Query 012956
Match_columns 452
No_of_seqs 249 out of 1864
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.8E-51 1E-55 399.3 47.7 395 39-437 53-452 (455)
2 PRK10189 MATE family multidrug 100.0 8.9E-47 1.9E-51 372.6 49.5 393 39-434 65-468 (478)
3 PRK00187 multidrug efflux prot 100.0 1.8E-45 3.9E-50 363.3 48.9 386 39-427 46-443 (464)
4 PRK01766 multidrug efflux prot 100.0 8.9E-44 1.9E-48 352.3 47.5 390 40-432 49-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 1.2E-43 2.7E-48 347.1 47.7 383 39-432 46-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 2.2E-43 4.7E-48 348.0 47.1 385 40-431 50-438 (453)
7 TIGR01695 mviN integral membra 100.0 5.7E-33 1.2E-37 279.2 46.5 379 39-428 38-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.3E-32 4.9E-37 273.9 44.4 380 39-427 36-433 (488)
9 TIGR00797 matE putative efflux 100.0 5.2E-32 1.1E-36 258.6 38.9 309 39-350 29-341 (342)
10 PRK15099 O-antigen translocase 100.0 1.7E-31 3.8E-36 261.4 40.2 365 43-426 42-410 (416)
11 KOG1347 Uncharacterized membra 100.0 6E-33 1.3E-37 269.4 27.5 409 39-448 64-472 (473)
12 PF03023 MVIN: MviN-like prote 100.0 1.2E-28 2.6E-33 241.7 49.4 380 39-428 12-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 8E-25 1.7E-29 211.0 45.5 383 39-428 45-437 (518)
14 PRK10459 colanic acid exporter 99.9 5.2E-22 1.1E-26 199.0 43.6 359 41-427 44-404 (492)
15 COG0534 NorM Na+-driven multid 99.9 8E-23 1.7E-27 200.5 26.0 208 219-429 13-222 (455)
16 PRK10367 DNA-damage-inducible 99.9 6E-22 1.3E-26 194.2 26.9 207 219-427 5-211 (441)
17 COG2244 RfbX Membrane protein 99.9 2.5E-20 5.4E-25 186.4 39.0 364 40-425 44-408 (480)
18 PRK00187 multidrug efflux prot 99.9 7.5E-22 1.6E-26 195.3 26.9 206 219-428 6-215 (464)
19 PRK10189 MATE family multidrug 99.9 1.5E-21 3.3E-26 193.2 27.2 205 219-426 25-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.4E-21 5.1E-26 191.4 25.5 207 219-428 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 4E-21 8.7E-26 190.5 26.3 208 219-429 8-219 (456)
22 TIGR00797 matE putative efflux 99.8 2.9E-17 6.2E-22 156.9 23.8 194 231-427 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 4.7E-19 1E-23 150.1 7.5 162 231-394 1-162 (162)
24 PF01943 Polysacc_synt: Polysa 99.5 2.3E-11 5.1E-16 112.0 29.3 236 41-292 38-273 (273)
25 TIGR01695 mviN integral membra 99.5 1.1E-11 2.4E-16 124.8 27.6 149 55-205 275-428 (502)
26 PF03023 MVIN: MviN-like prote 99.4 9.8E-11 2.1E-15 115.4 26.1 163 41-205 236-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.4 1.1E-10 2.4E-15 117.1 23.1 196 226-428 2-204 (488)
28 PF13440 Polysacc_synt_3: Poly 99.4 2.6E-09 5.7E-14 97.1 29.9 220 48-291 30-251 (251)
29 COG0728 MviN Uncharacterized m 99.4 1.8E-09 4E-14 105.2 30.1 150 54-205 283-437 (518)
30 KOG1347 Uncharacterized membra 99.4 7E-11 1.5E-15 115.6 19.7 205 219-427 24-229 (473)
31 PF01554 MatE: MatE; InterPro 99.3 1.5E-12 3.2E-17 110.1 4.8 131 40-171 30-162 (162)
32 PRK15099 O-antigen translocase 99.1 5.4E-09 1.2E-13 102.6 19.3 171 246-427 25-196 (416)
33 PRK10459 colanic acid exporter 99.1 2.8E-07 6.1E-12 92.6 30.3 141 58-204 263-404 (492)
34 COG2244 RfbX Membrane protein 98.9 4.9E-07 1.1E-11 90.6 23.0 142 44-190 254-396 (480)
35 PF04506 Rft-1: Rft protein; 98.7 4.2E-05 9E-10 76.5 29.4 204 222-427 252-469 (549)
36 PF14667 Polysacc_synt_C: Poly 98.7 4.5E-06 9.8E-11 68.9 18.5 78 125-204 2-79 (146)
37 KOG2864 Nuclear division RFT1 98.5 0.00029 6.4E-09 66.3 26.4 296 126-426 127-447 (530)
38 PF14667 Polysacc_synt_C: Poly 98.0 3.9E-05 8.5E-10 63.3 9.6 78 347-427 2-79 (146)
39 PF01943 Polysacc_synt: Polysa 98.0 0.0023 5E-08 58.5 21.9 179 234-427 10-190 (273)
40 COG4267 Predicted membrane pro 98.0 0.013 2.8E-07 54.2 30.7 338 49-413 70-431 (467)
41 PF07260 ANKH: Progressive ank 97.8 0.02 4.4E-07 51.9 22.9 156 218-383 6-168 (345)
42 PF13440 Polysacc_synt_3: Poly 97.8 0.011 2.4E-07 53.3 21.8 164 245-426 7-171 (251)
43 KOG2864 Nuclear division RFT1 97.4 0.025 5.5E-07 53.8 19.0 164 37-205 279-449 (530)
44 PF04506 Rft-1: Rft protein; 97.3 0.008 1.7E-07 60.4 15.7 128 77-205 339-470 (549)
45 PF07260 ANKH: Progressive ank 97.0 0.25 5.5E-06 45.1 23.9 160 109-268 116-284 (345)
46 COG4267 Predicted membrane pro 88.0 25 0.00053 33.4 20.7 141 270-427 69-210 (467)
47 TIGR00822 EII-Sor PTS system, 82.7 37 0.00081 30.8 17.1 31 275-305 111-141 (265)
48 PF05975 EcsB: Bacterial ABC t 63.0 1.5E+02 0.0033 28.7 16.6 37 296-332 89-125 (386)
49 PF04505 Dispanin: Interferon- 54.6 79 0.0017 22.8 6.9 38 280-317 36-73 (82)
50 PRK09757 PTS system N-acetylga 46.9 2.3E+02 0.0049 25.9 15.7 31 275-305 112-142 (267)
51 PF14184 YrvL: Regulatory prot 46.8 1.5E+02 0.0032 23.7 13.8 111 84-196 5-116 (132)
52 COG5393 Predicted membrane pro 43.5 1.5E+02 0.0033 22.9 6.8 49 398-446 77-125 (131)
53 PF06305 DUF1049: Protein of u 39.3 65 0.0014 22.0 4.2 16 431-446 47-62 (68)
54 PF00558 Vpu: Vpu protein; In 37.7 59 0.0013 23.4 3.6 18 434-451 43-60 (81)
55 PF11457 DUF3021: Protein of u 35.8 2.2E+02 0.0048 22.5 15.9 18 423-440 118-135 (136)
56 PF03904 DUF334: Domain of unk 33.6 1.5E+02 0.0033 25.9 6.2 39 76-114 143-181 (230)
57 PF01102 Glycophorin_A: Glycop 27.3 95 0.002 24.4 3.6 23 405-427 68-90 (122)
58 PF05313 Pox_P21: Poxvirus P21 27.2 3E+02 0.0065 23.2 6.6 26 179-204 135-160 (189)
59 TIGR00383 corA magnesium Mg(2+ 27.2 2E+02 0.0043 26.9 6.7 52 377-430 259-317 (318)
60 PRK09546 zntB zinc transporter 26.7 1.6E+02 0.0036 27.6 6.0 50 378-430 266-323 (324)
61 PRK01637 hypothetical protein; 26.7 5E+02 0.011 23.8 18.3 13 284-296 112-124 (286)
62 PF04995 CcmD: Heme exporter p 25.8 1.8E+02 0.0038 18.2 4.4 31 406-436 7-38 (46)
63 PF07074 TRAP-gamma: Transloco 25.6 1.9E+02 0.0041 24.2 5.2 41 387-427 28-68 (170)
64 TIGR00891 2A0112 putative sial 24.5 6E+02 0.013 24.0 19.8 34 222-255 11-44 (405)
65 PF01102 Glycophorin_A: Glycop 24.5 1.2E+02 0.0025 23.9 3.7 23 182-204 68-90 (122)
66 PRK03612 spermidine synthase; 24.3 7.6E+02 0.017 25.1 21.5 31 40-72 44-74 (521)
67 PF13197 DUF4013: Protein of u 24.2 4.1E+02 0.009 22.0 15.1 24 219-242 40-63 (169)
68 COG0598 CorA Mg2+ and Co2+ tra 23.0 6.3E+02 0.014 23.7 9.3 50 378-430 264-321 (322)
69 COG3114 CcmD Heme exporter pro 22.9 2.3E+02 0.0049 19.3 4.2 13 406-418 19-31 (67)
70 PRK10739 putative antibiotic t 22.8 5E+02 0.011 22.4 8.0 55 286-344 22-76 (197)
71 COG4194 Predicted membrane pro 22.4 6.6E+02 0.014 23.7 10.4 15 2-16 144-158 (350)
72 PRK14472 F0F1 ATP synthase sub 21.2 1.1E+02 0.0023 25.8 3.2 41 402-442 12-52 (175)
73 PF03547 Mem_trans: Membrane t 21.0 7.4E+02 0.016 23.7 10.3 13 310-322 36-48 (385)
74 PRK08476 F0F1 ATP synthase sub 21.0 1.6E+02 0.0035 23.8 4.0 34 409-442 8-41 (141)
75 TIGR00881 2A0104 phosphoglycer 20.4 6.9E+02 0.015 23.1 10.9 16 280-295 45-60 (379)
76 COG3715 ManY Phosphotransferas 20.2 6.6E+02 0.014 22.8 16.6 61 273-333 109-170 (265)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.8e-51 Score=399.27 Aligned_cols=395 Identities=27% Similarity=0.403 Sum_probs=367.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEI 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 117 (452)
++++.+.+ ...+...+..|++.|.++.+||++|+||++++++..++++.+.++++++.+++ ..+.+|++.+++.+++.
T Consensus 53 aav~la~~-i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v 131 (455)
T COG0534 53 AAVGLANP-IFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV 131 (455)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 45666644 45556688899999999999999999999999999999999999999888776 89999999999998889
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-hC-CchhhHHHHHHHHHHHHH
Q 012956 118 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFID 195 (452)
Q Consensus 118 ~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~-~gv~Gaala~~i~~~~~~ 195 (452)
.+.+.+|+++..++.|+..++.+..+.+|+.||+|.+++.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..
T Consensus 132 ~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~ 211 (455)
T COG0534 132 LELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGA 211 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 68 999999999999999999
Q ss_pred HHHHHHHHhcCC--CCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 012956 196 ITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWS 273 (452)
Q Consensus 196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~ 273 (452)
++..+++++++. .....+..+.+++.+|++++.|+|..++++.+.......+.+.+++| +.++|+|+++.++.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~ 289 (455)
T COG0534 212 LLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFI 289 (455)
T ss_pred HHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHH
Confidence 999999988753 33323333446688999999999999999999999999999999999 55677999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHH
Q 012956 274 NMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALC 353 (452)
Q Consensus 274 ~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 353 (452)
.++..|++++.++.+++++|+||+|++++..+.+..+++.++...+++++++++++.++|++|+|+.+.+..++++.++.
T Consensus 290 ~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~ 369 (455)
T COG0534 290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALF 369 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 012956 354 IVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKE 433 (452)
Q Consensus 354 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 433 (452)
.++++.+.+..+.+||.||++.+++.++.+.|.+.+|+.++++... +|..|+|+++..++.+..+...+++++++|+++
T Consensus 370 ~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T COG0534 370 QPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK 448 (455)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999998766 899999999999999999999999999888887
Q ss_pred HHHH
Q 012956 434 AAVA 437 (452)
Q Consensus 434 ~~~~ 437 (452)
..+.
T Consensus 449 ~~~~ 452 (455)
T COG0534 449 AVAA 452 (455)
T ss_pred hhhc
Confidence 6543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.9e-47 Score=372.64 Aligned_cols=393 Identities=19% Similarity=0.230 Sum_probs=354.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC--CCH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQ 115 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~ 115 (452)
++++.+.++ ..+...+..|++.|.++.++|++|+||+|++++..++++.++.+++++.+++ ..+.++++.++. .|+
T Consensus 65 AA~~i~~~i-~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~ 143 (478)
T PRK10189 65 AGVGLADSF-NMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATP 143 (478)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCh
Confidence 445555444 4455677889999999999999999999999999999999999999988876 778889999884 689
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHh----CCchhhHHHHHHHHH
Q 012956 116 EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASW 191 (452)
Q Consensus 116 ~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~gv~Gaala~~i~~ 191 (452)
+..+.+.+|+++..++.|+..+....++++||.||++.++..+++..++|++++++++++. ++|+.|+++|+.+++
T Consensus 144 ~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~ 223 (478)
T PRK10189 144 EVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISR 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 789999999999999
Q ss_pred HHHHHHHHHHHHhc-C--CCCCCCC-CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 012956 192 WFIDITRLLYIFSG-A--CGPTWSG-FSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICM 267 (452)
Q Consensus 192 ~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~ 267 (452)
.+..++..+++.++ + .+.++++ ++..+++.+|+++++|+|..++...........+.+++.+| +.++|+++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~ 301 (478)
T PRK10189 224 YIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAF 301 (478)
T ss_pred HHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHH
Confidence 99988876666543 2 1112222 11235678999999999999999998888888888888888 45677999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHH
Q 012956 268 NILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLT 347 (452)
Q Consensus 268 ~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 347 (452)
++.++..++..|++++..|.++|++|++|++++|+..+.+.++++.++..++++++++++++.++|++|+|+.+.+..++
T Consensus 302 ~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l 381 (478)
T PRK10189 302 SIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILI 381 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 348 PLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 348 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
++.++..++++.+.+..+.++|.||++.+++.++.+.|++.+|+.+++....++|+.|+|++..+++.+..++..+++++
T Consensus 382 ~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~ 461 (478)
T PRK10189 382 WLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS 461 (478)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred cChHHHH
Q 012956 428 TNWNKEA 434 (452)
Q Consensus 428 ~~~~~~~ 434 (452)
.+|+++.
T Consensus 462 ~~W~~~~ 468 (478)
T PRK10189 462 GRWLWKY 468 (478)
T ss_pred CccccCC
Confidence 9999843
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.8e-45 Score=363.28 Aligned_cols=386 Identities=22% Similarity=0.269 Sum_probs=344.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 118 (452)
++++.+..... +...+..|++.|.++.+||++|+||+|++++..++++.+.++++++..++..+.+|++.+++.|++..
T Consensus 46 Aa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~ 124 (464)
T PRK00187 46 AGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNV 124 (464)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555544 44566789999999999999999999999999999999999999988777667899999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHh----CCchhhHHHHHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFI 194 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~gv~Gaala~~i~~~~~ 194 (452)
+.+.+|+++.+++.|+..+....++++|+.|+++.+++.+++..++|+++|++|+++. ++|+.|+++||.+++...
T Consensus 125 ~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~ 204 (464)
T PRK00187 125 DAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGM 204 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999863 489999999999999888
Q ss_pred HHHHHHHHHhcCC--CCC-CCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHH
Q 012956 195 DITRLLYIFSGAC--GPT-WSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILG 271 (452)
Q Consensus 195 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~ 271 (452)
.+...+++++++. +.+ +++..+.+++.+|++++.|+|.++++..+.....+++.+++++|+ .++|+++++.++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~ 282 (464)
T PRK00187 205 ALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVS 282 (464)
T ss_pred HHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHH
Confidence 8777666665421 111 111222356779999999999999999999999999999999994 46779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCC--ch---hHHHHHHHH
Q 012956 272 WSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSS--DP---EVIDLVIDL 346 (452)
Q Consensus 272 ~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~ 346 (452)
+..++..|++++..+.++|++|+||+|++++..+.+..+++.++++.+++++++++++.++|++ |+ |+.+.+..+
T Consensus 283 l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~ 362 (464)
T PRK00187 283 VAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSL 362 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 44 688999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 347 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
+++.+++.++.+++.+..+++++.||++.+++.++++.|++++|+.+++.+.+++|+.|+|+++.+++.+..+....+++
T Consensus 363 l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 363 LAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred HHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999887766664
Q ss_pred h
Q 012956 427 K 427 (452)
Q Consensus 427 ~ 427 (452)
+
T Consensus 443 ~ 443 (464)
T PRK00187 443 W 443 (464)
T ss_pred H
Confidence 3
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.9e-44 Score=352.34 Aligned_cols=390 Identities=21% Similarity=0.341 Sum_probs=348.7
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHH
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 118 (452)
+++.+... ......+..|++.+..+.+||++|++|+|++++..+.++.++++.+++++++ ..+.+++..+++.|++..
T Consensus 49 a~~~~~~~-~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 127 (456)
T PRK01766 49 AVAIGTSI-WLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVA 127 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHH
Confidence 33434333 3334567788999999999999999999999999999999999999988876 677789999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH----hCCchhhHHHHHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK----LGLGLVGAAVALNASWWFI 194 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~----~~~gv~Gaala~~i~~~~~ 194 (452)
+.+.+|+++.+++.++..+..+.++++|+.|+++.+++.++++.++|+++++++++. .++|+.|+++||.+++.+.
T Consensus 128 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~ 207 (456)
T PRK01766 128 DIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVM 207 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999864 2489999999999999999
Q ss_pred HHHHHHHHHhcCCC---CCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHH
Q 012956 195 DITRLLYIFSGACG---PTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILG 271 (452)
Q Consensus 195 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~ 271 (452)
.++..++.++++.. ..+.++.+.+++..|++++.++|.++++..+......+..+++++|+ .++++++++.++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~ 285 (456)
T PRK01766 208 FLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSS 285 (456)
T ss_pred HHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHH
Confidence 99888777665321 11122222345779999999999999999999988899999999984 45779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHH
Q 012956 272 WSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLA 351 (452)
Q Consensus 272 ~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~ 351 (452)
+..++..|++.+..+.++|++|+||++++++..+.+.++++.++++.+++++.+++++.++|++|+|+.+.+..++++..
T Consensus 286 ~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~ 365 (456)
T PRK01766 286 LLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAA 365 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChH
Q 012956 352 LCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWN 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (452)
+..++.+++....++++|.||++.+++.++++.|++.+|..+++...+++|+.|+|+++.+++.+..++..+++++.+|+
T Consensus 366 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
T PRK01766 366 LFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQ 445 (456)
T ss_pred HHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999989999999998877889999999999999999999888887766555
Q ss_pred H
Q 012956 432 K 432 (452)
Q Consensus 432 ~ 432 (452)
.
T Consensus 446 ~ 446 (456)
T PRK01766 446 P 446 (456)
T ss_pred H
Confidence 4
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=347.10 Aligned_cols=383 Identities=16% Similarity=0.159 Sum_probs=325.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEI 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 117 (452)
++++.+.+.... ...+..|++.+.++.+||++|+||+|++++..++++.++++++++..+. ..+.++++.+++.|++.
T Consensus 46 Aa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v 124 (441)
T PRK10367 46 GGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAV 124 (441)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 445544444333 4566778999999999999999999999999999999999999988876 77889999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 012956 118 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDIT 197 (452)
Q Consensus 118 ~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~ 197 (452)
.+.+.+|+++..++.|+..+..+.++++|+.||++.+++..+++.++|+++|+++++.+++|+.|+++||.+++.+..++
T Consensus 125 ~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~ 204 (441)
T PRK10367 125 LEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLI 204 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999888
Q ss_pred HHHHHHhcCC-C-CCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 012956 198 RLLYIFSGAC-G-PTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNM 275 (452)
Q Consensus 198 ~~~~~~~~~~-~-~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~ 275 (452)
..+++++++. + .+.+.++.+.++.+|+++++|.|..+++..+.......+.+++++|+ .++|+|+++.++.++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~ 282 (441)
T PRK10367 205 GLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAY 282 (441)
T ss_pred HHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHH
Confidence 7777765421 1 11111221112468999999999999999999999999999999994 467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHH
Q 012956 276 VSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIV 355 (452)
Q Consensus 276 ~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 355 (452)
+..|++++.+|.++|++|+||+|++|+..+.+.++++..+.+.+++++.+++++.++|++|+|+.+.+..++++.++..+
T Consensus 283 ~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~ 362 (441)
T PRK10367 283 ALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPL 362 (441)
T ss_pred HHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887644
Q ss_pred HHhHHHHHHHHHhhcC---ccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 012956 356 INNIQPVLSGVAIGAG---WQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNK 432 (452)
Q Consensus 356 ~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 432 (452)
.........+++++.+ |++.+++.+.++.|+..+ . .+.+|+.|+|++..+++.+..++..+++++ +|++
T Consensus 363 ~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-----~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 363 VGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-----T--LPWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH-----H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 3334444444555555 599999999988764221 1 134799999999999999999987766554 4744
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.2e-43 Score=347.97 Aligned_cols=385 Identities=19% Similarity=0.229 Sum_probs=341.1
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHH
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 118 (452)
+++.+... ..+...+..|++.|.++.++|++|+||+|++++.+++++.+..+++++..++ ..+.+|++.+++.|++..
T Consensus 50 a~~~~~~~-~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~ 128 (453)
T PRK09575 50 GINMAWPV-IGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTL 128 (453)
T ss_pred HHHHHHHH-HHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhH
Confidence 33433333 3334456778889999999999999999999999999999999999988876 788999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITR 198 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~ 198 (452)
+.+.+|+++..++.|+..+.....+.+|+.|+++.++..++++.++|+++|+++++.+++|+.|+++|+.+++.+..++.
T Consensus 129 ~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~ 208 (453)
T PRK09575 129 ELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLG 208 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999988
Q ss_pred HHHHHhcCCCCCC--CCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Q 012956 199 LLYIFSGACGPTW--SGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMV 276 (452)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~ 276 (452)
.+++++++...++ +.+ +.+++.+|+++++|.|..++...........+.+.+.+|+. .++|+++++.++..+..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~ 286 (453)
T PRK09575 209 LGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLV 286 (453)
T ss_pred HHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHH
Confidence 7777665332222 222 23457799999999999999999888888888888888843 3577999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCC-chhHHHHHHHHHHHHHHHHH
Q 012956 277 SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSS-DPEVIDLVIDLTPLLALCIV 355 (452)
Q Consensus 277 ~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~ 355 (452)
..|++.+..|.++|++|+||+|++++..+.++++++..+++.+++++.+++++.++|++ |||+.+.+.+++++.+++.+
T Consensus 287 ~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~ 366 (453)
T PRK09575 287 AEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMF 366 (453)
T ss_pred HHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred HHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChH
Q 012956 356 INNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWN 431 (452)
Q Consensus 356 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (452)
++++..+..+.+++.||++.+++.++... ++++|..++++.. +|+.|+|+++.+++.+..++..+++++ +|+
T Consensus 367 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 367 LDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999998765 6789999988654 799999999999999988887765543 443
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.7e-33 Score=279.16 Aligned_cols=379 Identities=14% Similarity=0.127 Sum_probs=309.4
Q ss_pred hhccchhHHHHHHHHHHH-HHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHh--CC
Q 012956 39 RKLRHRRVLIRRHAYYIQ-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALM-LMFM-YIFAQQILSLI--GQ 113 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~ 113 (452)
++++.+.++...+..... .|++++..+.+.++.+++ |++++.+.+++....+.+.+ ..++ .++.+++..++ +.
T Consensus 38 ~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 115 (502)
T TIGR01695 38 DAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGF 115 (502)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344445555444433333 568888777776654332 57777777766665544443 4444 66777777777 45
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHH--HHHHHHH
Q 012956 114 TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAA--VALNASW 191 (452)
Q Consensus 114 ~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaa--la~~i~~ 191 (452)
+++..+.+.+|+++..++.++..+..+.++++|+.||++.++..+++.++++++...++ ..++|..|++ +++++++
T Consensus 116 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~ 193 (502)
T TIGR01695 116 ADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGG 193 (502)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHH
Confidence 67777899999999999999999999999999999999999999999998887753333 4468999988 9999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHH
Q 012956 192 WFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILG 271 (452)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~ 271 (452)
.+..++..++.+|++.+.+ .+++ .+++..|++++++.|..+++....+....|..+.+.++.+ ++++|+.+.++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~ 269 (502)
T TIGR01695 194 VAQLLIQLPFLRKAGFLLK-PRFN-FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYYANRIYQ 269 (502)
T ss_pred HHHHHHHHHHHHHCCCccc-CcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHH
Confidence 9998888777766432211 1222 1346789999999999999999999999999887777743 4679999999998
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCC----chhHHHHHHHH
Q 012956 272 WSNM-VSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSS----DPEVIDLVIDL 346 (452)
Q Consensus 272 ~~~~-~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~ 346 (452)
+... +..+++++..|.+++++|++|++++++..+++.+....++.+.++++.++++++.+++.+ |+|..+.+..+
T Consensus 270 ~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~ 349 (502)
T TIGR01695 270 LPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 8765 578999999999999999999999999999999999999999999999999999999976 56788899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 347 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
+++++++.++.++.....+.+++.||+|.+++.+..+. ++++++++++. +.+|..|+|+++.+++.+...+..++.+
T Consensus 350 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~ 426 (502)
T TIGR01695 350 LAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLN 426 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 67888888874 3489999999999999999988877776
Q ss_pred hc
Q 012956 427 KT 428 (452)
Q Consensus 427 ~~ 428 (452)
|+
T Consensus 427 ~~ 428 (502)
T TIGR01695 427 RR 428 (502)
T ss_pred Hh
Confidence 54
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.3e-32 Score=273.90 Aligned_cols=380 Identities=15% Similarity=0.159 Sum_probs=310.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEI 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 117 (452)
+.++...+....+......|++.+..+.+||+.|++|+++.++.+++++.+.++.+++++++ ..+.+++...++.+++.
T Consensus 36 G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~ 115 (488)
T TIGR02900 36 GLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS 115 (488)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH
Confidence 34445555555555555679999999999999999999999999999999999999988876 55666666656555543
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhhHHHHHHHHHH
Q 012956 118 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL-----GLGLVGAAVALNASWW 192 (452)
Q Consensus 118 ~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~-----~~gv~Gaala~~i~~~ 192 (452)
. .++++.++..++..+....++++|+.+|++..+..++++.++|+.++..++..+ +.|+.|+++++.+++.
T Consensus 116 ~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~ 191 (488)
T TIGR02900 116 L----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGEL 191 (488)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 2 467888999999999999999999999999999999999999988877666532 3578889999999999
Q ss_pred HHHHHHHHHHHhcCC-C--CCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----h-hhHH---HH
Q 012956 193 FIDITRLLYIFSGAC-G--PTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLK----N-AKLS---VA 261 (452)
Q Consensus 193 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~-~~~a---va 261 (452)
+..++..++.++++. + .++.+....+++.+|+++++++|..++++...+....|+.++++.. . ...+ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g 271 (488)
T TIGR02900 192 VSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYG 271 (488)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999887666554321 1 1111112234568999999999999999999999999988776532 1 0111 22
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHH
Q 012956 262 GL-SICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVI 340 (452)
Q Consensus 262 ~~-~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 340 (452)
.+ +.+.++..+...+..+++++..|.+++++|++|.++.++..++..+++..++.+.++.+..+++++..++.++++
T Consensus 272 ~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-- 349 (488)
T TIGR02900 272 KLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD-- 349 (488)
T ss_pred HHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--
Confidence 22 355667777778889999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHH
Q 012956 341 DLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCV 420 (452)
Q Consensus 341 ~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 420 (452)
+.++++++++..++.++.....+.+++.||+|..++.++.+. ++++++.+.+...|.+|+.|+|+++.+++.+..++
T Consensus 350 --~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~ 426 (488)
T TIGR02900 350 --AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTIL 426 (488)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999987 78888888775347799999999999999999998
Q ss_pred HHHHHhh
Q 012956 421 IFGIIYK 427 (452)
Q Consensus 421 ~~~~~~~ 427 (452)
..+..+|
T Consensus 427 ~~~~~~~ 433 (488)
T TIGR02900 427 NLAEIKK 433 (488)
T ss_pred HHHHHHH
Confidence 8887765
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=5.2e-32 Score=258.65 Aligned_cols=309 Identities=30% Similarity=0.491 Sum_probs=274.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEI 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 117 (452)
++.+.+. ........+..|++++..+.+++++|++|+|+.++..++++.+..+++++.+++ ..+.+|+..+++.|++.
T Consensus 29 ~~~~~a~-~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 107 (342)
T TIGR00797 29 AAVSLGS-SVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEV 107 (342)
T ss_pred HHHHHhH-HHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH
Confidence 4455553 345566677889999999999999999999999999999999999999999876 78888998888878888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH-HhC-CchhhHHHHHHHHHHHHH
Q 012956 118 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-KLG-LGLVGAAVALNASWWFID 195 (452)
Q Consensus 118 ~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~-~gv~Gaala~~i~~~~~~ 195 (452)
.+++.+|+++.++..++..+..+..+.+|+.||++.++..++++.++++.++++++. .+| +|+.|+++++.+++.+..
T Consensus 108 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~ 187 (342)
T TIGR00797 108 AELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMF 187 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999987 677 889999999999999999
Q ss_pred HHHHHHHHhc-CCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 012956 196 ITRLLYIFSG-ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN 274 (452)
Q Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~ 274 (452)
++..++.+++ +.+.++++....+++..|+++++|.|..++++...+....+..+.+.+| +.++++|+++.++.++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~ 265 (342)
T TIGR00797 188 LLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLF 265 (342)
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHH
Confidence 8887777653 2222222212234577999999999999999999999999998898888 445779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHH
Q 012956 275 MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLL 350 (452)
Q Consensus 275 ~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 350 (452)
.+..+++++..|.+++++|++|.++.++..+++.+..+.++.+.+.++.++++++.++|++||++.+.+..++++.
T Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 266 MPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.7e-31 Score=261.40 Aligned_cols=365 Identities=12% Similarity=0.015 Sum_probs=298.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHH
Q 012956 43 HRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAA 121 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 121 (452)
...+....+......|++.+.++.++|+ ++|+|+.++.+++++.+.++.+++++++ ..+.+|+...++.+++..
T Consensus 42 ~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~--- 116 (416)
T PRK15099 42 NFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQ--- 116 (416)
T ss_pred HHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH---
Confidence 3444555555555777878888999987 6788899999999999999999998876 788899988777666532
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHH
Q 012956 122 GTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLY 201 (452)
Q Consensus 122 ~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~ 201 (452)
.+..+..+..++..+....++.+|+.||++.++..++++.++|+.+ ++++... .|+.|+++|+++++.+..+...++
T Consensus 117 -~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~ 193 (416)
T PRK15099 117 -GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIM 193 (416)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777888999999999999999999999999999887 4544442 399999999999999988777766
Q ss_pred HHhcCC-CCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcChhhHHHHHHHHHHHHHHH-HHHHHH
Q 012956 202 IFSGAC-GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAG-YLKNAKLSVAGLSICMNILGW-SNMVSI 278 (452)
Q Consensus 202 ~~~~~~-~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~ava~~~i~~~i~~~-~~~~~~ 278 (452)
++|++. +.++.+++ .+++.+|+++++|.|..+++....+....++.+++ .+| +.++|.|+.+.|+.+. ...+..
T Consensus 194 ~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~ 270 (416)
T PRK15099 194 LIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITA 270 (416)
T ss_pred HHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHH
Confidence 665432 11111222 24567899999999999999999999999988885 777 4468899999999775 478899
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHh
Q 012956 279 GMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINN 358 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~ 358 (452)
+++++..|.++++ +|.++.++..++..+....++.+.+++++++++++.+++.+|+ ++++.+++++++++.++..
T Consensus 271 ~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~ 345 (416)
T PRK15099 271 SFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKV 345 (416)
T ss_pred HHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 6789999999999999999999999999999999999998765 5667889999999999998
Q ss_pred HHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 359 IQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 359 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
.+......+.+.++++......+.. .+.++++++++ .|.+|..|+++++.+++.+...+..+...
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l--i~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 346 GAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWL--IPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777888887766666554 47888888888 45589999999999999999988776554
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=6e-33 Score=269.42 Aligned_cols=409 Identities=45% Similarity=0.743 Sum_probs=385.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHH
Q 012956 39 RKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 118 (452)
++.+.+.+..+....++..|+..+..+.++|++|.++++......+++.......+++.+.++.+.+|++..+++|+++.
T Consensus 64 aa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~ 143 (473)
T KOG1347|consen 64 ASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDIS 143 (473)
T ss_pred HHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHH
Confidence 45556677777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITR 198 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~ 198 (452)
..+..|.++..+..+........+.++|++++..+..+......++|+.+++++++..++|..|++++..++++......
T Consensus 144 ~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l 223 (473)
T KOG1347|consen 144 RDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRIL 223 (473)
T ss_pred HHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHH
Q 012956 199 LLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSI 278 (452)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~ 278 (452)
..|.........|..+.+. ++.++++++.+.|..++..++++.+.......+.++....++++.++..++....+++..
T Consensus 224 ~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~ 302 (473)
T KOG1347|consen 224 LLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPG 302 (473)
T ss_pred HHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888776555666666666 889999999999999999999999999999999999877889999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHh
Q 012956 279 GMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINN 358 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~ 358 (452)
+++.+...++++.+|+++++++|.....+...++.++...+..+....+.+..+|++|+|+.+...+..++++...+.++
T Consensus 303 ~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~ 382 (473)
T KOG1347|consen 303 AFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNA 382 (473)
T ss_pred hhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 012956 359 IQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAG 438 (452)
Q Consensus 359 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (452)
.+.++.+..++.|..+...+.++...++..+|...++.+..++|..|+|.++..+..+..........+.+|+++..+.+
T Consensus 383 ~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~ 462 (473)
T KOG1347|consen 383 LQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAF 462 (473)
T ss_pred chhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHH
Confidence 99999999999999999999999999999999999998778899999999999998888888888888899999999999
Q ss_pred HHhhhhcCCC
Q 012956 439 DRIRKWGGHT 448 (452)
Q Consensus 439 ~~~~~~~~~~ 448 (452)
++...++.+.
T Consensus 463 ~~~~~~~~~~ 472 (473)
T KOG1347|consen 463 ARIIASLVLV 472 (473)
T ss_pred HHHHhhccCC
Confidence 9888776654
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.2e-28 Score=241.66 Aligned_cols=380 Identities=16% Similarity=0.167 Sum_probs=328.2
Q ss_pred hhccchhHHHHHHHHHHH-HHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh--CCC
Q 012956 39 RKLRHRRVLIRRHAYYIQ-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLI--GQT 114 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~--~~~ 114 (452)
|+...+.+..+.+...+. .++.++..|..++.. ++|+|+.++..++.+.+..+.+++++++ .++++++...+ +.+
T Consensus 12 Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~ 90 (451)
T PF03023_consen 12 DAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFS 90 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 555566666666665554 458999999999998 8899999999999998888888888876 78888888876 567
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCc---hhhHHHHHHHHH
Q 012956 115 QEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGAAVALNASW 191 (452)
Q Consensus 115 ~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---v~Gaala~~i~~ 191 (452)
++..+.+.+.+++..+..++..+..+..+++|+++|...+....++.++..++...++... .| +.+.++|..++.
T Consensus 91 ~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la~g~~~g~ 168 (451)
T PF03023_consen 91 PETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALAWGVLIGA 168 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998887776654433333 56 889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHH
Q 012956 192 WFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILG 271 (452)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~ 271 (452)
.+..++.+...+|...+.+. ++++ +.+..|++++...|..+......+...++..+.+.++.+. +++++.+.++.+
T Consensus 169 ~~~~l~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~YA~~l~~ 244 (451)
T PF03023_consen 169 IIQFLIQLPYLRRFGFRFRP-KFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALNYAQRLYQ 244 (451)
T ss_pred HHHHHHHHHHHHHCCCcccc-cCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHHH
Confidence 99999888887775433221 2222 2256999999999999999999999999999999998654 669999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCC----chhHHHHHHHH
Q 012956 272 WSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSS----DPEVIDLVIDL 346 (452)
Q Consensus 272 ~~~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~ 346 (452)
++. .+..+++++..|..+++..++|.++.++..+++++..+.+.+|.++.+..+++++.+++.. |+|..+....+
T Consensus 245 lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~ 324 (451)
T PF03023_consen 245 LPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASA 324 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHH
Confidence 988 5577999999999999999999999999999999999999999999999999999999852 57778889999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 347 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
+++++++.++.++...+...+.+.||+|.+++.+.++. ++++.+.+++ .+.+|..|+++++.++..+..++....++
T Consensus 325 l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~ 401 (451)
T PF03023_consen 325 LRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLR 401 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 7888888777 55599999999999999999998888776
Q ss_pred hc
Q 012956 427 KT 428 (452)
Q Consensus 427 ~~ 428 (452)
|+
T Consensus 402 r~ 403 (451)
T PF03023_consen 402 RR 403 (451)
T ss_pred HH
Confidence 64
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.96 E-value=8e-25 Score=211.03 Aligned_cols=383 Identities=14% Similarity=0.098 Sum_probs=317.7
Q ss_pred hhccchhHHHHHHHHHHHHH-HHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh-CC--
Q 012956 39 RKLRHRRVLIRRHAYYIQLG-MGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ-- 113 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~g-l~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~-- 113 (452)
|++..+..+.+.+--.+..| ++++..|..+++..++++|+.++..+........+.+..+++ .++.+.+.+.. +.
T Consensus 45 DAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~ 124 (518)
T COG0728 45 DAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF 124 (518)
T ss_pred HHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44445555556655555555 789999999999888878888877777776777777777776 56666666343 32
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 012956 114 TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWF 193 (452)
Q Consensus 114 ~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~ 193 (452)
|++....+....+++.+.+++..+.....+.+|+.+|...+.+..+..++.-+.....+....+.-..+.++|+.++.+.
T Consensus 125 ~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~ 204 (518)
T COG0728 125 DETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLL 204 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 34444467888899999999999999999999999999999999999988888665555544332367889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 012956 194 IDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWS 273 (452)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~ 273 (452)
+.++.+..++|.+...++ ++.+++ +..|++.+.-.|..++....++...+++.+++.+..+. ++.+..+.++.++.
T Consensus 205 Q~l~~lp~l~~~g~~~~p-~~~~~~-~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gs--is~l~YA~rl~qlP 280 (518)
T COG0728 205 QLLVQLPALRKAGLLIKP-RFGFKD-PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGS--VSWLYYADRLYQLP 280 (518)
T ss_pred HHHHHHHHHHHcccccCC-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhh
Confidence 999999888886432222 222222 56999999999999999999999999999999998555 55999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCC----chhHHHHHHHHHH
Q 012956 274 N-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTP 348 (452)
Q Consensus 274 ~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~ 348 (452)
. .+..++++...|..|++..++|.++.++..+++++.++.+.+|.+..+.++++++.+++.. +++........+.
T Consensus 281 lGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~ 360 (518)
T COG0728 281 LGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALA 360 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 8 6788999999999999999999999999999999999999999999999999999999853 4666888899999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012956 349 LLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKT 428 (452)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 428 (452)
.++++.++.....+....+++.+|+|.|+.+++++. ++++.++.++ .+.+|..|.+.++.++.++...+.++..+|+
T Consensus 361 ~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 361 AYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997 7888888666 4558999999999999988888877777654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.93 E-value=5.2e-22 Score=198.95 Aligned_cols=359 Identities=13% Similarity=0.128 Sum_probs=274.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHH
Q 012956 41 LRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISN 119 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 119 (452)
++...++..++......|++.+. .| ++|.+ ++..++.+.+..+.+++++++ ..+.+++...++ +++.
T Consensus 44 ~~~~~~~~~~~~~~~~~Gl~~ai----i~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-- 111 (492)
T PRK10459 44 LTMSLVIIGFADTLSDMGIGASI----IQ---RQDIS--HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL-- 111 (492)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHH----Hh---cccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh--
Confidence 33444455555555566666654 22 12211 244566677777777777766 444455444444 4443
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHH
Q 012956 120 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRL 199 (452)
Q Consensus 120 ~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~ 199 (452)
...+++.++..++..+.....+.+|+.++.+......++..+...++...+. ..+.|+.+.++++.+++.+..+...
T Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 112 --APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2367777888888888899999999999999999999988888877766555 3578999999999999988776543
Q ss_pred HHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH-HHH
Q 012956 200 LYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNM-VSI 278 (452)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~-~~~ 278 (452)
...++ +.+. +++ .+++..|++++++.|...+++...+....|..+++.+.+ ..++|.|+.+.++.+.... +..
T Consensus 189 ~~~~~-~~~~---~~~-~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~ 262 (492)
T PRK10459 189 YFGRK-IYRP---ALH-FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINP 262 (492)
T ss_pred HHhcc-cCCc---cce-ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHH
Confidence 32222 2111 111 124568999999999999999999999999988877643 3457899999999887654 455
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHh
Q 012956 279 GMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINN 358 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~ 358 (452)
.+++...|..++. ++|.++.++.+++..+....+++|+++.+.++++++..++.+++ ++.+...++++++..++..
T Consensus 263 ~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~ 338 (492)
T PRK10459 263 IITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRS 338 (492)
T ss_pred HHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHH
Confidence 5788999999986 67889999999999999999999999999999999999988654 6778999999999999999
Q ss_pred HHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 359 IQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 359 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
........+++.||+|..+..+++.. +..+|..+.+. +.+|+.|+++++.+++.+......+...|
T Consensus 339 ~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 339 VGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776 66777666553 34799999999999999988887776633
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.92 E-value=8e-23 Score=200.46 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=198.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 298 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 298 (452)
++..|+++++++|.+++++.+.....+|+.++++++ ++++|+.++++++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 457999999999999999999999999999999999 566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHH
Q 012956 299 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAY 378 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 378 (452)
++++..+++...+++++++..++.+.+++++.+++.+++|+.+.+.+|+++..++.++..++....+.+++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHh-hC-CChhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012956 379 VNIGCYYLFGIPLGLILGYL-VG-LEVKGIWCGMLCGTILQTCVIFGIIYKTN 429 (452)
Q Consensus 379 ~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 429 (452)
.++++. +.++.+++++.+. .+ +|+.|+++|+.+++.+..++..+++.+++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998 8999999999877 46 99999999999999999999888887655
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.91 E-value=6e-22 Score=194.20 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=191.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 298 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 298 (452)
+++.|+++++++|.+++++.......+|+.++++++. +.++|+.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3558999999999999999999999999999999852 445779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHH
Q 012956 299 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAY 378 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 378 (452)
++++..++++.++++++++..++...+.+++.++++.|+|+.+.+.+|+++..++.++........+++++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 379 VNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 379 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
.++++. ++++++++++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 789999998877778999999999999999988776666554
No 17
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=2.5e-20 Score=186.36 Aligned_cols=364 Identities=14% Similarity=0.130 Sum_probs=271.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHH
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 118 (452)
.+....++...+......|++.+..+.++++.+++|++..... ....+......+.+.........+. +++
T Consensus 44 ~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~-- 115 (480)
T COG2244 44 LYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI------DPV-- 115 (480)
T ss_pred eeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Chh--
Confidence 4455666777777777899999999999998766665555444 4444444444443333333333222 122
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITR 198 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~ 198 (452)
....+++..+..++.......++.+|+.++++......+.+ ..-......+.. ....+..++...+........
T Consensus 116 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 189 (480)
T COG2244 116 --LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVL 189 (480)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHH
Confidence 22356788999999999999999999999999999884444 222222122221 344555666666666655555
Q ss_pred HHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHH
Q 012956 199 LLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSI 278 (452)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~ 278 (452)
..+..+++....+...+. .++..|++++.++|....+....+....|+.+++..-+ +..+|.|+.+.++......+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~ 267 (480)
T COG2244 190 LILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVAS 267 (480)
T ss_pred HHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHH
Confidence 555442222111112221 35779999999999999999999999999988887753 3457899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHh
Q 012956 279 GMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINN 358 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~ 358 (452)
+++.+..|..++.+.++|.++.++..++..++...++.+..+.+..+++++..++.+++ ++.+...++++++..++..
T Consensus 268 ~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~ 345 (480)
T COG2244 268 ALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLS 345 (480)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765 4448889999999999999
Q ss_pred HHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHH
Q 012956 359 IQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGII 425 (452)
Q Consensus 359 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~ 425 (452)
........+++.|+++..++.+.++. +.++.+++.+ .+.+|..|++.++ .+.........+..
T Consensus 346 ~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l--i~~~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 346 LVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL--IPRFGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH--HHhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999887 7777777777 5568999999999 44333333333333
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=7.5e-22 Score=195.27 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=187.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 298 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 298 (452)
++..|++++.++|.+++++.+.+...+|+.+++++| +.++|+++++.++.++...+..|++++..+.++|++|++|+|
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 466999999999999999999999999999999998 456779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHH
Q 012956 299 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAY 378 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 378 (452)
++++..+.+..++++++++..++++ +.+++.++++.|+|+.+.+.+|+++..++.++..+....++++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 578999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHh----hCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012956 379 VNIGCYYLFGIPLGLILGYL----VGLEVKGIWCGMLCGTILQTCVIFGIIYKT 428 (452)
Q Consensus 379 ~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 428 (452)
.++++. ++++++++++.+. |++|+.|+++|+.+++....+...++++++
T Consensus 163 ~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 163 ISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999987 6799998887542 468999999999999888777665555543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.90 E-value=1.5e-21 Score=193.18 Aligned_cols=205 Identities=18% Similarity=0.175 Sum_probs=189.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 298 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 298 (452)
-+..|+++++++|.+++++.......+|+.+++++| ++++|+++++.++..+...+..+++++..+.++|++|++|+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356999999999999999999999999999999998 456779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccC--CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchh
Q 012956 299 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFS--SDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATV 376 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 376 (452)
++++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+.+|+++..++.++..+.....+++++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHhhhhHHHHHHHHh----hCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 377 AYVNIGCYYLFGIPLGLILGYL----VGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
++.++... ++++++.+++.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 183 ~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 7888888887653 4789999999999999998887665554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=2.4e-21 Score=191.40 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=193.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 297 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~ 297 (452)
++..|++++.++|..++++.+.+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45689999999999999999999999999999996 7 44677999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhH
Q 012956 298 RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 377 (452)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 377 (452)
|++++..+.++.++++++++.++++..+++++.++++.|+|+.+.+.+|+++..++.++..+.....+.+++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012956 378 YVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKT 428 (452)
Q Consensus 378 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 428 (452)
+.++.+. ++++++++++.+.+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887 8899999999877789999999999999999988877666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=4e-21 Score=190.52 Aligned_cols=208 Identities=15% Similarity=0.123 Sum_probs=191.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPR 298 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~ 298 (452)
++.+|+++++++|.+++++...+...+|..+++++|+ .++++++++.++..+...+..|++.+..|.++|++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 4679999999999999999999999999999999984 45679999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHH
Q 012956 299 TAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAY 378 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 378 (452)
++++..+.++.+++.++++.+++++++++++.++++.|+|+.+.+.+++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHh----hCCChhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012956 379 VNIGCYYLFGIPLGLILGYL----VGLEVKGIWCGMLCGTILQTCVIFGIIYKTN 429 (452)
Q Consensus 379 ~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 429 (452)
.++++. ++++++.+++.+. |++|+.|+++++.+++.+..++..++.++++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999987 7899988887642 5689999999999999999988777766543
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=2.9e-17 Score=156.94 Aligned_cols=194 Identities=20% Similarity=0.238 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 012956 231 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 310 (452)
Q Consensus 231 p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (452)
|.+++++...+....++.+++++|+ .++++++.+.++..+...+..+++++..|.+++++|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 7788899999999999999999984 45779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhH
Q 012956 311 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 390 (452)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 390 (452)
.+..+++.+++++++++++.++++.|++..+.+.+++++++++.++.++.....+.+++.||.+...+.++++. +.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888999999999999999999999999999999999999999999887 67788
Q ss_pred HHHHHHH-hhC-CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 391 LGLILGY-LVG-LEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 391 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
..+++.. ..+ +|+.|+++++.+++.+..++..++.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777755 445 679999999999999988887766654
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=4.7e-19 Score=150.06 Aligned_cols=162 Identities=27% Similarity=0.458 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 012956 231 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 310 (452)
Q Consensus 231 p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (452)
|..++++.+.+...+++.+.+++|++ ++++++++.++.++...+..|++++..+.++|++|++|+|++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88999999999999999999999844 4669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhH
Q 012956 311 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIP 390 (452)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 390 (452)
+..++++.++++..+++++.++|++|+|+.+.+.+++++..++.++........+++++.||++.+++.+++..|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012956 391 LGLI 394 (452)
Q Consensus 391 ~~~~ 394 (452)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.53 E-value=2.3e-11 Score=111.98 Aligned_cols=236 Identities=16% Similarity=0.201 Sum_probs=170.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH
Q 012956 41 LRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 120 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 120 (452)
.+...+....+......|++.+..+.+++...+ +++.+++.........+.+++..+...... ..+.++...
T Consensus 38 ~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~-- 109 (273)
T PF01943_consen 38 YSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLILLIAS----FFGNPSLSL-- 109 (273)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCchHHH--
Confidence 334455556666666788999988888886443 445555666555555444444433322222 333332221
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHH
Q 012956 121 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLL 200 (452)
Q Consensus 121 ~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~ 200 (452)
.+........++.........++++.++.+.....++...+...++...++.. +.+..+..++..++..+..++..+
T Consensus 110 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 186 (273)
T PF01943_consen 110 --ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLF 186 (273)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222225788888999999999999999999999999998876666654 345899999999999999888877
Q ss_pred HHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012956 201 YIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGM 280 (452)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l 280 (452)
+.+|+.. ++.+..+++..|++++.+.|..+..+...+....|..+++.+.+ ..++|.|+.+.++......+..++
T Consensus 187 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~ 261 (273)
T PF01943_consen 187 YLRRKLR----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSI 261 (273)
T ss_pred HHHHHHc----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776421 22222235779999999999999999999999999988888764 345889999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012956 281 NAAVSVRTSNEL 292 (452)
Q Consensus 281 ~~a~~~~~~~~~ 292 (452)
.++..|.+++.+
T Consensus 262 ~~~~~P~~s~l~ 273 (273)
T PF01943_consen 262 STVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHhC
Confidence 999999999863
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.51 E-value=1.1e-11 Score=124.80 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=135.2
Q ss_pred HHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC----CHHHHHHHHHHHHHHH
Q 012956 55 IQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMI 129 (452)
Q Consensus 55 ~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~yl~i~~ 129 (452)
+..+++.+..|.+++++|++|+++.++..+++.......+++.+++ ..+.+++..++.+ +++....+..++++.+
T Consensus 275 ~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~ 354 (502)
T TIGR01695 275 FGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYG 354 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999887 7888999988754 4567778889999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 012956 130 PQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 205 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~~ 205 (452)
++.++..+..+..+.+++.||++.+++..+...++|++++++++.. +|..|+++|+.+++.+..++..++.+|+
T Consensus 355 ~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 355 LGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876 7899999999999999998887777663
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.42 E-value=9.8e-11 Score=115.35 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=144.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC----CCH
Q 012956 41 LRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQ 115 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~ 115 (452)
++.+..........+..++++..-|..|+...++|.++.++.+++++.....+.++.++. ..+++|+..++. .+.
T Consensus 236 l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~ 315 (451)
T PF03023_consen 236 LNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTA 315 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCH
Confidence 334555555555566778999999999999999999999999999999999999999987 899999998763 356
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 012956 116 EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFID 195 (452)
Q Consensus 116 ~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~ 195 (452)
+..+.....+++++++.|+..+..++...+.+.+|+|.++...+++.++|++++.++... +|..|.++|+.++..+..
T Consensus 316 ~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 316 EDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999999999999999999999999999888877 899999999999999999
Q ss_pred HHHHHHHHhc
Q 012956 196 ITRLLYIFSG 205 (452)
Q Consensus 196 ~~~~~~~~~~ 205 (452)
++..+.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9988888774
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.37 E-value=1.1e-10 Score=117.11 Aligned_cols=196 Identities=13% Similarity=0.150 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCChhHHHHH
Q 012956 226 VRLSLASAVMLCVEIWYFMALILFAGY-LKNAKLSVAGLSICMNILGWSNMVSI-GMNAAVSVRTSNELGAAHPRTAKLS 303 (452)
Q Consensus 226 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~ava~~~i~~~i~~~~~~~~~-~l~~a~~~~~~~~~g~~~~~~~~~~ 303 (452)
.|-+.|..++++........+..+.++ +|++ +.|+++.+..+..+...+.. |++++....++|..|++|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~--~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAE--GVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 456789999999999998888888877 4744 46699999999888877754 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHH
Q 012956 304 LVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGC 383 (452)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 383 (452)
.+.+..+.+..+++.+++++++++++...+.+|++. ..+++++++..++..+.......+++.+|.+.....+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999998877666653 3467888899999999999999999999999999999888
Q ss_pred HHhhhhHHHHHHH-----HhhCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012956 384 YYLFGIPLGLILG-----YLVGLEVKGIWCGMLCGTILQTCVIFGIIYKT 428 (452)
Q Consensus 384 ~~~~~i~~~~~l~-----~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 428 (452)
. +.++.....+. ...+.++.|..+++.++..+..+...++++++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 44433322221 12245678888888888888888766555443
No 28
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.37 E-value=2.6e-09 Score=97.09 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHH
Q 012956 48 IRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATW 127 (452)
Q Consensus 48 ~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i 127 (452)
..........|+... +.+. .++|+++.++..+.......+.+++..++. ..+..++ .+++.. .++.+
T Consensus 30 ~~~~~~~~~~g~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~----~~~~~ 96 (251)
T PF13440_consen 30 VSILSIVASLGLRQS----LVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILA---ILIAYFF-GDPELF----WLLLL 96 (251)
T ss_pred HHHHHHHHHHHHHHH----HHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-CChhHH----HHHHH
Confidence 333333334455444 3332 345666666666666655444443333321 1121233 333332 35667
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012956 128 MIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 207 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~~~~ 207 (452)
..+..++.......++.+++.+|.+......+...+....+...+. ..+.+..+..++..++..+..++.....+++ .
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 174 (251)
T PF13440_consen 97 LALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLL-YLGLNLWSILLAFIISALLALLISFYLLRRK-L 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 7788888999999999999999999999999999998855544444 3345889999999999998887665533321 1
Q ss_pred CCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 012956 208 GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY-LKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVS 285 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~ava~~~i~~~i~~~~~-~~~~~l~~a~~ 285 (452)
+. .+ +.+..| .++.+.|..+.++........+..+++. +| ...+|.|+.+.++...+. .+..++++...
T Consensus 175 ~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~ 245 (251)
T PF13440_consen 175 RL--SF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFF 245 (251)
T ss_pred CC--Cc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 222234 7999999999999999999999999988 65 445779999999999888 89999999999
Q ss_pred HHHHHH
Q 012956 286 VRTSNE 291 (452)
Q Consensus 286 ~~~~~~ 291 (452)
|.++|.
T Consensus 246 p~lar~ 251 (251)
T PF13440_consen 246 PKLARM 251 (251)
T ss_pred HHHhCC
Confidence 999873
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.37 E-value=1.8e-09 Score=105.18 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=135.0
Q ss_pred HHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC----CCHHHHHHHHHHHHHH
Q 012956 54 YIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWM 128 (452)
Q Consensus 54 ~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~yl~i~ 128 (452)
.+..++++...|..|+...++|.++.++..+.++.++.++++|.+.+ ..+++|+.+.+. .+++......+.+..+
T Consensus 283 ifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y 362 (518)
T COG0728 283 IFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAY 362 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999987 899999998762 3456667778889999
Q ss_pred HhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 012956 129 IPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 205 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~~ 205 (452)
++++++..+..++...+++.||.|.|+++.+++.++|+.+++.+... +|..|.++++.++.++...++++.++|+
T Consensus 363 ~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 363 SLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999777766 7888899999999999998887777775
No 30
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.35 E-value=7e-11 Score=115.62 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=186.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCh
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHP 297 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~-~~~~~~~l~~a~~~~~~~~~g~~~~ 297 (452)
..+.|++.+++.|..+....+.....+++.+.+++|..+ .++.+++....+. -..+..|+..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~le--Laa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLE--LASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchH--HHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578999999999999999999999999999999999664 5588888888776 5577889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhH
Q 012956 298 RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVA 377 (452)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 377 (452)
+......+++.......+.+...+ +.+.+++...+.+|+++...+..|.++.....+.+.....+...+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888888764 5677999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 378 YVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 378 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
++..... .+++++.+++.+.+++|..|+..+..+++.........+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9998887 899999999999999999999999999999998877766544
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.32 E-value=1.5e-12 Score=110.10 Aligned_cols=131 Identities=21% Similarity=0.371 Sum_probs=118.3
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHH
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEIS 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 118 (452)
+.+........ ...+..|++.|..+.+||++|++|+|++++..+.++.+..+++++.++. ..+.+++..+++.|++..
T Consensus 30 ~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 108 (162)
T PF01554_consen 30 AYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVI 108 (162)
T ss_dssp HCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCH
T ss_pred HHHHHHHHHHH-HhhhcccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHH
Confidence 44444444444 4458889999999999999999999999999999999999999999987 888899999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHHHHH
Q 012956 119 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTILSWL 171 (452)
Q Consensus 119 ~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~ 171 (452)
+++.+|+++..++.++..+....++++||.||++.+++.++++. +++++++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 109 EIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999999999999999999 999998874
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.11 E-value=5.4e-09 Score=102.61 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=132.4
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012956 246 LILFAGYLKNAKLSVAGLSICMNILGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIV 324 (452)
Q Consensus 246 ~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~-~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (452)
..++...+|++ +.+..+....+..++..+ ..|++++....++|+ ++|+++.++....++...+..+++.++++++
T Consensus 25 ~~i~ar~Lg~~--~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 100 (416)
T PRK15099 25 VKLLAVSFGPA--GVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLL 100 (416)
T ss_pred HHHHHhhcCcH--HHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666743 456777777777766655 667888888888887 6888999999999999999999999999999
Q ss_pred hccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChh
Q 012956 325 TRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVK 404 (452)
Q Consensus 325 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 404 (452)
+.+++...+.+|++ + ..++.+..+..++..+.....+.+++.||++.++...+++. +.++.+ +++... ..|+.
T Consensus 101 ~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~-~~Gv~ 173 (416)
T PRK15099 101 AAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYR-LGGYE 173 (416)
T ss_pred HHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHH-Hhcch
Confidence 99999988877665 2 34566666666677888899999999999999999988887 566555 332222 24999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012956 405 GIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 405 g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
|+++++.+++.+..+...+.+++
T Consensus 174 Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 174 GALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766655543
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=99.08 E-value=2.8e-07 Score=92.61 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=117.2
Q ss_pred HHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Q 012956 58 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYA 136 (452)
Q Consensus 58 gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~ 136 (452)
.++....|..|+. ++|+++.++.+.+.+.....++++++++ ..+++|++.++.+++ ...+...++++++...+..
T Consensus 263 ~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~ 338 (492)
T PRK10459 263 IITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRS 338 (492)
T ss_pred HHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHH
Confidence 3556667888875 6688889999999999999999998886 788899988776543 3456788999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 137 LNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 204 (452)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~ 204 (452)
+.......+++.||.|.+...+++..++++...+++... +|+.|+++|+.+++.+...+..++..|
T Consensus 339 ~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 339 VGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888766655544 799999999999999988887776644
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.88 E-value=4.9e-07 Score=90.59 Aligned_cols=142 Identities=24% Similarity=0.291 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHH
Q 012956 44 RRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAG 122 (452)
Q Consensus 44 ~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 122 (452)
+..........+...++....|.+++...++|+++.++..++++.+..+.+.+..++ ..+++|++..+.+++... +.
T Consensus 254 ~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~ 331 (480)
T COG2244 254 AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AA 331 (480)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hh
Confidence 445566666677788999999999999999999999999999999999999999987 788889998776554321 55
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 012956 123 TFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 190 (452)
Q Consensus 123 ~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~ 190 (452)
..+++.++..++..+.......+++.|+.+..+....++.++|++++.+++.. +|..|+++++ .+
T Consensus 332 ~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 332 PILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 67899999999999999999999999999999999999999999999999887 7889999988 44
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.70 E-value=4.2e-05 Score=76.52 Aligned_cols=204 Identities=10% Similarity=0.008 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCh-
Q 012956 222 LWSFVRLSLASAVMLCVEIWYFMALILFAGY--LKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHP- 297 (452)
Q Consensus 222 ~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~ava~~~i~~~i~~~~~-~~~~~l~~a~~~~~~~~~g~~~~- 297 (452)
-++.++.......+++...+-..-+.+++.. +.+.+ .-|.|++++++-+++. .+...+-.+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 3788888999989888888888888877777 44322 2459999999988766 56777888888888888765433
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 012956 298 --------RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIG 369 (452)
Q Consensus 298 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 369 (452)
++..+.+...++....+++.+..+-...++.+.+++.++.=.-..+...++.++...++.+++.+...+.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345666777777777777777777777777788877543222223577899999999999999999999999
Q ss_pred cCccchhHHhhhHHH--HhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 370 AGWQATVAYVNIGCY--YLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 370 ~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
..+.+.....+-.-. .++.+..++++..+ ++|..|..+|..+...++.+.+..++++
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 988766544333221 14556667777655 7899999999999999999888777654
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.67 E-value=4.5e-06 Score=68.90 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=73.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 125 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 204 (452)
Q Consensus 125 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~ 204 (452)
+++.+++.++..+.......+++.||+|..+...+++.++|++++++++.. +|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999876 899999999999999999888887776
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.00029 Score=66.35 Aligned_cols=296 Identities=11% Similarity=0.023 Sum_probs=167.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH-HhC-CchhhHHHHHHHHHHHHHHHHHHHHH
Q 012956 126 TWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIF 203 (452)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~-~gv~Gaala~~i~~~~~~~~~~~~~~ 203 (452)
.+...+...-.+...+.-..|...+.+.-....-+..+++-++.+..+. +.+ .++.--|+|.....+.-.++..++..
T Consensus 127 ~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf 206 (530)
T KOG2864|consen 127 FIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYF 206 (530)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333334444445566666666677777777777444333333 322 23333344444333333332222222
Q ss_pred h-cC-CCC---------CCCCCcHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChhhHHHHHHHHHH
Q 012956 204 S-GA-CGP---------TWSGFSWK--AFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY---LKNAKLSVAGLSICM 267 (452)
Q Consensus 204 ~-~~-~~~---------~~~~~~~~--~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~ava~~~i~~ 267 (452)
+ ++ .+. ..++.... ....=++..+.......+.+...+...-+.+++.. .+.++++ .|.+++
T Consensus 207 ~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Qg--vYd~v~ 284 (530)
T KOG2864|consen 207 YIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQG--VYDLVS 284 (530)
T ss_pred HHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhh--HHHHHH
Confidence 2 22 000 00111000 00011344444444555555555555545444442 2334555 888888
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhccCChhHHHHHH---HHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHH
Q 012956 268 NILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSL---VVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLV 343 (452)
Q Consensus 268 ~i~~~~~-~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 343 (452)
+.-++.. ++...+-.......+|...+++.|+.++.. ....+....+++....+-...++..+.+..++.=.-..+
T Consensus 285 n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~ 364 (530)
T KOG2864|consen 285 NYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGG 364 (530)
T ss_pred hhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCc
Confidence 8877655 667778888888899988877777777654 444555555555555555555666777665432112234
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhh---hHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHH
Q 012956 344 IDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVN---IGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCV 420 (452)
Q Consensus 344 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 420 (452)
...++++++..++.+++.+..++..+.++.+-.-.-+ .... +..+.+.+++..+ +|..|.-.|..+...++-+.
T Consensus 365 ~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIly 441 (530)
T KOG2864|consen 365 SLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILY 441 (530)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988766543222 2222 4566778888666 78888888888887777766
Q ss_pred HHHHHh
Q 012956 421 IFGIIY 426 (452)
Q Consensus 421 ~~~~~~ 426 (452)
....++
T Consensus 442 s~~fI~ 447 (530)
T KOG2864|consen 442 SLRFIR 447 (530)
T ss_pred HHHHHH
Confidence 655444
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.03 E-value=3.9e-05 Score=63.26 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 347 TPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 347 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
+++++++.++.++.....+.+++.||+|..+..+..+. ++++++++.+ .|.+|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999887 8899998888 66699999999999999999998888877
Q ss_pred h
Q 012956 427 K 427 (452)
Q Consensus 427 ~ 427 (452)
|
T Consensus 79 k 79 (146)
T PF14667_consen 79 K 79 (146)
T ss_pred H
Confidence 6
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.00 E-value=0.0023 Score=58.51 Aligned_cols=179 Identities=17% Similarity=0.291 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHH-HHHHHhhcChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 012956 234 VMLCVEIWYFMA-LILFAGYLKNAKLSVAGLSICMNILGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSS 311 (452)
Q Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~-~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 311 (452)
..+......... ..++...+|+++ .|.++....+.++...+ ..|++++..-..++...+ .++.++.........
T Consensus 10 ~~~~~~~~~~~~~~~il~r~l~~~~--~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~ 85 (273)
T PF01943_consen 10 LSNILSALIGFITIPILARYLGPEE--YGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLL 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHH--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHH
Confidence 333333333333 345555666444 56999999998888776 667988888888876433 233444444333333
Q ss_pred HHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHH
Q 012956 312 FLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPL 391 (452)
Q Consensus 312 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~ 391 (452)
++.++.......... .+. +++.. ..+........++..........+++.++.+.....++... +..+..
T Consensus 86 ~~~~~i~~~~~~~~~-----~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 155 (273)
T PF01943_consen 86 LIFSLIFLLILLIAS-----FFG-NPSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSLLL 155 (273)
T ss_pred HHHHHHHHHHHHHHH-----HcC-CchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333333332222222 333 33321 11222222222577888889999999999999888888776 344433
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 392 GLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 392 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
...+.. ...+..+...+..++..+..++...+.+|
T Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 156 ILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 22348889999999998888777766654
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.00 E-value=0.013 Score=54.22 Aligned_cols=338 Identities=10% Similarity=0.054 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHH
Q 012956 49 RRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWM 128 (452)
Q Consensus 49 ~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~ 128 (452)
..+...+..|+....++++|...=+||.+++..-..-...+....+..++.. .-..+.+.+.. |=...
T Consensus 70 ~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~ 137 (467)
T COG4267 70 FIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILA 137 (467)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHH
Confidence 3444455667888888888888777777666444444433333333333221 11122232222 21223
Q ss_pred HhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012956 129 IPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG 208 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~~~~~ 208 (452)
+......+..-+...++.+++|.+.....-.++.++...+..++-. ++.+|..++..++..+.......++.|.-..
T Consensus 138 ~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~ 214 (467)
T COG4267 138 CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 3344455555666778899999999999999999998888765543 6899999999999999888877777765222
Q ss_pred CCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH-------HHHHHHHH---
Q 012956 209 PTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNIL-------GWSNMVSI--- 278 (452)
Q Consensus 209 ~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~-------~~~~~~~~--- 278 (452)
.+...++..+ ..++..+ ..+-.....++-..++.+.-..++++. ++.--.++.+. .+...|..
T Consensus 215 ~~~i~FdFL~--~~~~y~S----LllIg~FY~lgiwid~FifW~~~~~~~-Iag~~~~S~lYDvpiF~ayl~~iPs~vvF 287 (467)
T COG4267 215 SRRIGFDFLL--YRRKYPS----LLLIGFFYNLGIWIDNFIFWKVPTGIE-IAGPFFASPLYDVPIFYAYLFIIPSMVVF 287 (467)
T ss_pred ccccceehhh--hhhcchH----HHHHHHHHHhHhhhhheeeEecCCCCE-eecceecchhhhHHHHHHHHHhcchhhee
Confidence 2222333221 1222211 122233344445555555544442222 11111111111 11111111
Q ss_pred --HHHHHHHHHHHHHh----cc-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHH
Q 012956 279 --GMNAAVSVRTSNEL----GA-------AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVID 345 (452)
Q Consensus 279 --~l~~a~~~~~~~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 345 (452)
.+-+-..+.--+.+ |. ++.++.....++.+.-.+-+-...++.++++++.+...++-++. -.+
T Consensus 288 ~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~ 363 (467)
T COG4267 288 LISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLD 363 (467)
T ss_pred eeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHH
Confidence 12222333222222 11 23344444555555555666677788889999999988865442 344
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHH-hhCCChhHHHHHHHHH
Q 012956 346 LTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGY-LVGLEVKGIWCGMLCG 413 (452)
Q Consensus 346 ~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~g~~g~~~a~~~~ 413 (452)
.+++-.++.-.+......-.+..-..+-+..+..+..-. +.+..+.++... .|++--.|...|..+.
T Consensus 364 lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 364 LFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 556666665555555555555444455554444433332 344455554432 2333334444444333
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.80 E-value=0.02 Score=51.95 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=107.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 012956 218 AFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAH 296 (452)
Q Consensus 218 ~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~ 296 (452)
.....++++++-.|..++.....+.-.+.+.-+++- .+..+..|+|+++..+.-++..+...+-+....++.+ +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 345688999999999999998888888877777653 3444557899999999999998888888877776654 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHhccc-hhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 012956 297 PRTAKLSLVVAVFSSFLIGLTLSLI-----LIVTRNQ-YPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGA 370 (452)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 370 (452)
.+ ++.... ...+.++..+.+ .--+... +-+++.-||++.+.+...+.++.+..+++++....++++.=.
T Consensus 81 rs--rr~~vl---~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RS--RRKAVL---CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hh--hHHHHH---HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 22 211111 112222222222 1111222 233445689999999999999999999999999999998855
Q ss_pred CccchhHHhhhHH
Q 012956 371 GWQATVAYVNIGC 383 (452)
Q Consensus 371 g~~~~~~~~~~~~ 383 (452)
.++......++..
T Consensus 156 r~s~iV~~aSI~~ 168 (345)
T PF07260_consen 156 RHSWIVGSASIAD 168 (345)
T ss_pred cceeEeehHHHHH
Confidence 5655555555443
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.76 E-value=0.011 Score=53.32 Aligned_cols=164 Identities=22% Similarity=0.348 Sum_probs=104.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012956 245 ALILFAGYLKNAKLSVAGLSICMNILGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILI 323 (452)
Q Consensus 245 ~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~-~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (452)
....+...++.++ .|.|+....+..+...+ ..|+.+...- ..++|.++.++..+.......+..++..++..
T Consensus 7 ~~~~lar~l~~~~--~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 7 FLILLARYLGPED--FGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHCCHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667544 55888888888777765 3445444433 23466777777777666555555544444322
Q ss_pred HhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCCh
Q 012956 324 VTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEV 403 (452)
Q Consensus 324 ~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 403 (452)
.... .+ ++++ ...++....+..++..........+++.+|.+........... ..+.....+. ..+.+.
T Consensus 80 ~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLL-YLGLNL 148 (251)
T ss_pred HHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHH-HHHhhH
Confidence 2222 33 3333 3345667777888889999999999999999998888888873 3333333332 222378
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 012956 404 KGIWCGMLCGTILQTCVIFGIIY 426 (452)
Q Consensus 404 ~g~~~a~~~~~~~~~~~~~~~~~ 426 (452)
.+..++..++..+..+......+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888988888887766555433
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.025 Score=53.75 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=114.9
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcch---HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC
Q 012956 37 LRRKLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDM---MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG 112 (452)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 112 (452)
.++.+++-++...-+. +--+--..-.+.||...++++|+ +.......+.+...+|++.+.. .....+++.+.+
T Consensus 279 vYd~v~n~GSLlaR~i---F~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lyg 355 (530)
T KOG2864|consen 279 VYDLVSNYGSLLARLI---FRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYG 355 (530)
T ss_pred HHHHHHhhhhHHHHHH---hChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHc
Confidence 4566666666544332 22344444455566655555444 4555666666666777666554 566777777776
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 012956 113 QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM---VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNA 189 (452)
Q Consensus 113 ~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i 189 (452)
++.-..+.+-..+++.+.-+|+.+++++..++..+....+ ..-...++.++..++++++++-. +|..|..+|+++
T Consensus 356 G~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANii 433 (530)
T KOG2864|consen 356 GSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANII 433 (530)
T ss_pred CccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHH
Confidence 6544444445678999999999999999999998876543 33455677788889999999988 677999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012956 190 SWWFIDITRLLYIFSG 205 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (452)
...+-.+....++++.
T Consensus 434 Nm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 434 NMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888887777764
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.34 E-value=0.008 Score=60.42 Aligned_cols=128 Identities=18% Similarity=0.090 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCh---h
Q 012956 77 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI---M 152 (452)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~---~ 152 (452)
++..+.+...+.+...+++++... -..++.++.+++++.-..+.+...++..+.-+|+.+++++..++.++.... +
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 345667777777777777777665 666777777776554444455678899999999999999999999988654 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 012956 153 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 205 (452)
Q Consensus 153 ~~~~~~~~~~~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~~~~~~~~~~ 205 (452)
......++.+++.+..+++++.. ++|..|..+|+++...+-.++...+++|.
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888888876 79999999999999999999998888763
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.03 E-value=0.25 Score=45.09 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=92.3
Q ss_pred HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-hC--CchhhHHH
Q 012956 109 SLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK-LG--LGLVGAAV 185 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~--~gv~Gaal 185 (452)
..++.++++.+.++..+.++.+--++.++....+|++.=.+++.......+...+..+++..+++.. ++ -+..--.+
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 4568899999999999999998888889999999888755555544444444333333333333321 11 11111122
Q ss_pred HHHHHHHHHH--HHHHHHHHhcCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChh---hHH
Q 012956 186 ALNASWWFID--ITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY-LKNA---KLS 259 (452)
Q Consensus 186 a~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~a 259 (452)
|...+..+-+ +++.++..-++........+..+...+++++++.+|.+.....+.+.-.+.+.+.++ +++. .++
T Consensus 196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~a 275 (345)
T PF07260_consen 196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEA 275 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhh
Confidence 3333333222 222222111121111212222333568999999999999999999998888888887 5543 234
Q ss_pred HHHHHHHHH
Q 012956 260 VAGLSICMN 268 (452)
Q Consensus 260 va~~~i~~~ 268 (452)
++...+.++
T Consensus 276 vavl~~~yp 284 (345)
T PF07260_consen 276 VAVLTATYP 284 (345)
T ss_pred hhhhccccC
Confidence 454444333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=88.01 E-value=25 Score=33.42 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=92.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHH
Q 012956 270 LGWSNMV-SIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTP 348 (452)
Q Consensus 270 ~~~~~~~-~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 348 (452)
..++.++ +.|++....-.+|..+=++|.+++.....-...+....+...+...+. ..++. +...+ .
T Consensus 69 ~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~---si~yk--~ 135 (467)
T COG4267 69 CFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQY---SIVYK--I 135 (467)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCch---hHHHH--H
Confidence 3344443 556778888888888878888888877776666666666555532211 12222 12222 2
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 349 LLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
..+...+..+...+....+.++++.|...+.-.++. ++.+.+++++.. .++.|..++..++..+.......+..+
T Consensus 136 l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 136 LACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 233344555666777788999999998777666665 677777776654 589999999999988877766655543
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=82.72 E-value=37 Score=30.78 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHH
Q 012956 275 MVSIGMNAAVSVRTSNELGAAHPRTAKLSLV 305 (452)
Q Consensus 275 ~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~ 305 (452)
.+...+........=+...++|++++++...
T Consensus 111 ~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 111 IFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 3344455566666667778899998876543
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=62.96 E-value=1.5e+02 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc
Q 012956 296 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPAL 332 (452)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 332 (452)
+.++.+++.+++.+.++........+..+..-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577999999999999999988888877777777663
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=54.58 E-value=79 Score=22.81 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHH
Q 012956 280 MNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLT 317 (452)
Q Consensus 280 l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (452)
++......+-+.+.+||++++++.-+++.+++.+-...
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 45555567777888999999999998888777544433
No 50
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=46.90 E-value=2.3e+02 Score=25.87 Aligned_cols=31 Identities=3% Similarity=-0.161 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHH
Q 012956 275 MVSIGMNAAVSVRTSNELGAAHPRTAKLSLV 305 (452)
Q Consensus 275 ~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~ 305 (452)
.+...+........-+...++|+++.++...
T Consensus 112 ~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 112 LFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 3344455566666667777899998876544
No 51
>PF14184 YrvL: Regulatory protein YrvL
Probab=46.82 E-value=1.5e+02 Score=23.72 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 012956 84 QRSWIILITTALMLMFMYIFAQQILSLIGQTQ-EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 162 (452)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (452)
...+...+...++.+...+....+.+++|.+= +.....--.+.+...+.|+..+..++...+.-.+-.+... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 34444445555555555666677778877542 2222222223444667777777777766665553344333 35667
Q ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 012956 163 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDI 196 (452)
Q Consensus 163 ~~~i~l~~~li~~~~~gv~Gaala~~i~~~~~~~ 196 (452)
.+....++..++..|.=+.+.-+.+..--+++.+
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~ 116 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLSEIIFALL 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHH
Confidence 7788888888876654444544444433333333
No 52
>COG5393 Predicted membrane protein [Function unknown]
Probab=43.54 E-value=1.5e+02 Score=22.88 Aligned_cols=49 Identities=4% Similarity=-0.126 Sum_probs=27.9
Q ss_pred hhCCChhHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhcC
Q 012956 398 LVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGG 446 (452)
Q Consensus 398 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (452)
.|.+-.......+++-+.+..+.+.|.+++..........++..+++++
T Consensus 77 ~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~~s~l~~aT~~ELanDRe 125 (131)
T COG5393 77 DPTYRLNAMIATTAVLLVLALIGCIWTLRKSRKSTLLRATRHELANDRE 125 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhhHH
Confidence 4545555666667777777777777777664444444444444444333
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.34 E-value=65 Score=21.97 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhhcC
Q 012956 431 NKEAAVAGDRIRKWGG 446 (452)
Q Consensus 431 ~~~~~~~~~~~~~~~~ 446 (452)
+++.++.+++.++-++
T Consensus 47 r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=37.71 E-value=59 Score=23.38 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhcCCCCCC
Q 012956 434 AAVAGDRIRKWGGHTENE 451 (452)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~ 451 (452)
+++.+++.++.+.+++.+
T Consensus 43 i~RIreraEDSGnES~Gd 60 (81)
T PF00558_consen 43 IERIRERAEDSGNESDGD 60 (81)
T ss_dssp HHHHHCTTTCCHCTTTTC
T ss_pred HHHHHcccccCCCCCCCc
Confidence 344555555444444443
No 55
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=35.81 E-value=2.2e+02 Score=22.55 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=9.2
Q ss_pred HHHhhcChHHHHHHHHHH
Q 012956 423 GIIYKTNWNKEAAVAGDR 440 (452)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~ 440 (452)
+......++++.++.+++
T Consensus 118 w~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 118 WLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444566666655543
No 56
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.56 E-value=1.5e+02 Score=25.94 Aligned_cols=39 Identities=0% Similarity=0.087 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCC
Q 012956 76 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQT 114 (452)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (452)
++...+.+..++...+++-.++++++.+..|+..+++.|
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 344444555555444444444444566666777666543
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.26 E-value=95 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012956 405 GIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 405 g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
|+.++.+++-+...++..|+++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444
No 58
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=27.24 E-value=3e+02 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh
Q 012956 179 GLVGAAVALNASWWFIDITRLLYIFS 204 (452)
Q Consensus 179 gv~Gaala~~i~~~~~~~~~~~~~~~ 204 (452)
++.|...++.+++++..++...|.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 44566677888888877777666655
No 59
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.21 E-value=2e+02 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHhhhHHHHhhhhHHHHHHHHh-------hCCChhHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 012956 377 AYVNIGCYYLFGIPLGLILGYL-------VGLEVKGIWCGMLCGTILQTCVIFGIIYKTNW 430 (452)
Q Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 430 (452)
-..++++ ++.+|..++-+.+ |.......++.......+.++..+++++|++|
T Consensus 259 k~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 259 KILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444 3556666665442 11111122333333333444555677888887
No 60
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.72 E-value=1.6e+02 Score=27.61 Aligned_cols=50 Identities=8% Similarity=0.158 Sum_probs=23.9
Q ss_pred HhhhHHHHhhhhHHHHHHHHhhCCCh--------hHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 012956 378 YVNIGCYYLFGIPLGLILGYLVGLEV--------KGIWCGMLCGTILQTCVIFGIIYKTNW 430 (452)
Q Consensus 378 ~~~~~~~~~~~i~~~~~l~~~~~~g~--------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 430 (452)
..++++ .+.+|+.++.+.+ +++. ...++...+..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444 3455777765543 1111 122333333333444455667777777
No 61
>PRK01637 hypothetical protein; Reviewed
Probab=26.71 E-value=5e+02 Score=23.82 Aligned_cols=13 Identities=0% Similarity=-0.041 Sum_probs=5.8
Q ss_pred HHHHHHHHhccCC
Q 012956 284 VSVRTSNELGAAH 296 (452)
Q Consensus 284 ~~~~~~~~~g~~~ 296 (452)
..--..+.++.++
T Consensus 112 l~~a~N~i~~~~~ 124 (286)
T PRK01637 112 IDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHhCCCC
Confidence 3334444555443
No 62
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.83 E-value=1.8e+02 Score=18.24 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhcChHHHHHH
Q 012956 406 IWCGMLCGTILQTCVIFGI-IYKTNWNKEAAV 436 (452)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 436 (452)
+|.++.++.++.......- ..+++.++++++
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~ 38 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLRRRRRLRKELKR 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544444333322 223444444443
No 63
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=25.65 E-value=1.9e+02 Score=24.16 Aligned_cols=41 Identities=2% Similarity=-0.092 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 387 FGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 387 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
+...-.|++..+.++.+..-++-+.+...++..+..+-++.
T Consensus 28 vS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYkN 68 (170)
T PF07074_consen 28 VSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYKN 68 (170)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444467767777888777777777777766665555543
No 64
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=24.52 E-value=6e+02 Score=23.96 Aligned_cols=34 Identities=15% Similarity=-0.074 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 012956 222 LWSFVRLSLASAVMLCVEIWYFMALILFAGYLKN 255 (452)
Q Consensus 222 ~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 255 (452)
++......+..................+...++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 44 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL 44 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444544444444444444444555553
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.49 E-value=1.2e+02 Score=23.92 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 012956 182 GAAVALNASWWFIDITRLLYIFS 204 (452)
Q Consensus 182 Gaala~~i~~~~~~~~~~~~~~~ 204 (452)
|..+|.+.+-+...++..+.++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333344444
No 66
>PRK03612 spermidine synthase; Provisional
Probab=24.32 E-value=7.6e+02 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=18.7
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhC
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYG 72 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g 72 (452)
.+|+.......+...+..|++.| ..++...+
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalG--s~l~~~~~ 74 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVG--ALLSKYLL 74 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH--HHHHHhhh
Confidence 44555555566666677777777 45555443
No 67
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=24.22 E-value=4.1e+02 Score=21.97 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=15.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 012956 219 FHSLWSFVRLSLASAVMLCVEIWY 242 (452)
Q Consensus 219 ~~~~k~ll~~~~p~~~~~~~~~~~ 242 (452)
+++++++++.|+-..+-.+...+.
T Consensus 40 ~~~~~~l~~~G~~~~ii~ivy~i~ 63 (169)
T PF13197_consen 40 FNDWGELFVDGLKAFIISIVYSIP 63 (169)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888887776665544443
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.03 E-value=6.3e+02 Score=23.67 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred HhhhHHHHhhhhHHHHHHHHh-------hCCCh-hHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 012956 378 YVNIGCYYLFGIPLGLILGYL-------VGLEV-KGIWCGMLCGTILQTCVIFGIIYKTNW 430 (452)
Q Consensus 378 ~~~~~~~~~~~i~~~~~l~~~-------~~~g~-~g~~~a~~~~~~~~~~~~~~~~~~~~~ 430 (452)
..++++ .+.+|..++.+.+ |..+. .|.|++..+.- +.+++.+++++|++|
T Consensus 264 ~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~-~~~~~~~~~frrk~W 321 (322)
T COG0598 264 ILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILML-LLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 344444 3556666665543 11111 24455544443 444455677778877
No 69
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.94 E-value=2.3e+02 Score=19.32 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 012956 406 IWCGMLCGTILQT 418 (452)
Q Consensus 406 ~~~a~~~~~~~~~ 418 (452)
+|.+..++.....
T Consensus 19 VWlA~~~tll~l~ 31 (67)
T COG3114 19 VWLAVGMTLLPLA 31 (67)
T ss_pred HHHHHHHHHHHHH
Confidence 5666655554433
No 70
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.80 E-value=5e+02 Score=22.41 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHH
Q 012956 286 VRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVI 344 (452)
Q Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 344 (452)
|..-......+.++-++..++....+ ....+++.++.+.+.++|+=+-+..+.+.
T Consensus 22 piflslt~~~~~~~r~~ia~~a~~~a----~~ill~f~~~G~~iL~~fGIsl~afrIAG 76 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIRELLIA----LLVMLVFLFAGEKILAFLNLRTETVSISG 76 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444455556666667766555444 44445667789999999986655555443
No 71
>COG4194 Predicted membrane protein [General function prediction only]
Probab=22.42 E-value=6.6e+02 Score=23.65 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.8
Q ss_pred CCCcccccccccccC
Q 012956 2 VPSRSRHLYDHMSIP 16 (452)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (452)
-||.|+.+.+|+.+.
T Consensus 144 Yp~~P~~~PtH~~~s 158 (350)
T COG4194 144 YPSAPNKMPTHVNIS 158 (350)
T ss_pred cCCCccccceeECCC
Confidence 589999999998776
No 72
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.16 E-value=1.1e+02 Score=25.81 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 012956 402 EVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIR 442 (452)
Q Consensus 402 g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
|+.+..++.++..++.+++.++.+++.-|++..+-..+|.+
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~ 52 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREK 52 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555566666667777776766666666665544443333
No 73
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.99 E-value=7.4e+02 Score=23.68 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 012956 310 SSFLIGLTLSLIL 322 (452)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (452)
+.+-+.+|+.++-
T Consensus 36 lv~~~~lP~liF~ 48 (385)
T PF03547_consen 36 LVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445544433
No 74
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.98 E-value=1.6e+02 Score=23.79 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 012956 409 GMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIR 442 (452)
Q Consensus 409 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
.+++..++.+++.++.+.+.-|++..+-..+|.+
T Consensus 8 ~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~ 41 (141)
T PRK08476 8 YLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777766666665554444444
No 75
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=20.39 E-value=6.9e+02 Score=23.13 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhccC
Q 012956 280 MNAAVSVRTSNELGAA 295 (452)
Q Consensus 280 l~~a~~~~~~~~~g~~ 295 (452)
++.-.....++.+|++
T Consensus 45 ~~~~~~g~l~dr~g~r 60 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPR 60 (379)
T ss_pred hhhhhhhHHHHhhCCe
Confidence 3333444555555543
No 76
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=20.16 E-value=6.6e+02 Score=22.84 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhccc
Q 012956 273 SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF-LIGLTLSLILIVTRNQYPALF 333 (452)
Q Consensus 273 ~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 333 (452)
+.++...+...+....=++-.++|.+.+.+....+..... ....+..+..++-.+.+-.++
T Consensus 109 l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 109 LTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344555666666666677788999999888777764433 334444444444344444443
Done!