Query 012956
Match_columns 452
No_of_seqs 249 out of 1864
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 19:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.9E-42 6.4E-47 343.0 31.1 386 40-428 49-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.6E-18 1.2E-22 168.5 18.8 208 217-428 6-217 (460)
3 4ev6_A Magnesium transport pro 37.6 2.2E+02 0.0074 25.6 10.2 50 378-430 281-338 (339)
4 1pw4_A Glycerol-3-phosphate tr 31.5 3E+02 0.01 25.1 10.9 15 279-293 76-90 (451)
5 4aps_A DI-OR tripeptide H+ sym 30.6 3.3E+02 0.011 25.3 26.8 20 399-418 446-465 (491)
6 2k1k_A Ephrin type-A receptor 29.8 66 0.0023 18.5 3.3 17 180-196 13-29 (38)
7 2knc_B Integrin beta-3; transm 27.5 1.4E+02 0.0049 20.4 5.3 16 403-418 10-25 (79)
8 2jwa_A Receptor tyrosine-prote 24.8 1.2E+02 0.004 18.1 4.1 8 198-205 31-38 (44)
9 2ks1_B Epidermal growth factor 24.8 1.2E+02 0.004 18.1 4.6 8 198-205 31-38 (44)
10 1pw4_A Glycerol-3-phosphate tr 24.5 4E+02 0.014 24.2 33.8 21 400-420 409-429 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.9e-42 Score=342.99 Aligned_cols=386 Identities=21% Similarity=0.337 Sum_probs=347.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Q 012956 40 KLRHRRVLIRRHAYYIQLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISN 119 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 119 (452)
+++.+..+ ......+..|++.+..+.++|++|++|+++.++.+++++.+..+++++++++..+.+|++.+++.+++..+
T Consensus 49 ~~~~~~~i-~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 127 (460)
T 3mkt_A 49 AVSIAASI-WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Confidence 34444444 34445667899999999999999999999999999999999999999987777888999888888999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-h---CCchhhHHHHHHHHHHHHH
Q 012956 120 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFID 195 (452)
Q Consensus 120 ~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~---~~gv~Gaala~~i~~~~~~ 195 (452)
.+..|+++.+++.++..+....++.+|+.||++.++..++++.++|++++++++.. + ++|+.|+++|+.+++.+..
T Consensus 128 ~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~ 207 (460)
T 3mkt_A 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIML 207 (460)
T ss_dssp HHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975 4 6999999999999999999
Q ss_pred HHHHHHHHhcCCCCC---CCCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHH
Q 012956 196 ITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGW 272 (452)
Q Consensus 196 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~ 272 (452)
++..+++++++...+ ++++...+++..|+++++|+|..++++...+....++.+++.+| +.++++|+++.++.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~ 285 (460)
T 3mkt_A 208 LLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSL 285 (460)
T ss_dssp HHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHH
Confidence 988888777632211 12222345678999999999999999999999999999999997 4457799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHH
Q 012956 273 SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLAL 352 (452)
Q Consensus 273 ~~~~~~~l~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~ 352 (452)
..++..+++++..|.+++++|++|.+++++..+++.+.++.++++.++++.++++++.++|.+|+++.+.+.++++++++
T Consensus 286 ~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~ 365 (460)
T 3mkt_A 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhhcCccchhHHhhhHHHHhhhhHHHHHHHHh----hC-CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 012956 353 CIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL----VG-LEVKGIWCGMLCGTILQTCVIFGIIYK 427 (452)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 427 (452)
+.++.+++....+.+++.||+|.+++.++++.|++++|+.+++... ++ +|+.|+|+++.+++.+..++..++++|
T Consensus 366 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999989999999999766 56 999999999999999998887666554
Q ss_pred c
Q 012956 428 T 428 (452)
Q Consensus 428 ~ 428 (452)
+
T Consensus 446 ~ 446 (460)
T 3mkt_A 446 L 446 (460)
T ss_dssp S
T ss_pred H
Confidence 3
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.78 E-value=3.6e-18 Score=168.49 Aligned_cols=208 Identities=12% Similarity=0.116 Sum_probs=188.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 012956 217 KAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAH 296 (452)
Q Consensus 217 ~~~~~~k~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ava~~~i~~~i~~~~~~~~~~l~~a~~~~~~~~~g~~~ 296 (452)
..++..|++++.++|..++++...+...+|+.+++++|+ +++++++.+.++..+...+..+++.+..|.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~--~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSA--IDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--TTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346789999999999999999999999999999999874 446799999999888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcCccchh
Q 012956 297 PRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATV 376 (452)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 376 (452)
.++.++..+.+..+.+..+++..++ ..+.+++..++..|++..+.+..++++++++.++..+.....+.+++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998765 778899999998899999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHhhhhHHHHHHHHh----hCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 012956 377 AYVNIGCYYLFGIPLGLILGYL----VGLEVKGIWCGMLCGTILQTCVIFGIIYKT 428 (452)
Q Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 428 (452)
++.++++. ++++++.+++... |++|+.|+++++.+++.+..++..++++++
T Consensus 163 ~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988 7888888887653 479999999999999999998877776653
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=37.63 E-value=2.2e+02 Score=25.62 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=26.3
Q ss_pred HhhhHHHHhhhhHHHHHHHHh-------hCCC-hhHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 012956 378 YVNIGCYYLFGIPLGLILGYL-------VGLE-VKGIWCGMLCGTILQTCVIFGIIYKTNW 430 (452)
Q Consensus 378 ~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 430 (452)
..++++ ++.+|..++.+.+ |..+ -.|-|++..+ .++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 444444 3556777766543 1111 2344444443 34445555677888888
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.49 E-value=3e+02 Score=25.08 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhc
Q 012956 279 GMNAAVSVRTSNELG 293 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g 293 (452)
.++.-....+++.+|
T Consensus 76 ~~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 76 GFSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHhHHHHHHhcC
Confidence 344444445555554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=30.63 E-value=3.3e+02 Score=25.30 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=8.6
Q ss_pred hCCChhHHHHHHHHHHHHHH
Q 012956 399 VGLEVKGIWCGMLCGTILQT 418 (452)
Q Consensus 399 ~~~g~~g~~~a~~~~~~~~~ 418 (452)
.+.+....+........+..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 446 NAKSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp GGSSTTHHHHHTHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHH
Confidence 34454444444444333333
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.81 E-value=66 Score=18.49 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 012956 180 LVGAAVALNASWWFIDI 196 (452)
Q Consensus 180 v~Gaala~~i~~~~~~~ 196 (452)
+.|+.++.+++-.+...
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34555555544444333
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.48 E-value=1.4e+02 Score=20.36 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 012956 403 VKGIWCGMLCGTILQT 418 (452)
Q Consensus 403 ~~g~~~a~~~~~~~~~ 418 (452)
+.++..+.+.+-++..
T Consensus 10 ~~~Iv~gvi~gilliG 25 (79)
T 2knc_B 10 ILVVLLSVMGAILLIG 25 (79)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 3344444444433333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.81 E-value=1.2e+02 Score=18.14 Aligned_cols=8 Identities=13% Similarity=-0.218 Sum_probs=4.0
Q ss_pred HHHHHHhc
Q 012956 198 RLLYIFSG 205 (452)
Q Consensus 198 ~~~~~~~~ 205 (452)
...+++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34555554
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.78 E-value=1.2e+02 Score=18.13 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.4
Q ss_pred HHHHHHhc
Q 012956 198 RLLYIFSG 205 (452)
Q Consensus 198 ~~~~~~~~ 205 (452)
.+++++|+
T Consensus 31 ~~~~~RRr 38 (44)
T 2ks1_B 31 IGLFMRRR 38 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33444443
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=24.47 E-value=4e+02 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=11.1
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 012956 400 GLEVKGIWCGMLCGTILQTCV 420 (452)
Q Consensus 400 ~~g~~g~~~a~~~~~~~~~~~ 420 (452)
..|....++...+...+..++
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 356666665555554444444
Done!