Query 012955
Match_columns 452
No_of_seqs 254 out of 2067
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:28:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 4.4E-84 1.5E-88 673.4 3.2 387 58-450 2-397 (428)
2 3l60_A Branched-chain alpha-ke 100.0 7.6E-52 2.6E-56 402.2 22.6 188 262-450 18-211 (250)
3 3mae_A 2-oxoisovalerate dehydr 100.0 6.5E-52 2.2E-56 404.0 20.9 192 257-450 17-216 (256)
4 2ii3_A Lipoamide acyltransfera 100.0 3.8E-51 1.3E-55 400.2 22.2 194 257-450 30-230 (262)
5 1scz_A E2, dihydrolipoamide su 100.0 3.5E-51 1.2E-55 394.4 19.7 191 258-450 4-202 (233)
6 1dpb_A Dihydrolipoyl-transacet 100.0 1.2E-50 4E-55 393.1 22.1 192 258-450 15-214 (243)
7 3b8k_A PDCE2;, dihydrolipoylly 100.0 2.9E-50 9.9E-55 389.5 11.5 193 257-450 11-210 (239)
8 3rqc_A Probable lipoamide acyl 100.0 8.7E-49 3E-53 375.6 18.5 184 258-450 6-193 (224)
9 2xt6_A 2-oxoglutarate decarbox 100.0 1.4E-39 4.8E-44 370.8 13.1 178 273-450 1-198 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 2.9E-33 1E-37 267.0 23.1 173 263-450 13-191 (219)
11 3cla_A Type III chloramphenico 100.0 7.3E-33 2.5E-37 263.3 21.0 169 268-450 13-187 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 8.9E-32 3.1E-36 256.3 19.9 170 268-450 15-195 (217)
13 1zy8_K Pyruvate dehydrogenase 100.0 9.6E-32 3.3E-36 257.7 3.9 167 57-226 2-169 (229)
14 2dne_A Dihydrolipoyllysine-res 99.8 3E-19 1E-23 152.0 11.8 87 56-142 5-92 (108)
15 1y8o_B Dihydrolipoyllysine-res 99.8 9.7E-19 3.3E-23 153.0 12.3 85 55-139 24-109 (128)
16 3crk_C Dihydrolipoyllysine-res 99.8 1.1E-18 3.6E-23 142.7 11.6 81 57-137 4-85 (87)
17 2dnc_A Pyruvate dehydrogenase 99.8 1.1E-18 3.8E-23 145.9 9.9 81 57-137 6-87 (98)
18 1k8m_A E2 component of branche 99.8 2.1E-18 7.2E-23 142.8 9.5 80 56-135 2-81 (93)
19 1ghj_A E2, E2, the dihydrolipo 99.7 2.2E-17 7.6E-22 132.0 9.0 76 59-134 2-77 (79)
20 2l5t_A Lipoamide acyltransfera 99.7 1.5E-16 5.1E-21 126.5 8.2 75 59-133 2-76 (77)
21 1qjo_A Dihydrolipoamide acetyl 99.7 1.6E-16 5.5E-21 127.2 8.3 76 58-135 2-77 (80)
22 1pmr_A Dihydrolipoyl succinylt 99.6 4.7E-18 1.6E-22 136.5 -2.1 76 59-134 3-78 (80)
23 1iyu_A E2P, dihydrolipoamide a 99.6 1.4E-15 4.9E-20 121.5 9.2 74 59-135 2-75 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.6 4.6E-16 1.6E-20 124.9 3.7 77 58-135 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.4 8.7E-15 3E-19 118.7 -1.1 72 59-136 3-74 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.4 9.9E-13 3.4E-17 102.5 9.1 63 72-134 7-69 (72)
27 2kcc_A Acetyl-COA carboxylase 99.4 3.7E-13 1.2E-17 109.0 5.9 64 72-136 13-76 (84)
28 2jku_A Propionyl-COA carboxyla 99.3 2.3E-13 7.9E-18 112.5 2.7 79 55-133 12-94 (94)
29 2dn8_A Acetyl-COA carboxylase 99.3 2.9E-12 1E-16 107.0 8.5 62 72-134 25-86 (100)
30 2d5d_A Methylmalonyl-COA decar 99.3 1.4E-11 4.7E-16 96.3 9.4 62 72-133 13-74 (74)
31 1dcz_A Transcarboxylase 1.3S s 99.3 1.4E-11 4.7E-16 97.4 8.8 62 72-133 16-77 (77)
32 1bdo_A Acetyl-COA carboxylase; 99.3 1.1E-11 3.9E-16 98.8 7.6 61 73-133 13-80 (80)
33 2ejm_A Methylcrotonoyl-COA car 99.2 1.5E-11 5.1E-16 102.5 6.8 65 72-136 22-86 (99)
34 2eq9_C Pyruvate dehydrogenase 99.2 7.8E-12 2.7E-16 87.6 4.0 40 186-225 1-40 (41)
35 3rnm_E Lipoamide acyltransfera 99.2 7.3E-12 2.5E-16 94.2 3.4 43 184-226 6-48 (58)
36 3n6r_A Propionyl-COA carboxyla 99.2 3.1E-11 1.1E-15 132.3 9.2 62 72-133 620-681 (681)
37 2eq8_C Pyruvate dehydrogenase 99.2 1.4E-11 4.7E-16 85.8 3.7 38 188-225 2-39 (40)
38 2eq7_C 2-oxoglutarate dehydrog 99.2 1.1E-11 3.8E-16 86.3 3.1 38 188-225 2-39 (40)
39 3va7_A KLLA0E08119P; carboxyla 99.1 1.2E-10 4.2E-15 134.6 10.4 60 73-132 1176-1235(1236)
40 1w85_I Dihydrolipoyllysine-res 99.1 3.9E-11 1.3E-15 87.3 3.7 43 184-226 5-47 (49)
41 3hbl_A Pyruvate carboxylase; T 99.1 1.4E-10 4.9E-15 133.5 10.3 63 73-135 1086-1148(1150)
42 3u9t_A MCC alpha, methylcroton 99.1 1E-11 3.4E-16 136.1 0.0 64 72-135 610-673 (675)
43 1bal_A Dihydrolipoamide succin 99.1 4.5E-11 1.5E-15 87.7 3.4 42 184-225 8-49 (51)
44 2f60_K Pyruvate dehydrogenase 99.0 1.4E-10 4.9E-15 89.0 2.7 43 184-226 8-50 (64)
45 1w4i_A Pyruvate dehydrogenase 99.0 2.3E-10 7.9E-15 87.3 3.3 42 185-226 4-45 (62)
46 2coo_A Lipoamide acyltransfera 99.0 4.7E-10 1.6E-14 87.6 5.0 43 184-226 14-56 (70)
47 2k32_A A; NMR {Campylobacter j 98.8 3.5E-09 1.2E-13 90.2 5.5 67 72-138 9-105 (116)
48 3bg3_A Pyruvate carboxylase, m 98.8 1.3E-09 4.4E-14 119.6 2.6 61 72-132 657-717 (718)
49 1zko_A Glycine cleavage system 98.8 7.6E-09 2.6E-13 91.0 7.0 71 60-136 38-116 (136)
50 2qf7_A Pyruvate carboxylase pr 98.7 4.4E-09 1.5E-13 121.4 5.3 61 73-133 1104-1164(1165)
51 1onl_A Glycine cleavage system 98.3 6.1E-07 2.1E-11 78.1 6.7 71 59-135 28-106 (128)
52 1hpc_A H protein of the glycin 98.3 3E-07 1E-11 80.4 4.1 71 59-135 28-106 (131)
53 3a7l_A H-protein, glycine clea 98.3 8E-07 2.7E-11 77.4 6.0 71 59-135 29-107 (128)
54 3ne5_B Cation efflux system pr 97.9 1.4E-05 4.8E-10 82.4 7.5 64 72-135 129-241 (413)
55 3lnn_A Membrane fusion protein 97.9 1.3E-05 4.4E-10 80.4 6.8 64 73-136 66-206 (359)
56 2f1m_A Acriflavine resistance 97.9 6.5E-06 2.2E-10 79.7 4.3 64 73-136 31-167 (277)
57 3fpp_A Macrolide-specific effl 97.8 1.5E-05 5.1E-10 79.4 5.8 64 73-136 40-191 (341)
58 3klr_A Glycine cleavage system 97.7 5.3E-05 1.8E-09 65.4 6.3 61 73-133 32-100 (125)
59 1vf7_A Multidrug resistance pr 97.6 3.2E-05 1.1E-09 78.3 4.0 64 72-135 51-173 (369)
60 3mxu_A Glycine cleavage system 97.5 0.00012 4E-09 64.6 6.3 76 58-134 40-123 (143)
61 3tzu_A GCVH, glycine cleavage 97.5 0.00011 3.9E-09 64.3 5.7 44 73-116 49-93 (137)
62 3hgb_A Glycine cleavage system 97.2 0.00052 1.8E-08 61.2 6.3 44 73-116 59-103 (155)
63 4dk0_A Putative MACA; alpha-ha 97.1 2.4E-05 8.3E-10 78.6 -4.1 63 72-134 40-190 (369)
64 3na6_A Succinylglutamate desuc 96.7 0.0034 1.2E-07 62.8 8.0 59 75-135 267-329 (331)
65 3cdx_A Succinylglutamatedesucc 96.5 0.0046 1.6E-07 62.3 8.0 60 73-135 276-339 (354)
66 3fmc_A Putative succinylglutam 96.4 0.0064 2.2E-07 61.7 8.1 59 74-134 299-363 (368)
67 2dn8_A Acetyl-COA carboxylase 96.3 0.0014 4.7E-08 54.0 2.1 46 89-134 5-50 (100)
68 1z6h_A Biotin/lipoyl attachmen 95.7 0.009 3.1E-07 45.4 4.2 33 103-135 1-33 (72)
69 1dcz_A Transcarboxylase 1.3S s 95.6 0.01 3.6E-07 45.7 4.3 35 101-135 8-42 (77)
70 2d5d_A Methylmalonyl-COA decar 95.6 0.013 4.6E-07 44.5 4.8 34 102-135 6-39 (74)
71 1f3z_A EIIA-GLC, glucose-speci 95.2 0.016 5.5E-07 52.0 4.6 64 60-133 14-116 (161)
72 2k32_A A; NMR {Campylobacter j 95.1 0.019 6.6E-07 48.0 4.5 34 102-135 2-35 (116)
73 2qj8_A MLR6093 protein; struct 94.9 0.045 1.5E-06 54.4 7.3 60 73-134 265-328 (332)
74 2gpr_A Glucose-permease IIA co 94.7 0.023 7.8E-07 50.7 4.0 65 59-133 8-111 (154)
75 2kcc_A Acetyl-COA carboxylase 94.5 0.019 6.3E-07 45.6 2.7 33 102-134 6-38 (84)
76 1ax3_A Iiaglc, glucose permeas 94.4 0.022 7.4E-07 51.2 3.2 58 72-133 20-116 (162)
77 2f1m_A Acriflavine resistance 94.2 0.066 2.3E-06 51.2 6.5 55 81-136 3-57 (277)
78 2jku_A Propionyl-COA carboxyla 93.5 0.038 1.3E-06 44.7 2.8 35 101-135 25-59 (94)
79 2ejm_A Methylcrotonoyl-COA car 93.4 0.047 1.6E-06 44.6 3.1 35 101-135 14-48 (99)
80 1bdo_A Acetyl-COA carboxylase; 93.1 0.059 2E-06 41.8 3.2 34 102-135 5-45 (80)
81 2xha_A NUSG, transcription ant 93.0 0.088 3E-06 48.4 4.6 32 77-114 22-53 (193)
82 3d4r_A Domain of unknown funct 92.6 0.12 4.1E-06 46.2 4.8 45 72-116 108-153 (169)
83 3lnn_A Membrane fusion protein 92.6 0.069 2.4E-06 53.0 3.7 56 81-136 36-92 (359)
84 3fpp_A Macrolide-specific effl 92.5 0.11 3.7E-06 51.1 4.9 57 79-136 10-66 (341)
85 2l5t_A Lipoamide acyltransfera 91.2 0.19 6.5E-06 38.5 4.0 26 72-97 52-77 (77)
86 1qjo_A Dihydrolipoamide acetyl 91.1 0.2 6.8E-06 38.7 4.0 28 109-136 14-41 (80)
87 1gjx_A Pyruvate dehydrogenase; 90.9 0.18 6.2E-06 39.1 3.6 31 105-135 11-41 (81)
88 1vf7_A Multidrug resistance pr 90.3 0.23 7.7E-06 49.8 4.7 46 90-136 33-78 (369)
89 1k8m_A E2 component of branche 90.3 0.29 1E-05 39.4 4.5 29 107-135 16-44 (93)
90 3crk_C Dihydrolipoyllysine-res 90.2 0.22 7.5E-06 39.4 3.6 29 107-135 17-45 (87)
91 1ghj_A E2, E2, the dihydrolipo 90.2 0.12 4E-06 40.0 1.9 30 106-135 12-41 (79)
92 3ne5_B Cation efflux system pr 90.2 0.26 8.7E-06 50.3 5.0 55 82-136 101-157 (413)
93 2k7v_A Dihydrolipoyllysine-res 90.1 0.02 6.9E-07 45.3 -2.7 34 102-135 3-36 (85)
94 2dnc_A Pyruvate dehydrogenase 90.0 0.24 8.1E-06 40.4 3.7 28 108-135 20-47 (98)
95 2xhc_A Transcription antitermi 89.6 0.3 1E-05 49.0 4.9 31 77-113 62-92 (352)
96 2dne_A Dihydrolipoyllysine-res 89.4 0.27 9.3E-06 40.8 3.7 28 108-135 20-47 (108)
97 2auk_A DNA-directed RNA polyme 89.4 0.38 1.3E-05 44.1 5.0 45 77-123 63-107 (190)
98 1y8o_B Dihydrolipoyllysine-res 87.1 0.62 2.1E-05 40.0 4.6 29 108-136 40-68 (128)
99 1iyu_A E2P, dihydrolipoamide a 87.1 0.38 1.3E-05 37.0 3.0 35 58-98 41-75 (79)
100 4dk0_A Putative MACA; alpha-ha 86.9 0.16 5.6E-06 50.4 0.9 56 80-136 12-67 (369)
101 1pmr_A Dihydrolipoyl succinylt 85.1 0.16 5.3E-06 39.5 -0.3 28 107-134 14-41 (80)
102 2xha_A NUSG, transcription ant 84.3 0.33 1.1E-05 44.6 1.5 46 80-131 85-158 (193)
103 3n6r_A Propionyl-COA carboxyla 83.6 0.88 3E-05 49.6 4.8 35 101-135 612-646 (681)
104 3our_B EIIA, phosphotransferas 83.1 1.8 6.2E-05 39.3 5.9 66 59-134 35-139 (183)
105 3bg3_A Pyruvate carboxylase, m 77.4 1.5 5.2E-05 48.0 4.0 34 102-135 650-683 (718)
106 3hbl_A Pyruvate carboxylase; T 77.1 1.8 6.2E-05 50.0 4.7 34 102-135 1078-1111(1150)
107 3va7_A KLLA0E08119P; carboxyla 76.7 1.8 6.3E-05 50.3 4.6 35 102-136 1168-1202(1236)
108 3lu0_D DNA-directed RNA polyme 76.1 1.9 6.4E-05 50.0 4.4 36 77-114 1002-1037(1407)
109 2bco_A Succinylglutamate desuc 74.3 2.3 8E-05 42.3 4.2 50 78-134 279-328 (350)
110 3u9t_A MCC alpha, methylcroton 71.0 0.85 2.9E-05 49.7 0.0 34 102-135 603-636 (675)
111 2qf7_A Pyruvate carboxylase pr 70.8 3.1 0.00011 48.1 4.6 33 102-134 1096-1128(1165)
112 3our_B EIIA, phosphotransferas 68.3 2.8 9.5E-05 38.1 2.8 40 59-99 100-141 (183)
113 1zy8_K Pyruvate dehydrogenase 65.5 1.3 4.4E-05 41.7 0.0 31 106-136 14-44 (229)
114 2dsj_A Pyrimidine-nucleoside ( 63.9 8 0.00027 39.6 5.5 47 95-142 322-399 (423)
115 3fmc_A Putative succinylglutam 62.6 6.3 0.00022 39.5 4.5 33 101-134 290-322 (368)
116 3dva_I Dihydrolipoyllysine-res 62.4 1.6 5.5E-05 44.9 0.0 29 71-99 52-80 (428)
117 2gpr_A Glucose-permease IIA co 62.1 4.4 0.00015 35.8 2.8 70 59-132 73-153 (154)
118 1brw_A PYNP, protein (pyrimidi 61.8 8.4 0.00029 39.6 5.3 46 95-140 329-405 (433)
119 3h5q_A PYNP, pyrimidine-nucleo 61.0 9.1 0.00031 39.4 5.4 38 97-134 334-402 (436)
120 1qpo_A Quinolinate acid phosph 58.9 6.6 0.00023 38.0 3.7 23 74-96 71-93 (284)
121 2tpt_A Thymidine phosphorylase 58.1 10 0.00036 39.0 5.2 43 95-137 334-407 (440)
122 1f3z_A EIIA-GLC, glucose-speci 57.9 5.7 0.00019 35.3 2.8 27 72-98 92-118 (161)
123 3na6_A Succinylglutamate desuc 57.3 8 0.00027 38.1 4.1 34 101-135 257-290 (331)
124 2xhc_A Transcription antitermi 56.9 4.3 0.00015 40.7 2.0 51 80-131 125-198 (352)
125 1x1o_A Nicotinate-nucleotide p 56.8 6.3 0.00021 38.2 3.1 22 75-96 73-94 (286)
126 3tqv_A Nicotinate-nucleotide p 56.3 6.5 0.00022 38.2 3.1 21 76-96 77-97 (287)
127 1o4u_A Type II quinolic acid p 55.9 5.9 0.0002 38.5 2.8 22 75-96 72-93 (285)
128 3l0g_A Nicotinate-nucleotide p 55.7 7 0.00024 38.2 3.3 22 75-96 85-106 (300)
129 2b7n_A Probable nicotinate-nuc 54.9 8.5 0.00029 36.9 3.7 21 76-96 60-80 (273)
130 3gnn_A Nicotinate-nucleotide p 53.5 7.6 0.00026 37.9 3.1 21 76-96 88-108 (298)
131 1ax3_A Iiaglc, glucose permeas 53.0 5.4 0.00018 35.5 1.8 28 72-99 92-119 (162)
132 3paj_A Nicotinate-nucleotide p 52.3 8.2 0.00028 38.1 3.1 24 73-96 107-130 (320)
133 1qap_A Quinolinic acid phospho 51.2 8.7 0.0003 37.4 3.1 23 74-96 85-107 (296)
134 2jbm_A Nicotinate-nucleotide p 46.6 10 0.00034 37.0 2.8 21 76-96 73-93 (299)
135 3h5q_A PYNP, pyrimidine-nucleo 45.2 11 0.00038 38.7 2.9 31 69-99 374-404 (436)
136 3it5_A Protease LASA; metallop 44.5 8.9 0.00031 34.6 1.9 19 78-96 85-103 (182)
137 2dsj_A Pyrimidine-nucleoside ( 42.1 16 0.00055 37.4 3.6 31 69-99 363-393 (423)
138 1uou_A Thymidine phosphorylase 41.9 27 0.00091 36.3 5.2 42 95-136 366-436 (474)
139 1brw_A PYNP, protein (pyrimidi 41.8 16 0.00055 37.5 3.6 31 69-99 371-401 (433)
140 3cdx_A Succinylglutamatedesucc 41.3 24 0.00083 34.8 4.7 36 99-135 265-300 (354)
141 3twe_A Alpha4H; unknown functi 40.6 26 0.00089 20.9 2.8 19 366-384 9-27 (27)
142 1uou_A Thymidine phosphorylase 39.8 19 0.00065 37.4 3.7 30 70-99 407-436 (474)
143 3it5_A Protease LASA; metallop 37.3 33 0.0011 30.8 4.5 65 57-135 33-105 (182)
144 2hsi_A Putative peptidase M23; 33.8 19 0.00064 34.8 2.4 18 116-133 233-250 (282)
145 3tuf_B Stage II sporulation pr 33.6 18 0.00063 34.1 2.2 26 73-98 130-155 (245)
146 1qwy_A Peptidoglycan hydrolase 33.4 19 0.00066 34.9 2.4 21 115-135 239-259 (291)
147 3c2e_A Nicotinate-nucleotide p 33.3 19 0.00063 35.0 2.3 21 76-96 69-95 (294)
148 2tpt_A Thymidine phosphorylase 32.7 17 0.00057 37.5 1.9 31 69-99 376-406 (440)
149 1baz_A ARC repressor; transcri 31.8 75 0.0026 22.4 4.8 48 279-328 6-53 (53)
150 1zko_A Glycine cleavage system 30.7 43 0.0015 28.7 3.9 32 104-135 39-71 (136)
151 3d4r_A Domain of unknown funct 30.3 32 0.0011 30.6 3.1 40 85-135 95-134 (169)
152 3tuf_B Stage II sporulation pr 29.9 41 0.0014 31.7 4.0 26 110-135 130-155 (245)
153 3nyy_A Putative glycyl-glycine 28.1 26 0.00088 33.2 2.2 18 79-96 183-200 (252)
154 1q9j_A PAPA5, polyketide synth 27.7 2.8E+02 0.0095 26.5 10.0 88 285-383 214-316 (422)
155 2lmc_B DNA-directed RNA polyme 27.4 7.3 0.00025 30.8 -1.5 16 78-93 67-82 (84)
156 4etm_A LMPTP, low molecular we 26.7 38 0.0013 30.0 3.0 33 187-223 67-99 (173)
157 2qj8_A MLR6093 protein; struct 25.1 56 0.0019 31.7 4.2 34 101-135 257-290 (332)
158 3csq_A Morphogenesis protein 1 25.0 20 0.00068 35.3 0.9 21 77-97 250-270 (334)
159 1xho_A Chorismate mutase; sout 24.9 60 0.002 28.2 3.7 46 355-400 31-80 (148)
160 2gu1_A Zinc peptidase; alpha/b 24.4 33 0.0011 34.0 2.4 19 116-134 285-303 (361)
161 1hpc_A H protein of the glycin 23.2 81 0.0028 26.7 4.3 31 104-134 30-61 (131)
162 3vr4_A V-type sodium ATPase ca 23.2 1.2E+02 0.0042 32.2 6.5 53 79-134 130-185 (600)
163 2auk_A DNA-directed RNA polyme 22.4 42 0.0014 30.3 2.4 19 78-96 168-186 (190)
164 1jf8_A Arsenate reductase; ptp 21.0 60 0.0021 27.1 3.0 33 187-223 43-75 (131)
165 1dbf_A Protein (chorismate mut 20.2 68 0.0023 27.2 3.1 38 363-400 13-51 (127)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=4.4e-84 Score=673.38 Aligned_cols=387 Identities=27% Similarity=0.378 Sum_probs=40.2
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
.++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|+.|+++++
T Consensus 2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred hHHHHHhhhhccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccc
Q 012955 138 EVAQAKAKAASAGAAAPASH-PVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT 216 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~ 216 (452)
+...............+... .+.+.+...+.+... ........++++++||+|||||+||||||++|.|||++|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~ 159 (428)
T 3dva_I 82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAP--AAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVL 159 (428)
T ss_dssp ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCC
T ss_pred cccccccccccccccCCCcccCCccccccCCCcccc--ccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCcee
Confidence 43221100000000000000 000000000000000 000011123468999999999999999999999999999999
Q ss_pred hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHH
Q 012955 217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD 295 (452)
Q Consensus 217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~ 295 (452)
++||++|+.........+ . +.+. ...+............+++||++|||.||++|.+| +++||||++.+||+++|+
T Consensus 160 k~DV~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~ 236 (428)
T 3dva_I 160 KEDIDAFLAGGAKPAPAA-A-EEKA-APAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLV 236 (428)
T ss_dssp TTTTTTTSCC----------------------------------------------------------------------
T ss_pred HHHHHHHhhccccccccc-c-cccc-ccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHH
Confidence 999999986432110000 0 0000 00000000000111256799999999999999999 799999999999999999
Q ss_pred HHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHH
Q 012955 296 ALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLY 368 (452)
Q Consensus 296 ~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ 368 (452)
++|+++++. ++|+++||+||+++||++||+||++|+++ +.|++|+++|||+||++++||++|||+|++++||.
T Consensus 237 ~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ 316 (428)
T 3dva_I 237 AHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIF 316 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHH
Confidence 999999841 69999999999999999999999999752 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEE
Q 012955 369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448 (452)
Q Consensus 369 eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltl 448 (452)
+|++++++|.+|+|+|+|.++|++||||||||+|+||+++|+||||+||+|||++|+++++||+. ||++++|++|+|+|
T Consensus 317 eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~-~g~i~~r~~m~lsl 395 (428)
T 3dva_I 317 ALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSL 395 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEE-CCEEEEeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999995 89999999999999
Q ss_pred Ee
Q 012955 449 IS 450 (452)
Q Consensus 449 t~ 450 (452)
+|
T Consensus 396 s~ 397 (428)
T 3dva_I 396 SF 397 (428)
T ss_dssp --
T ss_pred Ee
Confidence 97
No 2
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=7.6e-52 Score=402.25 Aligned_cols=188 Identities=27% Similarity=0.399 Sum_probs=182.6
Q ss_pred ccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeC---CCe
Q 012955 262 PFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKD---GKS 335 (452)
Q Consensus 262 p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~---~~~ 335 (452)
|++++||+||++|.+| +++||||++.+||+++|.++|+++|+. ++|+++||+||+++||++||+||++|++ +++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~ 97 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQ 97 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSCE
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCCe
Confidence 9999999999999999 699999999999999999999999865 7899999999999999999999999975 358
Q ss_pred EEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCC
Q 012955 336 FTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPP 415 (452)
Q Consensus 336 i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~p 415 (452)
|++++++|||+||++++||++|||+|++++|+.||++++++|++|+|+|+|.++|++||||||||+|+||+++|+|||||
T Consensus 98 i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIinp 177 (250)
T 3l60_A 98 VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINH 177 (250)
T ss_dssp EEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCCT
T ss_pred EEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 416 GQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 416 pq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
||+|||++|+++++||++ ||++++|++|+|||||
T Consensus 178 pq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~ 211 (250)
T 3l60_A 178 PEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVF 211 (250)
T ss_dssp TCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred CCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEe
Confidence 999999999999999996 7999999999999998
No 3
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=6.5e-52 Score=404.01 Aligned_cols=192 Identities=28% Similarity=0.376 Sum_probs=185.2
Q ss_pred CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcc
Q 012955 257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNA 328 (452)
Q Consensus 257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns 328 (452)
+.+++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||+
T Consensus 17 ~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na 96 (256)
T 3mae_A 17 GDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNS 96 (256)
T ss_dssp SCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSE
T ss_pred CceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhh
Confidence 467899999999999999999 69999999999999999999999873 3899999999999999999999999
Q ss_pred eeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCC
Q 012955 329 SCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408 (452)
Q Consensus 329 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~ 408 (452)
+|+ ++.++++++||||+||++++||++|||+|+|++|+.||++++++|++|+|+|+|.++|++||||||||+|+||+++
T Consensus 97 ~~~-~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ 175 (256)
T 3mae_A 97 TWA-GDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQ 175 (256)
T ss_dssp EEE-TTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSE
T ss_pred EEe-cCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccc
Confidence 997 4699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 409 FDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 409 f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
|+|||||||+|||++|+++++||++ ||++++|++|+|||||
T Consensus 176 ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~ 216 (256)
T 3mae_A 176 SMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSI 216 (256)
T ss_dssp EECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred eEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEE
Confidence 9999999999999999999999996 7999999999999998
No 4
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=3.8e-51 Score=400.17 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=186.1
Q ss_pred CCceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955 257 GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC 330 (452)
Q Consensus 257 ~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~ 330 (452)
.++++|++++||+||++|.+|+++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||++|
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~ 109 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV 109 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence 45679999999999999999988999999999999999999999874 489999999999999999999999999
Q ss_pred eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955 331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409 (452)
Q Consensus 331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f 409 (452)
+++ +.+++++++|||+||++++||++|||+|++++|+.+|+++++++++|+|+|+|.++|++||||||||+|+||+++|
T Consensus 110 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~ 189 (262)
T 2ii3_A 110 DENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYA 189 (262)
T ss_dssp CTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCE
T ss_pred eCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccce
Confidence 754 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
+|||||||+|||++|+++++||+++||+|++|++|+|+|+|
T Consensus 190 tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~ 230 (262)
T 2ii3_A 190 KPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSA 230 (262)
T ss_dssp ECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred ECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEE
Confidence 99999999999999999999999657899999999999998
No 5
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=3.5e-51 Score=394.42 Aligned_cols=191 Identities=28% Similarity=0.402 Sum_probs=184.0
Q ss_pred CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcce
Q 012955 258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNAS 329 (452)
Q Consensus 258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~ 329 (452)
.+++|++++||+||++|.+| .++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 35689999999999999999 78999999999999999999999874 48999999999999999999999999
Q ss_pred eeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955 330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409 (452)
Q Consensus 330 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f 409 (452)
|+ ++.+++++++|||+||++++||++|||+|++++|+.||+++++++.+|+|+|+|.++|++||||||||+|+||+.+|
T Consensus 84 ~~-~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~ 162 (233)
T 1scz_A 84 ID-GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS 162 (233)
T ss_dssp EE-TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred Ee-CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccce
Confidence 97 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
+|||||||+|||++|+++++||++ ||++++|++|+|+|+|
T Consensus 163 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~ 202 (233)
T 1scz_A 163 TPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSY 202 (233)
T ss_dssp CCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred EcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEE
Confidence 999999999999999999999996 7999999999999998
No 6
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=1.2e-50 Score=393.07 Aligned_cols=192 Identities=29% Similarity=0.348 Sum_probs=184.8
Q ss_pred CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955 258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC 330 (452)
Q Consensus 258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~ 330 (452)
.+++|++++||.|+++|.+| +++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||++|
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~ 94 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL 94 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEE
Confidence 35689999999999999999 79999999999999999999998875 489999999999999999999999999
Q ss_pred eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955 331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409 (452)
Q Consensus 331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f 409 (452)
+++ +.+++++++|||+||++++||++|||+|+|++|+.||+++++++++|+|+|+|.++|++||||||||+|+||+++|
T Consensus 95 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~ 174 (243)
T 1dpb_A 95 APSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAF 174 (243)
T ss_dssp CTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCC
T ss_pred ecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccce
Confidence 753 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
+|||||||+|||++|+++++||++ ||++++|++|+|+|+|
T Consensus 175 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~ 214 (243)
T 1dpb_A 175 TPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSY 214 (243)
T ss_dssp CCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEE
T ss_pred ECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEE
Confidence 999999999999999999999996 7999999999999998
No 7
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-50 Score=389.54 Aligned_cols=193 Identities=30% Similarity=0.511 Sum_probs=184.8
Q ss_pred CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955 257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASC 330 (452)
Q Consensus 257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-----~~vs~t~~l~kA~a~AL~~~P~~Ns~~ 330 (452)
.++++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||++|
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~ 90 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW 90 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 356789999999999999999 89999999999999999999999875 489999999999999999999999999
Q ss_pred eCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeE
Q 012955 331 KDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410 (452)
Q Consensus 331 ~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~ 410 (452)
+ ++.+++++++|||+||++++||++|||+|+|++|+.||+++++++.+|+|+|+|.++|++||||||||+|+||+++|+
T Consensus 91 ~-~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ft 169 (239)
T 3b8k_A 91 M-DTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFS 169 (239)
T ss_dssp C-CCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCC
T ss_pred E-CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEE
Confidence 6 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceEEEEecCceeEEEEc-CCCcEEEEeEEEEEEEe
Q 012955 411 AILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 411 pii~ppq~aiL~vG~i~~~~v~~-~dg~i~~~~~m~ltlt~ 450 (452)
|||||||+|||++|+++++||++ +||+|++|++|+|+|+|
T Consensus 170 piin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~ 210 (239)
T 3b8k_A 170 AIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSC 210 (239)
T ss_dssp CCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECC
T ss_pred CcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEE
Confidence 99999999999999999999995 47899999999999987
No 8
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=8.7e-49 Score=375.61 Aligned_cols=184 Identities=24% Similarity=0.325 Sum_probs=176.9
Q ss_pred CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeCC-
Q 012955 258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDG- 333 (452)
Q Consensus 258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~- 333 (452)
.+++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+. ++|+++|++||++.||++||+||++|+++
T Consensus 6 ~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~ 85 (224)
T 3rqc_A 6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETR 85 (224)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSST
T ss_pred ceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCC
Confidence 46789999999999999999 899999999999999999999999874 78999999999999999999999999743
Q ss_pred CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeec
Q 012955 334 KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL 413 (452)
Q Consensus 334 ~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii 413 (452)
+++++++++|||+||++++||++|||+|+|++|+.||+++++++++|+|+|+|.++|++||||||||+|+||+++|+|||
T Consensus 86 ~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpii 165 (224)
T 3rqc_A 86 RVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPII 165 (224)
T ss_dssp TCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCC
T ss_pred CEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEecc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 414 PPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 414 ~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
||||+|||++|+++++|+ |++|+|||+|
T Consensus 166 n~pq~aIl~vG~~~~~p~---------r~~m~lsls~ 193 (224)
T 3rqc_A 166 NYPEVAILGVHRILEREG---------RKYMYLSLSC 193 (224)
T ss_dssp CTTBSEEEEECCCEEETT---------EEECCEEEEE
T ss_pred CCCCceEEEecccEEECC---------ceEEEEEEEe
Confidence 999999999999999876 8999999997
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.4e-39 Score=370.82 Aligned_cols=178 Identities=21% Similarity=0.284 Sum_probs=145.8
Q ss_pred HhhhcCCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCC---eEEEcCCc
Q 012955 273 NMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGK---SFTYNANI 342 (452)
Q Consensus 273 ~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~---~i~~~~~v 342 (452)
+|.+|+++||||++.+||+++|.++|+++|+ .++|+++||+||++.||++||+||++|++++ .++++++|
T Consensus 1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v 80 (1113)
T 2xt6_A 1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT 80 (1113)
T ss_dssp ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence 5888989999999999999999999998875 3899999999999999999999999997432 79999999
Q ss_pred cEEEEEecC--CC---eEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCc
Q 012955 343 NIAVAVAIN--GG---LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQ 417 (452)
Q Consensus 343 nIgvAV~~~--~G---L~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq 417 (452)
||||||+++ +| |++|||||++++||.+|++++++|++|+|+|+|+++|++||||||||+|+||+++|+|||||||
T Consensus 81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq 160 (1113)
T 2xt6_A 81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ 160 (1113)
T ss_dssp CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence 999999997 56 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCceeEEEEcCC-----CcEEEEeEEEEEEEe
Q 012955 418 GAIMAVGASKPTVVADAD-----GFFGVKSKMLVSLIS 450 (452)
Q Consensus 418 ~aiL~vG~i~~~~v~~~d-----g~i~~~~~m~ltlt~ 450 (452)
+|||++|+++++||++++ |+|+++++|+|||||
T Consensus 161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~ 198 (1113)
T 2xt6_A 161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY 198 (1113)
T ss_dssp SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEE
T ss_pred ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEE
Confidence 999999999999988531 689999999999998
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=2.9e-33 Score=267.03 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=147.1
Q ss_pred cchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCc
Q 012955 263 FTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI 342 (452)
Q Consensus 263 ~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~v 342 (452)
+..--|+---..-.+.++|||+++.+||+++|.++|++. ++|+++|++||++.||++||+||++|+ ++.++++++|
T Consensus 13 ~~~W~R~~~f~~f~~~~~P~~t~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~~~v 88 (219)
T 1q23_A 13 ISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKN---KHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIWDSV 88 (219)
T ss_dssp GGGCTTHHHHHHHTTTTCEEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEESCC
T ss_pred cccCCCHHHHHHhcCCCCcEEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhChHhhEEEE-CCEEEEeccc
Confidence 333333333344467899999999999999999999763 899999999999999999999999997 5689999999
Q ss_pred cEEEEE-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCc-CccCCCcEEEecCCCCCCCCeEeecCCC-c-
Q 012955 343 NIAVAV-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG-Q- 417 (452)
Q Consensus 343 nIgvAV-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~-~d~~ggTftISNlG~~Gv~~f~pii~pp-q- 417 (452)
|||+|| ++++||++|||++ +.+++.+|+++++++++|+|+| +|.+ +|+ ||||||||+|++|.+.+.+.+++| +
T Consensus 89 ~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~~ 166 (219)
T 1q23_A 89 HPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDNF 166 (219)
T ss_dssp EEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTTC
T ss_pred CeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCccc
Confidence 999999 9999999999997 5689999999999999999998 6975 889 999999999998644444443333 2
Q ss_pred -eEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 418 -GAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 418 -~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
++||++|+++++ +| |++|+|+|+|
T Consensus 167 ~~pIi~~G~~~~~-----~~----r~~m~lsls~ 191 (219)
T 1q23_A 167 FAPVFTMGKYYTQ-----GD----KVLMPLAIQV 191 (219)
T ss_dssp CSCEEEECCCEEE-----TT----EEEEEEEEEE
T ss_pred eeEEEecccEEEE-----CC----cEEEEEEEEE
Confidence 599999999876 34 7999999997
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=7.3e-33 Score=263.28 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=146.8
Q ss_pred HHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEE
Q 012955 268 AAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347 (452)
Q Consensus 268 k~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvA 347 (452)
|+---..-.+.++|||+++.+||+++|.++|++ .++|+++|++||++.||++||+||++|+ ++.++++++||||+|
T Consensus 13 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~---~~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~~~v~igiA 88 (213)
T 3cla_A 13 RREHFEFYRHRLPCGFSLTSKIDITTLKKSLDD---SAYKFYPVMIYLIAQAVNQFDELRMAIK-DDELIVWDSVDPQFT 88 (213)
T ss_dssp THHHHHHHHHTSCCEEEEEEEEECHHHHHHHHT---SSCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEESCCEEEEE
T ss_pred cHHHHHHHhCCCCceEEEEEEEEHHHHHHHHHH---hCCCHHHHHHHHHHHHHhhCHHhhEEEE-CCEEEEEeccceeEE
Confidence 333344455678999999999999999999964 4899999999999999999999999997 568999999999999
Q ss_pred E-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCc-CccCCCcEEEecCCCCCCCCeEeecCCC---ceEEE
Q 012955 348 V-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG---QGAIM 421 (452)
Q Consensus 348 V-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~-~d~~ggTftISNlG~~Gv~~f~pii~pp---q~aiL 421 (452)
| ++++||++|||++ +.+++.+|+++++++++|+|+| +|.+ +|++||||||||+||++.+.|+..++.+ ..+|+
T Consensus 89 Vf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi 167 (213)
T 3cla_A 89 VFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPII 167 (213)
T ss_dssp EEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEE
T ss_pred EEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEE
Confidence 9 9999999999987 5699999999999999999996 9988 8899999999999998766664333333 24899
Q ss_pred EecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 422 AVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 422 ~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
++|+++++ +| |++|+|+|+|
T Consensus 168 ~~G~~~~~-----~~----~~~m~lsls~ 187 (213)
T 3cla_A 168 TMAKYQQE-----GD----RLLLPLSVQV 187 (213)
T ss_dssp EEECCEEE-----TT----EEEEEEEEEE
T ss_pred EeeEEEEE-----CC----eEEEEEEEEE
Confidence 99999875 34 7999999997
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=8.9e-32 Score=256.34 Aligned_cols=170 Identities=9% Similarity=0.057 Sum_probs=147.4
Q ss_pred HHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEE
Q 012955 268 AAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347 (452)
Q Consensus 268 k~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvA 347 (452)
|+---..-.+.++|||+++.+||+++|.++|++. ++|+++|++||++.||++||+||++|++++.+++++++|||+|
T Consensus 15 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvA 91 (217)
T 2i9d_A 15 RKENFNFFRHFQNPQLSITSEVECGGARQRAKAA---GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSP 91 (217)
T ss_dssp THHHHHHHTTCSBCEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEE
T ss_pred CHHHHHHHhCCCCceEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEE
Confidence 3333444556889999999999999999999764 8999999999999999999999999973568999999999999
Q ss_pred E-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHc-CCCCcC------ccCCCcEEEecCCCCCCCCeEeecCCC---
Q 012955 348 V-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARS-KQLQPH------EYNSGTFTLSNLGMFGVDRFDAILPPG--- 416 (452)
Q Consensus 348 V-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~-g~l~~~------d~~ggTftISNlG~~Gv~~f~pii~pp--- 416 (452)
| ++++||++||+.. ..+++.+|+++++++++|+|+ |+|.++ |++||||||||+|+++.+.|+..++++
T Consensus 92 Vf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~ 170 (217)
T 2i9d_A 92 IKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGN 170 (217)
T ss_dssp EECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCC
T ss_pred EEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccc
Confidence 9 9999999999975 568999999999999999998 599995 999999999999998766665444444
Q ss_pred ceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955 417 QGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS 450 (452)
Q Consensus 417 q~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~ 450 (452)
..+||++|+++++ +| |++|+|+|+|
T Consensus 171 ~~PIi~~Gk~~~~-----~~----r~~m~lsls~ 195 (217)
T 2i9d_A 171 NYPLLNAGKAIIR-----EG----RLVMPIAMTI 195 (217)
T ss_dssp SSCEEEECCCEEE-----TT----EEEEEEEEEE
T ss_pred eEEEEecceEEEE-----CC----cEEEEEEEEe
Confidence 2589999999875 34 7999999997
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.97 E-value=9.6e-32 Score=257.71 Aligned_cols=167 Identities=33% Similarity=0.540 Sum_probs=38.5
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc-cCCCCeEEEEecc
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES-APVGAAIGILAET 135 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~-v~~G~~l~~i~~~ 135 (452)
++++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+. |.+|++|++|.++
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 457899999999999999999999999999999999999999999999999999999999999997 9999999999754
Q ss_pred hhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCccc
Q 012955 136 EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI 215 (452)
+++............ ..+....+.+.. .+.+...............++++||+|||||+|+||||+.|.|||++|||
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRI 158 (229)
T 1zy8_K 82 GEDWKHVEIPKDVGP-PPPVSKPSEPRP--SPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIF 158 (229)
T ss_dssp ---------------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCB
T ss_pred Ccccccccccccccc-ccccccCCCccc--ccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCce
Confidence 432111000000000 000000000000 00000000000000011236789999999999999999999999999999
Q ss_pred chhhHHHhhcc
Q 012955 216 TPEDVEKAAGI 226 (452)
Q Consensus 216 ~~~DV~~~~~~ 226 (452)
+++||++|++.
T Consensus 159 tk~DV~~~~~~ 169 (229)
T 1zy8_K 159 TKEDALKLVQL 169 (229)
T ss_dssp CHHHHHHHHHH
T ss_pred ehHHHHHHHhh
Confidence 99999999863
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=152.01 Aligned_cols=87 Identities=34% Similarity=0.585 Sum_probs=81.3
Q ss_pred ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEec
Q 012955 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAE 134 (452)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~ 134 (452)
++.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.+
T Consensus 5 p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred ccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 367899999999999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred chhhHHHH
Q 012955 135 TEAEVAQA 142 (452)
Q Consensus 135 ~~~~~~~~ 142 (452)
.+++...+
T Consensus 85 ~~~~~~~~ 92 (108)
T 2dne_A 85 KPEDIEAF 92 (108)
T ss_dssp CHHHHHHH
T ss_pred Cccchhhh
Confidence 77665444
No 15
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.78 E-value=9.7e-19 Score=152.96 Aligned_cols=85 Identities=39% Similarity=0.677 Sum_probs=80.0
Q ss_pred cceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEe
Q 012955 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILA 133 (452)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~ 133 (452)
.++..+|.||+||++|.+|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+ .|.+|++|+.|.
T Consensus 24 ~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 24 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred CCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 899999999998
Q ss_pred cchhhH
Q 012955 134 ETEAEV 139 (452)
Q Consensus 134 ~~~~~~ 139 (452)
+.+++.
T Consensus 104 ~~~~~~ 109 (128)
T 1y8o_B 104 EKEADI 109 (128)
T ss_dssp SSGGGG
T ss_pred cCccch
Confidence 766543
No 16
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.78 E-value=1.1e-18 Score=142.66 Aligned_cols=81 Identities=40% Similarity=0.676 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEecc
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAET 135 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~~ 135 (452)
+..+|.||+||+++.+|+|.+|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.+.
T Consensus 4 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp CEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred cceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999 89999999999865
Q ss_pred hh
Q 012955 136 EA 137 (452)
Q Consensus 136 ~~ 137 (452)
++
T Consensus 84 ~~ 85 (87)
T 3crk_C 84 EA 85 (87)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=145.93 Aligned_cols=81 Identities=43% Similarity=0.730 Sum_probs=77.3
Q ss_pred eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCcc-CCCCeEEEEecc
Q 012955 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA-PVGAAIGILAET 135 (452)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v-~~G~~l~~i~~~ 135 (452)
+.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.+ ..|++|+.|...
T Consensus 6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 6689999999999999999999999999999999999999999999999999999999999999999 999999999765
Q ss_pred hh
Q 012955 136 EA 137 (452)
Q Consensus 136 ~~ 137 (452)
++
T Consensus 86 ~~ 87 (98)
T 2dnc_A 86 GE 87 (98)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.75 E-value=2.1e-18 Score=142.81 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=76.5
Q ss_pred ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+++++|.||+||+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+..|++|+.|...
T Consensus 2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999753
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.71 E-value=2.2e-17 Score=132.05 Aligned_cols=76 Identities=32% Similarity=0.596 Sum_probs=73.8
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
++|.||+||+++.+|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.+..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999864
No 20
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.66 E-value=1.5e-16 Score=126.49 Aligned_cols=75 Identities=31% Similarity=0.546 Sum_probs=73.1
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.+|.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999985
No 21
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.66 E-value=1.6e-16 Score=127.16 Aligned_cols=76 Identities=25% Similarity=0.464 Sum_probs=72.9
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.++|.||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 368999999998 9999999999999999999999999999999999999999999999999999999999999764
No 22
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.65 E-value=4.7e-18 Score=136.47 Aligned_cols=76 Identities=30% Similarity=0.577 Sum_probs=73.4
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.+|.||+||+++.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999998864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.61 E-value=1.4e-15 Score=121.46 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+|.||++|++ + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 47899999996 7 99999999999999999999999999999999999999999999999999999999999754
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.59 E-value=4.6e-16 Score=124.87 Aligned_cols=77 Identities=22% Similarity=0.394 Sum_probs=73.0
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+++|.||++| ++..|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.|...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 3689999999 6889999999999999999999999999999999999999999999999999999999999999653
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.42 E-value=8.7e-15 Score=118.72 Aligned_cols=72 Identities=25% Similarity=0.452 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
++|.+|++ |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 46788977 8999999999999999999999999999999999999999999999999999999999997643
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.40 E-value=9.9e-13 Score=102.55 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=61.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.+
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 499999999999999999999999999999999999999999999999999999999999865
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=109.00 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=61.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+|.+|++++||.|++||.|++||+||+.++|+||++|+|.+++ ++|+.|..|++|+.|.+.+
T Consensus 13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 499999999999999999999999999999999999999999999 9999999999999997643
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.34 E-value=2.3e-13 Score=112.54 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=29.0
Q ss_pred cceeEEEEcCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955 55 QSKIREIFMPALSSTM----TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG 130 (452)
Q Consensus 55 ~~~~~~i~~P~l~~~~----~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~ 130 (452)
.....+|.+|...... ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+.|..|++|+
T Consensus 12 ~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~ 91 (94)
T 2jku_A 12 DLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLV 91 (94)
T ss_dssp ------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC---------------------------------
T ss_pred cccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEE
Confidence 3455688999888764 589999999999999999999999999999999999999999999999999999999998
Q ss_pred EEe
Q 012955 131 ILA 133 (452)
Q Consensus 131 ~i~ 133 (452)
.|+
T Consensus 92 ~ie 94 (94)
T 2jku_A 92 ELE 94 (94)
T ss_dssp ---
T ss_pred EEC
Confidence 873
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=106.99 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=60.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|. +++++|+.|..|++|+.|..
T Consensus 25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 499999999999999999999999999999999999999999 99999999999999999965
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.28 E-value=1.4e-11 Score=96.33 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.|+|.+|++++||.|++||+|++++++|+..+|+||.+|+|.++.+++|+.+..|++|+.|+
T Consensus 13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 39999999999999999999999999999999999999999999999999999999999873
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.27 E-value=1.4e-11 Score=97.36 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=59.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.|+|.+|++++||.|++||+|++++++|+..+|+||++|+|.++.+++|+.+..|++|+.|+
T Consensus 16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 39999999999999999999999999999999999999999999999999999999999873
No 32
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.25 E-value=1.1e-11 Score=98.79 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=58.0
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|.+ |++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 13 G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 13 GTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 77777 59999999999999999999999999999999999999999999999999999873
No 33
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=102.51 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=62.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|.+.+
T Consensus 22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE 86 (99)
T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence 39999999999999999999999999999999999999999999999999999999999997644
No 34
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.21 E-value=7.8e-12 Score=87.58 Aligned_cols=40 Identities=40% Similarity=0.654 Sum_probs=37.5
Q ss_pred cccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955 186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG 225 (452)
Q Consensus 186 ~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~ 225 (452)
+.+||+||+||+++||||+.|.|||++|||+++||++|+.
T Consensus 1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 3579999999999999999999999999999999999864
No 35
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.19 E-value=7.3e-12 Score=94.20 Aligned_cols=43 Identities=37% Similarity=0.556 Sum_probs=39.3
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
.++.+||+||+||+++||||+.|.|||++|||+++||++|++.
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 4688999999999999999999999999999999999999754
No 36
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.18 E-value=3.1e-11 Score=132.35 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=60.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999884
No 37
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.17 E-value=1.4e-11 Score=85.83 Aligned_cols=38 Identities=47% Similarity=0.729 Sum_probs=36.2
Q ss_pred cChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955 188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG 225 (452)
Q Consensus 188 asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~ 225 (452)
+||+||++|+++||||+.|.|||++|||+++||++|++
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 39 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAG 39 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHHC
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHhc
Confidence 69999999999999999999999999999999999863
No 38
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.16 E-value=1.1e-11 Score=86.31 Aligned_cols=38 Identities=39% Similarity=0.504 Sum_probs=35.1
Q ss_pred cChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955 188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG 225 (452)
Q Consensus 188 asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~ 225 (452)
+||+||+||+++||||+.|.|||++|||+++||++|+.
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 39 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 69999999999999999999999999999999998753
No 39
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.11 E-value=1.2e-10 Score=134.63 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=59.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 40
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.10 E-value=3.9e-11 Score=87.34 Aligned_cols=43 Identities=35% Similarity=0.540 Sum_probs=39.3
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
+++.+||++|+||+++||||..|.|||++|||+++||++|+..
T Consensus 5 ~~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~~ 47 (49)
T 1w85_I 5 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 47 (49)
T ss_dssp -CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC
T ss_pred CcccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999753
No 41
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.10 E-value=1.4e-10 Score=133.54 Aligned_cols=63 Identities=16% Similarity=0.401 Sum_probs=60.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
|+|++|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|..|++|+.|+..
T Consensus 1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999653
No 42
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.09 E-value=1e-11 Score=136.12 Aligned_cols=64 Identities=27% Similarity=0.426 Sum_probs=0.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.|+|++|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.+|++|+.|+++
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 4999999999999999999999999999999999999999999999999999999999999653
No 43
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.08 E-value=4.5e-11 Score=87.75 Aligned_cols=42 Identities=38% Similarity=0.620 Sum_probs=38.9
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG 225 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~ 225 (452)
.++.+||++|+||+++||||+.|.|||++|||+++||++|+.
T Consensus 8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~ 49 (51)
T 1bal_A 8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49 (51)
T ss_dssp SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence 356789999999999999999999999999999999998864
No 44
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.99 E-value=1.4e-10 Score=88.97 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=39.9
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
.++.+||+||+||+++||||..|.|||++|||+++||++|+..
T Consensus 8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999764
No 45
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.97 E-value=2.3e-10 Score=87.33 Aligned_cols=42 Identities=43% Similarity=0.588 Sum_probs=39.5
Q ss_pred ccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 185 ~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
++++||++|+||+++||||..|.|||++|||+++||++|+..
T Consensus 4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 467899999999999999999999999999999999999864
No 46
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.97 E-value=4.7e-10 Score=87.62 Aligned_cols=43 Identities=37% Similarity=0.570 Sum_probs=40.0
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (452)
Q Consensus 184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~ 226 (452)
.+++++|+||+||+++||||..|.|||++|||+++||++|+..
T Consensus 14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 3567999999999999999999999999999999999999864
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.81 E-value=3.5e-09 Score=90.15 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=61.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee-----------------------------eEEEcCCCeEEEEEEeCCCCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKAD-----------------------------MDVETFYDGILAAIVVPEGES 122 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~-----------------------------~ev~ap~~G~l~~i~v~~G~~ 122 (452)
.|+|.+|+|++||.|++||+|+++++.++. ..|+||++|+|.++.+++|+.
T Consensus 9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~ 88 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY 88 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence 499999999999999999999999988665 489999999999999999999
Q ss_pred cCCC-CeEEEEecchhh
Q 012955 123 APVG-AAIGILAETEAE 138 (452)
Q Consensus 123 v~~G-~~l~~i~~~~~~ 138 (452)
|..| ++|+.|.+.+.-
T Consensus 89 v~~g~~~l~~i~~~~~~ 105 (116)
T 2k32_A 89 VSASTTELVRVTNLNPI 105 (116)
T ss_dssp ECTTTSCCEEEECSCTH
T ss_pred EcCCCcEEEEEECCCeE
Confidence 9999 999999876543
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.79 E-value=1.3e-09 Score=119.62 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=59.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i 132 (452)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999999999999876
No 49
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.79 E-value=7.6e-09 Score=91.02 Aligned_cols=71 Identities=24% Similarity=0.193 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEE---EeCCCCccC---CCC-eEEE
Q 012955 60 EIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---VVPEGESAP---VGA-AIGI 131 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i---~v~~G~~v~---~G~-~l~~ 131 (452)
.+..|.+|. |+.+.+ ++||.|++||.||+||+||+..+|.||.+|+|.++ +++.|+.|. .|+ .|+.
T Consensus 38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK 111 (136)
T ss_dssp HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence 344565553 555544 99999999999999999999999999999999999 888999997 898 8999
Q ss_pred Eecch
Q 012955 132 LAETE 136 (452)
Q Consensus 132 i~~~~ 136 (452)
|...+
T Consensus 112 i~~~~ 116 (136)
T 1zko_A 112 MEISD 116 (136)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87543
No 50
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.75 E-value=4.4e-09 Score=121.43 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=53.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~ 133 (452)
|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1104 G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp EEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred eEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999885
No 51
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.35 E-value=6.1e-07 Score=78.10 Aligned_cols=71 Identities=30% Similarity=0.288 Sum_probs=55.9
Q ss_pred EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeC---CCCcc---CCCC-eEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP---EGESA---PVGA-AIG 130 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~---~G~~v---~~G~-~l~ 130 (452)
.++..|.+| .|+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.++..+ ..+.+ +.|+ -|+
T Consensus 28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (128)
T 1onl_A 28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF 101 (128)
T ss_dssp CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence 334445555 3555555 99999999999999999999999999999999999754 45566 6777 788
Q ss_pred EEecc
Q 012955 131 ILAET 135 (452)
Q Consensus 131 ~i~~~ 135 (452)
.|...
T Consensus 102 ~i~~~ 106 (128)
T 1onl_A 102 RLKPR 106 (128)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88643
No 52
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.32 E-value=3e-07 Score=80.38 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=55.7
Q ss_pred EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC---Ccc---CCCC-eEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG---ESA---PVGA-AIG 130 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G---~~v---~~G~-~l~ 130 (452)
.++.+|.+| .|+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.++..+.+ +.| +.|+ -|+
T Consensus 28 td~a~~~lG------~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (131)
T 1hpc_A 28 TDHAQDHLG------EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI 101 (131)
T ss_dssp CHHHHHHHC------SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred ehhhcccCC------CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence 334455554 4666666 9999999999999999999999999999999999985554 455 3566 788
Q ss_pred EEecc
Q 012955 131 ILAET 135 (452)
Q Consensus 131 ~i~~~ 135 (452)
.|...
T Consensus 102 ~i~~~ 106 (131)
T 1hpc_A 102 KIKPT 106 (131)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87643
No 53
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.29 E-value=8e-07 Score=77.36 Aligned_cols=71 Identities=23% Similarity=0.134 Sum_probs=55.2
Q ss_pred EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC---CccC---CCC-eEE
Q 012955 59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG---ESAP---VGA-AIG 130 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G---~~v~---~G~-~l~ 130 (452)
.++..|.||. |+.+.+ ++||.|++||.||+||+||+..+|.||.+|+|.++..+.+ +.+. .|+ -|+
T Consensus 29 td~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~ 102 (128)
T 3a7l_A 29 TEHAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF 102 (128)
T ss_dssp CHHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred ehHHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence 3444555553 555555 9999999999999999999999999999999999976543 4454 666 788
Q ss_pred EEecc
Q 012955 131 ILAET 135 (452)
Q Consensus 131 ~i~~~ 135 (452)
.|...
T Consensus 103 ~i~~~ 107 (128)
T 3a7l_A 103 KIKAS 107 (128)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87643
No 54
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.91 E-value=1.4e-05 Score=82.35 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=57.5
Q ss_pred eEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 012955 72 EGKIVSWIK-SEGDVLSKGESVVVVESD------------------------------------------------KADM 102 (452)
Q Consensus 72 eg~I~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~ 102 (452)
.|.|.+++| ++||.|++||+|+++++. ....
T Consensus 129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 208 (413)
T 3ne5_B 129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF 208 (413)
T ss_dssp CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence 399999998 999999999999999942 2356
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.|+||++|+|.++.+++|+.|..|++|+.|.+.
T Consensus 209 ~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 209 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp EEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred EEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 899999999999999999999999999998754
No 55
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.90 E-value=1.3e-05 Score=80.41 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=58.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCce----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------- 100 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------- 100 (452)
|+|.+|+|++||.|++||+|++++....
T Consensus 66 G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l 145 (359)
T 3lnn_A 66 GRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASES 145 (359)
T ss_dssp EEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997532
Q ss_pred ------------------------eeEEEcCCCeEEEEEEeCCCCccCC-CCeEEEEecch
Q 012955 101 ------------------------DMDVETFYDGILAAIVVPEGESAPV-GAAIGILAETE 136 (452)
Q Consensus 101 ------------------------~~ev~ap~~G~l~~i~v~~G~~v~~-G~~l~~i~~~~ 136 (452)
...|+||++|+|.++.+.+|+.+.. |++|+.|.+.+
T Consensus 146 ~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 146 QRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred HHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence 3579999999999999999999998 99999997644
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.89 E-value=6.5e-06 Score=79.68 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=56.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------- 99 (452)
|+|.+|+|++||.|++||+|+++++..
T Consensus 31 G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a 110 (277)
T 2f1m_A 31 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA 110 (277)
T ss_dssp EEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999998642
Q ss_pred ------------------eeeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecch
Q 012955 100 ------------------ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAETE 136 (452)
Q Consensus 100 ------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~~ 136 (452)
-...|+||++|+|..+.+++|+.|..| ++|+.|.+.+
T Consensus 111 ~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 111 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 134899999999999999999999999 6899987643
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.83 E-value=1.5e-05 Score=79.37 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=56.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------- 99 (452)
|+|.+|+|++||.|++||+|++++...
T Consensus 40 G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a 119 (341)
T 3fpp_A 40 GQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNA 119 (341)
T ss_dssp EEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred cEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 999999999999999999999998741
Q ss_pred --------------------------------eeeEEEcCCCeEEEEEEeCCCCccCCCCe---EEEEecch
Q 012955 100 --------------------------------ADMDVETFYDGILAAIVVPEGESAPVGAA---IGILAETE 136 (452)
Q Consensus 100 --------------------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~~---l~~i~~~~ 136 (452)
....|+||++|+|.++.+.+|+.|..|++ |+.|.+.+
T Consensus 120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence 11569999999999999999999999987 88886543
No 58
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.69 E-value=5.3e-05 Score=65.44 Aligned_cols=61 Identities=21% Similarity=0.128 Sum_probs=47.8
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC---cc---CCCC-eEEEEe
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE---SA---PVGA-AIGILA 133 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~---~v---~~G~-~l~~i~ 133 (452)
|.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.....+ .+ +.|+ =|+.|.
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 56666655 79999999999999999999999999999999998654433 22 3454 366654
No 59
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.59 E-value=3.2e-05 Score=78.32 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=56.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 100 (452)
.|+|.+|+|++||.|++||+|++++....
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999986321
Q ss_pred ------eeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecc
Q 012955 101 ------DMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET 135 (452)
Q Consensus 101 ------~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~ 135 (452)
...|+||++|+|.++.+++|+.|..| ++|+.|.+.
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 25899999999999999999999995 899988653
No 60
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.54 E-value=0.00012 Score=64.61 Aligned_cols=76 Identities=26% Similarity=0.229 Sum_probs=53.2
Q ss_pred eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc------cCCCC-eE
Q 012955 58 IREIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES------APVGA-AI 129 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~------v~~G~-~l 129 (452)
...|-+-+.... .-|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.-...+. -+.|+ =|
T Consensus 40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl 118 (143)
T 3mxu_A 40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWL 118 (143)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCC
T ss_pred EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeE
Confidence 444544443221 1355665544 899999999999999999999999999999999987544332 14443 56
Q ss_pred EEEec
Q 012955 130 GILAE 134 (452)
Q Consensus 130 ~~i~~ 134 (452)
+.|..
T Consensus 119 ~ki~~ 123 (143)
T 3mxu_A 119 WKMTV 123 (143)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 61
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.50 E-value=0.00011 Score=64.28 Aligned_cols=44 Identities=30% Similarity=0.293 Sum_probs=38.7
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 45555544 899999999999999999999999999999998874
No 62
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.19 E-value=0.00052 Score=61.17 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (452)
Q Consensus 73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~ 116 (452)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|.|.++.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 45555443 799999999999999999999999999999998875
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.06 E-value=2.4e-05 Score=78.60 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=54.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 100 (452)
.|+|.+|+|++||.|++||+|++++....
T Consensus 40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 119 (369)
T 4dk0_A 40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT 119 (369)
T ss_dssp CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 39999999999999999999999986420
Q ss_pred ----------------------------------eeEEEcCCCeEEEEEEeCCCCccCCCCe---EEEEec
Q 012955 101 ----------------------------------DMDVETFYDGILAAIVVPEGESAPVGAA---IGILAE 134 (452)
Q Consensus 101 ----------------------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~---l~~i~~ 134 (452)
...|+||++|+|.++.+++|+.|..|++ |+.|.+
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence 1359999999999999999999999998 666644
No 64
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.68 E-value=0.0034 Score=62.77 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=50.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 75 IVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+++.+++.||.|++||+|++|.. .....+|+||++|+|... ...-.|..|+.|+.|...
T Consensus 267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 77889999999999999999997 356789999999999554 446788899999998653
No 65
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.55 E-value=0.0046 Score=62.29 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=52.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
| +++..++.||.|++||+|+.|+. .++..+|.||++|+|..+ .....|..|+.|+.|...
T Consensus 276 G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 276 G-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED 339 (354)
T ss_dssp E-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred E-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence 5 78888999999999999999997 588899999999999644 578889999999998643
No 66
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.41 E-value=0.0064 Score=61.65 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe------CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVES------DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~vet------dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
=|++..++.||.|++||+|++|.. .....+|.||.+|+|. .....-.|..|+.|+.|..
T Consensus 299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSSEECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCCccCCCCEEEEEee
Confidence 366799999999999999999997 5678899999999994 5566688999999998864
No 67
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.33 E-value=0.0014 Score=54.00 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 89 GESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 89 gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
|..+|.++.++-...|.||..|+|.++++++|+.|..|++|+.++.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 4556888888888899999999999999999999999999999974
No 68
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.74 E-value=0.009 Score=45.38 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=30.4
Q ss_pred EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 378999999999999999999999999999764
No 69
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.64 E-value=0.01 Score=45.72 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=32.0
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 45789999999999999999999999999999763
No 70
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.62 E-value=0.013 Score=44.53 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=31.3
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4689999999999999999999999999999753
No 71
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.23 E-value=0.016 Score=52.02 Aligned_cols=64 Identities=27% Similarity=0.436 Sum_probs=54.7
Q ss_pred EEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------
Q 012955 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------- 115 (452)
Q Consensus 60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------- 115 (452)
.|.-| + .|+|+.+. +..|.+-. |+.++...++ ..+.||++|+|..+
T Consensus 14 ~i~aP-~-----~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (161)
T 1f3z_A 14 EIIAP-L-----SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH 83 (161)
T ss_dssp EEECS-S-----CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEec-C-----CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEE
Confidence 46666 3 39999976 78898776 8999988876 47899999999988
Q ss_pred ---------------EeCCCCccCCCCeEEEEe
Q 012955 116 ---------------VVPEGESAPVGAAIGILA 133 (452)
Q Consensus 116 ---------------~v~~G~~v~~G~~l~~i~ 133 (452)
++++||.|..|++|+.+.
T Consensus 84 iGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp CSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred ECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999994
No 72
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.12 E-value=0.019 Score=47.96 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=32.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+.|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999865
No 73
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=94.88 E-value=0.045 Score=54.38 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=49.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
+-+....++.||.|++||+|+++-. .+...+|.||++|+|.- ....-.|..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~--~~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA--IRSAMYVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE--EECSEEECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE--EeCCCeeCCCCEEEEEee
Confidence 3456688999999999999999965 56788999999999944 445667888999988854
No 74
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=94.68 E-value=0.023 Score=50.65 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=54.4
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEE--------------------
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAA-------------------- 114 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~-------------------- 114 (452)
..|.-| + .|+|+.+. ++.|.+-. |+.++...++ ..+.||++|+|..
T Consensus 8 ~~i~aP-~-----~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 8 LKVLAP-C-----DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEEECS-S-----SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred CEEEec-C-----CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 346666 3 39999975 88998776 8999988876 5899999999987
Q ss_pred ---------------EEeCCCCccCCCCeEEEEe
Q 012955 115 ---------------IVVPEGESAPVGAAIGILA 133 (452)
Q Consensus 115 ---------------i~v~~G~~v~~G~~l~~i~ 133 (452)
+++++||.|..|++|+.+.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999995
No 75
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=94.52 E-value=0.019 Score=45.55 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=30.9
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
..|.||.+|+|.++++++|+.|..|++|+.++.
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence 469999999999999999999999999999974
No 76
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.41 E-value=0.022 Score=51.23 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=50.5
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------------------
Q 012955 72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------------------- 115 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------------------- 115 (452)
.|+|+.+ .++.|.+-. |+.++...+ ...++||++|+|..+
T Consensus 20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g 95 (162)
T 1ax3_A 20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG 95 (162)
T ss_dssp SEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred ceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence 4999997 788888766 899998876 347899999999988
Q ss_pred ---EeCCCCccCCCCeEEEEe
Q 012955 116 ---VVPEGESAPVGAAIGILA 133 (452)
Q Consensus 116 ---~v~~G~~v~~G~~l~~i~ 133 (452)
++++||.|..|++|+.+.
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 96 FTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EEESCCCCSEECSEEEEEEEC
T ss_pred cEEEEeCCCEEcCCCEEEEEC
Confidence 889999999999999995
No 77
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=94.24 E-value=0.066 Score=51.18 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=40.7
Q ss_pred CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 81 ~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHH
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHH
Confidence 334444444556677765 4678999999999999999999999999999997654
No 78
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=93.53 E-value=0.038 Score=44.73 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=31.5
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 45689999999999999999999999999999764
No 79
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=93.38 E-value=0.047 Score=44.58 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.7
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.++..|+|.++++++|+.|..|++|+.|+..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence 45688999999999999999999999999999753
No 80
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=93.08 E-value=0.059 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred eEEEcCCCeEEEEE-------EeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAI-------VVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i-------~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|.||..|+|.++ ++++|+.|..|++|+.++..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence 46899999999998 89999999999999999763
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=92.99 E-value=0.088 Score=48.44 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.6
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAA 114 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~ 114 (452)
.++|++|+.|++||.||+-. .|-+..+|+|..
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 57999999999999999754 777888887743
No 82
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=92.61 E-value=0.12 Score=46.18 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=40.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEEE
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV 116 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i~ 116 (452)
||.-+-..+.+||.|.+||.|+-|.|.|-++- ++||++|+|.-+.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 57777888999999999999999999998765 9999999997665
No 83
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=92.59 E-value=0.069 Score=52.99 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCCCeecCCCeEEEEEeC-ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 81 SEGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 81 ~~Gd~V~~gd~l~~vetd-K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus 36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 333333344556677765 67889999999999999999999999999999998654
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=92.46 E-value=0.11 Score=51.14 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=43.7
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
.++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~ 66 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 66 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHH
Confidence 34555554444556677765 4678999999999999999999999999999997654
No 85
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=91.20 E-value=0.19 Score=38.54 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=24.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vet 97 (452)
.|+|.++++++||.|..|++|+.|++
T Consensus 52 ~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 52 RGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 49999999999999999999999874
No 86
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=91.07 E-value=0.2 Score=38.68 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=25.8
Q ss_pred CeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 109 DGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 109 ~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+|+|.++++++|+.|..|++|+.++...
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence 8999999999999999999999997643
No 87
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=90.87 E-value=0.18 Score=39.09 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=28.0
Q ss_pred EcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 105 ETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 105 ~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
-++..|.|.++++++|+.|..|++|+.++..
T Consensus 11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 11 GGHENVDIIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp SSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred CCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence 3568999999999999999999999999754
No 88
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=90.30 E-value=0.23 Score=49.78 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=38.4
Q ss_pred CeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 90 ESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 90 d~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus 33 ~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 33 ELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp EEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred EEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 344566654 3578999999999999999999999999999997654
No 89
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=90.28 E-value=0.29 Score=39.36 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|+|.++++++||.|..|++|+.++..
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcC
Confidence 35899999999999999999999999753
No 90
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=90.20 E-value=0.22 Score=39.40 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|+|.++++++|+.|..|++|+.++..
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECC
Confidence 35899999999999999999999999754
No 91
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=90.17 E-value=0.12 Score=40.04 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=27.0
Q ss_pred cCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 106 TFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 106 ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
++..|+|.++++++|+.|..|++|+.++..
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECS
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 456999999999999999999999999753
No 92
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=90.15 E-value=0.26 Score=50.32 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCCeecCCCeEEEEEeC-ceeeEEEcCCCeEEEEEEe-CCCCccCCCCeEEEEecch
Q 012955 82 EGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVV-PEGESAPVGAAIGILAETE 136 (452)
Q Consensus 82 ~Gd~V~~gd~l~~vetd-K~~~ev~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~~~ 136 (452)
.|+.-..=...+.|+.| .-...|.++.+|+|.++++ ++||.|..|++|+.|+..+
T Consensus 101 ~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~ 157 (413)
T 3ne5_B 101 RGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 157 (413)
T ss_dssp EECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred EeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence 33333333445566643 4568899999999999998 9999999999999998543
No 93
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=90.06 E-value=0.02 Score=45.30 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=30.4
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
++|.+|.-|+|.++++++|+.|..|++|+.++..
T Consensus 3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCC
T ss_pred cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEcc
Confidence 4677888899999999999999999999999754
No 94
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.96 E-value=0.24 Score=40.37 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.8
Q ss_pred CCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 108 YDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|+|.++++++||.|..|++|+.++..
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECS
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 4799999999999999999999999754
No 95
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=89.62 E-value=0.3 Score=49.05 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.5
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~ 113 (452)
.++|++||.|++||.||+-. .|-+..+|+|.
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 68999999999999999964 66677777664
No 96
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=89.41 E-value=0.27 Score=40.82 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 108 YDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|+|.++++++||.|..|++|++|+..
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEECS
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEEcC
Confidence 5799999999999999999999999754
No 97
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=89.38 E-value=0.38 Score=44.14 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=39.1
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCcc
Q 012955 77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA 123 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v 123 (452)
.++|++||.|++||.||+. |..+..|-+..+|+|.-..+.+|.++
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 6799999999999999977 89999999999999976666666543
No 98
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=87.14 E-value=0.62 Score=39.97 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=26.1
Q ss_pred CCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 108 YDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..|+|.++++++||.|..|++|++|+...
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K 68 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence 57999999999999999999999997543
No 99
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=87.14 E-value=0.38 Score=37.05 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
..+|.-| ..|+|.++++++||.|..|++|+.|+..
T Consensus 41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 3566666 3489999999999999999999999753
No 100
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=86.92 E-value=0.16 Score=50.37 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=44.1
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 80 v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence 4445554555556677744 4668999999999999999999999999999997654
No 101
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.07 E-value=0.16 Score=39.51 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=25.8
Q ss_pred CCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 107 FYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
...|+|.++++++||.|..|++|+.++.
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 41 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEc
Confidence 4689999999999999999999999965
No 102
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=84.29 E-value=0.33 Score=44.60 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=34.1
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEE--------------------------E--EeCCCCccCCCCeEEE
Q 012955 80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAA--------------------------I--VVPEGESAPVGAAIGI 131 (452)
Q Consensus 80 v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~--------------------------i--~v~~G~~v~~G~~l~~ 131 (452)
|++|++|+.||+|+ - ...|-|..+|+|.- + +|++||.|..|+.|+.
T Consensus 85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 89999999999988 2 23345566665531 2 7889999999998874
No 103
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=83.57 E-value=0.88 Score=49.57 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=32.0
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
...|.||..|+|.++++++||.|..|++|++++..
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 646 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM 646 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 45699999999999999999999999999999753
No 104
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=83.10 E-value=1.8 Score=39.33 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=50.6
Q ss_pred EEEEcCCCCCCCceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEEcCCCeEEEEE-------------------
Q 012955 59 REIFMPALSSTMTEGKIVSWIKSEGDVLS----KGESVVVVESDKADMDVETFYDGILAAI------------------- 115 (452)
Q Consensus 59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~----~gd~l~~vetdK~~~ev~ap~~G~l~~i------------------- 115 (452)
..|.-| + .|+++.+. ++-|.|= -||-++..=++- .|-||++|+|..+
T Consensus 35 ~~i~aP-v-----~G~vi~L~-eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLI 104 (183)
T 3our_B 35 IEIIAP-L-----SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELFV 104 (183)
T ss_dssp EEEECS-S-----CEEEEEGG-GSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEee-c-----ceEEEEch-hCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEEE
Confidence 456666 3 38888654 6667652 288888776654 7889999999887
Q ss_pred ----------------EeCCCCccCCCCeEEEEec
Q 012955 116 ----------------VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ----------------~v~~G~~v~~G~~l~~i~~ 134 (452)
++++||.|..|++|+.+.-
T Consensus 105 HIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 105 HFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred EecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence 7899999999999999953
No 105
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=77.43 E-value=1.5 Score=48.03 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|.||..|+|.++++++||.|..|++|++++..
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEam 683 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAM 683 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESS
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecc
Confidence 5699999999999999999999999999999753
No 106
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=77.07 E-value=1.8 Score=49.99 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=31.8
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..|.||..|+|.+++|++||.|..|++|+.++..
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 5799999999999999999999999999999754
No 107
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=76.67 E-value=1.8 Score=50.28 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
..|.||..|+|.++++++||.|..|++|++|+...
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence 46999999999999999999999999999997543
No 108
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=76.08 E-value=1.9 Score=50.04 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=30.7
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEE
Q 012955 77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAA 114 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~ 114 (452)
.++|++||.|++||.||+. |--+..|-+..+|+|.-
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f 1037 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRF 1037 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEE
Confidence 5789999999999999988 67778888888887753
No 109
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=74.30 E-value=2.3 Score=42.34 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=40.8
Q ss_pred EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 78 WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 78 w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
-.++.|+.|++||+|+++- | -+|.+|++|.+. ... .-.|..|+.++.+..
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i--~~p-~p~V~~G~~~~~i~~ 328 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAI--VFP-NRHVAIGQRAALMVC 328 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEE--ESC-CTTCCTTSEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEE--Eec-CCCCCCCcEEEEEEE
Confidence 3468999999999999994 4 788999999873 344 788999998888754
No 110
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=71.03 E-value=0.85 Score=49.66 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=0.0
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
-.|.||..|+|.++++++||.|..|++|++|+..
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 636 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAM 636 (675)
T ss_dssp ----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 4689999999999999999999999999999753
No 111
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=70.79 E-value=3.1 Score=48.08 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=28.3
Q ss_pred eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
..|.||..|+|.++++++||.|..|++|+.++.
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence 579999999999999999999999999999975
No 112
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=68.34 E-value=2.8 Score=38.10 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCC-c-eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 59 REIFMPALSSTM-T-EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 59 ~~i~~P~l~~~~-~-eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.+|.+- +|-+- + +|+--+++|++||+|++||+|+++.-++
T Consensus 100 ~EvLIH-IGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 100 VELFVH-FGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp CEEEEE-CSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CEEEEE-ecccccccCCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 455554 44332 1 5777899999999999999999997543
No 113
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=65.49 E-value=1.3 Score=41.74 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred cCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955 106 TFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 106 ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+-..|.|.+|++++||.|..|++|++|+...
T Consensus 14 sm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK 44 (229)
T 1zy8_K 14 TMEEGNIVKWLKKEGEAVSAGDALCEIETDK 44 (229)
T ss_dssp -------------------------------
T ss_pred CCCcEEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 3468999999999999999999999997543
No 114
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.86 E-value=8 Score=39.63 Aligned_cols=47 Identities=11% Similarity=0.286 Sum_probs=37.1
Q ss_pred EEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecchhhHHHH
Q 012955 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEAEVAQA 142 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~~~~~~~ 142 (452)
+...+ ..+|.|+.+|+|.+| +.+.||.|..|++|+.|....+..+.+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~~~a 399 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRRGLEEA 399 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSSSHHHH
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCccHHHH
Confidence 34567 889999999999877 578899999999999998654444433
No 115
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=62.60 E-value=6.3 Score=39.52 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=29.5
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
..-|+||.+|.+ ...++.|+.|..|++|+.|.+
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEc
Confidence 445899999999 478999999999999999987
No 116
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=62.37 E-value=1.6 Score=44.89 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
..|+|.++++++||.|..||+|++|+.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998654
No 117
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=62.06 E-value=4.4 Score=35.76 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=41.4
Q ss_pred EEEEcCCCCCCC--ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------e-eEEEcCCCeEEEEEEeCCCCccCCCC
Q 012955 59 REIFMPALSSTM--TEGKIVSWIKSEGDVLSKGESVVVVESDKA--------D-MDVETFYDGILAAIVVPEGESAPVGA 127 (452)
Q Consensus 59 ~~i~~P~l~~~~--~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~--------~-~ev~ap~~G~l~~i~v~~G~~v~~G~ 127 (452)
.++.+ .+|-+. -+|+=.+.+|++||+|++||+|+++.-++. + +-|.- .+ +..+....+..+..|+
T Consensus 73 ~evLi-HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~ 148 (154)
T 2gpr_A 73 VEILL-HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGD 148 (154)
T ss_dssp CEEEE-ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTC
T ss_pred CEEEE-EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCC
Confidence 34555 455332 256667789999999999999999975432 1 11222 11 1122233355677788
Q ss_pred eEEEE
Q 012955 128 AIGIL 132 (452)
Q Consensus 128 ~l~~i 132 (452)
.|..+
T Consensus 149 ~~~~~ 153 (154)
T 2gpr_A 149 VVAIL 153 (154)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77655
No 118
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=61.80 E-value=8.4 Score=39.58 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=37.3
Q ss_pred EEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecchhhHH
Q 012955 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEAEVA 140 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~~~~~ 140 (452)
+...|...+|.|+.+|+|.+| +.+.||.|..|++|+.|....+..+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~~ 405 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPDVL 405 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSSCCH
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCccHH
Confidence 345778899999999999887 5788999999999999985544433
No 119
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=60.99 E-value=9.1 Score=39.36 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=33.4
Q ss_pred eCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEec
Q 012955 97 SDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 97 tdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~ 134 (452)
..+...+|.|+.+|+|.+| +.+.||.|..|++|+.|..
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~~ 402 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHS 402 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEeC
Confidence 4577899999999999988 5678999999999999983
No 120
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=58.87 E-value=6.6 Score=38.04 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|++++|+.|++||+|++|+
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEE
Confidence 44789999999999999988887
No 121
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=58.14 E-value=10 Score=38.98 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=36.2
Q ss_pred EEeCceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecchh
Q 012955 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEA 137 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~~ 137 (452)
+...|...+|.|+.+|+|..| +.+.||.|..|++|+.|....+
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 345677889999999999887 6788999999999999986544
No 122
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=57.89 E-value=5.7 Score=35.30 Aligned_cols=27 Identities=22% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
+|+=.+.+|++||+|++||+|+++.-+
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 92 KGEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred CCCccEEEEeCcCEECCCCEEEEECHH
Confidence 455566799999999999999999754
No 123
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=57.32 E-value=8 Score=38.10 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=29.3
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..-|+||.+|.+ .-.++.||.|+.|++|+.|.+.
T Consensus 257 ~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEE-EESSCTTCEECTTCEEEEEECS
T ss_pred cEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEcC
Confidence 445899999988 4579999999999999999874
No 124
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=56.93 E-value=4.3 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=32.8
Q ss_pred cCCCCeecCCCeEE-------------EEEeCceeeEEEcCCCeEEEEE----------EeCCCCccCCCCeEEE
Q 012955 80 KSEGDVLSKGESVV-------------VVESDKADMDVETFYDGILAAI----------VVPEGESAPVGAAIGI 131 (452)
Q Consensus 80 v~~Gd~V~~gd~l~-------------~vetdK~~~ev~ap~~G~l~~i----------~v~~G~~v~~G~~l~~ 131 (452)
|++|+.|+.||+|+ ...-+|-.+-|+ +.+|...+. .+++||.|..|+.|+.
T Consensus 125 v~~g~~v~~G~vlak~~aiiaeidG~V~fg~~kr~i~i~-~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~d 198 (352)
T 2xhc_A 125 LRVGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVVQ-TPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 198 (352)
T ss_dssp CCTTCEECTTCBSBSSSSCBCCSCEEEEEEEEEEEEEEE-CTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEccCcEEecCceEEeccceEEEECCcEEEEEEE-CCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCccc
Confidence 89999999999776 111123344455 345533222 3678889999998874
No 125
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=56.76 E-value=6.3 Score=38.25 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++||.|++||+|++|+
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVR 94 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEE
Confidence 3778999999999999988887
No 126
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=56.29 E-value=6.5 Score=38.21 Aligned_cols=21 Identities=10% Similarity=0.484 Sum_probs=18.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 012955 76 VSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~ve 96 (452)
++|++++|+.|++||+|++++
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 589999999999999999887
No 127
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=55.88 E-value=5.9 Score=38.46 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=18.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++||.|++||+|++|+
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEE
Confidence 3678899999999999888887
No 128
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=55.71 E-value=7 Score=38.19 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 012955 75 IVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 75 I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
-++|++++|+.|++||+|++|+
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEE
Confidence 3589999999999999998887
No 129
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=54.93 E-value=8.5 Score=36.94 Aligned_cols=21 Identities=0% Similarity=0.085 Sum_probs=15.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 012955 76 VSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~ve 96 (452)
++|.+++|+.|.+||+|++|+
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 567777888887777777776
No 130
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=53.53 E-value=7.6 Score=37.91 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=17.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 012955 76 VSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~ve 96 (452)
++|++++|+.|.+||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 578888888888888888876
No 131
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=53.05 E-value=5.4 Score=35.49 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
+|+=.+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 5566677999999999999999997543
No 132
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=52.28 E-value=8.2 Score=38.09 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
+--++|++++|+.|.+||+|++|+
T Consensus 107 ~~~v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 107 QVSIEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp CCEEEESSCTTCEECTTCEEEEEE
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 344689999999999999998887
No 133
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=51.22 E-value=8.7 Score=37.42 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 012955 74 KIVSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 74 ~I~~w~v~~Gd~V~~gd~l~~ve 96 (452)
--++|.+++|+.|..||+|++|+
T Consensus 85 ~~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 85 VRLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp SEEEESCCTTCEECTTCEEEEEE
T ss_pred eEEEEEcCCCCEecCCCEEEEEE
Confidence 34789999999999999999887
No 134
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=46.57 E-value=10 Score=36.97 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=15.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 012955 76 VSWIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~gd~l~~ve 96 (452)
++|.+++|+.|..||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 567777777777777777766
No 135
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=45.20 E-value=11 Score=38.74 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
-++.+.=+.++++.||.|++||+|++|=.++
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCCh
Confidence 3456677899999999999999999987443
No 136
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=44.48 E-value=8.9 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=9.1
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 012955 78 WIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 78 w~v~~Gd~V~~gd~l~~ve 96 (452)
+.|++||.|++||+|..+-
T Consensus 85 i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCCCTTCEECTTCEEEEEC
T ss_pred cccCCCCEEcCCCEEEeec
Confidence 3444555555555554443
No 137
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.15 E-value=16 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.++.+.=+.++++.||+|++||+|+.|=+++
T Consensus 363 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 363 PIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 3555666899999999999999999997664
No 138
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=41.90 E-value=27 Score=36.27 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEeCceeeEEEcCCCeEEEEE-----------------------------EeCCCCccCCCCeEEEEecch
Q 012955 95 VESDKADMDVETFYDGILAAI-----------------------------VVPEGESAPVGAAIGILAETE 136 (452)
Q Consensus 95 vetdK~~~ev~ap~~G~l~~i-----------------------------~v~~G~~v~~G~~l~~i~~~~ 136 (452)
+-..|...+|.|+.+|+|..| +.+.||.|..|++|+.|....
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 445677889999999999554 578899999999999997543
No 139
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=41.84 E-value=16 Score=37.46 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.++.+.=+.++++.||+|++||+|+.|=+++
T Consensus 371 ~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 371 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 3555666899999999999999999998764
No 140
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=41.32 E-value=24 Score=34.83 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=30.2
Q ss_pred ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 99 KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 99 K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+-..-++|+.+|.+ +..++.|+.|+.|++|+.+.+.
T Consensus 265 ~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 265 EADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp CGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred CCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 44566899999966 6678999999999999999863
No 141
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.59 E-value=26 Score=20.94 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHcC
Q 012955 366 DLYLLSQKWKELVEKARSK 384 (452)
Q Consensus 366 sl~eia~~i~~l~~kar~g 384 (452)
-+.++++.++.|.+|.|+|
T Consensus 9 eledlqerlrklrkklrsg 27 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 4677888888888888765
No 142
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=39.79 E-value=19 Score=37.40 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
++.+.=+.++++.||+|++||+|+.|=+++
T Consensus 407 id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 407 LRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred cCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 344555899999999999999999997654
No 143
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=37.26 E-value=33 Score=30.81 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=40.9
Q ss_pred eeEEEEcCC--CC---C---CCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCe
Q 012955 57 KIREIFMPA--LS---S---TMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAA 128 (452)
Q Consensus 57 ~~~~i~~P~--l~---~---~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~ 128 (452)
..++|..|. ++ . ....|+|+..- | -.+.|+.+.-...+-+ -|.++.|++||.|..|++
T Consensus 33 ~GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~----HL~~i~V~~G~~V~~Gq~ 98 (182)
T 3it5_A 33 SSFDASYDWPRWGSATYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYY----HMDQIQVSNGQQVSADTK 98 (182)
T ss_dssp CEEEEESSCCCTTSCCCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEE----SEESCCCCTTCEECTTCE
T ss_pred ecEEecCCCCCCCCCCCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEE----cCCccccCCCCEEcCCCE
Confidence 567888872 11 1 14578887754 2 2445555443232222 234677999999999999
Q ss_pred EEEEecc
Q 012955 129 IGILAET 135 (452)
Q Consensus 129 l~~i~~~ 135 (452)
|+.+...
T Consensus 99 IG~vG~t 105 (182)
T 3it5_A 99 LGVYAGN 105 (182)
T ss_dssp EEEECSS
T ss_pred EEeecCc
Confidence 9999763
No 144
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=33.83 E-value=19 Score=34.79 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=8.6
Q ss_pred EeCCCCccCCCCeEEEEe
Q 012955 116 VVPEGESAPVGAAIGILA 133 (452)
Q Consensus 116 ~v~~G~~v~~G~~l~~i~ 133 (452)
.|++||.|..|+.|+.+.
T Consensus 233 ~V~~G~~V~~Gq~IG~vG 250 (282)
T 2hsi_A 233 DVKLGQQVPRGGVLGKVG 250 (282)
T ss_dssp CSCTTCEECTTCEEEECC
T ss_pred ccCCcCEECCCCEEEEEC
Confidence 344455555555555443
No 145
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=33.55 E-value=18 Score=34.15 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=18.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955 73 GKIVSWIKSEGDVLSKGESVVVVESD 98 (452)
Q Consensus 73 g~I~~w~v~~Gd~V~~gd~l~~vetd 98 (452)
+-+.++.|++||.|++||+|+.+-..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 44456677888888888888877643
No 146
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=33.43 E-value=19 Score=34.94 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=14.4
Q ss_pred EEeCCCCccCCCCeEEEEecc
Q 012955 115 IVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 115 i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+.|++|+.|..|++|+.+...
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 456777777777777776543
No 147
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=33.30 E-value=19 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.1
Q ss_pred EEEEcCCCCeecCC------CeEEEEE
Q 012955 76 VSWIKSEGDVLSKG------ESVVVVE 96 (452)
Q Consensus 76 ~~w~v~~Gd~V~~g------d~l~~ve 96 (452)
++|.+++|+.|..| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 56777777777777 7766665
No 148
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=32.68 E-value=17 Score=37.46 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=26.2
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955 69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (452)
Q Consensus 69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK 99 (452)
.++.+.=+.++++.||+|++||+|+.|=+++
T Consensus 376 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 376 TIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 3555666899999999999999999998764
No 149
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=31.77 E-value=75 Score=22.39 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=31.9
Q ss_pred CccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcc
Q 012955 279 SVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNA 328 (452)
Q Consensus 279 ~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns 328 (452)
...+|++- ++-+--.++...-+..+.|++.++..++..+|.+.-.+++
T Consensus 6 ~~~~~~lR--lp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~~~r~~~ 53 (53)
T 1baz_A 6 KMPQVNLR--WPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA 53 (53)
T ss_dssp CSCEEEEE--CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSCC
T ss_pred cCCeeEEE--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccccCC
Confidence 34556554 4443333444444456999999999999999988766553
No 150
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=30.67 E-value=43 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.9
Q ss_pred EEcCCCeEEEEEEe-CCCCccCCCCeEEEEecc
Q 012955 104 VETFYDGILAAIVV-PEGESAPVGAAIGILAET 135 (452)
Q Consensus 104 v~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~~ 135 (452)
+.+|.-|.|..+.+ ++|+.|..|++|+.|+..
T Consensus 39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~ 71 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESV 71 (136)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEES
T ss_pred hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEc
Confidence 45566677777776 999999999999999743
No 151
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=30.29 E-value=32 Score=30.58 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred eecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 85 VLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 85 ~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
.+++|+.|+.++ .+|+-.-+.+.+|+.|..|+.|+.+...
T Consensus 95 ~lkkGt~L~lvp-----------aeG~~V~~i~~~G~rV~kgd~lA~i~T~ 134 (169)
T 3d4r_A 95 YLKAGTKLISVP-----------AEGYKVYPIMDFGFRVLKGYRLATLESK 134 (169)
T ss_dssp EECTTCBCEEEE-----------ECSSEEEECCCCSEEECTTCEEEEEECT
T ss_pred EEcCCCEEEEEE-----------eCceEEEEEcCcCcEeccCCeEEEEEec
Confidence 355666777765 4677777889999999999999999654
No 152
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=29.92 E-value=41 Score=31.72 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 110 GILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 110 G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
+.|.++.|+.|+.|..|++|+.+...
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 34557789999999999999999765
No 153
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=28.05 E-value=26 Score=33.20 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=8.6
Q ss_pred EcCCCCeecCCCeEEEEE
Q 012955 79 IKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~ve 96 (452)
.|++||.|++||+|+.+-
T Consensus 183 ~V~~G~~V~~Gq~IG~vG 200 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMG 200 (252)
T ss_dssp SCCTTCEECTTCEEEECB
T ss_pred cCCCCCEECCCCEEEEEC
Confidence 444444444444444443
No 154
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=27.74 E-value=2.8e+02 Score=26.52 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=55.6
Q ss_pred EEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecC---------C---
Q 012955 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAIN---------G--- 352 (452)
Q Consensus 285 ~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~---------~--- 352 (452)
....++.+...++++.-++.++|++.++.-|.+.+|.++ .+.+. +++-+|+.++.- .
T Consensus 214 ~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~l~r~-----~~~~~------~~v~~g~~~~~R~~~~~~~~~~~~~ 282 (422)
T 1q9j_A 214 TRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQL-----RNTPH------VPIPYVYPVDLRFVLAPPVAPTEAT 282 (422)
T ss_dssp EEECCCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH-----HTCSS------CCEEEEEEEETTTTSSSCCCTTTBS
T ss_pred eEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-----ccCCC------ceEEEeeeeecccccCCCCChhhhh
Confidence 344566666677777777779999999999999999976 11111 234455555431 1
Q ss_pred ---CeEeeeecCCCCCCHHHHHHHHHHHHHHHHc
Q 012955 353 ---GLITPVLQDADKLDLYLLSQKWKELVEKARS 383 (452)
Q Consensus 353 ---GL~vPVI~~a~~~sl~eia~~i~~l~~kar~ 383 (452)
|.++-.+.--...++.++.+++++-...+..
T Consensus 283 ~~vG~f~n~lp~~~~~~~~~~l~~v~~~~~~~~~ 316 (422)
T 1q9j_A 283 NLLGAASYLAEIGPNTDIVDLASDIVATLRADLA 316 (422)
T ss_dssp CCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeeeeccCCCCHHHHHHHHHHHHHHHHh
Confidence 3333333323356899999888877666544
No 155
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=27.36 E-value=7.3 Score=30.82 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.7
Q ss_pred EEcCCCCeecCCCeEE
Q 012955 78 WIKSEGDVLSKGESVV 93 (452)
Q Consensus 78 w~v~~Gd~V~~gd~l~ 93 (452)
++|++||.|++||.|.
T Consensus 67 l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 67 LNVFEGERVERGDVIS 82 (84)
T ss_dssp CSSCTTEEECBSCSSB
T ss_pred eEeCCCCEECCCCCcc
Confidence 3699999999999875
No 156
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=26.66 E-value=38 Score=29.97 Aligned_cols=33 Identities=6% Similarity=0.326 Sum_probs=25.8
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCcccchhhHHHh
Q 012955 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (452)
Q Consensus 187 ~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~ 223 (452)
...|.+++.++++|||++.-.. -.|+.+|++.+
T Consensus 67 ~~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 67 PPHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 4679999999999999975332 24888888776
No 157
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=25.13 E-value=56 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.8
Q ss_pred eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (452)
Q Consensus 101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~ 135 (452)
..-++|+..|.+. -.++.|+.|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 3457899999885 678889999999999999764
No 158
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=25.01 E-value=20 Score=35.29 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=17.7
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 012955 77 SWIKSEGDVLSKGESVVVVES 97 (452)
Q Consensus 77 ~w~v~~Gd~V~~gd~l~~vet 97 (452)
++.|++||.|++||+|+.+-.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 457999999999999998864
No 159
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=24.91 E-value=60 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=36.6
Q ss_pred EeeeecCC---CCCCHHHHHHHHHHHHHHH-HcCCCCcCccCCCcEEEec
Q 012955 355 ITPVLQDA---DKLDLYLLSQKWKELVEKA-RSKQLQPHEYNSGTFTLSN 400 (452)
Q Consensus 355 ~vPVI~~a---~~~sl~eia~~i~~l~~ka-r~g~l~~~d~~ggTftISN 400 (452)
++--||.| +.=+-.+|.+...+|.+.. +.|+|.++|+..-+||+|.
T Consensus 31 mvRgIRGAtTve~Nt~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTvT~ 80 (148)
T 1xho_A 31 MVWAIRGATTVSDNTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTK 80 (148)
T ss_dssp -CEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred EEEEeeceeEcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 34455554 3447899999999998776 8899999999999999983
No 160
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=24.36 E-value=33 Score=33.96 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.9
Q ss_pred EeCCCCccCCCCeEEEEec
Q 012955 116 VVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 116 ~v~~G~~v~~G~~l~~i~~ 134 (452)
.|++|+.|..|++|+.+..
T Consensus 285 ~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 285 LVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp CCCTTCEECTTCEEEECCC
T ss_pred ccCCcCEECCCCEEEEECC
Confidence 4555666666666665543
No 161
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=23.22 E-value=81 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=25.5
Q ss_pred EEcCCCeEEEEEEe-CCCCccCCCCeEEEEec
Q 012955 104 VETFYDGILAAIVV-PEGESAPVGAAIGILAE 134 (452)
Q Consensus 104 v~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~ 134 (452)
+..+.-|.|..+.+ ++|+.|..|++|+.|+.
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEE
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEe
Confidence 34566687888877 89999999999999974
No 162
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=23.22 E-value=1.2e+02 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=39.7
Q ss_pred EcCCCCeecCCCeEEEEEeCc-eeeEE--EcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955 79 IKSEGDVLSKGESVVVVESDK-ADMDV--ETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (452)
Q Consensus 79 ~v~~Gd~V~~gd~l~~vetdK-~~~ev--~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~ 134 (452)
.+++||.|..||.+++|.-.. .+..| +....|+|.+| .+| ...+-++++.+++
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~ 185 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIET 185 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEec
Confidence 389999999999999987544 33444 34468999887 555 4578888888864
No 163
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=22.36 E-value=42 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.8
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 012955 78 WIKSEGDVLSKGESVVVVE 96 (452)
Q Consensus 78 w~v~~Gd~V~~gd~l~~ve 96 (452)
+.|++||+|++||+|+.+-
T Consensus 168 i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 168 VQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EEEcCCCEEcCCCEEEEcc
Confidence 4589999999999999885
No 164
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=20.97 E-value=60 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.8
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCcccchhhHHHh
Q 012955 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (452)
Q Consensus 187 ~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~ 223 (452)
...|.+.+.++++|||++.-. .-.|+.+|+..+
T Consensus 43 ~~~p~a~~~l~~~Gid~s~~~----ar~l~~~~~~~~ 75 (131)
T 1jf8_A 43 GVNPKAIEAMKEVDIDISNHT----SDLIDNDILKQS 75 (131)
T ss_dssp CCCHHHHHHHHHTTCCCTTCC----CCBCCHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCcccCc----cccCChHHhccC
Confidence 478999999999999986432 234777777654
No 165
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=20.22 E-value=68 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCCCcCccCCCcEEEec
Q 012955 363 DKLDLYLLSQKWKELVEKA-RSKQLQPHEYNSGTFTLSN 400 (452)
Q Consensus 363 ~~~sl~eia~~i~~l~~ka-r~g~l~~~d~~ggTftISN 400 (452)
+.=+-.+|.+...+|.+.. +.|+|.++|+..-+||+|.
T Consensus 13 ~~Nt~e~I~~at~eLl~~i~~~N~l~~~dIvSv~FT~T~ 51 (127)
T 1dbf_A 13 ERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATP 51 (127)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 3447789999999998776 8899999999999999983
Done!