BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012956
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 10/231 (4%)

Query: 191 WWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALI 247
           +W + +  L YI +    A    +  F       L    RL    A  L  E+  F  + 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262

Query: 248 LFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVA 307
           L    L +    VA   + +N      M  + + AAVS+R  ++LG    + A ++  V 
Sbjct: 263 LLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320

Query: 308 VFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVA 367
           + +        +L+ ++ R Q   L++ +  V+ L + L    A+   ++ +Q V +G  
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380

Query: 368 IGAGWQATVAYVNIGCYYLFGIPLGLILGYL-----VGLEVKGIWCGMLCG 413
            G      + +     Y++ G+P G ILG         L  KG W G + G
Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/153 (18%), Positives = 66/153 (43%)

Query: 260 VAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 319
           VA   + +++ G   M+   + +A +VR    LG      A+    V++ S +++ +   
Sbjct: 276 VAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITV 335

Query: 320 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYV 379
           L L++ R+   ++++ DP V+ +   +     L    +  Q + S    G        ++
Sbjct: 336 LSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFI 395

Query: 380 NIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLC 412
           +   ++  G+  G +L Y   + + G W  ++ 
Sbjct: 396 HAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIA 428


>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
          Length = 515

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 7/37 (18%)

Query: 354 IVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 390
           I++N ++ V +G+A G        Y++IGC Y  GIP
Sbjct: 182 IIVNGVKAVGTGIAFGD-------YMHIGCLYRPGIP 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,181,478
Number of Sequences: 62578
Number of extensions: 375360
Number of successful extensions: 762
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 6
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)