Query 012955
Match_columns 452
No_of_seqs 254 out of 2067
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05704 dihydrolipoamide succ 100.0 3E-84 6.5E-89 670.6 41.1 367 58-450 2-376 (407)
2 TIGR01347 sucB 2-oxoglutarate 100.0 2.2E-83 4.8E-88 662.9 42.8 364 59-450 1-372 (403)
3 TIGR02927 SucB_Actino 2-oxoglu 100.0 2.9E-83 6.3E-88 690.8 41.8 394 57-450 134-558 (590)
4 PLN02744 dihydrolipoyllysine-r 100.0 6.7E-83 1.5E-87 674.2 40.8 382 56-450 110-510 (539)
5 KOG0557 Dihydrolipoamide acety 100.0 2.2E-83 4.8E-88 649.4 32.4 392 55-450 35-441 (470)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 4.1E-81 8.9E-86 652.6 40.9 385 60-450 1-406 (435)
7 TIGR01348 PDHac_trf_long pyruv 100.0 5.7E-81 1.2E-85 668.2 41.5 385 58-450 116-517 (546)
8 PLN02528 2-oxoisovalerate dehy 100.0 8E-81 1.7E-85 647.1 40.3 374 61-450 1-384 (416)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 2E-78 4.4E-83 626.6 34.7 366 57-450 1-374 (404)
10 PRK11854 aceF pyruvate dehydro 100.0 2E-75 4.3E-80 635.8 43.0 383 57-450 205-604 (633)
11 PLN02226 2-oxoglutarate dehydr 100.0 4.3E-74 9.4E-79 596.3 37.0 336 56-450 89-432 (463)
12 PRK11855 dihydrolipoamide acet 100.0 8.2E-73 1.8E-77 607.1 42.3 387 57-450 118-518 (547)
13 PTZ00144 dihydrolipoamide succ 100.0 1.2E-72 2.6E-77 581.8 36.5 368 20-450 12-387 (418)
14 PRK11856 branched-chain alpha- 100.0 1.5E-71 3.3E-76 579.3 41.8 375 58-450 2-381 (411)
15 KOG0558 Dihydrolipoamide trans 100.0 1.5E-69 3.3E-74 527.5 22.5 372 54-450 60-442 (474)
16 PRK11857 dihydrolipoamide acet 100.0 4.3E-65 9.4E-70 509.1 28.4 262 186-450 2-276 (306)
17 PRK14843 dihydrolipoamide acet 100.0 4.2E-65 9E-70 517.2 28.6 263 184-450 47-318 (347)
18 KOG0559 Dihydrolipoamide succi 100.0 3E-65 6.6E-70 499.7 18.1 340 56-450 70-426 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 3.4E-53 7.3E-58 409.2 20.7 193 257-450 3-202 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 2.4E-44 5.1E-49 389.3 21.9 193 258-450 115-327 (1228)
21 PRK14875 acetoin dehydrogenase 99.8 2.7E-18 5.9E-23 174.4 12.5 120 58-220 2-121 (371)
22 PF00364 Biotin_lipoyl: Biotin 99.8 1.9E-18 4.1E-23 138.3 8.0 74 59-132 1-74 (74)
23 PRK06748 hypothetical protein; 99.7 7.4E-16 1.6E-20 125.3 10.4 62 73-134 13-75 (83)
24 PRK11892 pyruvate dehydrogenas 99.6 2.4E-14 5.2E-19 151.3 19.0 79 59-137 3-82 (464)
25 PRK05889 putative acetyl-CoA c 99.6 1.4E-14 3.1E-19 114.8 9.5 61 73-133 11-71 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.5 7.2E-14 1.6E-18 110.9 9.9 72 61-132 2-73 (73)
27 COG0511 AccB Biotin carboxyl c 99.5 7.8E-14 1.7E-18 125.0 8.6 61 73-133 79-139 (140)
28 PRK11854 aceF pyruvate dehydro 99.5 1.4E-13 3.1E-18 151.0 11.1 75 59-135 3-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.5 2.6E-13 5.7E-18 107.1 8.8 61 73-133 10-70 (70)
30 TIGR02927 SucB_Actino 2-oxoglu 99.4 3.5E-13 7.5E-18 146.6 10.5 77 59-135 3-79 (590)
31 PRK06549 acetyl-CoA carboxylas 99.4 2.1E-12 4.6E-17 113.9 9.2 60 73-132 70-129 (130)
32 PF02817 E3_binding: e3 bindin 99.4 5.2E-13 1.1E-17 93.3 3.7 38 185-222 2-39 (39)
33 PRK11855 dihydrolipoamide acet 99.3 3E-12 6.5E-17 138.6 10.7 78 59-137 3-80 (547)
34 PRK07051 hypothetical protein; 99.3 1.1E-11 2.4E-16 100.6 10.1 69 59-133 4-79 (80)
35 PRK05641 putative acetyl-CoA c 99.3 5.2E-12 1.1E-16 114.6 9.0 60 73-132 93-152 (153)
36 PLN02983 biotin carboxyl carri 99.3 1.9E-11 4.2E-16 118.2 12.7 61 73-133 206-273 (274)
37 TIGR01348 PDHac_trf_long pyruv 99.3 7.3E-12 1.6E-16 135.3 9.9 75 60-135 2-76 (546)
38 cd06850 biotinyl_domain The bi 99.3 2.3E-11 5.1E-16 93.8 9.2 61 72-132 7-67 (67)
39 TIGR00531 BCCP acetyl-CoA carb 99.2 1.9E-11 4.2E-16 111.5 8.3 61 73-133 89-156 (156)
40 PRK14042 pyruvate carboxylase 99.2 4.2E-11 9.1E-16 129.8 10.9 62 73-134 534-595 (596)
41 PRK06302 acetyl-CoA carboxylas 99.2 6E-11 1.3E-15 108.2 8.6 61 73-133 88-155 (155)
42 cd06849 lipoyl_domain Lipoyl d 99.2 2.9E-10 6.3E-15 87.5 11.1 73 60-132 2-74 (74)
43 TIGR02712 urea_carbox urea car 99.0 5.1E-10 1.1E-14 130.5 9.5 61 73-133 1141-1201(1201)
44 TIGR01108 oadA oxaloacetate de 99.0 6.9E-10 1.5E-14 120.6 9.2 57 73-129 526-582 (582)
45 TIGR01235 pyruv_carbox pyruvat 99.0 1.2E-09 2.6E-14 126.5 10.3 61 73-133 1083-1143(1143)
46 PRK14040 oxaloacetate decarbox 99.0 1.7E-09 3.7E-14 117.7 10.5 60 73-132 533-592 (593)
47 COG4770 Acetyl/propionyl-CoA c 98.9 3.2E-09 7E-14 111.7 7.7 61 73-133 584-644 (645)
48 PRK09282 pyruvate carboxylase 98.9 6E-09 1.3E-13 113.6 9.1 62 72-133 530-591 (592)
49 PRK12999 pyruvate carboxylase; 98.8 1.4E-08 3E-13 118.2 10.2 61 73-133 1085-1145(1146)
50 COG1038 PycA Pyruvate carboxyl 98.8 7.4E-09 1.6E-13 112.2 6.4 79 47-133 1070-1148(1149)
51 KOG0369 Pyruvate carboxylase [ 98.6 6.1E-08 1.3E-12 103.4 6.5 81 45-133 1095-1175(1176)
52 PF00302 CAT: Chloramphenicol 98.5 1.4E-05 3.1E-10 76.3 18.9 164 274-450 19-188 (206)
53 cd06848 GCS_H Glycine cleavage 98.2 2.3E-06 5E-11 71.8 6.3 65 57-122 14-79 (96)
54 KOG0238 3-Methylcrotonyl-CoA c 98.2 1.4E-06 2.9E-11 91.1 4.5 61 73-133 610-670 (670)
55 PRK13757 chloramphenicol acety 98.1 0.00039 8.4E-09 67.1 19.5 169 267-450 18-191 (219)
56 TIGR03077 not_gcvH glycine cle 97.9 2.2E-05 4.7E-10 67.7 6.4 47 73-119 30-77 (110)
57 KOG0368 Acetyl-CoA carboxylase 97.9 1.4E-05 3.1E-10 91.6 6.6 65 71-136 692-756 (2196)
58 PRK09783 copper/silver efflux 97.9 5.5E-05 1.2E-09 79.5 9.3 64 73-136 132-244 (409)
59 PRK00624 glycine cleavage syst 97.8 4.7E-05 1E-09 66.0 6.5 44 73-116 32-76 (114)
60 TIGR00998 8a0101 efflux pump m 97.8 7.3E-05 1.6E-09 75.8 8.9 35 102-136 205-239 (334)
61 PRK13380 glycine cleavage syst 97.8 5.1E-05 1.1E-09 68.5 6.2 62 58-120 30-92 (144)
62 PRK10559 p-hydroxybenzoic acid 97.7 6.5E-05 1.4E-09 76.1 7.4 63 73-135 56-188 (310)
63 TIGR01730 RND_mfp RND family e 97.7 7.8E-05 1.7E-09 74.6 8.0 65 72-136 34-169 (322)
64 PRK10476 multidrug resistance 97.7 9.7E-05 2.1E-09 75.7 7.7 36 101-136 208-243 (346)
65 PRK01202 glycine cleavage syst 97.6 0.00017 3.6E-09 63.8 7.5 64 73-136 37-108 (127)
66 PRK15136 multidrug efflux syst 97.5 0.00021 4.6E-09 74.6 7.6 35 102-136 216-250 (390)
67 PRK14843 dihydrolipoamide acet 97.5 6.4E-05 1.4E-09 77.2 3.0 43 184-226 4-46 (347)
68 PRK03598 putative efflux pump 97.5 0.00021 4.6E-09 72.6 6.7 35 101-135 203-237 (331)
69 PRK09578 periplasmic multidrug 97.5 0.00037 8E-09 72.5 8.6 64 72-135 71-207 (385)
70 PRK15030 multidrug efflux syst 97.5 0.00041 8.9E-09 72.5 8.8 63 73-135 74-209 (397)
71 PRK09859 multidrug efflux syst 97.4 0.00065 1.4E-08 70.7 9.0 63 73-135 70-205 (385)
72 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00076 1.6E-08 49.7 6.1 38 101-138 2-39 (50)
73 TIGR00527 gcvH glycine cleavag 97.3 0.00041 8.9E-09 61.3 5.3 47 73-119 36-83 (127)
74 PRK12784 hypothetical protein; 97.2 0.0017 3.7E-08 51.7 7.5 65 71-135 12-77 (84)
75 PRK11556 multidrug efflux syst 97.2 0.0011 2.4E-08 69.9 8.4 63 72-134 95-230 (415)
76 PRK11578 macrolide transporter 97.1 0.0016 3.4E-08 67.4 8.9 63 73-135 70-220 (370)
77 PF13533 Biotin_lipoyl_2: Biot 97.1 0.00046 1E-08 50.9 3.5 28 72-99 10-37 (50)
78 PF12700 HlyD_2: HlyD family s 97.0 0.00099 2.1E-08 66.8 5.4 64 72-136 29-194 (328)
79 TIGR02971 heterocyst_DevB ABC 96.9 0.0021 4.6E-08 65.1 7.2 33 103-136 206-238 (327)
80 PF01597 GCV_H: Glycine cleava 96.9 0.0025 5.4E-08 56.0 6.4 44 73-116 31-75 (122)
81 COG4845 Chloramphenicol O-acet 96.8 0.008 1.7E-07 56.7 9.7 105 276-385 24-129 (219)
82 TIGR03309 matur_yqeB selenium- 96.7 0.0051 1.1E-07 60.3 7.9 68 57-136 163-230 (256)
83 COG0509 GcvH Glycine cleavage 96.3 0.0048 1E-07 54.5 4.3 44 73-116 39-83 (131)
84 PRK05889 putative acetyl-CoA c 96.2 0.0075 1.6E-07 47.5 4.6 34 103-136 4-37 (71)
85 TIGR01843 type_I_hlyD type I s 96.2 0.02 4.4E-07 59.5 9.0 34 102-135 272-306 (423)
86 TIGR00999 8a0102 Membrane Fusi 96.1 0.012 2.7E-07 57.3 6.7 35 102-136 89-123 (265)
87 COG1566 EmrA Multidrug resista 96.1 0.014 3E-07 60.2 7.1 36 101-136 208-243 (352)
88 PF13375 RnfC_N: RnfC Barrel s 96.0 0.01 2.2E-07 50.4 4.8 55 58-116 27-81 (101)
89 cd06253 M14_ASTE_ASPA_like_3 A 95.8 0.028 6.1E-07 56.7 7.9 58 73-132 237-297 (298)
90 PRK06748 hypothetical protein; 95.7 0.017 3.8E-07 47.2 4.6 32 103-134 6-37 (83)
91 cd06251 M14_ASTE_ASPA_like_1 A 95.5 0.051 1.1E-06 54.5 8.4 57 74-132 228-286 (287)
92 cd06250 M14_PaAOTO_like An unc 95.5 0.041 8.9E-07 57.0 7.8 59 72-132 296-358 (359)
93 cd06252 M14_ASTE_ASPA_like_2 A 95.5 0.054 1.2E-06 55.1 8.5 59 73-133 252-314 (316)
94 TIGR02994 ectoine_eutE ectoine 95.3 0.057 1.2E-06 55.2 7.9 58 73-132 263-324 (325)
95 cd06850 biotinyl_domain The bi 95.1 0.033 7.2E-07 42.2 4.3 31 104-134 2-32 (67)
96 PRK08225 acetyl-CoA carboxylas 94.9 0.051 1.1E-06 42.5 4.9 34 103-136 3-36 (70)
97 COG0511 AccB Biotin carboxyl c 94.9 0.037 8E-07 49.7 4.5 34 101-134 70-103 (140)
98 cd06254 M14_ASTE_ASPA_like_4 A 94.5 0.094 2E-06 52.6 6.8 55 73-129 231-287 (288)
99 PF13437 HlyD_3: HlyD family s 94.4 0.055 1.2E-06 45.3 4.2 33 103-135 1-33 (105)
100 COG3608 Predicted deacylase [G 94.2 0.11 2.4E-06 53.0 6.7 61 72-134 263-326 (331)
101 PF09891 DUF2118: Uncharacteri 94.0 0.075 1.6E-06 48.2 4.5 46 71-116 87-133 (150)
102 PF07247 AATase: Alcohol acety 94.0 1.1 2.5E-05 47.6 14.2 39 284-322 251-289 (480)
103 PRK07051 hypothetical protein; 93.9 0.17 3.8E-06 40.8 6.1 26 71-96 54-79 (80)
104 PRK06549 acetyl-CoA carboxylas 93.7 0.11 2.5E-06 46.1 4.9 35 101-135 61-95 (130)
105 PF05896 NQRA: Na(+)-transloca 93.6 0.11 2.3E-06 51.3 5.1 44 73-117 38-81 (257)
106 PF00529 HlyD: HlyD family sec 93.4 0.073 1.6E-06 52.7 3.7 37 102-138 2-38 (305)
107 TIGR00998 8a0101 efflux pump m 93.2 0.17 3.7E-06 51.2 6.1 37 101-137 42-78 (334)
108 PRK10476 multidrug resistance 93.1 0.22 4.8E-06 51.0 6.7 42 93-136 42-83 (346)
109 PF00364 Biotin_lipoyl: Biotin 93.0 0.12 2.6E-06 41.1 3.7 34 103-136 2-41 (74)
110 PRK11556 multidrug efflux syst 92.4 0.37 8E-06 50.9 7.5 58 79-137 66-123 (415)
111 PF00529 HlyD: HlyD family sec 92.4 0.13 2.8E-06 51.0 3.9 29 72-100 9-37 (305)
112 PRK05641 putative acetyl-CoA c 92.4 0.2 4.3E-06 45.7 4.8 35 101-135 84-118 (153)
113 PRK09859 multidrug efflux syst 92.3 0.44 9.5E-06 49.6 7.8 57 79-136 40-96 (385)
114 TIGR02971 heterocyst_DevB ABC 92.1 0.23 4.9E-06 50.3 5.2 43 94-136 6-51 (327)
115 TIGR01936 nqrA NADH:ubiquinone 91.8 0.17 3.7E-06 53.9 4.1 54 59-116 27-80 (447)
116 TIGR01235 pyruv_carbox pyruvat 91.4 0.56 1.2E-05 55.6 8.1 62 73-135 1047-1108(1143)
117 TIGR01730 RND_mfp RND family e 91.2 0.39 8.5E-06 47.9 5.8 36 101-136 26-61 (322)
118 PRK05035 electron transport co 91.2 0.35 7.5E-06 54.4 5.8 54 59-116 35-88 (695)
119 PRK11578 macrolide transporter 91.1 0.46 9.9E-06 49.1 6.3 60 75-135 36-95 (370)
120 TIGR01000 bacteriocin_acc bact 91.0 0.47 1E-05 50.7 6.4 40 98-137 56-95 (457)
121 PF12700 HlyD_2: HlyD family s 90.8 0.26 5.7E-06 49.3 4.1 42 92-136 14-55 (328)
122 PRK10559 p-hydroxybenzoic acid 90.8 0.46 1E-05 48.1 5.9 36 102-137 48-83 (310)
123 PRK15136 multidrug efflux syst 90.7 0.46 1E-05 49.7 6.0 37 101-137 61-97 (390)
124 PRK09578 periplasmic multidrug 90.4 0.92 2E-05 47.2 7.9 55 81-136 44-98 (385)
125 PRK05352 Na(+)-translocating N 90.0 0.47 1E-05 50.7 5.3 54 59-116 28-81 (448)
126 TIGR01843 type_I_hlyD type I s 89.7 0.59 1.3E-05 48.6 5.8 44 93-136 35-78 (423)
127 TIGR03794 NHPM_micro_HlyD NHPM 89.7 0.64 1.4E-05 49.0 6.0 38 100-137 57-94 (421)
128 PRK03598 putative efflux pump 89.5 0.6 1.3E-05 47.4 5.6 36 101-136 43-78 (331)
129 PF07831 PYNP_C: Pyrimidine nu 89.5 0.32 7E-06 39.0 2.8 30 70-99 28-57 (75)
130 cd06255 M14_ASTE_ASPA_like_5 A 89.4 0.93 2E-05 45.6 6.8 43 73-115 239-283 (293)
131 TIGR01945 rnfC electron transp 88.7 0.48 1E-05 50.4 4.3 43 73-116 40-82 (435)
132 PRK15030 multidrug efflux syst 88.6 0.83 1.8E-05 47.8 6.0 44 93-137 58-101 (397)
133 COG1726 NqrA Na+-transporting 88.4 0.53 1.2E-05 48.2 4.1 43 76-119 41-83 (447)
134 TIGR00531 BCCP acetyl-CoA carb 88.0 0.49 1.1E-05 43.3 3.3 26 71-96 131-156 (156)
135 PRK06302 acetyl-CoA carboxylas 87.6 0.6 1.3E-05 42.7 3.6 26 71-96 130-155 (155)
136 PF04952 AstE_AspA: Succinylgl 87.4 1.5 3.2E-05 43.6 6.7 59 73-133 228-290 (292)
137 TIGR03794 NHPM_micro_HlyD NHPM 86.9 1 2.2E-05 47.5 5.4 28 72-99 66-93 (421)
138 TIGR01000 bacteriocin_acc bact 86.3 1.1 2.4E-05 47.8 5.4 27 73-99 68-94 (457)
139 PLN02983 biotin carboxyl carri 86.2 1.2 2.7E-05 44.0 5.2 26 71-96 248-273 (274)
140 PRK09783 copper/silver efflux 86.1 1.7 3.6E-05 45.8 6.5 46 91-136 112-159 (409)
141 COG4072 Uncharacterized protei 85.4 1.8 3.9E-05 38.5 5.2 45 71-115 98-143 (161)
142 PF02749 QRPTase_N: Quinolinat 85.2 0.79 1.7E-05 37.6 2.8 23 75-97 46-68 (88)
143 PRK09439 PTS system glucose-sp 84.2 2.2 4.7E-05 39.7 5.5 66 59-134 21-125 (169)
144 PLN02226 2-oxoglutarate dehydr 84.1 1.7 3.6E-05 46.6 5.4 28 71-98 141-168 (463)
145 COG4656 RnfC Predicted NADH:ub 84.0 0.93 2E-05 48.7 3.4 53 59-116 31-83 (529)
146 PRK14042 pyruvate carboxylase 84.0 1.3 2.9E-05 48.9 4.7 35 102-136 526-560 (596)
147 KOG3373 Glycine cleavage syste 83.7 0.81 1.8E-05 41.8 2.4 55 60-119 73-127 (172)
148 cd00210 PTS_IIA_glc PTS_IIA, P 83.7 2.7 5.8E-05 37.0 5.7 19 116-134 85-103 (124)
149 COG0845 AcrA Membrane-fusion p 83.4 4.3 9.2E-05 40.3 7.8 47 88-135 54-100 (372)
150 PF13437 HlyD_3: HlyD family s 83.1 2.3 5E-05 35.4 4.9 28 71-98 6-33 (105)
151 PF00358 PTS_EIIA_1: phosphoen 82.9 2.3 5E-05 37.9 5.0 58 73-134 11-107 (132)
152 PRK14875 acetoin dehydrogenase 82.7 2.4 5.3E-05 42.8 5.8 36 58-99 45-80 (371)
153 TIGR00830 PTBA PTS system, glu 82.2 3.2 6.9E-05 36.4 5.5 20 115-134 84-103 (121)
154 PRK14040 oxaloacetate decarbox 81.2 3 6.4E-05 46.2 6.1 35 101-135 524-558 (593)
155 TIGR01108 oadA oxaloacetate de 81.1 2 4.3E-05 47.5 4.7 35 102-136 518-552 (582)
156 TIGR00164 PS_decarb_rel phosph 81.1 3 6.4E-05 39.3 5.3 53 73-130 130-182 (189)
157 cd06663 Biotinyl_lipoyl_domain 80.9 3.8 8.2E-05 31.8 5.1 33 57-95 41-73 (73)
158 PRK05305 phosphatidylserine de 80.0 3.4 7.3E-05 39.5 5.3 54 73-131 150-204 (206)
159 cd00210 PTS_IIA_glc PTS_IIA, P 79.3 1.6 3.6E-05 38.4 2.7 27 72-98 78-104 (124)
160 COG0845 AcrA Membrane-fusion p 79.3 1.7 3.7E-05 43.1 3.3 27 71-97 73-99 (372)
161 COG1566 EmrA Multidrug resista 79.1 3.8 8.3E-05 42.4 5.8 39 101-139 53-91 (352)
162 COG2190 NagE Phosphotransferas 78.8 3.7 8.1E-05 37.6 4.9 18 116-133 92-109 (156)
163 TIGR00830 PTBA PTS system, glu 78.4 1.8 3.8E-05 38.1 2.6 28 72-99 78-105 (121)
164 PRK09282 pyruvate carboxylase 77.4 3.1 6.6E-05 46.1 4.8 35 101-135 522-556 (592)
165 COG4770 Acetyl/propionyl-CoA c 77.4 2.7 5.8E-05 45.7 4.1 33 103-135 577-609 (645)
166 PTZ00144 dihydrolipoamide succ 76.9 4.3 9.3E-05 43.0 5.5 28 71-98 94-121 (418)
167 cd06849 lipoyl_domain Lipoyl d 76.7 3 6.5E-05 30.9 3.3 24 72-95 51-74 (74)
168 PRK09294 acyltransferase PapA5 76.2 39 0.00084 35.2 12.5 111 285-406 209-347 (416)
169 COG2190 NagE Phosphotransferas 75.7 5 0.00011 36.7 4.9 61 72-132 85-153 (156)
170 PRK12784 hypothetical protein; 75.0 3.2 6.9E-05 33.5 2.9 40 98-137 1-41 (84)
171 PRK05704 dihydrolipoamide succ 73.5 4 8.6E-05 43.1 4.2 29 71-99 52-80 (407)
172 TIGR01347 sucB 2-oxoglutarate 73.2 4.3 9.3E-05 42.8 4.4 28 71-98 50-77 (403)
173 TIGR01995 PTS-II-ABC-beta PTS 72.9 4.1 8.9E-05 45.3 4.3 60 72-132 542-609 (610)
174 TIGR02712 urea_carbox urea car 72.8 4.2 9.2E-05 48.7 4.7 34 102-135 1133-1166(1201)
175 COG0508 AceF Pyruvate/2-oxoglu 72.8 3.6 7.9E-05 43.4 3.7 30 107-136 14-43 (404)
176 PF02666 PS_Dcarbxylase: Phosp 72.6 5.4 0.00012 37.8 4.5 59 71-131 143-202 (202)
177 PF00358 PTS_EIIA_1: phosphoen 72.5 2.5 5.4E-05 37.7 2.1 40 59-99 68-109 (132)
178 PRK09439 PTS system glucose-sp 72.0 3 6.6E-05 38.7 2.6 28 72-99 100-127 (169)
179 KOG0559 Dihydrolipoamide succi 71.6 4.5 9.8E-05 41.7 3.9 27 72-98 123-149 (457)
180 PLN02528 2-oxoisovalerate dehy 70.8 5.3 0.00012 42.3 4.4 29 71-99 48-76 (416)
181 TIGR02645 ARCH_P_rylase putati 69.4 11 0.00024 40.8 6.4 44 93-136 405-472 (493)
182 PRK03934 phosphatidylserine de 68.7 11 0.00023 37.6 5.8 56 73-132 210-265 (265)
183 PRK09824 PTS system beta-gluco 67.7 6.2 0.00013 44.0 4.3 60 72-132 558-625 (627)
184 PRK12999 pyruvate carboxylase; 66.7 6.8 0.00015 46.8 4.6 35 101-135 1076-1110(1146)
185 TIGR01995 PTS-II-ABC-beta PTS 65.9 13 0.00027 41.5 6.3 59 72-134 470-567 (610)
186 PRK09824 PTS system beta-gluco 65.6 11 0.00024 42.1 5.7 59 72-134 486-583 (627)
187 TIGR01349 PDHac_trf_mito pyruv 63.7 9 0.0002 40.8 4.5 29 71-99 49-78 (435)
188 PRK06078 pyrimidine-nucleoside 62.8 17 0.00037 38.8 6.3 45 95-139 329-404 (434)
189 TIGR03327 AMP_phos AMP phospho 62.3 18 0.0004 39.2 6.4 42 95-136 408-473 (500)
190 PRK04350 thymidine phosphoryla 62.1 19 0.00042 38.9 6.6 42 94-135 398-463 (490)
191 TIGR02643 T_phosphoryl thymidi 61.1 20 0.00043 38.3 6.3 39 97-135 335-404 (437)
192 TIGR03309 matur_yqeB selenium- 60.9 11 0.00025 37.2 4.2 33 101-134 164-196 (256)
193 PRK14844 bifunctional DNA-dire 60.5 15 0.00032 47.1 5.9 20 77-96 2423-2442(2836)
194 COG0157 NadC Nicotinate-nucleo 60.3 8.9 0.00019 38.4 3.4 24 73-96 63-86 (280)
195 cd06255 M14_ASTE_ASPA_like_5 A 59.5 12 0.00026 37.7 4.3 35 101-136 231-265 (293)
196 PRK10255 PTS system N-acetyl g 58.6 15 0.00034 41.1 5.3 66 59-134 499-603 (648)
197 PRK05820 deoA thymidine phosph 58.5 23 0.0005 37.9 6.3 40 97-136 336-406 (440)
198 PRK03140 phosphatidylserine de 56.9 12 0.00025 37.1 3.6 57 73-132 202-258 (259)
199 cd06251 M14_ASTE_ASPA_like_1 A 56.2 15 0.00032 36.8 4.3 35 101-136 219-253 (287)
200 cd06253 M14_ASTE_ASPA_like_3 A 55.9 14 0.00029 37.4 4.0 34 101-135 229-262 (298)
201 TIGR02644 Y_phosphoryl pyrimid 55.9 21 0.00045 37.8 5.4 42 95-136 327-399 (405)
202 PRK11892 pyruvate dehydrogenas 55.6 14 0.00031 39.7 4.3 29 70-98 51-80 (464)
203 PRK08072 nicotinate-nucleotide 55.4 12 0.00026 37.4 3.5 22 75-96 65-86 (277)
204 PRK10255 PTS system N-acetyl g 55.3 14 0.0003 41.4 4.2 29 72-100 578-606 (648)
205 cd06254 M14_ASTE_ASPA_like_4 A 55.0 16 0.00035 36.6 4.3 35 100-135 222-256 (288)
206 cd06250 M14_PaAOTO_like An unc 54.9 16 0.00034 38.0 4.3 34 102-136 290-323 (359)
207 KOG0368 Acetyl-CoA carboxylase 54.6 36 0.00078 41.4 7.4 80 54-133 631-717 (2196)
208 PF01551 Peptidase_M23: Peptid 54.3 20 0.00043 29.3 4.1 57 70-135 19-75 (96)
209 TIGR02946 acyl_WS_DGAT acyltra 54.2 1.2E+02 0.0025 31.8 10.9 89 285-384 232-331 (446)
210 KOG0369 Pyruvate carboxylase [ 53.2 11 0.00023 42.1 2.8 32 103-134 1108-1139(1176)
211 PRK11856 branched-chain alpha- 53.2 16 0.00035 38.4 4.2 29 71-99 52-80 (411)
212 COG1038 PycA Pyruvate carboxyl 53.0 19 0.00042 41.0 4.8 32 104-135 1082-1113(1149)
213 cd01572 QPRTase Quinolinate ph 52.4 16 0.00034 36.5 3.7 24 73-96 57-80 (268)
214 cd06910 M14_ASTE_ASPA_like_7 A 52.3 23 0.00051 35.1 5.0 46 80-132 226-272 (272)
215 TIGR02994 ectoine_eutE ectoine 51.8 19 0.00041 36.9 4.3 34 101-135 255-288 (325)
216 PRK06543 nicotinate-nucleotide 51.6 15 0.00033 36.9 3.5 23 74-96 65-87 (281)
217 PF07831 PYNP_C: Pyrimidine nu 50.9 21 0.00046 28.5 3.6 30 107-138 30-59 (75)
218 PRK06096 molybdenum transport 50.9 16 0.00034 36.8 3.5 23 74-96 61-83 (284)
219 PRK02597 rpoC2 DNA-directed RN 50.7 37 0.00081 41.0 6.9 38 77-114 404-448 (1331)
220 cd06252 M14_ASTE_ASPA_like_2 A 50.2 29 0.00063 35.2 5.4 36 99-135 242-277 (316)
221 cd01134 V_A-ATPase_A V/A-type 50.0 31 0.00067 36.0 5.5 56 79-136 54-112 (369)
222 PRK05820 deoA thymidine phosph 49.9 13 0.00029 39.6 2.9 30 68-97 375-404 (440)
223 PLN02744 dihydrolipoyllysine-r 49.3 17 0.00038 39.8 3.8 28 71-98 162-190 (539)
224 PRK05742 nicotinate-nucleotide 49.2 18 0.00038 36.3 3.5 22 75-96 67-88 (277)
225 PRK09016 quinolinate phosphori 49.1 18 0.00038 36.7 3.5 23 74-96 85-107 (296)
226 TIGR02645 ARCH_P_rylase putati 48.9 16 0.00034 39.6 3.2 32 66-97 439-470 (493)
227 KOG0238 3-Methylcrotonyl-CoA c 48.8 15 0.00033 39.7 3.1 32 104-135 604-635 (670)
228 cd01573 modD_like ModD; Quinol 48.7 18 0.00039 36.1 3.5 23 74-96 56-78 (272)
229 KOG0557 Dihydrolipoamide acety 48.7 15 0.00033 39.1 3.1 31 107-137 50-80 (470)
230 PRK07428 nicotinate-nucleotide 48.6 18 0.00039 36.5 3.5 23 74-96 72-94 (288)
231 PRK06978 nicotinate-nucleotide 47.8 19 0.00041 36.4 3.5 23 74-96 82-104 (294)
232 PRK04350 thymidine phosphoryla 47.5 17 0.00037 39.3 3.3 32 66-97 431-462 (490)
233 cd01568 QPRTase_NadC Quinolina 47.2 20 0.00042 35.7 3.5 24 73-96 56-79 (269)
234 PLN02716 nicotinate-nucleotide 47.1 20 0.00042 36.6 3.5 24 73-96 77-100 (308)
235 PRK05848 nicotinate-nucleotide 47.1 20 0.00043 35.9 3.5 22 75-96 59-80 (273)
236 TIGR02643 T_phosphoryl thymidi 46.8 17 0.00036 38.9 3.0 29 68-96 374-402 (437)
237 PRK07896 nicotinate-nucleotide 46.3 21 0.00045 36.1 3.5 23 74-96 76-98 (289)
238 TIGR03327 AMP_phos AMP phospho 46.3 18 0.00039 39.2 3.2 32 66-97 440-471 (500)
239 PRK06106 nicotinate-nucleotide 46.2 21 0.00045 35.9 3.5 24 73-96 69-92 (281)
240 PF01551 Peptidase_M23: Peptid 45.7 18 0.0004 29.5 2.6 26 73-98 50-75 (96)
241 PRK06078 pyrimidine-nucleoside 45.7 17 0.00037 38.8 2.9 30 70-99 372-401 (434)
242 COG3608 Predicted deacylase [G 45.4 38 0.00082 34.9 5.2 43 91-136 248-290 (331)
243 PF06898 YqfD: Putative stage 45.3 28 0.00062 36.4 4.5 54 72-132 167-227 (385)
244 TIGR00163 PS_decarb phosphatid 45.1 19 0.00042 35.1 3.0 48 83-131 189-236 (238)
245 TIGR02644 Y_phosphoryl pyrimid 44.1 18 0.00039 38.3 2.8 29 70-98 370-398 (405)
246 PRK08385 nicotinate-nucleotide 43.9 24 0.00052 35.4 3.5 23 74-96 58-80 (278)
247 PRK04192 V-type ATP synthase s 43.8 48 0.001 36.7 6.1 55 79-135 123-180 (586)
248 TIGR01334 modD putative molybd 43.1 25 0.00054 35.3 3.5 23 74-96 60-82 (277)
249 TIGR00078 nadC nicotinate-nucl 43.1 25 0.00054 34.9 3.5 21 76-96 56-76 (265)
250 COG0213 DeoA Thymidine phospho 41.2 60 0.0013 34.4 6.0 51 94-144 329-411 (435)
251 PRK00044 psd phosphatidylserin 40.4 27 0.00059 35.1 3.4 58 74-133 224-286 (288)
252 PF13375 RnfC_N: RnfC Barrel s 38.9 44 0.00094 28.3 3.8 50 83-133 12-62 (101)
253 COG4072 Uncharacterized protei 38.3 65 0.0014 28.9 4.9 30 105-134 95-124 (161)
254 COG4908 Uncharacterized protei 38.1 4E+02 0.0086 28.4 11.3 108 285-405 218-368 (439)
255 TIGR01042 V-ATPase_V1_A V-type 38.1 69 0.0015 35.5 6.1 56 79-136 123-181 (591)
256 COG1155 NtpA Archaeal/vacuolar 38.0 75 0.0016 34.8 6.2 56 80-136 122-179 (588)
257 PRK10871 nlpD lipoprotein NlpD 37.8 29 0.00063 35.5 3.1 57 71-135 236-292 (319)
258 PF06898 YqfD: Putative stage 37.7 36 0.00079 35.6 3.9 24 71-94 196-226 (385)
259 TIGR00999 8a0102 Membrane Fusi 36.7 49 0.0011 31.9 4.5 31 60-96 90-120 (265)
260 CHL00117 rpoC2 RNA polymerase 33.6 52 0.0011 40.1 4.7 40 77-116 405-452 (1364)
261 PF03869 Arc: Arc-like DNA bin 33.6 1.4E+02 0.003 21.8 5.3 48 278-327 2-49 (50)
262 PF05896 NQRA: Na(+)-transloca 32.8 28 0.0006 34.6 1.9 31 102-132 30-60 (257)
263 TIGR02876 spore_yqfD sporulati 32.1 79 0.0017 33.2 5.3 55 72-132 163-224 (382)
264 PRK14698 V-type ATP synthase s 31.7 81 0.0018 37.4 5.8 67 60-134 106-179 (1017)
265 PRK06559 nicotinate-nucleotide 31.3 48 0.001 33.5 3.4 24 73-96 70-95 (290)
266 PF02749 QRPTase_N: Quinolinat 31.3 1.3E+02 0.0027 24.5 5.4 41 99-139 17-73 (88)
267 KOG1668 Elongation factor 1 be 30.5 28 0.00062 33.8 1.6 27 77-103 181-207 (231)
268 KOG0095 GTPase Rab30, small G 30.1 67 0.0015 29.5 3.7 39 395-433 7-52 (213)
269 PRK08662 nicotinate phosphorib 30.1 49 0.0011 34.2 3.3 23 73-97 70-92 (343)
270 TIGR02876 spore_yqfD sporulati 29.9 65 0.0014 33.8 4.2 25 72-96 194-225 (382)
271 COG0213 DeoA Thymidine phospho 29.6 45 0.00098 35.3 2.9 28 70-97 373-400 (435)
272 TIGR01043 ATP_syn_A_arch ATP s 29.6 1.1E+02 0.0023 34.1 5.9 56 79-136 120-178 (578)
273 TIGR02388 rpoC2_cyan DNA-direc 25.9 1.4E+02 0.003 36.2 6.2 38 77-114 404-448 (1227)
274 PRK07188 nicotinate phosphorib 25.3 75 0.0016 33.0 3.7 22 75-96 72-93 (352)
275 PF09891 DUF2118: Uncharacteri 24.8 52 0.0011 30.0 2.1 41 85-136 75-115 (150)
276 PRK02259 aspartoacylase; Provi 23.9 36 0.00078 34.1 1.0 53 75-130 227-281 (288)
277 cd00516 PRTase_typeII Phosphor 23.4 82 0.0018 31.1 3.5 24 73-96 49-72 (281)
278 TIGR00164 PS_decarb_rel phosph 23.0 2.5E+02 0.0054 26.3 6.4 63 72-135 80-154 (189)
279 PTZ00403 phosphatidylserine de 22.5 83 0.0018 32.7 3.3 59 73-134 281-340 (353)
280 smart00226 LMWPc Low molecular 22.3 67 0.0015 28.0 2.3 32 187-223 41-72 (140)
281 TIGR01796 CM_mono_aroH monofun 22.3 86 0.0019 27.4 2.9 38 363-400 11-49 (117)
282 PRK11637 AmiB activator; Provi 20.8 1.1E+02 0.0024 32.3 4.0 34 103-136 341-402 (428)
283 cd01571 NAPRTase_B Nicotinate 20.5 1E+02 0.0022 31.3 3.4 17 80-96 58-74 (302)
284 COG4325 Predicted membrane pro 20.4 1.2E+02 0.0025 32.1 3.8 37 101-137 229-283 (464)
285 cd02185 AroH Chorismate mutase 20.4 99 0.0022 27.0 2.9 38 363-400 11-49 (117)
286 PRK09603 bifunctional DNA-dire 20.3 1.4E+02 0.0029 39.2 5.0 52 78-129 2616-2720(2890)
No 1
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=3e-84 Score=670.57 Aligned_cols=367 Identities=31% Similarity=0.446 Sum_probs=304.5
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|++|++|++|++.++
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 2 MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAA 81 (407)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccch
Q 012955 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~ 217 (452)
+... ... +...++ +. + .+.+... .+. . ....+++||+||+||+||||||++|.|||++|||++
T Consensus 82 ~~~~----~~~-----~~~~~~-~~-~-~~~~~~~---~~~-~-~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~ 144 (407)
T PRK05704 82 AGAA----AAA-----AAAAAA-AA-A-APAQAQA---AAA-A-EQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTK 144 (407)
T ss_pred cccc----CCC-----CCCCCC-CC-C-CCCCCCC---Ccc-C-CCccccCCchhhhHHhhcCCChhhCCCCCCCCcccH
Confidence 2110 000 000000 00 0 0000000 000 0 112467999999999999999999999999999999
Q ss_pred hhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHH
Q 012955 218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296 (452)
Q Consensus 218 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~ 296 (452)
+||++|+....... . +.+.+.... .+........+.+||+++||+|+++|++| +++||||++.+||+++|++
T Consensus 145 ~DV~~~~~~~~~~~----~-~~~~~~~~~--~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~ 217 (407)
T PRK05704 145 EDVLAALAAAAAAP----A-APAAAAPAA--APAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMD 217 (407)
T ss_pred HHHHHHhhcccccC----C-CCCCCCCcC--CCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHH
Confidence 99999975321110 0 000000000 00000011134689999999999999999 8999999999999999999
Q ss_pred HHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHH
Q 012955 297 LYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYL 369 (452)
Q Consensus 297 lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~e 369 (452)
+|+++++ -++|+++||+||++.||++||.||++|+ ++++++++++||||||++++||++|||||+|+|||.|
T Consensus 218 ~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~e 296 (407)
T PRK05704 218 LRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASID-GDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296 (407)
T ss_pred HHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEc-CCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHH
Confidence 9999974 1699999999999999999999999996 4579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEE
Q 012955 370 LSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLI 449 (452)
Q Consensus 370 ia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt 449 (452)
|++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++||++ ||++++|++|+||||
T Consensus 297 Ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls 375 (407)
T PRK05704 297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALS 375 (407)
T ss_pred HHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred e
Q 012955 450 S 450 (452)
Q Consensus 450 ~ 450 (452)
|
T Consensus 376 ~ 376 (407)
T PRK05704 376 Y 376 (407)
T ss_pred e
Confidence 8
No 2
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.2e-83 Score=662.86 Aligned_cols=364 Identities=29% Similarity=0.454 Sum_probs=303.5
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~ 138 (452)
++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.+||+||++|+|.++++++|+.|++|++|++|++.++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999754321
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccchh
Q 012955 139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE 218 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~ 218 (452)
.. . . . ++. .++.....+.+ . .+ .+ ...++++.+||+||+||+||||||+.|.|||++|||+++
T Consensus 81 -~~--~--~--~--~~~-~~~~~~~~~~~--~-~~--~~--~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~ 143 (403)
T TIGR01347 81 -TA--A--P--P--AKS-GEEKEETPAAS--A-AA--AP--TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKE 143 (403)
T ss_pred -cc--c--c--c--ccc-cCCCCCCCCCC--C-CC--CC--cCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHH
Confidence 00 0 0 0 000 00000000000 0 00 00 011246689999999999999999999999999999999
Q ss_pred hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHH
Q 012955 219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297 (452)
Q Consensus 219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~l 297 (452)
||++|++..... + . +.+ ....+. +.. .....+.+||+++||+|+++|++| +++||||++.++|+++|+++
T Consensus 144 DV~~~~~~~~~~---~-~-~~~--~~~~~~-~~~-~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~ 214 (403)
T TIGR01347 144 DIIKKTEAPASA---Q-A-PAP--AAAAKA-PAN-FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL 214 (403)
T ss_pred HHHHhhhccccc---C-C-CCC--CcccCC-ccc-cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence 999997531110 0 0 000 000000 000 011235689999999999999999 79999999999999999999
Q ss_pred HHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHH
Q 012955 298 YEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370 (452)
Q Consensus 298 r~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ei 370 (452)
|+++++. ++|+++||+||++.||++||.||++|+ +++|++++++||||||++++||++|||||+|+|||.||
T Consensus 215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eI 293 (403)
T TIGR01347 215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEID-GDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADI 293 (403)
T ss_pred HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEc-CCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHH
Confidence 9998741 699999999999999999999999996 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 371 a~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus 294 a~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~ 372 (403)
T TIGR01347 294 EKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSY 372 (403)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999996 7999999999999998
No 3
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=2.9e-83 Score=690.82 Aligned_cols=394 Identities=30% Similarity=0.421 Sum_probs=306.7
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+..+|.||+||++|++|+|++|+|++||.|++||.||+|||||+.++|+||++|+|.+|++++|+.|++|++|++|++.+
T Consensus 134 ~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 134 AATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred hhHHHHHhhhhccCCC--CCCCCCCCCCC----CCCC-CCC----CCC--CCCCC-CCCCCCccccChhHHHHHhhcCCC
Q 012955 137 AEVAQAKAKAASAGAA--APASHPVTSTP----VPAV-SPP----EPK--KVAES-APSGPRKTVATPYAKKLLKQHKVD 202 (452)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~p~~~~----~~~~-~~~----~~~--~~~~~-~~~~~~~~~asP~aRklA~e~gId 202 (452)
++.............. .+....+.... ...+ .+. ... ...+. ....+.++++||+|||||+|||||
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvd 293 (590)
T TIGR02927 214 AAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGID 293 (590)
T ss_pred CccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCC
Confidence 3321100000000000 00000000000 0000 000 000 00000 011234678999999999999999
Q ss_pred ccccccCCCCcccchhhHHHhhccCCCCCCCCCCC-CCCCCCCC-CCCCCCCCC--CCCCceeccchhhHHHHHHhhhc-
Q 012955 203 INSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA-PAALPKPA-PAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES- 277 (452)
Q Consensus 203 L~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~~~~p~s~~rk~ia~~m~~S- 277 (452)
|+.|.|||++|||+++||++|+.........+... ....+... .......+. ...++.+||++|||.|+++|++|
T Consensus 294 l~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~ 373 (590)
T TIGR02927 294 LNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL 373 (590)
T ss_pred HHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence 99999999999999999999985321100000000 00000000 000000000 00245689999999999999999
Q ss_pred CCccEEEEEEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEe
Q 012955 278 LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVA 349 (452)
Q Consensus 278 ~~iP~~~~~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~ 349 (452)
+++||||++.+||+++|+++|+++++. ++|+++||+||++.||++||.||++|++ ++.|++|+++||||||+
T Consensus 374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~ 453 (590)
T TIGR02927 374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD 453 (590)
T ss_pred ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence 789999999999999999999999741 6999999999999999999999999974 45899999999999999
Q ss_pred cCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeE
Q 012955 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT 429 (452)
Q Consensus 350 ~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~ 429 (452)
+++||++|||||+|+|||.+|++++++|.+|+|+|+|+++||+|||||||||||||+++|+|||||||+||||||+++++
T Consensus 454 t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~ 533 (590)
T TIGR02927 454 TDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKR 533 (590)
T ss_pred CCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc--CCC--cEEEEeEEEEEEEe
Q 012955 430 VVAD--ADG--FFGVKSKMLVSLIS 450 (452)
Q Consensus 430 ~v~~--~dg--~i~~~~~m~ltlt~ 450 (452)
||++ +|| .|++|++|+|||||
T Consensus 534 pv~~~~~~g~~~~~~~~~m~lsls~ 558 (590)
T TIGR02927 534 PRVITDEDGIDSIAIRQMCHLPLTY 558 (590)
T ss_pred EEEeccCCCcccEEEEeeEEEeeec
Confidence 9985 245 49999999999998
No 4
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=6.7e-83 Score=674.22 Aligned_cols=382 Identities=34% Similarity=0.510 Sum_probs=306.9
Q ss_pred ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEec
Q 012955 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAE 134 (452)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~ 134 (452)
..+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+++++|+|.+|++++|+ .|++|++|+++.+
T Consensus 110 ~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 110 PPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred CCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 446999999999999999999999999999999999999999999999999999999999999996 7999999999865
Q ss_pred chhhHHHHHhhhhcc--CCCCCCC-CCCC-CCCC--CCCCCCCCC-CCCC-CCCCCCCccccChhHHHHHhhcCCCcccc
Q 012955 135 TEAEVAQAKAKAASA--GAAAPAS-HPVT-STPV--PAVSPPEPK-KVAE-SAPSGPRKTVATPYAKKLLKQHKVDINSV 206 (452)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~-~~p~-~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~asP~aRklA~e~gIdL~~V 206 (452)
++++.+......+.. ..+.+.. ..++ +... ..+.+.+.+ ...+ .....+.++++||+|||||+||||||+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V 269 (539)
T PLN02744 190 EEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSI 269 (539)
T ss_pred CccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCCHHHC
Confidence 443321111000000 0000000 0000 0000 000000000 0000 00112246789999999999999999999
Q ss_pred ccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955 207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV 285 (452)
Q Consensus 207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~ 285 (452)
+|||++|||+++||++|+....... +.+. ..+ . ..+....+.+|+++|||.|+++|.+| +++||||+
T Consensus 270 ~GTGp~GRI~k~DV~a~~~~~~~~~------~~~~--~~~--~--~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~ 337 (539)
T PLN02744 270 KGTGPDGRIVKADIEDYLASGGKGA------TAPP--STD--S--KAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYL 337 (539)
T ss_pred CCCCCCCcccHHHHHHHhhcccccc------CCCC--Ccc--c--CCCCCccccccchhHHHHHHHHHHHHHhhCCeEEE
Confidence 9999999999999999975311100 0010 000 0 00011235689999999999999999 89999999
Q ss_pred EEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeee
Q 012955 286 GYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV 358 (452)
Q Consensus 286 ~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPV 358 (452)
+.++|+++|+++|+++++ .++|+++||+||++.||++||.||++|+ ++.|+++++|||||||++++||++||
T Consensus 338 ~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~-~~~i~~~~~vnIgvAV~t~~GL~vPV 416 (539)
T PLN02744 338 TVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWT-DDYIRQYHNVNINVAVQTENGLYVPV 416 (539)
T ss_pred EEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeec-cCcEEEeCCcceEEEEECCCCeEECc
Confidence 999999999999999973 2799999999999999999999999996 46899999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCC-CCCCCCeEeecCCCceEEEEecCceeEEEEc-CCC
Q 012955 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG-MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-ADG 436 (452)
Q Consensus 359 I~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG-~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~-~dg 436 (452)
|||+|+|||.||++++++|++|+|+|+|+++||+||||||||+| |||+.+|+|||||||+||||||+++++||+. .||
T Consensus 417 Ir~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g 496 (539)
T PLN02744 417 VKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPD 496 (539)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCC
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999983 479
Q ss_pred cEEEEeEEEEEEEe
Q 012955 437 FFGVKSKMLVSLIS 450 (452)
Q Consensus 437 ~i~~~~~m~ltlt~ 450 (452)
+|++|++|+|||||
T Consensus 497 ~i~~r~~m~lsLs~ 510 (539)
T PLN02744 497 QYNFASFMSVTLSC 510 (539)
T ss_pred eEEEeeeeEEeEec
Confidence 99999999999998
No 5
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=2.2e-83 Score=649.44 Aligned_cols=392 Identities=42% Similarity=0.608 Sum_probs=327.9
Q ss_pred cceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC-CccCCCCeEEEEe
Q 012955 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILA 133 (452)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G-~~v~~G~~l~~i~ 133 (452)
.+.++.|.||.|+++|++|.|++|.++|||++++||+||||||||++|++|++++|+|.+|+++|| ..|++|.+||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred cchhhHHHHHhhhhccC-CCCCCCCCCCCCCCC---CCCCCC--CC-CCCCCCCCCCCccccChhHHHHHhhcCCCcccc
Q 012955 134 ETEAEVAQAKAKAASAG-AAAPASHPVTSTPVP---AVSPPE--PK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSV 206 (452)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~---~~~~~~--~~-~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V 206 (452)
+.+++++.++.+..+.+ .......+++++++. .+.|.+ .+ .+.+..+..++++.+||++|+||.|+|+||+.|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 99999988876654211 111111111111110 011100 01 011111222569999999999999999999999
Q ss_pred ccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955 207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV 285 (452)
Q Consensus 207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~ 285 (452)
.||||+|||++.||++|++..........+...+. .+ .+......++++++|++.||+.|+++|.+| ++|||||+
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~--~~--~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yv 270 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPP--PA--PAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYV 270 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCC--cC--ccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEE
Confidence 99999999999999999986332110000000010 00 001112233478999999999999999999 99999999
Q ss_pred EEEEechHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecC
Q 012955 286 GYPIITDALDALYEKVK----PKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD 361 (452)
Q Consensus 286 ~~eid~~~l~~lr~~~~----~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ 361 (452)
.+++++++|+++|++++ ..++|+++||+||++.||+++|+.|++|.++..|+++++|||.+||++++||++|+|+|
T Consensus 271 t~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n 350 (470)
T KOG0557|consen 271 TVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN 350 (470)
T ss_pred eeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence 99999999999999999 44899999999999999999999999998767899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEE--cCCCcEE
Q 012955 362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVA--DADGFFG 439 (452)
Q Consensus 362 a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~--~~dg~i~ 439 (452)
++.+++.+|++++++|..|+|.|+|.|+||+|||||||||||||++.|+.||||||.|||+||+.++.+|. +.++.+.
T Consensus 351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~ 430 (470)
T KOG0557|consen 351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS 430 (470)
T ss_pred cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 5567899
Q ss_pred EEeEEEEEEEe
Q 012955 440 VKSKMLVSLIS 450 (452)
Q Consensus 440 ~~~~m~ltlt~ 450 (452)
..++|+|||+|
T Consensus 431 ~~~~m~VTls~ 441 (470)
T KOG0557|consen 431 VINAMTVTLSA 441 (470)
T ss_pred eeeeeEEEEec
Confidence 99999999997
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=4.1e-81 Score=652.58 Aligned_cols=385 Identities=36% Similarity=0.579 Sum_probs=304.0
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc-cCCCCeEEEEecchhh
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES-APVGAAIGILAETEAE 138 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~-v~~G~~l~~i~~~~~~ 138 (452)
+|.||+||++|+||+|++|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+. +++|++|++|++.+++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 378999999999999999999999999999999999999999999999999999999999999 9999999999754432
Q ss_pred HHHHHhhh-hccCCCC--CCCCCCC-CCCCCCC--CCCCCC-CCC-CCC---CCCCCccccChhHHHHHhhcCCCccccc
Q 012955 139 VAQAKAKA-ASAGAAA--PASHPVT-STPVPAV--SPPEPK-KVA-ESA---PSGPRKTVATPYAKKLLKQHKVDINSVV 207 (452)
Q Consensus 139 ~~~~~~~~-~~~~~~~--~~~~~p~-~~~~~~~--~~~~~~-~~~-~~~---~~~~~~~~asP~aRklA~e~gIdL~~V~ 207 (452)
.+...... .+....+ +.+..+. +.....+ .+.... ... +.. ...+.++++||+||+||+||||||+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 21000000 0000000 0000000 0000000 000000 000 000 1112357899999999999999999999
Q ss_pred cCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEE
Q 012955 208 GTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVG 286 (452)
Q Consensus 208 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~ 286 (452)
|||++|||+++||++|+....... +. +...+................+.+||++|||+|+++|++| +++||||++
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~ 236 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSPASA--NF--QAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 236 (435)
T ss_pred CCCCCCceeHHHHHHHHhcccccC--CC--ccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEE
Confidence 999999999999999985421100 00 0000000000000000111235689999999999999999 899999999
Q ss_pred EEEechHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecC
Q 012955 287 YPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD 361 (452)
Q Consensus 287 ~eid~~~l~~lr~~~~~-----~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ 361 (452)
.++|+++|+++|+++++ .++|+++||+||+++||++||.||++|++ ++|+++++|||||||++++||++|||||
T Consensus 237 ~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~-~~i~~~~~vnigvAv~~~~GL~vPvi~~ 315 (435)
T TIGR01349 237 IECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTD-NFIRRYKNVDISVAVATPDGLITPIVRN 315 (435)
T ss_pred EEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeC-CeEEEeCCeeEEEEEECCCCeEECCCCC
Confidence 99999999999999984 37999999999999999999999999975 6899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCc---E
Q 012955 362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGF---F 438 (452)
Q Consensus 362 a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~---i 438 (452)
+|+|||.||++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||||+++++||++ ||+ |
T Consensus 316 a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~i 394 (435)
T TIGR01349 316 ADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKGF 394 (435)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 566 9
Q ss_pred EEEeEEEEEEEe
Q 012955 439 GVKSKMLVSLIS 450 (452)
Q Consensus 439 ~~~~~m~ltlt~ 450 (452)
++|++|+|+|||
T Consensus 395 ~~~~~m~lsls~ 406 (435)
T TIGR01349 395 AVASIMSVTLSC 406 (435)
T ss_pred EEeeeEEEeEee
Confidence 999999999998
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=5.7e-81 Score=668.19 Aligned_cols=385 Identities=26% Similarity=0.376 Sum_probs=305.5
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.++|+||+||+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|++|++|+.|++.++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999976443
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--CCCCCCCcc-ccChhHHHHHhhcCCCccccccCCC
Q 012955 138 EVAQAKAKAASAGAAAPASHPVTSTP---VPAVSPPEPKKVAE--SAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGP 211 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~--~~~~~~~~~-~asP~aRklA~e~gIdL~~V~gtG~ 211 (452)
+...... .... .+....+.++. ...+.+........ .....+.++ ++||+||+||+||||||+.|.|||+
T Consensus 195 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 270 (546)
T TIGR01348 195 TPATAPA--PASA--QPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGI 270 (546)
T ss_pred CcccccC--cccc--cccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCC
Confidence 2110000 0000 00000010000 00000000000000 001112345 7999999999999999999999999
Q ss_pred CcccchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEE
Q 012955 212 FGRITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPAAAPAA--PLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGY 287 (452)
Q Consensus 212 ~GrI~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~ 287 (452)
+|||+++||++|+..... .+..+.+ .+.+.......... ......+.+||++|||.|+++|.+| +++||||++.
T Consensus 271 ~GrI~~~DV~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~ 348 (546)
T TIGR01348 271 KGRILREDVQRFVKEPSVRAQAAAAS--AAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFD 348 (546)
T ss_pred CCeEeHHHHHHHhhccccccCccccc--ccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEE
Confidence 999999999999753211 0000000 00000000000000 0001235689999999999999999 8999999999
Q ss_pred EEechHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeeec
Q 012955 288 PIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQ 360 (452)
Q Consensus 288 eid~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~ 360 (452)
++|+++|+++|+++++. ++|+++||+||++.||++||.||++|++ +++|+++++|||||||++++||++||||
T Consensus 349 evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~ 428 (546)
T TIGR01348 349 KADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIK 428 (546)
T ss_pred EEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcC
Confidence 99999999999999852 7999999999999999999999999974 3679999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEE
Q 012955 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGV 440 (452)
Q Consensus 361 ~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~ 440 (452)
|+|+|||.+|++++++|++|+|+|+|+++||+||||||||+||||+++|+|||||||+||||||+++++|+++ ||++++
T Consensus 429 ~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~ 507 (546)
T TIGR01348 429 DVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEP 507 (546)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred EeEEEEEEEe
Q 012955 441 KSKMLVSLIS 450 (452)
Q Consensus 441 ~~~m~ltlt~ 450 (452)
|++|+|||||
T Consensus 508 ~~~m~ltls~ 517 (546)
T TIGR01348 508 RLMLPLSLSY 517 (546)
T ss_pred EEEEEEeEec
Confidence 9999999998
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=8e-81 Score=647.08 Aligned_cols=374 Identities=25% Similarity=0.359 Sum_probs=302.1
Q ss_pred EEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhhHH
Q 012955 61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVA 140 (452)
Q Consensus 61 i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~~~ 140 (452)
++||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+++|+|.++++++|+.+++|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999975443211
Q ss_pred HHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccchhhH
Q 012955 141 QAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV 220 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV 220 (452)
. .. + . +.+. .+. ....+ .... .... ....+++||+||+||+||||||+.|+|||++|||+++||
T Consensus 81 ~-~~-~---~-~~~~--~~~--~~~~~--~~~~--~~~~--~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV 144 (416)
T PLN02528 81 R-SD-S---L-LLPT--DSS--NIVSL--AESD--ERGS--NLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDV 144 (416)
T ss_pred c-cc-C---C-CCCC--CCc--cCCCC--CCCC--cccc--ccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHH
Confidence 0 00 0 0 0000 000 00000 0000 0000 112357999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CC-CCceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHH
Q 012955 221 EKAAGIAPSKSVAPSAAPAALPKPAPAA-APAAPL-LP-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDAL 297 (452)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~l 297 (452)
++|+............+....+...... ....+. .. ..+.+||+++||+|+++|++|+++||||+..+||+++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~ 224 (416)
T PLN02528 145 LKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVEL 224 (416)
T ss_pred HHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHH
Confidence 9997532110000000000000000000 000000 01 13568999999999999999999999999999999999999
Q ss_pred HHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHH
Q 012955 298 YEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370 (452)
Q Consensus 298 r~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ei 370 (452)
|+++++. ++|+++||+||+++||++||.||++|+++ +.+++++++||||||++++||++|||||+|+||+.||
T Consensus 225 r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI 304 (416)
T PLN02528 225 KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEI 304 (416)
T ss_pred HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHH
Confidence 9999741 79999999999999999999999999743 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 371 a~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||||+++++|++.+||+|++|++|+|||||
T Consensus 305 ~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~ 384 (416)
T PLN02528 305 TKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGA 384 (416)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEec
Confidence 99999999999999999999999999999999999999999999999999999999999998656999999999999998
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2e-78 Score=626.60 Aligned_cols=366 Identities=38% Similarity=0.548 Sum_probs=308.0
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.++|+||+||++|+||+|++|+|++||.|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|++++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccc
Q 012955 137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT 216 (452)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~ 216 (452)
++.. +.+ .....+..+ .+ +..+ .+......++..+||++|+||+|+||||.++.|||++|||+
T Consensus 81 ~~~~-----a~~-----~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~ 143 (404)
T COG0508 81 ADAP-----AAA-----EAPPEPAAA---AP--ASAP--ATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRIT 143 (404)
T ss_pred Cccc-----ccC-----cccCCcccc---Cc--Cccc--CccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCcee
Confidence 5420 000 000000000 00 0000 00000011568999999999999999999999999999999
Q ss_pred hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHH
Q 012955 217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD 295 (452)
Q Consensus 217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~ 295 (452)
++|++.++....... ..+. ... +........++++||+++||.|+++|.+| .++||+|.+.++|++.|.
T Consensus 144 ~~d~~~~~~~~~~~~------~~~~--~~~--~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~ 213 (404)
T COG0508 144 KKDVEAAVAEKAAAA------AAPA--PAA--AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM 213 (404)
T ss_pred ccchhhhcccccccc------cccc--ccc--CCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHH
Confidence 999999987641100 0000 000 00001223457899999999999999999 899999999999999999
Q ss_pred HHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCC-eEEEcCCccEEEEEecCCCeEeeeecCCCCCCHH
Q 012955 296 ALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDGK-SFTYNANINIAVAVAINGGLITPVLQDADKLDLY 368 (452)
Q Consensus 296 ~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ 368 (452)
++|++++. .++|+++||+||++.||++||.+|++|+.++ .+++++++|||+||++++||++|||||+|++++.
T Consensus 214 ~lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~ 293 (404)
T COG0508 214 ALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLA 293 (404)
T ss_pred HHHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHH
Confidence 99999985 2799999999999999999999997775222 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEE
Q 012955 369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448 (452)
Q Consensus 369 eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltl 448 (452)
+|++++.+|..|+|+|+|+++||+||||||||+|+||...|+||||+||+||||+|++.++||++ +|+|++|+||+|+|
T Consensus 294 ~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsl 372 (404)
T COG0508 294 EIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSL 372 (404)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999996 56999999999999
Q ss_pred Ee
Q 012955 449 IS 450 (452)
Q Consensus 449 t~ 450 (452)
||
T Consensus 373 s~ 374 (404)
T COG0508 373 SY 374 (404)
T ss_pred cc
Confidence 98
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2e-75 Score=635.80 Aligned_cols=383 Identities=25% Similarity=0.342 Sum_probs=304.4
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.++|+||+|| |+||+|++|+|++||.|++||.||+||+||++++|+||++|+|.++++++|+.|++|++|+.|.+++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 56899999999 9999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcc
Q 012955 137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV-A-ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR 214 (452)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~Gr 214 (452)
++... .. ... .+....+.+.....+.+.+.+.. . ......+.++++||+||+||++|||||+.|.|||++||
T Consensus 283 ~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 356 (633)
T PRK11854 283 AAPAA--AP--AKQ--EAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGR 356 (633)
T ss_pred CCccc--cc--ccc--CCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCe
Confidence 32100 00 000 00000000000000000000000 0 00011123678999999999999999999999999999
Q ss_pred cchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCC-C-CCCCCC--CCCCceeccchhhHHHHHHhhhc-CCccEEEEEEE
Q 012955 215 ITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPA-A-APAAPL--LPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYP 288 (452)
Q Consensus 215 I~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~e 288 (452)
|+++||++|+..... ....+.+ .+.+...+. . .+..+. ....+.+||+++||.|+++|.+| +++|||+++.+
T Consensus 357 I~~~DV~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~e 434 (633)
T PRK11854 357 ILKEDVQAYVKDAVKRAEAAPAA--AAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDK 434 (633)
T ss_pred EeHHHHHHHhhccccccccCCcc--cccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 999999999753211 0000000 000000000 0 000000 11235689999999999999999 79999999999
Q ss_pred EechHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeee
Q 012955 289 IITDALDALYEKVKP--------KGVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVL 359 (452)
Q Consensus 289 id~~~l~~lr~~~~~--------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI 359 (452)
+|+++|+++|++++. .++|+++||+||+++||++||+||++|++ ++++++++++||||||++++||++|||
T Consensus 435 vD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi 514 (633)
T PRK11854 435 ADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVF 514 (633)
T ss_pred EEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeE
Confidence 999999999998762 27899999999999999999999999963 568999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEE
Q 012955 360 QDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFG 439 (452)
Q Consensus 360 ~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~ 439 (452)
||++++||.+|++++++|.+|+|+|+|+++|++||||||||+||||+++|+|||||||+|||++|+++++|+++ +|.++
T Consensus 515 ~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~ 593 (633)
T PRK11854 515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFA 593 (633)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 68999
Q ss_pred EEeEEEEEEEe
Q 012955 440 VKSKMLVSLIS 450 (452)
Q Consensus 440 ~~~~m~ltlt~ 450 (452)
+|++|+|||||
T Consensus 594 ~r~~m~lslt~ 604 (633)
T PRK11854 594 PRLMLPLSLSY 604 (633)
T ss_pred EEEEEEEeEEc
Confidence 99999999998
No 11
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=4.3e-74 Score=596.26 Aligned_cols=336 Identities=23% Similarity=0.374 Sum_probs=273.4
Q ss_pred ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++||.|++|++|++|++.
T Consensus 89 ~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 89 GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 33479999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred hhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCccc
Q 012955 136 EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI 215 (452)
+++.+ .. . +....+.. ..+.+.+ +.......++.++|++|+.+ .++|+.+.
T Consensus 169 ~~~~~---~~--~-----~~~~~~~~---~~~~~~~-----~~~~~~~~~v~asp~~r~~~----------~~~~~~~~- 219 (463)
T PLN02226 169 EDAAS---QV--T-----PSQKIPET---TDPKPSP-----PAEDKQKPKVESAPVAEKPK----------APSSPPPP- 219 (463)
T ss_pred Ccccc---cc--C-----ccCCCCCC---CCCCCCC-----ccccccccCCCcchhhcccc----------CCCCCCCC-
Confidence 32110 00 0 00000000 0000000 00000112456777776532 12222110
Q ss_pred chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHH
Q 012955 216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDAL 294 (452)
Q Consensus 216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l 294 (452)
. . . .. .+ ..+.....+.+|++++||.||++|++| +++||||++.|+|+++|
T Consensus 220 ----------~--~------~--~~----~~----~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L 271 (463)
T PLN02226 220 ----------K--Q------S--AK----EP----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNL 271 (463)
T ss_pred ----------c--c------c--cc----Cc----ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHH
Confidence 0 0 0 00 00 000000135689999999999999999 79999999999999999
Q ss_pred HHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCH
Q 012955 295 DALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDL 367 (452)
Q Consensus 295 ~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl 367 (452)
+++|+++++ .++|+++||+||+++||++||++|++|+ ++.|+++++|||||||++++||++|||||+|+|||
T Consensus 272 ~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl 350 (463)
T PLN02226 272 MKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID-GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNF 350 (463)
T ss_pred HHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEc-CCEEEEeCcccEEEEEECCCCEEeccCCCcccCCH
Confidence 999999984 1799999999999999999999999996 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEE
Q 012955 368 YLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVS 447 (452)
Q Consensus 368 ~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~lt 447 (452)
.||++++++|++|+|+|+|+++||+||||||||+||||+++|+|||||||+||||||+++++||+. ||+|++|++|+||
T Consensus 351 ~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~ls 429 (463)
T PLN02226 351 AEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVA 429 (463)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999996 7999999999999
Q ss_pred EEe
Q 012955 448 LIS 450 (452)
Q Consensus 448 lt~ 450 (452)
|||
T Consensus 430 Ls~ 432 (463)
T PLN02226 430 LTY 432 (463)
T ss_pred Eec
Confidence 998
No 12
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=8.2e-73 Score=607.14 Aligned_cols=387 Identities=30% Similarity=0.443 Sum_probs=304.2
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+.+|+||+||+ |+||+|++|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+.|++|++|+.+.+.+
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 357999999999 9999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcc-ccChhHHHHHhhcCCCccccccCCCCcc
Q 012955 137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE-PKKVAESAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGPFGR 214 (452)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~asP~aRklA~e~gIdL~~V~gtG~~Gr 214 (452)
++.... ...... ..+....+.++ ..+.... .....+......++. ++||+||+||+||||||+.|.|||++||
T Consensus 197 ~~~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 271 (547)
T PRK11855 197 AAPAAA--AAPAAA-APAAAAAAAPA--PAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGR 271 (547)
T ss_pred Cccccc--cCCCCC-CCccccccCCC--CCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCc
Confidence 321000 000000 00000000000 0000000 000000001112244 7999999999999999999999999999
Q ss_pred cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEE
Q 012955 215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA--P--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPI 289 (452)
Q Consensus 215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~ei 289 (452)
|+++||++|+.........+...+...+.......... . .....+.+||+++||.|+++|++| +++||||++.+|
T Consensus 272 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~ev 351 (547)
T PRK11855 272 ITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEA 351 (547)
T ss_pred EeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 99999999975321110000000000000000000000 0 001235689999999999999999 799999999999
Q ss_pred echHHHHHHHHhCC----C--CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeeecCC
Q 012955 290 ITDALDALYEKVKP----K--GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQDA 362 (452)
Q Consensus 290 d~~~l~~lr~~~~~----~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a 362 (452)
|+++|+++|+++++ . ++||++||+||+++||++||+||++|++ ++.+++++++|||+||++++||++|||+|+
T Consensus 352 d~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~ 431 (547)
T PRK11855 352 DITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDV 431 (547)
T ss_pred EChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCC
Confidence 99999999999874 1 6999999999999999999999999975 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEe
Q 012955 363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKS 442 (452)
Q Consensus 363 ~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~ 442 (452)
+++|+.+|+++++++++|+|+|+|.++|++||||||||+|+||.++|+|||||||+||||+|+++++|++. +|.+.+|+
T Consensus 432 ~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~-~~~~~~r~ 510 (547)
T PRK11855 432 DKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWD-GKEFVPRL 510 (547)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeee-CCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999774 78999999
Q ss_pred EEEEEEEe
Q 012955 443 KMLVSLIS 450 (452)
Q Consensus 443 ~m~ltlt~ 450 (452)
+|+|||+|
T Consensus 511 ~m~lslt~ 518 (547)
T PRK11855 511 MLPLSLSY 518 (547)
T ss_pred EEEEeEEc
Confidence 99999998
No 13
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.2e-72 Score=581.76 Aligned_cols=368 Identities=26% Similarity=0.376 Sum_probs=283.9
Q ss_pred cccccccCccccccccCCCCCCCCccccccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 20 SFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
|..++....++|-.+..-|++-+...+ ..+..+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK 85 (418)
T PTZ00144 12 PLLSSVKGMFRRFSLRKLQPACSAHFS------KSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDK 85 (418)
T ss_pred cccccchhHHHHHhhhccchhhhhhcc------cccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcc
Confidence 333444444555544443443222211 23456789999999999999999999999999999999999999999
Q ss_pred eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012955 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179 (452)
Q Consensus 100 ~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 179 (452)
++++|+||++|+|.++++++|+.|++|++|+.|++.+++.. .. ... .....+..+ .+... .
T Consensus 86 ~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~---~~--~~~---~~~~~~~~~---~~~~~--~------ 146 (418)
T PTZ00144 86 VSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPA---AA--PAA---AAAAKAEKT---TPEKP--K------ 146 (418)
T ss_pred eEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCcccc---cc--ccc---cCCCCCccC---CCCCC--C------
Confidence 99999999999999999999999999999999975443211 00 000 000000000 00000 0
Q ss_pred CCCCCccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 012955 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGST 259 (452)
Q Consensus 180 ~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (452)
...|.+|++++++++++..+... .. ... + .+.+. + .+ ......+
T Consensus 147 -------~~~p~~~~~a~~~~~a~p~vr~~---------------~~-~~~-----~--~~~~~--~--~~--~~~~~~~ 190 (418)
T PTZ00144 147 -------AAAPTPEPPAASKPTPPAAAKPP---------------EP-APA-----A--KPPPT--P--VA--RADPRET 190 (418)
T ss_pred -------CCCCccccccccccCCchhhhcc---------------cc-CCC-----C--CCCCC--C--cc--ccCCCce
Confidence 00133344444444444333100 00 000 0 00000 0 00 0000134
Q ss_pred eeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceee
Q 012955 260 VVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCK 331 (452)
Q Consensus 260 ~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~ 331 (452)
.+|++++||+||++|++| +++||||++.++|+++|.++|+++++ .++|+++||+||++.||++||++|++|+
T Consensus 191 ~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~ 270 (418)
T PTZ00144 191 RVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYID 270 (418)
T ss_pred eeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEc
Confidence 589999999999999999 79999999999999999999999984 1799999999999999999999999996
Q ss_pred CCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEe
Q 012955 332 DGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411 (452)
Q Consensus 332 ~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~p 411 (452)
++++++++++||||||++++||++|||||+|++||.||++++++|++|+|+|+|+++||+||||||||+||||+++|+|
T Consensus 271 -~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tp 349 (418)
T PTZ00144 271 -GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTP 349 (418)
T ss_pred -CCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeee
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 412 ii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
||||||+||||+|+++++||+. ||++++|++|+|||||
T Consensus 350 IInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~ 387 (418)
T PTZ00144 350 IINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALTY 387 (418)
T ss_pred eecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEec
Confidence 9999999999999999999996 7999999999999998
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.5e-71 Score=579.29 Aligned_cols=375 Identities=40% Similarity=0.593 Sum_probs=305.5
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
..+++||+||++|++|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++
T Consensus 2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999976554
Q ss_pred -hHHHHHhhhhccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCccc
Q 012955 138 -EVAQAKAKAASAGAAAPASHPVTSTPVPAVS-PPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI 215 (452)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI 215 (452)
+.+.... .....+. ..+... ..+. ....+.........+.+.++||++|+||+||||||++|.|||++|||
T Consensus 82 ~~~~~~~~----~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri 154 (411)
T PRK11856 82 AEAAAAAE----AAPEAPA-PEPAPA--AAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRI 154 (411)
T ss_pred CccccccC----CCCCCCC-CCCCCC--CCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeE
Confidence 2111100 0000000 000000 0000 00000000000011123479999999999999999999999999999
Q ss_pred chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHH
Q 012955 216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDAL 294 (452)
Q Consensus 216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l 294 (452)
+++||++|+....... . +... . + ...........+.+|++++||.|+++|.+| .++|||+++.+||+++|
T Consensus 155 ~~~Dv~~~~~~~~~~~----~-~~~~--~-~-~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 155 TKEDVEAAAAAAAPAA----A-AAAA--A-A-AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred EHHHHHHHHhcccccC----C-CCCC--C-C-CCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 9999999985421100 0 0000 0 0 000000011246789999999999999999 89999999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHH
Q 012955 295 DALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQ 372 (452)
Q Consensus 295 ~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~ 372 (452)
.++|+++++. ++|+++||+||+++||++||+||++|.+ +.+++|+++|||+||++++||++|||++++++++.+|++
T Consensus 226 ~~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~ 304 (411)
T PRK11856 226 LALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDD-DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAR 304 (411)
T ss_pred HHHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEeC-CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHH
Confidence 9999999754 8999999999999999999999999974 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 373 ~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
+++++++++|+|+|.++|+++|||||||+|+||..+|+||||+||+|||++|+++++||+. ||++++|.+|+|+|+|
T Consensus 305 ~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~ 381 (411)
T PRK11856 305 EIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSF 381 (411)
T ss_pred HHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999986 7999999999999997
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.5e-69 Score=527.54 Aligned_cols=372 Identities=26% Similarity=0.396 Sum_probs=310.8
Q ss_pred ecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 54 VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 54 ~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.......+.+-++|+++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.|+|+|++|+...||.+.+|.+|..++
T Consensus 60 s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 60 SNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred cccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cchhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCc
Q 012955 134 ETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG 213 (452)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~G 213 (452)
.++.... .+. . .+.|... .+ .. ... ........+||++||||+|+||||+.|+|||++|
T Consensus 140 ve~~~ds-~e~----s------~es~~vs---~~--~~----~~~-~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdG 198 (474)
T KOG0558|consen 140 VEDSQDS-PED----S------DESPAVS---LG--ES----KQG-EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDG 198 (474)
T ss_pred eccCcCC-ccc----C------Ccccccc---CC--CC----chh-hhhccccccCHHHHHHHHHhCCceEeeeccCCCC
Confidence 5432110 000 0 0000000 00 00 000 0112456899999999999999999999999999
Q ss_pred ccchhhHHHhhccCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCceeccchhhHHHHHHhhhcCCccEEEEEEEE
Q 012955 214 RITPEDVEKAAGIAPSKSVAPSAAPAALPK----PAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPI 289 (452)
Q Consensus 214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~ei 289 (452)
||.|+||++|+.+....- ..+.+..- +..+........+....+|+.+.+|+|.+.|++++.||||.+..||
T Consensus 199 RvLKeDvL~fl~q~pg~~----~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEI 274 (474)
T KOG0558|consen 199 RVLKEDVLRFLGQVPGFV----TDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEI 274 (474)
T ss_pred cchHHHHHHHhccCCCCc----cCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCcccccccc
Confidence 999999999998642210 00111100 0000111122233456799999999999999999999999999999
Q ss_pred echHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCC
Q 012955 290 ITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDA 362 (452)
Q Consensus 290 d~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a 362 (452)
|+|.|.+||+.+|.. |+|+++||+||++.||.+||.+|++++.. ..|+++...|||||+|++.||+||.|+|+
T Consensus 275 n~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~ 354 (474)
T KOG0558|consen 275 NCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNV 354 (474)
T ss_pred ChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCcccc
Confidence 999999999999853 78999999999999999999999999643 57999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEe
Q 012955 363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKS 442 (452)
Q Consensus 363 ~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~ 442 (452)
+.+||.||++++++|.+..+.|+|.++|+.|||||+||+|.+|..+..|+|+|||+||.++|+|+.-|-.++.|++....
T Consensus 355 q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~ 434 (474)
T KOG0558|consen 355 QSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPAS 434 (474)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEEEEEEe
Q 012955 443 KMLVSLIS 450 (452)
Q Consensus 443 ~m~ltlt~ 450 (452)
+|.++++.
T Consensus 435 IM~VswsA 442 (474)
T KOG0558|consen 435 IMMVSWSA 442 (474)
T ss_pred EEEEEeec
Confidence 99999874
No 16
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=4.3e-65 Score=509.10 Aligned_cols=262 Identities=27% Similarity=0.400 Sum_probs=225.3
Q ss_pred cccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCC-CCCC--CCCCC-CCCCCCcee
Q 012955 186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPK-PAPA--AAPAA-PLLPGSTVV 261 (452)
Q Consensus 186 ~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~~~~~~~ 261 (452)
+++||+||+||+||||||+.|+|||++|||+++||++|+........ +.+ +.+.+. ...+ ..+.. .+....+.+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPT-PAE-AASVSSAQQAAKTAAPAAAPPKLEGKRE 79 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccC-Ccc-ccccccccccccccCCcccccCCCceec
Confidence 57999999999999999999999999999999999999753211000 000 000000 0000 00000 011123568
Q ss_pred ccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeC-
Q 012955 262 PFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD- 332 (452)
Q Consensus 262 p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~- 332 (452)
|++++|+.|+++|++| +++|||++..+||+++|+++|+++++. ++|+++||+||++.||++||.+|++|++
T Consensus 80 ~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~ 159 (306)
T PRK11857 80 KVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEA 159 (306)
T ss_pred cCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCC
Confidence 9999999999999999 799999999999999999999998741 6999999999999999999999999975
Q ss_pred CCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEee
Q 012955 333 GKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412 (452)
Q Consensus 333 ~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pi 412 (452)
++.++++++|||||||++++||++|||+|+|+|||.||+++|++|.+|+|+|+|+++||+||||||||+||||+.+|+||
T Consensus 160 ~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpi 239 (306)
T PRK11857 160 TSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPV 239 (306)
T ss_pred CCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 413 i~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
|||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus 240 In~pq~aILgvG~i~~~pvv~-~g~i~~r~~m~lslt~ 276 (306)
T PRK11857 240 INYPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAA 276 (306)
T ss_pred cCCCccceeecccceEEeEEE-CCEEEEeeeeEEeEec
Confidence 999999999999999999995 8999999999999997
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=4.2e-65 Score=517.23 Aligned_cols=263 Identities=30% Similarity=0.476 Sum_probs=226.8
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPF 263 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 263 (452)
.++++||+||+||+||||||+.|.|||++|||+++||++|+........ ..+ +.+.+.....+.. .......+.+|+
T Consensus 47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~v~l 123 (347)
T PRK14843 47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDS-IKS-PAQIEKVEEVPDN-VTPYGEIERIPM 123 (347)
T ss_pred ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCcc-ccC-CCCCccccCCCcc-cccCCcceeeeC
Confidence 4668999999999999999999999999999999999999753211000 000 0000000000000 001112456899
Q ss_pred chhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeC-CC
Q 012955 264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKD-GK 334 (452)
Q Consensus 264 s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~ 334 (452)
+++||.|+++|++| +++||||+..+||+++|+++|+++++ .++|+++||+||++.||++||.||++|++ ++
T Consensus 124 ~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 203 (347)
T PRK14843 124 TPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGK 203 (347)
T ss_pred cHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCC
Confidence 99999999999999 89999999999999999999999863 17999999999999999999999999975 35
Q ss_pred eEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecC
Q 012955 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP 414 (452)
Q Consensus 335 ~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ 414 (452)
.++++++|||||||++++||++|||||+|+|||.||++++++|++|+|+|+|+++||+||||||||+||||+++|+||||
T Consensus 204 ~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIIn 283 (347)
T PRK14843 204 TIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIIN 283 (347)
T ss_pred eEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 415 ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
|||+||||+|+++++||++ ||++++|++|+|||||
T Consensus 284 pPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~ 318 (347)
T PRK14843 284 QPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTI 318 (347)
T ss_pred CCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEec
Confidence 9999999999999999996 7999999999999997
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=3e-65 Score=499.73 Aligned_cols=340 Identities=25% Similarity=0.393 Sum_probs=267.2
Q ss_pred ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
....++..|.++++++||.|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|..|+.|+.|...
T Consensus 70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred hhhHHHHHhhhhccCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCc
Q 012955 136 EAEVAQAKAKAASAGAAAPASHPVTSTP--VPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG 213 (452)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~G 213 (452)
.+..... .. +|.+..|..++ ++.|.+.+. + ....+.|.+
T Consensus 150 aApa~~~-~~-------apa~~~pk~~~a~~a~p~~~s~----~------~p~~~apv~--------------------- 190 (457)
T KOG0559|consen 150 AAPAKGG-AS-------APAKAEPKTAPAAAAPPKPSSK----P------PPKEAAPVA--------------------- 190 (457)
T ss_pred CCCcccc-cc-------CCCccCCCCCCCCCCCCCccCC----C------CccccCCCC---------------------
Confidence 3321110 00 11111111100 000100000 0 000000000
Q ss_pred ccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955 214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPA-------AAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV 285 (452)
Q Consensus 214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~ 285 (452)
. .+++ .+...+.++++..++ +.....+...+.+++|++||+.||.+|.+| .+....+.
T Consensus 191 ------------e-~p~~-p~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTT 256 (457)
T KOG0559|consen 191 ------------E-SPPA-PSSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTT 256 (457)
T ss_pred ------------C-CCCC-CCCCCCCCccccCccccCCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 0 0000 000000000000000 000111122356899999999999999999 67777888
Q ss_pred EEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeee
Q 012955 286 GYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV 358 (452)
Q Consensus 286 ~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPV 358 (452)
+.||||++|+++|+++++. |+.|+.+|+||++.||++.|.+|+.++ |+.|+|++++||+|||++++||++||
T Consensus 257 FNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId-g~~iVYRDyvDISvAVaTpkGLVvPV 335 (457)
T KOG0559|consen 257 FNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID-GDDIVYRDYVDISVAVATPKGLVVPV 335 (457)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec-CCeeEEeecceeEEEeecCCceeeee
Confidence 9999999999999999863 688899999999999999999999995 77999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcE
Q 012955 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF 438 (452)
Q Consensus 359 I~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i 438 (452)
|||++.|++.||..+|..|..|||+|+|..+||.||||||||-|.||..+.||||||||+||||+++|.+|||+. +|++
T Consensus 336 iRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~V 414 (457)
T KOG0559|consen 336 IRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQV 414 (457)
T ss_pred ecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 7999
Q ss_pred EEEeEEEEEEEe
Q 012955 439 GVKSKMLVSLIS 450 (452)
Q Consensus 439 ~~~~~m~ltlt~ 450 (452)
++|+||+|.|||
T Consensus 415 v~RPMMYvALTY 426 (457)
T KOG0559|consen 415 VPRPMMYVALTY 426 (457)
T ss_pred eeccceEEEeec
Confidence 999999999998
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=3.4e-53 Score=409.15 Aligned_cols=193 Identities=39% Similarity=0.595 Sum_probs=170.2
Q ss_pred CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcce
Q 012955 257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNAS 329 (452)
Q Consensus 257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~ 329 (452)
..+++|++++||+||++|.+| +++||||+..+||+++|+++|+++++. ++|+++||+||++.||++||.||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 357899999999999999999 599999999999999999999998752 8999999999999999999999999
Q ss_pred eeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955 330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409 (452)
Q Consensus 330 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f 409 (452)
|+++++|++++++||||||++++||++|||+|+|++|+.||+++++++++|+|+|+|+++|++||||||||+|+||+++|
T Consensus 83 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~ 162 (231)
T PF00198_consen 83 WDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESF 162 (231)
T ss_dssp EETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCE
T ss_pred cccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCccee
Confidence 97544599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
+|||||||+|||++|+++++|++ +||+++++++|+|||||
T Consensus 163 ~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~ 202 (231)
T PF00198_consen 163 TPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTF 202 (231)
T ss_dssp E----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEE
T ss_pred EccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEec
Confidence 99999999999999999999999 58999999999999998
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.4e-44 Score=389.30 Aligned_cols=193 Identities=27% Similarity=0.363 Sum_probs=182.3
Q ss_pred CceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955 258 STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASC 330 (452)
Q Consensus 258 ~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~ 330 (452)
.+.+|+++++++|+++|..|+++|+++..++|+++.|+++|..+|+ .|+|||+||+||+++||++||.+|++|
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 4678999999999999999999999999999999999999999973 289999999999999999999999999
Q ss_pred e--CCC-eEEEcCCccEEEEEecC-----CCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCC
Q 012955 331 K--DGK-SFTYNANINIAVAVAIN-----GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402 (452)
Q Consensus 331 ~--~~~-~i~~~~~vnIgvAV~~~-----~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG 402 (452)
. ||+ .++++++||||||||++ +||+|||||+||+|++.||.+++++|++|||+|||+++||+||||||||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 7 553 59999999999999998 589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeecCCCceEEEEecCceeEEEEc-----CCCcEEEEeEEEEEEEe
Q 012955 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-----ADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 403 ~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~-----~dg~i~~~~~m~ltlt~ 450 (452)
|||+.+|+||||+||+||||||++...+++. .+|++.++++|+|||||
T Consensus 275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTy 327 (1228)
T PRK12270 275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTY 327 (1228)
T ss_pred cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeec
Confidence 9999999999999999999999999888873 24689999999999997
No 21
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.76 E-value=2.7e-18 Score=174.44 Aligned_cols=120 Identities=33% Similarity=0.522 Sum_probs=102.9
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+++.+.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV 81 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999965321
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccch
Q 012955 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~ 217 (452)
. . + .....++|++++++++ ++++..+.+++..+++..
T Consensus 82 ~----------------~-----------~---------------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (371)
T PRK14875 82 S----------------D-----------A---------------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGG 118 (371)
T ss_pred C----------------c-----------c---------------cccccccchhhhcccc-ccchhhccCCCCcceEcC
Confidence 0 0 0 0123578888888888 899998888888777765
Q ss_pred hhH
Q 012955 218 EDV 220 (452)
Q Consensus 218 ~DV 220 (452)
.++
T Consensus 119 ~~i 121 (371)
T PRK14875 119 RTV 121 (371)
T ss_pred cEE
Confidence 555
No 22
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.76 E-value=1.9e-18 Score=138.28 Aligned_cols=74 Identities=38% Similarity=0.691 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
.+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999986
No 23
>PRK06748 hypothetical protein; Validated
Probab=99.65 E-value=7.4e-16 Score=125.34 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=60.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES-DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet-dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
|+|.+|++++||.|++||+|++||| ||+.++|+||.+|+|.++++++||.|++|++|+.|++
T Consensus 13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 9999999999999999999999999 8999999999999999999999999999999999954
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.61 E-value=2.4e-14 Score=151.25 Aligned_cols=79 Identities=44% Similarity=0.764 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEecchh
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAETEA 137 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~~~~ 137 (452)
.+|+||+||++|+||+|.+|+|++||.|++||.|++|||||++++|+|+.+|+|.++++++|+ .|++|++|++|+++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 589999999999999999999999999999999999999999999999999999999999995 7999999999976554
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.57 E-value=1.4e-14 Score=114.83 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|.+|++++||.|++||.|++||+||++++|+||.+|+|.++++++|+.+..|++|+.|+
T Consensus 11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.52 E-value=7.2e-14 Score=110.87 Aligned_cols=72 Identities=29% Similarity=0.548 Sum_probs=69.5
Q ss_pred EEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 61 i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999875
No 27
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.49 E-value=7.8e-14 Score=125.05 Aligned_cols=61 Identities=21% Similarity=0.493 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|++.+.+|++||+|++||.||.||.|||+++|+||.+|+|.+|++++||.|..|++|+.|.
T Consensus 79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.47 E-value=1.4e-13 Score=151.00 Aligned_cols=75 Identities=29% Similarity=0.432 Sum_probs=72.8
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+|.||+|| |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|++|+++
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999765
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.46 E-value=2.6e-13 Score=107.15 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|.+|++++||+|++||+|++||+||+.+++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 30
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.43 E-value=3.5e-13 Score=146.64 Aligned_cols=77 Identities=32% Similarity=0.613 Sum_probs=74.6
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+|.||+||.+|++|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|++|++|+.|...
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999754
No 31
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.37 E-value=2.1e-12 Score=113.93 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=59.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|+|.+|++++||.|++||.|+++|+||++++|.||++|+|.++++++||.|..|++|+.|
T Consensus 70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 32
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.36 E-value=5.2e-13 Score=93.33 Aligned_cols=38 Identities=47% Similarity=0.670 Sum_probs=34.3
Q ss_pred ccccChhHHHHHhhcCCCccccccCCCCcccchhhHHH
Q 012955 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222 (452)
Q Consensus 185 ~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~ 222 (452)
++.+||+||+||+|+|||+++|.|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 57899999999999999999999999999999999985
No 33
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.35 E-value=3e-12 Score=138.59 Aligned_cols=78 Identities=27% Similarity=0.563 Sum_probs=74.3
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.+|+||++|+ |++|+|++|+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|+.|++.+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~ 80 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence 5799999999 99999999999999999999999999999999999999999999999999999999999999975443
No 34
>PRK07051 hypothetical protein; Validated
Probab=99.32 E-value=1.1e-11 Score=100.65 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=63.5
Q ss_pred EEEEcCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEE
Q 012955 59 REIFMPALSSTMTEGKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~ 131 (452)
.+|..|. .|++.+ |++++||.|++||.|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 4566662 278888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 012955 132 LA 133 (452)
Q Consensus 132 i~ 133 (452)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 84
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.32 E-value=5.2e-12 Score=114.65 Aligned_cols=60 Identities=27% Similarity=0.503 Sum_probs=59.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|+|.+|++++||.|++||.|+++|+|||+++|.||++|+|.++++++|+.|..|++|+.|
T Consensus 93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 36
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.31 E-value=1.9e-11 Score=118.22 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=58.2
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|++.+ |+|++||.|++||.|++||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 206 Gtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 206 GTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 66666 99999999999999999999999999999999999999999999999999999984
No 37
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.29 E-value=7.3e-12 Score=135.31 Aligned_cols=75 Identities=35% Similarity=0.593 Sum_probs=72.0
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+|+||+||.. .+|+|++|+|++||.|++||+|++||+||+.++|+|+++|+|.++++++|+.|.+|++|++|...
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 99999999999999999999999999999999999999999999999999999999999999643
No 38
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.28 E-value=2.3e-11 Score=93.82 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=59.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
.|+|.+|++++||.|++||.|++++++|+..+|+||++|+|.++++++|+.|..|++|+.|
T Consensus 7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4999999999999999999999999999999999999999999999999999999999875
No 39
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.24 E-value=1.9e-11 Score=111.49 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=58.8
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|++.+ |+|++||.|++||.||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 78886 99999999999999999999999999999999999999999999999999999873
No 40
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.22 E-value=4.2e-11 Score=129.76 Aligned_cols=62 Identities=24% Similarity=0.454 Sum_probs=60.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 41
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.19 E-value=6e-11 Score=108.17 Aligned_cols=61 Identities=20% Similarity=0.412 Sum_probs=58.5
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|++.. |+|++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+.|..|++|+.|.
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 77876 99999999999999999999999999999999999999999999999999999873
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.18 E-value=2.9e-10 Score=87.46 Aligned_cols=73 Identities=47% Similarity=0.816 Sum_probs=70.3
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
++.+|+++....+|+|.+|+++.|+.|..||.++.++++|+...+.++.+|++.+.++.+|+.+..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874
No 43
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.03 E-value=5.1e-10 Score=130.50 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 44
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.02 E-value=6.9e-10 Score=120.57 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=56.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI 129 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l 129 (452)
|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999975
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.99 E-value=1.2e-09 Score=126.47 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 46
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.98 E-value=1.7e-09 Score=117.67 Aligned_cols=60 Identities=27% Similarity=0.527 Sum_probs=59.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|+|++|+|++||.|++||+|++||+|||+.+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 47
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.88 E-value=3.2e-09 Score=111.70 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|+.+.|++|+.|.+||+|+++|.|||+..|+||.+|+|+++.+.+|+.|..|++|++++
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 48
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.86 E-value=6e-09 Score=113.59 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=60.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.|+|++|+|++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 39999999999999999999999999999999999999999999999999999999999985
No 49
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.81 E-value=1.4e-08 Score=118.15 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 50
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.78 E-value=7.4e-09 Score=112.17 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=70.1
Q ss_pred cccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCC
Q 012955 47 SRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVG 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G 126 (452)
.+++....+..++--.|| |.|+++.|+.||+|++||+|+.+|.|||+..|.||.+|+|.+++|..||.|..|
T Consensus 1070 ~r~KAd~~Np~higApmp--------G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~g 1141 (1149)
T COG1038 1070 ARRKADPGNPGHIGAPMP--------GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGG 1141 (1149)
T ss_pred cccccCCCCccccCCCCC--------CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccC
Confidence 344445555666666677 999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEe
Q 012955 127 AAIGILA 133 (452)
Q Consensus 127 ~~l~~i~ 133 (452)
++|.+++
T Consensus 1142 DLLi~~~ 1148 (1149)
T COG1038 1142 DLLVVVE 1148 (1149)
T ss_pred ceEEEcc
Confidence 9999875
No 51
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.60 E-value=6.1e-08 Score=103.36 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=70.4
Q ss_pred cccccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccC
Q 012955 45 SRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~ 124 (452)
...|++.++.....+--.|| |+|+++.|++|++|++||+||++..|||++-|.||.+|+|+++++..|+.+.
T Consensus 1095 ~v~~PkA~~~~~g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~ 1166 (1176)
T KOG0369|consen 1095 IVTRPKADPGVKGHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVE 1166 (1176)
T ss_pred hcccccCCCCCcccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCccc
Confidence 34455555555554455566 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe
Q 012955 125 VGAAIGILA 133 (452)
Q Consensus 125 ~G~~l~~i~ 133 (452)
.|++|++++
T Consensus 1167 g~DL~~~~E 1175 (1176)
T KOG0369|consen 1167 GGDLIVELE 1175 (1176)
T ss_pred ccceEEEcc
Confidence 999999885
No 52
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=98.49 E-value=1.4e-05 Score=76.28 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=114.4
Q ss_pred hhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEec-CC
Q 012955 274 MIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI-NG 352 (452)
Q Consensus 274 m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~-~~ 352 (452)
.-....-|.|.++.+||+|+|.+..+ ++|+++...++.++.+|+.++|+|+-++.+++++++++.++.+.+|-. ++
T Consensus 19 ~f~~~~~p~~svT~~lDvT~l~~~~K---~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~~ 95 (206)
T PF00302_consen 19 FFRNFDNPYFSVTVNLDVTNLYKYAK---EKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKDD 95 (206)
T ss_dssp HHTTTSBEEEEEEEEEE-HHHHHHHH---HTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETTT
T ss_pred HHhcCCCceEecceeEEhHHHHHHHH---HcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCCC
Confidence 33446689999999999999876544 458999999999999999999999999987668999999999999986 45
Q ss_pred CeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCcCc-cCCCcEEEecCCCCCCCCeE-eecCCCc--eEEEEecCce
Q 012955 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHE-YNSGTFTLSNLGMFGVDRFD-AILPPGQ--GAIMAVGASK 427 (452)
Q Consensus 353 GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~~d-~~ggTftISNlG~~Gv~~f~-pii~ppq--~aiL~vG~i~ 427 (452)
+...-+.-. -.-++.++.+...+.++++++. .+.++. .....|-+|++=-+.=++++ ++-+.+. .-++..|...
T Consensus 96 ~tFs~~~~~-y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~ 174 (206)
T PF00302_consen 96 ETFSFCWTE-YDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYF 174 (206)
T ss_dssp TEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--E
T ss_pred CeEEEEEec-CCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeE
Confidence 655433222 3458999999999999998663 455443 45568999988766655554 4443332 3578888776
Q ss_pred eEEEEcCCCcEEEEeEEEEEEEe
Q 012955 428 PTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 428 ~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
++ +| |-+|+|++.+
T Consensus 175 ~~-----~g----r~~mPvsiqv 188 (206)
T PF00302_consen 175 EE-----NG----RLLMPVSIQV 188 (206)
T ss_dssp EE-----TT----EEEEEEEEEE
T ss_pred eE-----CC----EEEEEEEEEE
Confidence 52 34 5678888865
No 53
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.24 E-value=2.3e-06 Score=71.80 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=50.3
Q ss_pred eeEEEEcCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc
Q 012955 57 KIREIFMPALSSTMTEGKIVS-WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES 122 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~-w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~ 122 (452)
....|-|-+.+..+ -|+|.. |++++||.|++||.|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 14 ~~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 14 GIATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred cEEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 34455554444332 477777 667779999999999999999999999999999999887665543
No 54
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.18 E-value=1.4e-06 Score=91.05 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=59.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|.|.+++|+.||.|++||.|++++.|||+.-+++|.+|++..+.++.|+.|..|.+|.+++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999873
No 55
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=98.11 E-value=0.00039 Score=67.06 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=113.9
Q ss_pred hHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEE
Q 012955 267 QAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV 346 (452)
Q Consensus 267 rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgv 346 (452)
||.--..-.....-| |.++.+||+++|.+. +|++|+++...++.|+.+|+-++|+|+-++.+ +.++.++.+|.+.
T Consensus 18 RkehF~~f~~~~~~~-fsiT~~iDiT~l~~~---~K~~~~~fy~~~ly~v~kavN~~~eFR~r~~~-~~v~~~D~i~ps~ 92 (219)
T PRK13757 18 RKEHFEAFQSVAQCT-YNQTVQLDITAFLKT---VKKNKHKFYPAFIHILARLMNAHPEFRMAMKD-GELVIWDSVHPCY 92 (219)
T ss_pred cHHHHHHHhcCCCCc-eEEEEEEEHHHHHHH---HHHcCCChHHHHHHHHHHHHhcCHhHheEEEC-CeEEEEeEEeeeE
Confidence 444444443333333 999999999998754 44558999999999999999999999999964 5788899999999
Q ss_pred EEecCC-CeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCcCccCCCcEEEecCCCCCCCCeE-eecCCC--ceEEE
Q 012955 347 AVAING-GLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHEYNSGTFTLSNLGMFGVDRFD-AILPPG--QGAIM 421 (452)
Q Consensus 347 AV~~~~-GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~~d~~ggTftISNlG~~Gv~~f~-pii~pp--q~aiL 421 (452)
+|-..+ ++..- +.-.-.-++.++.+.....++++++. .+-+.......|-||.+=-+.=+.|+ ++-+.. ..-++
T Consensus 93 Ti~~~~~~tFs~-~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~i 171 (219)
T PRK13757 93 TVFHEQTETFSS-LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVF 171 (219)
T ss_pred EEEeCCCceEEE-EEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEE
Confidence 999655 44442 22223456788888888778888775 45444455668877766543333322 232222 12367
Q ss_pred EecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 422 AVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 422 ~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
..|...++ +| |-+|+|++.+
T Consensus 172 t~GKy~~~-----~g----r~~mPvSvqv 191 (219)
T PRK13757 172 TMGKYYTQ-----GD----KVLMPLAIQV 191 (219)
T ss_pred EeeceEEE-----CC----EEEEEEEEEE
Confidence 77766531 34 5678888875
No 56
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.93 E-value=2.2e-05 Score=67.68 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=39.1
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~ 119 (452)
|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.-+.
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 34444433 679999999999999999999999999999999985433
No 57
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.93 E-value=1.4e-05 Score=91.57 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.-|++++|+|+.|+.|..||+-+|||.|||.|.+-++.+|+| +...++|+.+..|++|+.+..++
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 469999999999999999999999999999999999999999 67899999999999999997543
No 58
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.86 E-value=5.5e-05 Score=79.47 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=57.1
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------ceeeE
Q 012955 73 GKIVSWI-KSEGDVLSKGESVVVVESD------------------------------------------------KADMD 103 (452)
Q Consensus 73 g~I~~w~-v~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~e 103 (452)
|.|.+++ +++||.|++||+|+++++. ...+.
T Consensus 132 G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~~ 211 (409)
T PRK09783 132 GFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRFT 211 (409)
T ss_pred EEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcEE
Confidence 9999998 9999999999999999831 01457
Q ss_pred EEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 104 VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
|+||++|+|.+..+++|+.|..|++|+.|.+.+
T Consensus 212 I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 212 LKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 999999999999999999999999999997654
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.81 E-value=4.7e-05 Score=65.99 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=37.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.|+.+.. ++|+.|++||.|++||++|+..+|.||.+|+|.++.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 34444443 669999999999999999999999999999999884
No 60
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.80 E-value=7.3e-05 Score=75.80 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=32.2
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 47999999999999999999999999999997654
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.76 E-value=5.1e-05 Score=68.47 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKS-EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~-~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G 120 (452)
...|-|-++... .-|.|+.+.+. +|++|++||.++.||++|+..+|.||.+|+|.++..+..
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 345544444322 23678888876 899999999999999999999999999999999875543
No 62
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.75 E-value=6.5e-05 Score=76.07 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=56.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------- 99 (452)
|+|.+++|++||.|++||+|++++...
T Consensus 56 G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a~ 135 (310)
T PRK10559 56 GLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTVL 135 (310)
T ss_pred eEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998721
Q ss_pred -----------------eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 100 -----------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 100 -----------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
-...|+||++|+|.++.+++|+.|..|++|+.|.+.
T Consensus 136 a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 136 HQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024699999999999999999999999999988654
No 63
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.75 E-value=7.8e-05 Score=74.62 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=57.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 100 (452)
.|+|.++++++||.|++||+|+.++..-.
T Consensus 34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~ 113 (322)
T TIGR01730 34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA 113 (322)
T ss_pred cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 49999999999999999999999975311
Q ss_pred --------------------eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 --------------------DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 --------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
...|+||.+|+|..+.+.+|+.+..|++|+.|.+.+
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 346999999999999999999999999999997543
No 64
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.69 E-value=9.7e-05 Score=75.66 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=32.4
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
...|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 346999999999999999999999999999997654
No 65
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.65 E-value=0.00017 Score=63.80 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=50.0
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEE---EeCCCCccC---CCC-eEEEEecch
Q 012955 73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---VVPEGESAP---VGA-AIGILAETE 136 (452)
Q Consensus 73 g~I~~w~-v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i---~v~~G~~v~---~G~-~l~~i~~~~ 136 (452)
|.|+.+. .++|++|++||+++.||++|...+|.||.+|+|.++ +....+.+. .|+ -|+.|...+
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 3444433 267999999999999999999999999999999999 444445554 665 888887543
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.52 E-value=0.00021 Score=74.62 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=32.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 47999999999999999999999999999987644
No 67
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.48 E-value=6.4e-05 Score=77.24 Aligned_cols=43 Identities=37% Similarity=0.518 Sum_probs=39.6
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
.++++||.+|++|+++|||+..|.|+|++|||+++||++|...
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 3567899999999999999999999999999999999999764
No 68
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.47 E-value=0.00021 Score=72.65 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=31.9
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 35799999999999999999999999999999654
No 69
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.47 E-value=0.00037 Score=72.49 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=54.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 100 (452)
.|+|.++++++||.|++||+|+.++..-.
T Consensus 71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~ 150 (385)
T PRK09578 71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ 150 (385)
T ss_pred cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 39999999999999999999999986310
Q ss_pred --------------------eeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecc
Q 012955 101 --------------------DMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET 135 (452)
Q Consensus 101 --------------------~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~ 135 (452)
...|+||++|+|.+.++++|+.|..| ++|+.|.+.
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 24799999999999999999999885 588888653
No 70
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.46 E-value=0.00041 Score=72.54 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=54.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCce----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------- 100 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------- 100 (452)
|+|.++++++||.|++||+|++|+....
T Consensus 74 G~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a 153 (397)
T PRK15030 74 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA 153 (397)
T ss_pred EEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999975210
Q ss_pred -------------------eeEEEcCCCeEEEEEEeCCCCccCCCCe--EEEEecc
Q 012955 101 -------------------DMDVETFYDGILAAIVVPEGESAPVGAA--IGILAET 135 (452)
Q Consensus 101 -------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~--l~~i~~~ 135 (452)
...|+||++|+|.+.++++|+.|..|++ |+.|.+.
T Consensus 154 ~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 154 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence 2469999999999999999999999985 6666543
No 71
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.37 E-value=0.00065 Score=70.69 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=54.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------- 99 (452)
|+|.++++++||.|++||+|++++...
T Consensus 70 G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a 149 (385)
T PRK09859 70 GIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEA 149 (385)
T ss_pred EEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999998531
Q ss_pred ------------------eeeEEEcCCCeEEEEEEeCCCCccCCCC--eEEEEecc
Q 012955 100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAET 135 (452)
Q Consensus 100 ------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~--~l~~i~~~ 135 (452)
....|+||++|+|.+.++++|+.|..|+ +|+.|.+.
T Consensus 150 ~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 150 EANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 0257999999999999999999999985 68877543
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.30 E-value=0.00076 Score=49.73 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=33.1
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~ 138 (452)
+..|.+|.+|+|.++++++|+.|+.|++|+.+...+.+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 36789999999999999999999999999999765543
No 73
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.28 E-value=0.00041 Score=61.31 Aligned_cols=47 Identities=32% Similarity=0.251 Sum_probs=39.3
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955 73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119 (452)
Q Consensus 73 g~I~~w~-v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~ 119 (452)
|.|..+. .++|++|++||.++.||++|+..+|.||.+|+|.++.-..
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 83 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL 83 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence 4454443 3679999999999999999999999999999999886443
No 74
>PRK12784 hypothetical protein; Provisional
Probab=97.21 E-value=0.0017 Score=51.74 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=58.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCce-eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKA-DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~-~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
-.|+|.++++.+++.|-+.+.|+-|+++.- -..|.--.+|.|..+.+++||.+..+++|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 369999999999999999999999999754 44588899999999999999999999999999763
No 75
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.20 E-value=0.0011 Score=69.86 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=53.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK---------------------------------------------------- 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK---------------------------------------------------- 99 (452)
.|+|.++++++||.|++||+|+++....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 3999999999999999999999996521
Q ss_pred -------------------eeeEEEcCCCeEEEEEEeCCCCccCCCC--eEEEEec
Q 012955 100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAE 134 (452)
Q Consensus 100 -------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~--~l~~i~~ 134 (452)
-...|+||++|+|..+.++.|+.|..|+ +|+.|.+
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 0237999999999999999999999984 6777654
No 76
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.15 E-value=0.0016 Score=67.42 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=53.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------- 99 (452)
|.|.+|++++||.|++||+|++++...
T Consensus 70 G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~ 149 (370)
T PRK11578 70 GQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTA 149 (370)
T ss_pred eEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999998631
Q ss_pred --------------------------------eeeEEEcCCCeEEEEEEeCCCCccCCC---CeEEEEecc
Q 012955 100 --------------------------------ADMDVETFYDGILAAIVVPEGESAPVG---AAIGILAET 135 (452)
Q Consensus 100 --------------------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G---~~l~~i~~~ 135 (452)
....|+||++|+|..+.++.|+.|..| ++|+.|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 150 ATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 220 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence 023799999999999999999999765 478887554
No 77
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.15 E-value=0.00046 Score=50.90 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=25.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.|+|.+|+|++||.|++||+|+++++..
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 3999999999999999999999998754
No 78
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.98 E-value=0.00099 Score=66.82 Aligned_cols=64 Identities=23% Similarity=0.464 Sum_probs=47.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 100 (452)
.|+| +|+|++||+|++||+|++++++..
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 107 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS 107 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence 3999 999999999999999999987221
Q ss_pred ----------------ee----------EEEcCCCeEEE-------------------------EEEeCCCCccCCCCeE
Q 012955 101 ----------------DM----------DVETFYDGILA-------------------------AIVVPEGESAPVGAAI 129 (452)
Q Consensus 101 ----------------~~----------ev~ap~~G~l~-------------------------~i~v~~G~~v~~G~~l 129 (452)
.+ .|.||++|+|. ++.+.+|+.+..|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l 187 (328)
T PF12700_consen 108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPL 187 (328)
T ss_dssp TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCS
T ss_pred HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCcee
Confidence 11 39999999999 9999999999999999
Q ss_pred EEEecch
Q 012955 130 GILAETE 136 (452)
Q Consensus 130 ~~i~~~~ 136 (452)
+.|.+..
T Consensus 188 ~~i~~~~ 194 (328)
T PF12700_consen 188 FTIADLS 194 (328)
T ss_dssp EEEEEES
T ss_pred eeeccCC
Confidence 9997653
No 79
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.91 E-value=0.0021 Score=65.06 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+||++|+|..+.+.+|+.|.. ++|+.|.+.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 68999999999999999999986 7888886543
No 80
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.88 E-value=0.0025 Score=55.95 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=33.6
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.|+.+.. ++|++|++||+++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 44444433 569999999999999999999999999999998875
No 81
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=96.84 E-value=0.008 Score=56.68 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=87.1
Q ss_pred hcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCC-Ce
Q 012955 276 ESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAING-GL 354 (452)
Q Consensus 276 ~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~-GL 354 (452)
++...||+.+...+|++.+... +|+.+++++.+++.|+.+++.+|++|+=++.+ +...+++.++..+.|..++ ++
T Consensus 24 R~~~~p~y~i~~~LDvtn~~~~---vk~~~l~Ff~a~l~avtr~~n~~~EFRlr~~~-~~~~~~d~v~p~~tv~~~~~e~ 99 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNFYGY---VKENGLSFFPALLYAVTRCANRHQEFRLRIQN-GQLGYWDNVPPMYTVFHGETET 99 (219)
T ss_pred hhcccceEeeeeeeehhHHHHH---HHHcCCcchHHHHHHHHHHhcccHHhHhhhcC-CeeEEeecCCcceEEEcCCCcE
Confidence 5578999999999999876544 45559999999999999999999999999875 4788999999999999954 56
Q ss_pred EeeeecCCCCCCHHHHHHHHHHHHHHHHcCC
Q 012955 355 ITPVLQDADKLDLYLLSQKWKELVEKARSKQ 385 (452)
Q Consensus 355 ~vPVI~~a~~~sl~eia~~i~~l~~kar~g~ 385 (452)
+.-+.-+ -+.+..++.+....-+++.+.+.
T Consensus 100 Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~ 129 (219)
T COG4845 100 FSVLWTE-YQEDYEDFAQLYIEDIEQYGANN 129 (219)
T ss_pred EEEEecc-ccccHHHHHHHHHHHHHHhccCc
Confidence 6644444 67788999988888888887765
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.74 E-value=0.0051 Score=60.28 Aligned_cols=68 Identities=26% Similarity=0.393 Sum_probs=55.2
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.-+-|.-| ..|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|. =++.+|-.|+.|.-|+.|..-.
T Consensus 163 ~Er~IrAp------~~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 163 HERVLRAP------ADGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred ceEEEECC------CCeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECCCC
Confidence 34555555 22544 459999999999999999974 799999999995 5789999999999999997544
No 83
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0048 Score=54.48 Aligned_cols=44 Identities=36% Similarity=0.393 Sum_probs=37.6
Q ss_pred EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSW-IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w-~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.|+-+ +.++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 444444 23789999999999999999999999999999998775
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.22 E-value=0.0075 Score=47.52 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.2
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+||+.|+|.++++++||.|..|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5999999999999999999999999999997544
No 85
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.19 E-value=0.02 Score=59.53 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=29.9
Q ss_pred eEEEcCCCeEEEEEEe-CCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVV-PEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~~ 135 (452)
..|+||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus 272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred cEEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 3599999999999876 799999999999999753
No 86
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.13 E-value=0.012 Score=57.33 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.5
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|+||++|+|..+.+.+|+.+..|++|+.|.+..
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 35899999999999999999999999999987643
No 87
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.11 E-value=0.014 Score=60.16 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.2
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
...|+||.+|+|.+..+..|+.|..|.+|+.+.+.+
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 345899999999999999999999999999987644
No 88
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.04 E-value=0.01 Score=50.44 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=44.3
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
...+.+| |. ..-|.-.+-.|++||+|++||.|++.+ +-+...|.|+.+|+|..|.
T Consensus 27 p~~v~ip-L~--qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 27 PKKVVIP-LR--QHIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred cCEEEEE-Cc--ccCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 3455666 33 234677889999999999999999997 4668899999999999875
No 89
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.85 E-value=0.028 Score=56.69 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=48.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES---DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet---dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
+=+.+.+++.||.|++||+|++|=. +....+|.||++|+|. .....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence 4477888999999999999999964 4567889999999994 45666788999998876
No 90
>PRK06748 hypothetical protein; Validated
Probab=95.69 E-value=0.017 Score=47.23 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
-|.||..|.|.++++++||.|..|++|++++.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 38999999999999999999999999999987
No 91
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.55 E-value=0.051 Score=54.48 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
=+.++.++.||.|++||+|++|.. .....+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 228 G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 228 GLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 356689999999999999999964 1234789999999994 45666678889988876
No 92
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.53 E-value=0.041 Score=57.02 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=48.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
.|=+.+++++.||.|++||.|++|-. +....+|.||++|+| +.....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence 35578899999999999999999964 234555799999999 456777889999999876
No 93
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.52 E-value=0.054 Score=55.10 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=47.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
+=+.+..++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 4578899999999999999999865 34567899999999953 44445688999998874
No 94
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.31 E-value=0.057 Score=55.21 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
+=+.+..++.||.|++||+|++|-. .....+|.||.+|+|.. ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 4466789999999999999999964 23567899999999954 5666788999999876
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.10 E-value=0.033 Score=42.23 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=29.3
Q ss_pred EEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 104 VETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
|.||++|+|.++++++|+.|..|++|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 6899999999999999999999999999964
No 96
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.89 E-value=0.051 Score=42.47 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|.||..|+|.++++++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5889999999999999999999999999996533
No 97
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.88 E-value=0.037 Score=49.73 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.9
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
...|.||..|++.++++++||.|..||.||.|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 4679999999999999999999999999999975
No 98
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.46 E-value=0.094 Score=52.58 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAI 129 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l 129 (452)
+=+.+.+++.||.|++||+|++|-. .....+|.||++|+|.-+ ...-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~--~~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYN--TATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe--eCCCccCCCCcc
Confidence 4578889999999999999999943 345678999999999544 333455666554
No 99
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.37 E-value=0.055 Score=45.29 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=27.2
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+|+||++|+|..+.+++|+.+..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 378888888888888888888888888888764
No 100
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.25 E-value=0.11 Score=52.99 Aligned_cols=61 Identities=15% Similarity=0.326 Sum_probs=47.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC---ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESD---KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetd---K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
++=+++.+|+.||+|++||.|+.|-.. +...||+|+.+|+|..+.. --.+..|+.++.+..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence 355899999999999999999988754 7899999999999976532 234556677766643
No 101
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.03 E-value=0.075 Score=48.24 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=35.1
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV 116 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i~ 116 (452)
-+|..+-..+.+||.|.+||.|+-+.|-|-++- ++||++|+|.-+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 367888899999999999999999999997765 9999999997654
No 102
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=93.97 E-value=1.1 Score=47.64 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=35.2
Q ss_pred EEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 012955 284 RVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQ 322 (452)
Q Consensus 284 ~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~ 322 (452)
+....++-+.+.++++.-|+.++|+|.+|.-+++.||.+
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~ 289 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSK 289 (480)
T ss_pred EEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456689999999999999999999999999999999997
No 103
>PRK07051 hypothetical protein; Validated
Probab=93.91 E-value=0.17 Score=40.76 Aligned_cols=26 Identities=19% Similarity=0.606 Sum_probs=24.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 45999999999999999999999985
No 104
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.66 E-value=0.11 Score=46.07 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=32.4
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 56799999999999999999999999999999753
No 105
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.61 E-value=0.11 Score=51.30 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=36.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v 117 (452)
|..-+.+|+|||+|++||+|++-. .--.+-+.||.+|+|.+|.-
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEec
Confidence 666789999999999999999743 22466789999999998865
No 106
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.44 E-value=0.073 Score=52.72 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=25.9
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~ 138 (452)
..|.++.+|+|.+|+|++|+.|+.|++|+.|++....
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~ 38 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTDYE 38 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HHHH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeeccc
Confidence 5789999999999999999999999999999865543
No 107
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.19 E-value=0.17 Score=51.15 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.0
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.+.|.++.+|+|.++++++|+.|..|++|+.|+..+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~ 78 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTNA 78 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchHH
Confidence 6789999999999999999999999999999976543
No 108
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.05 E-value=0.22 Score=50.97 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=36.3
Q ss_pred EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|+.+ .+.|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~ 83 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRP 83 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence 444544 688999999999999999999999999999997654
No 109
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.02 E-value=0.12 Score=41.05 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.0
Q ss_pred EEEcCCCeEEEE------EEeCCCCccCCCCeEEEEecch
Q 012955 103 DVETFYDGILAA------IVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 103 ev~ap~~G~l~~------i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+|++|.-|.+.+ +++++|+.|..|++|+.|+...
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence 678888887655 9999999999999999997643
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.45 E-value=0.37 Score=50.87 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=45.0
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|+.|++|+.|.+.+.
T Consensus 66 ~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~ 123 (415)
T PRK11556 66 TATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPF 123 (415)
T ss_pred EEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHH
Confidence 3444444333445677776 357889999999999999999999999999999976543
No 111
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.45 E-value=0.13 Score=50.97 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=21.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~ 100 (452)
.|.|.+++|++||.|++||+|+++..-..
T Consensus 9 ~G~V~~i~V~eG~~VkkGq~L~~LD~~~~ 37 (305)
T PF00529_consen 9 GGIVTEILVKEGQRVKKGQVLARLDPTDY 37 (305)
T ss_dssp -EEEEEE-S-TTEEE-TTSECEEE--HHH
T ss_pred CeEEEEEEccCcCEEeCCCEEEEEEeecc
Confidence 39999999999999999999999985443
No 112
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.43 E-value=0.2 Score=45.75 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=31.8
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||..|+|.++++++||.|..|+.|+.++..
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence 35699999999999999999999999999999643
No 113
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.28 E-value=0.44 Score=49.60 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=44.6
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.++.|+....-+....|+..+ ..+|.++.+|+|.++++++|+.|+.|++|+.|++.+
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~ 96 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence 334444444445566777554 678999999999999999999999999999997654
No 114
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.05 E-value=0.23 Score=50.31 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=36.4
Q ss_pred EEEeCceeeEEEcCCC---eEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 94 VVESDKADMDVETFYD---GILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 94 ~vetdK~~~ev~ap~~---G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+...-...|.++.+ |+|.+++|++|+.|..|++|+.|++..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 4454444667899999 999999999999999999999997654
No 115
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.81 E-value=0.17 Score=53.94 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=42.8
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
.++.+| +. ...|.--+.+|++||+|++||+|++-.. -....+.||.+|+|..|.
T Consensus 27 ~~v~ip-l~--q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 27 PTVAVD-GR--DFVGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN 80 (447)
T ss_pred cEEEEe-ch--hcCCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence 455555 22 2347777899999999999999998763 368899999999999994
No 116
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.40 E-value=0.56 Score=55.63 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=50.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
|+..++.++.++.+..++.....+. .-...|.||..|.|.++++++||.|..|++|++++..
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred CeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 5777888888888877766554432 2235699999999999999999999999999999763
No 117
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.17 E-value=0.39 Score=47.87 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.9
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
...|.+|.+|+|.++++++|+.|..|++|+.+...+
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence 568999999999999999999999999999997544
No 118
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=91.16 E-value=0.35 Score=54.37 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
..+++| |.. .-|.--+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 35 ~~~~ip-l~q--hiG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 35 QRLVIP-LKQ--HIGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CEEEEE-Ccc--CCCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 456666 433 23666778999999999999999764 3367999999999998763
No 119
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.09 E-value=0.46 Score=49.12 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=43.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 75 IVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+.-+.++.|+....=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 333444555433322344455544 355899999999999999999999999999999654
No 120
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.98 E-value=0.47 Score=50.67 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=34.7
Q ss_pred CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 98 DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 98 dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
+.-...|.++..|+|.+++|++||.|..|++|+.+.+...
T Consensus 56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3335678999999999999999999999999999976543
No 121
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=90.81 E-value=0.26 Score=49.27 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=28.9
Q ss_pred EEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 92 VVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 92 l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
-+.|+. -+..|.++.+|+| ++++++|+.|..|++|+.+...+
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 345554 4567999999999 99999999999999999997654
No 122
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=90.76 E-value=0.46 Score=48.13 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=33.1
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
+.|.++.+|+|.++++++||.|+.|++|+.|+..+-
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~ 83 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY 83 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence 669999999999999999999999999999987553
No 123
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=90.72 E-value=0.46 Score=49.70 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=34.3
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.+.|.++.+|+|.++++++|+.|+.|++|+.|++.+-
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~ 97 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDA 97 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHHH
Confidence 7889999999999999999999999999999986553
No 124
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.39 E-value=0.92 Score=47.16 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 81 ~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|+.-..-...+.|+.+ -..+|.++.+|+|.++++++|+.|+.|++|+.|++.+
T Consensus 44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~ 98 (385)
T PRK09578 44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAP 98 (385)
T ss_pred EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHH
Confidence 334333333445666654 4679999999999999999999999999999996654
No 125
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.96 E-value=0.47 Score=50.68 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.8
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
.++.+| +. ..-|.--+.+|++||+|++||.|++-... ....+.||.+|+|..|.
T Consensus 28 ~~~~ip-l~--qh~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 28 KTVALL-GE--DYVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CEEEEe-ch--hcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 455555 22 23366778999999999999999966533 57899999999999994
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.70 E-value=0.59 Score=48.55 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=38.2
Q ss_pred EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|........|.++.+|+|.+++|++||.|..|++|+.++...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 35566777777999999999999999999999999999997654
No 127
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.65 E-value=0.64 Score=49.00 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=33.8
Q ss_pred eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 100 ~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
-...|.++.+|+|.++++++|+.|+.|++|+.|++...
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 34589999999999999999999999999999976543
No 128
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.55 E-value=0.6 Score=47.42 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=33.2
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+.|.++..|+|.++++++||.|+.|++|+.|+..+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 668999999999999999999999999999997653
No 129
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.52 E-value=0.32 Score=38.99 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.3
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
++.+.=+.++++.||.|++||+||+|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 344555789999999999999999886653
No 130
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.44 E-value=0.93 Score=45.59 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeC--ceeeEEEcCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESD--KADMDVETFYDGILAAI 115 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetd--K~~~ev~ap~~G~l~~i 115 (452)
+=|.+..++.||.|++||.|++|-.- ....++.||.+|+|..+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44667778888888888888888531 23456788888888554
No 131
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=88.67 E-value=0.48 Score=50.41 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=37.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.--+..|++||+|++||.|++.+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 555678999999999999999984 4578999999999998773
No 132
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=88.58 E-value=0.83 Score=47.79 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=37.2
Q ss_pred EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
..|+. .-..+|.+..+|+|.++++++||.|..|++|+.|+..+-
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~ 101 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATY 101 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHH
Confidence 45553 347889999999999999999999999999999976543
No 133
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=88.42 E-value=0.53 Score=48.21 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=34.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955 76 VSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~ 119 (452)
-..+|++||.|++||+|+|-. ----+-+.||.+|+|..|+-.+
T Consensus 41 p~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 41 PSMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred CcceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccc
Confidence 346899999999999999843 1146779999999999886543
No 134
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=87.99 E-value=0.49 Score=43.27 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=23.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
..|+|.+|+++.||.|+.||+|++|+
T Consensus 131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 131 VAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 36899999999999999999999985
No 135
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=87.56 E-value=0.6 Score=42.68 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=24.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.+|+|++|+++.||.|..||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 46999999999999999999999985
No 136
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=87.40 E-value=1.5 Score=43.57 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=48.4
Q ss_pred EEEEEEEcCCCCeecCCCeE--EEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESV--VVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l--~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
+=+.++.++.||.|++||+| ..+-. +-...++++|.+|+| +.....-.|..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 45779999999999999999 55442 233568999999999 6778888999999999875
No 137
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=86.89 E-value=1 Score=47.46 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=25.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.|.|.+++|++||.|++||+|+.++...
T Consensus 66 ~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 66 SGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred CeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 3999999999999999999999998653
No 138
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.30 E-value=1.1 Score=47.79 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
|.|.+++|++||.|++||+|+.+....
T Consensus 68 G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 68 NAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred cEEEEEEcCCCCEecCCCEEEEECchH
Confidence 999999999999999999999997543
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=86.25 E-value=1.2 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=24.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.+|+|.+|++++||.|..||.|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 36999999999999999999999985
No 140
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=86.09 E-value=1.7 Score=45.84 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=37.6
Q ss_pred eEEEEEeCc-eeeEEEcCCCeEEEEEE-eCCCCccCCCCeEEEEecch
Q 012955 91 SVVVVESDK-ADMDVETFYDGILAAIV-VPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 91 ~l~~vetdK-~~~ev~ap~~G~l~~i~-v~~G~~v~~G~~l~~i~~~~ 136 (452)
..+.|+-|. -...|.++.+|+|.+++ +.+||.|..|++|+.|+..+
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence 345566443 35679999999999998 99999999999999997544
No 141
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.41 E-value=1.8 Score=38.48 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=40.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEE
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAI 115 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i 115 (452)
.||-++-..+..|+.|.+||+++-|.|-|-++- +++|.+|++.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 568999999999999999999999999998776 899999999654
No 142
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=85.18 E-value=0.79 Score=37.64 Aligned_cols=23 Identities=26% Similarity=0.697 Sum_probs=18.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 012955 75 IVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
=++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 46799999999999999999984
No 143
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=84.16 E-value=2.2 Score=39.65 Aligned_cols=66 Identities=29% Similarity=0.410 Sum_probs=49.6
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE-------------------
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI------------------- 115 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i------------------- 115 (452)
..|.-| +. |+++.+. ++-|.|=. ||-++..=++ ..|.||++|+|..+
T Consensus 21 ~~i~aP-~~-----G~vi~L~-~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI 90 (169)
T PRK09439 21 IEIIAP-LS-----GEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 90 (169)
T ss_pred eEEEec-CC-----eEEEEhH-HCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 346666 33 7777765 55665554 8888877654 57889999988776
Q ss_pred ----------------EeCCCCccCCCCeEEEEec
Q 012955 116 ----------------VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ----------------~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|..|++|+.+.-
T Consensus 91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 6899999999999999953
No 144
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=84.06 E-value=1.7 Score=46.61 Aligned_cols=28 Identities=25% Similarity=0.556 Sum_probs=25.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
..|+|.+|++++||.|..||+|++|+.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 4699999999999999999999999854
No 145
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=83.97 E-value=0.93 Score=48.71 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=42.6
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
.++++| |.. +-|.=...+|++||+|.+||.|.+=+. ....+.||.+|+|.+|.
T Consensus 31 ~~~~iP-l~q--h~g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 31 QRALIP-LKQ--HIGAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEe-eec--ccCCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 455666 332 234446789999999999999998875 88999999999999986
No 146
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=83.95 E-value=1.3 Score=48.88 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
-+|.||..|.|.++++++||.|..|++|+.++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999997643
No 147
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=83.68 E-value=0.81 Score=41.83 Aligned_cols=55 Identities=25% Similarity=0.198 Sum_probs=42.5
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~ 119 (452)
+..-+.||+ ...++. =++|-.|.+||.++.||+=|+.-+|-+|.+|.|.+|.-+-
T Consensus 73 ~~A~~~LGd----vv~veL-Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 73 DFAQEHLGD----VVYVEL-PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred hhhhhhcCc----eEEEEc-CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 333444553 433433 3789999999999999999999999999999999986443
No 148
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=83.68 E-value=2.7 Score=37.05 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=17.0
Q ss_pred EeCCCCccCCCCeEEEEec
Q 012955 116 VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|..|++|+.+..
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 6899999999999999953
No 149
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.40 E-value=4.3 Score=40.28 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=37.3
Q ss_pred CCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 88 KGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 88 ~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.-.....++. .-..++.++..|.|.++++++||.|..|++|+.+++.
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3344445554 3344788889999999999999999999999999873
No 150
>PF13437 HlyD_3: HlyD family secretion protein
Probab=83.09 E-value=2.3 Score=35.35 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
..|.|..|.+++|+.|..|+.|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 3599999999999999999999999853
No 151
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=82.86 E-value=2.3 Score=37.87 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=40.0
Q ss_pred EEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEEcCCCeEEEEE---------------------------------
Q 012955 73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI--------------------------------- 115 (452)
Q Consensus 73 g~I~~w~v~~Gd~V----~~gd~l~~vetdK~~~ev~ap~~G~l~~i--------------------------------- 115 (452)
|+++.+. +.-|.+ --||.++..=++. .|-||++|+|..+
T Consensus 11 G~vi~l~-~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF 86 (132)
T PF00358_consen 11 GKVIPLE-EVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGF 86 (132)
T ss_dssp EEEEEGG-GSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTE
T ss_pred cEEEEhh-hCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcce
Confidence 6666443 455554 2367777665553 6788999988877
Q ss_pred --EeCCCCccCCCCeEEEEec
Q 012955 116 --VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 --~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|..|++|+.+..
T Consensus 87 ~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 87 ETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EESS-TTSEE-TTEEEEEE-H
T ss_pred EEEEeCCCEEECCCEEEEEcH
Confidence 6789999999999999953
No 152
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.68 E-value=2.4 Score=42.77 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=30.1
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
..+|..| ..|+|.++++++||.|..|++|+.|+.+.
T Consensus 45 ~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3455555 45999999999999999999999998654
No 153
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.17 E-value=3.2 Score=36.43 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.6
Q ss_pred EEeCCCCccCCCCeEEEEec
Q 012955 115 IVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 115 i~v~~G~~v~~G~~l~~i~~ 134 (452)
.++++||.|..|++|+.+..
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 47899999999999999953
No 154
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=81.23 E-value=3 Score=46.22 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=32.0
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||..|.|.++++++||.|..|++|+.++..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 44799999999999999999999999999999653
No 155
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.14 E-value=2 Score=47.52 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=32.2
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..|.||..|.|.++++++||.|..|++|+.++...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999997643
No 156
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=81.07 E-value=3 Score=39.31 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=41.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG 130 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~ 130 (452)
++|+.| +++|+.+++||.+..++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 445444 5899999999999999966 5566666665 267899999999999653
No 157
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=80.85 E-value=3.8 Score=31.77 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=27.2
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEE
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVV 95 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~v 95 (452)
...+|.-| .+|+|++|+++.|+.|..|+.|+.|
T Consensus 41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 44556666 3599999999999999999999875
No 158
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=79.96 E-value=3.4 Score=39.49 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=42.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCC-eEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGA-AIGI 131 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~-~l~~ 131 (452)
+.|+. ++++|+.+++||.+..++-. .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 45555 46899999999999999976 5666666665 278899999999998 4544
No 159
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=79.32 E-value=1.6 Score=38.39 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
+|+--++++++||+|++||+|+++-.+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 478899999999999999999998644
No 160
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=79.30 E-value=1.7 Score=43.14 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 349999999999999999999999986
No 161
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=79.12 E-value=3.8 Score=42.41 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=34.4
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhhH
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEV 139 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~~ 139 (452)
.+.|-+..+|+|.++.++.++.|+.|++|+.|++.+-..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~~ 91 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYRA 91 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHHH
Confidence 456889999999999999999999999999998766544
No 162
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=78.81 E-value=3.7 Score=37.56 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=16.8
Q ss_pred EeCCCCccCCCCeEEEEe
Q 012955 116 VVPEGESAPVGAAIGILA 133 (452)
Q Consensus 116 ~v~~G~~v~~G~~l~~i~ 133 (452)
++++||.|+.|++|+++.
T Consensus 92 ~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 92 LVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EeeCCCEEccCCEEEEEC
Confidence 789999999999999984
No 163
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=78.35 E-value=1.8 Score=38.06 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
+|+--++++++||+|++||+|+++..+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4777899999999999999999997543
No 164
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.41 E-value=3.1 Score=46.13 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=32.2
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||..|+|.++.+++|+.|..|++|+.++..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 46799999999999999999999999999999653
No 165
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=77.40 E-value=2.7 Score=45.74 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.7
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+.||..|.|..+.|++|+.|..|++|++++.-
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM 609 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM 609 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence 389999999999999999999999999999753
No 166
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=76.90 E-value=4.3 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
..|+|.++++++||.|..|++|++|+..
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 5699999999999999999999999854
No 167
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=76.75 E-value=3 Score=30.88 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=22.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVV 95 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~v 95 (452)
.|++.++++++|+.+..|++|++|
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 488999999999999999999875
No 168
>PRK09294 acyltransferase PapA5; Provisional
Probab=76.18 E-value=39 Score=35.18 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=62.2
Q ss_pred EEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEec-------------C
Q 012955 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI-------------N 351 (452)
Q Consensus 285 ~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~-------------~ 351 (452)
....++-+...++++.-++.++|++.+|.-|.+.++.+.-... ...+.+++.|+. .
T Consensus 209 ~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~~~~~-----------~~~i~~~~pv~~R~~l~p~~~~~~~~ 277 (416)
T PRK09294 209 TRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQLRRTP-----------HVPLPYVYPVDLRFRLTPPVAATEGT 277 (416)
T ss_pred eEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCC-----------CCceeeecchhhHhhcCCCCCcccce
Confidence 3456776666666666666689999999999998887642110 001111222221 1
Q ss_pred C--CeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCC-C--cCc----cC------CCcEEEecCCCCCC
Q 012955 352 G--GLITPVLQDADKLDLYLLSQKWKELVEKARSKQL-Q--PHE----YN------SGTFTLSNLGMFGV 406 (452)
Q Consensus 352 ~--GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l-~--~~d----~~------ggTftISNlG~~Gv 406 (452)
+ |+++--+.-....++.|+++++++.......... . ..+ +. ..++++||+|.++.
T Consensus 278 n~~g~~~~~~~~~~~~sf~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 278 NLLGAATYLAEIGPDTDIVDLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred eeEeeeeeeccccCCCCHHHHHHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 1 1211112222456999999999876664433321 1 001 11 13799999999853
No 169
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=75.70 E-value=5 Score=36.75 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=38.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee--------eEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKAD--------MDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~--------~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
+|+--+-++++||+|++||.|+++.-++.. .-|-+-.+-+-.-+....+-.+..|+.+..+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 588899999999999999999999765431 1122222222111223333467777777654
No 170
>PRK12784 hypothetical protein; Provisional
Probab=75.00 E-value=3.2 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=33.9
Q ss_pred Cceee-EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 98 DKADM-DVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 98 dK~~~-ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
||..+ +|-||+-|+|.++++.+++.|..=.+|+.|...+.
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 34444 48999999999999999999999999999986553
No 171
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=73.53 E-value=4 Score=43.14 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
..|+|.++++++||.|..|++|++|+.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 56999999999999999999999998654
No 172
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=73.16 E-value=4.3 Score=42.84 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=26.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
.+|+|.+|++++||.|..|++|++|+.+
T Consensus 50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5699999999999999999999999854
No 173
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=72.88 E-value=4.1 Score=45.32 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=39.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee--------eEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKAD--------MDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~--------~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
+|+--+++|++||+|++||+|+++.-++.. .-|-.-.+ ....+....+..+..|+.+..+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~-~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTK-DFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccc-cccceeeccCCcccCCCeeEEe
Confidence 678889999999999999999999765431 11111111 1223344455667888876654
No 174
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=72.78 E-value=4.2 Score=48.72 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.2
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|.||..|.|.++++++||.|+.|++|+.++..
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 4599999999999999999999999999999653
No 175
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=72.77 E-value=3.6 Score=43.38 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
-..|.|.+|++++||.|..|++|++|+.+.
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDK 43 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDK 43 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCc
Confidence 357999999999999999999999997643
No 176
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=72.59 E-value=5.4 Score=37.80 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=44.1
Q ss_pred ceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEE
Q 012955 71 TEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (452)
Q Consensus 71 ~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~ 131 (452)
.-|+|+-+.. ++|+.|++||.+..++= -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 3466666665 69999999999999986 44455444444333 789999999999999873
No 177
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=72.46 E-value=2.5 Score=37.65 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCC--ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 59 REIFMPALSSTM--TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 59 ~~i~~P~l~~~~--~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.+|.+- +|-+- -+|+--+|++++||+|++||+|+++..++
T Consensus 68 ~eiLiH-iGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 68 VEILIH-IGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp EEEEEE--SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CEEEEE-EccchhhcCCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 455554 44331 25788999999999999999999997544
No 178
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=72.04 E-value=3 Score=38.69 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 5888999999999999999999997643
No 179
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=71.59 E-value=4.5 Score=41.66 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=25.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
.|+|.+++|++||+|+.|+.|+.|+..
T Consensus 123 sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 123 SGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeeEEecCCCCcccCCceeEEecCC
Confidence 499999999999999999999999876
No 180
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=70.81 E-value=5.3 Score=42.31 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
..|+|.+|++++||.|..|++|++|+.++
T Consensus 48 ~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 48 YKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 56999999999999999999999998654
No 181
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=69.43 E-value=11 Score=40.75 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=37.1
Q ss_pred EEEEeCceeeEEEcCCCeEEEEE------------------------EeCCCCccCCCCeEEEEecch
Q 012955 93 VVVESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 93 ~~vetdK~~~ev~ap~~G~l~~i------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..+...+-..+|.|+.+|+|..| +++.||.|..|++|+.|..+.
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 34455678999999999999988 678999999999999998443
No 182
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=68.73 E-value=11 Score=37.57 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=41.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
..|+.|.. +|+.|++||.+..++-. .++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 34555654 49999999999999975 5555544443 44 5679999999999999754
No 183
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=67.73 E-value=6.2 Score=44.01 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=38.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce--------eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------DMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
+|+--+++|++||+|++||+|+++.-++. +.-|-...+.. ..+....+..+..|+.+..+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~-~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDY-TDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccc-cceeeccCCcccCCCeEEEe
Confidence 57778999999999999999999976532 22222222221 12233445568888877654
No 184
>PRK12999 pyruvate carboxylase; Reviewed
Probab=66.65 E-value=6.8 Score=46.80 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=32.0
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||..|+|.++++++||.|+.|++|+.++..
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 35699999999999999999999999999999753
No 185
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=65.92 E-value=13 Score=41.52 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=45.9
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------------------- 115 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------------------- 115 (452)
+|+++... ++-|.|=. ||-++..=+| ..|.||++|+|..+
T Consensus 470 ~G~~~~l~-~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPLN-EVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeHh-hCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 47887764 56666654 7777766544 47899999988876
Q ss_pred ---EeCCCCccCCCCeEEEEec
Q 012955 116 ---VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ---~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|+.|++|++++.
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred eEEEecCcCEEcCCCEEEEecH
Confidence 7899999999999999954
No 186
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=65.58 E-value=11 Score=42.06 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=47.2
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------------------- 115 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------------------- 115 (452)
+|+++... ++-|.|=. ||-++..=++ -.|.||++|+|..+
T Consensus 486 ~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~g 561 (627)
T PRK09824 486 TGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKF 561 (627)
T ss_pred ceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCC
Confidence 48888766 66776665 8888876655 48999999998876
Q ss_pred ---EeCCCCccCCCCeEEEEec
Q 012955 116 ---VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ---~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|+.||+|++++.
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEcH
Confidence 7889999999999999954
No 187
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=63.69 E-value=9 Score=40.85 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=26.3
Q ss_pred ceEEEEEEEcCCCCe-ecCCCeEEEEEeCc
Q 012955 71 TEGKIVSWIKSEGDV-LSKGESVVVVESDK 99 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~-V~~gd~l~~vetdK 99 (452)
..|+|.+|++++||. |..|++|++|+.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 469999999999999 99999999998654
No 188
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=62.84 E-value=17 Score=38.76 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=36.6
Q ss_pred EEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecchhhH
Q 012955 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEAEV 139 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~~~~ 139 (452)
+-.-+...+|.|+.+|+|..+ +.+.||.|..|++|+.|..+++..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~~ 404 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANRENV 404 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHHH
Confidence 345677889999999999888 578899999999999998544433
No 189
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=62.30 E-value=18 Score=39.16 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=35.8
Q ss_pred EEeCceeeEEEcCCCeEEEEE------------------------EeCCCCccCCCCeEEEEecch
Q 012955 95 VESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+-.-+...+|.|+.+|+|..| +.+.||.|..|++|+.|..+.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAES 473 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCC
Confidence 445677899999999999988 678899999999999998443
No 190
>PRK04350 thymidine phosphorylase; Provisional
Probab=62.06 E-value=19 Score=38.92 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=36.3
Q ss_pred EEEeCceeeEEEcCCCeEEEEE------------------------EeCCCCccCCCCeEEEEecc
Q 012955 94 VVESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 94 ~vetdK~~~ev~ap~~G~l~~i------------------------~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+..-+...+|.|+.+|+|..| +++.||.|..|++|+.|...
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 3556678999999999999988 67889999999999999843
No 191
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=61.14 E-value=20 Score=38.30 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=33.7
Q ss_pred eCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecc
Q 012955 97 SDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 97 tdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~ 135 (452)
.-+-..+|.|+.+|+|.+| +.+.||.|..|++|+.|...
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 4567889999999999888 67889999999999999843
No 192
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=60.89 E-value=11 Score=37.17 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.4
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
+.-|+||++|++.. .++.||.|..|++|+.+.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45699999999955 8999999999999999965
No 193
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=60.54 E-value=15 Score=47.06 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.9
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~ve 96 (452)
.++|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999863
No 194
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=60.25 E-value=8.9 Score=38.37 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.--..|++++||.|+.||.|++++
T Consensus 63 ~i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 63 SIEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred ceEEEEEcCCCCEeCCCCEEEEEe
Confidence 355679999999999999988887
No 195
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.48 E-value=12 Score=37.66 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.8
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..-|+||.+|.+ ...++.|+.|..|++|++|.+.-
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 567999999999 57899999999999999997643
No 196
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=58.57 E-value=15 Score=41.07 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=48.8
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEEcCCCeEEEEE-------------------
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLS----KGESVVVVESDKADMDVETFYDGILAAI------------------- 115 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~----~gd~l~~vetdK~~~ev~ap~~G~l~~i------------------- 115 (452)
.++.-| + +|+++... ++-|.|= -||-++..=++ -.|.||++|+|..+
T Consensus 499 ~~v~aP-~-----~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLI 568 (648)
T PRK10255 499 AELVSP-I-----TGDVVALD-QVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVV 568 (648)
T ss_pred eEEEec-C-----CcEEEEcc-cCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEE
Confidence 346666 2 37888766 4444333 28888877765 58899999998876
Q ss_pred ----------------EeCCCCccCCCCeEEEEec
Q 012955 116 ----------------VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ----------------~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|+.||+|++++-
T Consensus 569 HiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 569 HMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred EeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 6899999999999999954
No 197
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=58.46 E-value=23 Score=37.88 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=34.4
Q ss_pred eCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecch
Q 012955 97 SDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 97 tdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..+-..+|.|+.+|+|..| +++.||.|..|++|+.|..+.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCC
Confidence 4677899999999999887 678899999999999998433
No 198
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=56.89 E-value=12 Score=37.14 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=39.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|.|+ | ..+|+.|++||.+..++-. .++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4554 3 4579999999999988877 666655554322223457888889999888753
No 199
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.21 E-value=15 Score=36.82 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=30.4
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
...++||.+|.+. ..++.||.|..|++|+.+.+..
T Consensus 219 ~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 219 SVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred CeEEecCCCeEEE-EecCCCCEECCCCEEEEEECCC
Confidence 3579999999985 5899999999999999997643
No 200
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.89 E-value=14 Score=37.37 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.1
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..-|+||.+|.+ ...++.|+.|..|++|++|.+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCC
Confidence 567999999998 5678999999999999999874
No 201
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=55.85 E-value=21 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=35.5
Q ss_pred EEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecch
Q 012955 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+-..+...+|.|+.+|+|..| +.+.||.|..|++|+.|....
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCC
Confidence 445778899999999999887 678899999999999998543
No 202
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=55.65 E-value=14 Score=39.72 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.7
Q ss_pred CceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 012955 70 MTEGKIVSWIKSEGD-VLSKGESVVVVESD 98 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd-~V~~gd~l~~vetd 98 (452)
..+|+|.+|++++|+ .|+.|++|++++.+
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 357999999999995 79999999999854
No 203
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.37 E-value=12 Score=37.45 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++|+.|++||+|++++
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEE
Confidence 3789999999999999999887
No 204
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=55.25 E-value=14 Score=41.44 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~ 100 (452)
+|+--+++|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 57778999999999999999999986543
No 205
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=54.97 E-value=16 Score=36.55 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 100 ~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...-++||..|.+ ..+++.|+.|..|++|+.+.+.
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 4567899999998 5778999999999999999764
No 206
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=54.86 E-value=16 Score=38.02 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=29.7
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.-|+||..|.+ ...++.|+.|..|++|+.|.+..
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 35999999998 57789999999999999997643
No 207
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=54.64 E-value=36 Score=41.40 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=57.8
Q ss_pred ecceeEEEEcCCCCCC---Cc-eEEEEEEEcC---CCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCC
Q 012955 54 VQSKIREIFMPALSST---MT-EGKIVSWIKS---EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVG 126 (452)
Q Consensus 54 ~~~~~~~i~~P~l~~~---~~-eg~I~~w~v~---~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G 126 (452)
.+....++.+-.|+.+ +. .|+--..+.+ .|-.+.-|--.|..|.+.=-..++||..|.|.+.+|+.|+.|.+|
T Consensus 631 mngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~G 710 (2196)
T KOG0368|consen 631 MNGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAG 710 (2196)
T ss_pred EcCcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecC
Confidence 3445567777778776 11 1222222322 244566788888888777677799999999999999999999999
Q ss_pred CeEEEEe
Q 012955 127 AAIGILA 133 (452)
Q Consensus 127 ~~l~~i~ 133 (452)
++-++++
T Consensus 711 q~YAeiE 717 (2196)
T KOG0368|consen 711 QPYAEIE 717 (2196)
T ss_pred Ceeeehe
Confidence 9988875
No 208
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=54.31 E-value=20 Score=29.26 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=31.9
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+..|+|+.+.-.. ...-...|+...-...+ + |-|..+.++.||.|..|+.|+.+...
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~---y-~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITV---Y-GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEE---E-EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEE---E-eccccccceecccccCCCEEEecCCC
Confidence 3567776666522 22333444433321111 1 23556678999999999999999743
No 209
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=54.23 E-value=1.2e+02 Score=31.83 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=52.4
Q ss_pred EEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCC-----------C
Q 012955 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAING-----------G 353 (452)
Q Consensus 285 ~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~-----------G 353 (452)
...+++++.|.++.+. .|.|++++++-|++.+|.++ ++.. ++ .....+.|++.|+.-. |
T Consensus 232 ~~~~~~~~~l~~~a~~---~g~T~ndvllaa~~~al~~~--~~~~---~~--~~~~~i~~~~pv~~R~~~~~~~~~N~~~ 301 (446)
T TIGR02946 232 AAQSLPLADVKAVAKA---FGVTINDVVLAAVAGALRRY--LEER---GE--LPDDPLVAMVPVSLRPMEDDSEGGNQVS 301 (446)
T ss_pred EeeccCHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHH--HHHc---CC--CCCCceEEEEeeeccccccCCCCCCEEE
Confidence 4556777666655433 38999999999999999886 2221 11 2334477777777521 2
Q ss_pred eEeeeecCCCCCCHHHHHHHHHHHHHHHHcC
Q 012955 354 LITPVLQDADKLDLYLLSQKWKELVEKARSK 384 (452)
Q Consensus 354 L~vPVI~~a~~~sl~eia~~i~~l~~kar~g 384 (452)
++...+. .+..+..+..+++++-..++++.
T Consensus 302 ~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~ 331 (446)
T TIGR02946 302 AVLVPLP-TGIADPVERLSAIHASMTRAKES 331 (446)
T ss_pred EEEecCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333332 23344555556666666655554
No 210
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=53.22 E-value=11 Score=42.09 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=29.8
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.|-||..|+|.+|.+++|+.|..|++|+++..
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 47899999999999999999999999999864
No 211
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=53.18 E-value=16 Score=38.41 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
..|+|.++++++|+.|..|++|++|+.+.
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998654
No 212
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=53.05 E-value=19 Score=41.03 Aligned_cols=32 Identities=13% Similarity=0.391 Sum_probs=29.7
Q ss_pred EEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 104 VETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
|-||..|+|.++.|++|+.|+.|++|+.++.-
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAM 1113 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhh
Confidence 78999999999999999999999999999653
No 213
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=52.38 E-value=16 Score=36.47 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=18.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+--++|++++|+.|++||+|++++
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 555677788888888777777776
No 214
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.33 E-value=23 Score=35.09 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=34.8
Q ss_pred cCCCCeecC-CCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 80 KSEGDVLSK-GESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 80 v~~Gd~V~~-gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
++.|+.|.+ |++|++.. .-++++|++|.+ ++-....+.+|+..+.+
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~l 272 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVRL 272 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeeeC
Confidence 456888988 99999943 388999999965 55666777788877653
No 215
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=51.80 E-value=19 Score=36.89 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..-|+||.+|.+ ...++.|+.|..|++|+.|.+.
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECC
Confidence 346999999999 5789999999999999999873
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.61 E-value=15 Score=36.86 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.-++|++++|+.|++||+|++++
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 46789999999999999999887
No 217
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=50.94 E-value=21 Score=28.47 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~ 138 (452)
+..|+. ++++.||.|..|++|+.|....+.
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCChH
Confidence 445654 688999999999999999765443
No 218
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.89 E-value=16 Score=36.82 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-=++|++++||.|++||.|++++
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEE
Confidence 34788999999999999988776
No 219
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=50.73 E-value=37 Score=41.04 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=31.8
Q ss_pred EEEcCCCCeecCCCeEEEEEeC-------ceeeEEEcCCCeEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVESD-------KADMDVETFYDGILAA 114 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetd-------K~~~ev~ap~~G~l~~ 114 (452)
-++|+.|+.|+++|+|+|+-+. |+.=.|.|+.+|.|.+
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~f 448 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRF 448 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEE
Confidence 3689999999999999999863 4666799999997754
No 220
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.18 E-value=29 Score=35.23 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.0
Q ss_pred ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 99 KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 99 K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+...-|+||..|.+ .-.++.|+.|+.|++|+.|.+.
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 34467999999998 5779999999999999999875
No 221
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=49.97 E-value=31 Score=35.95 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=39.5
Q ss_pred EcCCCCeecCCCeEEEEEeCc-eeeE--EEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 79 IKSEGDVLSKGESVVVVESDK-ADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetdK-~~~e--v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+++||.|..||.+.+|.-.. .+.- |+.-..|+|.++ ..+|+ ..+.+.+++++..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeCC
Confidence 479999999999999886332 3444 455568999764 45565 56677888887533
No 222
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=49.89 E-value=13 Score=39.59 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 68 STMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 68 ~~~~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
.-++.+-=++|+++.||+|++||+||.|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 445667778999999999999999999873
No 223
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=49.27 E-value=17 Score=39.77 Aligned_cols=28 Identities=21% Similarity=0.486 Sum_probs=24.6
Q ss_pred ceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 012955 71 TEGKIVSWIKSEGD-VLSKGESVVVVESD 98 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd-~V~~gd~l~~vetd 98 (452)
.+|+|.++++++|| .|..|++||++..+
T Consensus 162 ~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 162 EEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 56999999999996 79999999988543
No 224
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.18 E-value=18 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++|+.|++||+|++++
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEE
Confidence 3889999999999999998887
No 225
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=49.06 E-value=18 Score=36.70 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|++++|+.|++||+|++++
T Consensus 85 ~~v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 85 VTIEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred eEEEEEcCCCCEecCCCEEEEEE
Confidence 34688888888888888888887
No 226
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=48.88 E-value=16 Score=39.64 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 66 l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
+|.-++.+-=++++++.||+|++||+|+.|=.
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 45567778889999999999999999999863
No 227
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=48.83 E-value=15 Score=39.70 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=29.4
Q ss_pred EEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 104 VETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+.+|..|+|.+++++.|+.|..|+.|+.+...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEec
Confidence 78999999999999999999999999988653
No 228
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=48.75 E-value=18 Score=36.08 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|++++|+.|++||+|++++
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEE
Confidence 45678888888888888888776
No 229
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=48.73 E-value=15 Score=39.10 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
-..|.|.+|.-+|||.+..|++||+|+.+..
T Consensus 50 MeeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred ccCCceeeEeeccCCccCCCceEEEEecccc
Confidence 3579999999999999999999999986543
No 230
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.63 E-value=18 Score=36.46 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.-++|++++|+.|++||+|++++
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEE
Confidence 45679999999999999999887
No 231
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.83 E-value=19 Score=36.41 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.-++|+++.||.|++||+|++++
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEE
Confidence 45789999999999999988876
No 232
>PRK04350 thymidine phosphorylase; Provisional
Probab=47.47 E-value=17 Score=39.30 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 66 l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
+|.-++.+-=++++++.||.|++||+|+.|=.
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 45567778889999999999999999999863
No 233
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.16 E-value=20 Score=35.71 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+-=++|++++|+.|++||+|++++
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 455679999999999999888887
No 234
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=47.13 E-value=20 Score=36.56 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+--++|++++|+.|++||+|++++
T Consensus 77 ~~~v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 77 SLKVEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 345679999999999999998887
No 235
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.10 E-value=20 Score=35.88 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=18.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++|+.|++||+|++++
T Consensus 59 ~~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 59 ECVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3688899999999888888887
No 236
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.79 E-value=17 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 68 STMTEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 68 ~~~~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.-++.+-=++|+++.||+|++||+|+.|=
T Consensus 374 d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 374 DTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34566777899999999999999999986
No 237
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.33 E-value=21 Score=36.08 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.-++|++++|+.|++||+|++++
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEE
Confidence 35678888888888888888887
No 238
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.31 E-value=18 Score=39.24 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 66 l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
+|.-++.+-=++++++.||.|++||+|+.|=.
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 45567778889999999999999999999863
No 239
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.16 E-value=21 Score=35.90 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=20.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.--++|++++|+.|++||+|++++
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEE
Confidence 456889999999999999998887
No 240
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=45.71 E-value=18 Score=29.47 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
+-+.+..|++||.|++||.|+.+...
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred eccccccceecccccCCCEEEecCCC
Confidence 44556679999999999999999843
No 241
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=45.68 E-value=17 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.9
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
++.+-=++|+++.||.|++||+|+.|=.++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 466777899999999999999999987554
No 242
>COG3608 Predicted deacylase [General function prediction only]
Probab=45.36 E-value=38 Score=34.87 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=34.0
Q ss_pred eEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 91 SVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 91 ~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.....+++ .--+.||..|.| ..+++.||.|..|+.|+.+.+.+
T Consensus 248 ~~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 248 KGLALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred ceeecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 33344444 445899999988 78999999999999999998743
No 243
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=45.31 E-value=28 Score=36.42 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=38.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE-------eCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV-------VPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~-------v~~G~~v~~G~~l~~i 132 (452)
+|+-+.+.+.|-... +...++.--+|-|-.+|+|.++. |++||.|..||+|..=
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 577777777665433 33334455778899999999885 5678999999999863
No 244
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=45.08 E-value=19 Score=35.10 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=36.0
Q ss_pred CCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEE
Q 012955 83 GDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (452)
Q Consensus 83 Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~ 131 (452)
|+.|++||.+..++-. .++.+--|.+-+--...+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999864 56655555432222567899999999999863
No 245
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=44.13 E-value=18 Score=38.26 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.1
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
++.+-=+.++++.||+|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 56677789999999999999999998643
No 246
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.85 E-value=24 Score=35.43 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|++++|+.|++||+|++++
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEE
Confidence 45678888888888888877776
No 247
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=43.85 E-value=48 Score=36.72 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=41.7
Q ss_pred EcCCCCeecCCCeEEEEEeC---ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 79 IKSEGDVLSKGESVVVVESD---KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetd---K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+++||.|..||.|.+|.-. +-.+-|+.-..|++.+| +.+|+ ..+.+.|+.+.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~ 180 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDE 180 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEcc
Confidence 57899999999999998754 23444666678999665 45565 6788999999764
No 248
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=43.10 E-value=25 Score=35.29 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|+++.|+.|++||.|++++
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEE
Confidence 45778888888888888888876
No 249
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=43.09 E-value=25 Score=34.95 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=17.8
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 012955 76 VSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~ve 96 (452)
++|++++|+.|++||+|++++
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 478889999999888888876
No 250
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=41.20 E-value=60 Score=34.43 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=38.7
Q ss_pred EEEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEec-chhhHHH
Q 012955 94 VVESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAE-TEAEVAQ 141 (452)
Q Consensus 94 ~vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~-~~~~~~~ 141 (452)
.+..-|-..+|.|..+|+|..+ +.+.||.|.+|++|+.|.. .++..+.
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 3445677888999999988877 5678999999999999987 4444444
Q ss_pred HHh
Q 012955 142 AKA 144 (452)
Q Consensus 142 ~~~ 144 (452)
+..
T Consensus 409 ai~ 411 (435)
T COG0213 409 AIK 411 (435)
T ss_pred HHH
Confidence 433
No 251
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=40.39 E-value=27 Score=35.08 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=40.7
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEeCceeeEEEcCCCeEEEE-EEeCCCCccCCCCeEEEEe
Q 012955 74 KIVSWIKSE----GDVLSKGESVVVVESDKADMDVETFYDGILAA-IVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 74 ~I~~w~v~~----Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~-i~v~~G~~v~~G~~l~~i~ 133 (452)
.++.|.... |..|++||.+..++=. .++.+--|.+ .+.. ..+.+|+.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 455665533 7899999999999864 5555444443 4422 3478999999999998764
No 252
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=38.90 E-value=44 Score=28.31 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=33.2
Q ss_pred CCeecCCCeEEEEEe-CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 83 GDVLSKGESVVVVES-DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 83 Gd~V~~gd~l~~vet-dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.....++..|-++.. ++..+.+ ....|.-.+.+|++||.|..||.|+...
T Consensus 12 ~K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 12 HKELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred ccccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecC
Confidence 344555666655553 3344444 3335656688999999999999999874
No 253
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.35 E-value=65 Score=28.90 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=26.7
Q ss_pred EcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 105 ETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 105 ~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.-|..|++.-..+..|+.+..|++++-+..
T Consensus 95 ~iPvEGYvVtpIaDvG~RvrkGd~~AAvtt 124 (161)
T COG4072 95 LIPVEGYVVTPIADVGNRVRKGDPFAAVTT 124 (161)
T ss_pred EEecCcEEEEEeecccchhcCCCceeEEEe
Confidence 348899999999999999999999998864
No 254
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=38.15 E-value=4e+02 Score=28.44 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=71.8
Q ss_pred EEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHH--HHhh--CCcCcceeeCCCeEEEcCCccEEEEEecC---------
Q 012955 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAM--ALVQ--HPVVNASCKDGKSFTYNANINIAVAVAIN--------- 351 (452)
Q Consensus 285 ~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~--AL~~--~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~--------- 351 (452)
....|+.+++..+....+..|-|++++++.|... .+-+ |+. .++.+.|+++||.-
T Consensus 218 ~~~~I~~~ef~~ikay~k~~gaTiNDiilaa~~~fr~~y~~~~~k------------~~~~lsi~~~VDlRkyl~sk~~s 285 (439)
T COG4908 218 EKTTIPSDEFKKIKAYAKVHGATINDIILAALLKFRLLYNTTHEK------------ANNYLSIDMPVDLRKYLPSKEES 285 (439)
T ss_pred EEEecCHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhhchh------------hcCeeeeceeeehhhhccccccc
Confidence 4567888888777666666799999999988843 3322 333 34455556666651
Q ss_pred ----CCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC--------------------------CCCcCccCCCcEEEecC
Q 012955 352 ----GGLITPVLQDADKLDLYLLSQKWKELVEKARSK--------------------------QLQPHEYNSGTFTLSNL 401 (452)
Q Consensus 352 ----~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g--------------------------~l~~~d~~ggTftISNl 401 (452)
.+..+-+|+..+.-++....+.+++....-+.| ++-.+++..|-.+ ||+
T Consensus 286 I~Nls~~~~i~I~~dd~~~fe~t~~~vk~~~~~~k~gl~g~~~~yl~~ilp~~fkr~~~~~~kk~~~~~~~~g~ss-TNi 364 (439)
T COG4908 286 ISNLSSYLTIVINVDDVTDFEKTLEKVKGIMNPKKIGLAGLYSFYLLGILPLMFKRKLYLKLKKLVEDRFVEGKSS-TNI 364 (439)
T ss_pred eeccceeEEEEEeccccccHHHHHHHHHhhcCccccCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccc-ccc
Confidence 147788999999999999998886654422111 2344555555555 999
Q ss_pred CCCC
Q 012955 402 GMFG 405 (452)
Q Consensus 402 G~~G 405 (452)
|-..
T Consensus 365 G~id 368 (439)
T COG4908 365 GIID 368 (439)
T ss_pred cccc
Confidence 9776
No 255
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=38.08 E-value=69 Score=35.54 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=41.1
Q ss_pred EcCCCCeecCCCeEEEEE-eCceeeE--EEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 79 IKSEGDVLSKGESVVVVE-SDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~ve-tdK~~~e--v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+++||.|..||++.+|. +.-.+.- |+.-..|+|.++ ..+|+ ..+.+.|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeCC
Confidence 588999999999999765 3333333 555568999765 45565 67899999998533
No 256
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=37.97 E-value=75 Score=34.76 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=39.1
Q ss_pred cCCCCeecCCCeEEEEEeCc-e-eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 80 KSEGDVLSKGESVVVVESDK-A-DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 80 v~~Gd~V~~gd~l~~vetdK-~-~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+++||+|..||+|..|.-.- . .+-|..+..|.+..+...+|+ ..+.++|+.++++.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~ 179 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEG 179 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCC
Confidence 48999999999999876333 2 233556656666566666675 46788999996544
No 257
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=37.84 E-value=29 Score=35.51 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=35.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|+|+.. |+...-.--+..|..+.-.+.+-+..+ +++|++||.|..|+.|+.+...
T Consensus 236 a~G~Vv~a----g~~~~gyGn~ViI~H~~g~~S~Yahl~----~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 236 ADGRVVYA----GNALRGYGNLIIIKHNDDYLSAYAHND----TMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred cCeEEEEE----eeccCCcceEEEEEeCCceEEEeeCCC----ccccCCcCEECCCCeEEeEcCC
Confidence 35666655 222222123566666666667777654 4578888888888888877643
No 258
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=37.71 E-value=36 Score=35.62 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred ceEEEEEE-------EcCCCCeecCCCeEEE
Q 012955 71 TEGKIVSW-------IKSEGDVLSKGESVVV 94 (452)
Q Consensus 71 ~eg~I~~w-------~v~~Gd~V~~gd~l~~ 94 (452)
..|.|.++ .|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 35777766 5789999999999984
No 259
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=36.69 E-value=49 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.0
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
.|.-| ..|.|..+.+++|+.|..|++|+.|-
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46777 34999999999999999999999875
No 260
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=33.63 E-value=52 Score=40.09 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=32.4
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------CceeeEEEcCCCeEEEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVES--------DKADMDVETFYDGILAAIV 116 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vet--------dK~~~ev~ap~~G~l~~i~ 116 (452)
.++|+.||.|++||+|+|+.. .|+...|-|..+|.|.+-.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~ 452 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWST 452 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccc
Confidence 478999999999999999974 4556788999999865433
No 261
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=33.56 E-value=1.4e+02 Score=21.85 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCc
Q 012955 278 LSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVN 327 (452)
Q Consensus 278 ~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~N 327 (452)
...|+|.+-..-++-+. +++.-+..+-|++..|+.++..+|++...++
T Consensus 2 r~~~~f~lRlP~~l~~~--lk~~A~~~gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEK--LKERAEENGRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHH--HHHHHHHTTS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHH--HHHHHHHhCCChHHHHHHHHHHHHhccccCC
Confidence 35677876655544333 3333334588999999999999999887665
No 262
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=32.84 E-value=28 Score=34.58 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=27.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
--+...+-|...+.+|+|||.|..|++|++=
T Consensus 30 al~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 30 ALLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EEcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 3357788899999999999999999999864
No 263
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=32.11 E-value=79 Score=33.15 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=36.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE-------eCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV-------VPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~-------v~~G~~v~~G~~l~~i 132 (452)
+|+-..+.+.|.....+ .+.+..--+|-|-.+|+|.++. |++||.|..||+|..=
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEe
Confidence 57777777766643111 1122234578889999999885 5667999999998863
No 264
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=31.69 E-value=81 Score=37.40 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=47.0
Q ss_pred EEEcCCCCCCCceEEEEEEE----cCCCCeecCCCeEEEEEeC-ceee--EEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 60 EIFMPALSSTMTEGKIVSWI----KSEGDVLSKGESVVVVESD-KADM--DVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~----v~~Gd~V~~gd~l~~vetd-K~~~--ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
=|.+|.|... .+|. +++||+|.-||++.+|.-. =... -++.-..|+|++| ..+|+ ..+-+.++.+
T Consensus 106 g~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~ 177 (1017)
T PRK14698 106 GISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKV 177 (1017)
T ss_pred CCCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEE
Confidence 3455666654 3443 7889999999999988632 2333 3555568999776 45666 5778999999
Q ss_pred ec
Q 012955 133 AE 134 (452)
Q Consensus 133 ~~ 134 (452)
++
T Consensus 178 ~~ 179 (1017)
T PRK14698 178 KT 179 (1017)
T ss_pred Ec
Confidence 86
No 265
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.31 E-value=48 Score=33.50 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEEEEc--CCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIK--SEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v--~~Gd~V~~gd~l~~ve 96 (452)
..-.+|++ ++|+.|++||.|++++
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEE
Confidence 45567887 9999999999998887
No 266
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=31.29 E-value=1.3e+02 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=27.8
Q ss_pred ceeeEEEcCCCeEE----------------EEEEeCCCCccCCCCeEEEEecchhhH
Q 012955 99 KADMDVETFYDGIL----------------AAIVVPEGESAPVGAAIGILAETEAEV 139 (452)
Q Consensus 99 K~~~ev~ap~~G~l----------------~~i~v~~G~~v~~G~~l~~i~~~~~~~ 139 (452)
+....+.+..+|++ .++++++|+.+..|++|+.+.-.....
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~a~~l 73 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGPARAL 73 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEEHHHH
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeCHHHH
Confidence 34555666666654 457889999999999999997554443
No 267
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=30.53 E-value=28 Score=33.84 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=25.3
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeE
Q 012955 77 SWIKSEGDVLSKGESVVVVESDKADMD 103 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetdK~~~e 103 (452)
.|++.+|..+++=|+.|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999998776
No 268
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=67 Score=29.49 Aligned_cols=39 Identities=38% Similarity=0.641 Sum_probs=31.2
Q ss_pred cEEEecCCCCCCC------CeE-eecCCCceEEEEecCceeEEEEc
Q 012955 395 TFTLSNLGMFGVD------RFD-AILPPGQGAIMAVGASKPTVVAD 433 (452)
Q Consensus 395 TftISNlG~~Gv~------~f~-pii~ppq~aiL~vG~i~~~~v~~ 433 (452)
-|.|--+|.-|+. .|+ .+.+|+|.|.+||+=+.+.+-++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN 52 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC
Confidence 5777777877743 566 78888899999999999888774
No 269
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=30.05 E-value=49 Score=34.22 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
+++ |++++|+.|.+|++|++||-
T Consensus 70 ~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 70 VDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred cEE--EEeCCCCEecCCceEEEEEE
Confidence 554 89999999999999998883
No 270
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.92 E-value=65 Score=33.79 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.4
Q ss_pred eEEEEEE-------EcCCCCeecCCCeEEEEE
Q 012955 72 EGKIVSW-------IKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 72 eg~I~~w-------~v~~Gd~V~~gd~l~~ve 96 (452)
.|.|.++ .|++||.|++||+|..=.
T Consensus 194 dGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~ 225 (382)
T TIGR02876 194 DGVIKRVYVTSGEPVVKKGDVVKKGDLLISGI 225 (382)
T ss_pred CCEEEEEEEcCCeEEEccCCEEcCCCEEEEeE
Confidence 4666665 478999999999998543
No 271
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=29.64 E-value=45 Score=35.32 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=24.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
++.+.=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5667778999999999999999999876
No 272
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=29.60 E-value=1.1e+02 Score=34.05 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=40.8
Q ss_pred EcCCCCeecCCCeEEEEE-eCceeeE--EEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 79 IKSEGDVLSKGESVVVVE-SDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~ve-tdK~~~e--v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+++||.|..||++++|. +.-.+.. +..-..|+|.+| ..+|+ ..+.++++.++..+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 378999999999999884 4434333 455578999766 45565 67889999987533
No 273
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=25.88 E-value=1.4e+02 Score=36.15 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred EEEcCCCCeecCCCeEEEEEeC-------ceeeEEEcCCCeEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVESD-------KADMDVETFYDGILAA 114 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetd-------K~~~ev~ap~~G~l~~ 114 (452)
-++|+.|+.|+++|+|+|+-+. |+.-+|-|..+|-+.+
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~ 448 (1227)
T TIGR02388 404 LLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF 448 (1227)
T ss_pred EEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence 3689999999999999999853 5566677777776543
No 274
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=25.28 E-value=75 Score=33.03 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=11.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+..|.+++|+.|..|++|++||
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~ 93 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIE 93 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEE
Confidence 3455555555555555555554
No 275
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=24.80 E-value=52 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=26.1
Q ss_pred eecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 85 VLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 85 ~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.+++|+-|+.++ .+|+..-..+.+|+.|..|+.|+.+....
T Consensus 75 ~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 75 LLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp EE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred EECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecC
Confidence 456677777665 45777778899999999999999996543
No 276
>PRK02259 aspartoacylase; Provisional
Probab=23.95 E-value=36 Score=34.12 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=38.1
Q ss_pred EEEEEcCCC--CeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955 75 IVSWIKSEG--DVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG 130 (452)
Q Consensus 75 I~~w~v~~G--d~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~ 130 (452)
++.-.++.| +.|++||+|+.. .|--++.++++..|+. +++.|.-.+..|..++
T Consensus 227 ~vhp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 227 MIHPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred EechhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 344456667 559999999998 6777888999999888 4556655565655544
No 277
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=23.38 E-value=82 Score=31.09 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+.+..|.+.+|+.|..||++++||
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~ 72 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIE 72 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEE
Confidence 567788888888888888888887
No 278
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=22.96 E-value=2.5e+02 Score=26.28 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCCCeec--------CCCe-EEEEEeCceeeEEEcCCCeEE-EE--EEeCCCCccCCCCeEEEEecc
Q 012955 72 EGKIVSWIKSEGDVLS--------KGES-VVVVESDKADMDVETFYDGIL-AA--IVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~--------~gd~-l~~vetdK~~~ev~ap~~G~l-~~--i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.|+|.+....+|+... +++- ++.+|++.-.+-+.. ..|.+ .+ .++++|+.+..|+.++.+.-.
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~fG 154 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRFG 154 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEecC
Confidence 4888888888887332 3444 357776542222221 12322 22 356789999999999998643
No 279
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=22.49 E-value=83 Score=32.74 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCcee-eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKAD-MDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~-~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
+.+..|....+..|++||.+...+-.-.. +-++++. .+ +..+++|+.|..|+.|+.+..
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 44566766677899999999998864433 3345664 33 446899999999999987754
No 280
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=22.32 E-value=67 Score=28.02 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=25.0
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCcccchhhHHHh
Q 012955 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (452)
Q Consensus 187 ~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~ 223 (452)
...|.|.++++++|||++.. - -.|+.+|++.+
T Consensus 41 ~~~~~a~~~l~~~Gid~~~~---~--~~l~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH---A--SQLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHcCcCccce---e--ccCCHHHHHhC
Confidence 46899999999999998642 1 27888888665
No 281
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=22.29 E-value=86 Score=27.41 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCCCcCccCCCcEEEec
Q 012955 363 DKLDLYLLSQKWKELVEKA-RSKQLQPHEYNSGTFTLSN 400 (452)
Q Consensus 363 ~~~sl~eia~~i~~l~~ka-r~g~l~~~d~~ggTftISN 400 (452)
+.=+-.+|.+...+|.... +.|.|.++|...-+||+|.
T Consensus 11 ~~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 11 ERNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecC
Confidence 3446789999999998766 8899999999999999986
No 282
>PRK11637 AmiB activator; Provisional
Probab=20.81 E-value=1.1e+02 Score=32.34 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=0.0
Q ss_pred EEEcCCCeEEEEE----------------------------EeCCCCccCCCCeEEEEecch
Q 012955 103 DVETFYDGILAAI----------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 103 ev~ap~~G~l~~i----------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|.|+.+|+|... .|.+|+.|..|++|+.+...+
T Consensus 341 ~v~A~~~G~V~~~~~~~~~G~~vii~hg~g~~t~Y~~~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 341 EVKAIADGRVLLADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred eEEecCCeEEEEeeccCCcccEEEEEeCCCcEEEccCCCcCCCCCcCEECCCCeEEeecCCC
No 283
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=20.55 E-value=1e+02 Score=31.27 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=10.7
Q ss_pred cCCCCeecCCCeEEEEE
Q 012955 80 KSEGDVLSKGESVVVVE 96 (452)
Q Consensus 80 v~~Gd~V~~gd~l~~ve 96 (452)
+++|+.|..|++|++||
T Consensus 58 ~~dG~~v~~g~~i~~i~ 74 (302)
T cd01571 58 LPEGTIFNPKEPVLRIE 74 (302)
T ss_pred eCCCCEECCCCcEEEEE
Confidence 56666666666666665
No 284
>COG4325 Predicted membrane protein [Function unknown]
Probab=20.44 E-value=1.2e+02 Score=32.09 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=30.4
Q ss_pred eeEEEcCCCeEEEEE------------------EeCCCCccCCCCeEEEEecchh
Q 012955 101 DMDVETFYDGILAAI------------------VVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i------------------~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
..+|+++..|+|.+| ...+||.|..|++|+.+....+
T Consensus 229 a~~Ira~~sGyLq~ID~~~L~k~A~a~~~~Ihl~~r~Gdfvv~g~~L~~~~~~~~ 283 (464)
T COG4325 229 AVPIRAPHSGYLQTIDVDDLAKKAAASRYTIHLVTRVGDFVVAGGLLGWCWRRGT 283 (464)
T ss_pred cceeecCCccceEEeeHHHHHHHHHhhceEEEEEecCcceecCCCcEEEEecCCc
Confidence 567889999988877 4578999999999999976543
No 285
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=20.37 E-value=99 Score=27.02 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCCCcCccCCCcEEEec
Q 012955 363 DKLDLYLLSQKWKELVEKA-RSKQLQPHEYNSGTFTLSN 400 (452)
Q Consensus 363 ~~~sl~eia~~i~~l~~ka-r~g~l~~~d~~ggTftISN 400 (452)
+.=+-.+|.+...+|.... +.|+|.++|...-+||+|.
T Consensus 11 ~~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 11 EENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 3446789999999998766 8899999999999999985
No 286
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=20.32 E-value=1.4e+02 Score=39.16 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred EEcCCCCeecCCCeEEEEEeCce--------------eeEEE----------cCCCeEEE--------------------
Q 012955 78 WIKSEGDVLSKGESVVVVESDKA--------------DMDVE----------TFYDGILA-------------------- 113 (452)
Q Consensus 78 w~v~~Gd~V~~gd~l~~vetdK~--------------~~ev~----------ap~~G~l~-------------------- 113 (452)
+.|++||.|+.||+|+.+-..-+ -+|-+ |+.+|+|.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~~~~ 2695 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRS 2695 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCCCce
Q ss_pred ---------EEEeCCCCccCCCCeE
Q 012955 114 ---------AIVVPEGESAPVGAAI 129 (452)
Q Consensus 114 ---------~i~v~~G~~v~~G~~l 129 (452)
+++|++||.|..|+.|
T Consensus 2696 ~~y~v~~~~~~~v~~gd~v~~G~~l 2720 (2890)
T PRK09603 2696 MDYFVDKGKQILVHADEFVHAGEAM 2720 (2890)
T ss_pred eEEEccCCceeeecCCCEEccCCCc
Done!