAQAFACDITDRDSVDTAVAAAEQ--ALGPVDVLVNNAGWDK 92 (250)
T ss_pred CEEEEecCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHHHHHH--HcCCCCEEEECCCCCC
Confidence 368999999987776665554432 256677776665443 3333211 0136999999999864
No 329
>PRK06181 short chain dehydrogenase; Provisional
Probab=32.80 E-value=2.6e+02 Score=26.47 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=46.4
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||=..++.+.+ .....|+++|+++...+...+.+...+ .++.++..+..+..++ +.+... ...
T Consensus 7 tGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 77 (263)
T PRK06181 7 TGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-------GEALVVPTDVSDAEACERLIEAAVA--RFG 77 (263)
T ss_pred ecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 445555555554442 223479999999887766555554432 2566666666554443 333211 013
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 78 ~id~vi~~ag~~~ 90 (263)
T PRK06181 78 GIDILVNNAGITM 90 (263)
T ss_pred CCCEEEECCCccc
Confidence 6999999988754
No 330
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=32.59 E-value=74 Score=30.98 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEe
Q 012954 345 TLESSLHACFDCLAPGGRLGVIS 367 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVIS 367 (452)
....+|..+.+.|+|||++++..
T Consensus 142 ~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 142 ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEE
Confidence 45788999999999999999976
No 331
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=32.50 E-value=1.9e+02 Score=29.83 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=21.9
Q ss_pred ccEEEEccCCCccCCCCCCCCcccCCCCCC
Q 012954 218 VDAILMDLGMSSMQVNNPERGFSVLGDGPL 247 (452)
Q Consensus 218 VDGILfDLGvSS~QLDd~~RGFSf~~dgPL 247 (452)
.+.-++|.|.|- =+.-.+|||||+--||=
T Consensus 111 kgi~flD~GTSG-G~~G~~~G~~lMiGG~~ 139 (300)
T COG1023 111 KGIHFLDVGTSG-GVWGAERGYCLMIGGDE 139 (300)
T ss_pred cCCeEEeccCCC-CchhhhcCceEEecCcH
Confidence 344678888865 56778999999987763
No 332
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.43 E-value=3.3e+02 Score=25.65 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=36.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---HhhhcccccccCccEEEEccCCCc
Q 012954 160 LHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 160 ~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
+|+.+|++++......+.+...+ .++.++..++.+.+.+ +..... ....+|+++..-|++.
T Consensus 33 ~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~g~id~li~~ag~~~ 96 (260)
T PRK06198 33 GLVICGRNAEKGEAQAAELEALG-------AKAVFVQADLSDVEDCRRVVAAADE--AFGRLDALVNAAGLTD 96 (260)
T ss_pred eEEEEcCCHHHHHHHHHHHHhcC-------CeEEEEEccCCCHHHHHHHHHHHHH--HhCCCCEEEECCCcCC
Confidence 39999999877665444443321 2566677777664433 332211 0136999999998754
No 333
>PRK06949 short chain dehydrogenase; Provisional
Probab=32.41 E-value=2.7e+02 Score=26.13 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=45.5
Q ss_pred ccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+- ...+|++++++++.++...+.+.... .+++++..+..+..+ .+.+... ...
T Consensus 15 tGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 85 (258)
T PRK06949 15 TGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-------GAAHVVSLDVTDYQSIKAAVAHAET--EAG 85 (258)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEecCCCHHHHHHHHHHHHH--hcC
Confidence 4444444444444421 22369999999988776665554321 246666666654433 3333211 123
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|++.
T Consensus 86 ~~d~li~~ag~~~ 98 (258)
T PRK06949 86 TIDILVNNSGVST 98 (258)
T ss_pred CCCEEEECCCCCC
Confidence 6999999988754
No 334
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=32.38 E-value=89 Score=33.31 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEE--eecchhHH-HHHHHHHhh
Q 012954 346 LESSLHACFDCLAPGGRLGVI--SFHSLEDR-IVKQTFLSI 383 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVI--SFHSLEDR-IVK~~F~~~ 383 (452)
..+.|..+..+|+|||+|+.. |+|.-|.. .|..|++++
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 367888999999999999876 46666744 566666553
No 335
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=32.11 E-value=3e+02 Score=25.52 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=44.9
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|-|.||=-.++...+ .....|+++++++..+....+.+...+ .++.++..+..+...+ +.+... ...
T Consensus 12 tGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 82 (251)
T PRK12826 12 TGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-------GKARARQVDVRDRAALKAAVAAGVE--DFG 82 (251)
T ss_pred cCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHHHH--HhC
Confidence 444444444444332 122469999999877766555554432 2577777777765443 222210 013
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+|+..-|+.
T Consensus 83 ~~d~vi~~ag~~ 94 (251)
T PRK12826 83 RLDILVANAGIF 94 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999888864
No 336
>PRK07814 short chain dehydrogenase; Provisional
Probab=31.82 E-value=2.6e+02 Score=26.74 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=44.4
Q ss_pred ccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccccC
Q 012954 141 TLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRSG 217 (452)
Q Consensus 141 TlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~~ 217 (452)
|=|-|.|....|.+.+ ..|+++|++++.++...+.+...+ .+++++..+..+.++ ++.+... ....
T Consensus 19 sggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 87 (263)
T PRK07814 19 GRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIRAAG-------RRAHVVAADLAHPEATAGLAGQAVE--AFGR 87 (263)
T ss_pred CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 3344445444444333 479999999988776655554322 256666666555443 3333211 0136
Q ss_pred ccEEEEccCCC
Q 012954 218 VDAILMDLGMS 228 (452)
Q Consensus 218 VDGILfDLGvS 228 (452)
+|+++-.-|+.
T Consensus 88 id~vi~~Ag~~ 98 (263)
T PRK07814 88 LDIVVNNVGGT 98 (263)
T ss_pred CCEEEECCCCC
Confidence 99999888764
No 337
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=31.70 E-value=58 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 012954 284 WHLLQNKIVQARLRGGLHSTGELVDLI 310 (452)
Q Consensus 284 A~rIA~aIv~~R~~~~i~TT~eLa~iI 310 (452)
....|..|+++|+.+|+++-.||..-+
T Consensus 36 g~~~a~~I~~~R~~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 36 GEEVAEKIVEERENGPFKSLEDFIQRL 62 (90)
T ss_dssp -HHHHHHHHHHHHCSS-SSHHHHHHHS
T ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHH
Confidence 356899999999999999888877655
No 338
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=31.69 E-value=2.3e+02 Score=32.00 Aligned_cols=83 Identities=7% Similarity=-0.021 Sum_probs=48.5
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccC--CCCCCceEEEEccCcchHHHHHhhhcccccccC
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHG--QAHPHLKTHTFAKNFRHIKSVLGQIDENILRSG 217 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~--~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~ 217 (452)
|-|.||=-.++++.+ ..+..|++++++.+.++...+.+...... ......++.++..++.+.+.+...+ .+
T Consensus 86 TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL------gg 159 (576)
T PLN03209 86 AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL------GN 159 (576)
T ss_pred ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh------cC
Confidence 444454444444442 23346999999988776544433221100 0000135788888888877665433 36
Q ss_pred ccEEEEccCCCc
Q 012954 218 VDAILMDLGMSS 229 (452)
Q Consensus 218 VDGILfDLGvSS 229 (452)
+|.|+...|...
T Consensus 160 iDiVVn~AG~~~ 171 (576)
T PLN03209 160 ASVVICCIGASE 171 (576)
T ss_pred CCEEEEcccccc
Confidence 999999999753
No 339
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=31.55 E-value=2.5e+02 Score=26.68 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=46.5
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc---hHHHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR---HIKSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~---~i~~~L~~~~~~l~~~ 216 (452)
|=|.||=-.+|.+.+ ..+.+|+.+|++++.++.+.+.+...+ +++.+..+.. .+.+++.+... ...
T Consensus 6 tGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~Dv~d~~~~~~~~~~~~~--~~g 75 (259)
T PRK08340 6 TASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--------EVYAVKADLSDKDDLKNLVKEAWE--LLG 75 (259)
T ss_pred EcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEcCCCCHHHHHHHHHHHHH--hcC
Confidence 334444445555442 223469999999998887776665431 3455555554 44444443211 124
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|.++.+-|+..
T Consensus 76 ~id~li~naG~~~ 88 (259)
T PRK08340 76 GIDALVWNAGNVR 88 (259)
T ss_pred CCCEEEECCCCCC
Confidence 6999999998743
No 340
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=31.43 E-value=77 Score=31.64 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=31.9
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHH
Q 012954 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFL 381 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~ 381 (452)
++-|+.++..+..+..+|+|||.+++-.-++-.+.+ ++.|.
T Consensus 217 ~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~-~~~~~ 257 (284)
T TIGR00536 217 DDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSL-KELLR 257 (284)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHH-HHHHH
Confidence 456788999999999999999999886666666644 44554
No 341
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=31.22 E-value=87 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.0
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS 180 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~ 180 (452)
|++.+++.+.. .+.++|||.=+|+|.=+.+++. ....++.-|+|+..+...+..++.
T Consensus 8 l~~~I~~~ip~-~~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPK-NKHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S--S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHHHHHhc
Confidence 67888888852 1688999998888844444433 335699999999998887755543
No 342
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=31.22 E-value=77 Score=32.60 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAH 177 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~r 177 (452)
|..++|.-+|+|==|.-+. ++ +..|.|+|.-+++++.|+++
T Consensus 90 g~~ilDvGCGgGLLSepLA-rl--ga~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLA-RL--GAQVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhH-hh--CCeeEeecccHHHHHHHHHh
Confidence 5679999999993332222 23 35699999999999999987
No 343
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=31.14 E-value=66 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEE
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVI 366 (452)
.+.....++.+.++|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 567788888889999999999876
No 344
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=31.11 E-value=3.8e+02 Score=25.08 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=48.3
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|=|.||=-.++.+.+ .....|++++++++..+.+.+.+...+ .++.++..++.+.+.+ +..... ..
T Consensus 12 ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (262)
T PRK13394 12 VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG-------GKAIGVAMDVTNEDAVNAGIDKVAE--RF 82 (262)
T ss_pred EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC-------ceEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 4555555444444442 222368999999988877766665432 2567778777766544 222210 12
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|+++..-|+.
T Consensus 83 ~~~d~vi~~ag~~ 95 (262)
T PRK13394 83 GSVDILVSNAGIQ 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 3589999998875
No 345
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.01 E-value=3.9e+02 Score=25.03 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=45.5
Q ss_pred EEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccc
Q 012954 136 SFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDEN 212 (452)
Q Consensus 136 iyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~ 212 (452)
.+..+|=|-|-|....|.+.+ ..|++++++++.++...+.+.. .++.++..++.+...+ +.+...
T Consensus 15 lItGa~g~iG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~- 82 (264)
T PRK12829 15 LVTGGASGIGRAIAEAFAEAG--ARVHVCDVSEAALAATAARLPG---------AKVTATVADVADPAQVERVFDTAVE- 82 (264)
T ss_pred EEeCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhc---------CceEEEEccCCCHHHHHHHHHHHHH-
Confidence 344555555555554444433 3699999998766544333221 1456666676665443 333210
Q ss_pred ccccCccEEEEccCCC
Q 012954 213 ILRSGVDAILMDLGMS 228 (452)
Q Consensus 213 l~~~~VDGILfDLGvS 228 (452)
...++|+|+..-|++
T Consensus 83 -~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 83 -RFGGLDVLVNNAGIA 97 (264)
T ss_pred -HhCCCCEEEECCCCC
Confidence 113699999999875
No 346
>PRK06914 short chain dehydrogenase; Provisional
Probab=30.75 E-value=2.9e+02 Score=26.47 Aligned_cols=82 Identities=10% Similarity=0.036 Sum_probs=47.0
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH--hhhcccccccC
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL--GQIDENILRSG 217 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L--~~~~~~l~~~~ 217 (452)
+|=|-|.+-..-|.+. ...|++++++++..+...+.+...+. ..+++++..+..+-.++- .+... ....
T Consensus 11 asg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~--~~~~ 81 (280)
T PRK06914 11 ASSGFGLLTTLELAKK--GYLVIATMRNPEKQENLLSQATQLNL-----QQNIKVQQLDVTDQNSIHNFQLVLK--EIGR 81 (280)
T ss_pred CCchHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhcCC-----CCceeEEecCCCCHHHHHHHHHHHH--hcCC
Confidence 3444444433333332 34699999999887766554443221 125777777777654432 22100 1236
Q ss_pred ccEEEEccCCCcc
Q 012954 218 VDAILMDLGMSSM 230 (452)
Q Consensus 218 VDGILfDLGvSS~ 230 (452)
+|+|+..-|++..
T Consensus 82 id~vv~~ag~~~~ 94 (280)
T PRK06914 82 IDLLVNNAGYANG 94 (280)
T ss_pred eeEEEECCccccc
Confidence 8999999998763
No 347
>PRK06125 short chain dehydrogenase; Provisional
Probab=30.68 E-value=2.7e+02 Score=26.38 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=45.5
Q ss_pred EEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 139 DCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 139 DaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
-+|=|-|.+....|.+.+ ..|+++|++++..+...+.+..... .++.++..+..+..++ +...
T Consensus 14 G~~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~D~~~~~~~~~~~~~~------ 79 (259)
T PRK06125 14 GASKGIGAAAAEAFAAEG--CHLHLVARDADALEALAADLRAAHG------VDVAVHALDLSSPEAREQLAAEA------ 79 (259)
T ss_pred CCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhcC------CceEEEEecCCCHHHHHHHHHHh------
Confidence 444444444444443332 3699999998877766665554311 2566666666654443 3322
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|+++.+-|+.
T Consensus 80 g~id~lv~~ag~~ 92 (259)
T PRK06125 80 GDIDILVNNAGAI 92 (259)
T ss_pred CCCCEEEECCCCC
Confidence 3699999998874
No 348
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=30.43 E-value=45 Score=34.52 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 341 DELKTLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 341 ~EL~~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
..+.....+|..+.++|+|||+++|-+++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 344456789999999999999999998864
No 349
>PRK07102 short chain dehydrogenase; Provisional
Probab=30.36 E-value=3.3e+02 Score=25.44 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=44.3
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~~ 216 (452)
|-|.||=-.++.+.+ ..+..|+++|++++..+...+.+.... ..+++++..+-.+. .+++.+.. .
T Consensus 7 tGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~-----~ 75 (243)
T PRK07102 7 IGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG------AVAVSTHELDILDTASHAAFLDSLP-----A 75 (243)
T ss_pred EcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------CCeEEEEecCCCChHHHHHHHHHHh-----h
Confidence 444454444444442 223469999999987765544443321 12677776665544 44444332 2
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++.+-|+.
T Consensus 76 ~~d~vv~~ag~~ 87 (243)
T PRK07102 76 LPDIVLIAVGTL 87 (243)
T ss_pred cCCEEEECCcCC
Confidence 479999988863
No 350
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=30.22 E-value=1.1e+02 Score=33.98 Aligned_cols=15 Identities=47% Similarity=0.822 Sum_probs=13.2
Q ss_pred CEEEEEccCCChhHH
Q 012954 135 TSFVDCTLGAAGHSS 149 (452)
Q Consensus 135 giyVDaTlG~GGHS~ 149 (452)
-.|||.|-|.||.+.
T Consensus 48 P~FvdvTWgagG~ta 62 (590)
T KOG0564|consen 48 PTFVDVTWGAGGSTA 62 (590)
T ss_pred CeEEEEEecCCCCcc
Confidence 599999999999664
No 351
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=29.95 E-value=65 Score=31.24 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHHHHhhc--CCCeEEEEeecc
Q 012954 340 NDELKTLESSLHACFDCLA--PGGRLGVISFHS 370 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~--pGGRLvVISFHS 370 (452)
+.+++.+.++|..+++.|. ++.|+++|||-+
T Consensus 19 ~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~ 51 (243)
T PF04811_consen 19 SGLLQSLIESLKSALDSLPGDERTRVGIITFDS 51 (243)
T ss_dssp HTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESS
T ss_pred ccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCC
Confidence 3689999999999999999 999999999953
No 352
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=29.91 E-value=35 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEee
Q 012954 343 LKTLESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 343 L~~L~~~L~~a~~~L~pGGRLvVISF 368 (452)
+++-.++|.....+|||||.|+.+..
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 67888999999999999999999864
No 353
>PRK07041 short chain dehydrogenase; Provisional
Probab=29.67 E-value=3.7e+02 Score=24.76 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=37.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCCCc
Q 012954 159 KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 159 g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
..|++++++++.++...+.++. + .+++++..+..+..++..-... ...+|+++..-|+.+
T Consensus 22 ~~v~~~~r~~~~~~~~~~~~~~-~-------~~~~~~~~Dl~~~~~~~~~~~~---~~~id~li~~ag~~~ 81 (230)
T PRK07041 22 ARVTIASRSRDRLAAAARALGG-G-------APVRTAALDITDEAAVDAFFAE---AGPFDHVVITAADTP 81 (230)
T ss_pred CEEEEEeCCHHHHHHHHHHHhc-C-------CceEEEEccCCCHHHHHHHHHh---cCCCCEEEECCCCCC
Confidence 4699999998776655444431 1 2566677776665554332211 236899999888753
No 354
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=29.66 E-value=2.5e+02 Score=30.26 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=46.6
Q ss_pred HHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH
Q 012954 124 VLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI 202 (452)
Q Consensus 124 vl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i 202 (452)
|+++-.+ -.+++++|.-.|.|=-| .+....+- .+|||++-..-| +.|++.++.... ..|+..+.+.-++|
T Consensus 169 il~N~sD-F~~kiVlDVGaGSGILS-~FAaqAGA-~~vYAvEAS~MA-qyA~~Lv~~N~~-----~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 169 ILENHSD-FQDKIVLDVGAGSGILS-FFAAQAGA-KKVYAVEASEMA-QYARKLVASNNL-----ADRITVIPGKIEDI 238 (517)
T ss_pred HHhcccc-cCCcEEEEecCCccHHH-HHHHHhCc-ceEEEEehhHHH-HHHHHHHhcCCc-----cceEEEccCccccc
Confidence 4444443 46899999999999333 33333443 579999876444 567777765432 46888888888776
No 355
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=29.42 E-value=3.7e+02 Score=25.40 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=46.4
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ .....|+.+|++++.++...+.+...+ .++.++..+..+.+++ +.+... ...
T Consensus 18 tGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------~~~~~~~~Dl~d~~~i~~~~~~~~~--~~~ 88 (259)
T PRK08213 18 TGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-------IDALWIAADVADEADIERLAEETLE--RFG 88 (259)
T ss_pred ECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence 334444434444332 122369999999887776666555432 2566778787765544 222210 013
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+|+..-|++
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 699999998875
No 356
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=29.17 E-value=52 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeec
Q 012954 346 LESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
...+|..+..+|+|||++++.+-+
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCC
Confidence 467888899999999999987643
No 357
>PRK06720 hypothetical protein; Provisional
Probab=29.15 E-value=4e+02 Score=24.62 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=45.6
Q ss_pred EEEEccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhccc
Q 012954 137 FVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDEN 212 (452)
Q Consensus 137 yVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~ 212 (452)
.+=.|-|+||=-.++...+ .....|+.+|++.+.++.+.+.+...+. ++.++..+.++ +.+++.+...
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~-------~~~~~~~Dl~~~~~v~~~v~~~~~- 89 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG-------EALFVSYDMEKQGDWQRVISITLN- 89 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-------cEEEEEccCCCHHHHHHHHHHHHH-
Confidence 3344555444334444332 1234689999999888766555654321 34455555544 3443332211
Q ss_pred ccccCccEEEEccCCCc
Q 012954 213 ILRSGVDAILMDLGMSS 229 (452)
Q Consensus 213 l~~~~VDGILfDLGvSS 229 (452)
....+|+++-+-|+..
T Consensus 90 -~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 90 -AFSRIDMLFQNAGLYK 105 (169)
T ss_pred -HcCCCCEEEECCCcCC
Confidence 1236999999888643
No 358
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=28.79 E-value=64 Score=33.33 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHhh
Q 012954 330 RVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLSI 383 (452)
Q Consensus 330 R~FQALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~~ 383 (452)
=+|.|-|+-|+.||+.|+.=+..+.++|..||-+.= ==|=++..+.|+.
T Consensus 208 ~al~a~K~DI~EEldRL~sHv~~~~~iL~~~g~vGR-----kLDFl~QE~nREa 256 (290)
T COG1561 208 VALLAQKADIAEELDRLKSHVKEFRNILEKGGPVGR-----KLDFLMQEFNREA 256 (290)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCccch-----hHHHHHHHHhHHH
Confidence 368999999999999999999999999988875431 1155666677764
No 359
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=28.73 E-value=40 Score=33.07 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 342 ELKTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 342 EL~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
+.+.|+.++..+.+.|+|||.|++=|++
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4577888999999999999999999985
No 360
>PRK09242 tropinone reductase; Provisional
Probab=28.65 E-value=4e+02 Score=25.10 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=47.1
Q ss_pred ccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|-|.||--.++.+.+- .+..|+.++++++.++...+.+..... ..++.++..++.+.++ .+..... ...
T Consensus 15 tGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g 87 (257)
T PRK09242 15 TGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-----EREVHGLAADVSDDEDRRAILDWVED--HWD 87 (257)
T ss_pred eCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----CCeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 4444555555555532 234699999998877766555543211 1257777777765443 3332211 023
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
++|+++..-|+.
T Consensus 88 ~id~li~~ag~~ 99 (257)
T PRK09242 88 GLHILVNNAGGN 99 (257)
T ss_pred CCCEEEECCCCC
Confidence 699999998874
No 361
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=28.51 E-value=52 Score=34.79 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.8
Q ss_pred HHHH-HHHHHHHHHhhcCCCeEEEEee
Q 012954 343 LKTL-ESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 343 L~~L-~~~L~~a~~~L~pGGRLvVISF 368 (452)
|++| +.+|+.+.+.|++||++|.-+.
T Consensus 285 l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 285 LDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5554 6789999999999999999998
No 362
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=28.47 E-value=1.6e+02 Score=27.92 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=25.8
Q ss_pred hHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHH
Q 012954 121 LGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALA 172 (452)
Q Consensus 121 l~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~ 172 (452)
|+-+.+... ...|-++|.-+|+| -|.-=|.. +|+ ..++.||+.-.+..
T Consensus 18 L~~a~~~v~--~~~G~VlElGLGNG-RTydHLRe~~p~-R~I~vfDR~l~~hp 66 (160)
T PF12692_consen 18 LNWAAAQVA--GLPGPVLELGLGNG-RTYDHLREIFPD-RRIYVFDRALACHP 66 (160)
T ss_dssp HHHHHHHTT--T--S-EEEE--TTS-HHHHHHHHH--S-S-EEEEESS--S-G
T ss_pred HHHHHHHhc--CCCCceEEeccCCC-ccHHHHHHhCCC-CeEEEEeeecccCC
Confidence 344444444 34589999999999 66665655 777 56999999865543
No 363
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=28.44 E-value=55 Score=32.88 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchh
Q 012954 338 AVNDELKTLESSLHACFDCLAPGGRLGVISFHSLE 372 (452)
Q Consensus 338 ~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLE 372 (452)
++|||+-.|- -....=++..||-.+.|++||+|
T Consensus 10 ~~sd~~l~lv--aPvvvYWv~Sg~f~~yi~l~~~e 42 (287)
T KOG0874|consen 10 EMSDEVLGLV--APVVVYWVYSGIFHVYITLHSLE 42 (287)
T ss_pred ccchhHhhhh--hHHHHHhhhcCCceEEEEechhh
Confidence 5677765543 34466788899999999999988
No 364
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=28.30 E-value=54 Score=31.85 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEee
Q 012954 346 LESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISF 368 (452)
...+|..+.+.|+|||++++...
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcC
Confidence 46788889999999999998644
No 365
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=28.17 E-value=86 Score=30.86 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHhhcCC---CeEEEEeecc
Q 012954 340 NDELKTLESSLHACFDCLAPG---GRLGVISFHS 370 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pG---GRLvVISFHS 370 (452)
+.+++.+.++|..+++.|-++ -++++|||-+
T Consensus 19 ~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~ 52 (244)
T cd01479 19 SGLLATACEALLSNLDNLPGDDPRTRVGFITFDS 52 (244)
T ss_pred hChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC
Confidence 568999999999999999866 9999999865
No 366
>PRK09291 short chain dehydrogenase; Provisional
Probab=28.12 E-value=3.3e+02 Score=25.52 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=44.3
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCcc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVD 219 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VD 219 (452)
|=|.||=-.++++.+ ..+..|+++++++...+...+.....+ .++.++..+..+..++.... ..++|
T Consensus 8 tGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~-----~~~id 75 (257)
T PRK09291 8 TGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG-------LALRVEKLDLTDAIDRAQAA-----EWDVD 75 (257)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcceEEEeeCCCHHHHHHHh-----cCCCC
Confidence 444444444444432 123468999999876655444333322 24666777777765554332 13699
Q ss_pred EEEEccCCC
Q 012954 220 AILMDLGMS 228 (452)
Q Consensus 220 GILfDLGvS 228 (452)
.++.+-|+.
T Consensus 76 ~vi~~ag~~ 84 (257)
T PRK09291 76 VLLNNAGIG 84 (257)
T ss_pred EEEECCCcC
Confidence 999998874
No 367
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=27.89 E-value=1.9e+02 Score=30.75 Aligned_cols=104 Identities=16% Similarity=0.081 Sum_probs=63.9
Q ss_pred ccCCchhhhhhcCCCCccccchHHHHhhcc---------CCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHH
Q 012954 100 NKDYDYESIIQQQQSSHIPVMLGEVLDVFS---------SSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSA 170 (452)
Q Consensus 100 ~~~~~~~~~~~~~~~~H~PVLl~Evl~~L~---------~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~A 170 (452)
..++.+++| .++.+-=-||+..+.... ..-.+.+++|.=.|.|=-|.+=+ +.+ ..+|||+|--.-|
T Consensus 21 ~~~~Yf~sY---~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~a-kAG-A~~V~aVe~S~ia 95 (346)
T KOG1499|consen 21 SDDYYFDSY---AHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAA-KAG-ARKVYAVEASSIA 95 (346)
T ss_pred hhhhhhhhh---hchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHH-HhC-cceEEEEechHHH
Confidence 344555655 444433345555444331 01257899999999884443333 344 4579999998877
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEE
Q 012954 171 LAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILM 223 (452)
Q Consensus 171 i~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILf 223 (452)
+.|.+.....+. ...++++++.-+++ .| +..+||-|+=
T Consensus 96 -~~a~~iv~~N~~-----~~ii~vi~gkvEdi--~L-------P~eKVDiIvS 133 (346)
T KOG1499|consen 96 -DFARKIVKDNGL-----EDVITVIKGKVEDI--EL-------PVEKVDIIVS 133 (346)
T ss_pred -HHHHHHHHhcCc-----cceEEEeecceEEE--ec-------CccceeEEee
Confidence 888887765543 34688888877765 22 2357887764
No 368
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.71 E-value=3.6e+02 Score=26.26 Aligned_cols=81 Identities=25% Similarity=0.211 Sum_probs=48.3
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|=|.||=-.++.+.+ ..+.+|+..|+++..++.+.+.|...+ .++.++..+..+..++ +.+... ..
T Consensus 11 VTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 81 (275)
T PRK05876 11 ITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------FDVHGVMCDVRHREEVTHLADEAFR--LL 81 (275)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEeCCCCCHHHHHHHHHHHHH--Hc
Confidence 3555555555555543 223468999999988877666665432 2566677777665544 332211 12
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+++-+=|+..
T Consensus 82 g~id~li~nAg~~~ 95 (275)
T PRK05876 82 GHVDVVFSNAGIVV 95 (275)
T ss_pred CCCCEEEECCCcCC
Confidence 36999998888753
No 369
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.28 E-value=3e+02 Score=25.96 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=46.4
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|-|.||--.++.+.+ ..+..|+++|++++.++...+.+ + .++.++..+..+..+ .+.+... ...
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------~~~~~~~~Dl~~~~~i~~~~~~~~~--~~~ 73 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G-------DNLYIAQLDVRNRAAIEEMLASLPA--EWR 73 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c-------cceEEEEecCCCHHHHHHHHHHHHH--HcC
Confidence 556677777777663 33447999999987665443322 1 145566666655443 3333211 013
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|++.
T Consensus 74 ~id~vi~~ag~~~ 86 (248)
T PRK10538 74 NIDVLVNNAGLAL 86 (248)
T ss_pred CCCEEEECCCccC
Confidence 6999999999764
No 370
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=27.25 E-value=1.1e+02 Score=31.34 Aligned_cols=59 Identities=12% Similarity=0.282 Sum_probs=45.5
Q ss_pred chHHHHhhccCC-CCCCEEEEEccCCChhHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHHH
Q 012954 120 MLGEVLDVFSSS-RTITSFVDCTLGAAGHSSAIIRAHPE-LKLHIGVDVDPSALAKARAHL 178 (452)
Q Consensus 120 Ll~Evl~~L~~~-~~ggiyVDaTlG~GGHS~aIL~~~p~-~g~VigfDrD~~Ai~~Ak~rL 178 (452)
|++|.=+.+... ++.+.++..-+|.|.-..-||+..++ .=+|||+|-.|.|++..++.-
T Consensus 57 L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 57 LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSS 117 (264)
T ss_pred HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcc
Confidence 788877777521 12237899999999999999998766 236999999999999988753
No 371
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=27.23 E-value=39 Score=36.05 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.3
Q ss_pred hhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHH
Q 012954 126 DVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALA 172 (452)
Q Consensus 126 ~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~ 172 (452)
.++.-..||+++.|==.|.|| .|+...--++.|+|-|+|-..+.
T Consensus 201 AN~Amv~pGdivyDPFVGTGs---lLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGS---LLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred hhhhccCCCCEEecCccccCc---eeeehhhhcceeeccccchheee
Confidence 333334699999999999995 34433223467999999987765
No 372
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=27.10 E-value=3.5e+02 Score=25.44 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=45.5
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|-|.||=-.++.+.+ ..+..|+.+|++++.++...+.++..+ .++..+..+..+-.. .+.+... ...
T Consensus 17 tGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 87 (256)
T PRK06124 17 TGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------GAAEALAFDIADEEAVAAAFARIDA--EHG 87 (256)
T ss_pred ECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEccCCCHHHHHHHHHHHHH--hcC
Confidence 444444444444332 123469999999987776666565432 246666666655433 3333221 123
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++..-|+.
T Consensus 88 ~id~vi~~ag~~ 99 (256)
T PRK06124 88 RLDILVNNVGAR 99 (256)
T ss_pred CCCEEEECCCCC
Confidence 689999999874
No 373
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=26.79 E-value=66 Score=33.92 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeec
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFH 369 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFH 369 (452)
..+...+..+.++|+|||++++.++.
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 45677899999999999999997764
No 374
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.74 E-value=4.7e+02 Score=25.93 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=47.8
Q ss_pred CCEEEEEccCCChhHHHHHHhC-CCCCEEEEEeCC-HHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH---HHHhh
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVD-PSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK---SVLGQ 208 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD-~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~---~~L~~ 208 (452)
++++| .|=|.||=-.++.+.+ ....+|+..|+. ....+...+.+...+ .++.++..+..+.+ ++++.
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g-------~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG-------AKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC-------CeEEEEeCCCCCHHHHHHHHHH
Confidence 45554 5666665555555442 223468888974 444444444454432 26777777766543 33332
Q ss_pred hcccccccCccEEEEccCCCc
Q 012954 209 IDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 209 ~~~~l~~~~VDGILfDLGvSS 229 (452)
.. ....+|+++.+-|+..
T Consensus 84 ~~---~~g~iD~li~nAG~~~ 101 (306)
T PRK07792 84 AV---GLGGLDIVVNNAGITR 101 (306)
T ss_pred HH---HhCCCCEEEECCCCCC
Confidence 21 1246999999998753
No 375
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.42 E-value=3.8e+02 Score=25.11 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred EccCCChhHHHHHHhCC-CCCEEEEEeCC-HHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccc
Q 012954 140 CTLGAAGHSSAIIRAHP-ELKLHIGVDVD-PSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENIL 214 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p-~~g~VigfDrD-~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~ 214 (452)
.|=|.||=..++...+- ....|+++|+. +...+...+.++... .++.++..++.+-.++ +..... .
T Consensus 7 ItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~ 77 (256)
T PRK12745 7 VTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALG-------VEVIFFPADVADLSAHEAMLDAAQA--A 77 (256)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcC-------CceEEEEecCCCHHHHHHHHHHHHH--h
Confidence 34555555555544421 22368999974 444444444444322 2577777777764443 333211 0
Q ss_pred ccCccEEEEccCCCcc
Q 012954 215 RSGVDAILMDLGMSSM 230 (452)
Q Consensus 215 ~~~VDGILfDLGvSS~ 230 (452)
...+|+|+..-|+.+.
T Consensus 78 ~~~id~vi~~ag~~~~ 93 (256)
T PRK12745 78 WGRIDCLVNNAGVGVK 93 (256)
T ss_pred cCCCCEEEECCccCCC
Confidence 1369999999988654
No 376
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=26.12 E-value=35 Score=30.24 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEeecchh
Q 012954 344 KTLESSLHACFDCLAPGGRLGVISFHSLE 372 (452)
Q Consensus 344 ~~L~~~L~~a~~~L~pGGRLvVISFHSLE 372 (452)
...+.+|..+.++|++||++++..++..+
T Consensus 87 ~~~~~~l~~~~~~lk~~G~~i~~~~~~~~ 115 (152)
T PF13847_consen 87 PDPEKVLKNIIRLLKPGGILIISDPNHND 115 (152)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEEEEEEHSH
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEECChHH
Confidence 34457778889999999999999888443
No 377
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.05 E-value=5.3e+02 Score=24.11 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=46.4
Q ss_pred EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhccccc
Q 012954 138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENIL 214 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~ 214 (452)
.-+|=|-|-|....|.+.+ ..|+.+|+++..++...+.+...+ .++..+..+..+- ..++.+... .
T Consensus 11 tGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~ 79 (258)
T PRK07890 11 SGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAAEIDDLG-------RRALAVPTDITDEDQCANLVALALE--R 79 (258)
T ss_pred ECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhC-------CceEEEecCCCCHHHHHHHHHHHHH--H
Confidence 3444444545444444333 469999999987766665554432 2566666666544 333433211 0
Q ss_pred ccCccEEEEccCCC
Q 012954 215 RSGVDAILMDLGMS 228 (452)
Q Consensus 215 ~~~VDGILfDLGvS 228 (452)
...+|+++..-|+.
T Consensus 80 ~g~~d~vi~~ag~~ 93 (258)
T PRK07890 80 FGRVDALVNNAFRV 93 (258)
T ss_pred cCCccEEEECCccC
Confidence 13699999988874
No 378
>PRK07024 short chain dehydrogenase; Provisional
Probab=25.99 E-value=3.7e+02 Score=25.47 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=44.6
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ .....|+.+|++++.++...+.+... .++.++..+..+-+++ +.+... ...
T Consensus 8 tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~i~~~~~~~~~--~~g 77 (257)
T PRK07024 8 TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--------ARVSVYAADVRDADALAAAAADFIA--AHG 77 (257)
T ss_pred EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--------CeeEEEEcCCCCHHHHHHHHHHHHH--hCC
Confidence 444444444444442 12336999999988776554433211 1566777777665444 222210 123
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|.++.+-|+..
T Consensus 78 ~id~lv~~ag~~~ 90 (257)
T PRK07024 78 LPDVVIANAGISV 90 (257)
T ss_pred CCCEEEECCCcCC
Confidence 5899999988753
No 379
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.89 E-value=3.3e+02 Score=25.33 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=46.1
Q ss_pred EEEccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHH---HHHhhhcccc
Q 012954 138 VDCTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIK---SVLGQIDENI 213 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~---~~L~~~~~~l 213 (452)
+=.|-|.||--.++.+.+- ....|++++++++.++...+.+ +. ++..++.+..+.. .++.....
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~-------~~~~~~~D~~~~~~~~~~~~~~~~-- 76 (249)
T PRK06500 9 ALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---GE-------SALVIRADAGDVAAQKALAQALAE-- 76 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---CC-------ceEEEEecCCCHHHHHHHHHHHHH--
Confidence 3347777777777776632 2346999999987665544332 11 4555555555443 33332211
Q ss_pred cccCccEEEEccCCC
Q 012954 214 LRSGVDAILMDLGMS 228 (452)
Q Consensus 214 ~~~~VDGILfDLGvS 228 (452)
....+|+++.+-|++
T Consensus 77 ~~~~id~vi~~ag~~ 91 (249)
T PRK06500 77 AFGRLDAVFINAGVA 91 (249)
T ss_pred HhCCCCEEEECCCCC
Confidence 013699999888864
No 380
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.79 E-value=3.3e+02 Score=25.56 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=45.3
Q ss_pred EEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhcccccc
Q 012954 139 DCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILR 215 (452)
Q Consensus 139 DaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~ 215 (452)
-+|=|-|-+...-|.+. ...|+.+|++++.++...+.++..+ .++..+..+..+. ..++.+... ..
T Consensus 14 Gas~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~i~~~~~~~~~--~~ 82 (253)
T PRK06172 14 GGAAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREAG-------GEALFVACDVTRDAEVKALVEQTIA--AY 82 (253)
T ss_pred CCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence 33444444443334333 2469999999988776666665442 2466666655543 334433211 01
Q ss_pred cCccEEEEccCCC
Q 012954 216 SGVDAILMDLGMS 228 (452)
Q Consensus 216 ~~VDGILfDLGvS 228 (452)
..+|+|+..-|++
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 3689999888875
No 381
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=25.70 E-value=1.1e+02 Score=33.16 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 339 VNDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 339 VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
-.+-|+.+++.+..+.++|+|||++++..=++-.+.+. +.+.+
T Consensus 353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~-~ll~~ 395 (423)
T PRK14966 353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVR-GVLAE 395 (423)
T ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHH-HHHHH
Confidence 35678889999999999999999988866556555444 44543
No 382
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=25.66 E-value=4.5e+02 Score=24.52 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=44.6
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
+|=|-|-|-..-|.+.+ .+|+.+++++...+...+.+...+ .++.++..+..+...+ +..... ...
T Consensus 8 ~sg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dl~~~~~i~~~~~~~~~--~~~ 76 (254)
T TIGR02415 8 GAQGIGKGIAERLAKDG--FAVAVADLNEETAKETAKEINQAG-------GKAVAYKLDVSDKDQVFSAIDQAAE--KFG 76 (254)
T ss_pred CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 33344444333333333 468999999877765555555432 2566777776654433 333211 113
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++.+-|+.
T Consensus 77 ~id~vi~~ag~~ 88 (254)
T TIGR02415 77 GFDVMVNNAGVA 88 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999999875
No 383
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=25.47 E-value=65 Score=31.26 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeecchhH
Q 012954 345 TLESSLHACFDCLAPGGRLGVISFHSLED 373 (452)
Q Consensus 345 ~L~~~L~~a~~~L~pGGRLvVISFHSLED 373 (452)
.-.+.+..+.++|+|||++.+++|.--++
T Consensus 133 ~R~~~~~~l~~lL~pgG~~~l~~~~~~~~ 161 (218)
T PRK13255 133 MRERYVQQLAALLPAGCRGLLVTLDYPQE 161 (218)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEeCCc
Confidence 35677888899999999999988875444
No 384
>PRK06196 oxidoreductase; Provisional
Probab=25.39 E-value=3.7e+02 Score=26.61 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred EccCCChhHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAHP-ELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p-~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~ 215 (452)
.|-|.||=-.++.+.+- ....|++++++++..+.+.+.+. ++.++..+..+. .+++.+... ..
T Consensus 31 ITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----------~v~~~~~Dl~d~~~v~~~~~~~~~--~~ 97 (315)
T PRK06196 31 VTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----------GVEVVMLDLADLESVRAFAERFLD--SG 97 (315)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------hCeEEEccCCCHHHHHHHHHHHHh--cC
Confidence 46666665566555532 23469999999887665544332 134455555544 444443311 12
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|.++.+-|+..
T Consensus 98 ~~iD~li~nAg~~~ 111 (315)
T PRK06196 98 RRIDILINNAGVMA 111 (315)
T ss_pred CCCCEEEECCCCCC
Confidence 46999999999753
No 385
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=92 Score=31.23 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=47.9
Q ss_pred ccchHHHHhhccC-CCCCCEEEEEccCCChhHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHhhhc
Q 012954 118 PVMLGEVLDVFSS-SRTITSFVDCTLGAAGHSSAIIRAHPELKL-HIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 118 PVLl~Evl~~L~~-~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~-VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
|=|=.+++++|.+ .+||-.++|.--|.|.=|..+..-+...+. .+|+|--++.++.++++|..+.
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 5578888888851 358999999777777555444434444443 3899999999999999997753
No 386
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=25.06 E-value=4.5e+02 Score=24.75 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=44.6
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ ..+..|+.+|+++..+....+.+...+ .++..+..+..+. ...+..... ...
T Consensus 15 tGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 85 (254)
T PRK08085 15 TGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-------IKAHAAPFNVTHKQEVEAAIEHIEK--DIG 85 (254)
T ss_pred ECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-------CeEEEEecCCCCHHHHHHHHHHHHH--hcC
Confidence 444444444444442 223469999999887776655554432 2455555555543 333333211 123
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++..-|+.
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 699999998875
No 387
>PRK05717 oxidoreductase; Validated
Probab=24.77 E-value=5.2e+02 Score=24.38 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=46.7
Q ss_pred CCCEEEEEccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhh
Q 012954 133 TITSFVDCTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQ 208 (452)
Q Consensus 133 ~ggiyVDaTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~ 208 (452)
.+.+++ .|=|.||=-.++.+.+ ....+|+.+|+++...+...+ ..+ .++.++..+..+.+++ +.+
T Consensus 9 ~~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~-------~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 9 NGRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG-------ENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC-------CceEEEEccCCCHHHHHHHHHH
Confidence 345444 5666666555555553 233479999998765433222 211 1456667766654433 333
Q ss_pred hcccccccCccEEEEccCCCc
Q 012954 209 IDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 209 ~~~~l~~~~VDGILfDLGvSS 229 (452)
... ....+|+++..-|+..
T Consensus 78 ~~~--~~g~id~li~~ag~~~ 96 (255)
T PRK05717 78 VLG--QFGRLDALVCNAAIAD 96 (255)
T ss_pred HHH--HhCCCCEEEECCCccc
Confidence 210 0136999999998764
No 388
>PRK06139 short chain dehydrogenase; Provisional
Probab=24.72 E-value=3.6e+02 Score=27.47 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.5
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~ 215 (452)
.|=|.||=-.++.+.+ ....+|+.++++++.++...+.++..+. ++..+..+..+ +.+++.+... ..
T Consensus 12 ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-------~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 82 (330)
T PRK06139 12 ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-------EVLVVPTDVTDADQVKALATQAAS--FG 82 (330)
T ss_pred EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-------cEEEEEeeCCCHHHHHHHHHHHHH--hc
Confidence 3444444444444442 2234699999999998877666665432 45555555554 3333333211 11
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|.++-+-|+..
T Consensus 83 g~iD~lVnnAG~~~ 96 (330)
T PRK06139 83 GRIDVWVNNVGVGA 96 (330)
T ss_pred CCCCEEEECCCcCC
Confidence 46999999999853
No 389
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.72 E-value=4e+02 Score=24.80 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=45.4
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
|=|.||=...+.+.+ ....+|+++|++++..+...+.++..+ .++.++..+..+.+++ +..... ...
T Consensus 12 tG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 82 (241)
T PRK07454 12 TGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-------VKAAAYSIDLSNPEAIAPGIAELLE--QFG 82 (241)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-------CcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 444455445555543 223479999999887766555454321 2566677766654443 332211 013
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++..-|+.
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 599999888863
No 390
>PRK06138 short chain dehydrogenase; Provisional
Probab=24.52 E-value=4.7e+02 Score=24.31 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=45.6
Q ss_pred EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccc
Q 012954 138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENIL 214 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~ 214 (452)
.-||=|-|-|....|.+. +.+|++++++++......+.+. .+ .++.++..+..+... .+.+... .
T Consensus 11 tG~sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-~~-------~~~~~~~~D~~~~~~~~~~~~~i~~--~ 78 (252)
T PRK06138 11 TGAGSGIGRATAKLFARE--GARVVVADRDAEAAERVAAAIA-AG-------GRAFARQGDVGSAEAVEALVDFVAA--R 78 (252)
T ss_pred eCCCchHHHHHHHHHHHC--CCeEEEecCCHHHHHHHHHHHh-cC-------CeEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence 344444444444434333 2469999999887765554443 11 256677777665443 3333211 0
Q ss_pred ccCccEEEEccCCCc
Q 012954 215 RSGVDAILMDLGMSS 229 (452)
Q Consensus 215 ~~~VDGILfDLGvSS 229 (452)
...+|+++-.-|+++
T Consensus 79 ~~~id~vi~~ag~~~ 93 (252)
T PRK06138 79 WGRLDVLVNNAGFGC 93 (252)
T ss_pred cCCCCEEEECCCCCC
Confidence 136999999888764
No 391
>PRK07831 short chain dehydrogenase; Provisional
Probab=24.45 E-value=4.5e+02 Score=24.89 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=44.6
Q ss_pred CCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhh-hccCCCCCCceEEEEccCcchH---HHHHhhhcccccccCc
Q 012954 143 GAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNS-LLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILRSGV 218 (452)
Q Consensus 143 G~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~-~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~~~V 218 (452)
|-|......|.+.+ ..|+.+|++++.++.+.+.++. ++. .++.++..+..+. ..++.+... ....+
T Consensus 29 gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g~i 98 (262)
T PRK07831 29 GIGSATARRALEEG--ARVVISDIHERRLGETADELAAELGL------GRVEAVVCDVTSEAQVDALIDAAVE--RLGRL 98 (262)
T ss_pred cHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhcCC------ceEEEEEccCCCHHHHHHHHHHHHH--HcCCC
Confidence 44444444443333 3589999999888877766654 221 2566676666544 344433211 01369
Q ss_pred cEEEEccCCC
Q 012954 219 DAILMDLGMS 228 (452)
Q Consensus 219 DGILfDLGvS 228 (452)
|+++.+-|+.
T Consensus 99 d~li~~ag~~ 108 (262)
T PRK07831 99 DVLVNNAGLG 108 (262)
T ss_pred CEEEECCCCC
Confidence 9999998864
No 392
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=24.31 E-value=45 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHhhHHHHHHHHHHHHHhhcCCCeEEEE
Q 012954 339 VNDELKTLESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 339 VN~EL~~L~~~L~~a~~~L~pGGRLvVI 366 (452)
.|.=-+-|.+++..+..+|.|||+|+|=
T Consensus 181 LNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 181 LNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 5788889999999999999999999984
No 393
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=24.19 E-value=5.4e+02 Score=24.22 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=43.3
Q ss_pred ChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---HhhhcccccccCccEE
Q 012954 145 AGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRSGVDAI 221 (452)
Q Consensus 145 GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~~VDGI 221 (452)
|.|....|.+. ...|+.+|+++..++...+.+..... ..+++++..+..+...+ +.+... ....+|+|
T Consensus 15 G~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~~~--~~~~id~v 85 (259)
T PRK12384 15 GAFLCHGLAEE--GYRVAVADINSEKAANVAQEINAEYG-----EGMAYGFGADATSEQSVLALSRGVDE--IFGRVDLL 85 (259)
T ss_pred HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcC-----CceeEEEEccCCCHHHHHHHHHHHHH--HcCCCCEE
Confidence 43444444333 23689999998877665554543211 12577777777664433 333211 01369999
Q ss_pred EEccCCCc
Q 012954 222 LMDLGMSS 229 (452)
Q Consensus 222 LfDLGvSS 229 (452)
+..=|++.
T Consensus 86 v~~ag~~~ 93 (259)
T PRK12384 86 VYNAGIAK 93 (259)
T ss_pred EECCCcCC
Confidence 98888754
No 394
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.02 E-value=1e+02 Score=31.28 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCccccchHHHHhhccCCCCC-C-EE--EEEccCCChhHHHHHHh--CCC----CCEEEEEeCCHHHHHHHHH
Q 012954 114 SSHIPVMLGEVLDVFSSSRTI-T-SF--VDCTLGAAGHSSAIIRA--HPE----LKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 114 ~~H~PVLl~Evl~~L~~~~~g-g-iy--VDaTlG~GGHS~aIL~~--~p~----~g~VigfDrD~~Ai~~Ak~ 176 (452)
..|.++|-++|+..|.....+ . .+ .=|--|.==+|.||+-. ++. .-.|+|.|+|..+|+.|+.
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 349999999999877522221 1 23 33444555678887654 432 3469999999999999975
No 395
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.00 E-value=2.4e+02 Score=27.45 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=45.5
Q ss_pred CCcccc-chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 114 SSHIPV-MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 114 ~~H~PV-Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
..=.|| |+.-++.... .++.+++|==.|.| |+.++.. ++. +.+|+|++++-++.+.+++....
T Consensus 204 p~~~P~~l~~r~i~~~s--~~~diVlDpf~GsG--tt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 204 PAQKPLALIERLIRDYS--FPGDIVLDPFAGSG--TTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCChHHHHHHHHHhcC--CCCCEEeecCCCCC--hHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhhc
Confidence 344666 6666666643 58888888777777 5555544 543 58999999999999999997753
No 396
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=23.75 E-value=3.7e+02 Score=26.27 Aligned_cols=91 Identities=9% Similarity=0.127 Sum_probs=63.3
Q ss_pred ccccchHHHHhhccCCCCCCEEEEEccCCChhHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEE
Q 012954 116 HIPVMLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRA-HPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHT 194 (452)
Q Consensus 116 H~PVLl~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~-~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~l 194 (452)
--|.+.+-+..... +..|--++..--|.|=-|++||++ ..+. .|++++.|++-...-.+ .|. -+++
T Consensus 32 sSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~-~L~~iE~~~dF~~~L~~---~~p--------~~~i 98 (194)
T COG3963 32 SSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPE-SLTAIEYSPDFVCHLNQ---LYP--------GVNI 98 (194)
T ss_pred CcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCcc-ceEEEEeCHHHHHHHHH---hCC--------Cccc
Confidence 34556666666665 456668899999999999999999 5554 59999999987765443 332 2346
Q ss_pred EccCcchHHHHHhhhcccccccCccEEEE
Q 012954 195 FAKNFRHIKSVLGQIDENILRSGVDAILM 223 (452)
Q Consensus 195 i~~nF~~i~~~L~~~~~~l~~~~VDGILf 223 (452)
+++.=-+++..+++.. ...+|.|+=
T Consensus 99 i~gda~~l~~~l~e~~----gq~~D~viS 123 (194)
T COG3963 99 INGDAFDLRTTLGEHK----GQFFDSVIS 123 (194)
T ss_pred cccchhhHHHHHhhcC----CCeeeeEEe
Confidence 7877777877777653 124666553
No 397
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.72 E-value=67 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=37.5
Q ss_pred CEEEEEccCCChhHHHHHHhCCCCCEEE------EEeCCHHHHHHHHHHHhhhcc
Q 012954 135 TSFVDCTLGAAGHSSAIIRAHPELKLHI------GVDVDPSALAKARAHLNSLLH 183 (452)
Q Consensus 135 giyVDaTlG~GGHS~aIL~~~p~~g~Vi------gfDrD~~Ai~~Ak~rL~~~~~ 183 (452)
+.+||.| |-||-.-.+|.++.+.-.++ ++|.|..-...+.+||+.+..
T Consensus 101 DlivDlT-GlGG~~Pe~L~~fnp~vfiVEdP~gn~~D~~I~eyn~T~eRlea~ee 154 (254)
T COG4017 101 DLIVDLT-GLGGIEPEFLAKFNPKVFIVEDPKGNVFDVDIYEYNNTYERLEAFEE 154 (254)
T ss_pred eEEEecc-ccCCCCHHHHhccCCceEEEECCCCCCCccchhhcCCHHHHHHhhHh
Confidence 5789977 89999999999987643322 688888888888888887643
No 398
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.55 E-value=4.9e+02 Score=24.55 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=46.6
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchH---HHHHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHI---KSVLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i---~~~L~~~~~~l~~~ 216 (452)
|=|.||=-.++.+.+ ....+|+.+|++++.++...+.+..... ..++.++..+..+- ...+.+... ...
T Consensus 13 tGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g 85 (260)
T PRK07063 13 TGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----GARVLAVPADVTDAASVAAAVAAAEE--AFG 85 (260)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence 444444334444432 2234699999999988877766654211 12566676666544 344443211 123
Q ss_pred CccEEEEccCCC
Q 012954 217 GVDAILMDLGMS 228 (452)
Q Consensus 217 ~VDGILfDLGvS 228 (452)
.+|+++-+-|+.
T Consensus 86 ~id~li~~ag~~ 97 (260)
T PRK07063 86 PLDVLVNNAGIN 97 (260)
T ss_pred CCcEEEECCCcC
Confidence 699999998874
No 399
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=23.32 E-value=83 Score=32.49 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEee
Q 012954 346 LESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISF 368 (452)
...+|..+.++|+|||+|++-++
T Consensus 204 p~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 204 PLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEE
Confidence 45678888999999999998765
No 400
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=23.21 E-value=2e+02 Score=31.43 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=40.8
Q ss_pred chHHHHhhccCCCCCCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Q 012954 120 MLGEVLDVFSSSRTITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 120 Ll~Evl~~L~~~~~ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~ 176 (452)
-+.|++..+.+--+-..+||.-.|-| |-..+|+-.-+ -.|+|+|=+..+.++|+.
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G-~LSr~lSl~y~-lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQG-HLSRFLSLGYG-LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCch-HHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence 35677777764334568999999999 88888865323 369999999888888753
No 401
>PRK07774 short chain dehydrogenase; Provisional
Probab=23.16 E-value=5e+02 Score=24.15 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=44.4
Q ss_pred ccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 141 TLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 141 TlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
|-|.||=-.++.+.+ ..+..|+.+|+++...+...+.+.... .++..+..+..+..+ ++..... ...
T Consensus 12 tGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 82 (250)
T PRK07774 12 TGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-------GTAIAVQVDVSDPDSAKAMADATVS--AFG 82 (250)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHHHHHH--HhC
Confidence 444444444444332 123469999999887766655554321 145556666655443 2332211 013
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+|+..-|+.+
T Consensus 83 ~id~vi~~ag~~~ 95 (250)
T PRK07774 83 GIDYLVNNAAIYG 95 (250)
T ss_pred CCCEEEECCCCcC
Confidence 6999999999854
No 402
>PRK07109 short chain dehydrogenase; Provisional
Probab=23.15 E-value=4.4e+02 Score=26.73 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=47.0
Q ss_pred EEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 139 DCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 139 DaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
-+|-|-|-+....|.+. ..+|+.++++++.++...+.++..+. ++..+..+..+..++ +..... ..
T Consensus 15 Gas~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~-------~~~~v~~Dv~d~~~v~~~~~~~~~--~~ 83 (334)
T PRK07109 15 GASAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGG-------EALAVVADVADAEAVQAAADRAEE--EL 83 (334)
T ss_pred CCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-------cEEEEEecCCCHHHHHHHHHHHHH--HC
Confidence 33444444443333333 34689999999988877666665432 566666666554443 332211 01
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|.++.+=|++.
T Consensus 84 g~iD~lInnAg~~~ 97 (334)
T PRK07109 84 GPIDTWVNNAMVTV 97 (334)
T ss_pred CCCCEEEECCCcCC
Confidence 36999999888754
No 403
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.10 E-value=3.9e+02 Score=21.27 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=33.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHHhhhcccccccCccEEEEccCC
Q 012954 161 HIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 161 VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
|+-+|-|+...+..+..|+..+. ..+. ...+...+.+.+.. ..+|.|++|+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~------~~v~-~~~~~~~~~~~~~~-------~~~d~iiid~~~ 53 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGY------EEVT-TASSGEEALELLKK-------HPPDLIIIDLEL 53 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTE------EEEE-EESSHHHHHHHHHH-------STESEEEEESSS
T ss_pred cEEEECCHHHHHHHHHHHHhCCC------CEEE-EECCHHHHHHHhcc-------cCceEEEEEeee
Confidence 35679999999888888874321 1333 33445554444443 369999999443
No 404
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=22.99 E-value=1.5e+02 Score=29.61 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCEEEEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccC
Q 012954 134 ITSFVDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKN 198 (452)
Q Consensus 134 ggiyVDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~n 198 (452)
.+++-|.-.|.| --..+..+. ..+|||+.+||.--..|+++|.--+ ..+++++.+.
T Consensus 33 ~d~~~DLGaGsG-iLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gD 88 (252)
T COG4076 33 EDTFADLGAGSG-ILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGD 88 (252)
T ss_pred hhceeeccCCcc-hHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC------CcceEEEecc
Confidence 378888888887 333333344 3479999999999999988764322 2355555543
No 405
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=22.91 E-value=1.3e+02 Score=28.13 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 333 QALRIAVNDELKTLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 333 QALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
|.-.|.-|++| |..++.+|..+|+++|.+-|--.-.
T Consensus 93 ~~~~i~~nr~L--l~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 93 GKRNIRLNREL--LRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred hhHHHHHHHHH--HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34456678887 6999999999999999998876544
No 406
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=22.74 E-value=1.9e+02 Score=28.93 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCChhHHHHHHh---C-CCCCEEEEEeCCHHH--HHHHHHHHhhhccCCCCCCceEEEEc-cCcchHHHHHhhhcccccc
Q 012954 143 GAAGHSSAIIRA---H-PELKLHIGVDVDPSA--LAKARAHLNSLLHGQAHPHLKTHTFA-KNFRHIKSVLGQIDENILR 215 (452)
Q Consensus 143 G~GGHS~aIL~~---~-p~~g~VigfDrD~~A--i~~Ak~rL~~~~~~~~~~~~r~~li~-~nF~~i~~~L~~~~~~l~~ 215 (452)
|+.|-|++++-- + ..+++|.-||-||.= .+.++.-... + ....++.++. ..=..|++.+.+.. .
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~-~----~~~~~~~V~~~~e~~~l~~~~e~a~----~ 81 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRP-G----AWPDRIEVYEADELTILEDAYEAAE----A 81 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcccc-C----CCCCCeeEEeccchhhHHHHHHHHH----h
Confidence 666777766543 2 334679999999751 1222111111 0 0122344433 22334554544322 2
Q ss_pred cCccEEEEcc-CCCccC
Q 012954 216 SGVDAILMDL-GMSSMQ 231 (452)
Q Consensus 216 ~~VDGILfDL-GvSS~Q 231 (452)
.++|.||.|| |..|.=
T Consensus 82 ~~~d~VlvDleG~as~~ 98 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL 98 (231)
T ss_pred cCCCEEEEeCCCCCchh
Confidence 3689999999 887754
No 407
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=22.72 E-value=82 Score=30.28 Aligned_cols=62 Identities=29% Similarity=0.403 Sum_probs=35.0
Q ss_pred CccccchHHHH-hhccCCCCCC--EE--EEEccCCChhHHHHHHhC--CC----CCEEEEEeCCHHHHHHHHH
Q 012954 115 SHIPVMLGEVL-DVFSSSRTIT--SF--VDCTLGAAGHSSAIIRAH--PE----LKLHIGVDVDPSALAKARA 176 (452)
Q Consensus 115 ~H~PVLl~Evl-~~L~~~~~gg--iy--VDaTlG~GGHS~aIL~~~--p~----~g~VigfDrD~~Ai~~Ak~ 176 (452)
.|.-.|.++++ ..+....+++ .+ .-|--|.-=+|.|||=.- +. .-+++|.|+|+.||+.|++
T Consensus 10 ~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 10 EQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp THHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 46667778888 3442111112 23 344555556888887542 21 2379999999999999976
No 408
>PLN02672 methionine S-methyltransferase
Probab=22.44 E-value=1.8e+02 Score=35.20 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCeEEEEeecchhHHHHHHHHHh
Q 012954 340 NDELKTLESSLHACFDCLAPGGRLGVISFHSLEDRIVKQTFLS 382 (452)
Q Consensus 340 N~EL~~L~~~L~~a~~~L~pGGRLvVISFHSLEDRIVK~~F~~ 382 (452)
.|=|+-.++.+..+.++|+|||.+++=.=+.-.+.+.++.|..
T Consensus 251 ~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 251 QFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER 293 (1082)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH
Confidence 5678889999999999999999888655555555555467765
No 409
>PRK07832 short chain dehydrogenase; Provisional
Probab=22.30 E-value=5.1e+02 Score=24.83 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=43.7
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhccccccc
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILRS 216 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~~ 216 (452)
+|=|-|.+-...|.+.+ ..|+.++++++.++...+.+...+. .....+..+..+ +.+++.+... ...
T Consensus 8 as~giG~~la~~la~~G--~~vv~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 77 (272)
T PRK07832 8 AASGIGRATALRLAAQG--AELFLTDRDADGLAQTVADARALGG------TVPEHRALDISDYDAVAAFAADIHA--AHG 77 (272)
T ss_pred CCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCC------CcceEEEeeCCCHHHHHHHHHHHHH--hcC
Confidence 34444444444444433 4689999999888766555544321 122233444444 3333333211 123
Q ss_pred CccEEEEccCCCcc
Q 012954 217 GVDAILMDLGMSSM 230 (452)
Q Consensus 217 ~VDGILfDLGvSS~ 230 (452)
.+|+++..-|+...
T Consensus 78 ~id~lv~~ag~~~~ 91 (272)
T PRK07832 78 SMDVVMNIAGISAW 91 (272)
T ss_pred CCCEEEECCCCCCC
Confidence 69999999997643
No 410
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.25 E-value=4.2e+02 Score=25.06 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=37.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---HhhhcccccccCccEEEEccCCCc
Q 012954 159 KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 159 g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~~VDGILfDLGvSS 229 (452)
..|+++|++++.++...+.+. . .++++++.++.+..++ +...... ....+|+++-.-|+..
T Consensus 26 ~~V~~~~r~~~~~~~~~~~~~---~------~~~~~~~~D~~~~~~v~~~~~~~~~~-~~~~id~vi~~ag~~~ 89 (260)
T PRK08267 26 WRVGAYDINEAGLAALAAELG---A------GNAWTGALDVTDRAAWDAALADFAAA-TGGRLDVLFNNAGILR 89 (260)
T ss_pred CeEEEEeCCHHHHHHHHHHhc---C------CceEEEEecCCCHHHHHHHHHHHHHH-cCCCCCEEEECCCCCC
Confidence 469999999987766544332 1 2566777776665543 3322100 0246999999999865
No 411
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=22.25 E-value=80 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 346 LESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
...+|..+.++|+|||++++...++
T Consensus 109 ~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 109 HLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCCC
Confidence 4567888889999999998865444
No 412
>PLN02540 methylenetetrahydrofolate reductase
Probab=22.11 E-value=2.1e+02 Score=32.34 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHhhccCCCCCCEEEEEccCCChh----HHHHHHhC------CCCCEEEEEeCCHHHHHHHHHHHhhhc
Q 012954 123 EVLDVFSSSRTITSFVDCTLGAAGH----SSAIIRAH------PELKLHIGVDVDPSALAKARAHLNSLL 182 (452)
Q Consensus 123 Evl~~L~~~~~ggiyVDaTlG~GGH----S~aIL~~~------p~~g~VigfDrD~~Ai~~Ak~rL~~~~ 182 (452)
+.++.|.. -+-.|||.|.|+||. |.++...+ +..-++-+.|+...+|+.+-..+...+
T Consensus 19 ~~~~rl~~--~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~G 86 (565)
T PLN02540 19 ERMDRMVA--HGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNG 86 (565)
T ss_pred HHHHHHhc--cCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCC
Confidence 45566653 345899999999995 44443321 334578889999888887765555543
No 413
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=22.04 E-value=82 Score=30.59 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=27.1
Q ss_pred CHHHHHhcCChHHHHHHHHHh-CCCcchHHHHHHHHHH
Q 012954 258 KAEDILNSWPDAEVGRVLREY-GEESNWHLLQNKIVQA 294 (452)
Q Consensus 258 tAadiLN~~se~eL~~Ifr~Y-GEE~~A~rIA~aIv~~ 294 (452)
|++++| ++|.++.+.| |+++.|.+|.+.||+-
T Consensus 34 tsselL-----D~ly~l~K~~t~~kkeA~ki~KniIKi 66 (186)
T PF05527_consen 34 TSSELL-----DELYRLLKEYTGNKKEAEKIIKNIIKI 66 (186)
T ss_dssp HHHHHH-----HHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hHHHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678886 6899999999 8999999999998874
No 414
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=78 Score=33.09 Aligned_cols=41 Identities=37% Similarity=0.473 Sum_probs=31.2
Q ss_pred hHHHHH-HHHHHHHHhhcCCCeEEEE--eecchhHHHHHHHHHh
Q 012954 342 ELKTLE-SSLHACFDCLAPGGRLGVI--SFHSLEDRIVKQTFLS 382 (452)
Q Consensus 342 EL~~L~-~~L~~a~~~L~pGGRLvVI--SFHSLEDRIVK~~F~~ 382 (452)
+|..|+ +.|..|.++|+|||+|+-- |.|..|..-|=..|.+
T Consensus 262 ~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~ 305 (355)
T COG0144 262 ELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLE 305 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHH
Confidence 444544 5677889999999999864 6899998877766654
No 415
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.94 E-value=5e+02 Score=24.02 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=46.2
Q ss_pred EEEccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHHH---hhhccccc
Q 012954 138 VDCTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSVL---GQIDENIL 214 (452)
Q Consensus 138 VDaTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~L---~~~~~~l~ 214 (452)
+-+|=|-|.+-...|.+.+ ..|++++++++.++.....+.. + .++.++..+..+..++- .+... .
T Consensus 11 tGasg~iG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~-~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~ 78 (251)
T PRK07231 11 TGASSGIGEGIARRFAAEG--ARVVVTDRNEEAAERVAAEILA-G-------GRAIAVAADVSDEADVEAAVAAALE--R 78 (251)
T ss_pred ECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhc-C-------CeEEEEECCCCCHHHHHHHHHHHHH--H
Confidence 3444445544444443333 3599999999777655554432 1 25667777777665543 22110 1
Q ss_pred ccCccEEEEccCCCc
Q 012954 215 RSGVDAILMDLGMSS 229 (452)
Q Consensus 215 ~~~VDGILfDLGvSS 229 (452)
...+|+|+..-|++.
T Consensus 79 ~~~~d~vi~~ag~~~ 93 (251)
T PRK07231 79 FGSVDILVNNAGTTH 93 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 136999999988753
No 416
>PF13155 Toprim_2: Toprim-like
Probab=21.86 E-value=2.5e+02 Score=22.82 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhh
Q 012954 149 SAIIRAHPELKLHIGVDVDPSALAKARAHLNSL 181 (452)
Q Consensus 149 ~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~ 181 (452)
..+|+..+....++++|-|..-.+.+++..+.+
T Consensus 39 ~~~l~~~~~~~i~l~~DnD~aG~~~~~~~~~~l 71 (96)
T PF13155_consen 39 IKFLKENPYKKIVLAFDNDEAGRKAAEKLQKEL 71 (96)
T ss_pred HHHHHhCCCCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 456655555567999999998888877654443
No 417
>PF14350 Beta_protein: Beta protein
Probab=21.79 E-value=3.7e+02 Score=27.53 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=41.9
Q ss_pred cCCChhHHH-HHHh---CCC-CCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcc------hHHHHHhhhc
Q 012954 142 LGAAGHSSA-IIRA---HPE-LKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFR------HIKSVLGQID 210 (452)
Q Consensus 142 lG~GGHS~a-IL~~---~p~-~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~------~i~~~L~~~~ 210 (452)
...|.|-.. +++. ++. .-=|+++|.+.+.+.......+.... ..-+.+-...+. .|..++...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iPVi~l~~~~~~~~~v~~~~~~~~~-----~iaiRl~~~~~~~~~~~~~i~~i~~~l~ 150 (347)
T PF14350_consen 76 LDSGNHPLNYWIDFLSRLGNQIIPVIGLDRSDDYLRAVRSIARRNGG-----GIAIRLRPDDLDDDDFPSEISRILAALG 150 (347)
T ss_pred ccccchHHHHHHHHHHHcCCeEEEEEecCCcHHHHHHHHHHHHhcCC-----eEEEEeecccccchhHHHHHHHHHHHcC
Confidence 455556555 4443 332 11389999999877776665533321 112222233332 2555555443
Q ss_pred ccccccCccEEEEccCCCc
Q 012954 211 ENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 211 ~~l~~~~VDGILfDLGvSS 229 (452)
+....+| ||+|||.-+
T Consensus 151 --~~~~~~~-lilD~~~i~ 166 (347)
T PF14350_consen 151 --LSPNEVD-LILDLGDIR 166 (347)
T ss_pred --CCccceE-EEEECCccC
Confidence 1123454 899999644
No 418
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=1e+02 Score=35.58 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCCeEEEEeecc
Q 012954 341 DELKTLESSLHACFDCLAPGGRLGVISFHS 370 (452)
Q Consensus 341 ~EL~~L~~~L~~a~~~L~pGGRLvVISFHS 370 (452)
.||+.|+..|..+.++|-+..++.+|||-+
T Consensus 135 eeL~~LkssL~~~l~lLP~~alvGlItfg~ 164 (745)
T KOG1986|consen 135 EELQALKSSLKQSLSLLPENALVGLITFGT 164 (745)
T ss_pred HHHHHHHHHHHHHHhhCCCcceEEEEEecc
Confidence 799999999999999999999999999965
No 419
>PRK07326 short chain dehydrogenase; Provisional
Probab=21.70 E-value=5.3e+02 Score=23.78 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=34.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccccCccEEEEccCC
Q 012954 159 KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 159 g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~~VDGILfDLGv 227 (452)
..|+++|+++.......+.+... .+++.+..+..+... .+++... ....+|+|+..-|.
T Consensus 31 ~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~~d~vi~~ag~ 92 (237)
T PRK07326 31 YKVAITARDQKELEEAAAELNNK--------GNVLGLAADVRDEADVQRAVDAIVA--AFGGLDVLIANAGV 92 (237)
T ss_pred CEEEEeeCCHHHHHHHHHHHhcc--------CcEEEEEccCCCHHHHHHHHHHHHH--HcCCCCEEEECCCC
Confidence 36999999998776555444321 146666666554443 3433211 01368988877665
No 420
>PRK11524 putative methyltransferase; Provisional
Probab=21.40 E-value=1e+02 Score=30.81 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEE
Q 012954 346 LESSLHACFDCLAPGGRLGVI 366 (452)
Q Consensus 346 L~~~L~~a~~~L~pGGRLvVI 366 (452)
|+..|..+..+|+|||.++|+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 688999999999999999985
No 421
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.91 E-value=5.9e+02 Score=24.36 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=35.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcch---HHHHHhhhcccccccCccEEEEccCC
Q 012954 159 KLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRH---IKSVLGQIDENILRSGVDAILMDLGM 227 (452)
Q Consensus 159 g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~---i~~~L~~~~~~l~~~~VDGILfDLGv 227 (452)
..|+++|++++.++...+.+..... ++.++..+..+ +...+.+... ....+|+++.+-|.
T Consensus 34 ~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~i~~~~~~~~~--~~~~iD~vi~~ag~ 96 (264)
T PRK07576 34 ANVAVASRSQEKVDAAVAQLQQAGP-------EGLGVSADVRDYAAVEAAFAQIAD--EFGPIDVLVSGAAG 96 (264)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCC-------ceEEEECCCCCHHHHHHHHHHHHH--HcCCCCEEEECCCC
Confidence 4699999998877665555544321 34555555544 3344443211 01369999988774
No 422
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.86 E-value=6.4e+02 Score=23.16 Aligned_cols=79 Identities=6% Similarity=0.017 Sum_probs=43.2
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeC-CHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDV-DPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDr-D~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~ 215 (452)
+|=|-|.|....|.+.+ ..|+++.+ ++...+...+.+...+ .++.++..++.+... ++.+... ..
T Consensus 8 ~sg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 76 (242)
T TIGR01829 8 GMGGIGTAICQRLAKDG--YRVAANCGPNEERAEAWLQEQGALG-------FDFRVVEGDVSSFESCKAAVAKVEA--EL 76 (242)
T ss_pred CCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhhC-------CceEEEEecCCCHHHHHHHHHHHHH--Hc
Confidence 34444544444443333 35888888 7666554433333221 256777777776443 3332211 02
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+|+.+-|++.
T Consensus 77 ~~id~vi~~ag~~~ 90 (242)
T TIGR01829 77 GPIDVLVNNAGITR 90 (242)
T ss_pred CCCcEEEECCCCCC
Confidence 36999999998753
No 423
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.82 E-value=5.4e+02 Score=23.70 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=47.9
Q ss_pred EEEEccCCChhHHHHHHhCCCCCEEEEE-eCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccc
Q 012954 137 FVDCTLGAAGHSSAIIRAHPELKLHIGV-DVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDEN 212 (452)
Q Consensus 137 yVDaTlG~GGHS~aIL~~~p~~g~Vigf-DrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~ 212 (452)
++-+|-|-|-+....|.+.+ ..++.+ +++++..+...+.+...+ .++.++..++.+...+ +.....
T Consensus 10 I~Gasg~iG~~la~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~- 79 (247)
T PRK05565 10 VTGASGGIGRAIAELLAKEG--AKVVIAYDINEEAAQELLEEIKEEG-------GDAIAVKADVSSEEDVENLVEQIVE- 79 (247)
T ss_pred EeCCCcHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHHHH-
Confidence 34445555545444443333 357787 999888766655554421 2577788888766544 332210
Q ss_pred ccccCccEEEEccCCC
Q 012954 213 ILRSGVDAILMDLGMS 228 (452)
Q Consensus 213 l~~~~VDGILfDLGvS 228 (452)
....+|+|+..-|+.
T Consensus 80 -~~~~id~vi~~ag~~ 94 (247)
T PRK05565 80 -KFGKIDILVNNAGIS 94 (247)
T ss_pred -HhCCCCEEEECCCcC
Confidence 013699999999886
No 424
>PRK05650 short chain dehydrogenase; Provisional
Probab=20.80 E-value=6e+02 Score=24.22 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=45.6
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHH---HHhhhccccccc
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKS---VLGQIDENILRS 216 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~---~L~~~~~~l~~~ 216 (452)
+|=|-|-+...-|.+. ..+|+..|++.+.++.+.+.+...+ .++.++..++.+..+ ++..... ...
T Consensus 8 asggIG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~i~~--~~~ 76 (270)
T PRK05650 8 AASGLGRAIALRWARE--GWRLALADVNEEGGEETLKLLREAG-------GDGFYQRCDVRDYSQLTALAQACEE--KWG 76 (270)
T ss_pred CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 3444444433333332 3468999999888776665555432 256667777765543 3332211 123
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++.+-|+..
T Consensus 77 ~id~lI~~ag~~~ 89 (270)
T PRK05650 77 GIDVIVNNAGVAS 89 (270)
T ss_pred CCCEEEECCCCCC
Confidence 6999999988754
No 425
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=20.69 E-value=6.4e+02 Score=23.77 Aligned_cols=79 Identities=9% Similarity=0.033 Sum_probs=45.9
Q ss_pred EccCCChhHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhccccccc
Q 012954 140 CTLGAAGHSSAIIRAHPELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILRS 216 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~~ 216 (452)
+|=|-|-|...-|.+.+ ..++.+|++.+.++...+.+...+ .++.++..++.+.+++ +..... ...
T Consensus 19 ~s~gIG~~la~~l~~~G--~~vv~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~i~~~~~~~~~--~~~ 87 (255)
T PRK06113 19 AGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLG-------GQAFACRCDITSEQELSALADFALS--KLG 87 (255)
T ss_pred CCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 33344444444444333 358899999888876655555432 2566677777765544 222210 013
Q ss_pred CccEEEEccCCCc
Q 012954 217 GVDAILMDLGMSS 229 (452)
Q Consensus 217 ~VDGILfDLGvSS 229 (452)
.+|+++..-|+..
T Consensus 88 ~~d~li~~ag~~~ 100 (255)
T PRK06113 88 KVDILVNNAGGGG 100 (255)
T ss_pred CCCEEEECCCCCC
Confidence 6999999988753
No 426
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.36 E-value=53 Score=26.91 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.9
Q ss_pred hcCCCeEEEEeecchhH
Q 012954 357 LAPGGRLGVISFHSLED 373 (452)
Q Consensus 357 L~pGGRLvVISFHSLED 373 (452)
-.|.|+.+++.||+-||
T Consensus 34 kHp~~~~vtVP~Hp~~d 50 (66)
T COG1724 34 KHPDGGRVTVPFHPGED 50 (66)
T ss_pred EcCCCCEEEecCCCccc
Confidence 45889999999999888
No 427
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.29 E-value=6.1e+02 Score=23.20 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=46.4
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|-|.||=-..+.+.+ .....|+++++++...+.....++..+ .++.++..++.+..++ +.+... ..
T Consensus 10 ItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 80 (246)
T PRK05653 10 VTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG-------GEARVLVFDVSDEAAVRALIEAAVE--AF 80 (246)
T ss_pred EECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC-------CceEEEEccCCCHHHHHHHHHHHHH--Hh
Confidence 3545555445554442 122358999999887766555554332 2567777777665433 333211 01
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|+|+..-|+..
T Consensus 81 ~~id~vi~~ag~~~ 94 (246)
T PRK05653 81 GALDILVNNAGITR 94 (246)
T ss_pred CCCCEEEECCCcCC
Confidence 35899998887543
No 428
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.21 E-value=1.3e+02 Score=30.65 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=38.0
Q ss_pred cHHHHHHHHHhhCCCCcCCCCCccchhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCeEEEEee
Q 012954 302 STGELVDLIQSVTPGMRGRRQGWIKTATRVFQALRIAVNDELKTLESSLHACFDCLAPGGRLGVISF 368 (452)
Q Consensus 302 TT~eLa~iI~~~~p~~~~~~~~~~hpATR~FQALRI~VN~EL~~L~~~L~~a~~~L~pGGRLvVISF 368 (452)
+|.|+.++|... =.++++| |-.+|+++.++++.+.+.|+.||||.++--
T Consensus 17 ~~~~~~~~~~~~--------------d~~~~~a----v~~~l~~I~~av~~~~~~l~~gGrl~~~G~ 65 (291)
T TIGR00274 17 STLEIVRLINEE--------------DKLVPLA----IESVLPDIAAAVEQIVQAFQQGGRLIYIGA 65 (291)
T ss_pred CHHHHHHHHHHH--------------HHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 567777777543 1455655 557889999999999999999999998864
No 429
>PRK08278 short chain dehydrogenase; Provisional
Probab=20.16 E-value=5.8e+02 Score=24.60 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=43.3
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHH-------HHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhh
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSA-------LAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQ 208 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~A-------i~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~ 208 (452)
.|=|.||=-.+|.+.+ .....|+.+|++.+. ++.+.+.+...+ .++..+..+..+..++ +.+
T Consensus 11 ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 11 ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG-------GQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC-------CceEEEEecCCCHHHHHHHHHH
Confidence 4545554444444432 122368999997642 333334444332 2566777776655443 332
Q ss_pred hcccccccCccEEEEccCCCc
Q 012954 209 IDENILRSGVDAILMDLGMSS 229 (452)
Q Consensus 209 ~~~~l~~~~VDGILfDLGvSS 229 (452)
... ....+|+++.+-|+..
T Consensus 84 ~~~--~~g~id~li~~ag~~~ 102 (273)
T PRK08278 84 AVE--RFGGIDICVNNASAIN 102 (273)
T ss_pred HHH--HhCCCCEEEECCCCcC
Confidence 211 0136999999999764
No 430
>PRK05854 short chain dehydrogenase; Provisional
Probab=20.07 E-value=6.6e+02 Score=25.02 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=48.4
Q ss_pred EccCCChhHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHHHhhhccCCCCCCceEEEEccCcchHHHH---Hhhhcccccc
Q 012954 140 CTLGAAGHSSAIIRAH-PELKLHIGVDVDPSALAKARAHLNSLLHGQAHPHLKTHTFAKNFRHIKSV---LGQIDENILR 215 (452)
Q Consensus 140 aTlG~GGHS~aIL~~~-p~~g~VigfDrD~~Ai~~Ak~rL~~~~~~~~~~~~r~~li~~nF~~i~~~---L~~~~~~l~~ 215 (452)
.|=|+||=-.++.+.+ ..+.+|+..+++.+..+.+.+.+..... ..++.++..+..+.+++ ..+... ..
T Consensus 19 ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----~~~v~~~~~Dl~d~~sv~~~~~~~~~--~~ 91 (313)
T PRK05854 19 VTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----DAKLSLRALDLSSLASVAALGEQLRA--EG 91 (313)
T ss_pred EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCceEEEEecCCCHHHHHHHHHHHHH--hC
Confidence 4555555445554442 2234799999998877766665644211 12566666666655544 333211 12
Q ss_pred cCccEEEEccCCCc
Q 012954 216 SGVDAILMDLGMSS 229 (452)
Q Consensus 216 ~~VDGILfDLGvSS 229 (452)
..+|.++.+=|+.+
T Consensus 92 ~~iD~li~nAG~~~ 105 (313)
T PRK05854 92 RPIHLLINNAGVMT 105 (313)
T ss_pred CCccEEEECCcccc
Confidence 36999999999854
Done!