BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012955
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
GLITP++ +A + ++ L KAR +LQPHE+ GTFT+SNLGMFG+ F A
Sbjct: 111 AGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA 170
Query: 412 ILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVSL 448
I+ P Q I+A+GAS+ +V AD + F V S M V+L
Sbjct: 171 IINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTL 208
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 148/382 (38%), Gaps = 16/382 (4%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
E +P + + EG+IV W GD +++ + + V++DKA +++ + G + I+VPE
Sbjct: 4 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 120 GESAPVGAAIGILXXXXXXXXXXXXXXXXXXXXXXXSHXXXXXXXXXXXXXXXXXXXESA 179
G A VG + + A
Sbjct: 64 GTVATVGQTL--ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 180 PSGP-RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXX 238
+GP R+ +A P +K ++ VDI V GTG GR+ ED++
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID---AFLAGGAKPAPAAA 178
Query: 239 XXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
T + ++ A++K M+ S + P + L A
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238
Query: 298 YEKVK----PKGVTMTXX--XXXXXXXXXVQHPVVNASCKD-GKSFTYXXXXXXXXXXXX 350
+K K KG+ +T ++PV+N S D +
Sbjct: 239 RKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADT 298
Query: 351 XGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
GL+ PV++ AD+ ++ L+Q+ EL EKAR +L P E + T++N+G G F
Sbjct: 299 DRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFT 358
Query: 411 AILPPGQGAIMAVG--ASKPTV 430
++ + AI+ +G A KP V
Sbjct: 359 PVINHPEVAILGIGRIAEKPIV 380
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
+I MP+LS TM EG IV W+K EG+ +S G+++ +E+DKA + ++ DGILA IVV E
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 120 G-ESAPVGAAIGIL 132
G ++ +G+ IG++
Sbjct: 65 GSKNIRLGSLIGLI 78
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P A+ +L++H +D + TGP G T ED K
Sbjct: 132 SPAARNILEKHSLDASQGTATGPRGIFTKEDALK 165
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120
I MP+LS TM EG IV W+K EG+ +S G+++ +E+DKA + ++ DGILA IVV EG
Sbjct: 10 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69
Query: 121 -ESAPVGAAIGIL 132
++ +G+ IG++
Sbjct: 70 SKNIRLGSLIGLI 82
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 322 QHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEKA 381
++P VNAS DG Y GL+TPVL+D D L + + +K KEL K
Sbjct: 76 RYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKG 134
Query: 382 RSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
R +L + G FT++N G+FG I+ P Q AI+ + A K
Sbjct: 135 RDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK 180
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
++ +PALS TMT G + W K G+ LS+G+ + +E+DKA + E +G LA I+VPE
Sbjct: 29 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88
Query: 120 G-ESAPVGAAIGIL 132
G P+G + I+
Sbjct: 89 GTRDVPLGTPLCII 102
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
++ +PALS TMT G + W K G+ LS+G+ + +E+DKA + E +G LA I+VPE
Sbjct: 11 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 70
Query: 120 G-ESAPVGAAIGIL 132
G P+G + I+
Sbjct: 71 GTRDVPLGTPLCII 84
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
++ +PALS TMT G + W K G+ LS+G+ + +E+D A + E +G LA I+VPE
Sbjct: 7 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66
Query: 120 G-ESAPVGAAIGIL 132
G P+G + I+
Sbjct: 67 GTRDVPLGTPLCII 80
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
GL+ PV+ DA + L+ + EL+ AR L P E TFT+SN G GVD +
Sbjct: 115 GLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPV 174
Query: 413 LPPGQGAIMAVGASKP 428
+ + AI+ +GA KP
Sbjct: 175 INHPEAAILGLGAIKP 190
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 322 QHPVVNASCKD-GKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEK 380
++PV+N S D + GL+ PV++ AD+ ++ L+Q+ EL EK
Sbjct: 85 EYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEK 144
Query: 381 ARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVG--ASKPTV 430
AR +L P E + T++N+G G F ++ + AI+ +G A KP V
Sbjct: 145 ARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV 196
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
+++ +P+LS TM G I W K EGD +++G+ + VE+DKA + E+ + +A I+V
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 119 EG-ESAPVGAAIGI 131
EG P+GA I I
Sbjct: 68 EGTRDVPIGAIICI 81
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 262 PFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP----KGVTMTXX--XXXX 315
P A+ K M +L +P F + L L E++KP +G+ ++
Sbjct: 35 PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKA 94
Query: 316 XXXXXVQHPVVNASC-KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKW 374
+Q P++NAS ++ ++ TY GLI P +++ ++ ++ +
Sbjct: 95 ASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATEL 154
Query: 375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
L + + QL ++ GTFTLSN+G G ++ P + AI A+G K
Sbjct: 155 NRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIK 207
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
E +P + +TEG+IV W EGD++ K + +V V +DK + + + G + I+ E
Sbjct: 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 120 GESAPVGAAI 129
G+ PVG+ +
Sbjct: 63 GQVVPVGSTL 72
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 354 LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL 413
L PV+++AD+ + ++++ EL KAR+ +L + GTFT+++ G FG + I+
Sbjct: 121 LYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGII 180
Query: 414 PPGQGAIMAVGA--SKPTVVAD 433
Q AI+ V + +P ++ D
Sbjct: 181 NHPQAAILQVESIVKRPVIIDD 202
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
+I P ++ +G + +W K G+ + + E +V +E+DK M+V DG++A IV E
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 120 GESAPVGAAIGIL 132
G++ G +G L
Sbjct: 63 GDTVLSGELLGKL 75
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
+I +P L ++ + + +W K GD + + E +V +E+DK ++V DGIL A++ E
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 120 G 120
G
Sbjct: 64 G 64
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 182 GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
G R+ A P A++L K+ +D++ V GTGP G IT EDV++ A
Sbjct: 1 GSREVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYA 43
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
E +P + + EG+IV W GD +++ + + V++DKA +++ + G + I+VPE
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 120 GESAPVGAAI 129
G A VG +
Sbjct: 63 GTVATVGQTL 72
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 182 GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
G R+ A P A++L K+ +D + V GTGP G IT EDV++ A
Sbjct: 1 GSREVAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRWA 43
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P ++LL +H +D +++ GTG GR+T EDVEK
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEK 46
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226
A P ++L ++ VD+ + GTG GRIT EDV +AAG+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAGL 40
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P ++LL +H +D +++ GTG GR+T EDVEK
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEK 42
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P ++LL +H +D +++ GTG GR+T EDVEK
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEK 42
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P ++LL +H +D +++ GTG GR+T EDVEK
Sbjct: 3 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEK 36
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV 220
RKT+ATP ++L ++ + ++ VVG+G GRI ED+
Sbjct: 14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDI 50
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 300 KVKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKS-FTYXXXXXXXXXXXXXGGLITPV 358
K + + VT+T Q+P +NA + + + GL V
Sbjct: 51 KARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110
Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
++DAD+ + +S + + +AR +LQ E TFT++N+G G
Sbjct: 111 IKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIG 157
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV 220
RKT+ATP ++L ++ + ++ VVG+G GRI ED+
Sbjct: 6 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDI 42
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV 220
RKT+ATP + L ++ + ++ VVG+G GRI ED+
Sbjct: 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDI 42
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 179 APSGP-RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
A +GP R+ +A P +K ++ VDI V GTG GR+ ED++
Sbjct: 5 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 48
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 181 SGP-RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
+GP R+ +A P +K ++ VDI V GTG GR+ ED++
Sbjct: 1 AGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 42
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 53 IVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGIL 112
+VQ K+ +I T+ E W EGD +S+ +S+ V+SDKA + + + YDG++
Sbjct: 4 VVQFKLSDIGEGIREVTVKE-----WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVI 58
Query: 113 AAIVVPEGESAPVG 126
+ + A VG
Sbjct: 59 KKLYYNLDDIAYVG 72
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
R+ +A P +K ++ VDI V GTG GR+ ED++
Sbjct: 4 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 41
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
R+ +A P +K ++ VDI V GTG GR+ ED++
Sbjct: 4 RRVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDID 41
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P ++LL + +D +++ GTG GR+T EDVEK
Sbjct: 9 SPAIRRLLAEWNLDASAIKGTGVGGRLTREDVEK 42
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
+A P A+KL ++ + I V G+GP GR+ EDV A
Sbjct: 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
GL+ PV+++ D+ L L+ + EL EKARSK+L FT+S+LG G F I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGF 437
+ + AI+ V + V D F
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKAF 202
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
GL+ PV+++ D+ L L+ + EL EKARSK+L FT+S+LG G F I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGF 437
+ + AI+ V + V D F
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKAF 202
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
GL+ PV+++ D+ L L+ + EL EKARSK+L FT+S+LG G F I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGF 437
+ + AI+ V + V D F
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKAF 202
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
GL+ PV+++ D+ L L+ + EL EKARSK+L FT+++LG G F I
Sbjct: 118 GLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPI 177
Query: 413 LPPGQGAIMAVGASKPTVVADADGF 437
+ + AI+ V + V D F
Sbjct: 178 VNAPEVAILGVSKASMQPVWDGKAF 202
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVG 126
GK++ + GD + G+ ++V+E+ K + ++ + DG++ I+V EGE+ G
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTG 67
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA 425
++++V +AR +L +++ T +L+N G G L GQGAI+ GA
Sbjct: 117 YEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGA 168
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 31.6 bits (70), Expect = 0.84, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
+A P +K ++ VDI V GTG GR+ ED++
Sbjct: 1 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 35
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
+A P +K ++ VDI V GTG GR+ ED++
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 36
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
+A P +K ++ VDI V GTG GR+ ED++
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID 36
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+P A+ +L++H +D + TGP G T ED K
Sbjct: 13 SPAARNILEKHSLDASQGTATGPRGIFTKEDALK 46
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
+A P A++L+++ V V GTG GRI EDV +
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMR 36
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI 129
+G+++ + GD++ + +VV+ES KA M+V + G++ ++ V G+ G AI
Sbjct: 12 DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,316,696
Number of Sequences: 62578
Number of extensions: 301092
Number of successful extensions: 838
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 57
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)